BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028816
(203 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O67722|RL13_AQUAE 50S ribosomal protein L13 OS=Aquifex aeolicus (strain VF5) GN=rplM
PE=3 SV=1
Length = 144
Score = 133 bits (334), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 87/126 (69%)
Query: 29 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 88
+W V DA G+ LGRLAS++A +++GK KP Y P+ D GD IV+NA+ I VTG+KL+ K
Sbjct: 14 KWWVVDATGKTLGRLASEIAKILRGKHKPYYQPDVDCGDFVIVINAEKIRVTGKKLEQKK 73
Query: 89 YYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFG 148
YYWH+ Y G LKERTLK +E P E IR AV RMLP+N+L +KL+++ G EHP
Sbjct: 74 YYWHSRYPGGLKERTLKWMLENKPEEVIRLAVKRMLPKNRLGHRMLKKLKVYRGPEHPHQ 133
Query: 149 DRPLEP 154
+ +P
Sbjct: 134 AQKPQP 139
>sp|B2GJ23|RL13_KOCRD 50S ribosomal protein L13 OS=Kocuria rhizophila (strain ATCC 9341 /
DSM 348 / NBRC 103217 / DC2201) GN=rplM PE=3 SV=1
Length = 147
Score = 131 bits (329), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 87/127 (68%)
Query: 29 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 88
+W V DA VLGRLASQ AT+++GK KPT+AP+ D GD I++NA+ + +TG KL+ K
Sbjct: 14 QWHVIDATDVVLGRLASQTATLLRGKHKPTFAPHVDTGDFVIIINAEKVALTGSKLQKKR 73
Query: 89 YYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFG 148
Y H+GY G LK + E +E++PT A+ KA+ MLP+NKL + KL+++ G+EHP
Sbjct: 74 AYRHSGYPGGLKSTSYAELLEKNPTRAVEKAIKGMLPKNKLAAQQLSKLKVYAGAEHPHQ 133
Query: 149 DRPLEPY 155
+ +PY
Sbjct: 134 AQQPKPY 140
>sp|B1MG81|RL13_MYCA9 50S ribosomal protein L13 OS=Mycobacterium abscessus (strain ATCC
19977 / DSM 44196) GN=rplM PE=3 SV=1
Length = 147
Score = 129 bits (325), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 86/126 (68%)
Query: 30 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVY 89
W V DA VLGRLA Q A +++GK KPT+AP+ D GD I++NA+ I ++G KL NK
Sbjct: 15 WYVIDATDVVLGRLAVQAANLLRGKHKPTFAPHVDGGDFVIIINAEKIALSGNKLTNKFA 74
Query: 90 YWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFGD 149
Y H+G+ G L +R++ EQ+E+ PT + KA++ MLP+NKL +RKL+++ G+EHP
Sbjct: 75 YRHSGFPGGLSKRSIGEQLEKFPTRTVEKAIVGMLPKNKLGRQIERKLKVYAGAEHPHAA 134
Query: 150 RPLEPY 155
+ P+
Sbjct: 135 QQPIPF 140
>sp|C1A3Z5|RL13_GEMAT 50S ribosomal protein L13 OS=Gemmatimonas aurantiaca (strain T-27 /
DSM 14586 / JCM 11422 / NBRC 100505) GN=rplM PE=3 SV=1
Length = 149
Score = 129 bits (325), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/119 (51%), Positives = 77/119 (64%), Gaps = 1/119 (0%)
Query: 29 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 88
RW V DA+G VLGRLAS+VA +++GK KP Y P+ D GD IV+NA + VTGRK + K
Sbjct: 14 RWYVVDAEGMVLGRLASEVAKIIRGKHKPMYTPHMDTGDFVIVINASKVQVTGRKAEQKT 73
Query: 89 YYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKL-RDDRDRKLRIFPGSEHP 146
Y+ HTGY+GH K + + P I KAV MLP+ L R RKLR+F G+EHP
Sbjct: 74 YFSHTGYMGHEKHTPFASVLAKHPERVIEKAVYGMLPKTALGRQVLRRKLRVFAGAEHP 132
>sp|P66065|RL13_MYCTU 50S ribosomal protein L13 OS=Mycobacterium tuberculosis GN=rplM
PE=3 SV=1
Length = 147
Score = 127 bits (320), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 82/126 (65%)
Query: 30 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVY 89
W V DA VLGRLA A +++GK KPT+APN D GD IV+NA + ++G KL++K+
Sbjct: 15 WYVIDATDVVLGRLAVAAANLLRGKHKPTFAPNVDGGDFVIVINADKVAISGDKLQHKMV 74
Query: 90 YWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFGD 149
Y H+GY G L +RT+ E M+R P + KA+L MLP+N+L RKLR++ G EHP
Sbjct: 75 YRHSGYPGGLHKRTIGELMQRHPDRVVEKAILGMLPKNRLSRQIQRKLRVYAGPEHPHSA 134
Query: 150 RPLEPY 155
+ PY
Sbjct: 135 QQPVPY 140
>sp|A5U8B9|RL13_MYCTA 50S ribosomal protein L13 OS=Mycobacterium tuberculosis (strain
ATCC 25177 / H37Ra) GN=rplM PE=3 SV=1
Length = 147
Score = 127 bits (320), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 82/126 (65%)
Query: 30 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVY 89
W V DA VLGRLA A +++GK KPT+APN D GD IV+NA + ++G KL++K+
Sbjct: 15 WYVIDATDVVLGRLAVAAANLLRGKHKPTFAPNVDGGDFVIVINADKVAISGDKLQHKMV 74
Query: 90 YWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFGD 149
Y H+GY G L +RT+ E M+R P + KA+L MLP+N+L RKLR++ G EHP
Sbjct: 75 YRHSGYPGGLHKRTIGELMQRHPDRVVEKAILGMLPKNRLSRQIQRKLRVYAGPEHPHSA 134
Query: 150 RPLEPY 155
+ PY
Sbjct: 135 QQPVPY 140
>sp|C1AHQ2|RL13_MYCBT 50S ribosomal protein L13 OS=Mycobacterium bovis (strain BCG /
Tokyo 172 / ATCC 35737 / TMC 1019) GN=rplM PE=3 SV=1
Length = 147
Score = 127 bits (320), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 82/126 (65%)
Query: 30 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVY 89
W V DA VLGRLA A +++GK KPT+APN D GD IV+NA + ++G KL++K+
Sbjct: 15 WYVIDATDVVLGRLAVAAANLLRGKHKPTFAPNVDGGDFVIVINADKVAISGDKLQHKMV 74
Query: 90 YWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFGD 149
Y H+GY G L +RT+ E M+R P + KA+L MLP+N+L RKLR++ G EHP
Sbjct: 75 YRHSGYPGGLHKRTIGELMQRHPDRVVEKAILGMLPKNRLSRQIQRKLRVYAGPEHPHSA 134
Query: 150 RPLEPY 155
+ PY
Sbjct: 135 QQPVPY 140
>sp|A1KPD0|RL13_MYCBP 50S ribosomal protein L13 OS=Mycobacterium bovis (strain BCG /
Pasteur 1173P2) GN=rplM PE=3 SV=1
Length = 147
Score = 127 bits (320), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 82/126 (65%)
Query: 30 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVY 89
W V DA VLGRLA A +++GK KPT+APN D GD IV+NA + ++G KL++K+
Sbjct: 15 WYVIDATDVVLGRLAVAAANLLRGKHKPTFAPNVDGGDFVIVINADKVAISGDKLQHKMV 74
Query: 90 YWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFGD 149
Y H+GY G L +RT+ E M+R P + KA+L MLP+N+L RKLR++ G EHP
Sbjct: 75 YRHSGYPGGLHKRTIGELMQRHPDRVVEKAILGMLPKNRLSRQIQRKLRVYAGPEHPHSA 134
Query: 150 RPLEPY 155
+ PY
Sbjct: 135 QQPVPY 140
>sp|P66066|RL13_MYCBO 50S ribosomal protein L13 OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=rplM PE=3 SV=1
Length = 147
Score = 127 bits (320), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 82/126 (65%)
Query: 30 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVY 89
W V DA VLGRLA A +++GK KPT+APN D GD IV+NA + ++G KL++K+
Sbjct: 15 WYVIDATDVVLGRLAVAAANLLRGKHKPTFAPNVDGGDFVIVINADKVAISGDKLQHKMV 74
Query: 90 YWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFGD 149
Y H+GY G L +RT+ E M+R P + KA+L MLP+N+L RKLR++ G EHP
Sbjct: 75 YRHSGYPGGLHKRTIGELMQRHPDRVVEKAILGMLPKNRLSRQIQRKLRVYAGPEHPHSA 134
Query: 150 RPLEPY 155
+ PY
Sbjct: 135 QQPVPY 140
>sp|B8G6P5|RL13_CHLAD 50S ribosomal protein L13 OS=Chloroflexus aggregans (strain MD-66 /
DSM 9485) GN=rplM PE=3 SV=1
Length = 143
Score = 127 bits (319), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 85/127 (66%)
Query: 30 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVY 89
W V DA G+VLGRLA+Q++T+++GK KPT+ P+ D GD IV+NA+ I +TGRK + K+Y
Sbjct: 15 WYVIDASGKVLGRLATQISTLLRGKHKPTFTPSIDGGDFVIVVNAEKIVLTGRKPEQKIY 74
Query: 90 YWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFGD 149
Y H+GY G LKE K + + P +R AV RMLP+N++ KLRI+ G HP
Sbjct: 75 YRHSGYPGGLKEIPYKMMLAKHPERILRLAVKRMLPKNRMGRRLLSKLRIYAGPNHPHAA 134
Query: 150 RPLEPYV 156
+ +PY+
Sbjct: 135 QQPKPYI 141
>sp|Q6ANL8|RL13_DESPS 50S ribosomal protein L13 OS=Desulfotalea psychrophila (strain
LSv54 / DSM 12343) GN=rplM PE=3 SV=1
Length = 142
Score = 127 bits (318), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 63/134 (47%), Positives = 92/134 (68%), Gaps = 3/134 (2%)
Query: 13 MKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVL 72
MK LA + I E W V DA+ +VLGRLAS++A+ ++GK KPT++ D+GD +V
Sbjct: 1 MKTYLAPVNEIEKE---WYVVDAENKVLGRLASEIASRLRGKHKPTFSSFIDNGDFIVVT 57
Query: 73 NAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDD 132
NA+ I +TG+K +K YY HTGYIG +KE + KE +E+ PT+ I KAV MLP+NK+
Sbjct: 58 NAEKIALTGKKWDDKTYYRHTGYIGGIKETSAKELLEKHPTDLITKAVRGMLPKNKMGRA 117
Query: 133 RDRKLRIFPGSEHP 146
+ +KL+++ G+ HP
Sbjct: 118 QLKKLKVYVGAAHP 131
>sp|Q11J65|RL13_MESSB 50S ribosomal protein L13 OS=Mesorhizobium sp. (strain BNC1)
GN=rplM PE=3 SV=1
Length = 153
Score = 125 bits (315), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 83/119 (69%), Gaps = 1/119 (0%)
Query: 29 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 88
+W + DA+G V+GRLA+ VA ++GK KPT+ P+ DDGD I++NA + TG+K ++K
Sbjct: 14 KWVLIDAEGLVVGRLATIVANRLRGKHKPTFTPHVDDGDNVIIINADKVVFTGKKYQDKT 73
Query: 89 YYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHP 146
YYWHTGY G +KERT ++ +E R P + KAV RM+PR L + + LR++ GSEHP
Sbjct: 74 YYWHTGYAGGIKERTARQILEGRFPERVVEKAVERMIPRGPLGRRQMKNLRVYAGSEHP 132
>sp|A1UT83|RL13_BARBK 50S ribosomal protein L13 OS=Bartonella bacilliformis (strain ATCC
35685 / KC583) GN=rplM PE=3 SV=1
Length = 154
Score = 125 bits (315), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/119 (51%), Positives = 83/119 (69%), Gaps = 1/119 (0%)
Query: 29 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 88
+W + DA+ VLGRLA+ VA ++GK KPT+ P+ DDGD IV+NA + +TG+K +K
Sbjct: 14 KWILIDAENLVLGRLATLVANRLRGKHKPTFTPHVDDGDNVIVINADKVVLTGKKYTDKK 73
Query: 89 YYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHP 146
YYWHTGYIG +KERT ++ +E R P I KAV RM+PR L + R LR++ GS+HP
Sbjct: 74 YYWHTGYIGGIKERTARQILEGRFPERIIEKAVERMIPRGPLGRRQMRNLRVYAGSQHP 132
>sp|A1ATL1|RL13_PELPD 50S ribosomal protein L13 OS=Pelobacter propionicus (strain DSM
2379) GN=rplM PE=3 SV=1
Length = 142
Score = 125 bits (314), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 82/117 (70%)
Query: 30 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVY 89
W + DA+ VLGRLASQ+A +++GK+K Y P+ D GD IV+NA+ I +TGRKL +K Y
Sbjct: 15 WYLVDAQEMVLGRLASQIANILRGKNKAIYTPSVDTGDFVIVVNAEKIALTGRKLADKSY 74
Query: 90 YWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHP 146
Y H+G+ G LKE + + +E+ P E I++AV MLP+NKL +KL+I+ GS HP
Sbjct: 75 YSHSGFPGGLKEISAGKLLEKKPEELIKRAVKGMLPKNKLSRHMLKKLKIYAGSSHP 131
>sp|B3EA22|RL13_GEOLS 50S ribosomal protein L13 OS=Geobacter lovleyi (strain ATCC
BAA-1151 / DSM 17278 / SZ) GN=rplM PE=3 SV=1
Length = 142
Score = 125 bits (314), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 79/118 (66%)
Query: 29 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 88
+W V DA+ VLGRLA+QVA V++GK KP Y P+ D GD +++NA+ I +TG K+ +KV
Sbjct: 14 QWFVVDAENVVLGRLATQVANVLRGKHKPMYTPSVDTGDFVVIVNAEKIALTGNKMADKV 73
Query: 89 YYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHP 146
YY H+G+ G +K T + + P E IRKAV MLP+NKL +KL+++ G HP
Sbjct: 74 YYSHSGFPGGIKSSTAAAMLSKKPEELIRKAVKGMLPKNKLARHMLKKLKVYSGGAHP 131
>sp|P38014|RL13_MYCLE 50S ribosomal protein L13 OS=Mycobacterium leprae (strain TN)
GN=rplM PE=3 SV=1
Length = 147
Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 85/126 (67%)
Query: 30 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVY 89
W V DA VLGRLA+ AT+++GK KPT+APN D GD IV+NA + ++G K+++K+
Sbjct: 15 WYVIDATDVVLGRLAAVAATLLRGKHKPTFAPNVDGGDFVIVINADKVAISGDKVQHKMV 74
Query: 90 YWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFGD 149
Y H+GY G L++RT+ E M++ P + KA++ MLP+NKL RKLR++ G +HP
Sbjct: 75 YRHSGYPGGLRKRTIGELMQKHPDRVVEKAIVGMLPKNKLSRQIQRKLRVYAGPDHPHSA 134
Query: 150 RPLEPY 155
+ P+
Sbjct: 135 QQPVPF 140
>sp|B8ZUB9|RL13_MYCLB 50S ribosomal protein L13 OS=Mycobacterium leprae (strain Br4923)
GN=rplM PE=3 SV=1
Length = 147
Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 85/126 (67%)
Query: 30 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVY 89
W V DA VLGRLA+ AT+++GK KPT+APN D GD IV+NA + ++G K+++K+
Sbjct: 15 WYVIDATDVVLGRLAAVAATLLRGKHKPTFAPNVDGGDFVIVINADKVAISGDKVQHKMV 74
Query: 90 YWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFGD 149
Y H+GY G L++RT+ E M++ P + KA++ MLP+NKL RKLR++ G +HP
Sbjct: 75 YRHSGYPGGLRKRTIGELMQKHPDRVVEKAIVGMLPKNKLSRQIQRKLRVYAGPDHPHSA 134
Query: 150 RPLEPY 155
+ P+
Sbjct: 135 QQPVPF 140
>sp|B9JVC5|RL13_AGRVS 50S ribosomal protein L13 OS=Agrobacterium vitis (strain S4 / ATCC
BAA-846) GN=rplM PE=3 SV=1
Length = 154
Score = 125 bits (313), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 83/119 (69%), Gaps = 1/119 (0%)
Query: 29 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 88
+W + DA+G V+GRLA+ +AT ++GK K TY P+ DDGD IV+NA+ + +TG+K +K
Sbjct: 14 KWVIIDAEGLVVGRLATVIATYLRGKHKVTYTPHVDDGDNVIVINAEKVVLTGKKYTDKT 73
Query: 89 YYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHP 146
YYWHTGY G +KERT ++ +E R P + KAV RM+PR L + + LR++ GS HP
Sbjct: 74 YYWHTGYPGGIKERTARQIIEGRFPERVLEKAVERMIPRGPLGRRQMKNLRVYAGSAHP 132
>sp|Q4A6X4|RL13_MYCS5 50S ribosomal protein L13 OS=Mycoplasma synoviae (strain 53)
GN=rplM PE=3 SV=1
Length = 144
Score = 124 bits (311), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 81/117 (69%)
Query: 29 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 88
+W V DA+ QVLGRLAS VA+V++GK KPT+ PN D GD I++NA+ + +TG+K KNKV
Sbjct: 15 KWFVVDAENQVLGRLASLVASVLRGKTKPTFTPNADMGDNVIIINAEKVKLTGKKEKNKV 74
Query: 89 YYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEH 145
YY H+GY G LK RT ++ E PT + KA+ M+P KL + + + L ++ G EH
Sbjct: 75 YYSHSGYPGGLKARTAEKLREEKPTALLEKAISGMIPHTKLGNQQRKNLYVYAGPEH 131
>sp|B1LBJ2|RL13_THESQ 50S ribosomal protein L13 OS=Thermotoga sp. (strain RQ2) GN=rplM
PE=3 SV=1
Length = 149
Score = 124 bits (311), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 82/126 (65%)
Query: 29 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 88
+W V DA G+VLGRLA+++A ++ GK KP Y P+ D GD IV+NA + +TG+KL KV
Sbjct: 21 KWYVVDASGKVLGRLATRIAKILMGKHKPNYTPHVDTGDYVIVVNADKVVLTGKKLDQKV 80
Query: 89 YYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFG 148
YYWH+GY G LK T ++ +E+ P I AV RMLP+N+ ++L+++ EHP
Sbjct: 81 YYWHSGYPGGLKSLTARQMLEKHPERLIWLAVKRMLPKNRKGRKMLKRLKVYASPEHPHQ 140
Query: 149 DRPLEP 154
+ EP
Sbjct: 141 AQKPEP 146
>sp|A5IMD1|RL13_THEP1 50S ribosomal protein L13 OS=Thermotoga petrophila (strain RKU-1 /
ATCC BAA-488 / DSM 13995) GN=rplM PE=3 SV=1
Length = 149
Score = 124 bits (311), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 82/126 (65%)
Query: 29 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 88
+W V DA G+VLGRLA+++A ++ GK KP Y P+ D GD IV+NA + +TG+KL KV
Sbjct: 21 KWYVVDASGKVLGRLATRIAKILMGKHKPNYTPHVDTGDYVIVVNADKVVLTGKKLDQKV 80
Query: 89 YYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFG 148
YYWH+GY G LK T ++ +E+ P I AV RMLP+N+ ++L+++ EHP
Sbjct: 81 YYWHSGYPGGLKSLTARQMLEKHPERLIWLAVKRMLPKNRKGRKMLKRLKVYASPEHPHQ 140
Query: 149 DRPLEP 154
+ EP
Sbjct: 141 AQKPEP 146
>sp|Q9X1G5|RL13_THEMA 50S ribosomal protein L13 OS=Thermotoga maritima (strain ATCC 43589
/ MSB8 / DSM 3109 / JCM 10099) GN=rplM PE=3 SV=1
Length = 149
Score = 124 bits (311), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 82/126 (65%)
Query: 29 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 88
+W V DA G+VLGRLA+++A ++ GK KP Y P+ D GD IV+NA + +TG+KL KV
Sbjct: 21 KWYVVDASGKVLGRLATRIAKILMGKHKPNYTPHVDTGDYVIVVNADKVVLTGKKLDQKV 80
Query: 89 YYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFG 148
YYWH+GY G LK T ++ +E+ P I AV RMLP+N+ ++L+++ EHP
Sbjct: 81 YYWHSGYPGGLKSLTARQMLEKHPERLIWLAVKRMLPKNRKGRKMLKRLKVYASPEHPHQ 140
Query: 149 DRPLEP 154
+ EP
Sbjct: 141 AQKPEP 146
>sp|B9LJG2|RL13_CHLSY 50S ribosomal protein L13 OS=Chloroflexus aurantiacus (strain ATCC
29364 / DSM 637 / Y-400-fl) GN=rplM PE=3 SV=1
Length = 144
Score = 124 bits (311), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 83/127 (65%)
Query: 30 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVY 89
W V DA G+VLGRLA+Q++T+++GK KPT+ P+ D GD IV+NA+ I +TGRK K+Y
Sbjct: 15 WYVIDASGKVLGRLATQISTLLRGKHKPTFTPSIDGGDFVIVVNAEKIVLTGRKPDQKIY 74
Query: 90 YWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFGD 149
Y HTGY G +K K + + P +R AV RMLP+N++ KLRI+ G HP
Sbjct: 75 YRHTGYPGGIKATPYKMMLAKHPDRILRLAVKRMLPKNRMGRRLLSKLRIYAGPNHPHAA 134
Query: 150 RPLEPYV 156
+ +PY+
Sbjct: 135 QQPKPYI 141
>sp|A9WH96|RL13_CHLAA 50S ribosomal protein L13 OS=Chloroflexus aurantiacus (strain ATCC
29366 / DSM 635 / J-10-fl) GN=rplM PE=3 SV=1
Length = 144
Score = 124 bits (311), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 83/127 (65%)
Query: 30 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVY 89
W V DA G+VLGRLA+Q++T+++GK KPT+ P+ D GD IV+NA+ I +TGRK K+Y
Sbjct: 15 WYVIDASGKVLGRLATQISTLLRGKHKPTFTPSIDGGDFVIVVNAEKIVLTGRKPDQKIY 74
Query: 90 YWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFGD 149
Y HTGY G +K K + + P +R AV RMLP+N++ KLRI+ G HP
Sbjct: 75 YRHTGYPGGIKATPYKMMLAKHPDRILRLAVKRMLPKNRMGRRLLSKLRIYAGPNHPHAA 134
Query: 150 RPLEPYV 156
+ +PY+
Sbjct: 135 QQPKPYI 141
>sp|B2HCZ0|RL13_MYCMM 50S ribosomal protein L13 OS=Mycobacterium marinum (strain ATCC
BAA-535 / M) GN=rplM PE=3 SV=1
Length = 147
Score = 124 bits (310), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 78/117 (66%)
Query: 30 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVY 89
W V DA VLGRLA A +++GK KPT+APN D GD IV+NA + ++ KL+NK+
Sbjct: 15 WYVIDATDVVLGRLAVAAANLLRGKHKPTFAPNVDGGDFVIVINADKVAISNEKLRNKMA 74
Query: 90 YWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHP 146
Y H+GY G L++R++ E ME+ P + KA++ MLP+NKL KLR++ G EHP
Sbjct: 75 YSHSGYPGGLRKRSIGELMEKHPDRVVEKAIVGMLPKNKLSRQIQSKLRVYAGPEHP 131
>sp|A0QSP8|RL13_MYCS2 50S ribosomal protein L13 OS=Mycobacterium smegmatis (strain ATCC
700084 / mc(2)155) GN=rplM PE=1 SV=1
Length = 147
Score = 123 bits (309), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 80/126 (63%)
Query: 30 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVY 89
W V DA VLGRLAS AT+++GK KPT+ PN D GD IV+NA I V+G KL K
Sbjct: 15 WYVIDASDVVLGRLASAAATLLRGKHKPTFTPNVDGGDFVIVINADKIAVSGDKLTKKFA 74
Query: 90 YWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFGD 149
Y H+GY G L++RT+ E +E+ PT + A++ MLP NKL +KL+++ G +HP
Sbjct: 75 YRHSGYPGGLRKRTIGELLEKHPTRVVENAIIGMLPHNKLGRQIQKKLKVYAGPDHPHAA 134
Query: 150 RPLEPY 155
+ P+
Sbjct: 135 QQPIPF 140
>sp|B9JD18|RL13_AGRRK 50S ribosomal protein L13 OS=Agrobacterium radiobacter (strain K84
/ ATCC BAA-868) GN=rplM PE=3 SV=1
Length = 154
Score = 123 bits (309), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 83/119 (69%), Gaps = 1/119 (0%)
Query: 29 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 88
+W + DA+G V+GRLAS +A ++GK K T+ P+ DDGD IV+NA I +TG+K ++KV
Sbjct: 14 KWILIDAEGLVVGRLASIIAMRLRGKHKATFTPHVDDGDNVIVINADKIVLTGKKYEDKV 73
Query: 89 YYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHP 146
YYWHTGY G +KERT ++ +E R P + KAV RM+PR L + + LR++ GS HP
Sbjct: 74 YYWHTGYAGGIKERTARQIIEGRFPERVVEKAVERMVPRGPLGRRQMKNLRVYAGSNHP 132
>sp|Q982W8|RL13_RHILO 50S ribosomal protein L13 OS=Rhizobium loti (strain MAFF303099)
GN=rplM PE=3 SV=1
Length = 154
Score = 123 bits (309), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 83/119 (69%), Gaps = 1/119 (0%)
Query: 29 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 88
+W + DA+G V+GRLA+ +A ++GK KPT+ P+ DDGD IV+NA + TG+K +KV
Sbjct: 14 KWILIDAEGLVVGRLATVIANHLRGKHKPTFTPHVDDGDNVIVINADKVVFTGKKFTDKV 73
Query: 89 YYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHP 146
YYWHTG+ G +KERT ++ +E R P + KAV RM+PR L + + LR++ G+EHP
Sbjct: 74 YYWHTGHPGGIKERTARQLLEGRFPERVVEKAVERMVPRGPLGRRQMKNLRVYAGAEHP 132
>sp|B3PVW4|RL13_RHIE6 50S ribosomal protein L13 OS=Rhizobium etli (strain CIAT 652)
GN=rplM PE=3 SV=1
Length = 154
Score = 123 bits (308), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 81/119 (68%), Gaps = 1/119 (0%)
Query: 29 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 88
+W + DA+G V+GRLAS +A ++GK K T+ P+ DDGD IV+NA + TG+K +KV
Sbjct: 14 KWVIIDAEGLVVGRLASIIAMRLRGKHKATFTPHVDDGDNVIVINADKVVFTGKKYSDKV 73
Query: 89 YYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHP 146
YYWHTGY G +KERT ++ +E R P + KAV RM+PR L + + LR++ GS HP
Sbjct: 74 YYWHTGYAGGIKERTARQIIEGRFPERVLEKAVERMVPRGPLGRRQMKNLRVYAGSNHP 132
>sp|C6E4S8|RL13_GEOSM 50S ribosomal protein L13 OS=Geobacter sp. (strain M21) GN=rplM
PE=3 SV=1
Length = 142
Score = 123 bits (308), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 82/117 (70%)
Query: 30 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVY 89
W + D +VLGR+A+++A V++GK+KPT+ P+ D GD IV+NA+ I +TGRKL +KVY
Sbjct: 15 WYLVDVDNKVLGRVATEIANVLRGKNKPTFTPSVDTGDFVIVVNAEKIALTGRKLADKVY 74
Query: 90 YWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHP 146
Y H+ Y G LKE T + +++ P E ++KAV MLP+NKL +KL+I+ G HP
Sbjct: 75 YSHSSYPGGLKEITAGKLLDKKPEELLKKAVKGMLPKNKLARHMLKKLKIYSGGAHP 131
>sp|A9IVX4|RL13_BART1 50S ribosomal protein L13 OS=Bartonella tribocorum (strain CIP
105476 / IBS 506) GN=rplM PE=3 SV=1
Length = 154
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 82/119 (68%), Gaps = 1/119 (0%)
Query: 29 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 88
+W + DA+ VLGRLA+ VA ++GK K T+ P+ DDGD IV+NA I +TG+K +K
Sbjct: 14 KWVIIDAENLVLGRLAAFVANRLRGKHKATFTPHVDDGDNVIVINADKIALTGKKYTDKK 73
Query: 89 YYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHP 146
YYWHTGYIG +KERT ++ +E R P + KAV RM+PR L + + LR++ GS+HP
Sbjct: 74 YYWHTGYIGGIKERTARQLLEGRFPERVVEKAVERMIPRGPLGRRQLKNLRVYAGSQHP 132
>sp|Q2IWN7|RL13_RHOP2 50S ribosomal protein L13 OS=Rhodopseudomonas palustris (strain
HaA2) GN=rplM PE=3 SV=1
Length = 154
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/119 (51%), Positives = 80/119 (67%), Gaps = 1/119 (0%)
Query: 29 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 88
+W V DA G V+GRLA+ VA ++GK PTY P+ D GD I++NA + +TGRK NKV
Sbjct: 14 KWVVIDATGLVVGRLATLVAMRLRGKHLPTYTPHVDCGDNIIIINAAKVVLTGRKRDNKV 73
Query: 89 YYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHP 146
YY HTG+IG +KERT K +E R P + KAV RM+PR L + LR++PG+EHP
Sbjct: 74 YYHHTGFIGGIKERTAKSILEGRFPERVVEKAVERMIPRGPLGRVQMGNLRVYPGAEHP 132
>sp|B0K5S7|RL13_THEPX 50S ribosomal protein L13 OS=Thermoanaerobacter sp. (strain X514)
GN=rplM PE=3 SV=1
Length = 143
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/117 (50%), Positives = 81/117 (69%)
Query: 29 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 88
+W V DA+G+VLGRLASQ+A ++ GK KPTY P+ D GD IVLNA+ I +TG KL++K
Sbjct: 14 KWFVIDAEGKVLGRLASQIAKILMGKHKPTYTPHVDTGDFVIVLNAEKIVLTGNKLEDKY 73
Query: 89 YYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEH 145
Y ++TGY G LKE K+ M+ P I AV MLP+N+L ++L+++ GSEH
Sbjct: 74 YKYYTGYPGGLKEVQYKKLMQTKPEFVIYHAVKGMLPKNRLGRRMIKRLKVYRGSEH 130
>sp|B0KCN4|RL13_THEP3 50S ribosomal protein L13 OS=Thermoanaerobacter pseudethanolicus
(strain ATCC 33223 / 39E) GN=rplM PE=3 SV=1
Length = 143
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/117 (50%), Positives = 81/117 (69%)
Query: 29 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 88
+W V DA+G+VLGRLASQ+A ++ GK KPTY P+ D GD IVLNA+ I +TG KL++K
Sbjct: 14 KWFVIDAEGKVLGRLASQIAKILMGKHKPTYTPHVDTGDFVIVLNAEKIVLTGNKLEDKY 73
Query: 89 YYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEH 145
Y ++TGY G LKE K+ M+ P I AV MLP+N+L ++L+++ GSEH
Sbjct: 74 YKYYTGYPGGLKEVQYKKLMQTKPEFVIYHAVKGMLPKNRLGRRMIKRLKVYRGSEH 130
>sp|Q65T20|RL13_MANSM 50S ribosomal protein L13 OS=Mannheimia succiniciproducens (strain
MBEL55E) GN=rplM PE=3 SV=2
Length = 142
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 77/116 (66%)
Query: 30 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVY 89
W V DA G+ LGRLA+++A+ ++GK K Y P+ D GD IV+NA + VTGRK +KVY
Sbjct: 15 WYVVDATGKTLGRLATELASRLRGKHKAEYTPHVDTGDYIIVINADKVAVTGRKETDKVY 74
Query: 90 YWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEH 145
YWHTGY+G +K+ T KE + R P I AV MLP+ L RKL+++ GS+H
Sbjct: 75 YWHTGYVGGIKQATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMFRKLKVYAGSQH 130
>sp|Q1MIP2|RL13_RHIL3 50S ribosomal protein L13 OS=Rhizobium leguminosarum bv. viciae
(strain 3841) GN=rplM PE=3 SV=1
Length = 154
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 82/119 (68%), Gaps = 1/119 (0%)
Query: 29 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 88
+W + DA+G V+GRLAS +A ++GK K T+ P+ DDGD IV+NA+ + TG+K +KV
Sbjct: 14 KWVIIDAEGLVVGRLASIIAMRLRGKHKATFTPHVDDGDNVIVINAEKVVFTGKKYSDKV 73
Query: 89 YYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHP 146
YYWHTGY G +KER+ ++ +E R P + KAV RM+PR L + + LR++ GS HP
Sbjct: 74 YYWHTGYAGGIKERSARQIIEGRFPERVLEKAVERMVPRGPLGRRQMKNLRVYAGSNHP 132
>sp|C4Z2W3|RL13_EUBE2 50S ribosomal protein L13 OS=Eubacterium eligens (strain ATCC 27750
/ VPI C15-48) GN=rplM PE=3 SV=1
Length = 142
Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/117 (52%), Positives = 76/117 (64%)
Query: 29 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 88
+W V DA LGRLASQVA V++GK+KPTY P D GD IV+NA + VTG+KL KV
Sbjct: 14 KWYVVDAADYTLGRLASQVAAVLRGKNKPTYTPFLDCGDNVIVINADKVKVTGKKLDQKV 73
Query: 89 YYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEH 145
YY H+ Y+G LKE TLKE ME+ P + I AV MLP+ L KL ++ G +H
Sbjct: 74 YYSHSDYVGGLKETTLKEMMEKKPEKVIELAVKGMLPKGPLGRQMFTKLHVYAGPDH 130
>sp|Q057I8|RL13_BUCCC 50S ribosomal protein L13 OS=Buchnera aphidicola subsp. Cinara
cedri (strain Cc) GN=rplM PE=3 SV=1
Length = 142
Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 76/116 (65%)
Query: 30 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVY 89
W DA ++LGRLASQV+ ++GK+KP + P+ D GD I++NA I VTG K KNK Y
Sbjct: 15 WYCIDATNKILGRLASQVSIFLRGKNKPEFTPHIDVGDYIIIINASKIVVTGNKEKNKFY 74
Query: 90 YWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEH 145
Y H+GY+G +K+ T K M PT I+KA+ MLP+ L +KL++FP ++H
Sbjct: 75 YHHSGYVGGIKKYTFKYMMLHHPTRIIKKAIKGMLPKGSLGQKIFKKLKVFPFNQH 130
>sp|Q67JX6|RL13_SYMTH 50S ribosomal protein L13 OS=Symbiobacterium thermophilum (strain T
/ IAM 14863) GN=rplM PE=3 SV=1
Length = 143
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 83/126 (65%)
Query: 29 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 88
+W V DA+G+ LGRLAS+VA +++GK KPT+ P+ D GD I++NA+ I VTG+K+ +KV
Sbjct: 15 KWYVVDAEGKTLGRLASKVAAILRGKHKPTFTPHVDCGDFVIIVNAEKIQVTGKKVTDKV 74
Query: 89 YYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFG 148
YY H+GY G K T ++ + R P + A+ MLP N+L RKL+++ G EHP
Sbjct: 75 YYRHSGYPGGQKATTFEQMIARRPERVLELAIKGMLPHNRLGRQMYRKLKVYAGPEHPHA 134
Query: 149 DRPLEP 154
+ EP
Sbjct: 135 AQKPEP 140
>sp|Q7VLF6|RL13_HAEDU 50S ribosomal protein L13 OS=Haemophilus ducreyi (strain 35000HP /
ATCC 700724) GN=rplM PE=3 SV=1
Length = 140
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 78/116 (67%)
Query: 30 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVY 89
W V DA G+ LGRLA+++A+ ++GK K Y P+ D GD IV+NA+ + VTG+K +K+Y
Sbjct: 13 WYVVDAAGKTLGRLATELASRLRGKHKAEYTPHVDTGDYIIVINAEKVVVTGKKETDKIY 72
Query: 90 YWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEH 145
YWHTGY+G +K+ T KE + R P I AV MLP+ L D RKL+++ G+ H
Sbjct: 73 YWHTGYVGGIKDATFKEMISRRPEAVIEIAVKGMLPKGPLGRDMFRKLKVYAGNTH 128
>sp|B5ZXZ6|RL13_RHILW 50S ribosomal protein L13 OS=Rhizobium leguminosarum bv. trifolii
(strain WSM2304) GN=rplM PE=3 SV=1
Length = 154
Score = 121 bits (304), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 81/119 (68%), Gaps = 1/119 (0%)
Query: 29 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 88
+W + DA+G V+GRLAS +A ++GK K T+ P+ DDGD IV+NA + TG+K +KV
Sbjct: 14 KWVIIDAEGLVVGRLASIIAMRLRGKHKATFTPHVDDGDNVIVINADKVVFTGKKYSDKV 73
Query: 89 YYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHP 146
YYWHTG+ G +KERT ++ +E R P + KAV RM+PR L + + LR++ GS HP
Sbjct: 74 YYWHTGFAGGIKERTARQIIEGRFPERVLEKAVERMVPRGPLGRRQMKNLRVYAGSNHP 132
>sp|Q73S31|RL13_MYCPA 50S ribosomal protein L13 OS=Mycobacterium paratuberculosis (strain
ATCC BAA-968 / K-10) GN=rplM PE=3 SV=1
Length = 147
Score = 121 bits (304), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 79/126 (62%)
Query: 30 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVY 89
W V DA VLGRLA A +++GK KPT+APN D GD IV+NA + +G+KL K+
Sbjct: 15 WYVIDATDVVLGRLAVAAANLLRGKHKPTFAPNVDGGDFVIVVNADKVAFSGQKLDKKLA 74
Query: 90 YWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFGD 149
Y H+GY G L+ RT+ E M++ P + A++ MLP+NKL RKLR++ G EHP
Sbjct: 75 YRHSGYPGGLRSRTIGELMQKHPDRVVADAIVGMLPKNKLSRQIQRKLRVYAGPEHPHTA 134
Query: 150 RPLEPY 155
+ PY
Sbjct: 135 QQPIPY 140
>sp|A0QKT3|RL13_MYCA1 50S ribosomal protein L13 OS=Mycobacterium avium (strain 104)
GN=rplM PE=3 SV=1
Length = 147
Score = 121 bits (304), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 79/126 (62%)
Query: 30 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVY 89
W V DA VLGRLA A +++GK KPT+APN D GD IV+NA + +G+KL K+
Sbjct: 15 WYVIDATDVVLGRLAVAAANLLRGKHKPTFAPNVDGGDFVIVVNADKVAFSGQKLDKKLA 74
Query: 90 YWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFGD 149
Y H+GY G L+ RT+ E M++ P + A++ MLP+NKL RKLR++ G EHP
Sbjct: 75 YRHSGYPGGLRSRTIGELMQKHPDRVVADAIVGMLPKNKLSRQIQRKLRVYAGPEHPHTA 134
Query: 150 RPLEPY 155
+ PY
Sbjct: 135 QQPIPY 140
>sp|B5EFM9|RL13_GEOBB 50S ribosomal protein L13 OS=Geobacter bemidjiensis (strain Bem /
ATCC BAA-1014 / DSM 16622) GN=rplM PE=3 SV=1
Length = 142
Score = 121 bits (303), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 81/117 (69%)
Query: 30 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVY 89
W + D +VLGR+A+++A V++GK+KPT+ P+ D GD IV+NA+ I +TGRKL +K Y
Sbjct: 15 WYLVDVDNKVLGRVATEIANVLRGKNKPTFTPSVDTGDFVIVVNAEKIALTGRKLADKTY 74
Query: 90 YWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHP 146
Y H+ Y G LKE T + +++ P E ++KAV MLP+NKL +KL+I+ G HP
Sbjct: 75 YSHSSYPGGLKEITAGKLLDKKPEELLKKAVKGMLPKNKLARHMLKKLKIYSGGAHP 131
>sp|Q6HPM6|RL13_BACHK 50S ribosomal protein L13 OS=Bacillus thuringiensis subsp.
konkukian (strain 97-27) GN=rplM PE=3 SV=1
Length = 145
Score = 121 bits (303), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 84/127 (66%)
Query: 29 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 88
+W V DA+GQ LGRLAS+VA++++GK+KPT+ P+ D GD I++NA+ I +TG KL +K+
Sbjct: 15 KWYVVDAEGQTLGRLASEVASILRGKNKPTFTPHVDTGDHVIIINAEKIHLTGNKLNDKI 74
Query: 89 YYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFG 148
YY HT + G LK+RT E P + + A+ MLP+ +L +KL ++ G+EHP
Sbjct: 75 YYRHTNHPGGLKQRTALEMRTNYPVQMLELAIKGMLPKGRLGRQVSKKLNVYAGAEHPHQ 134
Query: 149 DRPLEPY 155
+ E Y
Sbjct: 135 AQKPEVY 141
>sp|Q81J13|RL13_BACCR 50S ribosomal protein L13 OS=Bacillus cereus (strain ATCC 14579 /
DSM 31) GN=rplM PE=3 SV=1
Length = 145
Score = 121 bits (303), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 84/127 (66%)
Query: 29 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 88
+W V DA+GQ LGRLAS+VA++++GK+KPT+ P+ D GD I++NA+ I +TG KL +K+
Sbjct: 15 KWYVVDAEGQTLGRLASEVASILRGKNKPTFTPHVDTGDHVIIINAEKIHLTGNKLNDKI 74
Query: 89 YYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFG 148
YY HT + G LK+RT E P + + A+ MLP+ +L +KL ++ G+EHP
Sbjct: 75 YYRHTNHPGGLKQRTALEMRTNYPVQMLELAIKGMLPKGRLGRQVSKKLNVYAGAEHPHQ 134
Query: 149 DRPLEPY 155
+ E Y
Sbjct: 135 AQKPEVY 141
>sp|B9IZM7|RL13_BACCQ 50S ribosomal protein L13 OS=Bacillus cereus (strain Q1) GN=rplM
PE=3 SV=1
Length = 145
Score = 121 bits (303), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 84/127 (66%)
Query: 29 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 88
+W V DA+GQ LGRLAS+VA++++GK+KPT+ P+ D GD I++NA+ I +TG KL +K+
Sbjct: 15 KWYVVDAEGQTLGRLASEVASILRGKNKPTFTPHVDTGDHVIIINAEKIHLTGNKLNDKI 74
Query: 89 YYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFG 148
YY HT + G LK+RT E P + + A+ MLP+ +L +KL ++ G+EHP
Sbjct: 75 YYRHTNHPGGLKQRTALEMRTNYPVQMLELAIKGMLPKGRLGRQVSKKLNVYAGAEHPHQ 134
Query: 149 DRPLEPY 155
+ E Y
Sbjct: 135 AQKPEVY 141
>sp|B7HQX7|RL13_BACC7 50S ribosomal protein L13 OS=Bacillus cereus (strain AH187) GN=rplM
PE=3 SV=1
Length = 145
Score = 121 bits (303), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 84/127 (66%)
Query: 29 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 88
+W V DA+GQ LGRLAS+VA++++GK+KPT+ P+ D GD I++NA+ I +TG KL +K+
Sbjct: 15 KWYVVDAEGQTLGRLASEVASILRGKNKPTFTPHVDTGDHVIIINAEKIHLTGNKLNDKI 74
Query: 89 YYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFG 148
YY HT + G LK+RT E P + + A+ MLP+ +L +KL ++ G+EHP
Sbjct: 75 YYRHTNHPGGLKQRTALEMRTNYPVQMLELAIKGMLPKGRLGRQVSKKLNVYAGAEHPHQ 134
Query: 149 DRPLEPY 155
+ E Y
Sbjct: 135 AQKPEVY 141
>sp|B7HJJ0|RL13_BACC4 50S ribosomal protein L13 OS=Bacillus cereus (strain B4264) GN=rplM
PE=3 SV=1
Length = 145
Score = 121 bits (303), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 84/127 (66%)
Query: 29 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 88
+W V DA+GQ LGRLAS+VA++++GK+KPT+ P+ D GD I++NA+ I +TG KL +K+
Sbjct: 15 KWYVVDAEGQTLGRLASEVASILRGKNKPTFTPHVDTGDHVIIINAEKIHLTGNKLNDKI 74
Query: 89 YYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFG 148
YY HT + G LK+RT E P + + A+ MLP+ +L +KL ++ G+EHP
Sbjct: 75 YYRHTNHPGGLKQRTALEMRTNYPVQMLELAIKGMLPKGRLGRQVSKKLNVYAGAEHPHQ 134
Query: 149 DRPLEPY 155
+ E Y
Sbjct: 135 AQKPEVY 141
>sp|C1ET72|RL13_BACC3 50S ribosomal protein L13 OS=Bacillus cereus (strain 03BB102)
GN=rplM PE=3 SV=1
Length = 145
Score = 121 bits (303), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 84/127 (66%)
Query: 29 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 88
+W V DA+GQ LGRLAS+VA++++GK+KPT+ P+ D GD I++NA+ I +TG KL +K+
Sbjct: 15 KWYVVDAEGQTLGRLASEVASILRGKNKPTFTPHVDTGDHVIIINAEKIHLTGNKLNDKI 74
Query: 89 YYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFG 148
YY HT + G LK+RT E P + + A+ MLP+ +L +KL ++ G+EHP
Sbjct: 75 YYRHTNHPGGLKQRTALEMRTNYPVQMLELAIKGMLPKGRLGRQVSKKLNVYAGAEHPHQ 134
Query: 149 DRPLEPY 155
+ E Y
Sbjct: 135 AQKPEVY 141
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,995,633
Number of Sequences: 539616
Number of extensions: 3068824
Number of successful extensions: 10730
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 9915
Number of HSP's gapped (non-prelim): 754
length of query: 203
length of database: 191,569,459
effective HSP length: 112
effective length of query: 91
effective length of database: 131,132,467
effective search space: 11933054497
effective search space used: 11933054497
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)