BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028817
(203 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1L9X|A Chain A, Structure Of Gamma-Glutamyl Hydrolase
pdb|1L9X|B Chain B, Structure Of Gamma-Glutamyl Hydrolase
pdb|1L9X|C Chain C, Structure Of Gamma-Glutamyl Hydrolase
pdb|1L9X|D Chain D, Structure Of Gamma-Glutamyl Hydrolase
Length = 315
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 9/72 (12%)
Query: 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPE---EILFEK 139
+P+IGIL ++ + YIAASYVK++ESAGARV+P+ + E EILF
Sbjct: 30 KPIIGILMQK---CRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILF-- 84
Query: 140 LKLVNGVLLTGG 151
K +NG+L GG
Sbjct: 85 -KSINGILFPGG 95
>pdb|1O5I|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Reductase (Tm1169) From Thermotoga Maritima At 2.50 A
Resolution
pdb|1O5I|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Reductase (Tm1169) From Thermotoga Maritima At 2.50 A
Resolution
pdb|1O5I|C Chain C, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Reductase (Tm1169) From Thermotoga Maritima At 2.50 A
Resolution
pdb|1O5I|D Chain D, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Reductase (Tm1169) From Thermotoga Maritima At 2.50 A
Resolution
Length = 249
Score = 30.0 bits (66), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 12/90 (13%)
Query: 82 NRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKLK 141
R V +LS G + I A + ++ +G R + + ++LFEK+K
Sbjct: 32 GRAVADVLSQEGAEVT-----------ICARNEELLKRSGHRYVVCDLRKDLDLLFEKVK 80
Query: 142 LVNGVLLTGGWAKKGLYFQIVEKIFKHEAI 171
V+ ++L G K G + ++ + FK EAI
Sbjct: 81 EVDILVLNAGGPKAGFFDELTNEDFK-EAI 109
>pdb|3FIJ|A Chain A, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|B Chain B, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|C Chain C, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|D Chain D, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|E Chain E, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|F Chain F, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|G Chain G, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|H Chain H, Crystal Structure Of A Uncharacterized Protein Lin1909
Length = 254
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 107 SYIAASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGG 151
+Y YV ++ G I L ++P + + + LV+G+LLTGG
Sbjct: 27 TYTQQRYVDAIQKVGGFPIALPIDDPSTAV-QAISLVDGLLLTGG 70
>pdb|2QK7|A Chain A, A Covalent S-f Heterodimer Of Staphylococcal
Gamma-hemolysin
Length = 288
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 90 SHPGDGASGRLNNSKNASYIAASYVKFVESAGARVI 125
S P G SG N SK SY +YV VES ++ +
Sbjct: 127 SAPSIGGSGSFNYSKTISYNQKNYVTEVESQNSKGV 162
>pdb|3B07|B Chain B, Crystal Structure Of Octameric Pore Form Of
Gamma-Hemolysin From Staphylococcus Aureus
pdb|3B07|D Chain D, Crystal Structure Of Octameric Pore Form Of
Gamma-Hemolysin From Staphylococcus Aureus
pdb|3B07|F Chain F, Crystal Structure Of Octameric Pore Form Of
Gamma-Hemolysin From Staphylococcus Aureus
pdb|3B07|H Chain H, Crystal Structure Of Octameric Pore Form Of
Gamma-Hemolysin From Staphylococcus Aureus
Length = 290
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 90 SHPGDGASGRLNNSKNASYIAASYVKFVESAGARVI 125
S P G SG N SK SY +YV VES ++ +
Sbjct: 129 SAPSIGGSGSFNYSKTISYNQKNYVTEVESQNSKGV 164
>pdb|1DQJ|B Chain B, Crystal Structure Of The Anti-Lysozyme Antibody Hyhel-63
Complexed With Hen Egg White Lysozyme
pdb|1DQM|H Chain H, Crystal Structure Of Anti-Lysozyme Antibody
pdb|1DQQ|B Chain B, Crystal Structure Of Anti-Lysozyme Antibody Hyhel-63
pdb|1DQQ|D Chain D, Crystal Structure Of Anti-Lysozyme Antibody Hyhel-63
pdb|1NBY|B Chain B, Crystal Structure Of Hyhel-63 Complexed With Hel Mutant
K96a
pdb|1NBZ|B Chain B, Crystal Structure Of Hyhel-63 Complexed With Hel Mutant
K97a
Length = 210
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 178 SLVHGITGDVVQKDYYTWPYHFSG 201
SL +TGD V DY++W F G
Sbjct: 19 SLTCSVTGDSVTSDYWSWIRKFPG 42
>pdb|3HFM|H Chain H, Structure Of An Antibody-Antigen Complex. Crystal
Structure Of The HyHEL-10 Fab-Lysozyme Complex
Length = 215
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 178 SLVHGITGDVVQKDYYTWPYHFSG 201
SL +TGD + DY++W F G
Sbjct: 19 SLTCSVTGDSITSDYWSWIRKFPG 42
>pdb|3D9A|H Chain H, High Resolution Crystal Structure Structure Of Hyhel10 Fab
Complexed To Hen Egg Lysozyme
Length = 210
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 178 SLVHGITGDVVQKDYYTWPYHFSG 201
SL +TGD + DY++W F G
Sbjct: 19 SLTCSVTGDSITSDYWSWIRKFPG 42
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,209,252
Number of Sequences: 62578
Number of extensions: 241421
Number of successful extensions: 601
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 584
Number of HSP's gapped (non-prelim): 20
length of query: 203
length of database: 14,973,337
effective HSP length: 94
effective length of query: 109
effective length of database: 9,091,005
effective search space: 990919545
effective search space used: 990919545
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)