Query 028816
Match_columns 203
No_of_seqs 141 out of 1092
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 04:10:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028816.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028816hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2d_N 50S ribosomal protein L 100.0 2.8E-61 9.5E-66 390.1 11.0 132 26-157 9-140 (140)
2 2ftc_H L13MT, MRP-L13, 39S rib 100.0 1.2E-60 4.1E-65 389.4 11.5 136 23-158 11-146 (148)
3 3r8s_J 50S ribosomal protein L 100.0 7.7E-61 2.6E-65 388.3 10.3 133 25-157 10-142 (142)
4 3f1f_N 50S ribosomal protein L 100.0 4.2E-60 1.4E-64 391.2 8.7 133 25-157 31-163 (163)
5 2zjr_G 50S ribosomal protein L 100.0 4.4E-59 1.5E-63 388.5 11.9 132 26-157 37-168 (174)
6 3bbo_L Ribosomal protein L13; 100.0 9.3E-57 3.2E-61 390.6 8.9 131 27-157 111-241 (250)
7 1j3a_A 50S ribosomal protein L 100.0 1.1E-48 3.7E-53 316.9 3.4 133 30-180 1-135 (142)
8 4b6a_O 60S ribosomal protein L 100.0 3.7E-48 1.3E-52 328.6 3.4 136 27-177 3-139 (199)
9 1vq8_J 50S ribosomal protein L 100.0 3.7E-46 1.3E-50 303.1 3.2 131 26-180 5-136 (145)
10 4a17_I RPL13A, 60S ribosomal p 100.0 4.8E-46 1.7E-50 315.5 2.5 138 28-180 3-141 (198)
11 3iz5_K 60S ribosomal protein L 100.0 1.2E-44 4.1E-49 308.4 0.8 134 27-177 8-144 (206)
12 2zkr_j 60S ribosomal protein L 100.0 4.8E-44 1.6E-48 304.2 2.3 128 27-178 3-140 (203)
13 3jyw_M 60S ribosomal protein L 100.0 1.2E-43 4.2E-48 296.6 2.2 132 31-179 1-135 (178)
14 3jv7_A ADH-A; dehydrogenase, n 48.8 43 0.0015 28.1 6.7 44 8-52 150-195 (345)
15 3koj_A Uncharacterized protein 40.0 16 0.00056 27.3 2.4 30 28-73 52-81 (108)
16 4ej6_A Putative zinc-binding d 37.0 65 0.0022 27.6 6.1 41 9-50 164-204 (370)
17 2h6e_A ADH-4, D-arabinose 1-de 36.5 76 0.0026 26.6 6.4 36 15-52 154-194 (344)
18 3two_A Mannitol dehydrogenase; 35.6 91 0.0031 26.2 6.7 39 12-51 161-199 (348)
19 3goh_A Alcohol dehydrogenase, 34.1 77 0.0026 26.2 5.9 44 7-51 122-165 (315)
20 3s2e_A Zinc-containing alcohol 33.6 1.2E+02 0.0042 25.2 7.2 42 9-51 148-189 (340)
21 1h2b_A Alcohol dehydrogenase; 31.3 1.1E+02 0.0037 26.0 6.5 39 14-53 171-211 (359)
22 1e3j_A NADP(H)-dependent ketos 30.7 1E+02 0.0035 25.9 6.2 40 10-50 151-190 (352)
23 1rjw_A ADH-HT, alcohol dehydro 28.6 1.4E+02 0.0049 24.9 6.8 38 12-50 149-186 (339)
24 1pl8_A Human sorbitol dehydrog 27.8 1.3E+02 0.0043 25.4 6.3 40 10-50 154-193 (356)
25 4dam_A Single-stranded DNA-bin 27.6 34 0.0012 26.1 2.5 29 29-73 63-91 (128)
26 4b7c_A Probable oxidoreductase 27.3 97 0.0033 25.7 5.5 44 7-50 128-172 (336)
27 1jvb_A NAD(H)-dependent alcoho 27.1 1.5E+02 0.0052 24.7 6.7 38 14-51 157-194 (347)
28 3vdy_A SSB, single-stranded DN 27.1 35 0.0012 25.0 2.3 23 39-73 56-78 (116)
29 3stb_C RNA-editing complex pro 26.9 57 0.0019 26.1 3.7 32 27-73 84-115 (148)
30 3m6i_A L-arabinitol 4-dehydrog 24.2 70 0.0024 27.0 4.1 40 11-51 163-202 (363)
31 3bcv_A Putative glycosyltransf 24.0 1.7E+02 0.0057 22.2 5.9 24 12-35 19-42 (240)
32 3ulp_A Single-strand binding p 24.0 41 0.0014 25.0 2.2 29 29-73 54-83 (124)
33 1uuf_A YAHK, zinc-type alcohol 23.8 1.8E+02 0.0063 24.8 6.7 39 12-51 179-217 (369)
34 2vw9_A Single-stranded DNA bin 23.8 47 0.0016 25.2 2.6 23 39-73 55-77 (134)
35 1z9f_A Single-strand binding p 22.7 49 0.0017 25.9 2.6 29 29-73 63-91 (153)
36 1eqq_A Single stranded DNA bin 22.3 46 0.0016 26.8 2.4 27 30-72 55-81 (178)
37 1qvc_A Single stranded DNA bin 22.1 52 0.0018 25.3 2.6 28 29-72 53-80 (145)
38 1vj0_A Alcohol dehydrogenase, 22.0 1.4E+02 0.0049 25.4 5.7 43 7-50 174-217 (380)
39 3afp_A Single-stranded DNA-bin 21.9 52 0.0018 26.1 2.6 29 29-73 53-81 (168)
40 1txy_A Primosomal replication 21.3 31 0.0011 25.0 1.0 28 31-72 48-75 (104)
41 4eye_A Probable oxidoreductase 21.3 1.8E+02 0.0063 24.3 6.1 44 7-50 138-182 (342)
42 3ip1_A Alcohol dehydrogenase, 21.0 1.9E+02 0.0064 24.9 6.2 44 6-50 190-235 (404)
43 3tqy_A Single-stranded DNA-bin 20.9 56 0.0019 25.6 2.6 23 39-73 62-84 (158)
44 2khr_A Protein MBTH; sideropho 20.3 71 0.0024 22.8 2.7 17 60-76 7-24 (74)
45 2hcy_A Alcohol dehydrogenase 1 20.2 2.4E+02 0.008 23.5 6.5 39 12-50 154-192 (347)
No 1
>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N 2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N 2wro_N 2wrr_N 2x9s_N 2x9u_N ...
Probab=100.00 E-value=2.8e-61 Score=390.09 Aligned_cols=132 Identities=36% Similarity=0.678 Sum_probs=128.7
Q ss_pred CCceEEEEeCCCCcchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEEeCcccccccccccceeEeeecccCCCccccChh
Q 028816 26 EGLRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLK 105 (203)
Q Consensus 26 ~~r~W~vIDA~gqvLGRLAS~VAk~L~GKhKp~ytP~~d~Gd~VVVVNaekI~iTG~K~~~K~Y~~htgYpGglk~~~~~ 105 (203)
-.|+|+||||+||+||||||.||++|+|||||+|||++||||+|||||||+|+|||+||++|.||+|||||||+++++++
T Consensus 9 ~~r~w~viDA~~~~LGRLAs~iAk~L~GKhKp~ytP~~d~Gd~VVViNaeki~~tG~k~~~K~yy~htgypGglk~~~~~ 88 (140)
T 3v2d_N 9 VEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTRYSGYPGGLKKIPLE 88 (140)
T ss_dssp CCCCEEEEECSSSBTTHHHHHHHHHHHTTTSTTCCTTSCCCCEEEEECGGGCBCCTTHHHHCEEEEECSSTTCEEEEEHH
T ss_pred ccceEEEEeCCCCchHHHHHHHHHHHcCCCCCccCCCccCCCEEEEEeCcceEccCchhhheeeEEecccCCcceeccHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcChhHHHHHHHhccCCCCCchhhhhcCceecCCCCCCCCCCCCcceec
Q 028816 106 EQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFGDRPLEPYVM 157 (203)
Q Consensus 106 ~~~~r~P~~Ii~rAVrGMLPkn~lr~~~l~rLkvy~G~~hp~~~qk~~~~~~ 157 (203)
++++++|++||++||+||||+|.+|+.+|+||+||+|++|||++|+|+++++
T Consensus 89 ~~~~r~P~~ii~~aVrGMLPk~~lgr~~l~rLkVy~G~~hph~aq~p~~~~~ 140 (140)
T 3v2d_N 89 KMLATHPERVLEHAVKGMLPKGPLGRRLFKRLKVYAGPDHPHQAQRPEKLEV 140 (140)
T ss_dssp HHHHHCTHHHHHHHHHHTSCSSHHHHHHHHTEEECSSSCCSCGGGCCEEECC
T ss_pred HhhhhCHHHHHHHHHHhcCCCChhHHHHHhCCEEeCCCCCCcccCCCeecCC
Confidence 9999999999999999999999999999999999999999999999987764
No 2
>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=1.2e-60 Score=389.40 Aligned_cols=136 Identities=31% Similarity=0.459 Sum_probs=131.7
Q ss_pred cccCCceEEEEeCCCCcchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEEeCcccccccccccceeEeeecccCCCcccc
Q 028816 23 INLEGLRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKER 102 (203)
Q Consensus 23 ~~~~~r~W~vIDA~gqvLGRLAS~VAk~L~GKhKp~ytP~~d~Gd~VVVVNaekI~iTG~K~~~K~Y~~htgYpGglk~~ 102 (203)
+....|+|+||||+||+||||||.||++|+|||||+|||++||||+|||||||+|+|||+||++|.||+|||||||++++
T Consensus 11 ~~~~~r~w~viDA~g~~LGRLAs~iA~~L~GKhKp~ytP~~D~Gd~VVViNaeki~~tG~k~~~K~yy~htg~pGg~k~~ 90 (148)
T 2ftc_H 11 WATFARIWYLLDGKMQPPGKLAAMASIRLQGLHKPVYHALSDCGDHVVIMNTRHIAFSGNKWEQKVYSSHTGYPGGFRQV 90 (148)
T ss_pred hhcccCcEEEEeCCCCchHHHHHHHHHHHhccCCCCcCccccCCCEEEEEeceeeEeccchHhhheeeeeeCCcCCceec
Confidence 44557999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHhhcChhHHHHHHHhccCCCCCchhhhhcCceecCCCCCCCCCCCCcceecC
Q 028816 103 TLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFGDRPLEPYVMP 158 (203)
Q Consensus 103 ~~~~~~~r~P~~Ii~rAVrGMLPkn~lr~~~l~rLkvy~G~~hp~~~qk~~~~~~p 158 (203)
+++++++++|++||++||+||||+|.+|+.+|+||+||+|++|||++|+|+.++++
T Consensus 91 ~~~~~~~r~P~~ii~~aVrGMLPkn~lgr~~l~rLkVy~G~~hP~~aq~p~~~~i~ 146 (148)
T 2ftc_H 91 TAAQLHLRDPVAIVKLAIYGMLPKNLHRRTMMERLHLFPDEYIPEDILKNLVEELP 146 (148)
T ss_pred cHHHHhhcCHHHHHHHHHHhcCCCCchHHHHHhCcEEeCCCCCChHHhCCeeeccC
Confidence 99999999999999999999999999999999999999999999999999888874
No 3
>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ...
Probab=100.00 E-value=7.7e-61 Score=388.30 Aligned_cols=133 Identities=41% Similarity=0.671 Sum_probs=129.0
Q ss_pred cCCceEEEEeCCCCcchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEEeCcccccccccccceeEeeecccCCCccccCh
Q 028816 25 LEGLRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTL 104 (203)
Q Consensus 25 ~~~r~W~vIDA~gqvLGRLAS~VAk~L~GKhKp~ytP~~d~Gd~VVVVNaekI~iTG~K~~~K~Y~~htgYpGglk~~~~ 104 (203)
.-.|+|+||||+||+||||||.||++|+|||||+|||++||||+|||||||+|+|||+||++|.||+|||||||++++++
T Consensus 10 ~~~r~W~viDA~g~~LGRLAs~iAk~L~GKhKp~ytP~~d~Gd~VVViNaeki~~tG~k~~~K~yy~htgypGg~k~~~~ 89 (142)
T 3r8s_J 10 TVKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATF 89 (142)
T ss_dssp TCCCCEEEEECTTCBHHHHHHHHHHHHHTTTSTTCCTTSCCCCEEEEECGGGCBCCTTHHHHCBCCEECSSTTCEECCBH
T ss_pred hccCcEEEEeCCCCchHHHHHHHHHHHcCCCCCccCCCccCCCEEEEEeCcccCccCchhhceEEEEecCcCCCccccCH
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhcChhHHHHHHHhccCCCCCchhhhhcCceecCCCCCCCCCCCCcceec
Q 028816 105 KEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFGDRPLEPYVM 157 (203)
Q Consensus 105 ~~~~~r~P~~Ii~rAVrGMLPkn~lr~~~l~rLkvy~G~~hp~~~qk~~~~~~ 157 (203)
+++++++|++||++||+||||+|.+|+.+|+||+||+|++|||++|+|+++++
T Consensus 90 ~~~~~r~P~~ii~~aVrGMLPkn~lgr~~l~rLkVy~G~~hph~aq~p~~l~~ 142 (142)
T 3r8s_J 90 EEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLKVYAGNEHNHAAQQPQVLDI 142 (142)
T ss_dssp HHHHHHCSHHHHHHHHHHHSCSSHHHHHHHTTEEECSSSCCSCGGGCCEECCC
T ss_pred HHHHhhCHHHHHHHHHHhcCCCChhHHHHHhCCEEECCCCCCcccCCCeecCC
Confidence 99999999999999999999999999999999999999999999999987753
No 4
>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N
Probab=100.00 E-value=4.2e-60 Score=391.16 Aligned_cols=133 Identities=36% Similarity=0.668 Sum_probs=128.0
Q ss_pred cCCceEEEEeCCCCcchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEEeCcccccccccccceeEeeecccCCCccccCh
Q 028816 25 LEGLRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTL 104 (203)
Q Consensus 25 ~~~r~W~vIDA~gqvLGRLAS~VAk~L~GKhKp~ytP~~d~Gd~VVVVNaekI~iTG~K~~~K~Y~~htgYpGglk~~~~ 104 (203)
.-.|+|+||||+||+||||||.||++|+|||||+|||++||||+|||||||+|+|||+||++|.||+|||||||++++++
T Consensus 31 ~~~r~W~VIDA~g~~LGRLAs~VAk~L~GKhKP~ytP~~D~GD~VVVINaekI~iTG~K~~~K~yy~htgypGglk~~t~ 110 (163)
T 3f1f_N 31 QVEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTRYSGYPGGLKKIPL 110 (163)
T ss_dssp CCCCCBCBBCCTTCBHHHHHHHHHHHHSCTTSTTCCTTTCCCCBCEECCGGGCBCSTTHHHHCEECCBCSSTTCBCCEEH
T ss_pred cccCcEEEEeCCCCchHHHHHHHHHHHhcCCCCccCCcccCCCEEEEEeCcccccCCchhhheeeEEecCcCCcceeeeh
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhcChhHHHHHHHhccCCCCCchhhhhcCceecCCCCCCCCCCCCcceec
Q 028816 105 KEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFGDRPLEPYVM 157 (203)
Q Consensus 105 ~~~~~r~P~~Ii~rAVrGMLPkn~lr~~~l~rLkvy~G~~hp~~~qk~~~~~~ 157 (203)
+++++++|++||++||+||||+|.+|+.+|+||+||+|++|||++|+|+++++
T Consensus 111 ~~~~~r~P~~Ii~~AVrGMLPkn~lGr~~l~rLkVY~G~~hPh~aQ~P~~l~~ 163 (163)
T 3f1f_N 111 EKMLATHPERVLEHAVKGMLPKGPLGRRLFKRLKVYAGPDHPHQAQRPEKLEV 163 (163)
T ss_dssp HHHHHSSCHHHHHHHHHTTSCSSHHHHHHHHTCEECSSSCCCCCSCCCBCC--
T ss_pred HHhhhcCHHHHHHHHHHhcCCCChhHHHHHhCCEEECCCCCCcccCCCeecCC
Confidence 99999999999999999999999999999999999999999999999987764
No 5
>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H* 1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 3pio_G* 3pip_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K
Probab=100.00 E-value=4.4e-59 Score=388.48 Aligned_cols=132 Identities=36% Similarity=0.677 Sum_probs=129.5
Q ss_pred CCceEEEEeCCCCcchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEEeCcccccccccccceeEeeecccCCCccccChh
Q 028816 26 EGLRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLK 105 (203)
Q Consensus 26 ~~r~W~vIDA~gqvLGRLAS~VAk~L~GKhKp~ytP~~d~Gd~VVVVNaekI~iTG~K~~~K~Y~~htgYpGglk~~~~~ 105 (203)
-.|+|+||||+||+||||||.||++|+|||||+|||++||||+|||||||+|+|||+||++|.||+|||||||+++++++
T Consensus 37 ~~r~W~vIDA~g~~LGRLAs~IAk~L~GKhKP~ytP~~D~GD~VVVINAeki~lTG~K~~~K~yy~htgypGGlk~~~~~ 116 (174)
T 2zjr_G 37 DEQNWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDDKVYTRYTGYQGGLKTETAR 116 (174)
T ss_dssp SCCCEEEEECTTSBHHHHHHHHHHHHHCSSCSSCCSSSCCCCEEEEECCTTCBCSSCSSSSCEEEECCSSCSSCCEEEES
T ss_pred ccccEEEEeCCCCchHHHHHHHHHHHhccCCCccCccccCCCEEEEEeCeeeEeccchhhceEEEEecCcCCCcccccHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcChhHHHHHHHhccCCCCCchhhhhcCceecCCCCCCCCCCCCcceec
Q 028816 106 EQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFGDRPLEPYVM 157 (203)
Q Consensus 106 ~~~~r~P~~Ii~rAVrGMLPkn~lr~~~l~rLkvy~G~~hp~~~qk~~~~~~ 157 (203)
++++++|++||++||+||||+|.+|+++|+||+||+|++|||++|+|+.+++
T Consensus 117 ~~~~r~P~~Ii~~AVrGMLPkn~lGr~~l~rLkVy~G~~hph~aqkp~~l~~ 168 (174)
T 2zjr_G 117 EALSKHPERVIEHAVFGMLPKGRQGRAMHTRLKVYAGETHPHSAQKPQVLKT 168 (174)
T ss_dssp TTTTSCHHHHHHHHHGGGSCCSHHHHHHHTTCEECSCSTGGGGSCCSCCCCC
T ss_pred HHhhcChHHHHHHHHHhcCCCChhHHHHHhCeEEECCCCCChhccCCeEEec
Confidence 9999999999999999999999999999999999999999999999988886
No 6
>3bbo_L Ribosomal protein L13; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=9.3e-57 Score=390.62 Aligned_cols=131 Identities=35% Similarity=0.597 Sum_probs=124.2
Q ss_pred CceEEEEeCCCCcchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEEeCcccccccccccceeEeeecccCCCccccChhH
Q 028816 27 GLRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKE 106 (203)
Q Consensus 27 ~r~W~vIDA~gqvLGRLAS~VAk~L~GKhKp~ytP~~d~Gd~VVVVNaekI~iTG~K~~~K~Y~~htgYpGglk~~~~~~ 106 (203)
.|+||||||+||+||||||.||++|+|||||+||||+||||+|||||||+|+|||+||++|.|++|||||||++++++++
T Consensus 111 ~r~W~VIDA~g~vLGRLAS~IAk~LrGKhKP~ytP~vD~GD~VVVINAeKI~lTG~K~~~K~Y~rHsgyPGGlK~~t~~~ 190 (250)
T 3bbo_L 111 DKKWYVVDATDLILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKKRTQKLYRRHSGRPGGLKEETFDQ 190 (250)
T ss_dssp -CCCCEECCSSCCSSTTHHHHTTTTTTTTTTCCCTTSCCSCCCEESCCSSCCCCSGGGGTCCCBCCCSSSSCCCBCCHHH
T ss_pred cceEEEEeCCCCchHHHHHHHHHHHccCCCCccCccccCCCEEEEEecceEEecCChhhceEEEEecCcCCCcccccHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcChhHHHHHHHhccCCCCCchhhhhcCceecCCCCCCCCCCCCcceec
Q 028816 107 QMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFGDRPLEPYVM 157 (203)
Q Consensus 107 ~~~r~P~~Ii~rAVrGMLPkn~lr~~~l~rLkvy~G~~hp~~~qk~~~~~~ 157 (203)
+++++|++||++||+||||+|.+|+.+|+||+||+|.+|||++|+++.+++
T Consensus 191 l~~r~PerIi~kAVrGMLPkn~lGr~~lkrLkVY~G~~HPh~aQkp~~l~i 241 (250)
T 3bbo_L 191 LQKRIPERIIEHAVRGMLPKGRLGRYLFNHLKVYKGAEHPHQAQQPIDLPL 241 (250)
T ss_dssp HTTSCTTHHHHHHHHTTSCSSSSHHHHHTTCCCCSSSCCSCTTSCC-----
T ss_pred hhhcChHHHHHHHHHhcCCCCchHHHHHhCcEEeCCCCCCHHHcCCeeech
Confidence 999999999999999999999999999999999999999999999866554
No 7
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1
Probab=100.00 E-value=1.1e-48 Score=316.91 Aligned_cols=133 Identities=26% Similarity=0.401 Sum_probs=109.5
Q ss_pred EEEEeCCCCcchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEEeCcccccccccccceeEeeecccCCCccc-cChhHHh
Q 028816 30 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKE-RTLKEQM 108 (203)
Q Consensus 30 W~vIDA~gqvLGRLAS~VAk~L~GKhKp~ytP~~d~Gd~VVVVNaekI~iTG~K~~~K~Y~~htgYpGglk~-~~~~~~~ 108 (203)
|+||||+||+||||||.||++|+ |||+|||||||+|+|||+|+++|.||+|||||||++. ++ ++++
T Consensus 1 W~viDA~g~~LGRLAs~vAk~L~------------~Gd~VVViNaeki~iTG~k~~~K~yy~h~g~~gg~~~~~~-~~~~ 67 (142)
T 1j3a_A 1 MRIINADGLILGRLASRVAKMLL------------EGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRR-GPFY 67 (142)
T ss_dssp CEEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHHHC--------------C
T ss_pred CEEEeCCCCchHHHHHHHHHHHh------------cCCEEEEEeCeeeEecccHHhheeeeeecCCCCCCcCCcc-Cccc
Confidence 99999999999999999999999 9999999999999999999999999999999999766 77 9999
Q ss_pred hcChhHHHHHHHhccCC-CCCchhhhhcCceecCCCCCCCCCCCCcceecCccchhhccccchhhHHHHHHHH
Q 028816 109 ERDPTEAIRKAVLRMLP-RNKLRDDRDRKLRIFPGSEHPFGDRPLEPYVMPPRRVRELRPRVRRAMIREQKKA 180 (203)
Q Consensus 109 ~r~P~~Ii~rAVrGMLP-kn~lr~~~l~rLkvy~G~~hp~~~qk~~~~~~pp~~~r~~r~~~~r~~~~~~~~~ 180 (203)
+++|++||++||+|||| +|.+|+++|+||+||+|+||||++|+|+.+ | .+.+ .|+. .|+||.+-.-+
T Consensus 68 ~r~P~~ii~~aVrGMLP~k~~lgr~~l~rLkVy~G~~hp~~aqkp~~~--~-~a~~-~~~~-~~k~~~lg~ls 135 (142)
T 1j3a_A 68 PKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETI--V-EAHV-SRLS-RPKYVTVGEVA 135 (142)
T ss_dssp CCSHHHHHHHHHHTTTTTTSHHHHHHHTTEEECSSCCGGGTTSCCBCC--G-GGBG-GGSS-SCCEEEHHHHH
T ss_pred ccCHHHHHHHHHHhhccCCCHHHHHHHhCcEEeCCCCCCccccCcEec--c-HHHh-hccC-CCCeEEHHHHH
Confidence 99999999999999999 788899999999999999999999998543 3 3444 5654 78888765443
No 8
>4b6a_O 60S ribosomal protein L16-A; large ribosomal subunit, ribosome biogenesis, ribosome matur factor, ribosome; 8.10A {Saccharomyces cerevisiae} PDB: 3izc_K 3izs_K 3o58_P 3o5h_P 3u5e_O 3u5i_O 1s1i_M
Probab=100.00 E-value=3.7e-48 Score=328.60 Aligned_cols=136 Identities=26% Similarity=0.361 Sum_probs=127.6
Q ss_pred CceEEEEeCCCCcchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEEeCcccccccccccceeEeeecccCCCccccChhH
Q 028816 27 GLRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKE 106 (203)
Q Consensus 27 ~r~W~vIDA~gqvLGRLAS~VAk~L~GKhKp~ytP~~d~Gd~VVVVNaekI~iTG~K~~~K~Y~~htgYpGglk~~~~~~ 106 (203)
+..|+||||+|++||||||.||+.|+ .||+|||||||+|+|||+|+++|.||+|||||||++..++++
T Consensus 3 ~~~~vVIDA~g~vLGRLAS~VAk~L~------------~Gd~VVVVNaeki~iTG~k~~~K~yy~h~g~~gg~~~~~~~~ 70 (199)
T 4b6a_O 3 SQPVVVIDAKDHLLGRLASTIAKQLL------------NGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGP 70 (199)
T ss_dssp CCSEEEEECTTBBHHHHHHHHHHHHH------------TTCEEEEECGGGCEEESCHHHHHHHHHHHHTCCCTTCTTTSC
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhc------------CCCEEEEEEchheEEeCcHHHHHHHhhccccccccccCCHHH
Confidence 36899999999999999999999999 799999999999999999999999999999999999999999
Q ss_pred HhhcChhHHHHHHHhccCC-CCCchhhhhcCceecCCCCCCCCCCCCcceecCccchhhccccchhhHHHHH
Q 028816 107 QMERDPTEAIRKAVLRMLP-RNKLRDDRDRKLRIFPGSEHPFGDRPLEPYVMPPRRVRELRPRVRRAMIREQ 177 (203)
Q Consensus 107 ~~~r~P~~Ii~rAVrGMLP-kn~lr~~~l~rLkvy~G~~hp~~~qk~~~~~~pp~~~r~~r~~~~r~~~~~~ 177 (203)
+++++|++||++||+|||| +|.+|+.+|++|+||+|.||||++|++ ++ .|.+++++|+++.|+||++-
T Consensus 71 ~~~r~P~~il~~aVrGMLP~K~~lGr~~l~rLkVy~G~~hph~aqk~--~v-vp~Al~~~~lkp~~Ky~~lg 139 (199)
T 4b6a_O 71 FHFRAPSRILYKAIRGMVSHKTARGKAALERLKIFEGIPPPYDKKKR--VV-VPQALRVLRLKPGRKYTTLG 139 (199)
T ss_dssp CCCCSHHHHHHHHHHTTSCTTSHHHHHHHHTEEECSSCCSGGGGSCC--BB-CGGGBHHHHSCTTCCEEEHH
T ss_pred HhhcCcHHHHHHHHhccCCCCChhhhHHHhccEEeCCCCCCcccCCC--Ee-cchHHHhhccCCCCCeEEhh
Confidence 9999999999999999999 577888999999999999999999987 44 47999999999999887653
No 9
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...
Probab=100.00 E-value=3.7e-46 Score=303.12 Aligned_cols=131 Identities=22% Similarity=0.244 Sum_probs=117.4
Q ss_pred CCceEEEEeCCCCcchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEEeCcccccccccccceeEeeecccCCCccccChh
Q 028816 26 EGLRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLK 105 (203)
Q Consensus 26 ~~r~W~vIDA~gqvLGRLAS~VAk~L~GKhKp~ytP~~d~Gd~VVVVNaekI~iTG~K~~~K~Y~~htgYpGglk~~~~~ 105 (203)
+.++|+||||+||+||||||.||++|+ |||+|||||||+|+|||+|+++|.||+||||||+ +++
T Consensus 5 ~~~~w~viDA~g~~LGRLAs~vAk~L~------------~Gd~VVViNaeki~iTG~k~~~K~yy~htg~~g~----~~~ 68 (145)
T 1vq8_J 5 EFDADVIVDARDCIMGRVASQVAEQAL------------DGETVAVVNAERAVITGREEQIVEKYEKRVDIGN----DNG 68 (145)
T ss_dssp CCCCSEEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHHHHHCCC----SSC
T ss_pred ccccEEEEeCCCCchHHHHHHHHHHHh------------cCCEEEEEeCEeeEecchhhhheeeeEEeCCCCC----CHH
Confidence 457899999999999999999999999 9999999999999999999999999999999998 889
Q ss_pred HHhhcChhHHHHHHHhccCC-CCCchhhhhcCceecCCCCCCCCCCCCcceecCccchhhccccchhhHHHHHHHH
Q 028816 106 EQMERDPTEAIRKAVLRMLP-RNKLRDDRDRKLRIFPGSEHPFGDRPLEPYVMPPRRVRELRPRVRRAMIREQKKA 180 (203)
Q Consensus 106 ~~~~r~P~~Ii~rAVrGMLP-kn~lr~~~l~rLkvy~G~~hp~~~qk~~~~~~pp~~~r~~r~~~~r~~~~~~~~~ 180 (203)
++++++|++||++||+|||| ||++|+++|+||+||+|+||| |++ .++|.+ .+ .|+. .|+||.+-.-+
T Consensus 69 ~~~~r~P~~i~~~aVrGMLP~K~~lgr~~l~rLkVy~G~~~p---~k~--~vv~~a-~~-~~l~-~~k~~~lg~ls 136 (145)
T 1vq8_J 69 YFYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNPYD---EDG--EVLDGT-SL-DRLS-NIKFVTLGEIS 136 (145)
T ss_dssp CCCCCSHHHHHHHHHHTTTTTTSHHHHHHHHTEEECSSCCSS---SCC--BCCTTC-BC-CTTS-CCSEEEHHHHH
T ss_pred HHhhcChHHHHHHHHHhhcCCCCHHHHHHHhCeEEECCCCCC---CCc--eeeehh-hh-hccC-CCCeEEHHHHH
Confidence 99999999999999999999 888999999999999999999 544 565544 44 5664 78888775544
No 10
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_I 4a1c_I 4a1e_I
Probab=100.00 E-value=4.8e-46 Score=315.45 Aligned_cols=138 Identities=26% Similarity=0.308 Sum_probs=127.2
Q ss_pred ceEEEEeCCCCcchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEEeCcccccccccccceeEeeecccCCCccccChhHH
Q 028816 28 LRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQ 107 (203)
Q Consensus 28 r~W~vIDA~gqvLGRLAS~VAk~L~GKhKp~ytP~~d~Gd~VVVVNaekI~iTG~K~~~K~Y~~htgYpGglk~~~~~~~ 107 (203)
++|+||||+||+||||||.||++|+ |||+|||||||+|+|||++|++|.||+|+.++++....+.+++
T Consensus 3 ~~w~VIDA~g~~LGRLAs~VAk~L~------------~GD~VVVINAekI~iTG~K~~~K~yy~~~l~~~~~~~~~~g~~ 70 (198)
T 4a17_I 3 DKLVVIDAKGHLLGRLASYVAKELL------------SGQRIVVVRTEAINISGSLFRNRVKFSEFLNKWMNHNPRRGVQ 70 (198)
T ss_dssp SSCEEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHHHHTCCCSSCTTSSCC
T ss_pred ccEEEEeCCCCchHHHHHHHHHHHh------------CCCEEEEEcCccccccCchhhheeeeeeccccccCCCCccccc
Confidence 6899999999999999999999999 9999999999999999999999999999988998887788999
Q ss_pred hhcChhHHHHHHHhccCCC-CCchhhhhcCceecCCCCCCCCCCCCcceecCccchhhccccchhhHHHHHHHH
Q 028816 108 MERDPTEAIRKAVLRMLPR-NKLRDDRDRKLRIFPGSEHPFGDRPLEPYVMPPRRVRELRPRVRRAMIREQKKA 180 (203)
Q Consensus 108 ~~r~P~~Ii~rAVrGMLPk-n~lr~~~l~rLkvy~G~~hp~~~qk~~~~~~pp~~~r~~r~~~~r~~~~~~~~~ 180 (203)
++++|++||++||+||||+ |.+|+.+|+||+||+|+||||++|+. ++ .|.+++++|+.+.|+||.+-.=+
T Consensus 71 ~~r~P~rIi~~AVrGMLPkK~~lGr~~l~rLkVy~G~~hph~aqk~--~v-vp~al~v~rl~~~rk~~~lg~ls 141 (198)
T 4a17_I 71 HFRAPSRIFWRAVRGMLPHKTPKGAAALERLKIFEGIPTPYDRVKK--QV-VVDALKVQRLRNSRPVCKLGDLS 141 (198)
T ss_dssp CCCSHHHHHHHHHHTTTTTTSHHHHHHHHHCEECSSCCGGGTTSCC--BC-CGGGBHHHHSCTTSCEEEHHHHH
T ss_pred cccCHHHHHHHHHhccCCCCChhHHHHHhCcEEecCCCCChhhccc--cc-cchHhhhhhcCCCCCeEEHHHHH
Confidence 9999999999999999996 77888999999999999999999975 44 47999999999999888654433
No 11
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_K
Probab=100.00 E-value=1.2e-44 Score=308.44 Aligned_cols=134 Identities=22% Similarity=0.380 Sum_probs=119.6
Q ss_pred CceEEEEeCCCCcchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEEeCcccccccccccceeEeeecccCCCcccc--Ch
Q 028816 27 GLRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKER--TL 104 (203)
Q Consensus 27 ~r~W~vIDA~gqvLGRLAS~VAk~L~GKhKp~ytP~~d~Gd~VVVVNaekI~iTG~K~~~K~Y~~htgYpGglk~~--~~ 104 (203)
.|+|+||||+||+||||||.||++|+ |||+|||||||+|+|||++|++|.||+| |++..... ++
T Consensus 8 ~r~W~VIDA~g~~LGRLAS~VAk~Ll------------~Gd~VVVINAekI~iTG~K~~~K~yy~~--~l~~~~~~np~~ 73 (206)
T 3iz5_K 8 CAKRVVVDARHHMLGRLASIVAKELL------------NGQRVVVVRCEEICMSGGLVRQKMKYLR--FLRKRMNTKPSH 73 (206)
T ss_dssp CSSCCEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHH--HHHHTTCSCSSS
T ss_pred ceeEEEEeCCCCchHHHHHHHHHHHh------------CCCEEEEEcCcccCcCCchHhhhhheee--ecceeecCCCcc
Confidence 58999999999999999999999999 9999999999999999999999999988 65433222 46
Q ss_pred hHHhhcChhHHHHHHHhccCCC-CCchhhhhcCceecCCCCCCCCCCCCcceecCccchhhccccchhhHHHHH
Q 028816 105 KEQMERDPTEAIRKAVLRMLPR-NKLRDDRDRKLRIFPGSEHPFGDRPLEPYVMPPRRVRELRPRVRRAMIREQ 177 (203)
Q Consensus 105 ~~~~~r~P~~Ii~rAVrGMLPk-n~lr~~~l~rLkvy~G~~hp~~~qk~~~~~~pp~~~r~~r~~~~r~~~~~~ 177 (203)
+++++++|++||++||+||||+ |.+|+.+|+||+||+|+||||++|+. ++ .|.++++.|+.|.|+||.+-
T Consensus 74 ~~~~~r~P~~Il~~AVrGMLPkk~~lGr~~l~rLkVy~G~~hp~~aqk~--~v-vP~al~v~~l~p~rk~~~lg 144 (206)
T 3iz5_K 74 GPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKR--MV-IPDALKVLRLQPGHRYCLLG 144 (206)
T ss_dssp CSCCCCSHHHHHHHHHHHHSCTTSHHHHHHHTTEEEESSCCTTCCSCCB--CC-TTTBCBTTBCSSSSCEEEHH
T ss_pred cchhhcCHHHHHHHHHhccCCCCChhHHHHHhCCEEeCCCCCChhhccc--cc-CchHHhhhhcCCCCCeEEHH
Confidence 8999999999999999999998 67788999999999999999999975 44 47899999999999888543
No 12
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=4.8e-44 Score=304.20 Aligned_cols=128 Identities=27% Similarity=0.432 Sum_probs=113.0
Q ss_pred CceEEEEeCCCCcchhhHHHHHH-HHhCCCCCCCCCCCCCCCEEEEEeCcccccccccccceeEe-eec-------ccCC
Q 028816 27 GLRWRVFDAKGQVLGRLASQVAT-VVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYY-WHT-------GYIG 97 (203)
Q Consensus 27 ~r~W~vIDA~gqvLGRLAS~VAk-~L~GKhKp~ytP~~d~Gd~VVVVNaekI~iTG~K~~~K~Y~-~ht-------gYpG 97 (203)
.++|+||||+||+||||||.||+ +|+ ||+|||||||+|+|||++|++|.|| +|+ ||||
T Consensus 3 ~r~w~VIDA~g~~LGRLAS~VAk~lL~-------------G~~VVVINaeki~iTG~k~~~K~yy~~h~~~~~~~n~~~G 69 (203)
T 2zkr_j 3 EVQVLVLDGRGHLLGRLAAIVAKQVLL-------------GRKVVVVRCEGINISGNFYRNKLNYLAFLRKRMNTNPSRG 69 (203)
T ss_dssp ----CEEECTTBBHHHHHHHHHHHHHH-------------TCCEEEECGGGCEEESCHHHHHHHSSSSSCHHHHCCCSSC
T ss_pred CccEEEEeCCCCchHHHHHHHHHHHhC-------------CCeEEEEchHHeecCchHHHHHHHHHHHHhhcccCCCCCC
Confidence 47899999999999999999999 666 6899999999999999999999999 998 7877
Q ss_pred CccccChhHHhhcChhHHHHHHHhccCCC-CCchhhhhcCceecCCCCCCCCCCCCcceecCccchhhccccchhhHHHH
Q 028816 98 HLKERTLKEQMERDPTEAIRKAVLRMLPR-NKLRDDRDRKLRIFPGSEHPFGDRPLEPYVMPPRRVRELRPRVRRAMIRE 176 (203)
Q Consensus 98 glk~~~~~~~~~r~P~~Ii~rAVrGMLPk-n~lr~~~l~rLkvy~G~~hp~~~qk~~~~~~pp~~~r~~r~~~~r~~~~~ 176 (203)
+ +++++|++||++||+||||+ |.+|+.+|+||+||+|+||||++|+| .++ |.+++++|+++.|.||.+
T Consensus 70 ~--------~~~r~P~~I~~~AVrGMLPkk~~lGr~~l~rLkVy~G~~hp~~aqkp--~vv-p~a~~v~~~~~~~ky~~l 138 (203)
T 2zkr_j 70 P--------YDFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKR--MVV-PAALKVVRLKPTRKFAYL 138 (203)
T ss_dssp C--------CCCCSHHHHHHHHHHHHSCTTSHHHHHHHHTEEECSCSSCSSSSCCB--CCG-GGBCCSSSSSCCSCEEEH
T ss_pred c--------cccCChHHHHHHHHHhhCCCCChhHHHHHhCcEEeCCCCCchhhcCC--ccc-chhhhhhhcCCCCceEEH
Confidence 7 57899999999999999999 67888999999999999999999987 444 689999999999998865
Q ss_pred HH
Q 028816 177 QK 178 (203)
Q Consensus 177 ~~ 178 (203)
-.
T Consensus 139 g~ 140 (203)
T 2zkr_j 139 GR 140 (203)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 13
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=100.00 E-value=1.2e-43 Score=296.57 Aligned_cols=132 Identities=27% Similarity=0.427 Sum_probs=118.5
Q ss_pred EEEeCCCCcchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEEeCcccccccccccceeEeeecccCCCcc--ccChhHHh
Q 028816 31 RVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLK--ERTLKEQM 108 (203)
Q Consensus 31 ~vIDA~gqvLGRLAS~VAk~L~GKhKp~ytP~~d~Gd~VVVVNaekI~iTG~K~~~K~Y~~htgYpGglk--~~~~~~~~ 108 (203)
+||||+||+||||||.||++|+ |||+|||||||+|+|||+||++|.||+| |++... ..+.++++
T Consensus 1 ~VIDA~g~~LGRLAs~VAk~L~------------~GD~VVVINaeki~iTG~K~~~K~yy~h--~l~~~~~~~~~~~~~~ 66 (178)
T 3jyw_M 1 VVIDGKGHLVGRLASVVAKQLL------------NGQKIVVVRAEELNISGEFFRNKLKYHD--FLRKATAFNKTRGPFH 66 (178)
T ss_dssp CCCCCCSSCSHHHHHHHHHHHT------------TTCCCCEECSTTSCCCCCSSHHHHSCSS--SSSSTTSCCCSSSCCC
T ss_pred CEEcCCCCchHHHHHHHHHHHh------------CCCEEEEEeCeeeEEcCchHhhEhheec--cCcccccCCccccccc
Confidence 5899999999999999999999 9999999999999999999999999998 554332 33468999
Q ss_pred hcChhHHHHHHHhccCCC-CCchhhhhcCceecCCCCCCCCCCCCcceecCccchhhccccchhhHHHHHHH
Q 028816 109 ERDPTEAIRKAVLRMLPR-NKLRDDRDRKLRIFPGSEHPFGDRPLEPYVMPPRRVRELRPRVRRAMIREQKK 179 (203)
Q Consensus 109 ~r~P~~Ii~rAVrGMLPk-n~lr~~~l~rLkvy~G~~hp~~~qk~~~~~~pp~~~r~~r~~~~r~~~~~~~~ 179 (203)
+++|++||+++|+||||+ |.+|+.+|+||+||+|.||||++|++ ++ .|.+++++|+++.|++|.+..-
T Consensus 67 ~r~P~~Il~~AVrGMLP~K~~lGr~~l~rLkVy~G~~hp~~aqk~--~v-vp~Alrv~RLkp~rKy~tLGel 135 (178)
T 3jyw_M 67 FRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKR--VV-VPQALRVLRLKPGRKYTTLGKL 135 (178)
T ss_dssp CSSTTTHHHHHTTSSSCSSSHHHHHHHHHCCEESSCCCCSCCSCS--SS-CCSSCCCCCSSSCSCCCCHHHH
T ss_pred cCCHHHHHHHHHHHHhhcccHhHHHHHhCCeeeCCCCCchhhccc--cc-CchHhhhhccCCCCceEEcchh
Confidence 999999999999999995 77888999999999999999999986 34 4789999999999999987654
No 14
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=48.76 E-value=43 Score=28.14 Aligned_cols=44 Identities=18% Similarity=0.154 Sum_probs=34.1
Q ss_pred HhhhchHHHhhhhhhc--ccCCceEEEEeCCCCcchhhHHHHHHHHh
Q 028816 8 AFSGNMKKALAGLRRI--NLEGLRWRVFDAKGQVLGRLASQVATVVQ 52 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~--~~~~r~W~vIDA~gqvLGRLAS~VAk~L~ 52 (203)
.+.-+.--|..+|.+. ......+++|-+.| .+|.+|.++|+.+-
T Consensus 150 ~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG-~vG~~a~qla~~~g 195 (345)
T 3jv7_A 150 PLTDAGLTPYHAISRVLPLLGPGSTAVVIGVG-GLGHVGIQILRAVS 195 (345)
T ss_dssp GGGTTTHHHHHHHHTTGGGCCTTCEEEEECCS-HHHHHHHHHHHHHC
T ss_pred hhhhhHHHHHHHHHHhccCCCCCCEEEEECCC-HHHHHHHHHHHHcC
Confidence 3555566677888875 67777899998875 78999999999764
No 15
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=39.99 E-value=16 Score=27.30 Aligned_cols=30 Identities=10% Similarity=0.040 Sum_probs=24.0
Q ss_pred ceEEEEeCCCCcchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEEe
Q 028816 28 LRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLN 73 (203)
Q Consensus 28 r~W~vIDA~gqvLGRLAS~VAk~L~GKhKp~ytP~~d~Gd~VVVVN 73 (203)
-.|+=+-+ .|++|..++++|. .||.|+|--
T Consensus 52 t~fi~vv~----wgk~AE~~~~yl~------------KG~~V~VeG 81 (108)
T 3koj_A 52 PARLKVVG----WGAVAQELQDRCR------------LNDEVVLEG 81 (108)
T ss_dssp CEEEEEEE----ETHHHHHHHHHCC------------TTCEEEEEE
T ss_pred cEEEEEEE----EhHHHHHHHHhCC------------CCCEEEEEE
Confidence 45776655 5789999999999 999998753
No 16
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=37.04 E-value=65 Score=27.60 Aligned_cols=41 Identities=22% Similarity=0.273 Sum_probs=34.6
Q ss_pred hhhchHHHhhhhhhcccCCceEEEEeCCCCcchhhHHHHHHH
Q 028816 9 FSGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQVATV 50 (203)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~r~W~vIDA~gqvLGRLAS~VAk~ 50 (203)
+...+.-|+.++.........|++|-+.| .+|.+|.++|+.
T Consensus 164 l~~~~~ta~~~l~~~~~~~g~~VlV~GaG-~vG~~aiqlak~ 204 (370)
T 4ej6_A 164 FCEPLACCLHGVDLSGIKAGSTVAILGGG-VIGLLTVQLARL 204 (370)
T ss_dssp GHHHHHHHHHHHHHHTCCTTCEEEEECCS-HHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhcCCCCCCEEEEECCC-HHHHHHHHHHHH
Confidence 55667778888888888888999999876 899999999994
No 17
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}
Probab=36.52 E-value=76 Score=26.61 Aligned_cols=36 Identities=11% Similarity=0.207 Sum_probs=26.3
Q ss_pred HHhhhhhhc-----ccCCceEEEEeCCCCcchhhHHHHHHHHh
Q 028816 15 KALAGLRRI-----NLEGLRWRVFDAKGQVLGRLASQVATVVQ 52 (203)
Q Consensus 15 ~~~~~~~~~-----~~~~r~W~vIDA~gqvLGRLAS~VAk~L~ 52 (203)
-|..+|.+. +. ...+++|-+-| .+|.+|.++|+.+.
T Consensus 154 ta~~al~~~~~~~~~~-~g~~VlV~GaG-~vG~~aiqlak~~~ 194 (344)
T 2h6e_A 154 TSMGAIRQALPFISKF-AEPVVIVNGIG-GLAVYTIQILKALM 194 (344)
T ss_dssp HHHHHHHHHHHHHTTC-SSCEEEEECCS-HHHHHHHHHHHHHC
T ss_pred HHHHHHHhhhhcccCC-CCCEEEEECCC-HHHHHHHHHHHHhc
Confidence 345566655 55 55777777666 99999999999764
No 18
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=35.63 E-value=91 Score=26.18 Aligned_cols=39 Identities=15% Similarity=0.032 Sum_probs=30.9
Q ss_pred chHHHhhhhhhcccCCceEEEEeCCCCcchhhHHHHHHHH
Q 028816 12 NMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQVATVV 51 (203)
Q Consensus 12 ~~~~~~~~~~~~~~~~r~W~vIDA~gqvLGRLAS~VAk~L 51 (203)
..--|..+|.+.......|++|-+.| .+|.+|.++|+.+
T Consensus 161 ~~~ta~~~l~~~~~~~g~~VlV~GaG-~vG~~a~qla~~~ 199 (348)
T 3two_A 161 AGITTYSPLKFSKVTKGTKVGVAGFG-GLGSMAVKYAVAM 199 (348)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEEESCS-HHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhcCCCCCCEEEEECCc-HHHHHHHHHHHHC
Confidence 34446777888888888999998875 8999999999853
No 19
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=34.10 E-value=77 Score=26.17 Aligned_cols=44 Identities=16% Similarity=0.135 Sum_probs=36.4
Q ss_pred hHhhhchHHHhhhhhhcccCCceEEEEeCCCCcchhhHHHHHHHH
Q 028816 7 TAFSGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQVATVV 51 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~r~W~vIDA~gqvLGRLAS~VAk~L 51 (203)
.++..+..-|..+|.+......+|++|-+- =.+|.+|.++|+.+
T Consensus 122 a~l~~~~~ta~~al~~~~~~~g~~VlV~Ga-G~vG~~a~qlak~~ 165 (315)
T 3goh_A 122 AALPCPLLTAWQAFEKIPLTKQREVLIVGF-GAVNNLLTQMLNNA 165 (315)
T ss_dssp HTSHHHHHHHHHHHTTSCCCSCCEEEEECC-SHHHHHHHHHHHHH
T ss_pred hhCccHHHHHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHc
Confidence 346667777888888888888899999987 78999999999864
No 20
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=33.59 E-value=1.2e+02 Score=25.20 Aligned_cols=42 Identities=24% Similarity=0.298 Sum_probs=32.0
Q ss_pred hhhchHHHhhhhhhcccCCceEEEEeCCCCcchhhHHHHHHHH
Q 028816 9 FSGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQVATVV 51 (203)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~r~W~vIDA~gqvLGRLAS~VAk~L 51 (203)
+.-..--|..+|........++++|-+.| .+|.+|.++|+.+
T Consensus 148 l~~~~~ta~~~l~~~~~~~g~~VlV~GaG-~vG~~a~qla~~~ 189 (340)
T 3s2e_A 148 ILCAGVTVYKGLKVTDTRPGQWVVISGIG-GLGHVAVQYARAM 189 (340)
T ss_dssp GGTHHHHHHHHHHTTTCCTTSEEEEECCS-TTHHHHHHHHHHT
T ss_pred ccchhHHHHHHHHHcCCCCCCEEEEECCC-HHHHHHHHHHHHC
Confidence 33444556777877788888899998876 5899999999953
No 21
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=31.26 E-value=1.1e+02 Score=25.96 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=29.4
Q ss_pred HHHhhhhhh--cccCCceEEEEeCCCCcchhhHHHHHHHHhC
Q 028816 14 KKALAGLRR--INLEGLRWRVFDAKGQVLGRLASQVATVVQG 53 (203)
Q Consensus 14 ~~~~~~~~~--~~~~~r~W~vIDA~gqvLGRLAS~VAk~L~G 53 (203)
--|..++.+ .+.....|++|-+-| .+|.+|.++|+.+.|
T Consensus 171 ~ta~~al~~~~~~~~~g~~VlV~GaG-~vG~~avqlak~~~G 211 (359)
T 1h2b_A 171 ITAYRAVKKAARTLYPGAYVAIVGVG-GLGHIAVQLLKVMTP 211 (359)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEEECCS-HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhhccCCCCCCEEEEECCC-HHHHHHHHHHHHcCC
Confidence 345666766 566677888888767 899999999996633
No 22
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1
Probab=30.67 E-value=1e+02 Score=25.92 Aligned_cols=40 Identities=13% Similarity=0.078 Sum_probs=31.2
Q ss_pred hhchHHHhhhhhhcccCCceEEEEeCCCCcchhhHHHHHHH
Q 028816 10 SGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQVATV 50 (203)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~r~W~vIDA~gqvLGRLAS~VAk~ 50 (203)
...+.-|..++...+....++++|-+.| .+|.+|.++|+.
T Consensus 151 ~~~~~ta~~al~~~~~~~g~~VlV~GaG-~vG~~a~qla~~ 190 (352)
T 1e3j_A 151 LEPLSVGVHACRRAGVQLGTTVLVIGAG-PIGLVSVLAAKA 190 (352)
T ss_dssp HHHHHHHHHHHHHHTCCTTCEEEEECCS-HHHHHHHHHHHH
T ss_pred hchHHHHHHHHHhcCCCCCCEEEEECCC-HHHHHHHHHHHH
Confidence 3445557777777777778899999865 799999999984
No 23
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A
Probab=28.63 E-value=1.4e+02 Score=24.88 Aligned_cols=38 Identities=21% Similarity=0.241 Sum_probs=28.1
Q ss_pred chHHHhhhhhhcccCCceEEEEeCCCCcchhhHHHHHHH
Q 028816 12 NMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQVATV 50 (203)
Q Consensus 12 ~~~~~~~~~~~~~~~~r~W~vIDA~gqvLGRLAS~VAk~ 50 (203)
+.--|..+|.+......++++|-+-|- +|.++.++|+.
T Consensus 149 ~~~ta~~~l~~~~~~~g~~VlV~GaG~-vG~~~~~~a~~ 186 (339)
T 1rjw_A 149 AGVTTYKALKVTGAKPGEWVAIYGIGG-LGHVAVQYAKA 186 (339)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEECCST-THHHHHHHHHH
T ss_pred hHHHHHHHHHhcCCCCCCEEEEECCCH-HHHHHHHHHHH
Confidence 334466677776777777888886665 99999999984
No 24
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=27.80 E-value=1.3e+02 Score=25.43 Aligned_cols=40 Identities=15% Similarity=0.073 Sum_probs=31.5
Q ss_pred hhchHHHhhhhhhcccCCceEEEEeCCCCcchhhHHHHHHH
Q 028816 10 SGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQVATV 50 (203)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~r~W~vIDA~gqvLGRLAS~VAk~ 50 (203)
...+.-|..++.+.+.....|++|-+.| .+|.+|.++|+.
T Consensus 154 ~~~~~ta~~al~~~~~~~g~~VlV~GaG-~vG~~aiqlak~ 193 (356)
T 1pl8_A 154 IEPLSVGIHACRRGGVTLGHKVLVCGAG-PIGMVTLLVAKA 193 (356)
T ss_dssp HHHHHHHHHHHHHHTCCTTCEEEEECCS-HHHHHHHHHHHH
T ss_pred hchHHHHHHHHHhcCCCCCCEEEEECCC-HHHHHHHHHHHH
Confidence 3445557777777778888899999865 799999999985
No 25
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=27.61 E-value=34 Score=26.06 Aligned_cols=29 Identities=21% Similarity=0.187 Sum_probs=22.8
Q ss_pred eEEEEeCCCCcchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEEe
Q 028816 29 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLN 73 (203)
Q Consensus 29 ~W~vIDA~gqvLGRLAS~VAk~L~GKhKp~ytP~~d~Gd~VVVVN 73 (203)
.|+=|-| .|++|..++++|. .||.|+|.-
T Consensus 63 ~w~~v~~----wg~~Ae~~~~~l~------------KG~~V~VeG 91 (128)
T 4dam_A 63 NFFTVWA----NRQLATNASGSLA------------VGDPVVVQG 91 (128)
T ss_dssp EEEEEEE----EHHHHHHHHHHCC------------TTCEEEEEE
T ss_pred EEEEEEE----EcHHHHHHHHhcC------------CCCEEEEEE
Confidence 3555544 5789999999999 999998754
No 26
>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*
Probab=27.28 E-value=97 Score=25.73 Aligned_cols=44 Identities=18% Similarity=0.108 Sum_probs=35.0
Q ss_pred hHhhhchHHHhhhh-hhcccCCceEEEEeCCCCcchhhHHHHHHH
Q 028816 7 TAFSGNMKKALAGL-RRINLEGLRWRVFDAKGQVLGRLASQVATV 50 (203)
Q Consensus 7 ~~~~~~~~~~~~~~-~~~~~~~r~W~vIDA~gqvLGRLAS~VAk~ 50 (203)
.++.-+..-|+.+| ...+....++++|-+-.--+|.++.++|+.
T Consensus 128 a~l~~~~~tA~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~ 172 (336)
T 4b7c_A 128 SALGMTGMTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARL 172 (336)
T ss_dssp TTTSHHHHHHHHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHH
T ss_pred hhcccHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 45555667778888 667788889999998777899999999984
No 27
>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*
Probab=27.12 E-value=1.5e+02 Score=24.74 Aligned_cols=38 Identities=24% Similarity=0.321 Sum_probs=30.7
Q ss_pred HHHhhhhhhcccCCceEEEEeCCCCcchhhHHHHHHHH
Q 028816 14 KKALAGLRRINLEGLRWRVFDAKGQVLGRLASQVATVV 51 (203)
Q Consensus 14 ~~~~~~~~~~~~~~r~W~vIDA~gqvLGRLAS~VAk~L 51 (203)
--|..+|.+......++++|-+-+--+|.++.++|+.+
T Consensus 157 ~ta~~~l~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~ 194 (347)
T 1jvb_A 157 ITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAV 194 (347)
T ss_dssp HHHHHHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHHHc
Confidence 34566676667777789999988889999999999865
No 28
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=27.08 E-value=35 Score=25.01 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=19.4
Q ss_pred cchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEEe
Q 028816 39 VLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLN 73 (203)
Q Consensus 39 vLGRLAS~VAk~L~GKhKp~ytP~~d~Gd~VVVVN 73 (203)
..|++|..++++|. .||.|+|.-
T Consensus 56 ~wg~~Ae~~~~~l~------------KG~~V~V~G 78 (116)
T 3vdy_A 56 LWRKTAENTALYCQ------------KGSLVGVSG 78 (116)
T ss_dssp EEHHHHHHHHHHCC------------TTCEEEEEE
T ss_pred EECHHHHHHHHhCC------------CCCEEEEEE
Confidence 35889999999998 899988753
No 29
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=26.93 E-value=57 Score=26.06 Aligned_cols=32 Identities=16% Similarity=0.269 Sum_probs=27.8
Q ss_pred CceEEEEeCCCCcchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEEe
Q 028816 27 GLRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLN 73 (203)
Q Consensus 27 ~r~W~vIDA~gqvLGRLAS~VAk~L~GKhKp~ytP~~d~Gd~VVVVN 73 (203)
...|+-|=+-| |.||..|.++|. .|+.|+|.-
T Consensus 84 ~tdf~~V~vfG---g~lAE~i~~ylk------------kG~rVlVeG 115 (148)
T 3stb_C 84 DKDFHTVRVFD---SDYSSRVKEQLR------------DGEWFLVTG 115 (148)
T ss_dssp SEEEEEEEECS---HHHHHHHHHHCC------------TTCEEEEEE
T ss_pred ccceEEEEEEC---ChHHHHHHHHhc------------CCCEEEEEE
Confidence 45699998888 999999999999 999998754
No 30
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Probab=24.22 E-value=70 Score=26.99 Aligned_cols=40 Identities=23% Similarity=0.215 Sum_probs=33.0
Q ss_pred hchHHHhhhhhhcccCCceEEEEeCCCCcchhhHHHHHHHH
Q 028816 11 GNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQVATVV 51 (203)
Q Consensus 11 ~~~~~~~~~~~~~~~~~r~W~vIDA~gqvLGRLAS~VAk~L 51 (203)
..+.-|..+|.+.......|++|-+.| .+|.+|.++|+.+
T Consensus 163 ~~~~ta~~~l~~~~~~~g~~VlV~GaG-~vG~~aiqlak~~ 202 (363)
T 3m6i_A 163 EPLSVALAGLQRAGVRLGDPVLICGAG-PIGLITMLCAKAA 202 (363)
T ss_dssp HHHHHHHHHHHHHTCCTTCCEEEECCS-HHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHcCCCCCCEEEEECCC-HHHHHHHHHHHHc
Confidence 456678888888888888999999875 7899999999853
No 31
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=24.03 E-value=1.7e+02 Score=22.21 Aligned_cols=24 Identities=13% Similarity=0.228 Sum_probs=19.8
Q ss_pred chHHHhhhhhhcccCCceEEEEeC
Q 028816 12 NMKKALAGLRRINLEGLRWRVFDA 35 (203)
Q Consensus 12 ~~~~~~~~~~~~~~~~r~W~vIDA 35 (203)
.+..|+.+|..+....-..+|||.
T Consensus 19 ~l~~~l~Sl~~q~~~~~eiIvvDd 42 (240)
T 3bcv_A 19 YLDQCVQALLAQTLSDIEIILIDD 42 (240)
T ss_dssp THHHHHHHHHTCSSSSEEEEEEEC
T ss_pred HHHHHHHHHHhCcCCCeEEEEEEC
Confidence 578999999988887778888883
No 32
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=24.02 E-value=41 Score=25.04 Aligned_cols=29 Identities=10% Similarity=0.284 Sum_probs=22.1
Q ss_pred eEEEEeCCCCcch-hhHHHHHHHHhCCCCCCCCCCCCCCCEEEEEe
Q 028816 29 RWRVFDAKGQVLG-RLASQVATVVQGKDKPTYAPNRDDGDMCIVLN 73 (203)
Q Consensus 29 ~W~vIDA~gqvLG-RLAS~VAk~L~GKhKp~ytP~~d~Gd~VVVVN 73 (203)
.|+=|-| .| ++|..++++|. .||.|+|.-
T Consensus 54 ~~~~v~~----wg~~~Ae~~~~~l~------------KG~~V~V~G 83 (124)
T 3ulp_A 54 DWHRIVV----YDQNIVDLIDKYLR------------KGRRVYVQG 83 (124)
T ss_dssp EEEEEEE----CCHHHHHHHHHHCC------------TTCEEEEEE
T ss_pred EEEEEEE----EEchHHHHHHhhcC------------CCCEEEEEE
Confidence 3554444 56 89999999999 999998753
No 33
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=23.80 E-value=1.8e+02 Score=24.76 Aligned_cols=39 Identities=15% Similarity=0.063 Sum_probs=29.6
Q ss_pred chHHHhhhhhhcccCCceEEEEeCCCCcchhhHHHHHHHH
Q 028816 12 NMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQVATVV 51 (203)
Q Consensus 12 ~~~~~~~~~~~~~~~~r~W~vIDA~gqvLGRLAS~VAk~L 51 (203)
+.--|..+|.+.+.....+++|-+.| .+|.+|.++|+.+
T Consensus 179 ~~~tA~~al~~~~~~~g~~VlV~GaG-~vG~~aiqlak~~ 217 (369)
T 1uuf_A 179 AGITTYSPLRHWQAGPGKKVGVVGIG-GLGHMGIKLAHAM 217 (369)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEEECCS-HHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhcCCCCCCEEEEECCC-HHHHHHHHHHHHC
Confidence 44455667777677777888888876 6999999999853
No 34
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=23.77 E-value=47 Score=25.25 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=19.0
Q ss_pred cchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEEe
Q 028816 39 VLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLN 73 (203)
Q Consensus 39 vLGRLAS~VAk~L~GKhKp~ytP~~d~Gd~VVVVN 73 (203)
+.|++|..++++|. .||.|+|.-
T Consensus 55 ~wg~~Ae~~~~~l~------------KG~~V~V~G 77 (134)
T 2vw9_A 55 LFGRTAEIANQYLS------------KGSSVLIEG 77 (134)
T ss_dssp EEHHHHHHHHHHCC------------TTCEEEEEE
T ss_pred EEcHHHHHHHHhCC------------CCCEEEEEE
Confidence 35799999999998 898887753
No 35
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=22.67 E-value=49 Score=25.91 Aligned_cols=29 Identities=24% Similarity=0.348 Sum_probs=22.7
Q ss_pred eEEEEeCCCCcchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEEe
Q 028816 29 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLN 73 (203)
Q Consensus 29 ~W~vIDA~gqvLGRLAS~VAk~L~GKhKp~ytP~~d~Gd~VVVVN 73 (203)
.|+=|-| .|++|..++++|. .|+.|+|.-
T Consensus 63 ~~~~v~~----wg~~Ae~~~~~l~------------KG~~V~VeG 91 (153)
T 1z9f_A 63 DFFRIVT----FGRLAEFARTYLT------------KGRLVLVEG 91 (153)
T ss_dssp EEEEEEE----EHHHHHHHHHHCC------------TTCEEEEEE
T ss_pred EEEEEEE----ECHHHHHHHhhCC------------CCCEEEEEE
Confidence 3555544 5789999999999 999998853
No 36
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=22.31 E-value=46 Score=26.75 Aligned_cols=27 Identities=19% Similarity=0.430 Sum_probs=21.1
Q ss_pred EEEEeCCCCcchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEE
Q 028816 30 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVL 72 (203)
Q Consensus 30 W~vIDA~gqvLGRLAS~VAk~L~GKhKp~ytP~~d~Gd~VVVV 72 (203)
|+=|-+ .|+||..++++|. .||.|+|.
T Consensus 55 ~i~vv~----wg~~Ae~~~~~l~------------KG~~V~Ve 81 (178)
T 1eqq_A 55 WHRVVL----FGKLAEVASEYLR------------KGSQVYIE 81 (178)
T ss_dssp EEEEEE----CHHHHHHHHHHCC------------TTCEEEEC
T ss_pred EEEEEE----ccHHHHHHHHhcC------------CCCEEEEE
Confidence 554444 5789999999999 89988774
No 37
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=22.15 E-value=52 Score=25.32 Aligned_cols=28 Identities=18% Similarity=0.419 Sum_probs=21.8
Q ss_pred eEEEEeCCCCcchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEE
Q 028816 29 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVL 72 (203)
Q Consensus 29 ~W~vIDA~gqvLGRLAS~VAk~L~GKhKp~ytP~~d~Gd~VVVV 72 (203)
.|+=|-+ .|++|..++++|. .||.|+|.
T Consensus 53 ~~~~v~~----wg~~Ae~~~~~l~------------KG~~V~V~ 80 (145)
T 1qvc_A 53 EWHRVVL----FGKLAEVASEYLR------------KGSQVYIE 80 (145)
T ss_dssp EEEEEEE----ETHHHHHHHHHCC------------TTCEEEEE
T ss_pred EEEEEEE----ehHHHHHHHHhcC------------CCCEEEEE
Confidence 4655554 5679999999998 89988875
No 38
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1
Probab=22.05 E-value=1.4e+02 Score=25.44 Aligned_cols=43 Identities=12% Similarity=-0.018 Sum_probs=33.3
Q ss_pred hHhhhchHHHhhhhhhcc-cCCceEEEEeCCCCcchhhHHHHHHH
Q 028816 7 TAFSGNMKKALAGLRRIN-LEGLRWRVFDAKGQVLGRLASQVATV 50 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~-~~~r~W~vIDA~gqvLGRLAS~VAk~ 50 (203)
.++...+.-|+.++.+.+ .....|++|-+ .-.+|.+|.++|+.
T Consensus 174 Aa~~~~~~ta~~al~~~~~~~~g~~VlV~G-aG~vG~~aiqlak~ 217 (380)
T 1vj0_A 174 AMAMCSGATAYHAFDEYPESFAGKTVVIQG-AGPLGLFGVVIARS 217 (380)
T ss_dssp HHHTTHHHHHHHHHHTCSSCCBTCEEEEEC-CSHHHHHHHHHHHH
T ss_pred HhhhcHHHHHHHHHHhcCCCCCCCEEEEEC-cCHHHHHHHHHHHH
Confidence 344446667778887777 67778999999 55899999999985
No 39
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=21.90 E-value=52 Score=26.11 Aligned_cols=29 Identities=21% Similarity=0.185 Sum_probs=22.4
Q ss_pred eEEEEeCCCCcchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEEe
Q 028816 29 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLN 73 (203)
Q Consensus 29 ~W~vIDA~gqvLGRLAS~VAk~L~GKhKp~ytP~~d~Gd~VVVVN 73 (203)
.||=|-+ .|++|..++++|. .||.|+|.=
T Consensus 53 ~~~~v~~----wg~~Ae~~~~~l~------------KG~~V~VeG 81 (168)
T 3afp_A 53 LFLRCNI----WREAAENVAESLT------------RGARVIVTG 81 (168)
T ss_dssp EEEEEEE----EHHHHHHHHHHCC------------TTCEEEEEE
T ss_pred EEEEEEE----ehHHHHHHHHhCC------------CCCEEEEEE
Confidence 3555544 4789999999999 899988763
No 40
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=21.35 E-value=31 Score=25.04 Aligned_cols=28 Identities=14% Similarity=0.106 Sum_probs=21.4
Q ss_pred EEEeCCCCcchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEE
Q 028816 31 RVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVL 72 (203)
Q Consensus 31 ~vIDA~gqvLGRLAS~VAk~L~GKhKp~ytP~~d~Gd~VVVV 72 (203)
.-|++. ..|++|..++.+|. .|+.|.|.
T Consensus 48 ~~~~vv--~~g~~Ae~~~~~l~------------KG~~V~V~ 75 (104)
T 1txy_A 48 CQMPVI--VSGHENQAITHSIT------------VGSRITVQ 75 (104)
T ss_dssp EEEEEE--EESSTTHHHHTTCC------------TTCEEEEE
T ss_pred EEEEEE--EEhHHHHHHHhhCC------------CCCEEEEE
Confidence 345543 56899999999998 89888764
No 41
>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}
Probab=21.33 E-value=1.8e+02 Score=24.30 Aligned_cols=44 Identities=20% Similarity=0.106 Sum_probs=34.7
Q ss_pred hHhhhchHHHhhhh-hhcccCCceEEEEeCCCCcchhhHHHHHHH
Q 028816 7 TAFSGNMKKALAGL-RRINLEGLRWRVFDAKGQVLGRLASQVATV 50 (203)
Q Consensus 7 ~~~~~~~~~~~~~~-~~~~~~~r~W~vIDA~gqvLGRLAS~VAk~ 50 (203)
.++..+.--|..+| ........++++|-+-.-.+|.++.++|+.
T Consensus 138 a~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~ 182 (342)
T 4eye_A 138 VALIANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKG 182 (342)
T ss_dssp HHHTTHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 34556667777788 666777788999998767899999999984
No 42
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}
Probab=21.01 E-value=1.9e+02 Score=24.92 Aligned_cols=44 Identities=14% Similarity=-0.009 Sum_probs=31.8
Q ss_pred hhHhhhchHHHhhhhhh--cccCCceEEEEeCCCCcchhhHHHHHHH
Q 028816 6 ATAFSGNMKKALAGLRR--INLEGLRWRVFDAKGQVLGRLASQVATV 50 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~--~~~~~r~W~vIDA~gqvLGRLAS~VAk~ 50 (203)
+.++...+.-|..++.. .......|++|-+.| .+|.+|.++|+.
T Consensus 190 aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG-~vG~~aiqlak~ 235 (404)
T 3ip1_A 190 AGSLVEPTSVAYNAVIVRGGGIRPGDNVVILGGG-PIGLAAVAILKH 235 (404)
T ss_dssp HHHTHHHHHHHHHHHTTTSCCCCTTCEEEEECCS-HHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHhccCCCCCCEEEEECCC-HHHHHHHHHHHH
Confidence 34455556667777743 256777899998876 899999999984
No 43
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=20.86 E-value=56 Score=25.62 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=19.4
Q ss_pred cchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEEe
Q 028816 39 VLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLN 73 (203)
Q Consensus 39 vLGRLAS~VAk~L~GKhKp~ytP~~d~Gd~VVVVN 73 (203)
+.|+||..++++|. .|+.|+|.-
T Consensus 62 ~wg~~Ae~~~~~l~------------KG~~V~VeG 84 (158)
T 3tqy_A 62 FFNRLAEIVGEYLR------------KGSKIYIEG 84 (158)
T ss_dssp EETHHHHHHHHHCC------------TTCEEEEEE
T ss_pred EEhHHHHHHHhhcC------------CCCEEEEEE
Confidence 36789999999999 899988753
No 44
>2khr_A Protein MBTH; siderophores, mycobactin, MTBH-like, 2-hydroxyphenyloxazolin tuberculosis, biosynthetic protein, structural genomics; NMR {Mycobacterium tuberculosis}
Probab=20.30 E-value=71 Score=22.75 Aligned_cols=17 Identities=29% Similarity=0.667 Sum_probs=13.3
Q ss_pred CCCC-CCCCEEEEEeCcc
Q 028816 60 APNR-DDGDMCIVLNAKD 76 (203)
Q Consensus 60 tP~~-d~Gd~VVVVNaek 76 (203)
.|.. +.|.+.||||.|.
T Consensus 7 npfdd~~~~f~VlvN~E~ 24 (74)
T 2khr_A 7 NPFDDDNGAFFVLVNDED 24 (74)
T ss_dssp CCCSCCCSCEEEEEETTC
T ss_pred CCCCCCCCeEEEEEcCCC
Confidence 5665 4588999999875
No 45
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}
Probab=20.16 E-value=2.4e+02 Score=23.55 Aligned_cols=39 Identities=26% Similarity=0.281 Sum_probs=30.2
Q ss_pred chHHHhhhhhhcccCCceEEEEeCCCCcchhhHHHHHHH
Q 028816 12 NMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQVATV 50 (203)
Q Consensus 12 ~~~~~~~~~~~~~~~~r~W~vIDA~gqvLGRLAS~VAk~ 50 (203)
..--|..++.+.+....++++|-+-+--+|+++.++|+.
T Consensus 154 ~~~ta~~~l~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~ 192 (347)
T 2hcy_A 154 AGITVYKALKSANLMAGHWVAISGAAGGLGSLAVQYAKA 192 (347)
T ss_dssp HHHHHHHHHHTTTCCTTCEEEEETTTSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHH
Confidence 344466777777777778999988777899999998874
Done!