Query 028817
Match_columns 203
No_of_seqs 132 out of 1073
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 03:00:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028817.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028817hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1559 Gamma-glutamyl hydrola 100.0 2.7E-32 5.9E-37 240.4 11.2 155 32-187 1-157 (340)
2 PF07722 Peptidase_C26: Peptid 99.9 1.1E-24 2.3E-29 185.5 7.0 110 84-194 1-133 (217)
3 COG2071 Predicted glutamine am 99.9 3.9E-22 8.5E-27 174.3 8.8 117 81-199 1-139 (243)
4 PRK11366 puuD gamma-glutamyl-g 99.8 1.3E-18 2.8E-23 151.6 11.5 110 80-195 4-135 (254)
5 cd01747 GATase1_Glutamyl_Hydro 99.7 7.9E-18 1.7E-22 148.5 9.8 98 86-186 1-101 (273)
6 cd01745 GATase1_2 Subgroup of 99.4 4E-12 8.8E-17 105.8 9.5 110 86-199 1-132 (189)
7 cd01744 GATase1_CPSase Small c 98.6 1E-07 2.2E-12 78.5 6.8 68 112-186 11-78 (178)
8 PRK12564 carbamoyl phosphate s 98.4 5.8E-07 1.3E-11 82.9 7.1 69 109-184 187-255 (360)
9 PRK07765 para-aminobenzoate sy 98.4 1.2E-06 2.6E-11 74.8 7.2 71 111-186 14-85 (214)
10 PRK13525 glutamine amidotransf 98.2 3.8E-06 8.2E-11 70.3 7.0 78 84-187 2-82 (189)
11 cd01742 GATase1_GMP_Synthase T 98.2 3.3E-06 7.1E-11 68.7 6.3 67 111-186 12-79 (181)
12 cd03130 GATase1_CobB Type 1 gl 98.1 4.3E-06 9.4E-11 70.3 5.9 76 106-187 9-85 (198)
13 TIGR01368 CPSaseIIsmall carbam 98.1 7.5E-06 1.6E-10 75.6 7.6 65 111-184 185-250 (358)
14 PRK01175 phosphoribosylformylg 98.1 1.3E-05 2.8E-10 71.0 8.1 92 82-187 2-99 (261)
15 cd01741 GATase1_1 Subgroup of 98.0 8.2E-06 1.8E-10 66.8 5.0 71 110-186 13-90 (188)
16 PF00117 GATase: Glutamine ami 98.0 1.3E-05 2.9E-10 65.4 5.8 71 110-186 10-81 (192)
17 cd01743 GATase1_Anthranilate_S 98.0 2E-05 4.3E-10 64.7 6.7 69 111-186 12-80 (184)
18 PRK00758 GMP synthase subunit 98.0 1.5E-05 3.3E-10 65.5 5.9 62 112-186 14-76 (184)
19 TIGR00888 guaA_Nterm GMP synth 98.0 1.7E-05 3.6E-10 65.5 6.0 67 112-186 13-79 (188)
20 PRK12838 carbamoyl phosphate s 97.9 2E-05 4.3E-10 72.8 6.8 70 109-186 177-246 (354)
21 cd01749 GATase1_PB Glutamine A 97.8 1.1E-05 2.5E-10 66.8 2.7 66 113-186 13-78 (183)
22 PLN02832 glutamine amidotransf 97.8 6.3E-05 1.4E-09 66.6 7.5 77 85-187 3-82 (248)
23 PRK13143 hisH imidazole glycer 97.8 3.3E-05 7.3E-10 64.8 5.2 67 111-186 14-80 (200)
24 TIGR01737 FGAM_synth_I phospho 97.8 7.9E-05 1.7E-09 64.0 7.3 70 111-187 15-88 (227)
25 PF01174 SNO: SNO glutamine am 97.8 1.3E-05 2.8E-10 68.6 2.3 71 110-187 8-78 (188)
26 PRK13146 hisH imidazole glycer 97.8 2.1E-05 4.7E-10 66.7 3.5 71 111-186 15-86 (209)
27 PRK13170 hisH imidazole glycer 97.7 2.3E-05 5E-10 65.8 3.5 65 111-186 14-79 (196)
28 cd01746 GATase1_CTP_Synthase T 97.7 8.6E-05 1.9E-09 64.7 6.8 71 111-187 21-94 (235)
29 PRK13152 hisH imidazole glycer 97.7 6E-05 1.3E-09 63.2 5.6 68 111-186 13-82 (201)
30 PRK06895 putative anthranilate 97.7 0.00012 2.6E-09 60.9 7.1 70 107-186 12-81 (190)
31 CHL00188 hisH imidazole glycer 97.7 7E-05 1.5E-09 64.1 5.4 69 111-187 15-84 (210)
32 CHL00197 carA carbamoyl-phosph 97.7 0.0001 2.2E-09 68.9 6.9 67 111-184 204-270 (382)
33 cd01740 GATase1_FGAR_AT Type 1 97.7 8.6E-05 1.9E-09 64.2 5.9 75 111-187 13-92 (238)
34 cd01750 GATase1_CobQ Type 1 gl 97.6 7.2E-05 1.6E-09 62.7 4.5 68 112-187 14-82 (194)
35 PRK05670 anthranilate synthase 97.6 0.00017 3.8E-09 59.7 6.7 66 111-185 13-80 (189)
36 PRK01077 cobyrinic acid a,c-di 97.6 0.00011 2.3E-09 69.1 5.9 87 83-187 245-332 (451)
37 TIGR00379 cobB cobyrinic acid 97.5 0.0001 2.2E-09 69.4 5.0 84 83-187 244-331 (449)
38 PRK13526 glutamine amidotransf 97.5 0.00016 3.4E-09 61.4 5.6 80 84-187 3-82 (179)
39 PRK13142 hisH imidazole glycer 97.5 0.0001 2.2E-09 62.9 4.3 66 111-186 13-79 (192)
40 PRK13181 hisH imidazole glycer 97.5 0.00014 3.1E-09 60.7 4.5 68 111-186 13-81 (199)
41 TIGR00337 PyrG CTP synthase. C 97.5 0.00035 7.5E-09 67.8 7.6 89 81-186 287-381 (525)
42 TIGR03800 PLP_synth_Pdx2 pyrid 97.5 0.00018 3.9E-09 60.3 4.8 64 113-187 14-80 (184)
43 PLN02347 GMP synthetase 97.4 0.00033 7.1E-09 67.9 7.1 70 111-186 24-95 (536)
44 PRK00074 guaA GMP synthase; Re 97.4 0.00029 6.4E-09 67.6 6.7 66 111-186 17-84 (511)
45 TIGR00566 trpG_papA glutamine 97.4 0.00032 6.9E-09 58.5 5.9 65 111-184 13-79 (188)
46 cd01748 GATase1_IGP_Synthase T 97.3 0.00017 3.7E-09 60.0 3.4 67 113-187 14-81 (198)
47 PRK13527 glutamine amidotransf 97.2 0.00051 1.1E-08 57.5 4.9 71 111-187 17-87 (200)
48 PRK13896 cobyrinic acid a,c-di 97.2 0.00038 8.2E-09 65.9 4.6 82 84-187 234-318 (433)
49 PLN02771 carbamoyl-phosphate s 97.2 0.0013 2.8E-08 62.3 7.6 67 110-184 251-317 (415)
50 PRK13566 anthranilate synthase 97.1 0.001 2.2E-08 66.6 6.6 66 111-184 540-605 (720)
51 cd01653 GATase1 Type 1 glutami 97.1 0.0015 3.3E-08 45.1 5.4 88 109-201 13-102 (115)
52 PRK06278 cobyrinic acid a,c-di 97.0 0.0011 2.3E-08 63.6 5.8 63 114-187 12-75 (476)
53 PRK13141 hisH imidazole glycer 97.0 0.00096 2.1E-08 55.9 4.8 69 111-187 13-82 (205)
54 COG0311 PDX2 Predicted glutami 97.0 0.00085 1.8E-08 57.7 4.1 70 111-188 13-83 (194)
55 PRK05637 anthranilate synthase 97.0 0.0022 4.8E-08 54.8 6.6 72 112-191 16-97 (208)
56 cd03146 GAT1_Peptidase_E Type 97.0 0.0026 5.6E-08 54.0 6.9 94 83-188 31-125 (212)
57 PRK08007 para-aminobenzoate sy 96.9 0.0018 3.9E-08 54.0 5.6 72 113-192 15-97 (187)
58 CHL00101 trpG anthranilate syn 96.9 0.0022 4.9E-08 53.4 6.1 66 113-186 15-81 (190)
59 PRK14004 hisH imidazole glycer 96.8 0.0022 4.8E-08 54.9 5.2 69 111-187 13-82 (210)
60 cd03128 GAT_1 Type 1 glutamine 96.8 0.0041 8.8E-08 41.0 5.4 76 111-188 15-90 (92)
61 PRK07567 glutamine amidotransf 96.7 0.0034 7.4E-08 54.7 5.9 79 111-190 18-116 (242)
62 PRK06186 hypothetical protein; 96.7 0.0066 1.4E-07 53.3 7.5 43 138-186 49-91 (229)
63 COG0047 PurL Phosphoribosylfor 96.7 0.0076 1.6E-07 53.3 7.8 84 83-186 2-90 (231)
64 PRK00784 cobyric acid synthase 96.7 0.0017 3.7E-08 61.7 4.0 68 112-187 266-335 (488)
65 TIGR01855 IMP_synth_hisH imida 96.7 0.0029 6.4E-08 52.9 4.9 66 114-187 15-81 (196)
66 PRK05380 pyrG CTP synthetase; 96.6 0.0023 5E-08 62.3 4.4 87 83-186 288-381 (533)
67 PRK07649 para-aminobenzoate/an 96.6 0.0043 9.4E-08 52.3 5.4 64 112-184 14-79 (195)
68 PRK06490 glutamine amidotransf 96.5 0.0037 8E-08 54.4 4.5 68 112-184 23-93 (239)
69 PRK03619 phosphoribosylformylg 96.4 0.011 2.3E-07 50.8 7.1 69 112-187 16-89 (219)
70 PRK06774 para-aminobenzoate sy 96.4 0.0059 1.3E-07 50.7 5.3 69 114-191 16-96 (191)
71 PF07685 GATase_3: CobB/CobQ-l 96.4 0.0008 1.7E-08 54.6 -0.1 48 139-187 4-52 (158)
72 TIGR01823 PabB-fungal aminodeo 96.4 0.018 3.9E-07 58.0 9.3 74 111-186 22-95 (742)
73 KOG3210 Imidazoleglycerol-phos 96.3 0.0036 7.9E-08 53.8 3.5 49 140-188 54-102 (226)
74 PLN02335 anthranilate synthase 96.3 0.012 2.5E-07 50.7 6.6 65 111-184 32-98 (222)
75 PRK08250 glutamine amidotransf 96.3 0.0063 1.4E-07 52.7 4.7 69 112-186 16-93 (235)
76 PRK07053 glutamine amidotransf 96.2 0.01 2.2E-07 51.6 5.5 67 113-184 19-90 (234)
77 PF13507 GATase_5: CobB/CobQ-l 96.1 0.0037 8E-08 55.6 2.3 90 83-186 1-99 (259)
78 PRK14607 bifunctional glutamin 96.0 0.0078 1.7E-07 58.1 4.5 67 112-186 14-82 (534)
79 PRK08857 para-aminobenzoate sy 96.0 0.02 4.3E-07 47.7 6.4 66 111-185 13-80 (193)
80 PLN02617 imidazole glycerol ph 96.0 0.0097 2.1E-07 58.0 5.0 68 111-187 20-89 (538)
81 PRK05282 (alpha)-aspartyl dipe 95.9 0.029 6.2E-07 49.2 7.1 93 82-188 30-124 (233)
82 cd03129 GAT1_Peptidase_E_like 95.9 0.032 6.9E-07 46.9 7.0 94 83-189 29-126 (210)
83 COG0518 GuaA GMP synthase - Gl 95.7 0.016 3.5E-07 49.5 4.5 67 113-184 17-86 (198)
84 PRK09065 glutamine amidotransf 95.6 0.021 4.5E-07 49.5 5.1 41 140-184 52-95 (237)
85 TIGR00313 cobQ cobyric acid sy 95.4 0.0058 1.3E-07 58.2 1.1 45 140-187 282-329 (475)
86 COG1797 CobB Cobyrinic acid a, 95.3 0.082 1.8E-06 50.8 8.3 85 84-188 246-334 (451)
87 COG0118 HisH Glutamine amidotr 95.3 0.04 8.6E-07 48.0 5.6 68 111-186 15-83 (204)
88 PRK05665 amidotransferase; Pro 95.2 0.018 3.9E-07 50.3 3.4 50 140-193 55-117 (240)
89 TIGR01815 TrpE-clade3 anthrani 95.1 0.098 2.1E-06 52.7 8.5 66 111-184 530-595 (717)
90 COG0505 CarA Carbamoylphosphat 95.1 0.078 1.7E-06 49.7 7.2 70 109-186 189-259 (368)
91 cd03133 GATase1_ES1 Type 1 glu 94.4 0.088 1.9E-06 45.5 5.6 47 140-187 80-135 (213)
92 PF03575 Peptidase_S51: Peptid 94.1 0.11 2.5E-06 41.6 5.2 74 111-187 3-79 (154)
93 PLN02889 oxo-acid-lyase/anthra 93.9 0.22 4.8E-06 51.7 8.1 68 114-185 98-170 (918)
94 PLN02327 CTP synthase 93.9 0.17 3.7E-06 49.9 6.9 44 136-186 356-400 (557)
95 PRK11780 isoprenoid biosynthes 93.5 0.17 3.7E-06 43.7 5.6 47 140-187 83-138 (217)
96 PRK05368 homoserine O-succinyl 93.1 0.11 2.5E-06 47.3 4.1 41 141-185 98-143 (302)
97 cd03144 GATase1_ScBLP_like Typ 92.6 0.072 1.6E-06 42.2 1.9 46 141-188 43-88 (114)
98 TIGR01857 FGAM-synthase phosph 92.5 0.55 1.2E-05 50.2 8.6 92 81-186 975-1083(1239)
99 PRK05297 phosphoribosylformylg 92.0 0.58 1.2E-05 50.2 8.1 90 82-186 1034-1133(1290)
100 TIGR01382 PfpI intracellular p 91.8 0.16 3.4E-06 40.4 3.0 45 140-187 58-102 (166)
101 PRK08883 ribulose-phosphate 3- 91.7 0.94 2E-05 39.2 7.8 71 110-183 95-173 (220)
102 PRK09522 bifunctional glutamin 91.1 0.33 7.2E-06 47.2 4.9 71 114-190 18-100 (531)
103 cd03169 GATase1_PfpI_1 Type 1 91.0 0.28 6.1E-06 39.9 3.7 44 141-187 75-118 (180)
104 KOG0370 Multifunctional pyrimi 90.9 0.27 5.8E-06 51.6 4.2 66 109-187 182-250 (1435)
105 TIGR01735 FGAM_synt phosphorib 90.7 0.61 1.3E-05 50.1 6.8 90 81-186 1053-1153(1310)
106 PLN03206 phosphoribosylformylg 90.7 0.87 1.9E-05 49.0 7.8 91 81-186 1035-1135(1307)
107 TIGR02069 cyanophycinase cyano 90.2 0.81 1.8E-05 40.3 6.1 92 83-187 28-126 (250)
108 TIGR01739 tegu_FGAM_synt herpe 89.9 1.7 3.6E-05 46.4 9.2 89 81-185 927-1025(1202)
109 cd03131 GATase1_HTS Type 1 glu 89.8 0.21 4.6E-06 42.2 2.1 43 140-186 60-107 (175)
110 PHA03366 FGAM-synthase; Provis 88.8 1.4 3E-05 47.4 7.7 90 81-185 1026-1124(1304)
111 cd03134 GATase1_PfpI_like A ty 88.2 0.59 1.3E-05 37.0 3.5 45 141-188 61-105 (165)
112 cd03145 GAT1_cyanophycinase Ty 88.0 2.1 4.5E-05 36.6 6.9 61 83-153 29-94 (217)
113 COG4917 EutP Ethanolamine util 87.7 2.6 5.6E-05 35.0 7.0 57 77-143 85-141 (148)
114 COG1492 CobQ Cobyric acid synt 87.7 0.59 1.3E-05 45.5 3.8 59 121-187 276-335 (486)
115 cd03137 GATase1_AraC_1 AraC tr 87.0 0.41 8.8E-06 38.7 1.9 46 140-188 62-107 (187)
116 PF01965 DJ-1_PfpI: DJ-1/PfpI 86.3 0.24 5.1E-06 39.2 0.2 46 140-187 35-81 (147)
117 cd03140 GATase1_PfpI_3 Type 1 85.9 0.97 2.1E-05 36.4 3.6 43 141-187 59-101 (170)
118 COG0303 MoeA Molybdopterin bio 85.3 6.1 0.00013 37.5 9.1 95 81-183 174-276 (404)
119 PRK04155 chaperone protein Hch 85.3 8.2 0.00018 34.9 9.5 42 141-187 146-190 (287)
120 cd03138 GATase1_AraC_2 AraC tr 85.2 0.91 2E-05 37.0 3.2 48 140-188 67-115 (195)
121 COG0693 ThiJ Putative intracel 84.1 1.1 2.5E-05 36.4 3.3 42 140-187 64-109 (188)
122 cd03141 GATase1_Hsp31_like Typ 84.0 1.2 2.5E-05 38.1 3.4 47 140-188 88-134 (221)
123 PRK08745 ribulose-phosphate 3- 83.8 7.3 0.00016 34.0 8.3 76 110-188 99-181 (223)
124 PRK09722 allulose-6-phosphate 83.1 6.6 0.00014 34.5 7.8 60 111-170 98-164 (229)
125 cd03132 GATase1_catalase Type 83.1 1.1 2.3E-05 34.9 2.6 74 112-187 19-105 (142)
126 PRK10355 xylF D-xylose transpo 83.0 11 0.00025 33.4 9.4 61 83-151 25-90 (330)
127 TIGR02667 moaB_proteo molybden 83.0 25 0.00053 28.9 10.9 44 113-156 26-77 (163)
128 cd03148 GATase1_EcHsp31_like T 82.9 3.9 8.4E-05 35.6 6.3 44 141-187 95-139 (232)
129 TIGR01383 not_thiJ DJ-1 family 82.7 1 2.2E-05 36.0 2.4 47 140-188 61-107 (179)
130 cd03135 GATase1_DJ-1 Type 1 gl 82.1 1.2 2.6E-05 34.8 2.5 45 141-188 59-104 (163)
131 PRK14690 molybdopterin biosynt 81.8 12 0.00027 35.4 9.7 76 81-156 191-273 (419)
132 COG0512 PabA Anthranilate/para 81.7 4.6 9.9E-05 35.0 6.1 64 114-185 18-82 (191)
133 PRK08091 ribulose-phosphate 3- 80.9 11 0.00024 33.2 8.4 75 110-187 105-188 (228)
134 PF03358 FMN_red: NADPH-depend 80.8 6.4 0.00014 30.6 6.3 86 85-183 3-112 (152)
135 PRK11574 oxidative-stress-resi 80.6 1.8 3.8E-05 35.6 3.2 45 141-187 65-109 (196)
136 cd03147 GATase1_Ydr533c_like T 80.5 1.8 3.8E-05 37.7 3.3 46 140-187 92-137 (231)
137 PF10662 PduV-EutP: Ethanolami 79.7 5 0.00011 33.0 5.5 61 72-141 78-139 (143)
138 COG0036 Rpe Pentose-5-phosphat 79.5 10 0.00022 33.5 7.6 75 111-189 99-180 (220)
139 cd03139 GATase1_PfpI_2 Type 1 79.4 1.5 3.2E-05 35.1 2.3 44 141-187 61-104 (183)
140 PRK08005 epimerase; Validated 78.1 8.4 0.00018 33.4 6.7 56 111-166 96-158 (210)
141 KOG3179 Predicted glutamine sy 78.1 3.1 6.7E-05 37.0 4.0 68 111-186 28-102 (245)
142 PF13278 DUF4066: Putative ami 77.8 1.7 3.8E-05 34.5 2.3 46 140-188 59-104 (166)
143 PRK13017 dihydroxy-acid dehydr 77.6 16 0.00034 36.7 9.2 94 82-190 46-158 (596)
144 PRK09417 mogA molybdenum cofac 76.5 28 0.00061 29.7 9.4 22 136-157 58-81 (193)
145 cd03136 GATase1_AraC_ArgR_like 76.4 1.9 4.2E-05 34.8 2.2 44 141-188 63-106 (185)
146 PRK10680 molybdopterin biosynt 76.4 16 0.00035 34.5 8.6 75 81-156 175-257 (411)
147 PRK09393 ftrA transcriptional 74.8 2.4 5.1E-05 37.6 2.5 44 140-187 73-116 (322)
148 PRK13016 dihydroxy-acid dehydr 74.7 14 0.00029 37.0 7.8 98 77-189 36-152 (577)
149 TIGR00110 ilvD dihydroxy-acid 73.8 20 0.00042 35.6 8.6 95 82-191 10-128 (535)
150 PRK00911 dihydroxy-acid dehydr 73.6 19 0.00042 35.8 8.6 94 81-189 29-146 (552)
151 KOG2387 CTP synthase (UTP-ammo 73.6 5.7 0.00012 39.0 4.8 46 135-186 356-401 (585)
152 PRK14491 putative bifunctional 73.3 18 0.00039 35.9 8.4 77 81-157 365-448 (597)
153 PF00834 Ribul_P_3_epim: Ribul 72.5 3.7 7.9E-05 35.2 3.0 74 111-187 95-175 (201)
154 PF05368 NmrA: NmrA-like famil 72.4 22 0.00047 29.4 7.6 61 111-173 34-94 (233)
155 COG0504 PyrG CTP synthase (UTP 72.4 4.7 0.0001 39.7 4.0 42 139-186 340-381 (533)
156 cd00887 MoeA MoeA family. Memb 72.0 30 0.00066 32.2 9.1 76 81-156 166-248 (394)
157 PRK14497 putative molybdopteri 71.6 20 0.00044 35.4 8.2 75 81-156 177-259 (546)
158 PLN02699 Bifunctional molybdop 71.3 65 0.0014 32.5 11.8 43 117-159 491-541 (659)
159 TIGR00177 molyb_syn molybdenum 70.6 11 0.00025 29.9 5.3 45 112-156 30-80 (144)
160 PRK11249 katE hydroperoxidase 70.5 8.8 0.00019 39.4 5.6 75 111-187 614-701 (752)
161 PRK01215 competence damage-ind 70.5 27 0.00059 31.1 8.2 66 81-152 1-72 (264)
162 COG0655 WrbA Multimeric flavod 70.1 29 0.00064 29.0 7.9 75 85-172 3-100 (207)
163 PRK11121 nrdG anaerobic ribonu 69.9 15 0.00033 29.7 6.0 44 143-188 66-109 (154)
164 PRK14057 epimerase; Provisiona 69.7 19 0.00041 32.3 7.0 59 111-169 113-187 (254)
165 PRK06131 dihydroxy-acid dehydr 69.1 13 0.00028 37.1 6.3 73 77-153 32-122 (571)
166 COG3442 Predicted glutamine am 69.1 3.1 6.8E-05 37.2 1.9 66 117-187 30-97 (250)
167 PRK10342 glycerate kinase I; P 68.7 6.5 0.00014 37.2 4.0 53 134-192 276-330 (381)
168 COG2185 Sbm Methylmalonyl-CoA 68.4 32 0.00069 28.5 7.5 74 109-189 27-104 (143)
169 PRK10569 NAD(P)H-dependent FMN 67.7 28 0.00061 29.2 7.3 74 85-171 3-90 (191)
170 PRK12448 dihydroxy-acid dehydr 67.2 41 0.0009 33.9 9.4 95 81-191 31-150 (615)
171 TIGR02826 RNR_activ_nrdG3 anae 67.0 12 0.00026 30.4 4.8 39 143-189 62-100 (147)
172 KOG1224 Para-aminobenzoate (PA 66.9 13 0.00028 37.4 5.8 73 107-186 25-104 (767)
173 TIGR00045 glycerate kinase. Th 65.9 9 0.00019 36.2 4.3 52 134-191 275-328 (375)
174 cd06305 PBP1_methylthioribose_ 65.2 56 0.0012 26.8 8.6 44 108-151 16-64 (273)
175 cd06281 PBP1_LacI_like_5 Ligan 65.2 39 0.00084 27.9 7.7 46 107-152 15-65 (269)
176 PRK00170 azoreductase; Reviewe 64.7 56 0.0012 26.6 8.4 77 84-172 3-111 (201)
177 cd00758 MoCF_BD MoCF_BD: molyb 64.5 20 0.00043 28.0 5.5 46 111-156 21-72 (133)
178 PF04204 HTS: Homoserine O-suc 63.9 5.7 0.00012 36.5 2.6 42 141-186 97-143 (298)
179 PF02514 CobN-Mg_chel: CobN/Ma 63.4 32 0.00069 36.8 8.2 65 81-152 69-141 (1098)
180 cd03522 MoeA_like MoeA_like. T 63.2 51 0.0011 30.2 8.6 73 81-159 157-236 (312)
181 TIGR03566 FMN_reduc_MsuE FMN r 62.6 69 0.0015 25.9 8.5 90 85-187 2-113 (174)
182 cd01542 PBP1_TreR_like Ligand- 62.6 29 0.00063 28.3 6.4 44 108-151 16-64 (259)
183 PRK14498 putative molybdopteri 62.6 38 0.00081 33.3 8.1 77 81-157 184-267 (633)
184 cd01575 PBP1_GntR Ligand-bindi 61.6 71 0.0015 26.0 8.5 44 109-152 17-65 (268)
185 COG4242 CphB Cyanophycinase an 61.3 26 0.00056 32.1 6.2 82 83-176 52-140 (293)
186 TIGR01001 metA homoserine O-su 60.5 7 0.00015 36.0 2.5 43 140-186 97-144 (300)
187 cd06280 PBP1_LacI_like_4 Ligan 60.1 41 0.0009 27.7 6.9 43 109-151 17-64 (263)
188 cd06292 PBP1_LacI_like_10 Liga 60.0 37 0.00081 28.0 6.6 45 107-151 15-64 (273)
189 PRK09932 glycerate kinase II; 59.9 11 0.00025 35.6 3.9 52 134-191 276-329 (381)
190 cd06299 PBP1_LacI_like_13 Liga 59.8 74 0.0016 26.0 8.3 44 109-152 17-65 (265)
191 cd00886 MogA_MoaB MogA_MoaB fa 59.1 55 0.0012 26.2 7.3 41 116-156 28-75 (152)
192 cd06282 PBP1_GntR_like_2 Ligan 58.5 67 0.0014 26.1 7.8 44 109-152 17-65 (266)
193 cd06274 PBP1_FruR Ligand bindi 58.3 50 0.0011 27.1 7.1 45 108-152 16-65 (264)
194 cd00885 cinA Competence-damage 57.5 28 0.00061 28.8 5.5 43 111-153 21-69 (170)
195 cd01538 PBP1_ABC_xylose_bindin 57.4 71 0.0015 27.0 8.1 45 107-151 15-64 (288)
196 cd06295 PBP1_CelR Ligand bindi 56.9 1.1E+02 0.0023 25.3 8.9 43 109-151 28-73 (275)
197 PRK13125 trpA tryptophan synth 56.3 43 0.00092 29.0 6.6 39 111-149 119-158 (244)
198 PF07085 DRTGG: DRTGG domain; 56.2 8 0.00017 28.9 1.8 51 122-183 41-91 (105)
199 COG0129 IlvD Dihydroxyacid deh 56.2 28 0.00062 34.8 6.0 69 81-153 40-131 (575)
200 cd06293 PBP1_LacI_like_11 Liga 56.1 62 0.0013 26.7 7.3 44 107-150 15-63 (269)
201 cd06284 PBP1_LacI_like_6 Ligan 55.2 58 0.0013 26.5 7.0 46 107-152 15-65 (267)
202 smart00852 MoCF_biosynth Proba 55.0 34 0.00074 26.5 5.3 45 112-156 21-71 (135)
203 cd06288 PBP1_sucrose_transcrip 54.8 63 0.0014 26.4 7.1 43 109-151 18-65 (269)
204 COG1058 CinA Predicted nucleot 54.2 22 0.00047 32.0 4.5 88 105-196 22-151 (255)
205 cd06283 PBP1_RegR_EndR_KdgR_li 53.4 71 0.0015 26.0 7.2 45 107-151 15-64 (267)
206 cd06291 PBP1_Qymf_like Ligand 53.3 51 0.0011 27.0 6.4 46 106-151 14-64 (265)
207 cd06298 PBP1_CcpA_like Ligand- 53.2 60 0.0013 26.5 6.7 43 109-151 17-64 (268)
208 PRK10014 DNA-binding transcrip 52.7 1.1E+02 0.0024 26.4 8.6 62 83-152 64-130 (342)
209 cd06322 PBP1_ABC_sugar_binding 52.1 53 0.0012 26.9 6.3 43 109-151 17-64 (267)
210 PF02602 HEM4: Uroporphyrinoge 50.6 32 0.00069 28.4 4.7 42 112-153 2-53 (231)
211 KOG1622 GMP synthase [Nucleoti 50.6 8.6 0.00019 37.8 1.5 56 117-184 36-95 (552)
212 cd06275 PBP1_PurR Ligand-bindi 50.6 74 0.0016 26.0 6.9 43 109-151 17-64 (269)
213 PRK10423 transcriptional repre 50.4 1E+02 0.0023 26.3 8.0 62 83-152 56-122 (327)
214 TIGR02405 trehalos_R_Ecol treh 50.4 87 0.0019 26.9 7.6 62 83-152 59-125 (311)
215 TIGR00259 thylakoid_BtpA membr 50.4 1.1E+02 0.0024 27.5 8.4 59 113-171 190-254 (257)
216 PRK09739 hypothetical protein; 50.2 1.3E+02 0.0029 24.7 8.4 76 83-171 4-103 (199)
217 TIGR01319 glmL_fam conserved h 49.9 64 0.0014 31.5 7.2 62 115-181 91-155 (463)
218 PRK11303 DNA-binding transcrip 49.5 1.4E+02 0.0029 25.6 8.6 61 83-151 61-126 (328)
219 COG3340 PepE Peptidase E [Amin 49.5 43 0.00094 29.8 5.5 40 114-153 55-95 (224)
220 PRK08211 putative dehydratase; 49.3 1.7E+02 0.0036 30.0 10.2 98 81-188 59-189 (655)
221 cd01540 PBP1_arabinose_binding 49.2 1.4E+02 0.003 24.8 8.5 68 108-186 16-88 (289)
222 PF03437 BtpA: BtpA family; I 49.0 64 0.0014 28.9 6.7 61 110-170 188-253 (254)
223 PRK10703 DNA-binding transcrip 47.9 1.1E+02 0.0024 26.4 7.9 61 83-151 59-124 (341)
224 PF10686 DUF2493: Protein of u 47.7 28 0.0006 25.2 3.4 10 146-155 6-15 (71)
225 TIGR02417 fruct_sucro_rep D-fr 47.6 1.6E+02 0.0035 25.2 8.8 61 83-151 60-125 (327)
226 cd06270 PBP1_GalS_like Ligand 47.6 86 0.0019 25.8 6.9 43 109-151 17-64 (268)
227 PRK13238 tnaA tryptophanase/L- 47.5 53 0.0011 31.3 6.2 57 112-171 128-209 (460)
228 cd06324 PBP1_ABC_sugar_binding 47.2 1.8E+02 0.0039 24.9 9.1 43 109-151 18-67 (305)
229 PRK05569 flavodoxin; Provision 47.0 1.2E+02 0.0025 23.3 7.2 75 105-187 14-95 (141)
230 cd06272 PBP1_hexuronate_repres 46.3 73 0.0016 26.1 6.2 43 109-151 17-60 (261)
231 PRK10653 D-ribose transporter 45.9 1.9E+02 0.004 24.6 9.8 61 83-151 26-91 (295)
232 PRK09492 treR trehalose repres 45.8 1.3E+02 0.0027 25.7 7.8 60 84-151 63-127 (315)
233 cd06273 PBP1_GntR_like_1 This 45.4 96 0.0021 25.4 6.8 43 109-151 17-64 (268)
234 PLN03034 phosphoglycerate kina 45.3 56 0.0012 32.1 6.1 74 114-187 258-351 (481)
235 TIGR01464 hemE uroporphyrinoge 44.7 62 0.0013 29.0 6.0 33 154-188 207-244 (338)
236 cd01545 PBP1_SalR Ligand-bindi 44.4 1.2E+02 0.0025 24.8 7.2 45 108-152 16-66 (270)
237 TIGR03567 FMN_reduc_SsuE FMN r 44.4 1.1E+02 0.0025 24.6 7.0 74 85-171 2-89 (171)
238 TIGR02634 xylF D-xylose ABC tr 44.2 1.7E+02 0.0037 25.2 8.5 40 111-150 18-62 (302)
239 cd06301 PBP1_rhizopine_binding 44.2 1.8E+02 0.0039 23.9 8.3 46 107-152 15-66 (272)
240 cd06321 PBP1_ABC_sugar_binding 44.0 1.6E+02 0.0034 24.2 7.9 43 108-150 16-65 (271)
241 cd06286 PBP1_CcpB_like Ligand- 44.0 1.1E+02 0.0025 24.8 7.0 44 108-151 16-64 (260)
242 cd02067 B12-binding B12 bindin 43.5 1.4E+02 0.003 22.4 9.0 81 105-190 10-93 (119)
243 cd06259 YdcF-like YdcF-like. Y 43.3 82 0.0018 24.4 5.8 46 144-190 1-47 (150)
244 TIGR03432 yjhG_yagF probable d 43.0 1.2E+02 0.0025 31.0 8.0 74 81-154 53-158 (640)
245 KOG1367 3-phosphoglycerate kin 42.9 29 0.00063 33.0 3.6 74 118-191 199-293 (416)
246 KOG2764 Putative transcription 42.9 36 0.00078 30.7 4.1 45 141-187 66-110 (247)
247 PRK00115 hemE uroporphyrinogen 42.9 72 0.0016 28.8 6.1 33 153-188 212-250 (346)
248 cd06290 PBP1_LacI_like_9 Ligan 42.7 1.2E+02 0.0026 24.8 7.0 43 109-151 17-64 (265)
249 PF00532 Peripla_BP_1: Peripla 41.2 70 0.0015 27.8 5.6 42 109-151 19-65 (279)
250 PRK11041 DNA-binding transcrip 41.0 1.8E+02 0.0039 24.5 8.0 60 84-151 36-100 (309)
251 cd06315 PBP1_ABC_sugar_binding 40.8 1.2E+02 0.0026 25.6 6.8 43 109-151 18-65 (280)
252 cd06285 PBP1_LacI_like_7 Ligan 40.4 1.4E+02 0.003 24.5 7.0 43 109-151 17-64 (265)
253 TIGR01196 edd 6-phosphoglucona 40.4 2.4E+02 0.0052 28.6 9.7 95 81-190 62-182 (601)
254 cd06297 PBP1_LacI_like_12 Liga 40.2 1.2E+02 0.0026 25.2 6.7 45 107-151 15-64 (269)
255 cd06310 PBP1_ABC_sugar_binding 40.0 1.2E+02 0.0026 24.9 6.6 45 107-151 15-66 (273)
256 PLN02699 Bifunctional molybdop 39.4 2.6E+02 0.0056 28.3 9.9 44 113-156 213-263 (659)
257 TIGR02491 NrdG anaerobic ribon 38.9 77 0.0017 25.5 5.1 45 143-189 64-108 (154)
258 PTZ00170 D-ribulose-5-phosphat 38.8 1E+02 0.0022 26.6 6.1 48 110-160 103-153 (228)
259 cd02940 DHPD_FMN Dihydropyrimi 38.7 2.2E+02 0.0047 25.3 8.4 40 110-149 156-200 (299)
260 cd06271 PBP1_AglR_RafR_like Li 38.4 1.8E+02 0.0038 23.6 7.3 44 109-152 21-69 (268)
261 cd06323 PBP1_ribose_binding Pe 38.3 1.2E+02 0.0026 24.6 6.3 41 110-150 18-63 (268)
262 TIGR01481 ccpA catabolite cont 38.1 1.8E+02 0.0039 24.9 7.7 61 83-151 59-124 (329)
263 cd08580 GDPD_Rv2277c_like Glyc 37.6 76 0.0017 28.1 5.3 40 107-147 215-256 (263)
264 cd04726 KGPDC_HPS 3-Keto-L-gul 37.5 2.2E+02 0.0048 23.0 9.0 58 111-168 93-156 (202)
265 cd06578 HemD Uroporphyrinogen- 37.5 45 0.00097 27.0 3.6 43 110-152 10-59 (239)
266 cd06317 PBP1_ABC_sugar_binding 37.3 1.3E+02 0.0027 24.7 6.3 43 109-151 18-65 (275)
267 PF13941 MutL: MutL protein 37.3 1.1E+02 0.0024 29.8 6.7 56 115-175 95-152 (457)
268 cd00717 URO-D Uroporphyrinogen 37.1 89 0.0019 27.9 5.7 34 153-188 203-241 (335)
269 PF00920 ILVD_EDD: Dehydratase 37.1 9 0.0002 37.8 -0.7 68 83-154 1-91 (521)
270 cd06318 PBP1_ABC_sugar_binding 37.1 1.3E+02 0.0027 24.9 6.3 41 110-150 18-63 (282)
271 PRK10401 DNA-binding transcrip 36.9 2.2E+02 0.0048 24.7 8.1 61 83-151 59-124 (346)
272 PF13297 Telomere_Sde2_2: Telo 36.8 10 0.00022 27.3 -0.3 8 183-190 30-37 (60)
273 COG0521 MoaB Molybdopterin bio 36.7 1.4E+02 0.0031 25.3 6.6 59 110-170 29-97 (169)
274 PRK14987 gluconate operon tran 36.1 2E+02 0.0042 24.8 7.6 60 83-150 63-127 (331)
275 cd00318 Phosphoglycerate_kinas 35.9 96 0.0021 29.7 6.0 68 120-187 186-273 (397)
276 PF09825 BPL_N: Biotin-protein 35.9 38 0.00083 31.9 3.3 16 139-154 46-61 (367)
277 PRK07523 gluconate 5-dehydroge 35.8 2.4E+02 0.0052 23.3 7.8 41 113-153 50-98 (255)
278 cd01537 PBP1_Repressors_Sugar_ 35.6 1.9E+02 0.0041 23.0 6.9 44 109-152 17-65 (264)
279 PF00389 2-Hacid_dh: D-isomer 35.2 84 0.0018 24.0 4.7 48 110-159 8-55 (133)
280 cd08568 GDPD_TmGDE_like Glycer 35.1 99 0.0022 25.9 5.4 36 111-147 184-219 (226)
281 PRK09054 phosphogluconate dehy 34.8 2.4E+02 0.0051 28.7 8.7 94 81-189 63-182 (603)
282 KOG1436 Dihydroorotate dehydro 34.7 81 0.0017 30.0 5.1 56 127-188 259-341 (398)
283 COG0431 Predicted flavoprotein 34.5 1.6E+02 0.0036 24.3 6.6 88 84-185 2-108 (184)
284 cd01536 PBP1_ABC_sugar_binding 34.5 1.6E+02 0.0034 23.7 6.4 44 108-151 16-64 (267)
285 smart00775 LNS2 LNS2 domain. T 34.5 2.5E+02 0.0053 22.7 8.9 83 111-195 33-135 (157)
286 PRK10936 TMAO reductase system 34.3 2.6E+02 0.0056 24.8 8.2 60 83-150 46-112 (343)
287 PLN02417 dihydrodipicolinate s 34.3 2.2E+02 0.0047 25.1 7.7 45 142-187 35-80 (280)
288 COG4285 Uncharacterized conser 33.9 45 0.00097 30.1 3.2 41 139-187 46-92 (253)
289 TIGR01463 mtaA_cmuA methyltran 33.6 1.5E+02 0.0032 26.5 6.6 36 153-188 208-245 (340)
290 cd01541 PBP1_AraR Ligand-bindi 33.5 1.6E+02 0.0035 24.2 6.4 43 109-151 17-64 (273)
291 cd06309 PBP1_YtfQ_like Peripla 33.1 1.9E+02 0.0041 23.9 6.7 43 109-151 17-64 (273)
292 cd06267 PBP1_LacI_sugar_bindin 33.1 1.8E+02 0.0039 23.2 6.4 44 109-152 17-65 (264)
293 cd01539 PBP1_GGBP Periplasmic 33.0 3.1E+02 0.0068 23.4 8.4 42 109-150 17-65 (303)
294 PRK13962 bifunctional phosphog 32.5 1.1E+02 0.0024 31.1 6.0 69 119-187 184-272 (645)
295 cd06289 PBP1_MalI_like Ligand- 32.4 2.7E+02 0.0059 22.5 7.8 37 115-151 23-64 (268)
296 PF02595 Gly_kinase: Glycerate 32.2 12 0.00026 35.3 -0.7 48 135-187 277-326 (377)
297 PF07002 Copine: Copine; Inte 32.1 62 0.0013 26.4 3.6 44 156-200 10-57 (146)
298 TIGR01163 rpe ribulose-phospha 32.1 2.8E+02 0.006 22.5 8.6 38 111-148 94-132 (210)
299 cd06278 PBP1_LacI_like_2 Ligan 31.8 2.4E+02 0.0051 22.8 7.0 43 109-151 17-63 (266)
300 cd06277 PBP1_LacI_like_1 Ligan 31.7 2.1E+02 0.0046 23.5 6.8 45 107-151 18-67 (268)
301 cd02808 GltS_FMN Glutamate syn 31.6 3.2E+02 0.007 25.5 8.7 41 111-151 202-247 (392)
302 cd01574 PBP1_LacI Ligand-bindi 31.3 2.2E+02 0.0047 23.2 6.8 44 109-152 17-66 (264)
303 PRK05752 uroporphyrinogen-III 31.3 79 0.0017 27.1 4.3 40 111-150 16-63 (255)
304 PRK03767 NAD(P)H:quinone oxido 31.2 3E+02 0.0066 22.7 8.5 76 106-186 15-117 (200)
305 PRK03170 dihydrodipicolinate s 30.9 2E+02 0.0043 25.2 6.8 44 143-187 36-81 (292)
306 PF00289 CPSase_L_chain: Carba 30.6 93 0.002 24.0 4.2 61 109-172 13-73 (110)
307 PRK00073 pgk phosphoglycerate 30.4 81 0.0018 30.0 4.5 69 118-186 180-268 (389)
308 cd00950 DHDPS Dihydrodipicolin 30.3 2.8E+02 0.006 24.1 7.6 9 143-151 35-43 (284)
309 cd03789 GT1_LPS_heptosyltransf 30.3 2.5E+02 0.0055 23.9 7.2 101 83-198 121-236 (279)
310 cd06296 PBP1_CatR_like Ligand- 30.2 2.3E+02 0.0049 23.2 6.7 41 111-151 19-64 (270)
311 KOG1207 Diacetyl reductase/L-x 30.1 1E+02 0.0022 27.4 4.7 44 109-154 19-62 (245)
312 TIGR02313 HpaI-NOT-DapA 2,4-di 30.1 2.9E+02 0.0063 24.6 7.8 49 133-182 20-74 (294)
313 PRK12440 acetate kinase; Revie 30.0 33 0.00071 32.8 1.8 16 138-153 316-331 (397)
314 PTZ00005 phosphoglycerate kina 29.8 2E+02 0.0042 27.8 7.0 75 113-187 196-291 (417)
315 cd02252 nylC_like nylC-like fa 29.8 65 0.0014 29.2 3.6 58 137-197 52-116 (260)
316 TIGR00674 dapA dihydrodipicoli 29.6 2.8E+02 0.0061 24.3 7.6 42 143-185 33-75 (285)
317 COG1609 PurR Transcriptional r 29.6 3.2E+02 0.0069 24.5 8.1 60 83-150 58-122 (333)
318 PRK08811 uroporphyrinogen-III 29.3 1E+02 0.0022 27.1 4.8 41 111-151 31-78 (266)
319 PF00994 MoCF_biosynth: Probab 29.3 1E+02 0.0022 24.0 4.4 47 111-157 19-71 (144)
320 KOG0623 Glutamine amidotransfe 29.2 1.3E+02 0.0028 29.1 5.6 69 111-186 15-83 (541)
321 PRK12379 propionate/acetate ki 29.1 34 0.00073 32.7 1.8 15 139-153 314-328 (396)
322 cd08197 DOIS 2-deoxy-scyllo-in 28.9 2.6E+02 0.0056 25.8 7.5 42 146-189 56-97 (355)
323 cd06312 PBP1_ABC_sugar_binding 28.8 2.6E+02 0.0057 23.1 6.9 43 109-151 18-66 (271)
324 cd08585 GDPD_like_3 Glyceropho 28.8 1.3E+02 0.0028 25.9 5.2 42 108-150 195-237 (237)
325 cd06300 PBP1_ABC_sugar_binding 28.6 3.3E+02 0.0072 22.3 8.5 44 108-151 16-69 (272)
326 PRK09189 uroporphyrinogen-III 27.8 96 0.0021 26.2 4.2 41 111-151 13-57 (240)
327 PF14272 Gly_rich_SFCGS: Glyci 27.8 1E+02 0.0022 24.5 4.0 40 112-151 14-56 (115)
328 TIGR00262 trpA tryptophan synt 27.7 2.5E+02 0.0054 24.7 6.9 39 111-149 130-169 (256)
329 PRK07058 acetate kinase; Provi 27.5 38 0.00082 32.4 1.8 15 139-153 315-329 (396)
330 cd06302 PBP1_LsrB_Quorum_Sensi 27.3 2.1E+02 0.0045 24.4 6.2 42 109-150 17-64 (298)
331 cd00617 Tnase_like Tryptophana 27.2 1.6E+02 0.0035 27.9 6.0 50 112-161 103-177 (431)
332 PRK12493 magnesium chelatase s 26.8 2.2E+02 0.0048 31.4 7.4 63 83-152 253-326 (1310)
333 PF02662 FlpD: Methyl-viologen 26.5 3.2E+02 0.0069 21.5 6.9 34 120-153 27-63 (124)
334 PRK08085 gluconate 5-dehydroge 26.3 3.6E+02 0.0079 22.1 7.3 37 116-152 52-96 (254)
335 PLN02282 phosphoglycerate kina 26.2 1.3E+02 0.0028 28.8 5.1 69 118-186 187-275 (401)
336 PRK05867 short chain dehydroge 26.1 3.5E+02 0.0076 22.3 7.2 39 114-152 50-96 (253)
337 COG0282 ackA Acetate kinase [E 25.3 43 0.00093 32.1 1.7 16 137-152 314-329 (396)
338 COG4090 Uncharacterized protei 25.2 1.1E+02 0.0023 25.7 3.8 39 140-184 83-123 (154)
339 PRK07239 bifunctional uroporph 25.2 1.5E+02 0.0033 26.9 5.3 42 111-152 23-74 (381)
340 cd06306 PBP1_TorT-like TorT-li 25.1 2.7E+02 0.0059 23.1 6.4 42 109-150 17-65 (268)
341 PF04016 DUF364: Domain of unk 25.0 45 0.00097 27.0 1.6 54 113-170 23-86 (147)
342 TIGR02690 resist_ArsH arsenica 24.9 4.6E+02 0.01 22.8 8.3 78 85-175 29-118 (219)
343 TIGR02195 heptsyl_trn_II lipop 24.8 3.6E+02 0.0079 23.6 7.4 95 82-188 173-281 (334)
344 PRK12608 transcription termina 24.6 4.5E+02 0.0097 25.1 8.3 77 105-181 145-224 (380)
345 cd06311 PBP1_ABC_sugar_binding 24.6 4E+02 0.0087 21.9 8.6 43 109-151 17-69 (274)
346 COG0426 FpaA Uncharacterized f 24.6 3.6E+02 0.0078 25.9 7.7 78 108-186 262-341 (388)
347 cd00762 NAD_bind_malic_enz NAD 24.5 1.4E+02 0.0031 26.8 4.8 55 85-153 110-170 (254)
348 cd00951 KDGDH 5-dehydro-4-deox 24.2 4.6E+02 0.01 23.1 8.0 41 143-184 35-77 (289)
349 PF00162 PGK: Phosphoglycerate 24.2 1.5E+02 0.0032 28.2 5.1 81 109-189 172-275 (384)
350 PF10087 DUF2325: Uncharacteri 23.9 1.6E+02 0.0034 21.7 4.2 43 110-152 12-58 (97)
351 PRK10916 ADP-heptose:LPS hepto 23.8 4.1E+02 0.0089 23.6 7.6 102 82-197 179-298 (348)
352 cd06308 PBP1_sensor_kinase_lik 23.8 2.8E+02 0.0062 22.8 6.2 36 115-150 23-64 (270)
353 PRK12397 propionate kinase; Re 23.6 49 0.0011 31.7 1.8 14 140-153 319-332 (404)
354 PRK09355 hydroxyethylthiazole 23.4 1.7E+02 0.0037 25.6 5.0 37 109-148 23-60 (263)
355 PRK03620 5-dehydro-4-deoxygluc 23.4 2.6E+02 0.0057 24.9 6.3 42 143-185 42-85 (303)
356 PRK05928 hemD uroporphyrinogen 23.3 1.3E+02 0.0028 24.7 4.0 43 111-153 14-63 (249)
357 cd08195 DHQS Dehydroquinate sy 23.1 1.8E+02 0.0038 26.4 5.2 30 159-188 68-97 (345)
358 PF01075 Glyco_transf_9: Glyco 23.1 1.3E+02 0.0029 24.9 4.1 95 81-188 103-213 (247)
359 PRK10727 DNA-binding transcrip 23.0 5E+02 0.011 22.5 8.1 61 83-151 59-124 (343)
360 PRK07157 acetate kinase; Provi 22.8 52 0.0011 31.5 1.8 16 138-153 315-331 (400)
361 PF13353 Fer4_12: 4Fe-4S singl 22.7 71 0.0015 24.1 2.3 32 142-173 52-83 (139)
362 PRK07666 fabG 3-ketoacyl-(acyl 22.7 4.2E+02 0.0091 21.5 7.3 39 115-153 49-95 (239)
363 PRK05568 flavodoxin; Provision 22.7 3.5E+02 0.0076 20.6 9.2 78 105-186 14-93 (142)
364 PRK00180 acetate kinase A/prop 22.7 51 0.0011 31.5 1.7 13 141-153 322-334 (402)
365 TIGR03577 EF_0830 conserved hy 22.6 1.4E+02 0.003 23.9 3.8 39 113-151 15-56 (115)
366 PRK10427 putative PTS system f 22.6 3.8E+02 0.0083 21.0 6.9 80 84-173 4-103 (114)
367 PRK07109 short chain dehydroge 22.5 3.3E+02 0.0072 24.2 6.8 39 114-152 49-95 (334)
368 PRK13111 trpA tryptophan synth 22.4 1.9E+02 0.0041 25.7 5.2 42 109-150 187-229 (258)
369 PRK06252 methylcobalamin:coenz 22.1 2.5E+02 0.0053 25.0 5.9 44 143-187 194-242 (339)
370 cd08559 GDPD_periplasmic_GlpQ_ 22.1 1.6E+02 0.0034 26.1 4.6 37 111-147 246-292 (296)
371 TIGR02193 heptsyl_trn_I lipopo 22.0 2.4E+02 0.0053 24.5 5.7 94 82-188 178-284 (319)
372 PLN03069 magnesiumprotoporphyr 21.9 4.2E+02 0.0091 29.1 8.4 70 81-157 264-344 (1220)
373 PRK06252 methylcobalamin:coenz 21.7 1.9E+02 0.0041 25.7 5.1 63 112-177 244-308 (339)
374 cd06319 PBP1_ABC_sugar_binding 21.6 3.5E+02 0.0076 22.1 6.3 42 109-150 17-63 (277)
375 PRK06114 short chain dehydroge 21.4 4.5E+02 0.0098 21.7 7.0 39 114-152 50-96 (254)
376 TIGR00016 ackA acetate kinase. 21.3 57 0.0012 31.2 1.7 15 139-153 323-338 (404)
377 PLN02591 tryptophan synthase 21.1 2E+02 0.0044 25.5 5.1 39 110-148 177-217 (250)
378 PRK01355 azoreductase; Reviewe 21.1 4.8E+02 0.01 21.6 8.0 77 84-171 3-105 (199)
379 cd04724 Tryptophan_synthase_al 20.9 5.4E+02 0.012 22.2 7.6 38 111-148 119-158 (242)
380 COG3199 Predicted inorganic po 20.8 1.1E+02 0.0024 29.0 3.4 39 137-187 94-133 (355)
381 COG0434 SgcQ Predicted TIM-bar 20.8 4.3E+02 0.0093 24.2 7.0 63 109-171 192-259 (263)
382 TIGR02127 pyrF_sub2 orotidine 20.8 3.2E+02 0.0069 24.4 6.2 82 109-190 101-199 (261)
383 PRK05565 fabG 3-ketoacyl-(acyl 20.7 4.5E+02 0.0097 21.1 7.1 38 116-153 49-94 (247)
384 cd06313 PBP1_ABC_sugar_binding 20.7 5E+02 0.011 21.6 8.5 65 109-183 17-86 (272)
385 PF12813 XPG_I_2: XPG domain c 20.6 2.1E+02 0.0046 25.2 5.0 45 108-153 4-51 (246)
386 cd00952 CHBPH_aldolase Trans-o 20.5 4.1E+02 0.0089 23.8 7.0 42 143-185 43-85 (309)
387 cd02922 FCB2_FMN Flavocytochro 20.2 6.7E+02 0.015 23.2 8.5 41 110-150 201-242 (344)
388 cd06314 PBP1_tmGBP Periplasmic 20.2 3.7E+02 0.0081 22.1 6.3 9 142-150 55-63 (271)
389 PRK07097 gluconate 5-dehydroge 20.2 4.8E+02 0.01 21.7 7.0 38 115-152 52-97 (265)
390 cd05569 PTS_IIB_fructose PTS_I 20.2 3.7E+02 0.0081 19.9 5.7 66 85-159 1-70 (96)
391 PRK07792 fabG 3-ketoacyl-(acyl 20.1 5.1E+02 0.011 22.5 7.4 39 114-152 54-99 (306)
392 PF02698 DUF218: DUF218 domain 20.1 83 0.0018 24.5 2.2 9 145-153 40-48 (155)
393 COG1587 HemD Uroporphyrinogen- 20.1 1.2E+02 0.0026 26.0 3.4 56 110-173 13-73 (248)
394 PRK08063 enoyl-(acyl carrier p 20.0 4.4E+02 0.0096 21.4 6.6 38 115-152 47-92 (250)
No 1
>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]
Probab=99.97 E-value=2.7e-32 Score=240.36 Aligned_cols=155 Identities=53% Similarity=0.848 Sum_probs=137.3
Q ss_pred hhhhHHHHHHHHHhhhhccCCCCcccccCccccC-CCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCCCCCCCCCCchhhh
Q 028817 32 TWNYIWISIFLYLFKRLSKSNPQSTILLPSQQRN-NDSVPRSPAATDRRLNNRPVIGILSHPGDGASGRLNNSKNASYIA 110 (203)
Q Consensus 32 m~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~~~~~~~~~~~~~~~~~rPVIGIta~~~~~~~~~~~~~~~~syI~ 110 (203)
||+.++++.|+++.....+....+.|+||+|.+. .+.++.|. +||++++.||||||+++++++..+++.+.+.++||+
T Consensus 1 m~~~~~~~~l~~~~~S~~~~~~~~~ilLps~~g~e~SRspvcs-apdpnlnykPvIGIL~hpg~g~~~rl~n~t~~~yIA 79 (340)
T KOG1559|consen 1 MWRFLFFLSLLFFMASPGALLCAESILLPSQAGFELSRSPVCS-APDPNLNYKPVIGILSHPGDGASGRLKNATGRSYIA 79 (340)
T ss_pred CcchHHHHHHHHhccChHHHHHHhheecccccccccccCcccc-CCCCCcccCceeEEeccCCCCccceeccccCcchhH
Confidence 8885544444433222345556778999999997 44589999 999999999999999999998778888889999999
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCC-cceEeeCCc
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQS-LVHGITGDV 187 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~-PV~Gic~~~ 187 (203)
++|||..|.+|||+|++.++++++.+...|+.||||+||||+.....||+.+++||++++++||+|++ ||||||=|-
T Consensus 80 ASYVK~aEsgGARViPli~nepEe~lfqklelvNGviftGGwak~~dY~~vvkkifnk~le~nDaGehFPvyg~CLGF 157 (340)
T KOG1559|consen 80 ASYVKLAESGGARVIPLIYNEPEEILFQKLELVNGVIFTGGWAKRGDYFEVVKKIFNKVLERNDAGEHFPVYGICLGF 157 (340)
T ss_pred HHHHHHHHcCCceEEEEecCCcHHHHHHHHHHhceeEecCcccccccHHHHHHHHHHHHHhccCCccccchhhhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 999999773
No 2
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=99.91 E-value=1.1e-24 Score=185.53 Aligned_cols=110 Identities=34% Similarity=0.492 Sum_probs=83.7
Q ss_pred CEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCC-CCCCcChHH-
Q 028817 84 PVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGW-AKKGLYFQI- 161 (203)
Q Consensus 84 PVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~-DVdP~yY~~- 161 (203)
|||||+++..... ...+.....+|+.++|+++|++|||+||+||+..+.+.+++++++|||||||||. ||+|.+|++
T Consensus 1 PvIGI~~~~~~~~-~~~~~~~~~~~i~~~Yv~~i~~aG~~pv~ip~~~~~~~~~~~l~~idGlll~GG~~Di~P~~y~~~ 79 (217)
T PF07722_consen 1 PVIGITAQPSESD-SSDFPGYPRSYIAASYVKAIEAAGGRPVPIPYDADDEELDELLDRIDGLLLPGGGSDIDPALYGEE 79 (217)
T ss_dssp -EEEEE-EE-----SHHHHHC-SEEEEHHHHHHHHHTT-EEEEE-SS--HHHHHHHHHCSSEEEE---SS-T-GGGGT--
T ss_pred CEEEEeCCccccc-cCCcCchhHHHHhHHHHHHHHHcCCEEEEEccCCCHHHHHHHHhhcCEEEEcCCccchhHhhcCCc
Confidence 8999999986422 2224456788999999999999999999999998999999999999999999999 999999965
Q ss_pred ----------HHHHHHHHHHHHhCCCC-cceEee----------CCcccccccc
Q 028817 162 ----------VEKIFKHEAIYERKKQS-LVHGIT----------GDVVQKDYYT 194 (203)
Q Consensus 162 ----------~~~I~~~AL~~n~~g~~-PV~Gic----------~~~~~~~~~~ 194 (203)
+|++||++|.+++.++. |||||| ||++-||+..
T Consensus 80 ~~~~~~~~~~~rd~~e~~l~~~a~~~~~PilGICrG~Q~lnv~~GGtl~q~~~~ 133 (217)
T PF07722_consen 80 PSPESGYIDPERDIFELALIRNALGRGKPILGICRGMQLLNVAFGGTLYQDIPD 133 (217)
T ss_dssp -BTTSHHHHHHHHHHHHHHHHHHCCTT--EEEETHHHHHHHHHCCSSEESCCCC
T ss_pred ccccCCCcCHHHHHHHHHHHHHHHhcCCCEEEEcHHHHHHHHHhCCCceeeccc
Confidence 69999999999999999 999999 7888888875
No 3
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=99.87 E-value=3.9e-22 Score=174.35 Aligned_cols=117 Identities=26% Similarity=0.325 Sum_probs=102.4
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChH
Q 028817 81 NNRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQ 160 (203)
Q Consensus 81 ~~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~ 160 (203)
++||||||+++......+ ++++.++|++..|++++.+||+.|++||...+.+.+.++++++|||+||||+||+|.+|+
T Consensus 1 ~~kpvIGIt~~~~~~~~~--~~~~~~~~~~~~yv~ai~~aGg~pillP~~~d~~~~~~~l~~iDgliltGg~nV~P~~YG 78 (243)
T COG2071 1 MSKPVIGITADLIQEIVG--FDGNPWSYLPYDYVDAIIKAGGIPILLPALEDPEDARQYLDLIDGLILTGGSNVDPSLYG 78 (243)
T ss_pred CCCCEEEEecchhccccc--cCCccHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHhhccEEEecCCCcCCHHHcC
Confidence 579999999998653322 677899999999999999999999999987789999999999999999999999999996
Q ss_pred H-----------HHHHHHHHHHHHhCCCC-cceEee----------CCccccccccccccc
Q 028817 161 I-----------VEKIFKHEAIYERKKQS-LVHGIT----------GDVVQKDYYTWPYHF 199 (203)
Q Consensus 161 ~-----------~~~I~~~AL~~n~~g~~-PV~Gic----------~~~~~~~~~~~~~~~ 199 (203)
+ +|+.|+++|-+..-... ||+||| ||||-||++--+.|.
T Consensus 79 ee~~~~~~~~~p~RD~~E~aLi~~ALe~~iPILgICRG~QllNVa~GGtL~q~i~~~~~~~ 139 (243)
T COG2071 79 EEPSEKDGPYDPERDAFELALIRAALERGIPILGICRGLQLLNVALGGTLYQDISEQPGHI 139 (243)
T ss_pred CCCCcccCCCCccccHHHHHHHHHHHHcCCCEEEEccchHHHHHHhcCeeehhhhcccccc
Confidence 4 68899998887777776 999999 788999998777653
No 4
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=99.78 E-value=1.3e-18 Score=151.64 Aligned_cols=110 Identities=16% Similarity=0.234 Sum_probs=87.1
Q ss_pred CCCCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCC-CHHHHHHHHHhcCEEEeCCC-CCCCCc
Q 028817 80 LNNRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNE-PEEILFEKLKLVNGVLLTGG-WAKKGL 157 (203)
Q Consensus 80 ~~~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~-~~e~l~~~Ld~VDGVLLTGG-~DVdP~ 157 (203)
.|+||+|||+++.... .+...+++.+.|+++|+++|++||+||... +.+.++++++.+|||||+|| .||+|.
T Consensus 4 ~m~~P~Igi~~~~~~~------~~~~~~~~~~~y~~~i~~aGg~pv~lp~~~~~~~~~~~~l~~~DGlil~GG~~dv~P~ 77 (254)
T PRK11366 4 IMNNPVIGVVMCRNRL------KGHATQTLQEKYLNAIIHAGGLPIALPHALAEPSLLEQLLPKLDGIYLPGSPSNVQPH 77 (254)
T ss_pred CCCCCEEEEeCCCccc------CcchHHHHHHHHHHHHHHCCCEEEEecCCCCCHHHHHHHHHhCCEEEeCCCCCCcCHh
Confidence 3579999999875321 123467799999999999999999999754 45778899999999999998 599998
Q ss_pred ChHH---------HHHHHHHHHHHHhCCC-CcceEee----------CCccccccccc
Q 028817 158 YFQI---------VEKIFKHEAIYERKKQ-SLVHGIT----------GDVVQKDYYTW 195 (203)
Q Consensus 158 yY~~---------~~~I~~~AL~~n~~g~-~PV~Gic----------~~~~~~~~~~~ 195 (203)
+|++ .|+.+++++-+..... .|||||| ||+|-||+..+
T Consensus 78 ~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Qllnva~GGtl~~~~~~~ 135 (254)
T PRK11366 78 LYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQELVVATGGSLHRKLCEQ 135 (254)
T ss_pred hcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHHhCCeEeeccccc
Confidence 8843 4667777777775444 5999999 78899987543
No 5
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.74 E-value=7.9e-18 Score=148.51 Aligned_cols=98 Identities=42% Similarity=0.559 Sum_probs=84.3
Q ss_pred EEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCC-CCCC-cChHHHH
Q 028817 86 IGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGW-AKKG-LYFQIVE 163 (203)
Q Consensus 86 IGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~-DVdP-~yY~~~~ 163 (203)
|||++++.... ......++|+.++||++|+++|+++++|+.+.+.+.++++|+.+|||||+||. |+++ .+.++++
T Consensus 1 igil~~~~~~~---~~~~~~~~yi~~~Yv~~l~~aG~~vvpi~~~~~~~~l~~~l~~~dG~l~~Gg~~~~~~~~~~~~~~ 77 (273)
T cd01747 1 IGILTQPVDGA---GSNKTGHSYIAASYVKFLESAGARVVPIWINESEEYYDKLFKSINGILFPGGAVDIDTSGYARTAK 77 (273)
T ss_pred CeEEeeecCcc---ccccchhHHHHHHHHHHHHHCCCeEEEEEeCCcHHHHHHHHhhCCEEEECCCCCcCCccccchHHH
Confidence 79999987542 23346789999999999999999988888876678899999999999999996 7764 4557789
Q ss_pred HHHHHHHHHHhCCCC-cceEeeCC
Q 028817 164 KIFKHEAIYERKKQS-LVHGITGD 186 (203)
Q Consensus 164 ~I~~~AL~~n~~g~~-PV~Gic~~ 186 (203)
.|+++|++.|++|++ ||||||=|
T Consensus 78 ~l~~~a~~~~~~g~~~Pv~GiClG 101 (273)
T cd01747 78 IIYNLALERNDAGDYFPVWGTCLG 101 (273)
T ss_pred HHHHHHHHhhhcCCCCcEEEEcHH
Confidence 999999999999998 99999955
No 6
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.35 E-value=4e-12 Score=105.77 Aligned_cols=110 Identities=25% Similarity=0.332 Sum_probs=78.9
Q ss_pred EEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChH-----
Q 028817 86 IGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQ----- 160 (203)
Q Consensus 86 IGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~----- 160 (203)
|||+++...... .....+++..+|+++++++|+.++++|...+.+.+++.++.+|||+|+||.+..|..|+
T Consensus 1 ~gi~~~~~~~~~----~~~~~~~~~~~~~~~l~~~G~~~~iv~~~~~~~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~ 76 (189)
T cd01745 1 IGITARLREEEG----GYERRDYLNQYYVDAVRKAGGLPVLLPPVDDEEDLEQYLELLDGLLLTGGGDVDPPLYGEEPHP 76 (189)
T ss_pred CEEcCccccccC----ccHHHHHHHHHHHHHHHHCCCEEEEeCCCCChHHHHHHHhhCCEEEECCCCCCChhhcCCCCCc
Confidence 688888654321 11237889999999999999999999998777777888999999999999987776542
Q ss_pred ------HHHHHHHHHHHHHh-CCCCcceEee----------CCccccccccccccc
Q 028817 161 ------IVEKIFKHEAIYER-KKQSLVHGIT----------GDVVQKDYYTWPYHF 199 (203)
Q Consensus 161 ------~~~~I~~~AL~~n~-~g~~PV~Gic----------~~~~~~~~~~~~~~~ 199 (203)
..++.++..+.+.. +.+.||+||| ||+|-|+...|.||.
T Consensus 77 ~~~~~~~~r~~~~~~~~~~~~~~~~PilgiC~G~Q~l~~~~Gg~v~~~~~v~~~H~ 132 (189)
T cd01745 77 ELGPIDPERDAFELALLRAALERGKPILGICRGMQLLNVALGGTLYQDIRVNSLHH 132 (189)
T ss_pred ccCCCChhHHHHHHHHHHHHHHCCCCEEEEcchHHHHHHHhCCeEEcCCceechHH
Confidence 34444433333222 2346999999 667766656666663
No 7
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=98.61 E-value=1e-07 Score=78.49 Aligned_cols=68 Identities=16% Similarity=0.139 Sum_probs=51.7
Q ss_pred HHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 112 SYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 112 sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
.|+++++++|+.+++++++.+.+++ ....+|||+|+||.. +|..+..+..+++++++++ .||+|||-|
T Consensus 11 ~~~~~l~~~G~~~~~~~~~~~~~~~--~~~~~dgiil~GG~~-~~~~~~~~~~~~~~~~~~~----~PvlGIC~G 78 (178)
T cd01744 11 NILRELLKRGCEVTVVPYNTDAEEI--LKLDPDGIFLSNGPG-DPALLDEAIKTVRKLLGKK----IPIFGICLG 78 (178)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHH--hhcCCCEEEECCCCC-ChhHhHHHHHHHHHHHhCC----CCEEEECHH
Confidence 5899999999999999987654433 235799999999963 3445566777777777654 799999943
No 8
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=98.41 E-value=5.8e-07 Score=82.92 Aligned_cols=69 Identities=14% Similarity=0.196 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEee
Q 028817 109 IAASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGIT 184 (203)
Q Consensus 109 I~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic 184 (203)
+..+|+++++++|+.++++|++.+.+++.++ .+|||+|+||.. +|..+..+..+++++++. +.||||||
T Consensus 187 ~k~nivr~L~~~G~~v~vvp~~~~~~~i~~~--~~DGIvLSgGPg-dp~~~~~~~~~i~~~~~~----~~PilGIC 255 (360)
T PRK12564 187 VKRNILRELAERGCRVTVVPATTTAEEILAL--NPDGVFLSNGPG-DPAALDYAIEMIRELLEK----KIPIFGIC 255 (360)
T ss_pred cHHHHHHHHHHCCCEEEEEeCCCCHHHHHhc--CCCEEEEeCCCC-ChHHHHHHHHHHHHHHHc----CCeEEEEC
Confidence 3467999999999999999987655544322 699999999963 455566666777777653 38999999
No 9
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=98.36 E-value=1.2e-06 Score=74.85 Aligned_cols=71 Identities=14% Similarity=0.076 Sum_probs=51.6
Q ss_pred HHHHHHHHHCCCeEEEeecCCC-HHHHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 111 ASYVKFVESAGARVIPLIYNEP-EEILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~-~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
..+++++++.|..++++++..+ .++..++++.+|||+|+||.- +|...+.+..+++.+++.+ .||+|||-|
T Consensus 14 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~-~~~~~~~~~~~i~~~~~~~----~PiLGIC~G 85 (214)
T PRK07765 14 FNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPG-TPERAGASIDMVRACAAAG----TPLLGVCLG 85 (214)
T ss_pred HHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCC-ChhhcchHHHHHHHHHhCC----CCEEEEccC
Confidence 3688899999999999998753 234556678899999999973 3554444555556655433 799999943
No 10
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.22 E-value=3.8e-06 Score=70.31 Aligned_cols=78 Identities=19% Similarity=0.265 Sum_probs=50.2
Q ss_pred CEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHH--
Q 028817 84 PVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQI-- 161 (203)
Q Consensus 84 PVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~-- 161 (203)
+.|+|....++ ..+++++++++|+.++.++. .+ -++.+|||+|+||..- -++.
T Consensus 2 m~~~i~~~~g~---------------~~~~~~~l~~~g~~~~~~~~---~~----~l~~~dgiii~GG~~~---~~~~~~ 56 (189)
T PRK13525 2 MKIGVLALQGA---------------VREHLAALEALGAEAVEVRR---PE----DLDEIDGLILPGGEST---TMGKLL 56 (189)
T ss_pred CEEEEEEcccC---------------HHHHHHHHHHCCCEEEEeCC---hh----HhccCCEEEECCCChH---HHHHHH
Confidence 46777766543 23556889999999999973 22 3678999999999641 1222
Q ss_pred -HHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 162 -VEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 162 -~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
...+.+...+.. +.+.||+|||.|-
T Consensus 57 ~~~~~~~~i~~~~-~~g~PilGIC~G~ 82 (189)
T PRK13525 57 RDFGLLEPLREFI-ASGLPVFGTCAGM 82 (189)
T ss_pred HhccHHHHHHHHH-HCCCeEEEECHHH
Confidence 222223333333 3335999999985
No 11
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=98.20 E-value=3.3e-06 Score=68.69 Aligned_cols=67 Identities=22% Similarity=0.099 Sum_probs=43.7
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCC-CCCcChHHHHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWA-KKGLYFQIVEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~D-VdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
..+.++++++|+.++++++..+.+ +..++.+|||+|+||.. +.-.. ...+.+..++. ..||||||-|
T Consensus 12 ~~~~~~l~~~G~~~~~~~~~~~~~--~~~~~~~dgvIl~Gg~~~~~~~~---~~~~~~~~~~~----~~PilGIC~G 79 (181)
T cd01742 12 HLIARRVRELGVYSEILPNTTPLE--EIKLKNPKGIILSGGPSSVYEED---APRVDPEIFEL----GVPVLGICYG 79 (181)
T ss_pred HHHHHHHHhcCceEEEecCCCChh--hhcccCCCEEEECCCcccccccc---cchhhHHHHhc----CCCEEEEcHH
Confidence 345677888999999999876544 33578999999999964 21110 11222333322 4599999954
No 12
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=98.14 E-value=4.3e-06 Score=70.31 Aligned_cols=76 Identities=17% Similarity=0.283 Sum_probs=47.7
Q ss_pred chhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCC-CCCcChHHHHHHHHHHHHHHhCCCCcceEee
Q 028817 106 ASYIAASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWA-KKGLYFQIVEKIFKHEAIYERKKQSLVHGIT 184 (203)
Q Consensus 106 ~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~D-VdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic 184 (203)
.++.-+..+++++++|+.++.+....+.+ +..+|+|+|+||.+ +.-......+.+.+...+..++| .||+|||
T Consensus 9 F~f~y~e~~~~l~~~G~~v~~~s~~~~~~-----l~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g-~pilgIC 82 (198)
T cd03130 9 FNFYYPENLELLEAAGAELVPFSPLKDEE-----LPDADGLYLGGGYPELFAEELSANQSMRESIRAFAESG-GPIYAEC 82 (198)
T ss_pred cccccHHHHHHHHHCCCEEEEECCCCCCC-----CCCCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcC-CCEEEEc
Confidence 44555667799999999998886532222 34499999999963 22122222233444444444333 5999999
Q ss_pred CCc
Q 028817 185 GDV 187 (203)
Q Consensus 185 ~~~ 187 (203)
||-
T Consensus 83 gG~ 85 (198)
T cd03130 83 GGL 85 (198)
T ss_pred ccH
Confidence 984
No 13
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=98.12 E-value=7.5e-06 Score=75.64 Aligned_cols=65 Identities=17% Similarity=0.231 Sum_probs=48.2
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHHHHHHHHHh-cCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEee
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEEILFEKLKL-VNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGIT 184 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~-VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic 184 (203)
.++++++++.|+.++++|++.+.+ ++.+. .|||+|+||.. +|.....+..+.+++++ +.||+|||
T Consensus 185 ~ni~~~L~~~G~~v~vvp~~~~~~---~i~~~~pDGIiLSgGPg-dp~~~~~~i~~i~~~~~-----~~PILGIC 250 (358)
T TIGR01368 185 QNILRRLVKRGCEVTVVPYDTDAE---EIKKYNPDGIFLSNGPG-DPAAVEPAIETIRKLLE-----KIPIFGIC 250 (358)
T ss_pred HHHHHHHHHCCCEEEEEcCCCCHH---HHHhhCCCEEEECCCCC-CHHHHHHHHHHHHHHHc-----CCCEEEEC
Confidence 579999999999999999876543 34443 59999999963 35555555556666652 57999999
No 14
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=98.08 E-value=1.3e-05 Score=71.01 Aligned_cols=92 Identities=11% Similarity=0.125 Sum_probs=57.5
Q ss_pred CCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCC-CCCcChH
Q 028817 82 NRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWA-KKGLYFQ 160 (203)
Q Consensus 82 ~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~D-VdP~yY~ 160 (203)
+++.|+|+.-++..+ . ...+++++++|+.+.+++..... +....++.+|||+|+||.. -+...++
T Consensus 2 ~~~kvaVl~~pG~n~----------d---~e~~~Al~~aG~~v~~v~~~~~~-~~~~~l~~~DgLvipGGfs~gD~l~~g 67 (261)
T PRK01175 2 ESIRVAVLRMEGTNC----------E---DETVKAFRRLGVEPEYVHINDLA-AERKSVSDYDCLVIPGGFSAGDYIRAG 67 (261)
T ss_pred CCCEEEEEeCCCCCC----------H---HHHHHHHHHCCCcEEEEeecccc-ccccchhhCCEEEECCCCCcccccccc
Confidence 457889988765422 1 24468899999999998864321 2223489999999999953 2333333
Q ss_pred H-----HHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 161 I-----VEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 161 ~-----~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
. .+.....+++...+.+.||+|||-|.
T Consensus 68 ~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~ 99 (261)
T PRK01175 68 AIFAARLKAVLRKDIEEFIDEGYPIIGICNGF 99 (261)
T ss_pred hhhHHHHHHHHHHHHHHHHHCCCeEEEECHHH
Confidence 2 11122233333334456999999875
No 15
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=98.01 E-value=8.2e-06 Score=66.84 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=49.1
Q ss_pred hHHHHHHHHHCCC---eEEEeecCCCHHHHHHHHHhcCEEEeCCCCC-C---CCcChHHHHHHHHHHHHHHhCCCCcceE
Q 028817 110 AASYVKFVESAGA---RVIPLIYNEPEEILFEKLKLVNGVLLTGGWA-K---KGLYFQIVEKIFKHEAIYERKKQSLVHG 182 (203)
Q Consensus 110 ~~sYVkaVe~AGA---~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~D-V---dP~yY~~~~~I~~~AL~~n~~g~~PV~G 182 (203)
...|.++++++|+ +..++.+..... ...++.+|||+|+||.. . +..+.....++++.+++.+ .||+|
T Consensus 13 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~--~~~~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~----~pilg 86 (188)
T cd01741 13 PGLFEDLLREAGAETIEIDVVDVYAGEL--LPDLDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAAG----KPVLG 86 (188)
T ss_pred cchHHHHHHhcCCCCceEEEEecCCCCC--CCCcccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHCC----CCEEE
Confidence 6788899999994 666666544332 23478999999999974 3 2233355666666665433 79999
Q ss_pred eeCC
Q 028817 183 ITGD 186 (203)
Q Consensus 183 ic~~ 186 (203)
||-|
T Consensus 87 iC~G 90 (188)
T cd01741 87 ICLG 90 (188)
T ss_pred ECcc
Confidence 9965
No 16
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=97.98 E-value=1.3e-05 Score=65.39 Aligned_cols=71 Identities=17% Similarity=0.217 Sum_probs=53.6
Q ss_pred hHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCC-CCCcChHHHHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 110 AASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWA-KKGLYFQIVEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 110 ~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~D-VdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
..+.++++++.|...-++++..+.+...+.++..|||+++||.. +.- .+....+.+++++ .+.||+|||.|
T Consensus 10 ~~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~d~iii~Gg~~~~~d--~~~~~~~i~~~~~----~~~PilGIC~G 81 (192)
T PF00117_consen 10 THSLVRALRELGIDVEVVRVDSDFEEPLEDLDDYDGIIISGGPGSPYD--IEGLIELIREARE----RKIPILGICLG 81 (192)
T ss_dssp HHHHHHHHHHTTEEEEEEETTGGHHHHHHHTTTSSEEEEECESSSTTS--HHHHHHHHHHHHH----TTSEEEEETHH
T ss_pred HHHHHHHHHHCCCeEEEEECCCchhhhhhhhcCCCEEEECCcCCcccc--ccccccccccccc----cceEEEEEeeh
Confidence 36677889999988888887654444322689999999999963 322 7777777777777 34799999977
No 17
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=97.97 E-value=2e-05 Score=64.74 Aligned_cols=69 Identities=14% Similarity=0.066 Sum_probs=44.5
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
..+++++++.|.++.++++....+.+.+ ++.+|||+++||..- +..-+ .++..++.-. ...||||||-|
T Consensus 12 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~-~~~~dgvil~gG~~~-~~~~~----~~~~i~~~~~-~~~PvlGIC~G 80 (184)
T cd01743 12 YNLVQYLRELGAEVVVVRNDEITLEELE-LLNPDAIVISPGPGH-PEDAG----ISLEIIRALA-GKVPILGVCLG 80 (184)
T ss_pred HHHHHHHHHcCCceEEEeCCCCCHHHHh-hcCCCEEEECCCCCC-cccch----hHHHHHHHHh-cCCCEEEECHh
Confidence 4567889999999999999766554433 478999999888641 11111 2222222211 23699999955
No 18
>PRK00758 GMP synthase subunit A; Validated
Probab=97.97 E-value=1.5e-05 Score=65.54 Aligned_cols=62 Identities=16% Similarity=0.133 Sum_probs=40.8
Q ss_pred HHHHHHHHCCCeEEEeecCCCHHHHHHHHHhc-CEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 112 SYVKFVESAGARVIPLIYNEPEEILFEKLKLV-NGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 112 sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~V-DGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
..++++++.|..+.+++...+.++ ++.. |||+++||.+++ .+...+ +... +.+.||+|||-|
T Consensus 14 ~i~~~l~~~g~~~~~~~~~~~~~~----l~~~~dgivi~Gg~~~~--~~~~~~---~~l~----~~~~PilGIC~G 76 (184)
T PRK00758 14 LIHRTLRYLGVDAKIIPNTTPVEE----IKAFEDGLILSGGPDIE--RAGNCP---EYLK----ELDVPILGICLG 76 (184)
T ss_pred HHHHHHHHcCCcEEEEECCCCHHH----HhhcCCEEEECCCCChh--hccccH---HHHH----hCCCCEEEEeHH
Confidence 346678889999999997655443 3455 999999998532 222222 2222 224799999966
No 19
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=97.96 E-value=1.7e-05 Score=65.54 Aligned_cols=67 Identities=19% Similarity=0.151 Sum_probs=44.0
Q ss_pred HHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 112 SYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 112 sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
+-.+++++.|+.+.+++++.+.+++.++ + .|||+|+||..- + +-+....+.+++++. +.||||||-|
T Consensus 13 ~l~~~l~~~g~~~~~~~~~~~~~~~~~~-~-~~glii~Gg~~~-~-~~~~~~~~i~~~~~~----~~PilGIC~G 79 (188)
T TIGR00888 13 LIARRLRELGVYSELVPNTTPLEEIREK-N-PKGIILSGGPSS-V-YAENAPRADEKIFEL----GVPVLGICYG 79 (188)
T ss_pred HHHHHHHHcCCEEEEEeCCCCHHHHhhc-C-CCEEEECCCCCC-c-CcCCchHHHHHHHhC----CCCEEEECHH
Confidence 3446788899999999987766655442 2 569999999741 1 111223445555433 3599999965
No 20
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=97.95 E-value=2e-05 Score=72.76 Aligned_cols=70 Identities=19% Similarity=0.154 Sum_probs=47.5
Q ss_pred hhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 109 IAASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 109 I~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
+..++++++++.|+.++++|++.+.+++.+ ..+|||+|+||.. +|.-......+++.++ . +.||+|||=|
T Consensus 177 ~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~--~~~DGIiLsgGPg-dp~~~~~~~~~i~~~~---~--~~PvlGIClG 246 (354)
T PRK12838 177 YKKSILRSLSKRGCKVTVLPYDTSLEEIKN--LNPDGIVLSNGPG-DPKELQPYLPEIKKLI---S--SYPILGICLG 246 (354)
T ss_pred HHHHHHHHHHHCCCeEEEEECCCCHHHHhh--cCCCEEEEcCCCC-ChHHhHHHHHHHHHHh---c--CCCEEEECHH
Confidence 458899999999999999998765554433 3799999999984 3432222222222222 2 2899999944
No 21
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=97.82 E-value=1.1e-05 Score=66.80 Aligned_cols=66 Identities=18% Similarity=0.208 Sum_probs=41.3
Q ss_pred HHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 113 YVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 113 YVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
.++++++.|+..+.+... ++ ++.+|||+|+||.+-.-........+.+..++..+ ...||||||+|
T Consensus 13 ~~~~l~~~g~~v~~v~~~---~~----l~~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~~~~-~g~PvlGiC~G 78 (183)
T cd01749 13 HIRALERLGVEVIEVRTP---ED----LEGIDGLIIPGGESTTIGKLLRRTGLLDPLREFIR-AGKPVFGTCAG 78 (183)
T ss_pred HHHHHHHCCCeEEEECCH---HH----hccCCEEEECCchHHHHHHHHHhCCHHHHHHHHHH-cCCeEEEECHH
Confidence 338899999999888752 21 78899999999975100001111223333333332 24699999987
No 22
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=97.82 E-value=6.3e-05 Score=66.60 Aligned_cols=77 Identities=19% Similarity=0.339 Sum_probs=50.1
Q ss_pred EEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHHH--
Q 028817 85 VIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQIV-- 162 (203)
Q Consensus 85 VIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~-- 162 (203)
.|||++-.+. .++-+++++++|+.++.+.. .+ -|+.+|||+||||.+- -+...
T Consensus 3 ~igVLa~qG~---------------~~e~~~aL~~lG~ev~~v~~---~~----~L~~~DgLILPGGfs~---~~~~L~~ 57 (248)
T PLN02832 3 AIGVLALQGS---------------FNEHIAALRRLGVEAVEVRK---PE----QLEGVSGLIIPGGEST---TMAKLAE 57 (248)
T ss_pred EEEEEeCCCc---------------hHHHHHHHHHCCCcEEEeCC---HH----HhccCCEEEeCCCHHH---HHHHHHh
Confidence 5899888653 13346889999999988863 22 3678999999998641 11111
Q ss_pred -HHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 163 -EKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 163 -~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
..+.+...+. .+...||||||.|-
T Consensus 58 ~~gl~~~I~~~-v~~g~PvLGiC~Gm 82 (248)
T PLN02832 58 RHNLFPALREF-VKSGKPVWGTCAGL 82 (248)
T ss_pred hcchHHHHHHH-HHcCCCEEEEChhH
Confidence 1244444443 33445999999984
No 23
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.80 E-value=3.3e-05 Score=64.84 Aligned_cols=67 Identities=22% Similarity=0.165 Sum_probs=41.8
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
..|.++++++|+.+.++. +.+ -++.+|||+|+||.+- +..+...+.+.+...+.. +.+.||+|||+|
T Consensus 14 ~~~~~~l~~~G~~~~~~~---~~~----~~~~~d~iii~G~~~~-~~~~~~~~~~~~~i~~~~-~~~~PilgIC~G 80 (200)
T PRK13143 14 RSVSKALERAGAEVVITS---DPE----EILDADGIVLPGVGAF-GAAMENLSPLRDVILEAA-RSGKPFLGICLG 80 (200)
T ss_pred HHHHHHHHHCCCeEEEEC---CHH----HHccCCEEEECCCCCH-HHHHHHHHHHHHHHHHHH-HcCCCEEEECHH
Confidence 778899999999988885 222 3578999999997531 111121222222222222 233699999997
No 24
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=97.78 E-value=7.9e-05 Score=64.01 Aligned_cols=70 Identities=20% Similarity=0.243 Sum_probs=45.2
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCC----CcChHHHHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKK----GLYFQIVEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVd----P~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
..++++++++|+.+++++.... + ++.+|||+|+||.+-. .........+.+...+..+ ...||+|||.|
T Consensus 15 ~~~~~al~~~G~~~~~i~~~~~-~-----l~~~d~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~~-~g~pvlgIC~G 87 (227)
T TIGR01737 15 RDTVYALRLLGVDAEIVWYEDG-S-----LPDYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAE-KGVPVLGICNG 87 (227)
T ss_pred HHHHHHHHHCCCeEEEEecCCC-C-----CCCCCEEEECCCCcccccccccchhcchHHHHHHHHHHH-cCCEEEEECHH
Confidence 4567899999999999986432 1 5789999999996421 1111122234444433332 33599999998
Q ss_pred c
Q 028817 187 V 187 (203)
Q Consensus 187 ~ 187 (203)
.
T Consensus 88 ~ 88 (227)
T TIGR01737 88 F 88 (227)
T ss_pred H
Confidence 5
No 25
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=97.77 E-value=1.3e-05 Score=68.60 Aligned_cols=71 Identities=20% Similarity=0.293 Sum_probs=46.1
Q ss_pred hHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 110 AASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 110 ~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
.+..++.++++|+.++.+.. .++ |+.+|||++|||..=.=...-....+++...++-.+|+.||||+|-|-
T Consensus 8 ~~EH~~~l~~lg~~~~~Vr~--~~d-----L~~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGl 78 (188)
T PF01174_consen 8 FREHIRMLERLGAEVVEVRT--PED-----LEGLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGL 78 (188)
T ss_dssp HHHHHHHHHHTTSEEEEE-S--GGG-----GTT-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHH
T ss_pred hHHHHHHHHHcCCCeEEeCC--HHH-----HccCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHH
Confidence 35566889999999988863 222 577999999999851111111234677777788888889999999884
No 26
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.76 E-value=2.1e-05 Score=66.72 Aligned_cols=71 Identities=17% Similarity=0.027 Sum_probs=40.5
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChH-HHHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQ-IVEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~-~~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
.++++++++.|+++ .+....+.++ ++.+|||+|||+..-.-..+. ....+.+..++.-.+...||||||.|
T Consensus 15 ~s~~~al~~~g~~~-~v~~~~~~~~----l~~~d~lIlpG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~PvlGiC~G 86 (209)
T PRK13146 15 RSAAKALERAGAGA-DVVVTADPDA----VAAADRVVLPGVGAFADCMRGLRAVGLGEAVIEAVLAAGRPFLGICVG 86 (209)
T ss_pred HHHHHHHHHcCCCc-cEEEECCHHH----hcCCCEEEECCCCcHHHHHHHHHHCCcHHHHHHHHHhCCCcEEEECHH
Confidence 77889999999842 2222334433 689999999997532111111 11112223333222334599999998
No 27
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.75 E-value=2.3e-05 Score=65.81 Aligned_cols=65 Identities=15% Similarity=0.097 Sum_probs=42.7
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCC-CCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTG-GWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTG-G~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
.+..+++++.|+.+.++. +.+ -++.+|||+||| |...+...+-+++.+++.+++. +.||||||.|
T Consensus 14 ~s~~~~l~~~g~~~~~v~---~~~----~~~~~d~iIlPG~G~~~~~~~~l~~~~l~~~i~~~----~~PilGIClG 79 (196)
T PRK13170 14 SSVKFAIERLGYEPVVSR---DPD----VILAADKLFLPGVGTAQAAMDQLRERELIDLIKAC----TQPVLGICLG 79 (196)
T ss_pred HHHHHHHHHCCCeEEEEC---CHH----HhCCCCEEEECCCCchHHHHHHHHHcChHHHHHHc----CCCEEEECHH
Confidence 445568889999888874 333 256789999999 4433322222334556666553 3699999988
No 28
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=97.73 E-value=8.6e-05 Score=64.67 Aligned_cols=71 Identities=17% Similarity=0.123 Sum_probs=39.8
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHH---HHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEE---ILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e---~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
.....+....++.+.++..+.+.. ..++.|+.+|||+|+||..... . .....+.+++++ .+.||||||-|-
T Consensus 21 ~~L~~a~~~~~~~v~~~~i~~~~~~~~~~~~~l~~~dgivl~GG~~~~~-~-~~~~~~i~~~~~----~~~PvlGIClG~ 94 (235)
T cd01746 21 EALKHAGIALGVKLEIKWIDSEDLEEENAEEALKGADGILVPGGFGIRG-V-EGKILAIKYARE----NNIPFLGICLGM 94 (235)
T ss_pred HHHHHHHHHcCCeeEEEEeChhhcCccchhhhhccCCEEEECCCCCCcc-h-hhHHHHHHHHHH----CCceEEEEEhHH
Confidence 333334444455554444332221 1246789999999999985321 1 222344444443 347999999763
No 29
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.72 E-value=6e-05 Score=63.25 Aligned_cols=68 Identities=18% Similarity=-0.001 Sum_probs=41.3
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcC-hHHHHHHHHHHHHHH-hCCCCcceEeeCC
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLY-FQIVEKIFKHEAIYE-RKKQSLVHGITGD 186 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~y-Y~~~~~I~~~AL~~n-~~g~~PV~Gic~~ 186 (203)
.+-++++++.|+.++++. +.++ ++.+|||+|||+....... +-....+ +.++... .+...||||||.|
T Consensus 13 ~~v~~~l~~~g~~~~~~~---~~~~----l~~~d~lilPG~g~~~~~~~~l~~~~~-~~~l~~~~~~~~~pvlGiC~G 82 (201)
T PRK13152 13 NSVAKAFEKIGAINFIAK---NPKD----LQKADKLLLPGVGSFKEAMKNLKELGF-IEALKEQVLVQKKPILGICLG 82 (201)
T ss_pred HHHHHHHHHCCCeEEEEC---CHHH----HcCCCEEEECCCCchHHHHHHHHHcCc-HHHHHHHHHhCCCcEEEECHh
Confidence 455677888998877765 3332 4679999999998643221 1111112 2333332 2344799999976
No 30
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=97.71 E-value=0.00012 Score=60.86 Aligned_cols=70 Identities=9% Similarity=0.159 Sum_probs=45.5
Q ss_pred hhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 107 SYIAASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 107 syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
+|... -++++++.|..+.++...... .+.++.+|||+++||... |..|.....+. +. .+++.||||||=|
T Consensus 12 sf~~~-i~~~l~~~g~~~~v~~~~~~~---~~~l~~~d~iIi~gGp~~-~~~~~~~~~~i----~~-~~~~~PiLGIClG 81 (190)
T PRK06895 12 SFTFN-LVDLIRKLGVPMQVVNVEDLD---LDEVENFSHILISPGPDV-PRAYPQLFAML----ER-YHQHKSILGVCLG 81 (190)
T ss_pred chHHH-HHHHHHHcCCcEEEEECCccC---hhHhccCCEEEECCCCCC-hHHhhHHHHHH----HH-hcCCCCEEEEcHH
Confidence 34444 567888899988888864311 224678999999999874 44454433332 22 3456799999943
No 31
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=97.68 E-value=7e-05 Score=64.12 Aligned_cols=69 Identities=14% Similarity=0.080 Sum_probs=44.7
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChH-HHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQ-IVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~-~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
.+.+++++++|+.++++.. .+ .++.+|+|+|+|+.+.+..... +.+.+++..++.- +...||||||+|-
T Consensus 15 ~sl~~al~~~g~~v~vv~~---~~----~l~~~d~iIlPG~g~~~~~~~~l~~~gl~~~i~~~~-~~~~pvlGIClG~ 84 (210)
T CHL00188 15 HSVSRAIQQAGQQPCIINS---ES----ELAQVHALVLPGVGSFDLAMKKLEKKGLITPIKKWI-AEGNPFIGICLGL 84 (210)
T ss_pred HHHHHHHHHcCCcEEEEcC---HH----HhhhCCEEEECCCCchHHHHHHHHHCCHHHHHHHHH-HcCCCEEEECHHH
Confidence 6678889999999998853 22 2567999999997654322111 1123444444443 3346999999984
No 32
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=97.67 E-value=0.0001 Score=68.85 Aligned_cols=67 Identities=16% Similarity=0.160 Sum_probs=46.8
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEee
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGIT 184 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic 184 (203)
...++++++.|+.++++|++.+.++++++ ..|||+|+||.. +|..+.......+++++ .+.||+|||
T Consensus 204 ~ni~~~L~~~G~~v~vvp~~~~~~~i~~~--~~dgIilSgGPg-~p~~~~~~i~~i~~~~~----~~~PilGIC 270 (382)
T CHL00197 204 YNILRRLKSFGCSITVVPATSPYQDILSY--QPDGILLSNGPG-DPSAIHYGIKTVKKLLK----YNIPIFGIC 270 (382)
T ss_pred HHHHHHHHHCCCeEEEEcCCCCHHHHhcc--CCCEEEEcCCCC-ChhHHHHHHHHHHHHHh----CCCCEEEEc
Confidence 34678899999999999998766655432 689999999963 24434333334455552 347999999
No 33
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=97.67 E-value=8.6e-05 Score=64.23 Aligned_cols=75 Identities=19% Similarity=0.214 Sum_probs=46.9
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCC----CCcChHHHHH-HHHHHHHHHhCCCCcceEeeC
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAK----KGLYFQIVEK-IFKHEAIYERKKQSLVHGITG 185 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DV----dP~yY~~~~~-I~~~AL~~n~~g~~PV~Gic~ 185 (203)
.+++++++++|+.+.+++..... .-+..++.+|||+|+||..- .....-..+. +.+...+..+ .+.||+|||.
T Consensus 13 ~~~~~al~~aG~~v~~v~~~~~~-~~~~~l~~~d~liipGG~~~~d~l~~~~~~~~~~~~~~~l~~~~~-~g~pvlGIC~ 90 (238)
T cd01740 13 RDMAYAFELAGFEAEDVWHNDLL-AGRKDLDDYDGVVLPGGFSYGDYLRAGAIAAASPLLMEEVKEFAE-RGGLVLGICN 90 (238)
T ss_pred HHHHHHHHHcCCCEEEEeccCCc-cccCCHhhCCEEEECCCCCcccccccccccccChhHHHHHHHHHh-CCCeEEEECc
Confidence 46888999999999999875421 11224788999999999531 1111001111 4444444433 3469999998
Q ss_pred Cc
Q 028817 186 DV 187 (203)
Q Consensus 186 ~~ 187 (203)
|.
T Consensus 91 G~ 92 (238)
T cd01740 91 GF 92 (238)
T ss_pred HH
Confidence 75
No 34
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=97.61 E-value=7.2e-05 Score=62.67 Aligned_cols=68 Identities=15% Similarity=0.064 Sum_probs=42.5
Q ss_pred HHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHH-HHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 112 SYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQI-VEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 112 sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~-~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
+..++++..|+.++.+....+ ++.+|+|+|+||.+.......- .+.+.+ .++...+...||+|||+|-
T Consensus 14 ~l~~~~~~~G~~~~~~~~~~~-------~~~~d~lilpGg~~~~~~~~~~~~~~~~~-~i~~~~~~g~pvlgiC~G~ 82 (194)
T cd01750 14 DLDPLAREPGVDVRYVEVPEG-------LGDADLIILPGSKDTIQDLAWLRKRGLAE-AIKNYARAGGPVLGICGGY 82 (194)
T ss_pred HHHHHHhcCCceEEEEeCCCC-------CCCCCEEEECCCcchHHHHHHHHHcCHHH-HHHHHHHCCCcEEEECHHH
Confidence 334456778999999986543 5678999999998543221111 112233 3333334445999999994
No 35
>PRK05670 anthranilate synthase component II; Provisional
Probab=97.60 E-value=0.00017 Score=59.71 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=41.6
Q ss_pred HHHHHHHHHCCCeEEEeecCC-CHHHHHHHHHhcCEEEeCCCC-CCCCcChHHHHHHHHHHHHHHhCCCCcceEeeC
Q 028817 111 ASYVKFVESAGARVIPLIYNE-PEEILFEKLKLVNGVLLTGGW-AKKGLYFQIVEKIFKHEAIYERKKQSLVHGITG 185 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~-~~e~l~~~Ld~VDGVLLTGG~-DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~ 185 (203)
...++++++.|..+.++++.. +.+.++ .++ .|||+|+||. ++ .-.+....+.+ . .+++.||+|||-
T Consensus 13 ~~i~~~l~~~g~~~~v~~~~~~~~~~~~-~~~-~dglIlsgGpg~~--~d~~~~~~~l~----~-~~~~~PvLGICl 80 (189)
T PRK05670 13 YNLVQYLGELGAEVVVYRNDEITLEEIE-ALN-PDAIVLSPGPGTP--AEAGISLELIR----E-FAGKVPILGVCL 80 (189)
T ss_pred HHHHHHHHHCCCcEEEEECCCCCHHHHH-hCC-CCEEEEcCCCCCh--HHcchHHHHHH----H-hcCCCCEEEECH
Confidence 455778888999999999864 334442 233 7999999996 43 11112222222 2 234479999993
No 36
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=97.60 E-value=0.00011 Score=69.08 Aligned_cols=87 Identities=13% Similarity=0.140 Sum_probs=55.5
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCC-CCCcChHH
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWA-KKGLYFQI 161 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~D-VdP~yY~~ 161 (203)
+..|||.-.+- ..+--...++.+++.|+.++.+....+.+ +..+|+|+|+||.. +.......
T Consensus 245 ~~~iava~d~a------------f~f~y~e~~~~L~~~g~~~~~~~~~~~~~-----l~~~D~lilpGG~~~~~~~~l~~ 307 (451)
T PRK01077 245 GVRIAVARDAA------------FNFYYPENLELLRAAGAELVFFSPLADEA-----LPDCDGLYLGGGYPELFAAELAA 307 (451)
T ss_pred CceEEEEecCc------------ccccHHHHHHHHHHCCCEEEEeCCcCCCC-----CCCCCEEEeCCCchhhHHHHHhh
Confidence 46899977651 12334566788999999999987543322 45789999999973 21111222
Q ss_pred HHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 162 VEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 162 ~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
.+.+.+...+..++| .||+|||||-
T Consensus 308 ~~~~~~~i~~~~~~g-~~i~aiCgG~ 332 (451)
T PRK01077 308 NTSMRASIRAAAAAG-KPIYAECGGL 332 (451)
T ss_pred CchhHHHHHHHHHcC-CCEEEEcHHH
Confidence 233444444444443 4999999995
No 37
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=97.55 E-value=0.0001 Score=69.36 Aligned_cols=84 Identities=18% Similarity=0.226 Sum_probs=55.7
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHH-
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQI- 161 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~- 161 (203)
+..|||.-..- ++..| +..++.+++.|+..+.+....+.+ +..+|+|+|+||. |..+..
T Consensus 244 ~~~Iava~d~a----------fnFy~--~~~~~~L~~~g~~~~~~~~~~d~~-----l~~~d~l~ipGG~---~~~~~~~ 303 (449)
T TIGR00379 244 YVRIAVAQDQA----------FNFYY--QDNLDALTHNAAELVPFSPLEDTE-----LPDVDAVYIGGGF---PELFAEE 303 (449)
T ss_pred CcEEEEEechh----------hceeH--HHHHHHHHHCCCEEEEECCccCCC-----CCCCCEEEeCCcH---HHHHHHH
Confidence 46899877641 23334 777899999999999987643332 4588999999997 333322
Q ss_pred ---HHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 162 ---VEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 162 ---~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
.+.+.+...+.-.+| .||+|||||-
T Consensus 304 l~~~~~~~~~i~~~~~~G-~pv~g~CgG~ 331 (449)
T TIGR00379 304 LSQNQALRDSIKTFIHQG-LPIYGECGGL 331 (449)
T ss_pred HHhhhHHHHHHHHHHHcC-CCEEEEcHHH
Confidence 223344444444444 5999999994
No 38
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=97.54 E-value=0.00016 Score=61.37 Aligned_cols=80 Identities=16% Similarity=0.212 Sum_probs=50.2
Q ss_pred CEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHHHH
Q 028817 84 PVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQIVE 163 (203)
Q Consensus 84 PVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~ 163 (203)
..|||++-.+. ...-.+++++.|+.++.+. +.++ ++.+|||+||||.--.=...-+..
T Consensus 3 ~~igVLalqG~---------------~~Eh~~al~~lG~~v~~v~---~~~~----l~~~D~LILPGG~~t~~~~ll~~~ 60 (179)
T PRK13526 3 QKVGVLAIQGG---------------YQKHADMFKSLGVEVKLVK---FNND----FDSIDRLVIPGGESTTLLNLLNKH 60 (179)
T ss_pred cEEEEEECCcc---------------HHHHHHHHHHcCCcEEEEC---CHHH----HhCCCEEEECCChHHHHHHHhhhc
Confidence 46899887653 1235688999999877764 3333 678899999998421101111223
Q ss_pred HHHHHHHHHHhCCCCcceEeeCCc
Q 028817 164 KIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 164 ~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
.+++...+.. ++ -||||||-|-
T Consensus 61 ~l~~~Ik~~~-~~-kpilGICaG~ 82 (179)
T PRK13526 61 QIFDKLYNFC-SS-KPVFGTCAGS 82 (179)
T ss_pred CcHHHHHHHH-cC-CcEEEEcHHH
Confidence 3455555444 23 4999999874
No 39
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.52 E-value=0.0001 Score=62.86 Aligned_cols=66 Identities=15% Similarity=0.084 Sum_probs=42.5
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChH-HHHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQ-IVEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~-~~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
.+-++++++.|+.++.+. +.++ ++.+|+|+|||+......... ..+.+.+..++ +...||+|||+|
T Consensus 13 ~s~~~al~~~g~~~~~v~---~~~~----l~~~D~lIlPG~g~~~~~~~~L~~~gl~~~i~~---~~g~PvlGIClG 79 (192)
T PRK13142 13 SNVKRAIEHLGYEVVVSN---TSKI----IDQAETIILPGVGHFKDAMSEIKRLNLNAILAK---NTDKKMIGICLG 79 (192)
T ss_pred HHHHHHHHHcCCCEEEEe---CHHH----hccCCEEEECCCCCHHHHHHHHHHCCcHHHHHH---hCCCeEEEECHH
Confidence 667788999999988875 3332 567999999999763222111 11223333333 234599999998
No 40
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.48 E-value=0.00014 Score=60.73 Aligned_cols=68 Identities=16% Similarity=0.001 Sum_probs=40.7
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcC-hHHHHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLY-FQIVEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~y-Y~~~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
.++++++++.|..+.++. +.++ ++.+|+|+++||.+-.... +-....+.+..++.- +...||||||+|
T Consensus 13 ~~~~~~l~~~g~~v~~~~---~~~~----l~~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~-~~~~PvlGiC~G 81 (199)
T PRK13181 13 RSVANALKRLGVEAVVSS---DPEE----IAGADKVILPGVGAFGQAMRSLRESGLDEALKEHV-EKKQPVLGICLG 81 (199)
T ss_pred HHHHHHHHHCCCcEEEEc---ChHH----hccCCEEEECCCCCHHHHHHHHHHCChHHHHHHHH-HCCCCEEEECHh
Confidence 556678888998887773 3332 5679999999976421111 111112333333322 344699999998
No 41
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=97.47 E-value=0.00035 Score=67.84 Aligned_cols=89 Identities=24% Similarity=0.273 Sum_probs=53.4
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCC---eEEEeecCCCHHHH---HHHHHhcCEEEeCCCCCC
Q 028817 81 NNRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGA---RVIPLIYNEPEEIL---FEKLKLVNGVLLTGGWAK 154 (203)
Q Consensus 81 ~~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA---~PV~LP~~~~~e~l---~~~Ld~VDGVLLTGG~DV 154 (203)
..+..||+.+.... ....| .+++++++.+|+ ..|.+.....++.. .++|+.+|||+|+||..-
T Consensus 287 ~~~v~IalVGKY~~---------~~daY--~SI~eAL~~ag~~~~~~V~~~~i~se~i~~~~~~~L~~~dGIiLpGG~G~ 355 (525)
T TIGR00337 287 KHEVTIGIVGKYVE---------LKDSY--LSVIEALKHAGAKLDTKVNIKWIDSEDLEEEGAEFLKGVDGILVPGGFGE 355 (525)
T ss_pred CCCcEEEEEeCCcC---------CHHHH--HHHHHHHHhCccccCCEEEEEEecHHHhhhhhhhhhcCCCEEEeCCCCCC
Confidence 34689999887532 23445 588999999986 22333322222221 235888999999999732
Q ss_pred CCcChHHHHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 155 KGLYFQIVEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 155 dP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
+..-+ .-...+++++ .+.|++|||-|
T Consensus 356 -~~~~g-~i~ai~~a~e----~~iP~LGIClG 381 (525)
T TIGR00337 356 -RGVEG-KILAIKYARE----NNIPFLGICLG 381 (525)
T ss_pred -hhhcC-hHHHHHHHHH----cCCCEEEEcHH
Confidence 11111 1123444443 34799999988
No 42
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=97.45 E-value=0.00018 Score=60.25 Aligned_cols=64 Identities=16% Similarity=0.201 Sum_probs=41.3
Q ss_pred HHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHH---HHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 113 YVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQI---VEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 113 YVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~---~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
.+++++++|+.+..+.. .+ -++.+|||+||||..- -++. ...+.+. ++.-.+.+.||+|||.|-
T Consensus 14 ~~~~l~~~g~~~~~v~~---~~----~l~~~d~liipGG~~~---~~~~l~~~~~l~~~-i~~~~~~g~pilGIC~G~ 80 (184)
T TIGR03800 14 HARALEALGVEGVEVKR---PE----QLDEIDGLIIPGGEST---TLSRLLDKYGMFEP-LRNFILSGLPVFGTCAGL 80 (184)
T ss_pred HHHHHHHCCCEEEEECC---hH----HhccCCEEEECCCCHH---HHHHHHHhccHHHH-HHHHHHcCCcEEEECHHH
Confidence 45889999999988864 22 2678999999999531 1111 1223333 333334447999999985
No 43
>PLN02347 GMP synthetase
Probab=97.44 E-value=0.00033 Score=67.93 Aligned_cols=70 Identities=17% Similarity=0.037 Sum_probs=46.3
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCC-CC-CcChHHHHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWA-KK-GLYFQIVEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~D-Vd-P~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
..-++.+++.|..+.++|++.+.+++.+. .+|||+|+||.. +. .........+++.+++ .+.||+|||-|
T Consensus 24 ~~I~r~lrelgv~~~v~p~~~~~~~i~~~--~~dgIILsGGP~sv~~~~~p~~~~~i~~~~~~----~~iPILGIClG 95 (536)
T PLN02347 24 HLITRRVRELGVYSLLLSGTASLDRIASL--NPRVVILSGGPHSVHVEGAPTVPEGFFDYCRE----RGVPVLGICYG 95 (536)
T ss_pred HHHHHHHHHCCCeEEEEECCCCHHHHhcC--CCCEEEECCCCCcccccCCchhhHHHHHHHHh----cCCcEEEECHH
Confidence 33456788899999999987665554322 689999999963 21 1121233456666643 34799999933
No 44
>PRK00074 guaA GMP synthase; Reviewed
Probab=97.44 E-value=0.00029 Score=67.55 Aligned_cols=66 Identities=18% Similarity=0.038 Sum_probs=43.6
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCC-C-CCcChHHHHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWA-K-KGLYFQIVEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~D-V-dP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
....+.|++.|+.+.++|++.+.++++++ .+|||+|+||.. + +.......+. +++ .+.||||||-|
T Consensus 17 ~li~r~lrelg~~~~v~p~~~~~~~l~~~--~~dgIIlsGGp~sv~~~~~p~~~~~----i~~----~~~PvLGIC~G 84 (511)
T PRK00074 17 QLIARRVRELGVYSEIVPYDISAEEIRAF--NPKGIILSGGPASVYEEGAPRADPE----IFE----LGVPVLGICYG 84 (511)
T ss_pred HHHHHHHHHCCCeEEEEECCCCHHHHhcc--CCCEEEECCCCcccccCCCccccHH----HHh----CCCCEEEECHH
Confidence 45667899999999999987766655443 459999999974 2 2221111222 222 24699999954
No 45
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=97.42 E-value=0.00032 Score=58.48 Aligned_cols=65 Identities=14% Similarity=0.103 Sum_probs=42.4
Q ss_pred HHHHHHHHHCCCeEEEeecCC-CHHHHHHHHHhcCEEEeCCCC-CCCCcChHHHHHHHHHHHHHHhCCCCcceEee
Q 028817 111 ASYVKFVESAGARVIPLIYNE-PEEILFEKLKLVNGVLLTGGW-AKKGLYFQIVEKIFKHEAIYERKKQSLVHGIT 184 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~-~~e~l~~~Ld~VDGVLLTGG~-DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic 184 (203)
.+.++.+++.|+.+++++... +.+.++++ ..|||+|+||. +.+ -+.....+++.+ +++.||+|||
T Consensus 13 ~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~--~~d~iilsgGpg~p~--~~~~~~~~i~~~-----~~~~PvLGIC 79 (188)
T TIGR00566 13 YNLVQYFCELGAEVVVKRNDSLTLQEIEAL--LPLLIVISPGPCTPN--EAGISLEAIRHF-----AGKLPILGVC 79 (188)
T ss_pred HHHHHHHHHcCCceEEEECCCCCHHHHHhc--CCCEEEEcCCCCChh--hcchhHHHHHHh-----ccCCCEEEEC
Confidence 445667777899999999653 34444322 48999999997 532 223334444443 3456999999
No 46
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=97.35 E-value=0.00017 Score=59.97 Aligned_cols=67 Identities=16% Similarity=-0.005 Sum_probs=39.7
Q ss_pred HHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCc-ChHHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 113 YVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGL-YFQIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 113 YVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~-yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
-.+.+++.|+.+.+++. .++ ++..|+|+++||..-+.. .+-....+.+...+.. +...||+|||+|-
T Consensus 14 ~~~~l~~~g~~v~v~~~---~~~----l~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~-~~~~pilGiC~G~ 81 (198)
T cd01748 14 VANALERLGAEVIITSD---PEE----ILSADKLILPGVGAFGDAMANLRERGLIEALKEAI-ASGKPFLGICLGM 81 (198)
T ss_pred HHHHHHHCCCeEEEEcC---hHH----hccCCEEEECCCCcHHHHHHHHHHcChHHHHHHHH-HCCCcEEEECHHH
Confidence 35678889998888773 222 567999999997541111 0111122333333332 2346999999983
No 47
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=97.22 E-value=0.00051 Score=57.53 Aligned_cols=71 Identities=10% Similarity=0.037 Sum_probs=39.6
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
..+.+++++.|...-++... +.+ -++.+|||+|+||..-.-........+.+...+..+ .+.||+|||.|-
T Consensus 17 ~~~~~~l~~~g~~~~~~~~~-~~~----~l~~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~-~~~pilGIC~G~ 87 (200)
T PRK13527 17 DALKRALDELGIDGEVVEVR-RPG----DLPDCDALIIPGGESTTIGRLMKREGILDEIKEKIE-EGLPILGTCAGL 87 (200)
T ss_pred HHHHHHHHhcCCCeEEEEeC-ChH----HhccCCEEEECCCcHHHHHHHHhhccHHHHHHHHHH-CCCeEEEECHHH
Confidence 44556777788755555543 222 356799999999953100001111223444444432 335999999763
No 48
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=97.21 E-value=0.00038 Score=65.94 Aligned_cols=82 Identities=16% Similarity=0.196 Sum_probs=56.0
Q ss_pred CEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHH--
Q 028817 84 PVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQI-- 161 (203)
Q Consensus 84 PVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~-- 161 (203)
+.|||.-+. ..+|.-+..++.++++ |..+.+-+..+++ +..+|+|+|+||. |..+..
T Consensus 234 ~~iavA~D~------------AF~FyY~enl~~L~~~-aelv~fSPl~~~~-----lp~~D~l~lpGG~---~e~~~~~L 292 (433)
T PRK13896 234 PTVAVARDA------------AFCFRYPATIERLRER-ADVVTFSPVAGDP-----LPDCDGVYLPGGY---PELHADAL 292 (433)
T ss_pred CeEEEEEcC------------ccceeCHHHHHHHHhc-CcEEEEcCCCCCC-----CCCCCEEEeCCCc---hhhHHHHH
Confidence 679986543 2345557788999999 9999988755443 4578999999998 444432
Q ss_pred -HHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 162 -VEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 162 -~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
.+..+ .++....+...||+|||||-
T Consensus 293 ~~n~~~-~~i~~~~~~G~pi~aeCGG~ 318 (433)
T PRK13896 293 ADSPAL-DELADRAADGLPVLGECGGL 318 (433)
T ss_pred HhCCcH-HHHHHHHHCCCcEEEEehHH
Confidence 12234 44444444446999999993
No 49
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=97.17 E-value=0.0013 Score=62.34 Aligned_cols=67 Identities=16% Similarity=0.166 Sum_probs=45.5
Q ss_pred hHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEee
Q 028817 110 AASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGIT 184 (203)
Q Consensus 110 ~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic 184 (203)
...-++.+.+.|+.++++|++.+.+++.+ ...|||+|+||.. +|.-+.......++.+ +..||+|||
T Consensus 251 K~nIlr~L~~~G~~v~VvP~~~~~~ei~~--~~pDGIiLSnGPG-DP~~~~~~ie~ik~l~-----~~iPIlGIC 317 (415)
T PLN02771 251 KHNILRRLASYGCKITVVPSTWPASEALK--MKPDGVLFSNGPG-DPSAVPYAVETVKELL-----GKVPVFGIC 317 (415)
T ss_pred HHHHHHHHHHcCCeEEEECCCCCHHHHhh--cCCCEEEEcCCCC-ChhHhhHHHHHHHHHH-----hCCCEEEEc
Confidence 46667788889999999999766554432 2689999999962 2433333333333333 357999999
No 50
>PRK13566 anthranilate synthase; Provisional
Probab=97.11 E-value=0.001 Score=66.64 Aligned_cols=66 Identities=18% Similarity=0.212 Sum_probs=48.4
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEee
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGIT 184 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic 184 (203)
....+++++.|+.+.++++..+.+.++. ..+|||||.||..- |..+ ..+.+++++++++ .||+|||
T Consensus 540 ~~l~~~Lr~~G~~v~vv~~~~~~~~~~~--~~~DgVVLsgGpgs-p~d~-~~~~lI~~a~~~~----iPILGIC 605 (720)
T PRK13566 540 HTLANYFRQTGAEVTTVRYGFAEEMLDR--VNPDLVVLSPGPGR-PSDF-DCKATIDAALARN----LPIFGVC 605 (720)
T ss_pred HHHHHHHHHCCCEEEEEECCCChhHhhh--cCCCEEEECCCCCC-hhhC-CcHHHHHHHHHCC----CcEEEEe
Confidence 4666788999999999998766555432 47899999888631 3222 2567777777554 8999999
No 51
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=97.07 E-value=0.0015 Score=45.09 Aligned_cols=88 Identities=17% Similarity=0.071 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcCh--HHHHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 109 IAASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYF--QIVEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 109 I~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY--~~~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
....+.+.++++|..+.+++.........+.....|+|+++||........ ......+++.... ..+|+|+|.|
T Consensus 13 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~~~~----~~~i~~~c~g 88 (115)
T cd01653 13 ELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLARDEALLALLREAAAA----GKPILGICLG 88 (115)
T ss_pred hhHHHHHHHHHCCCeEEEEcCCCCceeccCChhccCEEEECCCCCchhhhccCHHHHHHHHHHHHc----CCEEEEECch
Confidence 345667788999999999987654321123478899999999987555443 2233333333322 3599999999
Q ss_pred cccccccccccccCC
Q 028817 187 VVQKDYYTWPYHFSG 201 (203)
Q Consensus 187 ~~~~~~~~~~~~~~~ 201 (203)
.. -++.|+-.|..+
T Consensus 89 ~~-~l~~~~~~~~~~ 102 (115)
T cd01653 89 AQ-LLVLGVQFHPEA 102 (115)
T ss_pred hH-hHeeeccCChhh
Confidence 64 447777666654
No 52
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=97.04 E-value=0.0011 Score=63.63 Aligned_cols=63 Identities=14% Similarity=0.225 Sum_probs=36.5
Q ss_pred HHHHHHCCC-eEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 114 VKFVESAGA-RVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 114 VkaVe~AGA-~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
+++++++|. .+.++.. .+.+ -++.+|+|+||||.+..-... .+.|.+..++. ..||||||||-
T Consensus 12 ~~al~~lg~~~~~vv~~-~~~~----~l~~~D~lILPGG~~~~~~~l--~~~l~~~i~~~----g~pvlGICgG~ 75 (476)
T PRK06278 12 LPCFENFGNLPTKIIDE-NNIK----EIKDLDGLIIPGGSLVESGSL--TDELKKEILNF----DGYIIGICSGF 75 (476)
T ss_pred HHHHHHhcCCCcEEEEe-CChH----HhccCCEEEECCCchhhcchH--HHHHHHHHHHc----CCeEEEEcHHH
Confidence 456777776 3333333 2333 367899999999954322111 23333333233 46999999983
No 53
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.03 E-value=0.00096 Score=55.87 Aligned_cols=69 Identities=19% Similarity=0.055 Sum_probs=42.6
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcC-hHHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLY-FQIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~y-Y~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
...++.+++.|+.+.++. +.+ -++..|||+++||..-+... +...+.+.+...+.- +.+.||+|||.|-
T Consensus 13 ~~i~~~l~~~G~~v~~~~---~~~----~l~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~-~~~~pvlGIC~G~ 82 (205)
T PRK13141 13 RSVEKALERLGAEAVITS---DPE----EILAADGVILPGVGAFPDAMANLRERGLDEVIKEAV-ASGKPLLGICLGM 82 (205)
T ss_pred HHHHHHHHHCCCeEEEEC---CHH----HhccCCEEEECCCCchHHHHHHHHHcChHHHHHHHH-HCCCcEEEECHHH
Confidence 566778888999888764 222 25679999999975422221 112223444443333 3345999999873
No 54
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=96.98 E-value=0.00085 Score=57.72 Aligned_cols=70 Identities=19% Similarity=0.222 Sum_probs=43.4
Q ss_pred HHHHHHHHHCC-CeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCcc
Q 028817 111 ASYVKFVESAG-ARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDVV 188 (203)
Q Consensus 111 ~sYVkaVe~AG-A~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~~ 188 (203)
+..+++++++| +.++.+.. .+ -|+.+|||++|||..=.=...-....+++-..+.- +.-.||||+|-|-+
T Consensus 13 ~EH~~~l~~~~~~e~~~Vk~---~~----dL~~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~~-~~G~Pv~GTCAGlI 83 (194)
T COG0311 13 EEHLEALEKAGGAEVVEVKR---PE----DLEGVDGLIIPGGESTTIGRLLKRYGLLEPLREFI-ADGLPVFGTCAGLI 83 (194)
T ss_pred HHHHHHHHhhcCCceEEEcC---HH----HhccCcEEEecCccHHHHHHHHHHcCcHHHHHHHH-HcCCceEEechhhh
Confidence 56778999995 88888863 22 37889999999998611111111122333333322 33459999999853
No 55
>PRK05637 anthranilate synthase component II; Provisional
Probab=96.97 E-value=0.0022 Score=54.76 Aligned_cols=72 Identities=17% Similarity=0.092 Sum_probs=45.2
Q ss_pred HHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEee-------
Q 028817 112 SYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGIT------- 184 (203)
Q Consensus 112 sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic------- 184 (203)
+-++.+++.|+...+++++.+.+++. ....|||+|.||.- +|.-.+....+++. ..++.||+|||
T Consensus 16 nl~~~l~~~g~~~~v~~~~~~~~~l~--~~~~~~iIlsgGPg-~~~d~~~~~~li~~-----~~~~~PiLGIClG~Qlla 87 (208)
T PRK05637 16 NLVDAFAVAGYKCTVFRNTVPVEEIL--AANPDLICLSPGPG-HPRDAGNMMALIDR-----TLGQIPLLGICLGFQALL 87 (208)
T ss_pred HHHHHHHHCCCcEEEEeCCCCHHHHH--hcCCCEEEEeCCCC-CHHHhhHHHHHHHH-----HhCCCCEEEEcHHHHHHH
Confidence 34567788899999999875544443 23679999999973 12111222333332 12457999999
Q ss_pred ---CCccccc
Q 028817 185 ---GDVVQKD 191 (203)
Q Consensus 185 ---~~~~~~~ 191 (203)
||.|-++
T Consensus 88 ~alGG~V~~~ 97 (208)
T PRK05637 88 EHHGGKVEPC 97 (208)
T ss_pred HHcCCeeccC
Confidence 6676553
No 56
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=96.95 E-value=0.0026 Score=53.98 Aligned_cols=94 Identities=16% Similarity=0.100 Sum_probs=56.3
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHC-CCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHH
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESA-GARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQI 161 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~A-GA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~ 161 (203)
++.|.+.+..... ...|+ +++.+++++. |..+..+.... .++..+.++..|+|+|+||.-..=..+=.
T Consensus 31 ~~~i~~IptAs~~---------~~~~~-~~~~~a~~~l~G~~~~~~~~~~-~~~~~~~l~~ad~I~l~GG~~~~~~~~l~ 99 (212)
T cd03146 31 RPKVLFVPTASGD---------RDEYT-ARFYAAFESLRGVEVSHLHLFD-TEDPLDALLEADVIYVGGGNTFNLLAQWR 99 (212)
T ss_pred CCeEEEECCCCCC---------HHHHH-HHHHHHHhhccCcEEEEEeccC-cccHHHHHhcCCEEEECCchHHHHHHHHH
Confidence 5677776665321 12233 5677888999 99988887543 44556788999999999984211100111
Q ss_pred HHHHHHHHHHHHhCCCCcceEeeCCcc
Q 028817 162 VEKIFKHEAIYERKKQSLVHGITGDVV 188 (203)
Q Consensus 162 ~~~I~~~AL~~n~~g~~PV~Gic~~~~ 188 (203)
...+.+ +|+.-.++.-|+.|||.|..
T Consensus 100 ~~~l~~-~l~~~~~~g~~i~G~SAGa~ 125 (212)
T cd03146 100 EHGLDA-ILKAALERGVVYIGWSAGSN 125 (212)
T ss_pred HcCHHH-HHHHHHHCCCEEEEECHhHH
Confidence 112222 33322233369999999853
No 57
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=96.93 E-value=0.0018 Score=54.03 Aligned_cols=72 Identities=13% Similarity=0.092 Sum_probs=45.6
Q ss_pred HHHHHHHCCCeEEEeecCC-CHHHHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEee-------
Q 028817 113 YVKFVESAGARVIPLIYNE-PEEILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGIT------- 184 (203)
Q Consensus 113 YVkaVe~AGA~PV~LP~~~-~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic------- 184 (203)
-++.+.+.|+.+.+++.+. +.+++++ ...|||+|.||.- +|...+....++++ .+++.||+|||
T Consensus 15 l~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iils~GPg-~p~~~~~~~~~~~~-----~~~~~PiLGIClG~Q~la 86 (187)
T PRK08007 15 LYQYFCELGADVLVKRNDALTLADIDA--LKPQKIVISPGPC-TPDEAGISLDVIRH-----YAGRLPILGVCLGHQAMA 86 (187)
T ss_pred HHHHHHHCCCcEEEEeCCCCCHHHHHh--cCCCEEEEcCCCC-ChHHCCccHHHHHH-----hcCCCCEEEECHHHHHHH
Confidence 4556677899999998763 3333322 2579999999973 12223334444443 23557999999
Q ss_pred ---CCcccccc
Q 028817 185 ---GDVVQKDY 192 (203)
Q Consensus 185 ---~~~~~~~~ 192 (203)
||+|-|.-
T Consensus 87 ~a~Gg~v~~~~ 97 (187)
T PRK08007 87 QAFGGKVVRAA 97 (187)
T ss_pred HHcCCEEEeCC
Confidence 77776543
No 58
>CHL00101 trpG anthranilate synthase component 2
Probab=96.93 E-value=0.0022 Score=53.41 Aligned_cols=66 Identities=9% Similarity=-0.001 Sum_probs=40.7
Q ss_pred HHHHHHHCCCeEEEeecCC-CHHHHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 113 YVKFVESAGARVIPLIYNE-PEEILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 113 YVkaVe~AGA~PV~LP~~~-~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
-++.+++.|....+++... +.+.+. ....|||+++||.. +|...+.++.+.+. .+.+.||+|||=|
T Consensus 15 l~~~l~~~g~~~~v~~~~~~~~~~~~--~~~~dgiiisgGpg-~~~~~~~~~~i~~~-----~~~~~PiLGIClG 81 (190)
T CHL00101 15 LVQSLGELNSDVLVCRNDEIDLSKIK--NLNIRHIIISPGPG-HPRDSGISLDVISS-----YAPYIPILGVCLG 81 (190)
T ss_pred HHHHHHhcCCCEEEEECCCCCHHHHh--hCCCCEEEECCCCC-ChHHCcchHHHHHH-----hcCCCcEEEEchh
Confidence 4556777899999888753 333221 24689999999973 22222223333332 2455799999944
No 59
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=96.79 E-value=0.0022 Score=54.91 Aligned_cols=69 Identities=12% Similarity=-0.029 Sum_probs=44.2
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChH-HHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQ-IVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~-~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
.+-++++++.+..++.+. +.++ ++..|+|+|||+.+....... ....+.+..++.- +...||+|||.|-
T Consensus 13 ~s~~~al~~~~~~~~~~~---~~~~----l~~~d~iIlPG~g~~~~~~~~l~~~gl~~~i~~~~-~~~~pilGiC~G~ 82 (210)
T PRK14004 13 HSCLKAVSLYTKDFVFTS---DPET----IENSKALILPGDGHFDKAMENLNSTGLRSTIDKHV-ESGKPLFGICIGF 82 (210)
T ss_pred HHHHHHHHHcCCeEEEEC---CHHH----hccCCEEEECCCCchHHHHHHHHHcCcHHHHHHHH-HcCCCEEEECHhH
Confidence 566788999999888773 3333 468999999999754322211 1223444444433 3455999999883
No 60
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=96.79 E-value=0.0041 Score=41.00 Aligned_cols=76 Identities=20% Similarity=0.048 Sum_probs=48.8
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCcc
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDVV 188 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~~ 188 (203)
..+.+.+++.+....+++...............|+|+++||.+...... ......+...+.-.+ ..||.|+|.|..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~g~~~~~~~~~-~~~~~~~~~~~~~~~-~~~i~~~~~g~~ 90 (92)
T cd03128 15 ASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLA-WDEALLALLREAAAA-GKPVLGICLGAQ 90 (92)
T ss_pred ecHHHHHHhCCCEEEEEeCCCCcccccCCcccCCEEEECCCCcchhhhc-cCHHHHHHHHHHHHc-CCEEEEEecccc
Confidence 4566778889998888887654332133578899999999998655443 122222222222222 359999999863
No 61
>PRK07567 glutamine amidotransferase; Provisional
Probab=96.72 E-value=0.0034 Score=54.66 Aligned_cols=79 Identities=18% Similarity=0.135 Sum_probs=44.5
Q ss_pred HHHHHHHHHCCCe---EEEeecCCCHHHHHHHHHhcCEEEeCCCC-CC-CC-----cChHHHHHHHHHHHHHHhCCCCcc
Q 028817 111 ASYVKFVESAGAR---VIPLIYNEPEEILFEKLKLVNGVLLTGGW-AK-KG-----LYFQIVEKIFKHEAIYERKKQSLV 180 (203)
Q Consensus 111 ~sYVkaVe~AGA~---PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~-DV-dP-----~yY~~~~~I~~~AL~~n~~g~~PV 180 (203)
..|.+++++.|.. ...+....... ...-++.+|||+++||. ++ +. .+-...+.....++..-.+.+.||
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~Pv 96 (242)
T PRK07567 18 AEYAAFLRYTGLDPAELRRIRLDREPL-PDLDLDDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPF 96 (242)
T ss_pred chHHHHHHhcCCCccceEEEecccCCC-CCCCHhhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCE
Confidence 7778888888765 22222222211 11136788999999996 23 22 122233333333443333344799
Q ss_pred eEee----------CCcccc
Q 028817 181 HGIT----------GDVVQK 190 (203)
Q Consensus 181 ~Gic----------~~~~~~ 190 (203)
+||| ||+|.+
T Consensus 97 LGIC~G~Qlla~a~GG~V~~ 116 (242)
T PRK07567 97 LGACYGVGTLGHHQGGVVDR 116 (242)
T ss_pred EEEchhHHHHHHHcCCEEec
Confidence 9999 677766
No 62
>PRK06186 hypothetical protein; Validated
Probab=96.69 E-value=0.0066 Score=53.34 Aligned_cols=43 Identities=14% Similarity=0.020 Sum_probs=28.6
Q ss_pred HHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 138 EKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 138 ~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
+.|+.+|||+++||.-. .=.+-.-...++|++.| .|+||||-|
T Consensus 49 ~~l~~~dgilvpgGfg~--rg~~Gki~ai~~Are~~----iP~LGIClG 91 (229)
T PRK06186 49 EDLAGFDGIWCVPGSPY--RNDDGALTAIRFARENG----IPFLGTCGG 91 (229)
T ss_pred hhHhhCCeeEeCCCCCc--ccHhHHHHHHHHHHHcC----CCeEeechh
Confidence 47999999999999531 11111223345555544 799999998
No 63
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=96.69 E-value=0.0076 Score=53.25 Aligned_cols=84 Identities=23% Similarity=0.376 Sum_probs=56.8
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHH-hcCEEEeCCCC---C-CCCc
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKLK-LVNGVLLTGGW---A-KKGL 157 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld-~VDGVLLTGG~---D-VdP~ 157 (203)
||.|+|+--++..+ .+ .-..+++++|+.++.+...+ . .+. ..|||+++||- | +...
T Consensus 2 ~~kvaVi~fpGtN~----------d~---d~~~A~~~aG~~~~~V~~~d-~-----~~~~~~d~vv~pGGFSyGDyLr~G 62 (231)
T COG0047 2 RPKVAVLRFPGTNC----------DY---DMAAAFERAGFEAEDVWHSD-L-----LLGRDFDGVVLPGGFSYGDYLRAG 62 (231)
T ss_pred CceEEEEEcCCcCc----------hH---HHHHHHHHcCCCceEEEeee-c-----ccCCCccEEEEcCCCCcccccCcc
Confidence 68899987765422 11 22356789999999998743 2 144 59999999994 4 3433
Q ss_pred ChHHHHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 158 YFQIVEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 158 yY~~~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
.-.+...+++...+.-+ .+.||+|||=|
T Consensus 63 aiaa~~~v~~~v~~~a~-~g~~vLGICNG 90 (231)
T COG0047 63 AIAAIAPVMDEVREFAE-KGKPVLGICNG 90 (231)
T ss_pred hHHhhHHHHHHHHHHHH-CCCeEEEEcch
Confidence 33445666666666555 55699999987
No 64
>PRK00784 cobyric acid synthase; Provisional
Probab=96.68 E-value=0.0017 Score=61.70 Aligned_cols=68 Identities=18% Similarity=0.099 Sum_probs=42.9
Q ss_pred HHHHHHHH-CCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCC-CCcChHHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 112 SYVKFVES-AGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAK-KGLYFQIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 112 sYVkaVe~-AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DV-dP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
..++.+++ +|+.++.+.... .+..+|||+|+||..- ....+-..+.+.+...+.- +...||+|||||-
T Consensus 266 ~nl~~l~~~~g~~v~~~s~~~-------~l~~~d~lilpGg~~~~~~~~~~~~~~l~~~i~~~~-~~g~pilg~C~G~ 335 (488)
T PRK00784 266 TDFDPLRAEPGVDVRYVRPGE-------PLPDADLVILPGSKNTIADLAWLRESGWDEAIRAHA-RRGGPVLGICGGY 335 (488)
T ss_pred cChHHHhhcCCCeEEEECCcc-------ccccCCEEEECCccchHHHHHHHHHcCHHHHHHHHH-HcCCeEEEECHHH
Confidence 56778887 999988886421 2568999999999842 2111112222334433333 3346999999994
No 65
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=96.66 E-value=0.0029 Score=52.94 Aligned_cols=66 Identities=14% Similarity=0.086 Sum_probs=37.4
Q ss_pred HHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHHHHHH-HHHHHHHHhCCCCcceEeeCCc
Q 028817 114 VKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQIVEKI-FKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 114 VkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I-~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
.+.++..|+.+.+++. .+ -++.+|+|+++|+.+-.-. +...+.. ++..+..-.+...||+|||.|-
T Consensus 15 ~~~l~~~g~~v~v~~~---~~----~l~~~d~lii~G~~~~~~~-~~~l~~~~~~~l~~~~~~~~~pvlGiC~G~ 81 (196)
T TIGR01855 15 KRALKRVGAEPVVVKD---SK----EAELADKLILPGVGAFGAA-MARLRENGLDLFVELVVRLGKPVLGICLGM 81 (196)
T ss_pred HHHHHHCCCcEEEEcC---HH----HhccCCEEEECCCCCHHHH-HHHHHHcCcHHHHHHHHhCCCCEEEECHHH
Confidence 4556778988888873 22 2578999999996531101 1111111 2222222223346999999984
No 66
>PRK05380 pyrG CTP synthetase; Validated
Probab=96.60 E-value=0.0023 Score=62.31 Aligned_cols=87 Identities=21% Similarity=0.273 Sum_probs=48.8
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCC----eEEEeecCCCH---HHHHHHHHhcCEEEeCCCCCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGA----RVIPLIYNEPE---EILFEKLKLVNGVLLTGGWAKK 155 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA----~PV~LP~~~~~---e~l~~~Ld~VDGVLLTGG~DVd 155 (203)
+-.||+.+-... ....| .+..++++.||+ .+.+...+... +...+.|+.+|||+|+||..-.
T Consensus 288 ~v~IalVGKY~~---------l~DaY--~Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~L~~~DGIIlpGGfG~~ 356 (533)
T PRK05380 288 EVTIALVGKYVE---------LPDAY--KSVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELLKGVDGILVPGGFGER 356 (533)
T ss_pred ceEEEEEeCccC---------CcHHH--HHHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhHhhcCCEEEecCCCCcc
Confidence 456888766422 12233 455567766653 34443332211 1245789999999999996321
Q ss_pred CcChHHHHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 156 GLYFQIVEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 156 P~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
.. .....+.+++++ .+.|+||||-|
T Consensus 357 ~~--~g~i~~i~~a~e----~~iPiLGIClG 381 (533)
T PRK05380 357 GI--EGKILAIRYARE----NNIPFLGICLG 381 (533)
T ss_pred cc--ccHHHHHHHHHH----CCCcEEEEchH
Confidence 11 122334455543 33799999954
No 67
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=96.57 E-value=0.0043 Score=52.30 Aligned_cols=64 Identities=13% Similarity=0.158 Sum_probs=39.6
Q ss_pred HHHHHHHHCCCeEEEeecCC-CHHHHHHHHHhcCEEEeCCCC-CCCCcChHHHHHHHHHHHHHHhCCCCcceEee
Q 028817 112 SYVKFVESAGARVIPLIYNE-PEEILFEKLKLVNGVLLTGGW-AKKGLYFQIVEKIFKHEAIYERKKQSLVHGIT 184 (203)
Q Consensus 112 sYVkaVe~AGA~PV~LP~~~-~~e~l~~~Ld~VDGVLLTGG~-DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic 184 (203)
.-++.+++.|..+.+++.+. +.+++++ ...|||+|.||. ++ .-.+....+.+ + .+++.||+|||
T Consensus 14 nl~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iIlsgGP~~p--~~~~~~~~~i~----~-~~~~~PvLGIC 79 (195)
T PRK07649 14 NLVQFLGELGQELVVKRNDEVTISDIEN--MKPDFLMISPGPCSP--NEAGISMEVIR----Y-FAGKIPIFGVC 79 (195)
T ss_pred HHHHHHHHCCCcEEEEeCCCCCHHHHhh--CCCCEEEECCCCCCh--HhCCCchHHHH----H-hcCCCCEEEEc
Confidence 35667788899999988763 3333322 368999999997 32 11222222222 1 13557999999
No 68
>PRK06490 glutamine amidotransferase; Provisional
Probab=96.48 E-value=0.0037 Score=54.43 Aligned_cols=68 Identities=12% Similarity=0.007 Sum_probs=41.1
Q ss_pred HHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCC-C-CCc-ChHHHHHHHHHHHHHHhCCCCcceEee
Q 028817 112 SYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWA-K-KGL-YFQIVEKIFKHEAIYERKKQSLVHGIT 184 (203)
Q Consensus 112 sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~D-V-dP~-yY~~~~~I~~~AL~~n~~g~~PV~Gic 184 (203)
.+.+++++.|...-+.....+. .+.+-++.+|||+++||.. + +.. +....+.+.+.+++. +.||+|||
T Consensus 23 ~l~~~l~~~g~~~~v~~~~~~~-~~p~~l~~~dgvii~Ggp~~~~d~~~wi~~~~~~i~~~~~~----~~PvLGIC 93 (239)
T PRK06490 23 RVGQLLQERGYPLDIRRPRLGD-PLPDTLEDHAGAVIFGGPMSANDPDDFIRREIDWISVPLKE----NKPFLGIC 93 (239)
T ss_pred HHHHHHHHCCCceEEEeccCCC-CCCCcccccCEEEEECCCCCCCCCchHHHHHHHHHHHHHHC----CCCEEEEC
Confidence 4567788888887766543221 1222367799999999962 2 222 223344445444432 36999999
No 69
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=96.45 E-value=0.011 Score=50.77 Aligned_cols=69 Identities=22% Similarity=0.247 Sum_probs=42.6
Q ss_pred HHHHHHH-HCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCC----CCcChHHHHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 112 SYVKFVE-SAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAK----KGLYFQIVEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 112 sYVkaVe-~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DV----dP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
+-+++++ .+|+.+..+.... . .++.+|+|+|+||.+. ..........+.+...+.. +.+-||+|||.|
T Consensus 16 d~~~a~~~~~G~~~~~v~~~~-~-----~l~~~D~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~~-~~g~~ilgIC~G 88 (219)
T PRK03619 16 DMARALRDLLGAEPEYVWHKE-T-----DLDGVDAVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEFA-EKGKPVLGICNG 88 (219)
T ss_pred HHHHHHHhcCCCeEEEEecCc-C-----CCCCCCEEEECCCCchhhhhccchhhhchHHHHHHHHHH-HCCCEEEEECHH
Confidence 3367888 7999888886532 1 2678899999999642 1111111233333333333 234599999998
Q ss_pred c
Q 028817 187 V 187 (203)
Q Consensus 187 ~ 187 (203)
.
T Consensus 89 ~ 89 (219)
T PRK03619 89 F 89 (219)
T ss_pred H
Confidence 5
No 70
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=96.43 E-value=0.0059 Score=50.68 Aligned_cols=69 Identities=13% Similarity=0.145 Sum_probs=42.5
Q ss_pred HHHHHHCCCeEEEeecCC-CHHHHHHHHHhcCEEEeCCCC-CCCCcChHHHHHHHHHHHHHHhCCCCcceEee-------
Q 028817 114 VKFVESAGARVIPLIYNE-PEEILFEKLKLVNGVLLTGGW-AKKGLYFQIVEKIFKHEAIYERKKQSLVHGIT------- 184 (203)
Q Consensus 114 VkaVe~AGA~PV~LP~~~-~~e~l~~~Ld~VDGVLLTGG~-DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic------- 184 (203)
++.+.+.|+.+.+++.+. +.++++++ ..|||+|.||. ++. -.+....+.+. .+++.||+|||
T Consensus 16 ~~~l~~~~~~~~v~~~~~~~~~~~~~~--~~~~iilsgGP~~~~--~~~~~~~~i~~-----~~~~~PiLGIC~G~Qlla 86 (191)
T PRK06774 16 YQYFCELGTEVMVKRNDELQLTDIEQL--APSHLVISPGPCTPN--EAGISLAVIRH-----FADKLPILGVCLGHQALG 86 (191)
T ss_pred HHHHHHCCCcEEEEeCCCCCHHHHHhc--CCCeEEEcCCCCChH--hCCCchHHHHH-----hcCCCCEEEECHHHHHHH
Confidence 445566899999998753 34443322 57999999997 431 11112333332 24557999999
Q ss_pred ---CCccccc
Q 028817 185 ---GDVVQKD 191 (203)
Q Consensus 185 ---~~~~~~~ 191 (203)
||+|-+.
T Consensus 87 ~~~GG~v~~~ 96 (191)
T PRK06774 87 QAFGARVVRA 96 (191)
T ss_pred HHhCCEEEeC
Confidence 7777654
No 71
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=96.40 E-value=0.0008 Score=54.62 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=31.8
Q ss_pred HHHhcCEEEeCCCCC-CCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 139 KLKLVNGVLLTGGWA-KKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 139 ~Ld~VDGVLLTGG~D-VdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
.++.+|+|+|+||.. +.-.-+. .+.=++.+|.+..+...||+|||||-
T Consensus 4 ~~~~~D~i~lpGg~pe~~~~~l~-~~~~~~~~I~~~~~~G~pi~aeCGG~ 52 (158)
T PF07685_consen 4 LPPDADGIYLPGGYPELFALELS-RNRGLKEAIREAAEAGGPIYAECGGY 52 (158)
T ss_pred CCCCCCEEEECCCcHHHHHHHHH-HHhCHHHHHHHHHHcCCcEEEEchHH
Confidence 467899999999985 2211111 23345556666555567999999984
No 72
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=96.38 E-value=0.018 Score=57.95 Aligned_cols=74 Identities=14% Similarity=0.057 Sum_probs=43.6
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
-.|++.+-..++.+.+++++....+..+.++..|||++.||.- +|.. .....+.+.+++.+.+.+.||+|||=|
T Consensus 22 ~~~l~~~~g~~~~v~vv~~d~~~~~~~~~l~~~D~VVIspGPG-~p~~-~~~~~i~~~i~~~~~~~~iPvLGIClG 95 (742)
T TIGR01823 22 VRLLEQQTDISVHVTTVHSDTFQDQLLELLPLFDAIVVGPGPG-NPNN-AQDMGIISELWELANLDEVPVLGICLG 95 (742)
T ss_pred HHHHHHhcCCCcEEEEEeCCCCchhhhhhhcCCCEEEECCCCC-Cccc-hhhhHHHHHHHHhcccCCCcEEEEchh
Confidence 3444444323456678887644333333467899999999864 2321 122335555555554556799999944
No 73
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=96.32 E-value=0.0036 Score=53.83 Aligned_cols=49 Identities=8% Similarity=0.208 Sum_probs=36.7
Q ss_pred HHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCcc
Q 028817 140 LKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDVV 188 (203)
Q Consensus 140 Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~~ 188 (203)
++.||||++|||..-.=..--+..-+|......-+++..||||+|.|-+
T Consensus 54 ~aq~DaLIIPGGEST~mslia~~tgL~d~L~~fVhn~~k~~WGTCAGmI 102 (226)
T KOG3210|consen 54 LAQCDALIIPGGESTAMSLIAERTGLYDDLYAFVHNPSKVTWGTCAGMI 102 (226)
T ss_pred HhhCCEEEecCCchhHHHHHHhhhhhHHHHHHHhcCCCccceeechhhh
Confidence 7889999999998643333333334777777777888889999999964
No 74
>PLN02335 anthranilate synthase
Probab=96.32 E-value=0.012 Score=50.73 Aligned_cols=65 Identities=17% Similarity=0.126 Sum_probs=38.8
Q ss_pred HHHHHHHHHCCCeEEEeecCC-CHHHHHHHHHhcCEEEeCCCCC-CCCcChHHHHHHHHHHHHHHhCCCCcceEee
Q 028817 111 ASYVKFVESAGARVIPLIYNE-PEEILFEKLKLVNGVLLTGGWA-KKGLYFQIVEKIFKHEAIYERKKQSLVHGIT 184 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~-~~e~l~~~Ld~VDGVLLTGG~D-VdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic 184 (203)
...++++++.|..+.+++.+. +.+.++ ....|||+|.||.- +. +.. ...+... ...++.||||||
T Consensus 32 ~~i~~~L~~~g~~~~v~~~~~~~~~~~~--~~~~d~iVisgGPg~p~----d~~-~~~~~~~--~~~~~~PiLGIC 98 (222)
T PLN02335 32 YNLCQYMGELGCHFEVYRNDELTVEELK--RKNPRGVLISPGPGTPQ----DSG-ISLQTVL--ELGPLVPLFGVC 98 (222)
T ss_pred HHHHHHHHHCCCcEEEEECCCCCHHHHH--hcCCCEEEEcCCCCChh----hcc-chHHHHH--HhCCCCCEEEec
Confidence 346677888899999998753 333322 23579999999973 31 111 1122221 123345999999
No 75
>PRK08250 glutamine amidotransferase; Provisional
Probab=96.26 E-value=0.0063 Score=52.73 Aligned_cols=69 Identities=19% Similarity=0.237 Sum_probs=39.5
Q ss_pred HHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCC-------CCCcCh--HHHHHHHHHHHHHHhCCCCcceE
Q 028817 112 SYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWA-------KKGLYF--QIVEKIFKHEAIYERKKQSLVHG 182 (203)
Q Consensus 112 sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~D-------VdP~yY--~~~~~I~~~AL~~n~~g~~PV~G 182 (203)
.|-.+++++|...-+....... .+..-++.+|||+++||.. ..| +. ..++.+.+.+++. +.||+|
T Consensus 16 ~~~~~~~~~g~~~~~~~~~~g~-~~p~~~~~~d~vii~GGp~~~~~~~~~~p-~~~~~~~~~~i~~~~~~----~~PvlG 89 (235)
T PRK08250 16 AYLKWAENRGYDISYSRVYAGE-ALPENADGFDLLIVMGGPQSPRTTREECP-YFDSKAEQRLINQAIKA----GKAVIG 89 (235)
T ss_pred HHHHHHHHCCCeEEEEEccCCC-CCCCCccccCEEEECCCCCChhhcccccc-ccchHHHHHHHHHHHHc----CCCEEE
Confidence 3455667788666554433222 1222356789999999953 122 22 2344555555442 369999
Q ss_pred eeCC
Q 028817 183 ITGD 186 (203)
Q Consensus 183 ic~~ 186 (203)
||.|
T Consensus 90 IC~G 93 (235)
T PRK08250 90 VCLG 93 (235)
T ss_pred EChh
Confidence 9964
No 76
>PRK07053 glutamine amidotransferase; Provisional
Probab=96.18 E-value=0.01 Score=51.58 Aligned_cols=67 Identities=10% Similarity=0.034 Sum_probs=41.7
Q ss_pred HHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCC-CC-CCc---ChHHHHHHHHHHHHHHhCCCCcceEee
Q 028817 113 YVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGW-AK-KGL---YFQIVEKIFKHEAIYERKKQSLVHGIT 184 (203)
Q Consensus 113 YVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~-DV-dP~---yY~~~~~I~~~AL~~n~~g~~PV~Gic 184 (203)
..+++++.|..+-++.....+. ...-++.+|||+++||. .+ +.. +...+..+++.+++. +.||+|||
T Consensus 19 i~~~L~~~g~~~~v~~~~~~~~-~~~~~~~~d~lii~Ggp~~~~d~~~~p~~~~~~~~i~~~~~~----~~PvlGIC 90 (234)
T PRK07053 19 FEQVLGARGYRVRYVDVGVDDL-ETLDALEPDLLVVLGGPIGVYDDELYPFLAPEIALLRQRLAA----GLPTLGIC 90 (234)
T ss_pred HHHHHHHCCCeEEEEecCCCcc-CCCCccCCCEEEECCCCCCCCCCCcCCcHHHHHHHHHHHHHC----CCCEEEEC
Confidence 4567888898887776543221 11124679999999985 32 322 334455555555433 36999999
No 77
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=96.07 E-value=0.0037 Score=55.56 Aligned_cols=90 Identities=17% Similarity=0.201 Sum_probs=48.3
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCC---CCCcCh
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWA---KKGLYF 159 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~D---VdP~yY 159 (203)
||.|+|+.-++... ...=+.+++++|+.+..+..++ .-.-+..|+.+|||+|+||-. .--.=-
T Consensus 1 kpkV~Vl~~pGtNc-------------e~e~~~A~~~aG~~~~~v~~~d-l~~~~~~l~~~~~lvipGGFS~gD~l~sg~ 66 (259)
T PF13507_consen 1 KPKVAVLRFPGTNC-------------ERETAAAFENAGFEPEIVHIND-LLSGESDLDDFDGLVIPGGFSYGDYLRSGA 66 (259)
T ss_dssp --EEEEEE-TTEEE-------------HHHHHHHHHCTT-EEEEEECCH-HHTTS--GCC-SEEEE-EE-GGGGTTSTTH
T ss_pred CCEEEEEECCCCCC-------------HHHHHHHHHHcCCCceEEEEEe-cccccCchhhCcEEEECCccCccccchHHH
Confidence 57788887765421 2334468999999999887532 111123689999999999953 111111
Q ss_pred HHHHHH-----HHHHHHHHhCC-CCcceEeeCC
Q 028817 160 QIVEKI-----FKHEAIYERKK-QSLVHGITGD 186 (203)
Q Consensus 160 ~~~~~I-----~~~AL~~n~~g-~~PV~Gic~~ 186 (203)
..+..+ ...+++...++ +-+|+|||-|
T Consensus 67 ~~a~~~~~~~~~~~~i~~f~~~~g~~vLGIcNG 99 (259)
T PF13507_consen 67 IAAARLLFNSPLMDAIREFLERPGGFVLGICNG 99 (259)
T ss_dssp HHHHHHCCSCCCHHHHHHHHHCTT-EEEEECHH
T ss_pred HHHHHhhccHHHHHHHHHHHhcCCCeEEEEchH
Confidence 122222 24455555555 6699999975
No 78
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=96.01 E-value=0.0078 Score=58.11 Aligned_cols=67 Identities=9% Similarity=0.062 Sum_probs=38.7
Q ss_pred HHHHHHHHCCCe--EEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 112 SYVKFVESAGAR--VIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 112 sYVkaVe~AGA~--PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
.-++.+.+.|.. +++.|.+.+.+++.. ...|||+|+||.. +|...+....+++. + ....||+|||-|
T Consensus 14 nl~~~l~~~g~~~v~~~~~~~~~~~~~~~--~~~d~vIlsgGP~-~p~~~~~~~~li~~-~----~~~~PvLGIClG 82 (534)
T PRK14607 14 NIYQYIGELGPEEIEVVRNDEITIEEIEA--LNPSHIVISPGPG-RPEEAGISVEVIRH-F----SGKVPILGVCLG 82 (534)
T ss_pred HHHHHHHHcCCCeEEEECCCCCCHHHHHh--cCCCEEEECCCCC-ChhhCCccHHHHHH-h----hcCCCEEEEcHH
Confidence 356677788885 333354434443321 2469999999985 33333334444443 1 244699999943
No 79
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=96.01 E-value=0.02 Score=47.74 Aligned_cols=66 Identities=12% Similarity=0.054 Sum_probs=41.0
Q ss_pred HHHHHHHHHCCCeEEEeecCC-CHHHHHHHHHhcCEEEeCCCC-CCCCcChHHHHHHHHHHHHHHhCCCCcceEeeC
Q 028817 111 ASYVKFVESAGARVIPLIYNE-PEEILFEKLKLVNGVLLTGGW-AKKGLYFQIVEKIFKHEAIYERKKQSLVHGITG 185 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~-~~e~l~~~Ld~VDGVLLTGG~-DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~ 185 (203)
...++++++.|..+.++++.. +.+.+++ ...|||++.||. ++. ..+....+.++ .++..||||||=
T Consensus 13 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~--~~~~~iilsgGp~~~~--~~~~~~~~i~~-----~~~~~PiLGICl 80 (193)
T PRK08857 13 YNLYQYFCELGAQVKVVRNDEIDIDGIEA--LNPTHLVISPGPCTPN--EAGISLQAIEH-----FAGKLPILGVCL 80 (193)
T ss_pred HHHHHHHHHCCCcEEEEECCCCCHHHHhh--CCCCEEEEeCCCCChH--HCcchHHHHHH-----hcCCCCEEEEcH
Confidence 447788888999999999763 3222211 136899999987 432 11112233332 245579999993
No 80
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=95.98 E-value=0.0097 Score=57.95 Aligned_cols=68 Identities=12% Similarity=0.103 Sum_probs=41.2
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHHHH--HHHHHHHHHHhCCCCcceEeeCCc
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQIVE--KIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~--~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
.+-.+++++.|..+..+.. .+ -++.+|+|+|+||.+.... +...+ .+.+...+.- +...||||||.|-
T Consensus 20 ~sl~~al~~~G~~v~~v~~---~~----~l~~~D~lIlpG~gs~~~~-m~~L~~~gl~~~i~~~i-~~g~PvLGIC~G~ 89 (538)
T PLN02617 20 RSVRNAIRHLGFTIKDVQT---PE----DILNADRLIFPGVGAFGSA-MDVLNNRGMAEALREYI-QNDRPFLGICLGL 89 (538)
T ss_pred HHHHHHHHHCCCeEEEECC---hh----hhccCCEEEECCCCCHHHH-HHHHHHcCHHHHHHHHH-HcCCCEEEECHHH
Confidence 4446778889998877752 22 2588999999998763221 11111 1222222222 2346999999873
No 81
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=95.91 E-value=0.029 Score=49.22 Aligned_cols=93 Identities=10% Similarity=0.070 Sum_probs=57.9
Q ss_pred CCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCC--CCcCh
Q 028817 82 NRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAK--KGLYF 159 (203)
Q Consensus 82 ~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DV--dP~yY 159 (203)
.+|.|.......... ....|+ +.+.+++++.|..+..|... ++..+.|+.+|+|+++||... --.+.
T Consensus 30 ~~~~v~fIPtAs~~~-------~~~~y~-~~~~~af~~lG~~v~~l~~~---~d~~~~l~~ad~I~v~GGnt~~l~~~l~ 98 (233)
T PRK05282 30 GRRKAVFIPYAGVTQ-------SWDDYT-AKVAEALAPLGIEVTGIHRV---ADPVAAIENAEAIFVGGGNTFQLLKQLY 98 (233)
T ss_pred CCCeEEEECCCCCCC-------CHHHHH-HHHHHHHHHCCCEEEEeccc---hhhHHHHhcCCEEEECCccHHHHHHHHH
Confidence 356777665554211 133455 56778889999998887643 345678999999999999741 11121
Q ss_pred HHHHHHHHHHHHHHhCCCCcceEeeCCcc
Q 028817 160 QIVEKIFKHEAIYERKKQSLVHGITGDVV 188 (203)
Q Consensus 160 ~~~~~I~~~AL~~n~~g~~PV~Gic~~~~ 188 (203)
+ ..+.+...++..+| .|++|+|-|..
T Consensus 99 ~--~gl~~~l~~~~~~G-~~~~G~SAGAi 124 (233)
T PRK05282 99 E--RGLLAPIREAVKNG-TPYIGWSAGAN 124 (233)
T ss_pred H--CCcHHHHHHHHHCC-CEEEEECHHHH
Confidence 1 12333223333444 79999999863
No 82
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=95.86 E-value=0.032 Score=46.89 Aligned_cols=94 Identities=11% Similarity=0.189 Sum_probs=60.3
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCC--CHHHHHHHHHhcCEEEeCCCCCCCCcChH
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNE--PEEILFEKLKLVNGVLLTGGWAKKGLYFQ 160 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~--~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~ 160 (203)
.+.|.+....... ...-.+.|.++.++.|+..+.+.... +.++..+.|..+|+|+|+||.- ..+.+
T Consensus 29 ~~~i~~iptA~~~----------~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~--~~~~~ 96 (210)
T cd03129 29 GARVLFIPTASGD----------RDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQ--LRLLS 96 (210)
T ss_pred CCeEEEEeCCCCC----------hHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcH--HHHHH
Confidence 4666766554321 12233678889999999998887643 4467788999999999999975 11122
Q ss_pred HH--HHHHHHHHHHHhCCCCcceEeeCCccc
Q 028817 161 IV--EKIFKHEAIYERKKQSLVHGITGDVVQ 189 (203)
Q Consensus 161 ~~--~~I~~~AL~~n~~g~~PV~Gic~~~~~ 189 (203)
.- ..+++..++... +.-++.|+|-|...
T Consensus 97 ~l~~t~~~~~i~~~~~-~G~v~~G~SAGA~~ 126 (210)
T cd03129 97 VLRETPLLDAILKRVA-RGVVIGGTSAGAAV 126 (210)
T ss_pred HHHhCChHHHHHHHHH-cCCeEEEcCHHHHH
Confidence 21 124444444443 34599999988653
No 83
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=95.67 E-value=0.016 Score=49.55 Aligned_cols=67 Identities=18% Similarity=0.145 Sum_probs=38.1
Q ss_pred HHHHHHHCC-CeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHH--HHHHHHHHHHHHhCCCCcceEee
Q 028817 113 YVKFVESAG-ARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQI--VEKIFKHEAIYERKKQSLVHGIT 184 (203)
Q Consensus 113 YVkaVe~AG-A~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~--~~~I~~~AL~~n~~g~~PV~Gic 184 (203)
+-+.++..| ..-.++|+..+.+.+. ....|||+|+||.. ..|.+. .+..-++..+....+ .||+|||
T Consensus 17 i~r~~re~g~v~~e~~~~~~~~~~~~--~~~~~giIlsGgp~--sv~~~~~w~~~~~~~i~~~~~p~-~pvLGIC 86 (198)
T COG0518 17 IARRLRELGYVYSEIVPYTGDAEELP--LDSPDGIIISGGPM--SVYDEDPWLPREKDLIKDAGVPG-KPVLGIC 86 (198)
T ss_pred HHHHHHHcCCceEEEEeCCCCccccc--ccCCCEEEEcCCCC--CCccccccchhHHHHHHHhCCCC-CCEEEEC
Confidence 334577888 6667778776555442 22339999999972 111111 233333333333222 2899999
No 84
>PRK09065 glutamine amidotransferase; Provisional
Probab=95.60 E-value=0.021 Score=49.47 Aligned_cols=41 Identities=22% Similarity=0.294 Sum_probs=27.9
Q ss_pred HHhcCEEEeCCCCC-C-C-CcChHHHHHHHHHHHHHHhCCCCcceEee
Q 028817 140 LKLVNGVLLTGGWA-K-K-GLYFQIVEKIFKHEAIYERKKQSLVHGIT 184 (203)
Q Consensus 140 Ld~VDGVLLTGG~D-V-d-P~yY~~~~~I~~~AL~~n~~g~~PV~Gic 184 (203)
++.+|||+++||.. + + -.+....+.+.+.+++. +.||+|||
T Consensus 52 ~~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~----~~PvlGIC 95 (237)
T PRK09065 52 PDDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAA----GMPLLGIC 95 (237)
T ss_pred hhhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHC----CCCEEEEC
Confidence 56789999999973 2 1 12224456666666643 37999999
No 85
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=95.43 E-value=0.0058 Score=58.18 Aligned_cols=45 Identities=22% Similarity=0.297 Sum_probs=29.0
Q ss_pred HHhcCEEEeCCCCCCCCcChHH---HHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 140 LKLVNGVLLTGGWAKKGLYFQI---VEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 140 Ld~VDGVLLTGG~DVdP~yY~~---~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
|..+|+|+|+||.+ ..+.. .+.=+..++....+...||+|||||-
T Consensus 282 l~~~d~lilpGg~~---~~~~~~~l~~~~~~~~i~~~~~~G~pvlgiCgG~ 329 (475)
T TIGR00313 282 LTGCDAVIIPGSKS---TIADLYALKQSGFAEEILDFAKEGGIVIGICGGY 329 (475)
T ss_pred cccCCEEEECCcch---HHHHHHHHHhcChHHHHHHHHHcCCcEEEEcHHH
Confidence 56899999999984 22221 11123445555444556999999994
No 86
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=95.30 E-value=0.082 Score=50.78 Aligned_cols=85 Identities=16% Similarity=0.207 Sum_probs=63.6
Q ss_pred CEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHH-hcCEEEeCCCCCCCCcChHH-
Q 028817 84 PVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKLK-LVNGVLLTGGWAKKGLYFQI- 161 (203)
Q Consensus 84 PVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld-~VDGVLLTGG~DVdP~yY~~- 161 (203)
..|+|.-+. ...|--+..++.++++||..|.+-+..+++ +. .+|+|+|.||. |+.|-.
T Consensus 246 ~rIAVA~D~------------AF~FyY~~nl~~Lr~~GAelv~FSPL~D~~-----lP~~~D~vYlgGGY---PElfA~~ 305 (451)
T COG1797 246 VRIAVARDA------------AFNFYYPENLELLREAGAELVFFSPLADEE-----LPPDVDAVYLGGGY---PELFAEE 305 (451)
T ss_pred ceEEEEecc------------hhccccHHHHHHHHHCCCEEEEeCCcCCCC-----CCCCCCEEEeCCCC---hHHHHHH
Confidence 579986553 233444677899999999999998876655 45 59999999997 566632
Q ss_pred --HHHHHHHHHHHHhCCCCcceEeeCCcc
Q 028817 162 --VEKIFKHEAIYERKKQSLVHGITGDVV 188 (203)
Q Consensus 162 --~~~I~~~AL~~n~~g~~PV~Gic~~~~ 188 (203)
...=+..++.+....-.||.|=|||-+
T Consensus 306 L~~n~~~~~~i~~~~~~G~piyaECGGlM 334 (451)
T COG1797 306 LSANESMRRAIKAFAAAGKPIYAECGGLM 334 (451)
T ss_pred HhhCHHHHHHHHHHHHcCCceEEecccce
Confidence 344577777777777779999999953
No 87
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=95.27 E-value=0.04 Score=47.97 Aligned_cols=68 Identities=18% Similarity=0.055 Sum_probs=43.3
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChH-HHHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQ-IVEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~-~~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
++--++++++|+.+++-- +.+ .++..|+|+|||=.......-. ..+.+.+...+.-..| .|++|||=|
T Consensus 15 ~Sv~~Aler~G~~~~vs~---d~~----~i~~AD~liLPGVGaf~~am~~L~~~gl~~~i~~~~~~~-kP~LGIClG 83 (204)
T COG0118 15 RSVKKALERLGAEVVVSR---DPE----EILKADKLILPGVGAFGAAMANLRERGLIEAIKEAVESG-KPFLGICLG 83 (204)
T ss_pred HHHHHHHHHcCCeeEEec---CHH----HHhhCCEEEecCCCCHHHHHHHHHhcchHHHHHHHHhcC-CCEEEEeHh
Confidence 455678999999887763 333 3789999999994432222222 1223344444444445 799999965
No 88
>PRK05665 amidotransferase; Provisional
Probab=95.24 E-value=0.018 Score=50.33 Aligned_cols=50 Identities=12% Similarity=0.106 Sum_probs=33.5
Q ss_pred HHhcCEEEeCCCC-CCC--CcChHHHHHHHHHHHHHHhCCCCcceEee----------CCccccccc
Q 028817 140 LKLVNGVLLTGGW-AKK--GLYFQIVEKIFKHEAIYERKKQSLVHGIT----------GDVVQKDYY 193 (203)
Q Consensus 140 Ld~VDGVLLTGG~-DVd--P~yY~~~~~I~~~AL~~n~~g~~PV~Gic----------~~~~~~~~~ 193 (203)
++.+|||++|||. ++. -.+-...+.+.+.+++. ..||+||| ||+|-+.-.
T Consensus 55 ~~~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~----~~PilGIC~GhQlla~AlGG~V~~~~~ 117 (240)
T PRK05665 55 DEKFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYER----GDKLLGVCFGHQLLALLLGGKAERASQ 117 (240)
T ss_pred cccCCEEEECCCCCCccccchHHHHHHHHHHHHHhc----CCCEEEEeHHHHHHHHHhCCEEEeCCC
Confidence 5679999999995 442 22335556666665543 26999999 777766543
No 89
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=95.09 E-value=0.098 Score=52.73 Aligned_cols=66 Identities=18% Similarity=0.218 Sum_probs=42.3
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEee
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGIT 184 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic 184 (203)
....+++++.|+.+.+++.....+.++ ....|||+|.||..- |.-++ ...+.+.+++ .+.||+|||
T Consensus 530 ~~l~~~L~~~G~~v~vv~~~~~~~~~~--~~~~DgLILsgGPGs-p~d~~-~~~~I~~~~~----~~iPvLGIC 595 (717)
T TIGR01815 530 HTLANYLRQTGASVTTLRHSHAEAAFD--ERRPDLVVLSPGPGR-PADFD-VAGTIDAALA----RGLPVFGVC 595 (717)
T ss_pred HHHHHHHHHCCCeEEEEECCCChhhhh--hcCCCEEEEcCCCCC-chhcc-cHHHHHHHHH----CCCCEEEEC
Confidence 566788899999998888754433222 246899999888631 21122 2334444443 347999999
No 90
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=95.05 E-value=0.078 Score=49.74 Aligned_cols=70 Identities=14% Similarity=0.134 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCC-CCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 109 IAASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGW-AKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 109 I~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~-DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
+.++-++.+.+-|+++.++|++.+.+++. --.-|||+|+=|. | |+.-+.+-...+..+.+. .||+|||=|
T Consensus 189 vK~nIlr~L~~rg~~vtVVP~~t~~eeIl--~~~pDGiflSNGPGD--P~~~~~~i~~ik~l~~~~----iPifGICLG 259 (368)
T COG0505 189 VKRNILRELVKRGCRVTVVPADTSAEEIL--ALNPDGIFLSNGPGD--PAPLDYAIETIKELLGTK----IPIFGICLG 259 (368)
T ss_pred ccHHHHHHHHHCCCeEEEEcCCCCHHHHH--hhCCCEEEEeCCCCC--hhHHHHHHHHHHHHhccC----CCeEEEcHH
Confidence 45677888999999999999987666542 2456999999996 5 555555444444444433 499999966
No 91
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=94.45 E-value=0.088 Score=45.54 Aligned_cols=47 Identities=6% Similarity=0.096 Sum_probs=29.0
Q ss_pred HHhcCEEEeCCCCCCCCcChH---------HHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 140 LKLVNGVLLTGGWAKKGLYFQ---------IVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 140 Ld~VDGVLLTGG~DVdP~yY~---------~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
++..|+|+||||..-...+++ ..+.+.+.+.+..++| -||.+||.|.
T Consensus 80 ~~dyDalviPGG~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~g-K~VaAIChgp 135 (213)
T cd03133 80 AADFDALIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAG-KPIGAICIAP 135 (213)
T ss_pred HhHCCEEEECCCCchhhhhhhhcccccccccCHHHHHHHHHHHHCC-CeEEEECHHH
Confidence 567899999999532112222 2234555554444433 4999999986
No 92
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=94.06 E-value=0.11 Score=41.63 Aligned_cols=74 Identities=15% Similarity=0.174 Sum_probs=47.4
Q ss_pred HHHHHHHHHCCCeEEEeecCC-CHHHHHHHHHhcCEEEeCCCCCCCCcChH--HHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 111 ASYVKFVESAGARVIPLIYNE-PEEILFEKLKLVNGVLLTGGWAKKGLYFQ--IVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~-~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~--~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
+.|.+++++.|..+..|.... +.++..+.+...|+|+|+||.-. .+.+ ....+.+...+...+| -+|-|+=-|.
T Consensus 3 ~~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~~~--~l~~~l~~t~l~~~i~~~~~~G-~vi~G~SAGA 79 (154)
T PF03575_consen 3 EKFRKAFRKLGFEVDQLDLSDRNDADILEAIREADAIFLGGGDTF--RLLRQLKETGLDEAIREAYRKG-GVIIGTSAGA 79 (154)
T ss_dssp HHHHHHHHHCT-EEEECCCTSCGHHHHHHHHHHSSEEEE--S-HH--HHHHHHHHTTHHHHHHHHHHTT-SEEEEETHHH
T ss_pred HHHHHHHHHCCCEEEEEeccCCChHHHHHHHHhCCEEEECCCCHH--HHHHHHHhCCHHHHHHHHHHCC-CEEEEEChHH
Confidence 567788999999998998865 56788999999999999999742 1111 2233444444455555 6777764443
No 93
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=93.90 E-value=0.22 Score=51.65 Aligned_cols=68 Identities=9% Similarity=0.044 Sum_probs=39.8
Q ss_pred HHHHHHC-CCeEEEeecCC-CHHHHHHH---HHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeC
Q 028817 114 VKFVESA-GARVIPLIYNE-PEEILFEK---LKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITG 185 (203)
Q Consensus 114 VkaVe~A-GA~PV~LP~~~-~~e~l~~~---Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~ 185 (203)
++.+++. |..|+++..+. +.+++..+ +...|||||.||.. +|..-.......+...+. ++.||+|||=
T Consensus 98 ~~~L~~~~g~~~~Vv~nd~~~~~~~~~~~~~~~~~d~IVlSPGPG-~P~~~~d~Gi~~~~i~~~---~~iPILGICL 170 (918)
T PLN02889 98 YQELSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPGPG-SPTCPADIGICLRLLLEC---RDIPILGVCL 170 (918)
T ss_pred HHHHHHhcCCCEEEEeCCCCCHHHHHhhhhcccCCCEEEECCCCC-CccchHHHHHHHHHHHHh---CCCcEEEEcH
Confidence 3445554 88888888653 33444332 35689999999974 353332232222222221 3479999993
No 94
>PLN02327 CTP synthase
Probab=93.87 E-value=0.17 Score=49.86 Aligned_cols=44 Identities=20% Similarity=0.225 Sum_probs=27.6
Q ss_pred HHHHHHhcCEEEeCCCC-CCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 136 LFEKLKLVNGVLLTGGW-AKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 136 l~~~Ld~VDGVLLTGG~-DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
+.+.|+.+|||++|||. +. ..-+... ..+++. ..+.|++|||-|
T Consensus 356 ~~~~L~~~DGIvvpGGfG~~--~~~G~i~-ai~~ar----e~~iP~LGIClG 400 (557)
T PLN02327 356 AWKLLKGADGILVPGGFGDR--GVEGKIL-AAKYAR----ENKVPYLGICLG 400 (557)
T ss_pred hHHhhccCCEEEeCCCCCCc--ccccHHH-HHHHHH----HcCCCEEEEcHH
Confidence 34679999999999996 41 1112211 123332 234699999998
No 95
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=93.51 E-value=0.17 Score=43.70 Aligned_cols=47 Identities=11% Similarity=0.138 Sum_probs=30.0
Q ss_pred HHhcCEEEeCCCCCC---------CCcChHHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 140 LKLVNGVLLTGGWAK---------KGLYFQIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 140 Ld~VDGVLLTGG~DV---------dP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
.+..|+|+||||.-. .|.+-.....+.+++.+..++| -||.+||-|.
T Consensus 83 ~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~g-K~vaAIChgp 138 (217)
T PRK11780 83 AEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAG-KPIGFICIAP 138 (217)
T ss_pred hhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCC-CEEEEECHHH
Confidence 567999999999421 1333333444555555555444 4999999885
No 96
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=93.09 E-value=0.11 Score=47.27 Aligned_cols=41 Identities=15% Similarity=0.137 Sum_probs=33.0
Q ss_pred HhcCEEEeCCCCC----C-CCcChHHHHHHHHHHHHHHhCCCCcceEeeC
Q 028817 141 KLVNGVLLTGGWA----K-KGLYFQIVEKIFKHEAIYERKKQSLVHGITG 185 (203)
Q Consensus 141 d~VDGVLLTGG~D----V-dP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~ 185 (203)
+.+||+++||+.. . +-.|+++.+.|++.+.+. ..|++|||=
T Consensus 98 ~~~DG~IITGAp~e~~~fedv~YW~El~~i~~w~~~~----~~s~LgICw 143 (302)
T PRK05368 98 EKFDGLIITGAPVEQLPFEDVDYWDELKEILDWAKTH----VTSTLFICW 143 (302)
T ss_pred CCCCEEEEcCCCCCCccCCCCchHHHHHHHHHHHHHc----CCCEEEEcH
Confidence 5789999999973 2 456788999999998864 369999993
No 97
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=92.64 E-value=0.072 Score=42.22 Aligned_cols=46 Identities=9% Similarity=-0.098 Sum_probs=26.2
Q ss_pred HhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCcc
Q 028817 141 KLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDVV 188 (203)
Q Consensus 141 d~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~~ 188 (203)
+..|.|+||||+.-+-..--.... ..++....+..-|++|||-|--
T Consensus 43 ~~ad~lVlPGGa~~~~~~~L~~~g--~~~i~~~v~~g~p~LGIClGAy 88 (114)
T cd03144 43 SKTALLVVPGGADLPYCRALNGKG--NRRIRNFVRNGGNYLGICAGAY 88 (114)
T ss_pred hCCCEEEECCCChHHHHHHHHhhC--cHHHHHHHHCCCcEEEEecCcc
Confidence 489999999987522111111111 2333332334469999998863
No 98
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=92.46 E-value=0.55 Score=50.22 Aligned_cols=92 Identities=21% Similarity=0.345 Sum_probs=55.2
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCC--------CHHHHHHHHHhcCEEEeCCCC
Q 028817 81 NNRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNE--------PEEILFEKLKLVNGVLLTGGW 152 (203)
Q Consensus 81 ~~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~--------~~e~l~~~Ld~VDGVLLTGG~ 152 (203)
..||.++|+.-++..+ . ..=..++++||+.+..+.... +.+.+.+-|+..|||+|+||-
T Consensus 975 ~~kpkvaIl~~pGtNc----------e---~d~a~Af~~aG~~~~~v~~~dl~~~~i~~s~~~~~~~l~~~~~l~~pGGF 1041 (1239)
T TIGR01857 975 VEKPRVVIPVFPGTNS----------E---YDSAKAFEKEGAEVNLVIFRNLNEEALVESVETMVDEIDKSQILMLPGGF 1041 (1239)
T ss_pred CCCCeEEEEECCCCCC----------H---HHHHHHHHHcCCceEEEEEecCcccccccchhhhhcccccCcEEEEcCcc
Confidence 3589999998876532 1 222356788999988877543 112222347999999999995
Q ss_pred ---CCC-C--cChHHH---HHHHHHHHHHHhCCCCcceEeeCC
Q 028817 153 ---AKK-G--LYFQIV---EKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 153 ---DVd-P--~yY~~~---~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
|.- . .+..+. ..+. .+++...+.+-+++|||=|
T Consensus 1042 SyGD~l~~~~~~~aa~~~n~~~~-~~~~~f~~~d~~~LGICNG 1083 (1239)
T TIGR01857 1042 SAGDEPDGSAKFIAAILRNPKVR-VAIDSFLARDGLILGICNG 1083 (1239)
T ss_pred CcccccchhHHHHHHHhhChHHH-HHHHHHHhCCCcEEEechH
Confidence 321 1 222121 1233 3333333456699999977
No 99
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=91.96 E-value=0.58 Score=50.18 Aligned_cols=90 Identities=16% Similarity=0.240 Sum_probs=54.3
Q ss_pred CCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHH
Q 028817 82 NRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQI 161 (203)
Q Consensus 82 ~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~ 161 (203)
.||.|+|+.-++... . ..=..+++++|+.+..+...+-.+ -...|+.++||+|+||-.-.- +.+.
T Consensus 1034 ~~pkv~il~~pG~N~----------~---~e~~~Af~~aG~~~~~v~~~dl~~-~~~~l~~~~~l~~~GGFS~gD-~lgs 1098 (1290)
T PRK05297 1034 ARPKVAILREQGVNS----------H---VEMAAAFDRAGFDAIDVHMSDLLA-GRVTLEDFKGLVACGGFSYGD-VLGA 1098 (1290)
T ss_pred CCCeEEEEECCCCCC----------H---HHHHHHHHHcCCCeEEEEeecCcC-CCCChhhCcEEEECCccCCcc-cchH
Confidence 578999988876432 1 222357889999988877642111 012489999999999953211 2233
Q ss_pred HH----------HHHHHHHHHHhCCCCcceEeeCC
Q 028817 162 VE----------KIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 162 ~~----------~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
.+ .+.+...+.-.+.+-+++|||=|
T Consensus 1099 g~~~a~~~~~n~~~~~~~~~f~~~~d~~~LGiCNG 1133 (1290)
T PRK05297 1099 GEGWAKSILFNPRLRDQFEAFFARPDTFALGVCNG 1133 (1290)
T ss_pred HHHHHHHhhccHHHHHHHHHHHhCCCceEEEEcHH
Confidence 22 22332333233555699999965
No 100
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=91.84 E-value=0.16 Score=40.35 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=27.4
Q ss_pred HHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 140 LKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 140 Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
.+..|+|+++||.. +..+.....+.+...+... ...+|.+||.|.
T Consensus 58 ~~~~D~vvv~Gg~~--~~~~~~~~~l~~~l~~~~~-~~~~i~~ic~G~ 102 (166)
T TIGR01382 58 PEEYDALVIPGGRA--PEYLRLNNKAVRLVREFVE-KGKPVAAICHGP 102 (166)
T ss_pred HHHCcEEEECCCCC--HHHhccCHHHHHHHHHHHH-cCCEEEEEChHH
Confidence 34689999999964 2222222334444444433 335999999986
No 101
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=91.72 E-value=0.94 Score=39.20 Aligned_cols=71 Identities=14% Similarity=0.082 Sum_probs=52.0
Q ss_pred hHHHHHHHHHCCCeE-EEeecCCCHHHHHHHHHhcCEEEe------CCCCCCCCcChHHHHHHHHHHHHHHhCCC-Ccce
Q 028817 110 AASYVKFVESAGARV-IPLIYNEPEEILFEKLKLVNGVLL------TGGWAKKGLYFQIVEKIFKHEAIYERKKQ-SLVH 181 (203)
Q Consensus 110 ~~sYVkaVe~AGA~P-V~LP~~~~~e~l~~~Ld~VDGVLL------TGG~DVdP~yY~~~~~I~~~AL~~n~~g~-~PV~ 181 (203)
....++.++++|.++ |.|.+..+.+.++.+++.+|.|++ .||+..-|.-++..+.+-++.. .+|- .||.
T Consensus 95 ~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~---~~~~~~~I~ 171 (220)
T PRK08883 95 VDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMID---ESGRDIRLE 171 (220)
T ss_pred HHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHH---hcCCCeeEE
Confidence 456778899999888 666666688999999999999999 7788777777776666544432 2333 3776
Q ss_pred Ee
Q 028817 182 GI 183 (203)
Q Consensus 182 Gi 183 (203)
.+
T Consensus 172 vd 173 (220)
T PRK08883 172 ID 173 (220)
T ss_pred EE
Confidence 64
No 102
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=91.10 E-value=0.33 Score=47.25 Aligned_cols=71 Identities=14% Similarity=0.140 Sum_probs=40.0
Q ss_pred HHHHHHCCCeEEEeecCCCHH-HHHHHHH-hcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEee-------
Q 028817 114 VKFVESAGARVIPLIYNEPEE-ILFEKLK-LVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGIT------- 184 (203)
Q Consensus 114 VkaVe~AGA~PV~LP~~~~~e-~l~~~Ld-~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic------- 184 (203)
++.+++.|+.+.++..+.+.+ .++++.+ ..|+|+|.||..- |.-.+....+++. .+.+.||+|||
T Consensus 18 ~~~lr~~g~~v~V~~~~~~~~~~~~~l~~~~~~~IIlSpGPg~-p~d~~~~~~i~~~-----~~~~iPILGIClG~QlLa 91 (531)
T PRK09522 18 ADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGV-PSEAGCMPELLTR-----LRGKLPIIGICLGHQAIV 91 (531)
T ss_pred HHHHHHCCCCEEEEECCCCCccCHHHHHhcCcCEEEEcCCCCC-hhhCCCCHHHHHH-----HhcCCCEEEEcHHHHHHH
Confidence 344566788888887543321 2333322 3579999999741 2111222334432 12457999999
Q ss_pred ---CCcccc
Q 028817 185 ---GDVVQK 190 (203)
Q Consensus 185 ---~~~~~~ 190 (203)
||+|-+
T Consensus 92 ~a~GG~V~~ 100 (531)
T PRK09522 92 EAYGGYVGQ 100 (531)
T ss_pred HhcCCEEEe
Confidence 677755
No 103
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=90.98 E-value=0.28 Score=39.86 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=26.6
Q ss_pred HhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 141 KLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 141 d~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
+..|+|+++||.. +..+.....+.+...+.. +...+|.|||.|+
T Consensus 75 ~~~D~liv~GG~~--~~~~~~~~~~~~~l~~~~-~~~k~i~~ic~G~ 118 (180)
T cd03169 75 DDYDALVIPGGRA--PEYLRLDEKVLAIVRHFA-EANKPVAAICHGP 118 (180)
T ss_pred hHCCEEEEcCCCC--hhhhccCHHHHHHHHHHH-HcCCEEEEECcHH
Confidence 4679999999964 232322223333333333 2335999999986
No 104
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=90.87 E-value=0.27 Score=51.61 Aligned_cols=66 Identities=20% Similarity=0.233 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCC-C--CCCcChHHHHHHHHHHHHHHhCCCCcceEeeC
Q 028817 109 IAASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGW-A--KKGLYFQIVEKIFKHEAIYERKKQSLVHGITG 185 (203)
Q Consensus 109 I~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~-D--VdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~ 185 (203)
+...-++.+.+-||.+-++|.+.+.+.. .-||++|+.|. | +-|..+++++++++. + -||.|||=
T Consensus 182 ~K~N~IRcL~~RGa~vtVvPw~~~i~~~-----~yDGlflSNGPGdPe~~~~~v~~vr~lL~~-------~-~PvfGICl 248 (1435)
T KOG0370|consen 182 LKYNQIRCLVKRGAEVTVVPWDYPIAKE-----EYDGLFLSNGPGDPELCPLLVQNVRELLES-------N-VPVFGICL 248 (1435)
T ss_pred chHHHHHHHHHhCceEEEecCCcccccc-----ccceEEEeCCCCCchhhHHHHHHHHHHHhC-------C-CCeEEEeh
Confidence 4455678889999999999997654422 67999999997 4 455566666666543 2 79999997
Q ss_pred Cc
Q 028817 186 DV 187 (203)
Q Consensus 186 ~~ 187 (203)
|-
T Consensus 249 GH 250 (1435)
T KOG0370|consen 249 GH 250 (1435)
T ss_pred hh
Confidence 74
No 105
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=90.74 E-value=0.61 Score=50.09 Aligned_cols=90 Identities=14% Similarity=0.172 Sum_probs=53.8
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChH
Q 028817 81 NNRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQ 160 (203)
Q Consensus 81 ~~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~ 160 (203)
.+||.|+|+.-++... . ..=..+++++|+.+..+...+-.+. +.-|+.++||+|+||-.- ..+.+
T Consensus 1053 ~~~p~vail~~pG~N~----------~---~e~~~Af~~aGf~~~~v~~~dl~~~-~~~l~~~~~lv~~GGFSy-gD~lg 1117 (1310)
T TIGR01735 1053 GVRPKVAILREQGVNG----------D---REMAAAFDRAGFEAWDVHMSDLLAG-RVHLDEFRGLAACGGFSY-GDVLG 1117 (1310)
T ss_pred CCCceEEEEECCCCCC----------H---HHHHHHHHHhCCCcEEEEEeccccC-CcchhheeEEEEcCCCCC-ccchh
Confidence 4579999988775422 1 1222478899988888876431110 013678899999999532 11123
Q ss_pred HHH----------HHHHHHHHHHh-CCCCcceEeeCC
Q 028817 161 IVE----------KIFKHEAIYER-KKQSLVHGITGD 186 (203)
Q Consensus 161 ~~~----------~I~~~AL~~n~-~g~~PV~Gic~~ 186 (203)
..+ .+.+ +++... +.+-+++|||=|
T Consensus 1118 sg~~~a~~i~~~~~~~~-~~~~f~~~~d~~~LGiCNG 1153 (1310)
T TIGR01735 1118 AGKGWAKSILFNPRLRD-QFQAFFKRPDTFSLGVCNG 1153 (1310)
T ss_pred HHHHHHHHHHhChHHHH-HHHHHHhCCCceEEEecHH
Confidence 322 3333 333444 555699999976
No 106
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=90.65 E-value=0.87 Score=49.01 Aligned_cols=91 Identities=12% Similarity=0.214 Sum_probs=54.1
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCC---CC-CC
Q 028817 81 NNRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGW---AK-KG 156 (203)
Q Consensus 81 ~~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~---DV-dP 156 (203)
..||.|+|+.-++... . ..=..+++++|+.+..+...+-.+ -...|+.++||+|+||- |+ ..
T Consensus 1035 ~~~pkVaVl~~pGtN~----------~---~e~~~Af~~aGf~~~~V~~~dl~~-~~~~L~~~~glv~pGGFSyGD~l~s 1100 (1307)
T PLN03206 1035 TSKPKVAIIREEGSNG----------D---REMAAAFYAAGFEPWDVTMSDLLN-GRISLDDFRGIVFVGGFSYADVLDS 1100 (1307)
T ss_pred CCCCeEEEEECCCCCC----------H---HHHHHHHHHcCCceEEEEeeeccc-ccccccceeEEEEcCcCCCccccch
Confidence 3579999988876432 1 222357889999888877642111 12347899999999995 42 21
Q ss_pred c-ChH-HH---HHHHHHHHHHHh-CCCCcceEeeCC
Q 028817 157 L-YFQ-IV---EKIFKHEAIYER-KKQSLVHGITGD 186 (203)
Q Consensus 157 ~-yY~-~~---~~I~~~AL~~n~-~g~~PV~Gic~~ 186 (203)
. .+- +. ..+. .+++... +.+-+++|||=|
T Consensus 1101 g~~wa~~i~~n~~~~-~~~~~f~~~~d~~~LGICNG 1135 (1307)
T PLN03206 1101 AKGWAGSIRFNEPLL-QQFQEFYNRPDTFSLGVCNG 1135 (1307)
T ss_pred HHHHHHHHHhChHHH-HHHHHHHhCCCceEEEEcHH
Confidence 1 111 11 1223 3344444 445699999954
No 107
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=90.18 E-value=0.81 Score=40.26 Aligned_cols=92 Identities=16% Similarity=0.247 Sum_probs=52.4
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCe-EEEeecCC----CHHHHHHHHHhcCEEEeCCCCCC--C
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGAR-VIPLIYNE----PEEILFEKLKLVNGVLLTGGWAK--K 155 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~-PV~LP~~~----~~e~l~~~Ld~VDGVLLTGG~DV--d 155 (203)
+|.|.+.+.... ......+.|.+++++.|+. +..+.... +.++..+.+...|+|+|+||.-. .
T Consensus 28 ~~rI~~iptAS~----------~~~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~GGnq~~l~ 97 (250)
T TIGR02069 28 DAIIVIITSASE----------EPREVGERYITIFSRLGVKEVKILDVREREDASDENAIALLSNATGIFFTGGDQLRIT 97 (250)
T ss_pred CceEEEEeCCCC----------ChHHHHHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhCCEEEEeCCCHHHHH
Confidence 467777765432 1123356899999999984 44444321 22355678999999999999741 1
Q ss_pred CcChHHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 156 GLYFQIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 156 P~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
..+ ....+.+...++..+| -++.|+=.|.
T Consensus 98 ~~l--~~t~l~~~l~~~~~~G-~vi~G~SAGA 126 (250)
T TIGR02069 98 SLL--GDTPLLDRLRKRVHEG-IILGGTSAGA 126 (250)
T ss_pred HHH--cCCcHHHHHHHHHHcC-CeEEEccHHH
Confidence 111 1122223222344444 5777765554
No 108
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=89.94 E-value=1.7 Score=46.44 Aligned_cols=89 Identities=12% Similarity=0.183 Sum_probs=53.5
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCC-CCCcCh
Q 028817 81 NNRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWA-KKGLYF 159 (203)
Q Consensus 81 ~~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~D-VdP~yY 159 (203)
..||.|+|+.-++... . ..=..++++||+.+..+...+-.+. +.|+.++||+|+||.. -|+.--
T Consensus 927 ~~~p~VaIl~~pG~N~----------~---~e~~~Af~~aGf~~~~v~~~dl~~~--~~l~~f~glv~~Ggfsy~D~lgs 991 (1202)
T TIGR01739 927 DPRHQVAVLLLPGQSV----------P---HGLLAALTNAGFDPRIVSITELKKT--DFLDTFSGLIIGGASGTLDSEVG 991 (1202)
T ss_pred CCCCeEEEEeCCCCCC----------H---HHHHHHHHHcCCceEEEEeccCCCC--CchhheEEEEEcCcCCCCccchH
Confidence 4589999988876422 1 2223578889999888876431110 1367889999999863 222222
Q ss_pred HH--H------HHHHHHHHHHHh-CCCCcceEeeC
Q 028817 160 QI--V------EKIFKHEAIYER-KKQSLVHGITG 185 (203)
Q Consensus 160 ~~--~------~~I~~~AL~~n~-~g~~PV~Gic~ 185 (203)
+. + ..+. .+++... +.+-+++|||-
T Consensus 992 g~~~a~~il~n~~~~-~~~~~f~~r~dtf~LGiCN 1025 (1202)
T TIGR01739 992 ARALAAALLRNQAFL-RDLLTFLNRPDTFSLGFGE 1025 (1202)
T ss_pred HHHHHHHhhcchHHH-HHHHHHHhCCCceEEEeCc
Confidence 21 1 2222 3344444 44569999998
No 109
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=89.84 E-value=0.21 Score=42.16 Aligned_cols=43 Identities=12% Similarity=0.033 Sum_probs=33.8
Q ss_pred HHhcCEEEeCCCCC----C-CCcChHHHHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 140 LKLVNGVLLTGGWA----K-KGLYFQIVEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 140 Ld~VDGVLLTGG~D----V-dP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
.+..||+++||..- . +-.|+++.+.|++.+.+.. .+++|||=|
T Consensus 60 ~~~yDGlIITGApve~~~fe~v~Yw~El~~i~dwa~~~v----~stl~iCWg 107 (175)
T cd03131 60 DAKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAKTHV----TSTLFSCWA 107 (175)
T ss_pred ccCCCEEEEeCCCcccCCccccchHHHHHHHHHHHHHhC----cchHHHHHH
Confidence 67899999999973 2 3478889999999998333 599999944
No 110
>PHA03366 FGAM-synthase; Provisional
Probab=88.85 E-value=1.4 Score=47.45 Aligned_cols=90 Identities=14% Similarity=0.169 Sum_probs=53.8
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCC---CCCCc
Q 028817 81 NNRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGW---AKKGL 157 (203)
Q Consensus 81 ~~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~---DVdP~ 157 (203)
..||.|+|+.-++... . ..=..++++||+.+..+...+-.. - +.|+.++||+|+||- |+-..
T Consensus 1026 ~~~prVaIl~~pG~N~----------~---~e~~~Af~~aGf~~~~v~~~dL~~-~-~~l~~f~glv~~GGFS~gD~l~~ 1090 (1304)
T PHA03366 1026 DKRHRVAVLLLPGCPG----------P---HALLAAFTNAGFDPYPVSIEELKD-G-TFLDEFSGLVIGGSSGAEDSYTG 1090 (1304)
T ss_pred CCCCeEEEEECCCCCC----------H---HHHHHHHHHcCCceEEEEeecCCC-C-CccccceEEEEcCCCCCcccccH
Confidence 4589999988876422 1 222357888999988887642111 0 118899999999995 43221
Q ss_pred ChHHHHHH-----HHHHHHHHh-CCCCcceEeeC
Q 028817 158 YFQIVEKI-----FKHEAIYER-KKQSLVHGITG 185 (203)
Q Consensus 158 yY~~~~~I-----~~~AL~~n~-~g~~PV~Gic~ 185 (203)
=-+-+..| ...+++... +.|-+++|||-
T Consensus 1091 ~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiCN 1124 (1304)
T PHA03366 1091 ARAAVAALLSNPAVRDALLRFLNRPDTFSLGCGE 1124 (1304)
T ss_pred HHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeCc
Confidence 11211111 223344444 44569999998
No 111
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=88.17 E-value=0.59 Score=37.00 Aligned_cols=45 Identities=9% Similarity=-0.025 Sum_probs=26.7
Q ss_pred HhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCcc
Q 028817 141 KLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDVV 188 (203)
Q Consensus 141 d~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~~ 188 (203)
...|+|+++||.+.. .....+.+.+.. ....+...+|.+||.|..
T Consensus 61 ~~~D~lvvpGG~~~~--~~~~~~~~~~~l-~~~~~~~~~i~~ic~G~~ 105 (165)
T cd03134 61 DDYDALVIPGGTNPD--KLRRDPDAVAFV-RAFAEAGKPVAAICHGPW 105 (165)
T ss_pred HHCCEEEECCCCChh--hhccCHHHHHHH-HHHHHcCCeEEEEchHHH
Confidence 467999999997422 111222333333 333334468999999964
No 112
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=87.98 E-value=2.1 Score=36.57 Aligned_cols=61 Identities=18% Similarity=0.363 Sum_probs=40.7
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCC-----CHHHHHHHHHhcCEEEeCCCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNE-----PEEILFEKLKLVNGVLLTGGWA 153 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~-----~~e~l~~~Ld~VDGVLLTGG~D 153 (203)
.+.|.+....... . ....+.|.+.+++.|+.-+.+.... +..++.+.++..|+|+|+||.-
T Consensus 29 ~~~i~~iptA~~~---------~-~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~ 94 (217)
T cd03145 29 GARIVVIPAASEE---------P-AEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQ 94 (217)
T ss_pred CCcEEEEeCCCcC---------h-hHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcH
Confidence 3566666554321 1 2335678889999998654443332 3446678899999999999974
No 113
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=87.73 E-value=2.6 Score=35.02 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=36.5
Q ss_pred CCCCCCCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhc
Q 028817 77 DRRLNNRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKLKLV 143 (203)
Q Consensus 77 ~~~~~~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~V 143 (203)
...+..||+|||.+-..-.. ........ +++.+|||.+|..-...++..++++++.+
T Consensus 85 f~~~~~k~vIgvVTK~DLae--------d~dI~~~~--~~L~eaGa~~IF~~s~~d~~gv~~l~~~L 141 (148)
T COG4917 85 FLDIGVKKVIGVVTKADLAE--------DADISLVK--RWLREAGAEPIFETSAVDNQGVEELVDYL 141 (148)
T ss_pred cccccccceEEEEecccccc--------hHhHHHHH--HHHHHcCCcceEEEeccCcccHHHHHHHH
Confidence 35667889999998764321 11122222 57899999999887765655555555543
No 114
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=87.71 E-value=0.59 Score=45.47 Aligned_cols=59 Identities=20% Similarity=0.115 Sum_probs=37.8
Q ss_pred CCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCC-CCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 121 GARVIPLIYNEPEEILFEKLKLVNGVLLTGGWA-KKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 121 GA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~D-VdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
+.++..+....+ |...|-|+|+|.-. +.-..|.+..-+-+ .+....++..+|+|||||-
T Consensus 276 ~v~v~~v~~~~~-------l~~~dlvIlPGsk~t~~DL~~lr~~g~d~-~i~~~~~~~~~viGICGG~ 335 (486)
T COG1492 276 DVRVRFVKPGSD-------LRDADLVILPGSKNTIADLKILREGGMDE-KILEYARKGGDVIGICGGY 335 (486)
T ss_pred CeEEEEeccCCC-------CCCCCEEEeCCCcccHHHHHHHHHcCHHH-HHHHHHhCCCCEEEEcchH
Confidence 566666654322 33478999999875 44455555555444 4555555578999999983
No 115
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=87.00 E-value=0.41 Score=38.72 Aligned_cols=46 Identities=11% Similarity=0.047 Sum_probs=30.1
Q ss_pred HHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCcc
Q 028817 140 LKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDVV 188 (203)
Q Consensus 140 Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~~ 188 (203)
++..|.|+++||.... .....+.+.+...+...+ ..+|.+||.|+.
T Consensus 62 ~~~~D~liipGg~~~~--~~~~~~~l~~~l~~~~~~-~~~i~aic~g~~ 107 (187)
T cd03137 62 LAAADTVIVPGGPDVD--GRPPPPALLAALRRAAAR-GARVASVCTGAF 107 (187)
T ss_pred cCCCCEEEECCCcccc--cccCCHHHHHHHHHHHhc-CCEEEEECHHHH
Confidence 4578999999996432 233345555555555533 349999999863
No 116
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=86.30 E-value=0.24 Score=39.16 Aligned_cols=46 Identities=11% Similarity=0.143 Sum_probs=26.9
Q ss_pred HHhcCEEEeCCCCC-CCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 140 LKLVNGVLLTGGWA-KKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 140 Ld~VDGVLLTGG~D-VdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
.+..|+|+|+||.. .+--..+ .+.+.+.+.+...+ .-||-+||.|.
T Consensus 35 ~~~yDalilpGG~~~~~~l~~~-~~~l~~~~~~~~~~-~k~iaaIC~g~ 81 (147)
T PF01965_consen 35 PSDYDALILPGGHGGADDLRTD-SKDLLELLKEFYEA-GKPIAAICHGP 81 (147)
T ss_dssp GGGESEEEEE-BTHHHHHHTTC-HHHHHHHHHHHHHT-T-EEEEETTCH
T ss_pred hhhCCEEEECCCCchhhhHhhH-HHHHHHHHHHHHHc-CCeEEecCCCc
Confidence 34589999999975 2211111 24444444444433 46999999997
No 117
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=85.91 E-value=0.97 Score=36.44 Aligned_cols=43 Identities=16% Similarity=0.029 Sum_probs=26.8
Q ss_pred HhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 141 KLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 141 d~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
+..|.|+++||.+.+ +. ..+.+.+...+.. +...+|.+||.|.
T Consensus 59 ~~~D~l~I~Gg~~~~--~~-~~~~l~~~l~~~~-~~~~~i~aic~G~ 101 (170)
T cd03140 59 EDYDLLILPGGDSWD--NP-EAPDLAGLVRQAL-KQGKPVAAICGAT 101 (170)
T ss_pred hHccEEEEcCCcccc--cC-CcHHHHHHHHHHH-HcCCEEEEEChHH
Confidence 567999999997522 22 2333444333333 4446999999875
No 118
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=85.29 E-value=6.1 Score=37.51 Aligned_cols=95 Identities=20% Similarity=0.270 Sum_probs=53.8
Q ss_pred CCCCEEEEcCCCCCCC-CCCCCCCCCchhhhHH-HHH-HHHHCCCeEEEeecCCC-HH----HHHHHHHhcCEEEeCCCC
Q 028817 81 NNRPVIGILSHPGDGA-SGRLNNSKNASYIAAS-YVK-FVESAGARVIPLIYNEP-EE----ILFEKLKLVNGVLLTGGW 152 (203)
Q Consensus 81 ~~rPVIGIta~~~~~~-~~~~~~~~~~syI~~s-YVk-aVe~AGA~PV~LP~~~~-~e----~l~~~Ld~VDGVLLTGG~ 152 (203)
.+||.|||.+.-.+-- .+.... ...-|-.++ .+. .++++|+.++-+-...+ .+ .+++.++.+|-|+.+||.
T Consensus 174 ~rkprV~IisTGdELv~~~~~l~-~gqI~dsN~~~l~a~l~~~G~e~~~~giv~Dd~~~l~~~i~~a~~~~DviItsGG~ 252 (404)
T COG0303 174 YRKPRVAIISTGDELVEPGQPLE-PGQIYDSNSYMLAALLERAGGEVVDLGIVPDDPEALREAIEKALSEADVIITSGGV 252 (404)
T ss_pred ecCCEEEEEecCccccCCCCCCC-CCeEEecCHHHHHHHHHHcCCceeeccccCCCHHHHHHHHHHhhhcCCEEEEeCCc
Confidence 5689999876532211 110111 112222233 334 36889999988877543 34 344555669999999998
Q ss_pred CCCCcChHHHHHHHHHHHHHHhCCCCcceEe
Q 028817 153 AKKGLYFQIVEKIFKHEAIYERKKQSLVHGI 183 (203)
Q Consensus 153 DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gi 183 (203)
.+.- .++++.+++. ..|+.-+|||
T Consensus 253 SvG~------~D~v~~~l~~-~lG~v~~~gi 276 (404)
T COG0303 253 SVGD------ADYVKAALER-ELGEVLFHGV 276 (404)
T ss_pred cCcc------hHhHHHHHHh-cCCcEEEEee
Confidence 7642 3445555543 2344456655
No 119
>PRK04155 chaperone protein HchA; Provisional
Probab=85.26 E-value=8.2 Score=34.89 Aligned_cols=42 Identities=10% Similarity=0.140 Sum_probs=25.1
Q ss_pred HhcCEEEeCCCCCCCCcChH---HHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 141 KLVNGVLLTGGWAKKGLYFQ---IVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 141 d~VDGVLLTGG~DVdP~yY~---~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
+..|+|+|+||.--. ..+. .+..|.+.+. +.+-+|-+||-|.
T Consensus 146 ~dYDaV~iPGG~g~~-~dL~~~~~l~~ll~~~~----~~~K~VaAICHGP 190 (287)
T PRK04155 146 SDYAAVFIPGGHGAL-IGLPESEDVAAALQWAL----DNDRFIITLCHGP 190 (287)
T ss_pred ccccEEEECCCCchH-HHHhhCHHHHHHHHHHH----HcCCEEEEEChHH
Confidence 577999999995210 1122 2344444333 2335999999886
No 120
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=85.20 E-value=0.91 Score=37.00 Aligned_cols=48 Identities=8% Similarity=-0.041 Sum_probs=29.6
Q ss_pred HHhcCEEEeCCCCCCCCc-ChHHHHHHHHHHHHHHhCCCCcceEeeCCcc
Q 028817 140 LKLVNGVLLTGGWAKKGL-YFQIVEKIFKHEAIYERKKQSLVHGITGDVV 188 (203)
Q Consensus 140 Ld~VDGVLLTGG~DVdP~-yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~~ 188 (203)
.+..|.|+++||..-... .+.....+.+...+... ...+|.+||.|..
T Consensus 67 ~~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~-~~~~i~aic~G~~ 115 (195)
T cd03138 67 VPAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHA-NGATVAAACTGVF 115 (195)
T ss_pred cCCCCEEEECCCcCCchhhhhhccHHHHHHHHHHHH-cCCEEEEecHHHH
Confidence 356799999998642221 33334445555444443 3359999999864
No 121
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=84.15 E-value=1.1 Score=36.36 Aligned_cols=42 Identities=10% Similarity=0.092 Sum_probs=29.1
Q ss_pred HHhcCEEEeCCC-CC---CCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 140 LKLVNGVLLTGG-WA---KKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 140 Ld~VDGVLLTGG-~D---VdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
.+..|.|+++|| .. ..+. +.+.+.+.+..++ .-+|.+||.|.
T Consensus 64 ~~~ydal~ipGG~~~~~~~~~~-----~~~~~~v~~~~~~-~k~vaaIC~g~ 109 (188)
T COG0693 64 AADYDALVIPGGDHGPEYLRPD-----PDLLAFVRDFYAN-GKPVAAICHGP 109 (188)
T ss_pred HhHCCEEEECCCccchhhccCc-----HHHHHHHHHHHHc-CCEEEEEChhH
Confidence 468899999999 43 2222 5555555555554 46999999986
No 122
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=84.05 E-value=1.2 Score=38.06 Aligned_cols=47 Identities=6% Similarity=0.008 Sum_probs=29.7
Q ss_pred HHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCcc
Q 028817 140 LKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDVV 188 (203)
Q Consensus 140 Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~~ 188 (203)
++..|+|+++||...... +...+.+.+.+.+...+ .-+|.+||.|++
T Consensus 88 ~~~~dal~ipGG~~~~~~-l~~~~~l~~~l~~~~~~-~k~iaaIC~g~~ 134 (221)
T cd03141 88 PSDYDAIFIPGGHGPMFD-LPDNPDLQDLLREFYEN-GKVVAAVCHGPA 134 (221)
T ss_pred HhHceEEEECCCcccccc-cccCHHHHHHHHHHHHc-CCEEEEEcchHH
Confidence 457899999999642111 22334455555554433 349999999873
No 123
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=83.81 E-value=7.3 Score=33.96 Aligned_cols=76 Identities=22% Similarity=0.205 Sum_probs=52.8
Q ss_pred hHHHHHHHHHCCCeE-EEeecCCCHHHHHHHHHhcCEEEe------CCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceE
Q 028817 110 AASYVKFVESAGARV-IPLIYNEPEEILFEKLKLVNGVLL------TGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHG 182 (203)
Q Consensus 110 ~~sYVkaVe~AGA~P-V~LP~~~~~e~l~~~Ld~VDGVLL------TGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~G 182 (203)
....++.++++|.++ |.|-+..+.+.++.+++.+|.|++ -||+...|.-++.++.+-++..+. +-.-...
T Consensus 99 ~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~---~~~~~Ie 175 (223)
T PRK08745 99 VHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDAL---GKPIRLE 175 (223)
T ss_pred HHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhc---CCCeeEE
Confidence 356778899999888 777776788999999999999998 446777777777666555544332 2123345
Q ss_pred eeCCcc
Q 028817 183 ITGDVV 188 (203)
Q Consensus 183 ic~~~~ 188 (203)
+=||+=
T Consensus 176 VDGGI~ 181 (223)
T PRK08745 176 IDGGVK 181 (223)
T ss_pred EECCCC
Confidence 556653
No 124
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=83.12 E-value=6.6 Score=34.49 Aligned_cols=60 Identities=13% Similarity=0.147 Sum_probs=45.9
Q ss_pred HHHHHHHHHCCCeE-EEeecCCCHHHHHHHHHhcCEEEe------CCCCCCCCcChHHHHHHHHHHH
Q 028817 111 ASYVKFVESAGARV-IPLIYNEPEEILFEKLKLVNGVLL------TGGWAKKGLYFQIVEKIFKHEA 170 (203)
Q Consensus 111 ~sYVkaVe~AGA~P-V~LP~~~~~e~l~~~Ld~VDGVLL------TGG~DVdP~yY~~~~~I~~~AL 170 (203)
...++.+.++|.++ |.|-+..+.+.++.+|+.+|-|++ -||+...|.-++.++.+-++..
T Consensus 98 ~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~ 164 (229)
T PRK09722 98 FRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTVDPGFAGQPFIPEMLDKIAELKALRE 164 (229)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHH
Confidence 45678889999888 777776788999999999999998 3466777777766666555543
No 125
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=83.08 E-value=1.1 Score=34.90 Aligned_cols=74 Identities=11% Similarity=0.052 Sum_probs=40.6
Q ss_pred HHHHHHHHCCCeEEEeecCCC------------HHHHHHH-HHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCC
Q 028817 112 SYVKFVESAGARVIPLIYNEP------------EEILFEK-LKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQS 178 (203)
Q Consensus 112 sYVkaVe~AGA~PV~LP~~~~------------~e~l~~~-Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~ 178 (203)
...+.++.+|..+.++-.... ...+++. .+..|.|+++||......+ ...+.+.+...+...+ .-
T Consensus 19 ~~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~~-~~~~~l~~~l~~~~~~-~~ 96 (142)
T cd03132 19 ALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFAL-APSGRALHFVTEAFKH-GK 96 (142)
T ss_pred HHHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCCccCHHHH-ccChHHHHHHHHHHhc-CC
Confidence 444556677777666653211 0112221 2357999999997542221 2223444444444433 24
Q ss_pred cceEeeCCc
Q 028817 179 LVHGITGDV 187 (203)
Q Consensus 179 PV~Gic~~~ 187 (203)
+|-+||.|+
T Consensus 97 ~I~aic~G~ 105 (142)
T cd03132 97 PIGAVGEGS 105 (142)
T ss_pred eEEEcCchH
Confidence 999999986
No 126
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=82.97 E-value=11 Score=33.39 Aligned_cols=61 Identities=21% Similarity=0.075 Sum_probs=39.7
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHH----HHHHH-hcCEEEeCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEIL----FEKLK-LVNGVLLTGG 151 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l----~~~Ld-~VDGVLLTGG 151 (203)
+..||+.....+. ..++-+.+...+++++.|-.+++.....+.+.. +.+++ ++|||++.+.
T Consensus 25 ~~~Ig~i~~~~~~--------~f~~~~~~gi~~~a~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vDGiIi~~~ 90 (330)
T PRK10355 25 EVKIGMAIDDLRL--------ERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPY 90 (330)
T ss_pred CceEEEEecCCCc--------hHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 6788987753321 244556677777888889888877665444323 33333 8999999864
No 127
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=82.97 E-value=25 Score=28.89 Aligned_cols=44 Identities=23% Similarity=0.257 Sum_probs=27.7
Q ss_pred HHH-HHHHCCCeEEEeecC-CCHHHHHHHH------HhcCEEEeCCCCCCCC
Q 028817 113 YVK-FVESAGARVIPLIYN-EPEEILFEKL------KLVNGVLLTGGWAKKG 156 (203)
Q Consensus 113 YVk-aVe~AGA~PV~LP~~-~~~e~l~~~L------d~VDGVLLTGG~DVdP 156 (203)
+++ .+++.|+.++..... ++.+.+.+.+ +.+|-||.|||.-+.+
T Consensus 26 ~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g~ 77 (163)
T TIGR02667 26 YLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTGFTG 77 (163)
T ss_pred HHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCC
Confidence 344 378889887655443 3444444443 2589999999975544
No 128
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=82.90 E-value=3.9 Score=35.56 Aligned_cols=44 Identities=11% Similarity=0.096 Sum_probs=27.0
Q ss_pred HhcCEEEeCCCCCCCCc-ChHHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 141 KLVNGVLLTGGWAKKGL-YFQIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 141 d~VDGVLLTGG~DVdP~-yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
+..|+|+++||.- +. .+...+.+-+++.+...+| -||-.||-|.
T Consensus 95 ~dYDav~iPGG~g--~~~dl~~~~~l~~ll~~f~~~g-K~VaAICHGp 139 (232)
T cd03148 95 SEYAAVFIPGGHG--ALIGIPESQDVAAALQWAIKND-RFVITLCHGP 139 (232)
T ss_pred hhceEEEECCCCC--ChhhcccCHHHHHHHHHHHHcC-CEEEEECcHH
Confidence 5789999999942 21 1333333444444444333 3999999886
No 129
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=82.73 E-value=1 Score=36.02 Aligned_cols=47 Identities=19% Similarity=0.228 Sum_probs=28.0
Q ss_pred HHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCcc
Q 028817 140 LKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDVV 188 (203)
Q Consensus 140 Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~~ 188 (203)
.+..|.|+++||.. ....+.....+.+...+... ...+|.+||.|+.
T Consensus 61 ~~~~D~l~v~Gg~~-~~~~~~~~~~l~~~l~~~~~-~~~~i~~ic~G~~ 107 (179)
T TIGR01383 61 LEEFDAIVLPGGMP-GAENLRNSKLLLNILKKQES-KGKLVAAICAAPA 107 (179)
T ss_pred cccCCEEEECCCch-HHHHHhhCHHHHHHHHHHHH-CCCEEEEEChhHH
Confidence 45689999999852 11112223344444444443 3359999999863
No 130
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=82.07 E-value=1.2 Score=34.83 Aligned_cols=45 Identities=18% Similarity=0.252 Sum_probs=27.2
Q ss_pred HhcCEEEeCCCC-CCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCcc
Q 028817 141 KLVNGVLLTGGW-AKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDVV 188 (203)
Q Consensus 141 d~VDGVLLTGG~-DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~~ 188 (203)
+..|.|+++||. .. ......+.+.+...+... ..-+|.+||.|+.
T Consensus 59 ~~~D~liipGg~~~~--~~~~~~~~l~~~l~~~~~-~~~~i~~ic~g~~ 104 (163)
T cd03135 59 DDYDAIVIPGGLPGA--QNLADNEKLIKLLKEFNA-KGKLIAAICAAPA 104 (163)
T ss_pred CCCCEEEECCCCchH--HHHHhCHHHHHHHHHHHH-cCCEEEEEchhHH
Confidence 567999999996 31 112223344444444443 3348999999863
No 131
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=81.80 E-value=12 Score=35.39 Aligned_cols=76 Identities=14% Similarity=0.113 Sum_probs=42.2
Q ss_pred CCCCEEEEcCCCCCC-CCCCCCCCCCchhhhHHHHHH-HHHCCCeEEEeecC-CCHHHHHHHH----HhcCEEEeCCCCC
Q 028817 81 NNRPVIGILSHPGDG-ASGRLNNSKNASYIAASYVKF-VESAGARVIPLIYN-EPEEILFEKL----KLVNGVLLTGGWA 153 (203)
Q Consensus 81 ~~rPVIGIta~~~~~-~~~~~~~~~~~syI~~sYVka-Ve~AGA~PV~LP~~-~~~e~l~~~L----d~VDGVLLTGG~D 153 (203)
.+||.|||.+.-.+- ..+.........-....++++ +++.|+.++..... ++.+.+.+.+ +.+|-||.|||..
T Consensus 191 ~~~prV~IisTGdEl~~~g~~~~~g~i~dsN~~~L~a~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIItTGG~S 270 (419)
T PRK14690 191 RRPLRVAVLSTGDELVEPGALAEVGQIYDANRPMLLALARRWGHAPVDLGRVGDDRAALAARLDRAAAEADVILTSGGAS 270 (419)
T ss_pred ecCCEEEEEEccccccCCCCCCCCCeEEeCHHHHHHHHHHHCCCEEEEEeeeCCCHHHHHHHHHHhCccCCEEEEcCCcc
Confidence 458999986542111 111101111111233445554 78899988765543 3445555444 5689999999987
Q ss_pred CCC
Q 028817 154 KKG 156 (203)
Q Consensus 154 VdP 156 (203)
+.+
T Consensus 271 ~G~ 273 (419)
T PRK14690 271 AGD 273 (419)
T ss_pred CCC
Confidence 654
No 132
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=81.74 E-value=4.6 Score=34.97 Aligned_cols=64 Identities=13% Similarity=0.016 Sum_probs=36.9
Q ss_pred HHHHHHCCCeEEEeecCCCHHHHHHHH-HhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeC
Q 028817 114 VKFVESAGARVIPLIYNEPEEILFEKL-KLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITG 185 (203)
Q Consensus 114 VkaVe~AGA~PV~LP~~~~~e~l~~~L-d~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~ 185 (203)
++.+...|+.+.++.-+. .+ ++++- ..-|+|+++=|.- +|.-++.- ..++++. .++.||+|||=
T Consensus 18 v~yl~~lg~~v~V~rnd~-~~-~~~~~~~~pd~iviSPGPG-~P~d~G~~----~~~i~~~-~~~~PiLGVCL 82 (191)
T COG0512 18 VQYLRELGAEVTVVRNDD-IS-LELIEALKPDAIVISPGPG-TPKDAGIS----LELIRRF-AGRIPILGVCL 82 (191)
T ss_pred HHHHHHcCCceEEEECCc-cC-HHHHhhcCCCEEEEcCCCC-ChHHcchH----HHHHHHh-cCCCCEEEECc
Confidence 345667788888887641 11 11122 2269999987763 24423222 2233333 67789999993
No 133
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=80.95 E-value=11 Score=33.19 Aligned_cols=75 Identities=16% Similarity=0.176 Sum_probs=52.1
Q ss_pred hHHHHHHHHHCCC--eE-EEeecCCCHHHHHHHHHhcCEEEe------CCCCCCCCcChHHHHHHHHHHHHHHhCCCCcc
Q 028817 110 AASYVKFVESAGA--RV-IPLIYNEPEEILFEKLKLVNGVLL------TGGWAKKGLYFQIVEKIFKHEAIYERKKQSLV 180 (203)
Q Consensus 110 ~~sYVkaVe~AGA--~P-V~LP~~~~~e~l~~~Ld~VDGVLL------TGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV 180 (203)
....++.+.++|. ++ |.|-+..+.+.++.+++.+|-|++ -||+...+.-++.++.+-++..+. |-.-.
T Consensus 105 ~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~---~~~~~ 181 (228)
T PRK08091 105 LALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNR---RVEKL 181 (228)
T ss_pred HHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhc---CCCce
Confidence 3566788899997 66 777766788999999999999998 446777777777776665554332 22233
Q ss_pred eEeeCCc
Q 028817 181 HGITGDV 187 (203)
Q Consensus 181 ~Gic~~~ 187 (203)
..+=||+
T Consensus 182 IeVDGGI 188 (228)
T PRK08091 182 ISIDGSM 188 (228)
T ss_pred EEEECCC
Confidence 4555554
No 134
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=80.79 E-value=6.4 Score=30.61 Aligned_cols=86 Identities=22% Similarity=0.257 Sum_probs=52.6
Q ss_pred EEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCC------------------CHHHHHHHHHhcCEE
Q 028817 85 VIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNE------------------PEEILFEKLKLVNGV 146 (203)
Q Consensus 85 VIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~------------------~~e~l~~~Ld~VDGV 146 (203)
|++|.++++.. .....+.+...+.+++.|+.+-++...+ +.+.+.+.+...|||
T Consensus 3 ilii~gS~r~~--------~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~i 74 (152)
T PF03358_consen 3 ILIINGSPRKN--------SNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGI 74 (152)
T ss_dssp EEEEESSSSTT--------SHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEE
T ss_pred EEEEECcCCCC--------CHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeE
Confidence 66777776531 1333455555566777788776665432 124567788999999
Q ss_pred EeCCCCCCCCcChHHHHHHHHHHHHHHh---C---CCCcceEe
Q 028817 147 LLTGGWAKKGLYFQIVEKIFKHEAIYER---K---KQSLVHGI 183 (203)
Q Consensus 147 LLTGG~DVdP~yY~~~~~I~~~AL~~n~---~---g~~PV~Gi 183 (203)
+| ..|.|++...-.+|..+++-. . .+-|+..+
T Consensus 75 I~-----~sP~y~~~~s~~lK~~lD~~~~~~~~~~~~K~~~~i 112 (152)
T PF03358_consen 75 IF-----ASPVYNGSVSGQLKNFLDRLSCWFRRALRGKPVAII 112 (152)
T ss_dssp EE-----EEEEBTTBE-HHHHHHHHTHHHTHTTTTTTSEEEEE
T ss_pred EE-----eecEEcCcCChhhhHHHHHhccccccccCCCEEEEE
Confidence 99 568898765555555555442 2 22266666
No 135
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=80.56 E-value=1.8 Score=35.56 Aligned_cols=45 Identities=16% Similarity=0.205 Sum_probs=27.6
Q ss_pred HhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 141 KLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 141 d~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
+..|.|+++||..- +..+...+.+.+...+... ..-+|.+||.|.
T Consensus 65 ~~~D~l~ipGG~~~-~~~~~~~~~l~~~L~~~~~-~g~~v~aic~G~ 109 (196)
T PRK11574 65 GDFDVIVLPGGIKG-AECFRDSPLLVETVRQFHR-SGRIVAAICAAP 109 (196)
T ss_pred CCCCEEEECCCCch-hhhhhhCHHHHHHHHHHHH-CCCEEEEECHhH
Confidence 46899999998531 1112223345554444443 335999999998
No 136
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=80.46 E-value=1.8 Score=37.68 Aligned_cols=46 Identities=11% Similarity=0.004 Sum_probs=28.4
Q ss_pred HHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 140 LKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 140 Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
.+..|+|+|+||..-... +...+.+-++..+...+| -||-+||=|.
T Consensus 92 ~~dYDav~iPGG~g~~~d-l~~~~~l~~ll~~f~~~g-K~iaAIChgp 137 (231)
T cd03147 92 PDDYGIFFVAGGHGTLFD-FPHATNLQKIAQQIYANG-GVVAAVCHGP 137 (231)
T ss_pred HhhCcEEEECCCCchhhh-cccCHHHHHHHHHHHHcC-CEEEEEChHH
Confidence 567899999999532112 222333444444444443 5999999886
No 137
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=79.68 E-value=5 Score=32.99 Aligned_cols=61 Identities=23% Similarity=0.257 Sum_probs=32.9
Q ss_pred CCCCCC-CCCCCCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHH
Q 028817 72 SPAATD-RRLNNRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKLK 141 (203)
Q Consensus 72 ~~~~~~-~~~~~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld 141 (203)
|.-+|- ....+||||||.+-..... .... + +.=.++++.||+.-+..-...+.+-++++.+
T Consensus 78 ~~~pP~fa~~f~~pvIGVITK~Dl~~-------~~~~-i-~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~ 139 (143)
T PF10662_consen 78 SVFPPGFASMFNKPVIGVITKIDLPS-------DDAN-I-ERAKKWLKNAGVKEIFEVSAVTGEGIEELKD 139 (143)
T ss_pred ccCCchhhcccCCCEEEEEECccCcc-------chhh-H-HHHHHHHHHcCCCCeEEEECCCCcCHHHHHH
Confidence 443443 4556799999998875321 0111 1 1222578889998763333333344444443
No 138
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=79.46 E-value=10 Score=33.54 Aligned_cols=75 Identities=17% Similarity=0.192 Sum_probs=54.4
Q ss_pred HHHHHHHHHCCCeE-EEeecCCCHHHHHHHHHhcCEEEeC------CCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEe
Q 028817 111 ASYVKFVESAGARV-IPLIYNEPEEILFEKLKLVNGVLLT------GGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGI 183 (203)
Q Consensus 111 ~sYVkaVe~AGA~P-V~LP~~~~~e~l~~~Ld~VDGVLLT------GG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gi 183 (203)
..-++.|++.|+++ |.|.+..+.+.++.+|+.+|.|++= ||+..-|.-.+..+.+-++..+ +| ....-+
T Consensus 99 ~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~---~~-~~~IeV 174 (220)
T COG0036 99 HRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDE---RL-DILIEV 174 (220)
T ss_pred HHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcc---cC-CeEEEE
Confidence 45567788889888 7777777889999999999999982 4677777777777666665554 33 555566
Q ss_pred eCCccc
Q 028817 184 TGDVVQ 189 (203)
Q Consensus 184 c~~~~~ 189 (203)
=||.=+
T Consensus 175 DGGI~~ 180 (220)
T COG0036 175 DGGINL 180 (220)
T ss_pred eCCcCH
Confidence 666543
No 139
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=79.38 E-value=1.5 Score=35.10 Aligned_cols=44 Identities=9% Similarity=0.064 Sum_probs=26.8
Q ss_pred HhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 141 KLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 141 d~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
...|.|+++||... ......+.+.+...+... ...+|.+||.|+
T Consensus 61 ~~~D~lvipgg~~~--~~~~~~~~~~~~l~~~~~-~~k~i~aic~g~ 104 (183)
T cd03139 61 PDLDVLLVPGGGGT--RALVNDPALLDFIRRQAA-RAKYVTSVCTGA 104 (183)
T ss_pred CCCCEEEECCCcch--hhhccCHHHHHHHHHhcc-cCCEEEEEchHH
Confidence 36799999999642 222223344444444443 334999999975
No 140
>PRK08005 epimerase; Validated
Probab=78.08 E-value=8.4 Score=33.39 Aligned_cols=56 Identities=11% Similarity=0.041 Sum_probs=42.1
Q ss_pred HHHHHHHHHCCCeE-EEeecCCCHHHHHHHHHhcCEEEe------CCCCCCCCcChHHHHHHH
Q 028817 111 ASYVKFVESAGARV-IPLIYNEPEEILFEKLKLVNGVLL------TGGWAKKGLYFQIVEKIF 166 (203)
Q Consensus 111 ~sYVkaVe~AGA~P-V~LP~~~~~e~l~~~Ld~VDGVLL------TGG~DVdP~yY~~~~~I~ 166 (203)
...++.++++|.++ |.|-+..+.+.++.+++.+|.|++ -||+...|.-++.++.+-
T Consensus 96 ~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~ 158 (210)
T PRK08005 96 SEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDGRGQQFIAAMCEKVSQSR 158 (210)
T ss_pred HHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEEecCCCccceecHHHHHHHHHHH
Confidence 45678899999888 777776788999999999999998 346666666555555443
No 141
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=78.08 E-value=3.1 Score=37.02 Aligned_cols=68 Identities=16% Similarity=0.183 Sum_probs=39.7
Q ss_pred HHHHHHHHHCCCeEEEeecCC----CHHHHHHHHHhcCEEEeCCCCC--C-CCcChHHHHHHHHHHHHHHhCCCCcceEe
Q 028817 111 ASYVKFVESAGARVIPLIYNE----PEEILFEKLKLVNGVLLTGGWA--K-KGLYFQIVEKIFKHEAIYERKKQSLVHGI 183 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~----~~e~l~~~Ld~VDGVLLTGG~D--V-dP~yY~~~~~I~~~AL~~n~~g~~PV~Gi 183 (203)
..++..+..-|-.-=...... ..++ |+..||+++||+.. . +-.+-..-..+.++.+.++ .+|+||
T Consensus 28 nvfvsllg~ege~wd~frV~~gefP~~~D----l~ky~gfvIsGS~~dAf~d~dWI~KLcs~~kkld~mk----kkvlGI 99 (245)
T KOG3179|consen 28 NVFVSLLGDEGEQWDLFRVIDGEFPQEED----LEKYDGFVISGSKHDAFSDADWIKKLCSFVKKLDFMK----KKVLGI 99 (245)
T ss_pred HHHHHHhcccCceeEEEEEecCCCCChhh----hhhhceEEEeCCcccccccchHHHHHHHHHHHHHhhc----cceEEE
Confidence 445555655565443333322 2233 66689999999863 1 2333344455555555555 799999
Q ss_pred eCC
Q 028817 184 TGD 186 (203)
Q Consensus 184 c~~ 186 (203)
|=|
T Consensus 100 CFG 102 (245)
T KOG3179|consen 100 CFG 102 (245)
T ss_pred ecc
Confidence 954
No 142
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=77.80 E-value=1.7 Score=34.49 Aligned_cols=46 Identities=7% Similarity=-0.034 Sum_probs=27.4
Q ss_pred HHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCcc
Q 028817 140 LKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDVV 188 (203)
Q Consensus 140 Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~~ 188 (203)
....|.|+++||... .--.....+.+...+.. +..-.|.+||+|++
T Consensus 59 ~~~~D~lvvpg~~~~--~~~~~~~~l~~~l~~~~-~~~~~i~aic~G~~ 104 (166)
T PF13278_consen 59 APDFDILVVPGGPGF--DAAAKDPALLDWLRQQH-AQGTYIAAICTGAL 104 (166)
T ss_dssp CSCCSEEEEE-STTH--HHHTT-HHHHHHHHHHH-CCTSEEEEETTHHH
T ss_pred cccCCEEEeCCCCCc--hhcccCHHHHHHhhhhh-ccceEEeeeehHHH
Confidence 667899999999881 11111233444333444 33369999999974
No 143
>PRK13017 dihydroxy-acid dehydratase; Provisional
Probab=77.56 E-value=16 Score=36.70 Aligned_cols=94 Identities=18% Similarity=0.246 Sum_probs=56.5
Q ss_pred CCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCC------------CHHHHHHHH------Hhc
Q 028817 82 NRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNE------------PEEILFEKL------KLV 143 (203)
Q Consensus 82 ~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~------------~~e~l~~~L------d~V 143 (203)
+||+|||.....+..+. .....-+.+.--+.|+++|+.|+-++... +.+.+.+-+ ..+
T Consensus 46 ~KP~IgI~ns~se~~Pc----h~hl~~la~~vk~gI~~aGG~p~ef~ti~v~d~~~~~~~l~sRelIAd~iE~~~~a~~~ 121 (596)
T PRK13017 46 GKPIIGIAQTGSDLSPC----NRHHLELAERVKEGIRDAGGIPMEFPVHPIQETGKRPTAALDRNLAYLGLVEILYGYPL 121 (596)
T ss_pred CCCEEEEEecccCCcCc----hhhHHHHHHHHHHHHHHcCCeeEecccccccccCCCcccccCHHHHHHHHHHHHhcCCc
Confidence 79999998776543221 11222233333346899999999887631 223222222 358
Q ss_pred CEEEeCCCCCC-CCcChHHHHHHHHHHHHHHhCCCCcceEeeCCcccc
Q 028817 144 NGVLLTGGWAK-KGLYFQIVEKIFKHEAIYERKKQSLVHGITGDVVQK 190 (203)
Q Consensus 144 DGVLLTGG~DV-dP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~~~~ 190 (203)
||+++.||=|+ -|... + -|...| .|-.-++||+..-
T Consensus 122 Dg~V~i~gCDK~~PG~l------M-aaarln----iP~i~v~GG~m~~ 158 (596)
T PRK13017 122 DGVVLTTGCDKTTPACL------M-AAATVD----LPAIVLSGGPMLD 158 (596)
T ss_pred ceEEEeccCCCccHHHH------H-HHHhcC----CCEEEEeCCCcCC
Confidence 99999999883 44321 1 233333 6888888887643
No 144
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=76.53 E-value=28 Score=29.72 Aligned_cols=22 Identities=32% Similarity=0.256 Sum_probs=15.0
Q ss_pred HHHHHH--hcCEEEeCCCCCCCCc
Q 028817 136 LFEKLK--LVNGVLLTGGWAKKGL 157 (203)
Q Consensus 136 l~~~Ld--~VDGVLLTGG~DVdP~ 157 (203)
+.+.++ .+|-||.|||.-+.+.
T Consensus 58 L~~a~~~~~~DlIITTGGtg~g~r 81 (193)
T PRK09417 58 LIELVDEMGCDLVLTTGGTGPARR 81 (193)
T ss_pred HHHHhhcCCCCEEEECCCCCCCCC
Confidence 344443 5899999999755443
No 145
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=76.40 E-value=1.9 Score=34.84 Aligned_cols=44 Identities=11% Similarity=0.205 Sum_probs=28.3
Q ss_pred HhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCcc
Q 028817 141 KLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDVV 188 (203)
Q Consensus 141 d~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~~ 188 (203)
...|.|+++||.... ....+.+.+...+..++ .-.|.+||.|++
T Consensus 63 ~~~D~liipgg~~~~---~~~~~~~~~~l~~~~~~-~~~i~aic~g~~ 106 (185)
T cd03136 63 PPLDYLFVVGGLGAR---RAVTPALLAWLRRAARR-GVALGGIDTGAF 106 (185)
T ss_pred CCCCEEEEeCCCCcc---ccCCHHHHHHHHHHHhc-CCEEEEEcHHHH
Confidence 467999999996533 33334455544444433 359999999874
No 146
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=76.37 E-value=16 Score=34.53 Aligned_cols=75 Identities=17% Similarity=0.191 Sum_probs=42.5
Q ss_pred CCCCEEEEcCCCCCC-CCCCCCCCCCchh-hhHHHHHH-HHHCCCeEEEeecC-CCHHHHHHHH----HhcCEEEeCCCC
Q 028817 81 NNRPVIGILSHPGDG-ASGRLNNSKNASY-IAASYVKF-VESAGARVIPLIYN-EPEEILFEKL----KLVNGVLLTGGW 152 (203)
Q Consensus 81 ~~rPVIGIta~~~~~-~~~~~~~~~~~sy-I~~sYVka-Ve~AGA~PV~LP~~-~~~e~l~~~L----d~VDGVLLTGG~ 152 (203)
.+||.|||.+.-.+- +.+.... ...-+ .....+++ +++.|+.++.+... ++.+.+.+.+ +.+|-||.|||.
T Consensus 175 ~~~prV~iistGdEl~~~~~~~~-~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DlvIttGG~ 253 (411)
T PRK10680 175 VRKVRVALFSTGDELQLPGQPLG-DGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGV 253 (411)
T ss_pred cCCCEEEEEccCCeEeCCCCCCC-CCEEEEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhccCCCEEEEcCCC
Confidence 468999996542110 0111011 11112 23334554 68899988766543 3455555544 458999999998
Q ss_pred CCCC
Q 028817 153 AKKG 156 (203)
Q Consensus 153 DVdP 156 (203)
.+.+
T Consensus 254 S~G~ 257 (411)
T PRK10680 254 SVGE 257 (411)
T ss_pred CCCC
Confidence 7655
No 147
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=74.81 E-value=2.4 Score=37.61 Aligned_cols=44 Identities=11% Similarity=0.190 Sum_probs=28.7
Q ss_pred HHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 140 LKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 140 Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
++..|.|+++||....- .....+.+...+... ..-.|.|||.|+
T Consensus 73 ~~~~D~livpGg~~~~~---~~~~~l~~~l~~~~~-~~~~i~aic~g~ 116 (322)
T PRK09393 73 LDRADTIVIPGWRGPDA---PVPEPLLEALRAAHA-RGARLCSICSGV 116 (322)
T ss_pred cCCCCEEEECCCCcccc---cCCHHHHHHHHHHHH-cCCEEEEEcHHH
Confidence 46789999999864322 124455555545443 334799999985
No 148
>PRK13016 dihydroxy-acid dehydratase; Provisional
Probab=74.68 E-value=14 Score=37.01 Aligned_cols=98 Identities=16% Similarity=0.125 Sum_probs=57.7
Q ss_pred CCCCCCCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCC------------CHHHHHHHH----
Q 028817 77 DRRLNNRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNE------------PEEILFEKL---- 140 (203)
Q Consensus 77 ~~~~~~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~------------~~e~l~~~L---- 140 (203)
+.++..||+|||.....+..+. .....-+.+.--+.|+++|+.|+-++... ..+.+.+-+
T Consensus 36 ~~d~~~KP~IgI~ns~se~~Pc----h~hL~~la~~Vk~gv~~aGG~P~ef~ti~v~Dgi~~g~sl~~RelIAdsiE~~~ 111 (577)
T PRK13016 36 PEDFDGKPVIAILNTWSDANPC----HGHFRERVEDVKRGVLQAGGFPLELPALSLSENFVKPTTMLYRNLLAMETEELI 111 (577)
T ss_pred HHHHhcCCEEEEEecccCCcCc----hhhHHHHHHHHHHHHHHcCCeeEecccccCcccccCCcccccHHHHHHHHHHHH
Confidence 3334479999998776543211 11222333443446889999998887531 123222222
Q ss_pred --HhcCEEEeCCCCC-CCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCccc
Q 028817 141 --KLVNGVLLTGGWA-KKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDVVQ 189 (203)
Q Consensus 141 --d~VDGVLLTGG~D-VdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~~~ 189 (203)
..+||+++-||=| +-|.. ++ -|...| .|-.-++||+..
T Consensus 112 ~a~~~Dg~V~l~~CDK~~Pg~------lM-aaarln----iPsI~v~GG~m~ 152 (577)
T PRK13016 112 RSHPVDGAVLMGGCDKTTPGL------VM-GAISMG----LPMIYLPAGPML 152 (577)
T ss_pred hcCCccceEEeccCCCCcHHH------HH-HHHhcC----CCEEEEecCCCC
Confidence 3589999999988 34432 22 233344 688888888754
No 149
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=73.83 E-value=20 Score=35.59 Aligned_cols=95 Identities=16% Similarity=0.141 Sum_probs=56.1
Q ss_pred CCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCC-----------------CHHHHHHH-----
Q 028817 82 NRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNE-----------------PEEILFEK----- 139 (203)
Q Consensus 82 ~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~-----------------~~e~l~~~----- 139 (203)
+||+|||.....+..+. .....-+.+.--+.|+++|+.|+.++... +.+.+.+-
T Consensus 10 ~kP~IgI~ns~~e~~pc----h~hl~~l~~~vk~gv~~aGg~p~ef~ti~v~Dgi~~g~~GM~ySL~SRelIAdsiE~~~ 85 (535)
T TIGR00110 10 GKPFIGVANSYTTIVPG----HMHLRDLAQAVKEGIEAAGGVAFEFNTIAVCDGIAMGHEGMKYSLPSREIIADSVETMV 85 (535)
T ss_pred CCCEEEEEeccccCcCc----hhhHHHHHHHHHHHHHHcCCeeEEecCCcCccccccCCcccchhhhhHHHHHHHHHHHH
Confidence 59999998876553211 11122233333336888999999987631 12222222
Q ss_pred -HHhcCEEEeCCCCCC-CCcChHHHHHHHHHHHHHHhCCCCcceEeeCCccccc
Q 028817 140 -LKLVNGVLLTGGWAK-KGLYFQIVEKIFKHEAIYERKKQSLVHGITGDVVQKD 191 (203)
Q Consensus 140 -Ld~VDGVLLTGG~DV-dP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~~~~~ 191 (203)
-..+||+++-||=|+ -|... =-|+..| .|..-+.||+.+--
T Consensus 86 ~~~~~Dg~v~l~~CDK~~PG~l-------Maaarln----iP~i~v~gGpm~~G 128 (535)
T TIGR00110 86 NAHRFDGLVCIPSCDKITPGML-------MAAARLN----IPSIFVTGGPMLPG 128 (535)
T ss_pred hcCCcceEEEeccCCCCcHHHH-------HHHHhcC----CCEEEEeCCCccCC
Confidence 246899999999883 44322 1233333 68888888876544
No 150
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=73.64 E-value=19 Score=35.77 Aligned_cols=94 Identities=15% Similarity=0.112 Sum_probs=55.0
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCC-----------------CHHH----HHHH
Q 028817 81 NNRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNE-----------------PEEI----LFEK 139 (203)
Q Consensus 81 ~~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~-----------------~~e~----l~~~ 139 (203)
.+||+|||.....+..+. .....-+.+.--+.|+++|+.|+-++... +.+. ++..
T Consensus 29 l~kP~IgI~ns~se~~Pc----h~hl~~la~~Vk~gi~~aGg~p~ef~ti~~~Dgi~~g~~GM~ysL~sReliA~~iE~~ 104 (552)
T PRK00911 29 FDKPFIGIANSWNEITPC----NIHLNELADAVKEGVRAAGGVPFEFNTIGVSDGIAMGHEGMKYSLVSREVIADSIETV 104 (552)
T ss_pred hcCCEEEEeccccccccc----hhhHHHHHHHHHHHHHHcCCEeEEeCCCccccccccCcccceehhhhHHHHHHHHHHH
Confidence 369999998776543211 11222233333336888999999887531 1222 2222
Q ss_pred --HHhcCEEEeCCCCCC-CCcChHHHHHHHHHHHHHHhCCCCcceEeeCCccc
Q 028817 140 --LKLVNGVLLTGGWAK-KGLYFQIVEKIFKHEAIYERKKQSLVHGITGDVVQ 189 (203)
Q Consensus 140 --Ld~VDGVLLTGG~DV-dP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~~~ 189 (203)
-..+||+++.||=|+ -|.. ++ -|+..| .|..-++||+..
T Consensus 105 ~~a~~~Dg~V~l~~CDK~~Pg~------lM-aaarln----iPsi~v~gGpm~ 146 (552)
T PRK00911 105 VNAHWFDGLVAIPGCDKNMPGM------LM-AAARLN----VPSIFVYGGPIL 146 (552)
T ss_pred hhCCCcceEEEeccCCCCcHHH------HH-HHHhcC----CCEEEEeCCCcC
Confidence 246899999999883 4432 12 133333 688888888754
No 151
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=73.62 E-value=5.7 Score=39.00 Aligned_cols=46 Identities=30% Similarity=0.543 Sum_probs=31.6
Q ss_pred HHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 135 ILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 135 ~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
...++|..+||||+|||-.... .+-+| .|.++-.+.+.|-+|||=|
T Consensus 356 ~aW~~l~~adGilvPGGFG~RG----veG~i--~Aak~ARen~iP~LGiCLG 401 (585)
T KOG2387|consen 356 AAWQKLKSADGILVPGGFGDRG----VEGKI--LAAKWARENKIPFLGICLG 401 (585)
T ss_pred HHHHHhccCCeEEeCCcccccc----hhHHH--HHHHHHHhcCCCeEeeehh
Confidence 4567899999999999975432 22222 3444444555699999977
No 152
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=73.35 E-value=18 Score=35.89 Aligned_cols=77 Identities=19% Similarity=0.168 Sum_probs=41.5
Q ss_pred CCCCEEEEcCCCCCC-CCCCCCCCCCchhhhHHHHHH-HHHCCCeEEEeecC-CCHHHHHH----HHHhcCEEEeCCCCC
Q 028817 81 NNRPVIGILSHPGDG-ASGRLNNSKNASYIAASYVKF-VESAGARVIPLIYN-EPEEILFE----KLKLVNGVLLTGGWA 153 (203)
Q Consensus 81 ~~rPVIGIta~~~~~-~~~~~~~~~~~syI~~sYVka-Ve~AGA~PV~LP~~-~~~e~l~~----~Ld~VDGVLLTGG~D 153 (203)
.+||.|||.+.-.+- ..+.........-....++++ +++.|+.++.+... ++.+.+.+ .++.+|-||.|||..
T Consensus 365 ~~~prV~IistGdEl~~~g~~~~~g~i~dsn~~~L~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIIttGG~s 444 (597)
T PRK14491 365 FRRPKVAVFSTGDEVQAPGETLKPNCIYDSNRFTIKAMAKKLGCEVIDLGIIEDSEAALEATLEQAAAQADVVISSGGVS 444 (597)
T ss_pred ccCCEEEEEecCCeeccCCCcCCCCcEEeCCHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhhcCCEEEEcCCcc
Confidence 458999987542211 111111111111123334443 78899988655443 34444444 446689999999976
Q ss_pred CCCc
Q 028817 154 KKGL 157 (203)
Q Consensus 154 VdP~ 157 (203)
+.+.
T Consensus 445 ~G~~ 448 (597)
T PRK14491 445 VGDA 448 (597)
T ss_pred CCCc
Confidence 6554
No 153
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=72.47 E-value=3.7 Score=35.18 Aligned_cols=74 Identities=22% Similarity=0.244 Sum_probs=47.9
Q ss_pred HHHHHHHHHCCCeE-EEeecCCCHHHHHHHHHhcCEEEeC------CCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEe
Q 028817 111 ASYVKFVESAGARV-IPLIYNEPEEILFEKLKLVNGVLLT------GGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGI 183 (203)
Q Consensus 111 ~sYVkaVe~AGA~P-V~LP~~~~~e~l~~~Ld~VDGVLLT------GG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gi 183 (203)
..-++.+.++|.++ |.|-+..+.+.++++++.+|.|++= ||+...|.-++..+.+-++..+.+ ..-...+
T Consensus 95 ~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~~~~~~---~~~~I~v 171 (201)
T PF00834_consen 95 KETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKLIPENG---LDFEIEV 171 (201)
T ss_dssp HHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS-TTTSSB--HGGHHHHHHHHHHHHHHHT---CGSEEEE
T ss_pred HHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEecCCCCcccccHHHHHHHHHHHHHHHhcC---CceEEEE
Confidence 34577888899887 6666666778899999999998884 345566666666666666555544 2344445
Q ss_pred eCCc
Q 028817 184 TGDV 187 (203)
Q Consensus 184 c~~~ 187 (203)
=||+
T Consensus 172 DGGI 175 (201)
T PF00834_consen 172 DGGI 175 (201)
T ss_dssp ESSE
T ss_pred ECCC
Confidence 5554
No 154
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=72.43 E-value=22 Score=29.41 Aligned_cols=61 Identities=16% Similarity=0.157 Sum_probs=46.7
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHH
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYE 173 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n 173 (203)
..-.+.++..|+..|...+. +.+.+.+.|+.+|.|++.-+..- +...+..+.+.+.|++++
T Consensus 34 ~~~~~~l~~~g~~vv~~d~~-~~~~l~~al~g~d~v~~~~~~~~-~~~~~~~~~li~Aa~~ag 94 (233)
T PF05368_consen 34 SDRAQQLQALGAEVVEADYD-DPESLVAALKGVDAVFSVTPPSH-PSELEQQKNLIDAAKAAG 94 (233)
T ss_dssp HHHHHHHHHTTTEEEES-TT--HHHHHHHHTTCSEEEEESSCSC-CCHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhcccceEeecccC-CHHHHHHHHcCCceEEeecCcch-hhhhhhhhhHHHhhhccc
Confidence 33456678899998877654 78889999999999999888654 666677788888888876
No 155
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=72.39 E-value=4.7 Score=39.68 Aligned_cols=42 Identities=31% Similarity=0.470 Sum_probs=24.7
Q ss_pred HHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 139 KLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 139 ~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
+...+||+|+|||--.. +.+-+| .|.+.-...+.|.+|||=|
T Consensus 340 ~~~~~dgIlVPGGFG~R----G~eGkI--~Ai~yAREn~iP~lGIClG 381 (533)
T COG0504 340 LEKLVDGILVPGGFGYR----GVEGKI--AAIRYARENNIPFLGICLG 381 (533)
T ss_pred hhhcCCEEEeCCCCCcC----chHHHH--HHHHHHHhcCCCEEEEchh
Confidence 33349999999997532 222222 1222222333599999977
No 156
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=71.96 E-value=30 Score=32.16 Aligned_cols=76 Identities=21% Similarity=0.198 Sum_probs=42.1
Q ss_pred CCCCEEEEcCCCCCC-CCCCCCCCCCchhhhHHHHHH-HHHCCCeEEEeecCC-CHHHH----HHHHHhcCEEEeCCCCC
Q 028817 81 NNRPVIGILSHPGDG-ASGRLNNSKNASYIAASYVKF-VESAGARVIPLIYNE-PEEIL----FEKLKLVNGVLLTGGWA 153 (203)
Q Consensus 81 ~~rPVIGIta~~~~~-~~~~~~~~~~~syI~~sYVka-Ve~AGA~PV~LP~~~-~~e~l----~~~Ld~VDGVLLTGG~D 153 (203)
.+||.|||.+.-.+- ..+.........-....++.+ +++.|+.++.+.... +.+.+ ++.++.+|=|+.|||..
T Consensus 166 ~~~~rv~ii~tGdEl~~~g~~~~~g~i~dsn~~~l~~~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DliittGG~s 245 (394)
T cd00887 166 YRRPRVAIISTGDELVEPGEPLAPGQIYDSNSYMLAALLRELGAEVVDLGIVPDDPEALREALEEALEEADVVITSGGVS 245 (394)
T ss_pred ecCCEEEEEeCCCcccCCCCCCCCCEEEEChHHHHHHHHHHCCCEEEEeceeCCCHHHHHHHHHHHhhCCCEEEEeCCCC
Confidence 458999987542111 001001111111233444554 677899887776543 33434 44555689999999987
Q ss_pred CCC
Q 028817 154 KKG 156 (203)
Q Consensus 154 VdP 156 (203)
+.+
T Consensus 246 ~g~ 248 (394)
T cd00887 246 VGD 248 (394)
T ss_pred CCc
Confidence 655
No 157
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional
Probab=71.60 E-value=20 Score=35.40 Aligned_cols=75 Identities=17% Similarity=0.292 Sum_probs=42.2
Q ss_pred CCCCEEEEcCCCCCC-CCCCCCCCCCchh-hhHHHHHH-HHHCCCeEEEeecC-CCHHHHHH----HHHhcCEEEeCCCC
Q 028817 81 NNRPVIGILSHPGDG-ASGRLNNSKNASY-IAASYVKF-VESAGARVIPLIYN-EPEEILFE----KLKLVNGVLLTGGW 152 (203)
Q Consensus 81 ~~rPVIGIta~~~~~-~~~~~~~~~~~sy-I~~sYVka-Ve~AGA~PV~LP~~-~~~e~l~~----~Ld~VDGVLLTGG~ 152 (203)
.+||.|||.+.-.+- ..+.... ...-| .+..++.+ +++.|+.++.++.. ++.+.+++ .++.+|=|+++||.
T Consensus 177 ~~rprV~IisTGdELv~pg~~l~-~G~I~dsNs~~L~a~l~~~G~~v~~~~iv~Dd~e~i~~~l~~al~~~DlVIttGGt 255 (546)
T PRK14497 177 YEKPKIYLIATGDELVEPGNSLS-PGKIYESNLHYLYSKLKSEGYKIVGLSLLSDDKESIKNEIKRAISVADVLILTGGT 255 (546)
T ss_pred ccCCEEEEEEcCCcccCCCCCCC-CCcEEEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhhcCCEEEEcCCc
Confidence 468999986542110 0111111 11222 23335555 78899988766554 34455544 45669999999997
Q ss_pred CCCC
Q 028817 153 AKKG 156 (203)
Q Consensus 153 DVdP 156 (203)
.+..
T Consensus 256 S~G~ 259 (546)
T PRK14497 256 SAGE 259 (546)
T ss_pred cCCC
Confidence 5443
No 158
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=71.26 E-value=65 Score=32.51 Aligned_cols=43 Identities=21% Similarity=0.191 Sum_probs=25.4
Q ss_pred HHHC-CCeEEEeecC-CCHHHHHHHHH------hcCEEEeCCCCCCCCcCh
Q 028817 117 VESA-GARVIPLIYN-EPEEILFEKLK------LVNGVLLTGGWAKKGLYF 159 (203)
Q Consensus 117 Ve~A-GA~PV~LP~~-~~~e~l~~~Ld------~VDGVLLTGG~DVdP~yY 159 (203)
.++. |+.++..... ++.+.+.+.|+ .+|-||.|||..+.+.=|
T Consensus 491 ~~~l~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVItTGGts~g~~D~ 541 (659)
T PLN02699 491 SEKLGGAKVVATAVVPDDVEKIKDVLQKWSDIDRMDLILTLGGTGFTPRDV 541 (659)
T ss_pred hhhcCCcEEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCccCCCCcc
Confidence 4444 8877654332 34454554443 479999999976544333
No 159
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=70.57 E-value=11 Score=29.91 Aligned_cols=45 Identities=24% Similarity=0.196 Sum_probs=29.4
Q ss_pred HHHH-HHHHCCCeEEEeecCC-CHHHH----HHHHHhcCEEEeCCCCCCCC
Q 028817 112 SYVK-FVESAGARVIPLIYNE-PEEIL----FEKLKLVNGVLLTGGWAKKG 156 (203)
Q Consensus 112 sYVk-aVe~AGA~PV~LP~~~-~~e~l----~~~Ld~VDGVLLTGG~DVdP 156 (203)
.+++ .+++.|+.+....... +.+.+ ++.++.+|-|+.|||.-+.+
T Consensus 30 ~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG~g~g~ 80 (144)
T TIGR00177 30 PLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGGTGVGP 80 (144)
T ss_pred HHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCCCCCCC
Confidence 3444 4788899887555433 33434 44556789999999976544
No 160
>PRK11249 katE hydroperoxidase II; Provisional
Probab=70.53 E-value=8.8 Score=39.40 Aligned_cols=75 Identities=9% Similarity=-0.066 Sum_probs=42.9
Q ss_pred HHHHHHHHHCCCeEEEeecCCC-------H-HHHHHHHH-----hcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCC
Q 028817 111 ASYVKFVESAGARVIPLIYNEP-------E-EILFEKLK-----LVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQ 177 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~-------~-e~l~~~Ld-----~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~ 177 (203)
....+.++++|+.+.++-.... . -..+.-++ .+|+|+++||... .........+.+.+.++...+
T Consensus 614 ~~~~daL~~AGa~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~-~~~L~~d~~al~fL~eaykHg- 691 (752)
T PRK11249 614 LAILKALKAKGVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKAN-IADLADNGDARYYLLEAYKHL- 691 (752)
T ss_pred HHHHHHHHHCCCEEEEEECCCCeEECCCCCEEecceeeccCCccCCCEEEECCCchh-HHHHhhCHHHHHHHHHHHHcC-
Confidence 4556778899999988764211 0 01122222 5799999999642 111222233444444444333
Q ss_pred CcceEeeCCc
Q 028817 178 SLVHGITGDV 187 (203)
Q Consensus 178 ~PV~Gic~~~ 187 (203)
-+|.+||.|.
T Consensus 692 K~IAAiCaG~ 701 (752)
T PRK11249 692 KPIALAGDAR 701 (752)
T ss_pred CEEEEeCccH
Confidence 2899999875
No 161
>PRK01215 competence damage-inducible protein A; Provisional
Probab=70.47 E-value=27 Score=31.06 Aligned_cols=66 Identities=17% Similarity=0.107 Sum_probs=37.2
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHH-HHHCCCeEEEeecC-CCHH----HHHHHHHhcCEEEeCCCC
Q 028817 81 NNRPVIGILSHPGDGASGRLNNSKNASYIAASYVKF-VESAGARVIPLIYN-EPEE----ILFEKLKLVNGVLLTGGW 152 (203)
Q Consensus 81 ~~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVka-Ve~AGA~PV~LP~~-~~~e----~l~~~Ld~VDGVLLTGG~ 152 (203)
+.+|.|+|.+--.+- ..+ ...-....|+.. +.+.|..+...... ++.+ .+.+.+++.|-|++|||.
T Consensus 1 ~~~~~v~Ii~~GdEl-----l~G-~i~dtn~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVIttGG~ 72 (264)
T PRK01215 1 MDKWFAWIITIGNEL-----LIG-RTVNTNASWIARRLTYLGYTVRRITVVMDDIEEIVSAFREAIDRADVVVSTGGL 72 (264)
T ss_pred CCCCEEEEEEEChhc-----cCC-eEEEhhHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 356888876442211 111 111223445553 78899987544432 2333 345566678999999995
No 162
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=70.06 E-value=29 Score=29.00 Aligned_cols=75 Identities=25% Similarity=0.330 Sum_probs=50.6
Q ss_pred EEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCC-----------------------CHHHHHHHHH
Q 028817 85 VIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNE-----------------------PEEILFEKLK 141 (203)
Q Consensus 85 VIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~-----------------------~~e~l~~~Ld 141 (203)
+++|+..++. . .+...+.+..++.++++|+.+-++-..+ +.+++.+.+.
T Consensus 3 i~~I~gs~r~-~-------G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~ 74 (207)
T COG0655 3 ILGINGSPRS-N-------GNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLL 74 (207)
T ss_pred eeEEEecCCC-C-------CcHHHHHHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHH
Confidence 6777777653 1 2445567777888999998776655431 1356677788
Q ss_pred hcCEEEeCCCCCCCCcChHHHHHHHHHHHHH
Q 028817 142 LVNGVLLTGGWAKKGLYFQIVEKIFKHEAIY 172 (203)
Q Consensus 142 ~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~ 172 (203)
..||++|- .|.||+.+.--+|..+++
T Consensus 75 ~aD~iI~g-----sPvy~g~vsa~~K~fiDR 100 (207)
T COG0655 75 EADGIIFG-----SPVYFGNVSAQMKAFIDR 100 (207)
T ss_pred HCCEEEEe-----CCeecCCchHHHHHHHhh
Confidence 89999995 488997665555555554
No 163
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=69.91 E-value=15 Score=29.75 Aligned_cols=44 Identities=16% Similarity=0.054 Sum_probs=28.7
Q ss_pred cCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCcc
Q 028817 143 VNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDVV 188 (203)
Q Consensus 143 VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~~ 188 (203)
.+||.|+||....+.-.+....+.+++.+. ..+.-||-..|=++
T Consensus 66 ~~gvt~sGGEPl~~~~~~~l~~l~~~~k~~--~~~~~i~~~tGy~~ 109 (154)
T PRK11121 66 RQGLSLSGGDPLHPQNVPDILKLVQRVKAE--CPGKDIWVWTGYKL 109 (154)
T ss_pred CCcEEEECCCccchhhHHHHHHHHHHHHHH--CCCCCEEEecCCCH
Confidence 389999999765554455666677766554 22346777777663
No 164
>PRK14057 epimerase; Provisional
Probab=69.70 E-value=19 Score=32.30 Aligned_cols=59 Identities=14% Similarity=0.127 Sum_probs=43.2
Q ss_pred HHHHHHHHHCCCe----------EEEeecCCCHHHHHHHHHhcCEEEe------CCCCCCCCcChHHHHHHHHHH
Q 028817 111 ASYVKFVESAGAR----------VIPLIYNEPEEILFEKLKLVNGVLL------TGGWAKKGLYFQIVEKIFKHE 169 (203)
Q Consensus 111 ~sYVkaVe~AGA~----------PV~LP~~~~~e~l~~~Ld~VDGVLL------TGG~DVdP~yY~~~~~I~~~A 169 (203)
...++.+++.|++ =|.|-+..+.+.++.+++.+|-|++ -||+...|.-++.++.+-++.
T Consensus 113 ~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~ 187 (254)
T PRK14057 113 HHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLL 187 (254)
T ss_pred HHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHhCCEEEEEEECCCCCchhccHHHHHHHHHHHHHH
Confidence 5567788888862 4667666788999999999999998 346666666666666555444
No 165
>PRK06131 dihydroxy-acid dehydratase; Validated
Probab=69.10 E-value=13 Score=37.05 Aligned_cols=73 Identities=22% Similarity=0.259 Sum_probs=43.4
Q ss_pred CCCCCCCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCC------------CHHHHHHHH----
Q 028817 77 DRRLNNRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNE------------PEEILFEKL---- 140 (203)
Q Consensus 77 ~~~~~~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~------------~~e~l~~~L---- 140 (203)
|.++..||+|||.....+..+. .....-+.+.--+.|+++|++|+-++... +.+.+.+-+
T Consensus 32 ~ed~~~kP~IgI~ns~se~~Pc----h~hl~~l~~~vk~gi~~aGg~p~ef~ti~v~Dgi~~g~sL~sRelIAdsiE~~~ 107 (571)
T PRK06131 32 DELFDGRPIIGICNTWSDLNPC----NAHFRQLAERVKRGVLEAGGFPVEFPVISLGESFLRPTAMLYRNLAAMDVEEMI 107 (571)
T ss_pred hHHhccCCEEEEecccccCcCc----hhhHHHHHHHHHHHHHHcCCEEEecCccCccccccCccccccHHHHHHHHHHHH
Confidence 3344449999998876543211 11222233333346888999999888631 233222222
Q ss_pred --HhcCEEEeCCCCC
Q 028817 141 --KLVNGVLLTGGWA 153 (203)
Q Consensus 141 --d~VDGVLLTGG~D 153 (203)
..+||+++.||=|
T Consensus 108 ~a~~~Dg~v~i~~CD 122 (571)
T PRK06131 108 RGYPIDGVVLLGGCD 122 (571)
T ss_pred hcCCcceEEEEeeCC
Confidence 3589999999977
No 166
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=69.07 E-value=3.1 Score=37.21 Aligned_cols=66 Identities=17% Similarity=0.130 Sum_probs=34.2
Q ss_pred HHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHHHHH-HHHHHHHHHhCCCC-cceEeeCCc
Q 028817 117 VESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQIVEK-IFKHEAIYERKKQS-LVHGITGDV 187 (203)
Q Consensus 117 Ve~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~-I~~~AL~~n~~g~~-PV~Gic~~~ 187 (203)
.++-|+.+=+.+.+.... .. .+.+|=++|-||+|-.-..- .++ +-++.=-++...+- |++.||||.
T Consensus 30 a~~rgi~v~i~~vsl~d~-~~--~~~~Dl~~~GGgqD~eQ~i~--t~d~~~k~~~l~~~i~~g~p~laiCgg~ 97 (250)
T COG3442 30 AEKRGIKVEIVEVSLTDT-FP--DDSYDLYFLGGGQDYEQEIA--TRDLLTKKEGLKDAIENGKPVLAICGGY 97 (250)
T ss_pred HHhcCCceEEEEeecCCC-CC--cccccEEEecCchHHHHHHH--hhhhccccHHHHHHHhcCCcEEEEccch
Confidence 455565554444432222 11 16789899999988211111 122 22222223333444 999999994
No 167
>PRK10342 glycerate kinase I; Provisional
Probab=68.66 E-value=6.5 Score=37.20 Aligned_cols=53 Identities=21% Similarity=0.276 Sum_probs=38.2
Q ss_pred HHHHHHHHhcCEEEeCC-CC-CCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCcccccc
Q 028817 134 EILFEKLKLVNGVLLTG-GW-AKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDVVQKDY 192 (203)
Q Consensus 134 e~l~~~Ld~VDGVLLTG-G~-DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~~~~~~ 192 (203)
..+++.++..| |++|| |. |-...+=+..-.+-++|.+.+ .||..|||-+ ..|+
T Consensus 276 ~~l~~~l~~AD-LVITGEG~~D~QTl~GK~p~gVa~~A~~~~----vPviai~G~~-~~~~ 330 (381)
T PRK10342 276 LNLEEHIHDCT-LVITGEGRIDSQSIHGKVPIGVANVAKKYH----KPVIGIAGSL-TDDV 330 (381)
T ss_pred cCHHHHhccCC-EEEECCCcCcccccCCccHHHHHHHHHHhC----CCEEEEeccc-CCCh
Confidence 35678889999 88999 55 444444456677778777665 7999999963 5554
No 168
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=68.36 E-value=32 Score=28.52 Aligned_cols=74 Identities=14% Similarity=0.015 Sum_probs=48.7
Q ss_pred hhHHHHH-HHHHCCCeEEEeecCCCHHHHHHHH--HhcCEEEeCCCCCCCCcChHHHHHHHHHHHH-HHhCCCCcceEee
Q 028817 109 IAASYVK-FVESAGARVIPLIYNEPEEILFEKL--KLVNGVLLTGGWAKKGLYFQIVEKIFKHEAI-YERKKQSLVHGIT 184 (203)
Q Consensus 109 I~~sYVk-aVe~AGA~PV~LP~~~~~e~l~~~L--d~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~-~n~~g~~PV~Gic 184 (203)
..+..+. +++.+|..++..+...+.+++.+.. +.+|.|.+++ +++.-+.+++...+ ...+|-..|.+++
T Consensus 27 ~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSs-------l~g~h~~l~~~lve~lre~G~~~i~v~~ 99 (143)
T COG2185 27 RGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSS-------LDGGHLTLVPGLVEALREAGVEDILVVV 99 (143)
T ss_pred cchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEe-------ccchHHHHHHHHHHHHHHhCCcceEEee
Confidence 3455555 4688999999999888777665544 7889998876 22222333333333 3445555778999
Q ss_pred CCccc
Q 028817 185 GDVVQ 189 (203)
Q Consensus 185 ~~~~~ 189 (203)
||++-
T Consensus 100 GGvip 104 (143)
T COG2185 100 GGVIP 104 (143)
T ss_pred cCccC
Confidence 99874
No 169
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=67.69 E-value=28 Score=29.23 Aligned_cols=74 Identities=15% Similarity=0.174 Sum_probs=47.1
Q ss_pred EEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCC--------------CHHHHHHHHHhcCEEEeCC
Q 028817 85 VIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNE--------------PEEILFEKLKLVNGVLLTG 150 (203)
Q Consensus 85 VIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~--------------~~e~l~~~Ld~VDGVLLTG 150 (203)
|++|.++++... ....+.+.+++.+++.|...-.|-... ....+.+.+...|||+|
T Consensus 3 Il~I~GSpr~~S--------~t~~l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi-- 72 (191)
T PRK10569 3 VITLAGSPRFPS--------RSSALLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIV-- 72 (191)
T ss_pred EEEEEcCCCCCC--------hHHHHHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEE--
Confidence 788888886421 334566777778888888776553311 12245567777899998
Q ss_pred CCCCCCcChHHHHHHHHHHHH
Q 028817 151 GWAKKGLYFQIVEKIFKHEAI 171 (203)
Q Consensus 151 G~DVdP~yY~~~~~I~~~AL~ 171 (203)
..|.|.....-++|-.++
T Consensus 73 ---~tP~Y~~s~pg~LKn~iD 90 (191)
T PRK10569 73 ---ATPVYKASFSGALKTLLD 90 (191)
T ss_pred ---ECCccCCCCCHHHHHHHH
Confidence 568888655444444443
No 170
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=67.17 E-value=41 Score=33.95 Aligned_cols=95 Identities=8% Similarity=0.081 Sum_probs=56.5
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCCCC-chhhhHHHHHHHHHCCCeEEEeecCC-----------------CHHHHHHH---
Q 028817 81 NNRPVIGILSHPGDGASGRLNNSKN-ASYIAASYVKFVESAGARVIPLIYNE-----------------PEEILFEK--- 139 (203)
Q Consensus 81 ~~rPVIGIta~~~~~~~~~~~~~~~-~syI~~sYVkaVe~AGA~PV~LP~~~-----------------~~e~l~~~--- 139 (203)
.+||+|||.....+..+ .+. ..-+.+.--+.|+++|+.|+.++... +.+.+.+-
T Consensus 31 ~~kP~IgI~ns~~e~~p-----ch~hl~~la~~vk~gi~~aGG~p~ef~ti~v~Dgit~g~~GM~ySL~SRelIAdsiE~ 105 (615)
T PRK12448 31 FGKPIIAVVNSFTQFVP-----GHVHLKDLGQLVAREIEAAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRELIADSVEY 105 (615)
T ss_pred hCCCEEEEEeccccCcC-----chhhHHHHHHHHHHHHHHcCCeeeEeccCcccCCcCcCCccceechhhHHHHHHHHHH
Confidence 35999999877654321 211 11222333336888999999886521 12222222
Q ss_pred ---HHhcCEEEeCCCCC-CCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCccccc
Q 028817 140 ---LKLVNGVLLTGGWA-KKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDVVQKD 191 (203)
Q Consensus 140 ---Ld~VDGVLLTGG~D-VdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~~~~~ 191 (203)
-..+||+++.||=| +-|.. ++ -|+..| .|..-+.||+..--
T Consensus 106 ~~~a~~~Dg~V~i~~CDK~~PG~------lM-aaarln----iPsi~v~gGpm~~G 150 (615)
T PRK12448 106 MVNAHCADAMVCISNCDKITPGM------LM-AALRLN----IPVVFVSGGPMEAG 150 (615)
T ss_pred HhhCCCcceEEEeccCCCchHHH------HH-HHHhcC----CCEEEEeCCCcCCC
Confidence 24689999999988 34432 22 234444 69888999886544
No 171
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=67.01 E-value=12 Score=30.38 Aligned_cols=39 Identities=18% Similarity=0.016 Sum_probs=26.3
Q ss_pred cCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCccc
Q 028817 143 VNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDVVQ 189 (203)
Q Consensus 143 VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~~~ 189 (203)
++||.||||. ..++....+.+++.+. | ..|+--.|++.+
T Consensus 62 ~~gVt~SGGE----l~~~~l~~ll~~lk~~---G-l~i~l~Tg~~~~ 100 (147)
T TIGR02826 62 ISCVLFLGGE----WNREALLSLLKIFKEK---G-LKTCLYTGLEPK 100 (147)
T ss_pred CCEEEEechh----cCHHHHHHHHHHHHHC---C-CCEEEECCCCCH
Confidence 4799999999 3445566666665543 3 467766787753
No 172
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=66.93 E-value=13 Score=37.42 Aligned_cols=73 Identities=11% Similarity=0.086 Sum_probs=41.6
Q ss_pred hhhhHHHHHHHHHCCCeE-EEeec-CCCHHHHHHHHHh---cCEEEeCCCC--CCCCcChHHHHHHHHHHHHHHhCCCCc
Q 028817 107 SYIAASYVKFVESAGARV-IPLIY-NEPEEILFEKLKL---VNGVLLTGGW--AKKGLYFQIVEKIFKHEAIYERKKQSL 179 (203)
Q Consensus 107 syI~~sYVkaVe~AGA~P-V~LP~-~~~~e~l~~~Ld~---VDGVLLTGG~--DVdP~yY~~~~~I~~~AL~~n~~g~~P 179 (203)
+|...- ++.++.+.+.| |++-- ....+++-+++.. +|++++.=|. ...+.+-+-...||+.+ ++.|
T Consensus 25 SyTfNi-y~ll~~~~~vp~V~~vh~~~~~~d~~~~l~q~~~FDaIVVgPGPG~P~~a~d~gI~~rl~~~~------~~iP 97 (767)
T KOG1224|consen 25 SYTFNI-YQLLSTINGVPPVVIVHDEWTWEDAYHYLYQDVAFDAIVVGPGPGSPMCAADIGICLRLLLEC------RDIP 97 (767)
T ss_pred chhhhH-HHHHHHhcCCCcEEEEeccccCHHHHHHHhhccccceEEecCCCCCCCcHHHHHHHHHHHHhc------CCCc
Confidence 344443 35666643333 44433 2234566666766 9999886554 23444445444444432 2679
Q ss_pred ceEeeCC
Q 028817 180 VHGITGD 186 (203)
Q Consensus 180 V~Gic~~ 186 (203)
|+|||=|
T Consensus 98 ilGICLG 104 (767)
T KOG1224|consen 98 ILGICLG 104 (767)
T ss_pred eeeeehh
Confidence 9999976
No 173
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=65.89 E-value=9 Score=36.16 Aligned_cols=52 Identities=19% Similarity=0.184 Sum_probs=35.8
Q ss_pred HHHHHHHHhcCEEEeCCCCCC-CCcCh-HHHHHHHHHHHHHHhCCCCcceEeeCCccccc
Q 028817 134 EILFEKLKLVNGVLLTGGWAK-KGLYF-QIVEKIFKHEAIYERKKQSLVHGITGDVVQKD 191 (203)
Q Consensus 134 e~l~~~Ld~VDGVLLTGG~DV-dP~yY-~~~~~I~~~AL~~n~~g~~PV~Gic~~~~~~~ 191 (203)
..+++.++..| ++|||=..+ .-.++ +..-.+-++|.+.+ -||..|||-+ ..|
T Consensus 275 ~~l~~~l~~AD-lVITGEG~~D~Qtl~GK~p~~Va~~A~~~~----vPviai~G~v-~~~ 328 (375)
T TIGR00045 275 LDLEQKIKDAD-LVITGEGRLDRQSLMGKAPVGVAKRAKKYG----VPVIAIAGSL-GDG 328 (375)
T ss_pred hCHHHHhcCCC-EEEECCCcccccccCCchHHHHHHHHHHhC----CeEEEEeccc-CCC
Confidence 35678899999 888984432 33344 45567777777665 7999999965 444
No 174
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=65.25 E-value=56 Score=26.82 Aligned_cols=44 Identities=11% Similarity=0.107 Sum_probs=27.9
Q ss_pred hhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHH-----hcCEEEeCCC
Q 028817 108 YIAASYVKFVESAGARVIPLIYNEPEEILFEKLK-----LVNGVLLTGG 151 (203)
Q Consensus 108 yI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld-----~VDGVLLTGG 151 (203)
.+.+..-++.++.|..+++.....+.+.-.+.++ .+|||++..+
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~vdgii~~~~ 64 (273)
T cd06305 16 AYLAGTKAEAEALGGDLRVYDAGGDDAKQADQIDQAIAQKVDAIIIQHG 64 (273)
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 3455666677888988887765444433223332 7999999764
No 175
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=65.24 E-value=39 Score=27.95 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=29.3
Q ss_pred hhhhHHHHHHHHHCCCeEEEeecCCCHH----HHHHHH-HhcCEEEeCCCC
Q 028817 107 SYIAASYVKFVESAGARVIPLIYNEPEE----ILFEKL-KLVNGVLLTGGW 152 (203)
Q Consensus 107 syI~~sYVkaVe~AGA~PV~LP~~~~~e----~l~~~L-d~VDGVLLTGG~ 152 (203)
.-+.+...+.+++.|-.+++.....+.+ .++.+. ..+|||++.++.
T Consensus 15 ~~~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~ 65 (269)
T cd06281 15 AQLFSGAEDRLRAAGYSLLIANSLNDPERELEILRSFEQRRMDGIIIAPGD 65 (269)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCC
Confidence 3455565667788898887776544443 233344 368999998764
No 176
>PRK00170 azoreductase; Reviewed
Probab=64.73 E-value=56 Score=26.56 Aligned_cols=77 Identities=12% Similarity=0.099 Sum_probs=46.5
Q ss_pred CEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHC--CCeEEEeecC-------C-----------------------
Q 028817 84 PVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESA--GARVIPLIYN-------E----------------------- 131 (203)
Q Consensus 84 PVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~A--GA~PV~LP~~-------~----------------------- 131 (203)
.|+.|.++++... .....+.+.+++.++++ |..+-.+-.. .
T Consensus 3 kil~i~gSpr~~~-------s~s~~l~~~~~~~l~~~~~~~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d 75 (201)
T PRK00170 3 KVLVIKSSILGDY-------SQSMQLGDAFIEAYKEAHPDDEVTVRDLAAEPIPVLDGEVVGALGKSAETLTPRQQEAVA 75 (201)
T ss_pred eEEEEecCCCCCC-------cHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCCCCHHHHHhhcCCcccCCHHHHHHHH
Confidence 4778888886421 13345778888888887 6665444221 0
Q ss_pred CHHHHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHH
Q 028817 132 PEEILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIY 172 (203)
Q Consensus 132 ~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~ 172 (203)
+.+.+.+.+...|+|+| ..|.|+...--.+|-.++.
T Consensus 76 ~~~~l~~~i~~AD~iV~-----~sP~y~~~~pa~LK~~iDr 111 (201)
T PRK00170 76 LSDELLEEFLAADKIVI-----AAPMYNFSIPTQLKAYIDL 111 (201)
T ss_pred HHHHHHHHHHHCCEEEE-----eecccccCCcHHHHHHHHh
Confidence 01233456777899999 5788886554444444443
No 177
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=64.51 E-value=20 Score=28.00 Aligned_cols=46 Identities=22% Similarity=0.209 Sum_probs=29.4
Q ss_pred HHHHH-HHHHCCCeEEEeecCC-CHHHH----HHHHHhcCEEEeCCCCCCCC
Q 028817 111 ASYVK-FVESAGARVIPLIYNE-PEEIL----FEKLKLVNGVLLTGGWAKKG 156 (203)
Q Consensus 111 ~sYVk-aVe~AGA~PV~LP~~~-~~e~l----~~~Ld~VDGVLLTGG~DVdP 156 (203)
..+++ .+++.|..+....... +.+.+ ++.++..|-|+.+||.-+.+
T Consensus 21 ~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG~g~g~ 72 (133)
T cd00758 21 GPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTGGTGVGR 72 (133)
T ss_pred HHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCCCCCCC
Confidence 33444 4788998877664433 44434 44556689999999976544
No 178
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=63.89 E-value=5.7 Score=36.45 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=30.0
Q ss_pred HhcCEEEeCCCCC--C---CCcChHHHHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 141 KLVNGVLLTGGWA--K---KGLYFQIVEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 141 d~VDGVLLTGG~D--V---dP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
+..||+++||..- + +=.|+++.+.||+.+.+-. ..++.||=|
T Consensus 97 ~~~DglIITGAPvE~l~Fe~V~YW~El~~i~dwa~~~v----~stl~iCWg 143 (298)
T PF04204_consen 97 RKFDGLIITGAPVEQLPFEEVDYWDELTEIFDWAKTHV----TSTLFICWG 143 (298)
T ss_dssp S-EEEEEE---TTTTS-GGGSTTHHHHHHHHHHHHHHE----EEEEEETHH
T ss_pred CCCCEEEEeCCCcCCCCcccCCcHHHHHHHHHHHHHcC----CcchhhhHH
Confidence 4789999999863 2 4578899999999998866 688888844
No 179
>PF02514 CobN-Mg_chel: CobN/Magnesium Chelatase; InterPro: IPR003672 This family contains a domain common to the cobN protein and to magnesium protoporphyrin chelatase. CobN may play a role in cobalt insertion reactions and is implicated in the conversion of precorrin-2 to cobyrinic acid in cobalamin biosynthesis []. Magnesium protoporphyrin chelatase is involved in chlorophyll biosynthesis as the third subunit of light-independent protochlorophyllide reductase in bacteria and plants [].; GO: 0009058 biosynthetic process
Probab=63.36 E-value=32 Score=36.79 Aligned_cols=65 Identities=22% Similarity=0.377 Sum_probs=46.6
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCC---CHHHHHHHHHh-----cCEEEeCCCC
Q 028817 81 NNRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNE---PEEILFEKLKL-----VNGVLLTGGW 152 (203)
Q Consensus 81 ~~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~---~~e~l~~~Ld~-----VDGVLLTGG~ 152 (203)
..+|+|||+-...... ....-.-..-++.+|+.|..||++-... ..+.+++++.. +|.||-+-+.
T Consensus 69 ~~~P~VgIlfyrs~~~-------~g~~~~vdaLI~~LE~~G~nvipvf~~~~~~~~~~i~~~f~~~g~~~vDaIIn~~~f 141 (1098)
T PF02514_consen 69 PNRPTVGILFYRSYWL-------SGNTAVVDALIRALEERGLNVIPVFCSSGPDSQEAIEDYFMDDGKPRVDAIINLTGF 141 (1098)
T ss_pred CCCCEEEEEeehhhhh-------cCCcHHHHHHHHHHHHCCCeEEEEEecCccchHHHHHHHHhhcCCCCceEEEEcCcc
Confidence 4689999998764321 1223344678888999999999988542 45678889987 9999866654
No 180
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=63.20 E-value=51 Score=30.24 Aligned_cols=73 Identities=12% Similarity=0.153 Sum_probs=41.7
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHH-HHHHCCCeEEEeecC-CCHHHHHHHH----Hh-cCEEEeCCCCC
Q 028817 81 NNRPVIGILSHPGDGASGRLNNSKNASYIAASYVK-FVESAGARVIPLIYN-EPEEILFEKL----KL-VNGVLLTGGWA 153 (203)
Q Consensus 81 ~~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVk-aVe~AGA~PV~LP~~-~~~e~l~~~L----d~-VDGVLLTGG~D 153 (203)
.++|.+||.+.-.+-..+. ..-.....++ .+++.|+.++..... ++.+.+.+.+ +. +|=|++|||..
T Consensus 157 ~r~~rv~II~TG~Ev~~G~------i~D~~~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~ai~~~~~~g~DlIItTGGts 230 (312)
T cd03522 157 FRPLRVGLIVTGSEVYGGR------IEDKFGPVLRARLAALGVELVEQVIVPHDEAAIAAAIAEALEAGAELLILTGGAS 230 (312)
T ss_pred cCCCEEEEEEcCCcCCCCc------EEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhcCCCCEEEEeCCcc
Confidence 5578899876532111111 1112233444 478899988654443 3445454444 33 89999999987
Q ss_pred CCCcCh
Q 028817 154 KKGLYF 159 (203)
Q Consensus 154 VdP~yY 159 (203)
+++.=+
T Consensus 231 vg~~D~ 236 (312)
T cd03522 231 VDPDDV 236 (312)
T ss_pred cCCcch
Confidence 766544
No 181
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=62.64 E-value=69 Score=25.89 Aligned_cols=90 Identities=12% Similarity=0.125 Sum_probs=52.3
Q ss_pred EEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHH-HCCCeEEEeecC----------------CCHHHHHHHHHhcCEEE
Q 028817 85 VIGILSHPGDGASGRLNNSKNASYIAASYVKFVE-SAGARVIPLIYN----------------EPEEILFEKLKLVNGVL 147 (203)
Q Consensus 85 VIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe-~AGA~PV~LP~~----------------~~~e~l~~~Ld~VDGVL 147 (203)
|++|.++++.. .....+.+.+++.++ +.|..+..+-.. .+.+.+.+.+...|||+
T Consensus 2 Il~i~GS~r~~--------s~t~~l~~~~~~~l~~~~g~ev~~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~AD~iI 73 (174)
T TIGR03566 2 VVGVSGSLTRP--------SRTLALVEALVAELAARLGISPRTIDLADLAPSLGGALWRSQLPPDAERILQAIESADLLV 73 (174)
T ss_pred EEEEECCCCCC--------ChHHHHHHHHHHHHHHhcCCeEEEEEhhhcChhhccccccCCCCHHHHHHHHHHHHCCEEE
Confidence 67787777542 133445666666664 456655443210 01235667788899999
Q ss_pred eCCCCCCCCcChHHHHHHHHHHHHHH----hCCCC-cceEeeCCc
Q 028817 148 LTGGWAKKGLYFQIVEKIFKHEAIYE----RKKQS-LVHGITGDV 187 (203)
Q Consensus 148 LTGG~DVdP~yY~~~~~I~~~AL~~n----~~g~~-PV~Gic~~~ 187 (203)
| ..|.|+....-.+|-++++- -+|.. -+.+++||.
T Consensus 74 i-----~tP~Y~~s~~~~LKn~lD~~~~~~l~~K~~~~v~~~g~~ 113 (174)
T TIGR03566 74 V-----GSPVYRGSYTGLFKHLFDLVDPNALIGKPVLLAATGGSE 113 (174)
T ss_pred E-----ECCcCcCcCcHHHHHHHHhcCHhHhCCCEEEEEEecCCc
Confidence 8 57888877666666666542 23333 445555553
No 182
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=62.56 E-value=29 Score=28.28 Aligned_cols=44 Identities=16% Similarity=0.107 Sum_probs=28.3
Q ss_pred hhhHHHHHHHHHCCCeEEEeecCCCHHH----HHHHH-HhcCEEEeCCC
Q 028817 108 YIAASYVKFVESAGARVIPLIYNEPEEI----LFEKL-KLVNGVLLTGG 151 (203)
Q Consensus 108 yI~~sYVkaVe~AGA~PV~LP~~~~~e~----l~~~L-d~VDGVLLTGG 151 (203)
.+....-+++++.|..++++....+.+. +++++ ..+||+++.+.
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgii~~~~ 64 (259)
T cd01542 16 RTVKGILAALYENGYQMLLMNTNFSIEKEIEALELLARQKVDGIILLAT 64 (259)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 3445555667778998888876544433 23333 47999999865
No 183
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional
Probab=62.55 E-value=38 Score=33.33 Aligned_cols=77 Identities=25% Similarity=0.251 Sum_probs=41.3
Q ss_pred CCCCEEEEcCCCCCC-CCCCCCCCCCchhhhHHHHH-HHHHCCCeEEEeecC-CCHHHHH----HHHHhcCEEEeCCCCC
Q 028817 81 NNRPVIGILSHPGDG-ASGRLNNSKNASYIAASYVK-FVESAGARVIPLIYN-EPEEILF----EKLKLVNGVLLTGGWA 153 (203)
Q Consensus 81 ~~rPVIGIta~~~~~-~~~~~~~~~~~syI~~sYVk-aVe~AGA~PV~LP~~-~~~e~l~----~~Ld~VDGVLLTGG~D 153 (203)
.++|.|||.+.-.+- ..+.........-....++. .+++.|+.++..... ++.+.+. +.++.+|-||.|||..
T Consensus 184 ~~~prv~vi~tG~El~~~~~~~~~g~i~dsn~~~l~~~l~~~g~~~~~~~~v~Dd~~~i~~~l~~~~~~~D~iIttGG~s 263 (633)
T PRK14498 184 YKKPRVGIISTGDELVEPGEPLKPGKIYDVNSYTLAAAVEEAGGEPVRYGIVPDDEEELEAALRKALKECDLVLLSGGTS 263 (633)
T ss_pred ecCcEEEEEecCccccCCCCCCCCCEEEEChHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEECCCCc
Confidence 457999986442110 11110111111112333455 478899988766543 3444443 4445689999999976
Q ss_pred CCCc
Q 028817 154 KKGL 157 (203)
Q Consensus 154 VdP~ 157 (203)
+.+.
T Consensus 264 ~g~~ 267 (633)
T PRK14498 264 AGAG 267 (633)
T ss_pred CCCc
Confidence 5443
No 184
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=61.63 E-value=71 Score=25.97 Aligned_cols=44 Identities=23% Similarity=0.206 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHCCCeEEEeecCCCHH----HHHHHHH-hcCEEEeCCCC
Q 028817 109 IAASYVKFVESAGARVIPLIYNEPEE----ILFEKLK-LVNGVLLTGGW 152 (203)
Q Consensus 109 I~~sYVkaVe~AGA~PV~LP~~~~~e----~l~~~Ld-~VDGVLLTGG~ 152 (203)
+.+..-+++++.|..+++.....+.+ .++.+++ .+|||++.+..
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~ 65 (268)
T cd01575 17 VLQGISDVLEAAGYQLLLGNTGYSPEREEELLRTLLSRRPAGLILTGLE 65 (268)
T ss_pred HHHHHHHHHHHcCCEEEEecCCCCchhHHHHHHHHHHcCCCEEEEeCCC
Confidence 44555567788898888877654332 3344443 79999998743
No 185
>COG4242 CphB Cyanophycinase and related exopeptidases [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=61.27 E-value=26 Score=32.10 Aligned_cols=82 Identities=16% Similarity=0.239 Sum_probs=50.1
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecC-----CCHHHHHHHHHhcCEEEeCCCCC--CC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYN-----EPEEILFEKLKLVNGVLLTGGWA--KK 155 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~-----~~~e~l~~~Ld~VDGVLLTGG~D--Vd 155 (203)
+-.|.|....... .-.+...|.+..|..|+.-|-+--. .+.+.+.+.++.++||+||||.- +-
T Consensus 52 ~A~i~I~paas~e----------p~~iG~~y~rife~~gv~~v~ildir~R~~a~~s~~~~~v~~a~gIfftGGDQ~ri~ 121 (293)
T COG4242 52 KAYIVIIPAASRE----------PRAIGGNYIRIFEMMGVEEVQILDIRNREDASSSDIVAKVENATGIFFTGGDQLRII 121 (293)
T ss_pred ceEEEEEecCccC----------hhhhccchhhHHHHhccceeEEEeeecccccchHHHHHHHHhCceEEEecCcceeee
Confidence 3477776655431 1356777888778877655444322 24457778899999999999964 22
Q ss_pred CcChHHHHHHHHHHHHHHhCC
Q 028817 156 GLYFQIVEKIFKHEAIYERKK 176 (203)
Q Consensus 156 P~yY~~~~~I~~~AL~~n~~g 176 (203)
..+= ...+++..-+...+|
T Consensus 122 ~~lk--dTpl~~~ir~r~r~G 140 (293)
T COG4242 122 GSLK--DTPLMAAIRQRVRRG 140 (293)
T ss_pred eecc--CCHHHHHHHHHHhcC
Confidence 2221 334555555555555
No 186
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=60.52 E-value=7 Score=36.04 Aligned_cols=43 Identities=14% Similarity=0.161 Sum_probs=31.6
Q ss_pred HHhcCEEEeCCCCC-----CCCcChHHHHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 140 LKLVNGVLLTGGWA-----KKGLYFQIVEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 140 Ld~VDGVLLTGG~D-----VdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
-+..||+++||..- =+=.|+++.+.||+.+.+-. .-++.||=|
T Consensus 97 ~~~fDGlIITGAPvE~l~FeeV~YW~El~~I~dwsk~~v----~Stl~iCWa 144 (300)
T TIGR01001 97 DRKFDGLIITGAPVELVPFEDVAYWEELTEIMEWSKHNV----TSTMFICWA 144 (300)
T ss_pred cCCCCEEEEcCCCcCCCCcccCCcHHHHHHHHHHHHHcC----cchHHHHHH
Confidence 36679999999863 15578899999999988744 355556633
No 187
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=60.11 E-value=41 Score=27.69 Aligned_cols=43 Identities=23% Similarity=0.149 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHCCCeEEEeecCCCHHHHHH----HHH-hcCEEEeCCC
Q 028817 109 IAASYVKFVESAGARVIPLIYNEPEEILFE----KLK-LVNGVLLTGG 151 (203)
Q Consensus 109 I~~sYVkaVe~AGA~PV~LP~~~~~e~l~~----~Ld-~VDGVLLTGG 151 (203)
+.+..-+.+++.|...++.....+.+...+ +.. .+|||++.+-
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (263)
T cd06280 17 VSRAVEDAAYRAGLRVILCNTDEDPEKEAMYLELMEEERVTGVIFAPT 64 (263)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 444545567788998888766544443322 333 5999999874
No 188
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=60.03 E-value=37 Score=27.96 Aligned_cols=45 Identities=16% Similarity=0.088 Sum_probs=28.1
Q ss_pred hhhhHHHHHHHHHCCCeEEEeecCCCHH----HHHHHH-HhcCEEEeCCC
Q 028817 107 SYIAASYVKFVESAGARVIPLIYNEPEE----ILFEKL-KLVNGVLLTGG 151 (203)
Q Consensus 107 syI~~sYVkaVe~AGA~PV~LP~~~~~e----~l~~~L-d~VDGVLLTGG 151 (203)
..+.+..-+++++.|..+++.....+.+ .++.+. ..+|||++.+.
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 64 (273)
T cd06292 15 PAFAEAIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLARGVRGVVFISS 64 (273)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3445565667788898888777544332 223333 36899999764
No 189
>PRK09932 glycerate kinase II; Provisional
Probab=59.88 E-value=11 Score=35.58 Aligned_cols=52 Identities=13% Similarity=0.039 Sum_probs=35.3
Q ss_pred HHHHHHHHhcCEEEeCCCCC-CCCcChH-HHHHHHHHHHHHHhCCCCcceEeeCCccccc
Q 028817 134 EILFEKLKLVNGVLLTGGWA-KKGLYFQ-IVEKIFKHEAIYERKKQSLVHGITGDVVQKD 191 (203)
Q Consensus 134 e~l~~~Ld~VDGVLLTGG~D-VdP~yY~-~~~~I~~~AL~~n~~g~~PV~Gic~~~~~~~ 191 (203)
..+++.++..| +++||-.. ..-..++ ..-.+-++|.+.+ .||..|||-+ ..|
T Consensus 276 ~~l~~~l~~AD-lVITGEG~~D~Qt~~GK~p~~Va~~A~~~~----~Pvi~i~G~~-~~~ 329 (381)
T PRK09932 276 VNLEQAVQGAA-LVITGEGRIDSQTAGGKAPLGVASVAKQFN----VPVIGIAGVL-GDG 329 (381)
T ss_pred cChHHHhccCC-EEEECCCcccccccCCccHHHHHHHHHHcC----CCEEEEeccc-CCC
Confidence 35678889999 88899442 2334444 4666777776654 7999999974 444
No 190
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=59.76 E-value=74 Score=25.97 Aligned_cols=44 Identities=23% Similarity=0.178 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHCCCeEEEeecCCCHH----HHHHHHH-hcCEEEeCCCC
Q 028817 109 IAASYVKFVESAGARVIPLIYNEPEE----ILFEKLK-LVNGVLLTGGW 152 (203)
Q Consensus 109 I~~sYVkaVe~AGA~PV~LP~~~~~e----~l~~~Ld-~VDGVLLTGG~ 152 (203)
+.+...++.++.|-.++.+....+.+ .++.+++ .+|||++.+..
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 65 (265)
T cd06299 17 LATAIQDAASAAGYSTIIGNSDENPETENRYLDNLLSQRVDGIIVVPHE 65 (265)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 44444556778898888887654443 2344444 68999998753
No 191
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=59.09 E-value=55 Score=26.21 Aligned_cols=41 Identities=27% Similarity=0.293 Sum_probs=27.6
Q ss_pred HHHHCCCeEEEeecCC-CHHHHHHHH----H--hcCEEEeCCCCCCCC
Q 028817 116 FVESAGARVIPLIYNE-PEEILFEKL----K--LVNGVLLTGGWAKKG 156 (203)
Q Consensus 116 aVe~AGA~PV~LP~~~-~~e~l~~~L----d--~VDGVLLTGG~DVdP 156 (203)
.+++.|+.+.-..... +.+.+++.+ + ..|-|+.+||..+.+
T Consensus 28 ~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s~g~ 75 (152)
T cd00886 28 LLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTGLAP 75 (152)
T ss_pred HHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCC
Confidence 4788998877665433 445555544 4 689999999976544
No 192
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=58.45 E-value=67 Score=26.11 Aligned_cols=44 Identities=18% Similarity=0.119 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHCCCeEEEeecCCCHHH----HHHHH-HhcCEEEeCCCC
Q 028817 109 IAASYVKFVESAGARVIPLIYNEPEEI----LFEKL-KLVNGVLLTGGW 152 (203)
Q Consensus 109 I~~sYVkaVe~AGA~PV~LP~~~~~e~----l~~~L-d~VDGVLLTGG~ 152 (203)
+.+...+++++.|..+++.....+.+. +++++ ..+||+++..+.
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~ 65 (266)
T cd06282 17 CVQGIQEEARAAGYSLLLATTDYDAEREADAVETLLRQRVDGLILTVAD 65 (266)
T ss_pred HHHHHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 444555567788998888766443332 22322 358999986543
No 193
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=58.30 E-value=50 Score=27.13 Aligned_cols=45 Identities=16% Similarity=0.244 Sum_probs=29.5
Q ss_pred hhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHH-----hcCEEEeCCCC
Q 028817 108 YIAASYVKFVESAGARVIPLIYNEPEEILFEKLK-----LVNGVLLTGGW 152 (203)
Q Consensus 108 yI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld-----~VDGVLLTGG~ 152 (203)
.+.....++.+..|..+++.....+.+...++++ .+|||++.+..
T Consensus 16 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~ 65 (264)
T cd06274 16 RIAKRLEALARERGYQLLIACSDDDPETERETVETLIARQVDALIVAGSL 65 (264)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 3444444566778888888876555554445554 68999998753
No 194
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=57.52 E-value=28 Score=28.78 Aligned_cols=43 Identities=21% Similarity=0.283 Sum_probs=27.1
Q ss_pred HHHHH-HHHHCCCeEEEeecC-CCHH----HHHHHHHhcCEEEeCCCCC
Q 028817 111 ASYVK-FVESAGARVIPLIYN-EPEE----ILFEKLKLVNGVLLTGGWA 153 (203)
Q Consensus 111 ~sYVk-aVe~AGA~PV~LP~~-~~~e----~l~~~Ld~VDGVLLTGG~D 153 (203)
..|+. .+++.|..+.-.... ++.+ .+++.++..|-|+.|||.-
T Consensus 21 ~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~G 69 (170)
T cd00885 21 AAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRASERADLVITTGGLG 69 (170)
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 34444 477889877544332 2333 3445556789999999953
No 195
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=57.43 E-value=71 Score=27.03 Aligned_cols=45 Identities=16% Similarity=0.083 Sum_probs=29.6
Q ss_pred hhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHH-----HhcCEEEeCCC
Q 028817 107 SYIAASYVKFVESAGARVIPLIYNEPEEILFEKL-----KLVNGVLLTGG 151 (203)
Q Consensus 107 syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~L-----d~VDGVLLTGG 151 (203)
..+.....+++++.|..+++.....+.+...+.+ .++|||++.+.
T Consensus 15 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 64 (288)
T cd01538 15 IRDRPNFEAALKELGAEVIVQNANGDPAKQISQIENMIAKGVDVLVIAPV 64 (288)
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 3445555566788899998887754444333333 37999999763
No 196
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=56.85 E-value=1.1e+02 Score=25.33 Aligned_cols=43 Identities=19% Similarity=0.315 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHCCCeEEEeecCCC-HHHHHHHH--HhcCEEEeCCC
Q 028817 109 IAASYVKFVESAGARVIPLIYNEP-EEILFEKL--KLVNGVLLTGG 151 (203)
Q Consensus 109 I~~sYVkaVe~AGA~PV~LP~~~~-~e~l~~~L--d~VDGVLLTGG 151 (203)
+.+.--+++++.|-.+++.....+ .+.+.+.+ .++|||++.+.
T Consensus 28 ~~~gi~~~~~~~g~~~~v~~~~~~~~~~~~~~l~~~~~dgiii~~~ 73 (275)
T cd06295 28 LLGGIADALAERGYDLLLSFVSSPDRDWLARYLASGRADGVILIGQ 73 (275)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCchhHHHHHHHHHhCCCCEEEEeCC
Confidence 334444456778888887766443 34455544 47999999764
No 197
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=56.30 E-value=43 Score=28.98 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=30.0
Q ss_pred HHHHHHHHHCCCeEEEeecC-CCHHHHHHHHHhcCEEEeC
Q 028817 111 ASYVKFVESAGARVIPLIYN-EPEEILFEKLKLVNGVLLT 149 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~-~~~e~l~~~Ld~VDGVLLT 149 (203)
..+++.+.+.|..++++-.. .+.++++.+++..||+++-
T Consensus 119 ~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~m 158 (244)
T PRK13125 119 EKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYY 158 (244)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEE
Confidence 45777788889888665443 4578999999999999954
No 198
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=56.16 E-value=8 Score=28.90 Aligned_cols=51 Identities=12% Similarity=0.066 Sum_probs=29.1
Q ss_pred CeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEe
Q 028817 122 ARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGI 183 (203)
Q Consensus 122 A~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gi 183 (203)
+..|+.+-++.+-.+..+...+-||+||||..+++ .+.++|.+.+ .||+.+
T Consensus 41 ~~lvIt~gdR~di~~~a~~~~i~~iIltg~~~~~~-------~v~~la~~~~----i~vi~t 91 (105)
T PF07085_consen 41 GDLVITPGDREDIQLAAIEAGIACIILTGGLEPSE-------EVLELAKELG----IPVIST 91 (105)
T ss_dssp TEEEEEETT-HHHHHHHCCTTECEEEEETT----H-------HHHHHHHHHT-----EEEE-
T ss_pred CeEEEEeCCcHHHHHHHHHhCCCEEEEeCCCCCCH-------HHHHHHHHCC----CEEEEE
Confidence 56677776655555566777789999999987654 3444554444 455443
No 199
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=56.15 E-value=28 Score=34.81 Aligned_cols=69 Identities=22% Similarity=0.339 Sum_probs=42.2
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCC-----------------CHHHHHHHH---
Q 028817 81 NNRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNE-----------------PEEILFEKL--- 140 (203)
Q Consensus 81 ~~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~-----------------~~e~l~~~L--- 140 (203)
..||+|||.....+.-+. .....-..+.--+.|+++|+.|+-.+... +.+.+.+-+
T Consensus 40 ~~kP~IgI~~s~~d~~p~----h~hl~~l~~~vk~~i~~aGg~p~ef~t~~v~DGiamG~~GM~~SL~SRelIAds~e~~ 115 (575)
T COG0129 40 FGKPIIGIANSYNDMVPG----HQHLKDLAQLVKEGIREAGGVPVEFGTIAVCDGIAMGHDGMPYSLPSRELIADSVEEV 115 (575)
T ss_pred cCCCeEEEEeccccCcCc----hhhHHHHHHHHHHHHHHcCCceeEeCCCCccCccccCCCCcccccccHHHHHHHHHHH
Confidence 479999999887553211 11111233333346888999999887631 233332222
Q ss_pred ---HhcCEEEeCCCCC
Q 028817 141 ---KLVNGVLLTGGWA 153 (203)
Q Consensus 141 ---d~VDGVLLTGG~D 153 (203)
..+||+++.||=|
T Consensus 116 ~~~~~~Da~V~i~~CD 131 (575)
T COG0129 116 LSAHPFDGVVLIGGCD 131 (575)
T ss_pred HhccCcceEEEecCCC
Confidence 3589999999977
No 200
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=56.13 E-value=62 Score=26.65 Aligned_cols=44 Identities=14% Similarity=0.180 Sum_probs=27.6
Q ss_pred hhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHH----H-hcCEEEeCC
Q 028817 107 SYIAASYVKFVESAGARVIPLIYNEPEEILFEKL----K-LVNGVLLTG 150 (203)
Q Consensus 107 syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~L----d-~VDGVLLTG 150 (203)
..+.....+++++.|-.+++.....+.+.-.+++ . .+|||++.+
T Consensus 15 ~~~~~gi~~~~~~~gy~v~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~ 63 (269)
T cd06293 15 AELADAVEEEADARGLSLVLCATRNRPERELTYLRWLDTNHVDGLIFVT 63 (269)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeC
Confidence 3455555667788898887776543443223333 2 599999986
No 201
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=55.23 E-value=58 Score=26.47 Aligned_cols=46 Identities=20% Similarity=0.036 Sum_probs=29.3
Q ss_pred hhhhHHHHHHHHHCCCeEEEeecCCCHHHH----HHHHH-hcCEEEeCCCC
Q 028817 107 SYIAASYVKFVESAGARVIPLIYNEPEEIL----FEKLK-LVNGVLLTGGW 152 (203)
Q Consensus 107 syI~~sYVkaVe~AGA~PV~LP~~~~~e~l----~~~Ld-~VDGVLLTGG~ 152 (203)
.-+.....+++++.|...+.+....+.+.. +.+.+ .+||+++.++.
T Consensus 15 ~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~ 65 (267)
T cd06284 15 SEILKGIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRRKQADGIILLDGS 65 (267)
T ss_pred HHHHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEecCC
Confidence 334455556778889888887765544322 23332 69999997653
No 202
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=55.01 E-value=34 Score=26.51 Aligned_cols=45 Identities=20% Similarity=0.257 Sum_probs=27.4
Q ss_pred HHHH-HHHHCCCeEEEeecC-CCHHHHHHH----HHhcCEEEeCCCCCCCC
Q 028817 112 SYVK-FVESAGARVIPLIYN-EPEEILFEK----LKLVNGVLLTGGWAKKG 156 (203)
Q Consensus 112 sYVk-aVe~AGA~PV~LP~~-~~~e~l~~~----Ld~VDGVLLTGG~DVdP 156 (203)
.++. .+++.|+.++..... ++.+.+.+. ++..|-|+.+||.-+.+
T Consensus 21 ~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliittGG~g~g~ 71 (135)
T smart00852 21 PALAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITTGGTGPGP 71 (135)
T ss_pred HHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEcCCCCCCC
Confidence 3444 478899866433322 344444444 45689999999965433
No 203
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=54.81 E-value=63 Score=26.40 Aligned_cols=43 Identities=14% Similarity=0.150 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHCCCeEEEeecCCCHHH----HHHHHH-hcCEEEeCCC
Q 028817 109 IAASYVKFVESAGARVIPLIYNEPEEI----LFEKLK-LVNGVLLTGG 151 (203)
Q Consensus 109 I~~sYVkaVe~AGA~PV~LP~~~~~e~----l~~~Ld-~VDGVLLTGG 151 (203)
+.+..-+++++.|-.+++.....+.+. ++.++. .+|||++++.
T Consensus 18 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~ 65 (269)
T cd06288 18 IILGAQDAAREHGYLLLVVNTGGDDELEAEAVEALLDHRVDGIIYATM 65 (269)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 444444567778988877776544432 233333 5899999874
No 204
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=54.18 E-value=22 Score=32.01 Aligned_cols=88 Identities=24% Similarity=0.331 Sum_probs=53.2
Q ss_pred CchhhhHHHHHHHHHCCCeEEEeecCC-CHH----HHHHHHHhcCEEEeCCCC-----CC---------------CCcCh
Q 028817 105 NASYIAASYVKFVESAGARVIPLIYNE-PEE----ILFEKLKLVNGVLLTGGW-----AK---------------KGLYF 159 (203)
Q Consensus 105 ~~syI~~sYVkaVe~AGA~PV~LP~~~-~~e----~l~~~Ld~VDGVLLTGG~-----DV---------------dP~yY 159 (203)
+.+|+.+. +.+.|-.+--+-... +.+ .+...+++.|=|++|||- |+ |+..+
T Consensus 22 Na~~la~~----L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r~D~vI~tGGLGPT~DDiT~e~vAka~g~~lv~~~~al 97 (255)
T COG1058 22 NAAFLADE----LTELGVDLARITTVGDNPDRIVEALREASERADVVITTGGLGPTHDDLTAEAVAKALGRPLVLDEEAL 97 (255)
T ss_pred hHHHHHHH----HHhcCceEEEEEecCCCHHHHHHHHHHHHhCCCEEEECCCcCCCccHhHHHHHHHHhCCCcccCHHHH
Confidence 45555433 677887765554433 333 455677889999999982 22 44444
Q ss_pred HHHHHHHHH---HHHHHhCCC-----------CcceEeeCCccc---ccccccc
Q 028817 160 QIVEKIFKH---EAIYERKKQ-----------SLVHGITGDVVQ---KDYYTWP 196 (203)
Q Consensus 160 ~~~~~I~~~---AL~~n~~g~-----------~PV~Gic~~~~~---~~~~~~~ 196 (203)
...+..|+. .+..+.++| +||-.+||-.++ +.++..|
T Consensus 98 ~~i~~~~~~r~~~~~~~~~K~A~~P~Ga~~l~NpvG~APG~~v~~~~~~v~~lP 151 (255)
T COG1058 98 AMIEEKYAKRGREMTEANRKQAMLPEGAEVLDNPVGTAPGFVVEGNGKNVYVLP 151 (255)
T ss_pred HHHHHHHHhcCCCCChhhhhhccCCCCCEeCCCCCCCCCeeEEecCCeEEEEeC
Confidence 445555554 334444433 488888888888 4566554
No 205
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=53.37 E-value=71 Score=25.96 Aligned_cols=45 Identities=18% Similarity=0.201 Sum_probs=27.8
Q ss_pred hhhhHHHHHHHHHCCCeEEEeecCCCHHH----HHHHHH-hcCEEEeCCC
Q 028817 107 SYIAASYVKFVESAGARVIPLIYNEPEEI----LFEKLK-LVNGVLLTGG 151 (203)
Q Consensus 107 syI~~sYVkaVe~AGA~PV~LP~~~~~e~----l~~~Ld-~VDGVLLTGG 151 (203)
.-+.+...+++++.|...+......+.+. ++.++. .+|||++.+.
T Consensus 15 ~~~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~ 64 (267)
T cd06283 15 SLVLKGIEDVCRAHGYQVLVCNSDNDPEKEKEYLESLLAYQVDGLIVNPT 64 (267)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEeCC
Confidence 33455555667778888777665443332 233343 6999999775
No 206
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=53.31 E-value=51 Score=27.02 Aligned_cols=46 Identities=17% Similarity=0.046 Sum_probs=28.9
Q ss_pred chhhhHHHHHHHHHCCCeEEEeecCCCHHHH----HHHHH-hcCEEEeCCC
Q 028817 106 ASYIAASYVKFVESAGARVIPLIYNEPEEIL----FEKLK-LVNGVLLTGG 151 (203)
Q Consensus 106 ~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l----~~~Ld-~VDGVLLTGG 151 (203)
+.-+.+..-++.++.|-..+......+.+.- +.+.+ .+|||++.+.
T Consensus 14 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (265)
T cd06291 14 FSELARAVEKELYKKGYKLILCNSDNDPEKEREYLEMLRQNQVDGIIAGTH 64 (265)
T ss_pred HHHHHHHHHHHHHHCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEEecC
Confidence 3444555566778889888877654333322 22333 5999999875
No 207
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=53.20 E-value=60 Score=26.51 Aligned_cols=43 Identities=21% Similarity=0.264 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHCCCeEEEeecCCCHHH----HHHHHH-hcCEEEeCCC
Q 028817 109 IAASYVKFVESAGARVIPLIYNEPEEI----LFEKLK-LVNGVLLTGG 151 (203)
Q Consensus 109 I~~sYVkaVe~AGA~PV~LP~~~~~e~----l~~~Ld-~VDGVLLTGG 151 (203)
+.+.-.+++++.|...++.....+.+. ++.+++ .+|||++.+.
T Consensus 17 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (268)
T cd06298 17 LARGIDDIATMYKYNIILSNSDNDKEKELKVLNNLLAKQVDGIIFMGG 64 (268)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 444444567778888887765443332 333333 7899999864
No 208
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=52.68 E-value=1.1e+02 Score=26.40 Aligned_cols=62 Identities=24% Similarity=0.272 Sum_probs=35.9
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHH----HH-HhcCEEEeCCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFE----KL-KLVNGVLLTGGW 152 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~----~L-d~VDGVLLTGG~ 152 (203)
..+||+....... ..+..+.....+++++.|-..++.....+.+...+ ++ ..+|||++.+..
T Consensus 64 ~~~Igvv~~~~~~--------~~~~~i~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 130 (342)
T PRK10014 64 SGVIGLIVRDLSA--------PFYAELTAGLTEALEAQGRMVFLLQGGKDGEQLAQRFSTLLNQGVDGVVIAGAA 130 (342)
T ss_pred CCEEEEEeCCCcc--------chHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 4588987653221 12333445555667778877776665444333233 22 258999998754
No 209
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=52.10 E-value=53 Score=26.94 Aligned_cols=43 Identities=16% Similarity=0.151 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHCCCeEEEeecCCCHHH----HHHHH-HhcCEEEeCCC
Q 028817 109 IAASYVKFVESAGARVIPLIYNEPEEI----LFEKL-KLVNGVLLTGG 151 (203)
Q Consensus 109 I~~sYVkaVe~AGA~PV~LP~~~~~e~----l~~~L-d~VDGVLLTGG 151 (203)
+.+..-+++++.|-..++.....+.+. ++.++ ..+|||++.+.
T Consensus 17 ~~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~~ 64 (267)
T cd06322 17 LANAMKEEAKKQKVNLIVSIANQDLNKQLSDVEDFITKKVDAIVLSPV 64 (267)
T ss_pred HHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 445555567778888877665433332 22222 36899999753
No 210
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=50.65 E-value=32 Score=28.38 Aligned_cols=42 Identities=26% Similarity=0.196 Sum_probs=31.4
Q ss_pred HHHHHHHHCCCeEEEeecCC-----CHHHHHHHHH-----hcCEEEeCCCCC
Q 028817 112 SYVKFVESAGARVIPLIYNE-----PEEILFEKLK-----LVNGVLLTGGWA 153 (203)
Q Consensus 112 sYVkaVe~AGA~PV~LP~~~-----~~e~l~~~Ld-----~VDGVLLTGG~D 153 (203)
.+.+.+++.|+.++.+|... +.+.++..++ ..|+|+||-...
T Consensus 2 ~l~~~l~~~G~~~~~~P~i~~~~~~~~~~l~~~l~~l~~~~~d~viftS~~a 53 (231)
T PF02602_consen 2 ELAALLRALGAEVIELPLIEIEPLPDLASLEAALEQLPPGNYDWVIFTSPNA 53 (231)
T ss_dssp HHHHHHHHTTEEEEEEESEEEEECCHHHHHHHHHHHHTGCCSSEEEESSHHH
T ss_pred HHHHHHHHCCCcEEEECCEEEEeCCCHHHHHHHHHhcccCCCCEEEEECHHH
Confidence 46678999999999999843 2344555555 889999998643
No 211
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=50.61 E-value=8.6 Score=37.77 Aligned_cols=56 Identities=23% Similarity=0.283 Sum_probs=35.4
Q ss_pred HHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCC-C---CCcChHHHHHHHHHHHHHHhCCCCcceEee
Q 028817 117 VESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWA-K---KGLYFQIVEKIFKHEAIYERKKQSLVHGIT 184 (203)
Q Consensus 117 Ve~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~D-V---dP~yY~~~~~I~~~AL~~n~~g~~PV~Gic 184 (203)
|++.....-++|.+.....+.+ ...-||+++||.. | +-..|+. .||+.. -||+|||
T Consensus 36 vRel~v~se~~p~~t~~~~i~~--~~~rgiIiSGGP~SVya~dAP~~dp--~if~~~--------vpvLGIC 95 (552)
T KOG1622|consen 36 VRELNVQSEILPLTTPAKTITE--YGPRGIIISGGPNSVYAEDAPSFDP--AIFELG--------VPVLGIC 95 (552)
T ss_pred HHHHhhhhhhccCCChhhhhhc--CCceEEEEeCCCCccccCcCCCCCh--hHhccC--------Ccceeeh
Confidence 5556666677887655554443 5677999999963 2 2223332 344443 6999999
No 212
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=50.55 E-value=74 Score=26.04 Aligned_cols=43 Identities=16% Similarity=0.155 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHCCCeEEEeecCCCHH----HHHHHHH-hcCEEEeCCC
Q 028817 109 IAASYVKFVESAGARVIPLIYNEPEE----ILFEKLK-LVNGVLLTGG 151 (203)
Q Consensus 109 I~~sYVkaVe~AGA~PV~LP~~~~~e----~l~~~Ld-~VDGVLLTGG 151 (203)
+.+..-++.++.|..+++.....+.+ .++.+.+ .+|||++.+.
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (269)
T cd06275 17 VVRGVEQYCYRQGYNLILCNTEGDPERQRSYLRMLAQKRVDGLLVMCS 64 (269)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecC
Confidence 44555556777898888776554443 2334443 5899999875
No 213
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=50.45 E-value=1e+02 Score=26.26 Aligned_cols=62 Identities=18% Similarity=0.110 Sum_probs=35.9
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHH----HHHHHH-hcCEEEeCCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEI----LFEKLK-LVNGVLLTGGW 152 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~----l~~~Ld-~VDGVLLTGG~ 152 (203)
..+||+....... ..+..+.+..-+.+++.|-..++.....+.+. ++.+++ .+|||++.+..
T Consensus 56 ~~~Igvi~~~~~~--------~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~ 122 (327)
T PRK10423 56 TRTIGMLITASTN--------PFYSELVRGVERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTE 122 (327)
T ss_pred CCeEEEEeCCCCC--------CcHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 3589987643221 12333455555667778888777665433332 333334 59999998743
No 214
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=50.44 E-value=87 Score=26.88 Aligned_cols=62 Identities=19% Similarity=0.201 Sum_probs=34.6
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHH-----hcCEEEeCCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKLK-----LVNGVLLTGGW 152 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld-----~VDGVLLTGG~ 152 (203)
..+||+....... .....+.+.-.+.+++.|-..++.....+.+...++++ ++|||++.+..
T Consensus 59 ~~~Ig~i~~~~~~--------~~~~~~~~~i~~~~~~~gy~~~i~~~~~~~~~~~~~~~~l~~~~vdGvIi~~~~ 125 (311)
T TIGR02405 59 DKVVAVIVSRLDS--------PSENLAVSGMLPVFYTAGYDPIIMESQFSPQLTNEHLSVLQKRNVDGVILFGFT 125 (311)
T ss_pred CCEEEEEeCCccc--------ccHHHHHHHHHHHHHHCCCeEEEecCCCChHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 3589987642111 11122333434456778988877765444443333333 59999998743
No 215
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=50.44 E-value=1.1e+02 Score=27.46 Aligned_cols=59 Identities=15% Similarity=0.070 Sum_probs=42.8
Q ss_pred HHHHHHH-CCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCC-----CcChHHHHHHHHHHHH
Q 028817 113 YVKFVES-AGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKK-----GLYFQIVEKIFKHEAI 171 (203)
Q Consensus 113 YVkaVe~-AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVd-----P~yY~~~~~I~~~AL~ 171 (203)
.++.+.+ .+.+||+|-...+.+.+.++++..||+++.-+--.+ +.-.+.++.+++.+.+
T Consensus 190 ~l~~vr~~~~~~PvllggGvt~eNv~e~l~~adGviVgS~~K~~G~~~n~~D~~rV~~Fm~~v~~ 254 (257)
T TIGR00259 190 LLKLAKETVKDTPVLAGSGVNLENVEELLSIADGVIVATTIKKDGVFNNFVDQARVSQFVEKVAH 254 (257)
T ss_pred HHHHHHhccCCCeEEEECCCCHHHHHHHHhhCCEEEECCCcccCCccCCCcCHHHHHHHHHHHHH
Confidence 3444544 567899999988999999999999999995443322 3445678888887744
No 216
>PRK09739 hypothetical protein; Provisional
Probab=50.24 E-value=1.3e+02 Score=24.74 Aligned_cols=76 Identities=13% Similarity=0.137 Sum_probs=47.8
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCC------------------------CHHHHHH
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNE------------------------PEEILFE 138 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~------------------------~~e~l~~ 138 (203)
+.|+.|.++++.. .....+.+.+++.++++|..+..+-... +.+.+.+
T Consensus 4 mkiliI~~sp~~~--------s~s~~l~~~~~~~~~~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (199)
T PRK09739 4 MRIYLVWAHPRHD--------SLTAKVAEAIHQRAQERGHQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYS 75 (199)
T ss_pred ceEEEEEcCCCCC--------CcHHHHHHHHHHHHHHCCCEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHH
Confidence 3477788887542 2345678888888988887665553211 1134556
Q ss_pred HHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHH
Q 028817 139 KLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAI 171 (203)
Q Consensus 139 ~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~ 171 (203)
.+...|+|+| ..|.|+...-.++|-.++
T Consensus 76 ~l~~AD~iV~-----~~P~y~~~~Pa~LK~~iD 103 (199)
T PRK09739 76 ELLEHDALVF-----VFPLWWYSFPAMLKGYID 103 (199)
T ss_pred HHHhCCEEEE-----ECchhhhcchHHHHHHHH
Confidence 6777899998 568888664444444433
No 217
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=49.85 E-value=64 Score=31.55 Aligned_cols=62 Identities=13% Similarity=0.111 Sum_probs=39.7
Q ss_pred HHHHHCCCeEEE-eecCCCHHHHHHHHH-hcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCC-cce
Q 028817 115 KFVESAGARVIP-LIYNEPEEILFEKLK-LVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQS-LVH 181 (203)
Q Consensus 115 kaVe~AGA~PV~-LP~~~~~e~l~~~Ld-~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~-PV~ 181 (203)
++...|||+++- +-+..+..+++++.+ +-|-|||+||-| +++.+.+.+.|......+-. ||.
T Consensus 91 ~AAlgAGA~V~~~~a~~l~~~~l~~I~~~~PDIILLaGGtD-----GG~~e~~l~NA~~La~~~~~~pII 155 (463)
T TIGR01319 91 RAAHGAGAKIANVYAYDLNNKDIEAIEESNLDIILFAGGTD-----GGEEECGIHNAKMLAEHGLDCAII 155 (463)
T ss_pred HHHhcCCcEEEEEEeecCCHHHHHHHhhcCCCEEEEeCCcC-----CCchHHHHHHHHHHHhcCCCCcEE
Confidence 456779999987 555566667776655 579999999988 44444444444443333332 643
No 218
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=49.53 E-value=1.4e+02 Score=25.63 Aligned_cols=61 Identities=10% Similarity=0.150 Sum_probs=33.5
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHH-----HhcCEEEeCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKL-----KLVNGVLLTGG 151 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~L-----d~VDGVLLTGG 151 (203)
...||+....... ..+..+.+..-+++++.|-..++.....+.+.-.+++ ..+|||++.+.
T Consensus 61 ~~~Igvv~~~~~~--------~~~~~l~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 126 (328)
T PRK11303 61 TRSIGLIIPDLEN--------TSYARIAKYLERQARQRGYQLLIACSDDQPDNEMRCAEHLLQRQVDALIVSTS 126 (328)
T ss_pred CceEEEEeCCCCC--------chHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 4588987642211 1122344444455677888877765443333222222 36899999765
No 219
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=49.49 E-value=43 Score=29.79 Aligned_cols=40 Identities=20% Similarity=0.229 Sum_probs=34.5
Q ss_pred HHHHHHCCCeEEEeecCC-CHHHHHHHHHhcCEEEeCCCCC
Q 028817 114 VKFVESAGARVIPLIYNE-PEEILFEKLKLVNGVLLTGGWA 153 (203)
Q Consensus 114 VkaVe~AGA~PV~LP~~~-~~e~l~~~Ld~VDGVLLTGG~D 153 (203)
-++++..|..+.-|+... +.+.++.+|...|+|++.||.-
T Consensus 55 ~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgGGNT 95 (224)
T COG3340 55 RNALAKLGLEVSELHLSKPPLAAIENKLMKADIIYVGGGNT 95 (224)
T ss_pred HHHHHHcCCeeeeeeccCCCHHHHHHhhhhccEEEECCchH
Confidence 357888999999998764 6788999999999999999975
No 220
>PRK08211 putative dehydratase; Provisional
Probab=49.35 E-value=1.7e+02 Score=29.99 Aligned_cols=98 Identities=9% Similarity=0.027 Sum_probs=55.1
Q ss_pred CCCCEEEEcCCCCCCCCCCC-------CCCC-CchhhhHHHHHHHHHCCCeEEEeecCC-----------------CHH-
Q 028817 81 NNRPVIGILSHPGDGASGRL-------NNSK-NASYIAASYVKFVESAGARVIPLIYNE-----------------PEE- 134 (203)
Q Consensus 81 ~~rPVIGIta~~~~~~~~~~-------~~~~-~~syI~~sYVkaVe~AGA~PV~LP~~~-----------------~~e- 134 (203)
..||.|||.....+-..... ..++ ...-+.+.--+.|.++|+.|+-+.... +.+
T Consensus 59 l~kP~IgI~nt~~~~~~~~~~~~~~~~~pgh~hL~~l~~~vk~gi~~aGG~P~ef~ti~vcDGit~G~~GM~ySL~sRel 138 (655)
T PRK08211 59 LLGKQFLILSTQGGIRAADGTPIALGYHTGHWEVGLLMKAAAEEIKRNGGIPFAGYVSDPCDGRTQGTTGMFDSLPYRND 138 (655)
T ss_pred cCCCEEEEEeCCccccccccccccCCCcCCchhHHHHHHHHHHHHHHcCCeeEEeCCCCCcCccccCCccceechhhHHH
Confidence 46999999877652000000 1111 111233333346889999999887631 123
Q ss_pred ---HHHHHHHh---cCEEEeCCCCCC-CCcChHHHHHHHHHHHHHHhCCCCcceEeeCCcc
Q 028817 135 ---ILFEKLKL---VNGVLLTGGWAK-KGLYFQIVEKIFKHEAIYERKKQSLVHGITGDVV 188 (203)
Q Consensus 135 ---~l~~~Ld~---VDGVLLTGG~DV-dP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~~ 188 (203)
.++.++.- .||+++.||=|+ -|.. ++ -+-...|.|-.-+.||+.
T Consensus 139 IA~siE~~~~a~~~~DGvV~l~~CDK~~PGm------LM----Aaa~~~niPsI~V~GGpm 189 (655)
T PRK08211 139 AAIVFRRLIRSLPTRKAVIGVATCDKGLPAM------MM----ALAGMHDLPTVLVPGGVT 189 (655)
T ss_pred HHHHHHHHHcccCcCCeEEEeCcCCCchHHH------HH----HHHHcCCCCEEEEeCCCC
Confidence 33444443 799999999883 4432 11 112233478888888875
No 221
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=49.24 E-value=1.4e+02 Score=24.84 Aligned_cols=68 Identities=12% Similarity=-0.025 Sum_probs=38.6
Q ss_pred hhhHHHHHHHHHCCCeEEEeecCCCHH----HHHHHHH-hcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceE
Q 028817 108 YIAASYVKFVESAGARVIPLIYNEPEE----ILFEKLK-LVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHG 182 (203)
Q Consensus 108 yI~~sYVkaVe~AGA~PV~LP~~~~~e----~l~~~Ld-~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~G 182 (203)
-+.+...+++++.|...++.... +.+ .++.+++ ++|||++.+.. + .....+++.+.+.+ .||..
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~-~~~~~~~~i~~~~~~~~dgiii~~~~---~---~~~~~~~~~~~~~~----iPvV~ 84 (289)
T cd01540 16 TEWKFAKKAAKEKGFTVVKIDVP-DGEKVLSAIDNLGAQGAKGFVICVPD---V---KLGPAIVAKAKAYN----MKVVA 84 (289)
T ss_pred HHHHHHHHHHHHcCCEEEEccCC-CHHHHHHHHHHHHHcCCCEEEEccCc---h---hhhHHHHHHHHhCC----CeEEE
Confidence 34455556778889888877554 332 2333344 59999998632 1 12334455544433 68776
Q ss_pred eeCC
Q 028817 183 ITGD 186 (203)
Q Consensus 183 ic~~ 186 (203)
+-..
T Consensus 85 ~~~~ 88 (289)
T cd01540 85 VDDR 88 (289)
T ss_pred ecCC
Confidence 5433
No 222
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=48.97 E-value=64 Score=28.88 Aligned_cols=61 Identities=13% Similarity=0.084 Sum_probs=43.3
Q ss_pred hHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCC-----CCCcChHHHHHHHHHHH
Q 028817 110 AASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWA-----KKGLYFQIVEKIFKHEA 170 (203)
Q Consensus 110 ~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~D-----VdP~yY~~~~~I~~~AL 170 (203)
.-..++.++++-..||++-..-+.+.+.++|+.+||++.--.-- -+|--.+.++.+++.+.
T Consensus 188 ~~~~l~~vr~~~~~PVlvGSGvt~~Ni~~~l~~ADG~IVGS~~K~~G~~~n~VD~~Rv~~fm~~v~ 253 (254)
T PF03437_consen 188 DPEKLKRVREAVPVPVLVGSGVTPENIAEYLSYADGAIVGSYFKKDGKWENPVDPERVRRFMEAVK 253 (254)
T ss_pred CHHHHHHHHhcCCCCEEEecCCCHHHHHHHHHhCCEEEEeeeeeeCCEeCCcCCHHHHHHHHHHhh
Confidence 34556666553338999988889999999999999998753222 23444467888888764
No 223
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=47.85 E-value=1.1e+02 Score=26.41 Aligned_cols=61 Identities=20% Similarity=0.123 Sum_probs=36.3
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHH----HHHHHH-hcCEEEeCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEI----LFEKLK-LVNGVLLTGG 151 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~----l~~~Ld-~VDGVLLTGG 151 (203)
.-+||+....... ..+..+.+..-+.+++.|...++.....+.+. ++.++. .+|||++.++
T Consensus 59 ~~~i~vi~~~~~~--------~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 124 (341)
T PRK10703 59 TKSIGLLATSSEA--------PYFAEIIEAVEKNCYQKGYTLILCNAWNNLEKQRAYLSMLAQKRVDGLLVMCS 124 (341)
T ss_pred CCeEEEEeCCCCC--------chHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 3588987653221 12344555555667778988877765433332 333333 5899998875
No 224
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=47.70 E-value=28 Score=25.16 Aligned_cols=10 Identities=50% Similarity=0.687 Sum_probs=7.2
Q ss_pred EEeCCCCCCC
Q 028817 146 VLLTGGWAKK 155 (203)
Q Consensus 146 VLLTGG~DVd 155 (203)
|+|+||.|..
T Consensus 6 Vli~GgR~~~ 15 (71)
T PF10686_consen 6 VLITGGRDWT 15 (71)
T ss_pred EEEEECCccc
Confidence 6788887754
No 225
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=47.56 E-value=1.6e+02 Score=25.25 Aligned_cols=61 Identities=11% Similarity=0.139 Sum_probs=34.5
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHH-----HhcCEEEeCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKL-----KLVNGVLLTGG 151 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~L-----d~VDGVLLTGG 151 (203)
...||+....... ..+..+....-+.+++.|-..++.....+.+.-.+++ ..+|||++.+.
T Consensus 60 ~~~Igvi~~~~~~--------~~~~~~~~~i~~~~~~~gy~~~i~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 125 (327)
T TIGR02417 60 SRTIGLVIPDLEN--------YSYARIAKELEQQCREAGYQLLIACSDDNPDQEKVVIENLLARQVDALIVASC 125 (327)
T ss_pred CceEEEEeCCCCC--------ccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3588987643211 1222344444456677898888776654433222222 36899999764
No 226
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=47.56 E-value=86 Score=25.77 Aligned_cols=43 Identities=14% Similarity=0.169 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHCCCeEEEeecCCCHHHHHHHH-----HhcCEEEeCCC
Q 028817 109 IAASYVKFVESAGARVIPLIYNEPEEILFEKL-----KLVNGVLLTGG 151 (203)
Q Consensus 109 I~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~L-----d~VDGVLLTGG 151 (203)
+.+...+..++.|...++.....+.+.-.+++ ..+||+++.+.
T Consensus 17 ~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgii~~~~ 64 (268)
T cd06270 17 LLSGVESVARKAGKHLIITAGHHSAEKEREAIEFLLERRCDALILHSK 64 (268)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCchHHHHHHHHHHHHcCCCEEEEecC
Confidence 44444556777888887766543333222222 36899998864
No 227
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=47.48 E-value=53 Score=31.27 Aligned_cols=57 Identities=16% Similarity=0.175 Sum_probs=36.2
Q ss_pred HHHHHHHHCCCeEEEeecC--------------CCHHHHHHHHH-----hcCEEEe------CCCCCCCCcChHHHHHHH
Q 028817 112 SYVKFVESAGARVIPLIYN--------------EPEEILFEKLK-----LVNGVLL------TGGWAKKGLYFQIVEKIF 166 (203)
Q Consensus 112 sYVkaVe~AGA~PV~LP~~--------------~~~e~l~~~Ld-----~VDGVLL------TGG~DVdP~yY~~~~~I~ 166 (203)
.|...++.+|+.++.++.. .+.+.+++.+. +.-.|++ +||..++... .+.|.
T Consensus 128 ~~~~~i~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~---l~~I~ 204 (460)
T PRK13238 128 TTRAHIELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMAN---LRAVY 204 (460)
T ss_pred chHHHHHHcCCEEEEEeccccccccccccccCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHH---HHHHH
Confidence 4556788899999998863 34567777776 3557776 3666555333 34444
Q ss_pred HHHHH
Q 028817 167 KHEAI 171 (203)
Q Consensus 167 ~~AL~ 171 (203)
+.+.+
T Consensus 205 ~ia~~ 209 (460)
T PRK13238 205 EIAKK 209 (460)
T ss_pred HHHHH
Confidence 44443
No 228
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=47.21 E-value=1.8e+02 Score=24.89 Aligned_cols=43 Identities=12% Similarity=0.092 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHCCCeEEEeecCCCH----HHHHHHHH---hcCEEEeCCC
Q 028817 109 IAASYVKFVESAGARVIPLIYNEPE----EILFEKLK---LVNGVLLTGG 151 (203)
Q Consensus 109 I~~sYVkaVe~AGA~PV~LP~~~~~----e~l~~~Ld---~VDGVLLTGG 151 (203)
+.+..-+++++.|..+++.....+. +.++.+++ .+|||++.+.
T Consensus 18 ~~~gi~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~~vdgiIi~~~ 67 (305)
T cd06324 18 VARFMQAAADDLGIELEVLYAERDRFLMLQQARTILQRPDKPDALIFTNE 67 (305)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHhccCCCEEEEcCC
Confidence 3334444567789888877654333 23445666 6999999764
No 229
>PRK05569 flavodoxin; Provisional
Probab=47.02 E-value=1.2e+02 Score=23.28 Aligned_cols=75 Identities=13% Similarity=0.103 Sum_probs=44.5
Q ss_pred CchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChH------HHHHHHHHHHHHHhCCCC
Q 028817 105 NASYIAASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQ------IVEKIFKHEAIYERKKQS 178 (203)
Q Consensus 105 ~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~------~~~~I~~~AL~~n~~g~~ 178 (203)
+...+.+...+.+++.|+.+-+........ ..+...|+|+|-- |.|++ ..+.+++.....+-+|..
T Consensus 14 nT~~iA~~i~~~~~~~g~~v~~~~~~~~~~---~~~~~~d~iilgs-----Pty~~~~~~~~~~~~~~~~l~~~~~~~K~ 85 (141)
T PRK05569 14 NVEVLANTIADGAKEAGAEVTIKHVADAKV---EDVLEADAVAFGS-----PSMDNNNIEQEEMAPFLDQFKLTPNENKK 85 (141)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEECCcCCH---HHHhhCCEEEEEC-----CCcCCCcCChHHHHHHHHHhhccCcCCCE
Confidence 345677777777888888766665433221 2467889999843 33332 345666654333334555
Q ss_pred -cceEeeCCc
Q 028817 179 -LVHGITGDV 187 (203)
Q Consensus 179 -PV~Gic~~~ 187 (203)
=++|+||..
T Consensus 86 v~~f~t~g~~ 95 (141)
T PRK05569 86 CILFGSYGWD 95 (141)
T ss_pred EEEEeCCCCC
Confidence 777888743
No 230
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=46.35 E-value=73 Score=26.09 Aligned_cols=43 Identities=14% Similarity=0.078 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHH-hcCEEEeCCC
Q 028817 109 IAASYVKFVESAGARVIPLIYNEPEEILFEKLK-LVNGVLLTGG 151 (203)
Q Consensus 109 I~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld-~VDGVLLTGG 151 (203)
+.+...++.++.|...++.......+.++.+.. ++|||++.+.
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 60 (261)
T cd06272 17 LVTGINQAISKNGYNMNVSITPSLAEAEDLFKENRFDGVIIFGE 60 (261)
T ss_pred HHHHHHHHHHHcCCEEEEEecccHHHHHHHHHHcCcCEEEEeCC
Confidence 445555567778877777655422233333333 7999998764
No 231
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=45.89 E-value=1.9e+02 Score=24.56 Aligned_cols=61 Identities=8% Similarity=-0.007 Sum_probs=33.3
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHH----HHHH-HhcCEEEeCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEIL----FEKL-KLVNGVLLTGG 151 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l----~~~L-d~VDGVLLTGG 151 (203)
+-+||+....... ..+.-+....-+++++.|-..++.....+.+.. +.+. ..+||+++.+.
T Consensus 26 ~~~I~vi~~~~~~--------~f~~~~~~~i~~~~~~~G~~~~~~~~~~d~~~~~~~~~~l~~~~~dgiii~~~ 91 (295)
T PRK10653 26 KDTIALVVSTLNN--------PFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPT 91 (295)
T ss_pred CCeEEEEecCCCC--------hHHHHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 4478876643211 123344455556677788777776543333322 2333 35888888653
No 232
>PRK09492 treR trehalose repressor; Provisional
Probab=45.78 E-value=1.3e+02 Score=25.67 Aligned_cols=60 Identities=23% Similarity=0.227 Sum_probs=34.5
Q ss_pred CEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHH-----HhcCEEEeCCC
Q 028817 84 PVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKL-----KLVNGVLLTGG 151 (203)
Q Consensus 84 PVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~L-----d~VDGVLLTGG 151 (203)
.+||+....... .....+.+...+.+++.|-..++.....+.+...+.+ ..+||+++.+.
T Consensus 63 ~~Ig~i~~~~~~--------~~~~~~~~~i~~~~~~~gy~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 127 (315)
T PRK09492 63 KVVGIIVSRLDS--------LSENQAVRTMLPAFYEQGYDPIIMESQFSPEKVNEHLGVLKRRNVDGVILFGF 127 (315)
T ss_pred CeEEEEecCCcC--------cccHHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHhcCCCEEEEeCC
Confidence 478987643221 1223344555566778898877776544433222222 25899999763
No 233
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=45.38 E-value=96 Score=25.35 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHCCCeEEEeecCCCHH----HHHHHHH-hcCEEEeCCC
Q 028817 109 IAASYVKFVESAGARVIPLIYNEPEE----ILFEKLK-LVNGVLLTGG 151 (203)
Q Consensus 109 I~~sYVkaVe~AGA~PV~LP~~~~~e----~l~~~Ld-~VDGVLLTGG 151 (203)
+...-.+.+++.|...++.....+.+ .++.+++ .+|||++.|.
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 64 (268)
T cd06273 17 VIQAFQETLAAHGYTLLVASSGYDLDREYAQARKLLERGVDGLALIGL 64 (268)
T ss_pred HHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 33444556777898888765443333 2344455 4999999864
No 234
>PLN03034 phosphoglycerate kinase; Provisional
Probab=45.33 E-value=56 Score=32.10 Aligned_cols=74 Identities=12% Similarity=0.050 Sum_probs=49.5
Q ss_pred HHHHHHCCCeEEEeecCC-----CHHHHHHHHHhcCEEEeCCCC----------C-----CCCcChHHHHHHHHHHHHHH
Q 028817 114 VKFVESAGARVIPLIYNE-----PEEILFEKLKLVNGVLLTGGW----------A-----KKGLYFQIVEKIFKHEAIYE 173 (203)
Q Consensus 114 VkaVe~AGA~PV~LP~~~-----~~e~l~~~Ld~VDGVLLTGG~----------D-----VdP~yY~~~~~I~~~AL~~n 173 (203)
+..+.....+|++.-... ....++.+++.+|.||+.||- + ++....+.++.|++++.+++
T Consensus 258 L~k~~~~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tFl~A~G~~IG~slvE~d~i~~A~~il~~a~~~g 337 (481)
T PLN03034 258 LVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLELATSLLAKAKAKG 337 (481)
T ss_pred HHHHHcCCCCceEEEEcCccHHhHHHHHHHHHHhcCEEEECcHHHHHHHHHcCCCcchhhcChhhhHHHHHHHHHHHhcC
Confidence 333444567776665532 235788899999999999972 2 35556677888888887665
Q ss_pred hCCCCcceEeeCCc
Q 028817 174 RKKQSLVHGITGDV 187 (203)
Q Consensus 174 ~~g~~PV~Gic~~~ 187 (203)
.+=-.||=-+|...
T Consensus 338 v~I~lPvD~v~a~~ 351 (481)
T PLN03034 338 VSLLLPTDVVIADK 351 (481)
T ss_pred CEEECCceEEEecc
Confidence 44444886666653
No 235
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=44.65 E-value=62 Score=28.98 Aligned_cols=33 Identities=12% Similarity=-0.062 Sum_probs=23.0
Q ss_pred CCCcChHH-----HHHHHHHHHHHHhCCCCcceEeeCCcc
Q 028817 154 KKGLYFQI-----VEKIFKHEAIYERKKQSLVHGITGDVV 188 (203)
Q Consensus 154 VdP~yY~~-----~~~I~~~AL~~n~~g~~PV~Gic~~~~ 188 (203)
+.|..|++ .++|++.+.+. .|..||+-||||+-
T Consensus 207 lsp~~f~ef~~p~~k~i~~~i~~~--~~~~~ilh~cg~~~ 244 (338)
T TIGR01464 207 LSPEDFEEFVLPYLKKIIEEVKAR--LPNVPVILFAKGAG 244 (338)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHh--CCCCCEEEEeCCcH
Confidence 88999976 35555554432 25679999999984
No 236
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=44.42 E-value=1.2e+02 Score=24.78 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=26.5
Q ss_pred hhhHHHHHHHHHCCCeEEEeecCCCHH----HHHHHH--HhcCEEEeCCCC
Q 028817 108 YIAASYVKFVESAGARVIPLIYNEPEE----ILFEKL--KLVNGVLLTGGW 152 (203)
Q Consensus 108 yI~~sYVkaVe~AGA~PV~LP~~~~~e----~l~~~L--d~VDGVLLTGG~ 152 (203)
.+....-+++++.|-..++.....+.+ .+.+.+ ..+|||++..+.
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~ 66 (270)
T cd01545 16 EIQLGALDACRDTGYQLVIEPCDSGSPDLAERVRALLQRSRVDGVILTPPL 66 (270)
T ss_pred HHHHHHHHHHHhCCCeEEEEeCCCCchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 344444456677888877776653322 233322 358999988664
No 237
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=44.40 E-value=1.1e+02 Score=24.64 Aligned_cols=74 Identities=14% Similarity=0.148 Sum_probs=43.1
Q ss_pred EEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecC--------------CCHHHHHHHHHhcCEEEeCC
Q 028817 85 VIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYN--------------EPEEILFEKLKLVNGVLLTG 150 (203)
Q Consensus 85 VIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~--------------~~~e~l~~~Ld~VDGVLLTG 150 (203)
|++|.++++.. .....+.+..++.++..|.....+-.. ...+.+.+.+...|||+|
T Consensus 2 il~I~gS~r~~--------S~t~~l~~~~~~~l~~~~~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~-- 71 (171)
T TIGR03567 2 VLTLSGSPSTP--------SRSSALLRHVREALQEQGVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVV-- 71 (171)
T ss_pred EEEEECCCCCC--------ChHHHHHHHHHHHHHHCCCeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEE--
Confidence 67787877542 123345566666777777655444221 011345566677799998
Q ss_pred CCCCCCcChHHHHHHHHHHHH
Q 028817 151 GWAKKGLYFQIVEKIFKHEAI 171 (203)
Q Consensus 151 G~DVdP~yY~~~~~I~~~AL~ 171 (203)
+.|.|.....-.+|-+++
T Consensus 72 ---~sP~Y~~sip~~LK~~iD 89 (171)
T TIGR03567 72 ---ATPVYKASYSGVLKALLD 89 (171)
T ss_pred ---ECCcccCCCCHHHHHHHH
Confidence 568888655444444444
No 238
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=44.24 E-value=1.7e+02 Score=25.19 Aligned_cols=40 Identities=23% Similarity=0.247 Sum_probs=21.5
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHHHHHHHH-----HhcCEEEeCC
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEEILFEKL-----KLVNGVLLTG 150 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e~l~~~L-----d~VDGVLLTG 150 (203)
+..-++.++.|...++.....+.+.-.+++ ..+|||++.+
T Consensus 18 ~~i~~~a~~~g~~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~ 62 (302)
T TIGR02634 18 DIFVAAAESLGAKVFVQSANGNEAKQISQIENLIARGVDVLVIIP 62 (302)
T ss_pred HHHHHHHHhcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 333345566777776665543333222233 3378888865
No 239
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=44.17 E-value=1.8e+02 Score=23.86 Aligned_cols=46 Identities=4% Similarity=-0.046 Sum_probs=26.6
Q ss_pred hhhhHHHHHHHHH-CCCeEEEeecCCCHH----HHHHHHH-hcCEEEeCCCC
Q 028817 107 SYIAASYVKFVES-AGARVIPLIYNEPEE----ILFEKLK-LVNGVLLTGGW 152 (203)
Q Consensus 107 syI~~sYVkaVe~-AGA~PV~LP~~~~~e----~l~~~Ld-~VDGVLLTGG~ 152 (203)
..+.+.-.++.++ .|-..++.....+.+ .++.+++ .+||+++.+..
T Consensus 15 ~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~ 66 (272)
T cd06301 15 TLLRNAMKEHAKVLGGVELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPVD 66 (272)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 3344555556666 677777665433333 2333333 79999997643
No 240
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=44.00 E-value=1.6e+02 Score=24.25 Aligned_cols=43 Identities=14% Similarity=0.085 Sum_probs=22.5
Q ss_pred hhhHHHHHHHHH--CCCeEEEeecCCCHHHHHHH-----HHhcCEEEeCC
Q 028817 108 YIAASYVKFVES--AGARVIPLIYNEPEEILFEK-----LKLVNGVLLTG 150 (203)
Q Consensus 108 yI~~sYVkaVe~--AGA~PV~LP~~~~~e~l~~~-----Ld~VDGVLLTG 150 (203)
-+...-.+++++ .|-.++......+.+...+. -..+|||++.+
T Consensus 16 ~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiIi~~ 65 (271)
T cd06321 16 ALAKGAEAAAKKLNPGVKVTVVSADYDLNKQVSQIDNFIAAKVDLILLNA 65 (271)
T ss_pred HHHHHHHHHHHHhCCCeEEEEccCCCCHHHHHHHHHHHHHhCCCEEEEeC
Confidence 344555556666 55555555443333222222 23788888865
No 241
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=44.00 E-value=1.1e+02 Score=24.85 Aligned_cols=44 Identities=23% Similarity=0.180 Sum_probs=26.5
Q ss_pred hhhHHHHHHHHHCCCeEEEeecCCCHH----HHHHHHH-hcCEEEeCCC
Q 028817 108 YIAASYVKFVESAGARVIPLIYNEPEE----ILFEKLK-LVNGVLLTGG 151 (203)
Q Consensus 108 yI~~sYVkaVe~AGA~PV~LP~~~~~e----~l~~~Ld-~VDGVLLTGG 151 (203)
-+.+..-+++++.|-..++.....+.+ .++.+.+ .+|||++.+.
T Consensus 16 ~i~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (260)
T cd06286 16 QLVDGIEKAALKHGYKVVLLQTNYDKEKELEYLELLKTKQVDGLILCSR 64 (260)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCC
Confidence 344555556667788887777654443 2333333 4899998764
No 242
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=43.55 E-value=1.4e+02 Score=22.36 Aligned_cols=81 Identities=19% Similarity=0.205 Sum_probs=53.0
Q ss_pred CchhhhHHHHHH-HHHCCCeEEEeecCCCHHHHHHHHHhc--CEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcce
Q 028817 105 NASYIAASYVKF-VESAGARVIPLIYNEPEEILFEKLKLV--NGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVH 181 (203)
Q Consensus 105 ~~syI~~sYVka-Ve~AGA~PV~LP~~~~~e~l~~~Ld~V--DGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~ 181 (203)
..+.+...++.. +++.|..++.+-...+.+++.+.+... |-|.|+.. ....+..++.+.+...+.+. +...+
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~iS~~---~~~~~~~~~~~i~~l~~~~~--~~~~i 84 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSGL---LTTHMTLMKEVIEELKEAGL--DDIPV 84 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecc---ccccHHHHHHHHHHHHHcCC--CCCeE
Confidence 345677777775 577899998887777777776666655 77888665 34566778888887776532 23444
Q ss_pred EeeCCcccc
Q 028817 182 GITGDVVQK 190 (203)
Q Consensus 182 Gic~~~~~~ 190 (203)
.+.|-....
T Consensus 85 ~vGG~~~~~ 93 (119)
T cd02067 85 LVGGAIVTR 93 (119)
T ss_pred EEECCCCCh
Confidence 444544443
No 243
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=43.29 E-value=82 Score=24.37 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=27.2
Q ss_pred CEEEeCCCCC-CCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCcccc
Q 028817 144 NGVLLTGGWA-KKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDVVQK 190 (203)
Q Consensus 144 DGVLLTGG~D-VdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~~~~ 190 (203)
|.+++-||.. -+..- .....=.+.|++...+|..+.+-+|||....
T Consensus 1 d~IvVLG~~~~~~~~~-~~~~~R~~~a~~l~~~~~~~~ii~sGg~~~~ 47 (150)
T cd06259 1 DAIVVLGGGVNGDGPS-PILAERLDAAAELYRAGPAPKLIVSGGQGPG 47 (150)
T ss_pred CEEEEeCCccCCCCCC-hHHHHHHHHHHHHHHhCCCCEEEEcCCCCCC
Confidence 4556666543 11111 4444555667777777777777778887665
No 244
>TIGR03432 yjhG_yagF probable dehydratase, YjhG/YagF family. This homolog of dihydroxy-acid dehydratases has an odd, sparse distribution. Members are found in two Acidobacteria, two Planctomycetes, Bacillus clausii KSM-K16, and (in two copies each) in strains K12-MG1655 and W3110 of Escherichia coli. The local context is not well conserved, but a few members are adjacent to homologs of the gluconate:H+ symporter (see TIGR00791).
Probab=42.95 E-value=1.2e+02 Score=31.00 Aligned_cols=74 Identities=15% Similarity=0.107 Sum_probs=41.8
Q ss_pred CCCCEEEEcCCCCC--CCCCC-----CCCCC-CchhhhHHHHHHHHHCCCeEEEeecCC-----------------CHHH
Q 028817 81 NNRPVIGILSHPGD--GASGR-----LNNSK-NASYIAASYVKFVESAGARVIPLIYNE-----------------PEEI 135 (203)
Q Consensus 81 ~~rPVIGIta~~~~--~~~~~-----~~~~~-~~syI~~sYVkaVe~AGA~PV~LP~~~-----------------~~e~ 135 (203)
..||.|||.....+ ..... ...++ ...-+.+.--+.|+++|+.|+-+.... +.+.
T Consensus 53 l~kP~I~I~ns~~~~~~~~~~~~~l~~~pgh~hl~~l~~~vk~gi~~aGg~P~ef~ti~vcDGia~G~~GM~ySL~sRel 132 (640)
T TIGR03432 53 LLGKEFLILSTHGGLRAADGTPIALGYHTGHWEVGLLMKAAAEEIKRDGAVPFAGFVSDPCDGRTQGTTGMFDSLPYRND 132 (640)
T ss_pred hCCCEEEEEeCCcccccccccccccCcCCCcccHHHHHHHHHHHHHHcCceeEEeCCCCccCccccCCCcceechhhHHH
Confidence 46999999877652 00000 01111 122233444446899999999887531 2333
Q ss_pred H----HHHHH--h-cCEEEeCCCCCC
Q 028817 136 L----FEKLK--L-VNGVLLTGGWAK 154 (203)
Q Consensus 136 l----~~~Ld--~-VDGVLLTGG~DV 154 (203)
+ +.++. . +||+++.||=|+
T Consensus 133 IA~siE~~v~ah~~~DgvV~i~~CDK 158 (640)
T TIGR03432 133 AAMVMRRLIRSLPTRKGVIGIATCDK 158 (640)
T ss_pred HHHHHHHHHhccCcCCeEEEeCcCCC
Confidence 3 23322 2 599999999873
No 245
>KOG1367 consensus 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=42.89 E-value=29 Score=32.96 Aligned_cols=74 Identities=18% Similarity=0.170 Sum_probs=51.6
Q ss_pred HHCCCeEEEeecCC-----CHHHHHHHHHhcCEEEeCCCCC-----------CCCcChHH-----HHHHHHHHHHHHhCC
Q 028817 118 ESAGARVIPLIYNE-----PEEILFEKLKLVNGVLLTGGWA-----------KKGLYFQI-----VEKIFKHEAIYERKK 176 (203)
Q Consensus 118 e~AGA~PV~LP~~~-----~~e~l~~~Ld~VDGVLLTGG~D-----------VdP~yY~~-----~~~I~~~AL~~n~~g 176 (203)
...-.+|+.-.... -...++.+|+.+|-+++.||-. |--..|++ +++|+++|.+.+-+=
T Consensus 199 lenp~rPFlaIlGGaKVadKIqlI~nLldkv~~liigGGMaftFlKvl~~~eiG~Sl~de~g~e~v~~l~~kak~~~v~i 278 (416)
T KOG1367|consen 199 LENPVRPFLAILGGAKVADKIQLIENLLDKVNELIIGGGMAFTFLKVLNGMEIGKSLFDEEGAEIVKDLMEKAKAKGVRI 278 (416)
T ss_pred HcCCCcchhhhhcCchhhhHHHHHHHHHhhcceEEEcCceeehHHHHhCCcchhhhhhhhhhHHHHHHHHHHHHHcCcEE
Confidence 33456665444321 2357889999999999999953 45566654 678888887766444
Q ss_pred CCcceEeeCCccccc
Q 028817 177 QSLVHGITGDVVQKD 191 (203)
Q Consensus 177 ~~PV~Gic~~~~~~~ 191 (203)
-.||=-+|++.+-.|
T Consensus 279 ~lPvDfv~adkf~~d 293 (416)
T KOG1367|consen 279 LLPVDFVIADKFAED 293 (416)
T ss_pred EeeeeeeeeccccCc
Confidence 449999999988887
No 246
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=42.89 E-value=36 Score=30.67 Aligned_cols=45 Identities=16% Similarity=0.174 Sum_probs=27.4
Q ss_pred HhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 141 KLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 141 d~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
+..|.|+||||.-- ..+..+-..+-+.++++ ++..-+|..||-|.
T Consensus 66 ~~yDviilPGG~~g-~e~L~~~~~v~~lvK~q-~~~gkLIaaICaap 110 (247)
T KOG2764|consen 66 SKYDVIILPGGLPG-AETLSECEKVVDLVKEQ-AESGKLIAAICAAP 110 (247)
T ss_pred ccccEEEecCCchh-hhhhhhcHHHHHHHHHH-HhcCCeEEEeecch
Confidence 88999999999431 12222223333333343 34455999999876
No 247
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=42.86 E-value=72 Score=28.82 Aligned_cols=33 Identities=9% Similarity=-0.052 Sum_probs=22.7
Q ss_pred CCCCcChHH-----HHHHHHHHHHHHhCC-CCcceEeeCCcc
Q 028817 153 AKKGLYFQI-----VEKIFKHEAIYERKK-QSLVHGITGDVV 188 (203)
Q Consensus 153 DVdP~yY~~-----~~~I~~~AL~~n~~g-~~PV~Gic~~~~ 188 (203)
-+.|..|++ .++|++.+.+ .+ +.||+-||||+-
T Consensus 212 ~lsp~~f~ef~~P~~k~i~~~i~~---~~~~~~ilh~cg~~~ 250 (346)
T PRK00115 212 ALSPADYREFVLPYMKRIVAELKR---EHPDVPVILFGKGAG 250 (346)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHH---hCCCCCEEEEcCCcH
Confidence 378999986 3455554433 34 569999999974
No 248
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=42.70 E-value=1.2e+02 Score=24.83 Aligned_cols=43 Identities=16% Similarity=0.054 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHCCCeEEEeecCCCHHHH----HHHHH-hcCEEEeCCC
Q 028817 109 IAASYVKFVESAGARVIPLIYNEPEEIL----FEKLK-LVNGVLLTGG 151 (203)
Q Consensus 109 I~~sYVkaVe~AGA~PV~LP~~~~~e~l----~~~Ld-~VDGVLLTGG 151 (203)
+.+...+.+++.|-.+++.....+.+.. +.+++ .+||+++.+.
T Consensus 17 ~~~gi~~~~~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (265)
T cd06290 17 ILKGMERGLNGSGYSPIIATGHWNQSRELEALELLKSRRVDALILLGG 64 (265)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 3344445667788888777665554322 33333 4899998764
No 249
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=41.15 E-value=70 Score=27.77 Aligned_cols=42 Identities=19% Similarity=0.263 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHCCCeEEEeecCCCHHHHHHHH-----HhcCEEEeCCC
Q 028817 109 IAASYVKFVESAGARVIPLIYNEPEEILFEKL-----KLVNGVLLTGG 151 (203)
Q Consensus 109 I~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~L-----d~VDGVLLTGG 151 (203)
+.+.--+.+++.|-.++++....+.+.- +++ .+||||++.+-
T Consensus 19 ii~gIe~~a~~~Gy~l~l~~t~~~~~~e-~~i~~l~~~~vDGiI~~s~ 65 (279)
T PF00532_consen 19 IIRGIEQEAREHGYQLLLCNTGDDEEKE-EYIELLLQRRVDGIILASS 65 (279)
T ss_dssp HHHHHHHHHHHTTCEEEEEEETTTHHHH-HHHHHHHHTTSSEEEEESS
T ss_pred HHHHHHHHHHHcCCEEEEecCCCchHHH-HHHHHHHhcCCCEEEEecc
Confidence 4444445667789988888876555433 555 46999999954
No 250
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=41.02 E-value=1.8e+02 Score=24.51 Aligned_cols=60 Identities=17% Similarity=0.016 Sum_probs=34.1
Q ss_pred CEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHH-----HhcCEEEeCCC
Q 028817 84 PVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKL-----KLVNGVLLTGG 151 (203)
Q Consensus 84 PVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~L-----d~VDGVLLTGG 151 (203)
.+||+....... ..+..+...-.+++++.|-..+......+.+.-.+++ ..+|||++.+.
T Consensus 36 ~~ig~v~~~~~~--------~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~ 100 (309)
T PRK11041 36 RTILVIVPDICD--------PFFSEIIRGIEVTAAEHGYLVLIGDCAHQNQQEKTFVNLIITKQIDGMLLLGS 100 (309)
T ss_pred cEEEEEeCCCcC--------ccHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecC
Confidence 588877543211 1223344555556777888877766544333222222 35899999864
No 251
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=40.84 E-value=1.2e+02 Score=25.55 Aligned_cols=43 Identities=16% Similarity=0.082 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHCCCeEEEeecCCCHHHHHHHH-----HhcCEEEeCCC
Q 028817 109 IAASYVKFVESAGARVIPLIYNEPEEILFEKL-----KLVNGVLLTGG 151 (203)
Q Consensus 109 I~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~L-----d~VDGVLLTGG 151 (203)
+.....+.+++.|-.+++.....+.+...+++ ..+||+++.+.
T Consensus 18 ~~~gi~~~a~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~vdgiil~~~ 65 (280)
T cd06315 18 VGEGVREAAKAIGWNLRILDGRGSEAGQAAALNQAIALKPDGIVLGGV 65 (280)
T ss_pred HHHHHHHHHHHcCcEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 44555566777787777665543443222233 47899999863
No 252
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=40.40 E-value=1.4e+02 Score=24.48 Aligned_cols=43 Identities=9% Similarity=0.131 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHCCCeEEEeecCCCHHHHHHHH-----HhcCEEEeCCC
Q 028817 109 IAASYVKFVESAGARVIPLIYNEPEEILFEKL-----KLVNGVLLTGG 151 (203)
Q Consensus 109 I~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~L-----d~VDGVLLTGG 151 (203)
+.....+.+++.|-..++.....+.+.-.+++ ..+|||++.+-
T Consensus 17 ~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (265)
T cd06285 17 MYEGIEEAAAERGYSTFVANTGDNPDAQRRAIEMLLDRRVDGLILGDA 64 (265)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 34454556777888877666544443333333 36799998653
No 253
>TIGR01196 edd 6-phosphogluconate dehydratase. A close homolog, designated MocB (mannityl opine catabolism), is found in a mannopine catabolism region of a plasmid of Agrobacterium tumefaciens. However, it is not essential for mannopine catabolism, branches within the cluster of 6-phosphogluconate dehydratases (with a short branch length) in a tree rooted by the presence of other dehydyatases. It may represent an authentic 6-phosphogluconate dehydratase, redundant with the chromosomal copy shown to exist in plasmid-cured strains. This model includes mocB above the trusted cutoff, although the designation is somewhat tenuous.
Probab=40.37 E-value=2.4e+02 Score=28.63 Aligned_cols=95 Identities=12% Similarity=-0.014 Sum_probs=55.6
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHH-HHHHCCCeEEEe-ecC-----------------CCHHHHHHH--
Q 028817 81 NNRPVIGILSHPGDGASGRLNNSKNASYIAASYVK-FVESAGARVIPL-IYN-----------------EPEEILFEK-- 139 (203)
Q Consensus 81 ~~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVk-aVe~AGA~PV~L-P~~-----------------~~~e~l~~~-- 139 (203)
..||+|||.....+..+ .+....-....|| .|.++|+.|... ... .+.+.+..-
T Consensus 62 ~~kP~IgIvns~~d~~p-----~h~hl~~~~~~vk~~i~~aGg~~~~~Gg~~a~cDGit~G~~GM~~SL~SRdlIA~sie 136 (601)
T TIGR01196 62 MKRPNLAIITAYNDMLS-----AHQPFKNYPDLIKKALQEANAVAQVAGGVPAMCDGVTQGYDGMELSLFSRDVIAMSTA 136 (601)
T ss_pred cCCCEEEEEeccccCcc-----ccccHHHHHHHHHHHHHHCCCEeEEeCCcCccCCCccCCCcccchhhhcHHHHHHHHH
Confidence 46999999888655321 1111112233334 567789999888 211 123322221
Q ss_pred ----HHhcCEEEeCCCCC-CCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCcccc
Q 028817 140 ----LKLVNGVLLTGGWA-KKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDVVQK 190 (203)
Q Consensus 140 ----Ld~VDGVLLTGG~D-VdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~~~~ 190 (203)
-+.+||+++-||=| +-|.. .+-+-.-|+.|..-+.||...-
T Consensus 137 ~~l~~~~fDg~v~l~~CDKivPG~----------lMaA~r~g~lP~IfV~gGpM~~ 182 (601)
T TIGR01196 137 IGLSHNMFDGALFLGVCDKIVPGL----------LIGALSFGHLPAVFVPSGPMVS 182 (601)
T ss_pred HHhcCCCcceeEEeccCCCCcHHH----------HHHHHhcCCCCEEEEeCCCcCC
Confidence 24689999999988 45543 2233334567888888887643
No 254
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=40.18 E-value=1.2e+02 Score=25.24 Aligned_cols=45 Identities=11% Similarity=-0.006 Sum_probs=28.1
Q ss_pred hhhhHHHHHHHHHCCCeEEEeecCCCHH---HHHHHH--HhcCEEEeCCC
Q 028817 107 SYIAASYVKFVESAGARVIPLIYNEPEE---ILFEKL--KLVNGVLLTGG 151 (203)
Q Consensus 107 syI~~sYVkaVe~AGA~PV~LP~~~~~e---~l~~~L--d~VDGVLLTGG 151 (203)
.-+.+...++.++.|-.+++.....+.+ .+.+.+ .++|||++.+.
T Consensus 15 ~~~~~~i~~~~~~~gy~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~ 64 (269)
T cd06297 15 RRLLEGIEGALLEQRYDLALFPLLSLARLKRYLESTTLAYLTDGLLLASY 64 (269)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecC
Confidence 3345566667777898888887653322 222222 25999999874
No 255
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=39.97 E-value=1.2e+02 Score=24.94 Aligned_cols=45 Identities=13% Similarity=-0.011 Sum_probs=27.1
Q ss_pred hhhhHHHHHHHHHCCCeEEEeecC--CCHHHHHHHH-----HhcCEEEeCCC
Q 028817 107 SYIAASYVKFVESAGARVIPLIYN--EPEEILFEKL-----KLVNGVLLTGG 151 (203)
Q Consensus 107 syI~~sYVkaVe~AGA~PV~LP~~--~~~e~l~~~L-----d~VDGVLLTGG 151 (203)
..+.....+++++.|-..+++... .+.+...+++ ..+|||++.+.
T Consensus 15 ~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~~~ 66 (273)
T cd06310 15 QAVKAGAEAAAKELGVKVTFQGPASETDVAGQVNLLENAIARGPDAILLAPT 66 (273)
T ss_pred HHHHHHHHHHHHHcCCEEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 344555556677788888877542 2333222332 36999999764
No 256
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=39.37 E-value=2.6e+02 Score=28.32 Aligned_cols=44 Identities=20% Similarity=0.160 Sum_probs=29.5
Q ss_pred HHH-HHHHCCCeEEEeecC-CCHHHHHHH----HH-hcCEEEeCCCCCCCC
Q 028817 113 YVK-FVESAGARVIPLIYN-EPEEILFEK----LK-LVNGVLLTGGWAKKG 156 (203)
Q Consensus 113 YVk-aVe~AGA~PV~LP~~-~~~e~l~~~----Ld-~VDGVLLTGG~DVdP 156 (203)
++. .+++.|+.++.+... ++.+.+.+. ++ .+|=||.|||..+..
T Consensus 213 ~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DlvItTGGts~G~ 263 (659)
T PLN02699 213 MLLAAAIQQQCKVVDLGIARDDEEELERILDEAISSGVDILLTSGGVSMGD 263 (659)
T ss_pred HHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhcCCCCEEEECCCCCCCC
Confidence 444 478899988766543 345555554 33 579999999987733
No 257
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=38.88 E-value=77 Score=25.47 Aligned_cols=45 Identities=16% Similarity=0.089 Sum_probs=27.1
Q ss_pred cCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCccc
Q 028817 143 VNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDVVQ 189 (203)
Q Consensus 143 VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~~~ 189 (203)
+.||.|+||...-..-.+....+++.+.+. -+..=+|-.+|-+..
T Consensus 64 ~~gVt~sGGEPllq~~~~~l~~ll~~~k~~--~~~~~~~~~tG~~~~ 108 (154)
T TIGR02491 64 IDGLTLSGGDPLYPRNVEELIELVKKIKAE--FPEKDIWLWTGYTWE 108 (154)
T ss_pred cCeEEEeChhhCCCCCHHHHHHHHHHHHHh--CCCCCEEEeeCccHH
Confidence 579999999765443345666666665442 122346667776643
No 258
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=38.78 E-value=1e+02 Score=26.61 Aligned_cols=48 Identities=23% Similarity=0.353 Sum_probs=31.7
Q ss_pred hHHHHHHHHHCCCeE-EEeecCCCHHHHHHHH--HhcCEEEeCCCCCCCCcChH
Q 028817 110 AASYVKFVESAGARV-IPLIYNEPEEILFEKL--KLVNGVLLTGGWAKKGLYFQ 160 (203)
Q Consensus 110 ~~sYVkaVe~AGA~P-V~LP~~~~~e~l~~~L--d~VDGVLLTGG~DVdP~yY~ 160 (203)
....++++.+.|.++ |.|....+.+.+++++ +.+|.|++ -.++|.+-+
T Consensus 103 ~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~Vl~---m~v~pG~~g 153 (228)
T PTZ00170 103 PKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMVLV---MTVEPGFGG 153 (228)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhHHh---hhcccCCCC
Confidence 355677788888665 4444445788888898 88998875 334554443
No 259
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=38.68 E-value=2.2e+02 Score=25.34 Aligned_cols=40 Identities=13% Similarity=0.008 Sum_probs=23.8
Q ss_pred hHHHHHHHHHCCCeEEEeecCCCHHHHHHHHH-----hcCEEEeC
Q 028817 110 AASYVKFVESAGARVIPLIYNEPEEILFEKLK-----LVNGVLLT 149 (203)
Q Consensus 110 ~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld-----~VDGVLLT 149 (203)
....++++.++-.+||.+-...+.+++.++.+ .+|||.++
T Consensus 156 ~~~iv~~v~~~~~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~ 200 (299)
T cd02940 156 VEEICRWVREAVKIPVIAKLTPNITDIREIARAAKEGGADGVSAI 200 (299)
T ss_pred HHHHHHHHHHhcCCCeEEECCCCchhHHHHHHHHHHcCCCEEEEe
Confidence 46677777765557877765443333333322 47999864
No 260
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=38.44 E-value=1.8e+02 Score=23.61 Aligned_cols=44 Identities=18% Similarity=0.303 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHCCCeEEEeecCCCH---HHHHHHHH--hcCEEEeCCCC
Q 028817 109 IAASYVKFVESAGARVIPLIYNEPE---EILFEKLK--LVNGVLLTGGW 152 (203)
Q Consensus 109 I~~sYVkaVe~AGA~PV~LP~~~~~---e~l~~~Ld--~VDGVLLTGG~ 152 (203)
+.+.--+.+++.|-.+++....... +.+.+++. .+||+++.+..
T Consensus 21 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~ 69 (268)
T cd06271 21 FLSGLSEALAEHGYDLVLLPVDPDEDPLEVYRRLVESGLVDGVIISRTR 69 (268)
T ss_pred HHHHHHHHHHHCCceEEEecCCCcHHHHHHHHHHHHcCCCCEEEEecCC
Confidence 3344445566678887777654332 23455543 59999998753
No 261
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=38.27 E-value=1.2e+02 Score=24.65 Aligned_cols=41 Identities=10% Similarity=0.097 Sum_probs=23.4
Q ss_pred hHHHHHHHHHCCCeEEEeecCCCHHHHHHHHH-----hcCEEEeCC
Q 028817 110 AASYVKFVESAGARVIPLIYNEPEEILFEKLK-----LVNGVLLTG 150 (203)
Q Consensus 110 ~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld-----~VDGVLLTG 150 (203)
.+.--+.+++.|-..+++....+.+...+.++ ++|||++.+
T Consensus 18 ~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dgii~~~ 63 (268)
T cd06323 18 KDGAQKEAKELGYELTVLDAQNDAAKQLNDIEDLITRGVDAIIINP 63 (268)
T ss_pred HHHHHHHHHHcCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 34444456667877777665444433323332 689988853
No 262
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=38.14 E-value=1.8e+02 Score=24.85 Aligned_cols=61 Identities=18% Similarity=0.209 Sum_probs=33.0
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHH-----HhcCEEEeCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKL-----KLVNGVLLTGG 151 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~L-----d~VDGVLLTGG 151 (203)
.-+||+....... ..+..+....-+.+++.|-..++.....+.+.-.+++ ..+|||++.|.
T Consensus 59 ~~~Igvv~~~~~~--------~f~~~l~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 124 (329)
T TIGR01481 59 TTTVGVIIPDISN--------IYYAELARGIEDIATMYKYNIILSNSDEDPEKEVQVLNTLLSKQVDGIIFMGG 124 (329)
T ss_pred CCEEEEEeCCCCc--------hhHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 3588987643211 1122233333345666788887776544433222222 25899999763
No 263
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=37.65 E-value=76 Score=28.11 Aligned_cols=40 Identities=10% Similarity=0.081 Sum_probs=32.5
Q ss_pred hhhhHHHHHHHHHC-CCeEEEeecCCCHHHHHHHHHh-cCEEE
Q 028817 107 SYIAASYVKFVESA-GARVIPLIYNEPEEILFEKLKL-VNGVL 147 (203)
Q Consensus 107 syI~~sYVkaVe~A-GA~PV~LP~~~~~e~l~~~Ld~-VDGVL 147 (203)
..+...+|+.+.++ |-.+.+.-.+ +.++.++++++ ||||+
T Consensus 215 ~l~t~~~V~~~h~~~gl~V~~WTVN-~~~~~~~l~~~GVDgIi 256 (263)
T cd08580 215 TLWTPAAVDCFRRNSKVKIVLFGIN-TADDYRLAKCLGADAVM 256 (263)
T ss_pred ccCCHHHHHHHHhcCCcEEEEEEeC-CHHHHHHHHHcCCCEEE
Confidence 45678999999999 9988888776 56677787776 99987
No 264
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=37.51 E-value=2.2e+02 Score=23.02 Aligned_cols=58 Identities=29% Similarity=0.086 Sum_probs=33.7
Q ss_pred HHHHHHHHHCCCeEEE-eecCCCHHHHHHHHH-hcCEEEe-CCC--CCC-CCcChHHHHHHHHH
Q 028817 111 ASYVKFVESAGARVIP-LIYNEPEEILFEKLK-LVNGVLL-TGG--WAK-KGLYFQIVEKIFKH 168 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~-LP~~~~~e~l~~~Ld-~VDGVLL-TGG--~DV-dP~yY~~~~~I~~~ 168 (203)
...++.+++.|..+++ ++...+.++..+.++ .+|-|++ +|. ... .+...+..+.+.+.
T Consensus 93 ~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~ 156 (202)
T cd04726 93 KKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKL 156 (202)
T ss_pred HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcCcccccccCCCCCHHHHHHHHhh
Confidence 4567777888887765 244345555545666 8999877 442 112 24445555555543
No 265
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=37.46 E-value=45 Score=27.04 Aligned_cols=43 Identities=23% Similarity=0.264 Sum_probs=30.0
Q ss_pred hHHHHHHHHHCCCeEEEeecCCCH-------HHHHHHHHhcCEEEeCCCC
Q 028817 110 AASYVKFVESAGARVIPLIYNEPE-------EILFEKLKLVNGVLLTGGW 152 (203)
Q Consensus 110 ~~sYVkaVe~AGA~PV~LP~~~~~-------e~l~~~Ld~VDGVLLTGG~ 152 (203)
...+.+.+++.|+.++.+|..... ......+...|+|+||=..
T Consensus 10 ~~~l~~~L~~~G~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iiftS~~ 59 (239)
T cd06578 10 ADELAALLEALGAEVLELPLIEIEPLDDAELDAALADLDEYDWLIFTSPN 59 (239)
T ss_pred hHHHHHHHHHcCCcEEEeeeEEEecCChHHHHHHHHhcCCCCEEEEECHH
Confidence 466778899999999999975421 2222334468999999764
No 266
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=37.33 E-value=1.3e+02 Score=24.67 Aligned_cols=43 Identities=21% Similarity=0.216 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHCCCeEEEeecCCCHHHHHHHH-----HhcCEEEeCCC
Q 028817 109 IAASYVKFVESAGARVIPLIYNEPEEILFEKL-----KLVNGVLLTGG 151 (203)
Q Consensus 109 I~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~L-----d~VDGVLLTGG 151 (203)
+.+...++.++.|-..++.....+.+...+.+ ..+||+++.+.
T Consensus 18 ~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 65 (275)
T cd06317 18 YNKAFQAAAEEDGVEVIVLDANGDVARQAAQVEDLIAQKVDGIILWPT 65 (275)
T ss_pred HHHHHHHHHHhcCCEEEEEcCCcCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 33444445666777776665433433332333 36888888654
No 267
>PF13941 MutL: MutL protein
Probab=37.25 E-value=1.1e+02 Score=29.75 Aligned_cols=56 Identities=29% Similarity=0.252 Sum_probs=37.2
Q ss_pred HHHHHCCCeEEEeecCC-CHHHHHHHHH-hcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhC
Q 028817 115 KFVESAGARVIPLIYNE-PEEILFEKLK-LVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERK 175 (203)
Q Consensus 115 kaVe~AGA~PV~LP~~~-~~e~l~~~Ld-~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~ 175 (203)
++...|||+++-+-... ..++++++.+ +-|-|||+||-| ++..+.+.+.|......
T Consensus 95 ~AAlgAGA~V~~v~s~~l~~~~l~~i~~~~PDiILLaGGtD-----gG~~~~il~nA~~La~~ 152 (457)
T PF13941_consen 95 RAALGAGARVLQVYSYELTEEDLEEIREIRPDIILLAGGTD-----GGNKEVILHNAEMLAEA 152 (457)
T ss_pred HHHhcCCcEEEEEeccCCCHHHHHHHhccCCCEEEEeCCcc-----CCchHHHHHHHHHHHhC
Confidence 45677999998776643 5667766543 579999999988 34444555555444433
No 268
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=37.13 E-value=89 Score=27.89 Aligned_cols=34 Identities=12% Similarity=-0.071 Sum_probs=22.7
Q ss_pred CCCCcChHH-----HHHHHHHHHHHHhCCCCcceEeeCCcc
Q 028817 153 AKKGLYFQI-----VEKIFKHEAIYERKKQSLVHGITGDVV 188 (203)
Q Consensus 153 DVdP~yY~~-----~~~I~~~AL~~n~~g~~PV~Gic~~~~ 188 (203)
-+.|..|++ .++|++.+.+. .+..+|+-+|||+-
T Consensus 203 ~lsp~~f~ef~~P~~k~i~~~i~~~--~~~~~ilh~cg~~~ 241 (335)
T cd00717 203 ALSPEDFEEFVLPYLKRIIEEVKKR--LPGVPVILFAKGAG 241 (335)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHh--CCCCCEEEEcCCCH
Confidence 388999986 34555554443 11469999999974
No 269
>PF00920 ILVD_EDD: Dehydratase family; InterPro: IPR000581 Two dehydratases, dihydroxy-acid dehydratase (4.2.1.9 from EC) (gene ilvD or ILV3) and 6-phosphogluconate dehydratase (4.2.1.12 from EC) (gene edd) have been shown to be evolutionary related []. Dihydroxy-acid dehydratase catalyses the fourth step in the biosynthesis of isoleucine and valine, the dehydratation of 2,3-dihydroxy-isovaleic acid into alpha-ketoisovaleric acid. 6-Phosphogluconate dehydratase catalyses the first step in the Entner-Doudoroff pathway, the dehydratation of 6-phospho-D-gluconate into 6-phospho-2-dehydro-3-deoxy-D-gluconate. Another protein containing this signature is the Escherichia coli hypothetical protein yjhG. The N-terminal part of the proteins contains a cysteine that could be involved in the binding of a 2Fe-2S iron-sulphur cluster [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GP4_B.
Probab=37.13 E-value=9 Score=37.77 Aligned_cols=68 Identities=21% Similarity=0.301 Sum_probs=15.9
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCC-----------------CHHH----HHHHH-
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNE-----------------PEEI----LFEKL- 140 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~-----------------~~e~----l~~~L- 140 (203)
||+|||.....+..+. .....-+.+.--+.|++||+.|+-++... +.+. ++..+
T Consensus 1 KP~IgI~ns~~e~~Pc----~~hl~~la~~vk~gi~~aGG~p~ef~ti~v~Dgi~~g~~GM~ysL~sRelIAd~iE~~~~ 76 (521)
T PF00920_consen 1 KPIIGIVNSWSEINPC----HMHLRELAEAVKEGIRAAGGVPFEFNTIAVCDGIAMGTEGMRYSLPSRELIADSIEEMVR 76 (521)
T ss_dssp ----------------------------------SS---EEEE---B---------SSSGGGGHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEeccccCCcc----chhHHHHHHHHHHHHHHcCCeEEEECCCcccchhcCCccccchhhhhHHHHHHHHHHHHh
Confidence 7999998776543221 11111233333335788999999887631 1222 22222
Q ss_pred -HhcCEEEeCCCCCC
Q 028817 141 -KLVNGVLLTGGWAK 154 (203)
Q Consensus 141 -d~VDGVLLTGG~DV 154 (203)
..+||+++.||=|+
T Consensus 77 a~~~Dg~V~l~gCDK 91 (521)
T PF00920_consen 77 AHPFDGMVLLGGCDK 91 (521)
T ss_dssp T---SEEEEE--STT
T ss_pred CCCcceEEEeccCCC
Confidence 36899999999873
No 270
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=37.10 E-value=1.3e+02 Score=24.93 Aligned_cols=41 Identities=10% Similarity=0.044 Sum_probs=18.1
Q ss_pred hHHHHHHHHHCCCeEEEeecCCCHHHHHHHHH-----hcCEEEeCC
Q 028817 110 AASYVKFVESAGARVIPLIYNEPEEILFEKLK-----LVNGVLLTG 150 (203)
Q Consensus 110 ~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld-----~VDGVLLTG 150 (203)
....-++.++.|-.+++.....+.+.-.++++ .+|||++.+
T Consensus 18 ~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~ 63 (282)
T cd06318 18 TEAAKAHAKALGYELISTDAQGDLTKQIADVEDLLTRGVNVLIINP 63 (282)
T ss_pred HHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 33334445555655554443323222222222 466666643
No 271
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=36.92 E-value=2.2e+02 Score=24.72 Aligned_cols=61 Identities=8% Similarity=-0.008 Sum_probs=32.9
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHH----HHHHH-HhcCEEEeCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEI----LFEKL-KLVNGVLLTGG 151 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~----l~~~L-d~VDGVLLTGG 151 (203)
..+||+....... ..+..+.+..-+.+++.|-..++.....+.+. ++.++ ..+||+++.+.
T Consensus 59 ~~~Igvi~~~~~~--------~f~~~l~~gi~~~~~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~ 124 (346)
T PRK10401 59 SDTIGVVVMDVSD--------AFFGALVKAVDLVAQQHQKYVLIGNSYHEAEKERHAIEVLIRQRCNALIVHSK 124 (346)
T ss_pred CCEEEEEeCCCCC--------ccHHHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhcCCCEEEEeCC
Confidence 3588987543211 12233444444556777877766554433332 22222 35899999864
No 272
>PF13297 Telomere_Sde2_2: Telomere stability C-terminal
Probab=36.81 E-value=10 Score=27.26 Aligned_cols=8 Identities=25% Similarity=0.410 Sum_probs=6.7
Q ss_pred eeCCcccc
Q 028817 183 ITGDVVQK 190 (203)
Q Consensus 183 ic~~~~~~ 190 (203)
-||||+|+
T Consensus 30 KcGGTl~E 37 (60)
T PF13297_consen 30 KCGGTLQE 37 (60)
T ss_pred ccCCCHHH
Confidence 49999986
No 273
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=36.69 E-value=1.4e+02 Score=25.32 Aligned_cols=59 Identities=24% Similarity=0.303 Sum_probs=32.1
Q ss_pred hHHHHHHHHHCCCeE---EEeecCCCHHHH----HHHHHh-cCEEEeCCCCCCCC--cChHHHHHHHHHHH
Q 028817 110 AASYVKFVESAGARV---IPLIYNEPEEIL----FEKLKL-VNGVLLTGGWAKKG--LYFQIVEKIFKHEA 170 (203)
Q Consensus 110 ~~sYVkaVe~AGA~P---V~LP~~~~~e~l----~~~Ld~-VDGVLLTGG~DVdP--~yY~~~~~I~~~AL 170 (203)
..--+++++.+|-.+ .++| + +.+.+ .+.+++ +|.||.+||--+.| .-+++.+.+|+|-+
T Consensus 29 G~~l~~~L~~ag~~~~~~~iV~-D-~~~~I~~~l~~~~~~~~DvvlttGGTG~t~RDvTpEA~~~~~dKei 97 (169)
T COG0521 29 GPLLVELLEEAGHNVAAYTIVP-D-DKEQIRATLIALIDEDVDVVLTTGGTGITPRDVTPEATRPLFDKEI 97 (169)
T ss_pred hhHHHHHHHHcCCccceEEEeC-C-CHHHHHHHHHHHhcCCCCEEEEcCCccCCCCcCCHHHHHHHHhccC
Confidence 344456788888665 4444 2 33323 333333 89999999953322 23345555555433
No 274
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=36.08 E-value=2e+02 Score=24.82 Aligned_cols=60 Identities=18% Similarity=0.232 Sum_probs=33.2
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHH-----HhcCEEEeCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKL-----KLVNGVLLTG 150 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~L-----d~VDGVLLTG 150 (203)
..+||+....... ..+.-+.+..-+..++.|-..++.....+.+.-.+.+ ..+|||++.+
T Consensus 63 ~~~Igvi~~~~~~--------~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiI~~~ 127 (331)
T PRK14987 63 SRAIGVLLPSLTN--------QVFAEVLRGIESVTDAHGYQTMLAHYGYKPEMEQERLESMLSWNIDGLILTE 127 (331)
T ss_pred CCEEEEEeCCCcc--------hhHHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3588987543211 1222344444456677788777766543433222222 3789999975
No 275
>cd00318 Phosphoglycerate_kinase Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate. This reaction represents the first of the two substrate-level phosphorylation events in the glycolytic pathway. Substrate-level phosphorylation is defined as production of ATP by a process, which is catalyzed by water-soluble enzymes in the cytosol; not involving membranes and ion gradients.
Probab=35.89 E-value=96 Score=29.65 Aligned_cols=68 Identities=13% Similarity=0.120 Sum_probs=45.8
Q ss_pred CCCeEEEeecCC-----CHHHHHHHHHhcCEEEeCCC----------CCC-----CCcChHHHHHHHHHHHHHHhCCCCc
Q 028817 120 AGARVIPLIYNE-----PEEILFEKLKLVNGVLLTGG----------WAK-----KGLYFQIVEKIFKHEAIYERKKQSL 179 (203)
Q Consensus 120 AGA~PV~LP~~~-----~~e~l~~~Ld~VDGVLLTGG----------~DV-----dP~yY~~~~~I~~~AL~~n~~g~~P 179 (203)
..-+|++.-... ....++.+++++|.|++.|| -+| ++...+.++.|++++.+++.+=-.|
T Consensus 186 ~p~rP~vaIlGGaKvsdKi~vl~~Ll~kvD~liigG~ma~tFL~A~G~~iG~sl~e~~~i~~a~~il~~a~~~~~~I~lP 265 (397)
T cd00318 186 NPERPFVAILGGAKVSDKIQVIENLLDKVDYLIIGGGMAFTFLKAQGMDIGKSLFEEDGIELAKSLLEKAKAKGVKIVLP 265 (397)
T ss_pred CCCCCeEEEEcCccHHhHHHHHHHHHHhcCEEEECcHHHHHHHHHcCCCcCccccChhhHHHHHHHHHHhHhcCCEEECC
Confidence 456776655432 23578889999999999997 234 4445566788888876655443338
Q ss_pred ceEeeCCc
Q 028817 180 VHGITGDV 187 (203)
Q Consensus 180 V~Gic~~~ 187 (203)
+=-+|...
T Consensus 266 vD~~v~~~ 273 (397)
T cd00318 266 VDVVVADK 273 (397)
T ss_pred ceEEEeec
Confidence 88888753
No 276
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=35.87 E-value=38 Score=31.89 Aligned_cols=16 Identities=13% Similarity=0.042 Sum_probs=13.7
Q ss_pred HHHhcCEEEeCCCCCC
Q 028817 139 KLKLVNGVLLTGGWAK 154 (203)
Q Consensus 139 ~Ld~VDGVLLTGG~DV 154 (203)
....++-|+||||+|.
T Consensus 46 w~~~~~LlV~PGG~d~ 61 (367)
T PF09825_consen 46 WQSKCALLVMPGGADL 61 (367)
T ss_pred cccCCcEEEECCCcch
Confidence 4678999999999985
No 277
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=35.80 E-value=2.4e+02 Score=23.25 Aligned_cols=41 Identities=7% Similarity=0.174 Sum_probs=25.2
Q ss_pred HHHHHHHCCCeEEEeecCC-CHHHHHHHHHh-------cCEEEeCCCCC
Q 028817 113 YVKFVESAGARVIPLIYNE-PEEILFEKLKL-------VNGVLLTGGWA 153 (203)
Q Consensus 113 YVkaVe~AGA~PV~LP~~~-~~e~l~~~Ld~-------VDGVLLTGG~D 153 (203)
..+.++..|+.+..+..+. +.+.+++.++. +|+|+...|..
T Consensus 50 ~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~li~~ag~~ 98 (255)
T PRK07523 50 AAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIGPIDILVNNAGMQ 98 (255)
T ss_pred HHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 3344555566666665543 44555555554 79999988863
No 278
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=35.60 E-value=1.9e+02 Score=22.98 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHCCCeEEEeecCCCHH----HHHHHH-HhcCEEEeCCCC
Q 028817 109 IAASYVKFVESAGARVIPLIYNEPEE----ILFEKL-KLVNGVLLTGGW 152 (203)
Q Consensus 109 I~~sYVkaVe~AGA~PV~LP~~~~~e----~l~~~L-d~VDGVLLTGG~ 152 (203)
+.+..-++++..|-..+.+....+.+ .+++++ ..+||+++.+..
T Consensus 17 ~~~g~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~ 65 (264)
T cd01537 17 VLKGIEEAAKAAGYQVLLANSQNDAEKQLSALENLIARGVDGIIIAPSD 65 (264)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCC
Confidence 44444455666777776666554332 223333 268888887643
No 279
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=35.23 E-value=84 Score=24.03 Aligned_cols=48 Identities=19% Similarity=0.235 Sum_probs=32.7
Q ss_pred hHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcCh
Q 028817 110 AASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYF 159 (203)
Q Consensus 110 ~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY 159 (203)
.....+.+++ |- -|.+....+.+++.+.++.+|+++..++..++...+
T Consensus 8 ~~~~~~~l~~-~~-~v~~~~~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l 55 (133)
T PF00389_consen 8 PDEEIERLEE-GF-EVEFCDSPSEEELAERLKDADAIIVGSGTPLTAEVL 55 (133)
T ss_dssp SHHHHHHHHH-TS-EEEEESSSSHHHHHHHHTTESEEEESTTSTBSHHHH
T ss_pred CHHHHHHHHC-Cc-eEEEeCCCCHHHHHHHhCCCeEEEEcCCCCcCHHHH
Confidence 4455566777 65 444444668888999999999999877663444333
No 280
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=35.09 E-value=99 Score=25.94 Aligned_cols=36 Identities=19% Similarity=0.397 Sum_probs=28.9
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEE
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVL 147 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVL 147 (203)
..+++.+.++|..+.+.-.+ +.+..+.+.+.||||+
T Consensus 184 ~~~v~~~~~~G~~v~~WTvn-~~~~~~~l~~~vdgii 219 (226)
T cd08568 184 VELLRLLRKLGLKIVLWTVN-DPELVPKLKGLVDGVI 219 (226)
T ss_pred HHHHHHHHHCCCEEEEEcCC-CHHHHHHHHhhCCEEE
Confidence 67888888898887777654 5677888888899987
No 281
>PRK09054 phosphogluconate dehydratase; Validated
Probab=34.79 E-value=2.4e+02 Score=28.66 Aligned_cols=94 Identities=15% Similarity=0.019 Sum_probs=54.2
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHH-HHHHCCCeEEEe-ec--C---------------CCHHHHHH---
Q 028817 81 NNRPVIGILSHPGDGASGRLNNSKNASYIAASYVK-FVESAGARVIPL-IY--N---------------EPEEILFE--- 138 (203)
Q Consensus 81 ~~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVk-aVe~AGA~PV~L-P~--~---------------~~~e~l~~--- 138 (203)
..||+|||.+...+..+ .+...--....|| .++++|++|... .. . .+.+.+..
T Consensus 63 ~~kP~IgIvns~nd~~p-----~h~~l~~~~~~vk~~v~~aGg~~~~~Gg~pa~cDGit~G~~GM~~SL~SRdlIA~sie 137 (603)
T PRK09054 63 MTRPNIGIVTAYNDMLS-----AHQPYEHYPDIIKEAAREAGAVAQVAGGVPAMCDGVTQGQPGMELSLFSRDVIAMSTA 137 (603)
T ss_pred cCCCEEEEEeccccCcC-----ccccHHHHHHHHHHHHHHcCCccceeCCCCccCCCccCCCcchhhhhhhHHHHHHHHH
Confidence 46999999888655321 1111112233344 577899999887 21 0 12222222
Q ss_pred -H--HHhcCEEEeCCCCC-CCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCccc
Q 028817 139 -K--LKLVNGVLLTGGWA-KKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDVVQ 189 (203)
Q Consensus 139 -~--Ld~VDGVLLTGG~D-VdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~~~ 189 (203)
. -+.+||+++-||=| +-|... +-+-.-|+.|..-+.||...
T Consensus 138 ~~l~~~~fDg~v~lg~CDKivPG~l----------MaA~r~g~lP~ifV~gGpM~ 182 (603)
T PRK09054 138 VALSHNMFDAALLLGVCDKIVPGLL----------IGALSFGHLPAIFVPAGPMT 182 (603)
T ss_pred HHhhcCCcceEEEeccCCCCcHHHH----------HHHHhcCCCCEEEEeCCCcC
Confidence 1 24689999999988 455432 22233345688888888754
No 282
>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=34.74 E-value=81 Score=30.04 Aligned_cols=56 Identities=14% Similarity=0.227 Sum_probs=33.3
Q ss_pred eecCCCHHHHHHH---H--HhcCEEEeCCCC-C---------------------CCCcChHHHHHHHHHHHHHHhCCCCc
Q 028817 127 LIYNEPEEILFEK---L--KLVNGVLLTGGW-A---------------------KKGLYFQIVEKIFKHEAIYERKKQSL 179 (203)
Q Consensus 127 LP~~~~~e~l~~~---L--d~VDGVLLTGG~-D---------------------VdP~yY~~~~~I~~~AL~~n~~g~~P 179 (203)
|.++...++++++ + -.+||++.++-- + +.|.-.+.+|.+|++ -+|+.|
T Consensus 259 iapDL~~~el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~mY~l-----t~g~Ip 333 (398)
T KOG1436|consen 259 IAPDLSEKELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRAMYTL-----TRGKIP 333 (398)
T ss_pred eccchhHHHHHHHHHHHHHhCccceeecCceeecCccccccccccccCCCCCCccchhHHHHHHHHHHh-----ccCCCc
Confidence 3344444455544 4 456999987743 1 222223456777765 368889
Q ss_pred ceEeeCCcc
Q 028817 180 VHGITGDVV 188 (203)
Q Consensus 180 V~Gic~~~~ 188 (203)
|.| |||+-
T Consensus 334 iIG-~GGV~ 341 (398)
T KOG1436|consen 334 IIG-CGGVS 341 (398)
T ss_pred eEe-ecCcc
Confidence 999 77763
No 283
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=34.53 E-value=1.6e+02 Score=24.25 Aligned_cols=88 Identities=13% Similarity=0.089 Sum_probs=51.0
Q ss_pred CEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHH-HHHCCCeEEEe-----ecC-CC---------HHHHHHHHHhcCEEE
Q 028817 84 PVIGILSHPGDGASGRLNNSKNASYIAASYVKF-VESAGARVIPL-----IYN-EP---------EEILFEKLKLVNGVL 147 (203)
Q Consensus 84 PVIGIta~~~~~~~~~~~~~~~~syI~~sYVka-Ve~AGA~PV~L-----P~~-~~---------~e~l~~~Ld~VDGVL 147 (203)
.|++|.++.+.. .++-....|+.. ++..+..-+.+ |.. .+ ...+.+.+...|||+
T Consensus 2 kil~i~GS~r~~---------S~~~~la~~~~~~l~~~~~~~~~~~~~~lP~~~~d~~~~~~p~~v~~~~~~i~~aD~li 72 (184)
T COG0431 2 KILIISGSLRRG---------SFNRALAEAAAKLLPAGGEVEVEFDDLDLPLYNEDLEADGLPPAVQALREAIAAADGLI 72 (184)
T ss_pred eEEEEeccCccc---------chHHHHHHHHHHhhcccCceEEEecccccCCCCcchhhccCCHHHHHHHHHHHhCCEEE
Confidence 366777776542 233344555554 44445443333 221 11 236677889999999
Q ss_pred eCCCCCCCCcChHHHHHHHHHHHHHHhCC---CCcceEeeC
Q 028817 148 LTGGWAKKGLYFQIVEKIFKHEAIYERKK---QSLVHGITG 185 (203)
Q Consensus 148 LTGG~DVdP~yY~~~~~I~~~AL~~n~~g---~~PV~Gic~ 185 (203)
| +.|.|-+...-++|-++++=... +.||.-++.
T Consensus 73 ~-----~tPeYn~s~pg~lKnaiD~l~~~~~~~Kpv~~~~~ 108 (184)
T COG0431 73 I-----ATPEYNGSYPGALKNAIDWLSREALGGKPVLLLGT 108 (184)
T ss_pred E-----ECCccCCCCCHHHHHHHHhCCHhHhCCCcEEEEec
Confidence 9 56877777666677777644333 557554443
No 284
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=34.52 E-value=1.6e+02 Score=23.66 Aligned_cols=44 Identities=11% Similarity=0.114 Sum_probs=23.8
Q ss_pred hhhHHHHHHHHHCCCeEEEeecCCCHHH----HHHHHH-hcCEEEeCCC
Q 028817 108 YIAASYVKFVESAGARVIPLIYNEPEEI----LFEKLK-LVNGVLLTGG 151 (203)
Q Consensus 108 yI~~sYVkaVe~AGA~PV~LP~~~~~e~----l~~~Ld-~VDGVLLTGG 151 (203)
.+.+..-++.++.|-..++.....+.+. +++++. .+|||++.+.
T Consensus 16 ~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~ 64 (267)
T cd01536 16 AMNKGAEAAAKELGVELIVLDAQNDVSKQIQQIEDLIAQGVDGIIISPV 64 (267)
T ss_pred HHHHHHHHHHHhcCceEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3445545556667777766665433322 222222 5788877654
No 285
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=34.50 E-value=2.5e+02 Score=22.67 Aligned_cols=83 Identities=13% Similarity=0.018 Sum_probs=44.0
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHHHH---HHHHHhc-----C----EEEeCCCCCCC--------CcChHHHHHHHHHHH
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEEIL---FEKLKLV-----N----GVLLTGGWAKK--------GLYFQIVEKIFKHEA 170 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e~l---~~~Ld~V-----D----GVLLTGG~DVd--------P~yY~~~~~I~~~AL 170 (203)
...++.+++.|-..+.+ ..++.... .++++.+ + .|++..|+.+. ....+--....+..+
T Consensus 33 ~~a~~~l~~~G~~ivy~-TGRp~~~~~~t~~~l~~~~~~~~~lp~g~li~~~g~~~~~~~~e~i~~~~~~~K~~~l~~i~ 111 (157)
T smart00775 33 AKLYRDIQNNGYKILYL-TARPIGQADRTRSYLSQIKQDGHNLPHGPVLLSPDRLFAALHREVISKKPEVFKIACLRDIK 111 (157)
T ss_pred HHHHHHHHHcCCeEEEE-cCCcHHHHHHHHHHHHHhhhccccCCCceEEEcCCcchhhhhcccccCCHHHHHHHHHHHHH
Confidence 34456666677654444 44554433 4677663 1 45556665431 111010123333333
Q ss_pred HHHhCCCCcceEeeCCccccccccc
Q 028817 171 IYERKKQSLVHGITGDVVQKDYYTW 195 (203)
Q Consensus 171 ~~n~~g~~PV~Gic~~~~~~~~~~~ 195 (203)
+.....+.|++..+| .=|+|...|
T Consensus 112 ~~~~~~~~~f~~~~g-n~~~D~~~y 135 (157)
T smart00775 112 SLFPPQGNPFYAGFG-NRITDVISY 135 (157)
T ss_pred HhcCCCCCCEEEEeC-CCchhHHHH
Confidence 444445669988888 668887765
No 286
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=34.34 E-value=2.6e+02 Score=24.75 Aligned_cols=60 Identities=12% Similarity=-0.080 Sum_probs=31.4
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecC--CCHHHHHHHH-----HhcCEEEeCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYN--EPEEILFEKL-----KLVNGVLLTG 150 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~--~~~e~l~~~L-----d~VDGVLLTG 150 (203)
.-+||+....... ..+..+.+.--+++++.|-..++.... .+.+...+.+ ..+|||++.+
T Consensus 46 t~~Igvv~p~~~~--------~f~~~~~~gi~~aa~~~G~~l~i~~~~~~~~~~~q~~~i~~l~~~~vdgIIl~~ 112 (343)
T PRK10936 46 AWKLCALYPHLKD--------SYWLSVNYGMVEEAKRLGVDLKVLEAGGYYNLAKQQQQLEQCVAWGADAILLGA 112 (343)
T ss_pred CeEEEEEecCCCc--------hHHHHHHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHhCCCEEEEeC
Confidence 4578977643221 112223344444566778877776532 1222222233 4589999875
No 287
>PLN02417 dihydrodipicolinate synthase
Probab=34.34 E-value=2.2e+02 Score=25.11 Aligned_cols=45 Identities=18% Similarity=0.095 Sum_probs=26.3
Q ss_pred hcCEEEeCCCCCCCCcCh-HHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 142 LVNGVLLTGGWAKKGLYF-QIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 142 ~VDGVLLTGG~DVdP~yY-~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
.+|||++.|..-=-+.+- ++-+.+.+.+.+.. +|+.||.+-+|+.
T Consensus 35 Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~-~~~~pvi~gv~~~ 80 (280)
T PLN02417 35 GAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCF-GGKIKVIGNTGSN 80 (280)
T ss_pred CCCEEEECccCcchhhCCHHHHHHHHHHHHHHh-CCCCcEEEECCCc
Confidence 368888877543222222 34456666666653 4666777777753
No 288
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=33.92 E-value=45 Score=30.06 Aligned_cols=41 Identities=15% Similarity=-0.009 Sum_probs=24.5
Q ss_pred HHHhcCEEEeCCCCCCCCcChHHH------HHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 139 KLKLVNGVLLTGGWAKKGLYFQIV------EKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 139 ~Ld~VDGVLLTGG~DVdP~yY~~~------~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
..+.---|+|+||+|+ .|.++ +.|.+++++ |- =-+|||-|.
T Consensus 46 W~~~T~lLV~pGGaDl---pY~~~l~g~g~a~i~~yvk~----GG-~fLGiCAG~ 92 (253)
T COG4285 46 WEETTLLLVFPGGADL---PYVQVLQGLGTARIKNYVKE----GG-NFLGICAGG 92 (253)
T ss_pred chhceEEEEecCCCCc---hHHHHhcchhhhhHHHHHhc----CC-eEEEEeccc
Confidence 3455567999999995 34332 334443332 11 468999875
No 289
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=33.59 E-value=1.5e+02 Score=26.49 Aligned_cols=36 Identities=11% Similarity=-0.181 Sum_probs=21.9
Q ss_pred CCCCcChHH-HHHHHHHHHH-HHhCCCCcceEeeCCcc
Q 028817 153 AKKGLYFQI-VEKIFKHEAI-YERKKQSLVHGITGDVV 188 (203)
Q Consensus 153 DVdP~yY~~-~~~I~~~AL~-~n~~g~~PV~Gic~~~~ 188 (203)
-+.|..|++ +.--+++.++ ....|..+++-+||++-
T Consensus 208 ~lsp~~f~e~~~p~~k~i~~~i~~~g~~~ilH~CG~~~ 245 (340)
T TIGR01463 208 LISPETYKEFGLPYQKRLFAYIKEIGGITVLHICGFTQ 245 (340)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhcCCceEEEECCCch
Confidence 478888875 2222233332 22346679999999974
No 290
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=33.47 E-value=1.6e+02 Score=24.23 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHCCCeEEEeecCCCHH----HHHHHH-HhcCEEEeCCC
Q 028817 109 IAASYVKFVESAGARVIPLIYNEPEE----ILFEKL-KLVNGVLLTGG 151 (203)
Q Consensus 109 I~~sYVkaVe~AGA~PV~LP~~~~~e----~l~~~L-d~VDGVLLTGG 151 (203)
+...-.+.+++.|-.+++.....+.+ .++.++ ..+||+++.++
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~ 64 (273)
T cd01541 17 IIRGIESVLSEKGYSLLLASTNNDPERERKCLENMLSQGIDGLIIEPT 64 (273)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecc
Confidence 44444456677788887766543332 222222 47899998765
No 291
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=33.10 E-value=1.9e+02 Score=23.90 Aligned_cols=43 Identities=14% Similarity=-0.012 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHCCCeEEEeecCCCHHH----HHHHHH-hcCEEEeCCC
Q 028817 109 IAASYVKFVESAGARVIPLIYNEPEEI----LFEKLK-LVNGVLLTGG 151 (203)
Q Consensus 109 I~~sYVkaVe~AGA~PV~LP~~~~~e~----l~~~Ld-~VDGVLLTGG 151 (203)
+.+...++.++.|-.+++.....+.+. ++.++. .+||+++.+.
T Consensus 17 ~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 64 (273)
T cd06309 17 ETKSIKDAAEKRGFDLKFADAQQKQENQISAIRSFIAQGVDVIILAPV 64 (273)
T ss_pred HHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 445555566667777777655433322 222222 4888888653
No 292
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=33.08 E-value=1.8e+02 Score=23.18 Aligned_cols=44 Identities=23% Similarity=0.207 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHCCCeEEEeecCCCHH----HHHHHHH-hcCEEEeCCCC
Q 028817 109 IAASYVKFVESAGARVIPLIYNEPEE----ILFEKLK-LVNGVLLTGGW 152 (203)
Q Consensus 109 I~~sYVkaVe~AGA~PV~LP~~~~~e----~l~~~Ld-~VDGVLLTGG~ 152 (203)
+.+...++.++.|...++.....+.+ .++.+++ .+||+++.+..
T Consensus 17 ~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~ 65 (264)
T cd06267 17 LLRGIEEAAREAGYSVLLCNSDEDPEKEREALELLLSRRVDGIILAPSR 65 (264)
T ss_pred HHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecCC
Confidence 33444444555666666665544322 2333333 67887776654
No 293
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=33.02 E-value=3.1e+02 Score=23.44 Aligned_cols=42 Identities=7% Similarity=-0.051 Sum_probs=24.8
Q ss_pred hhHHHHHHHHH--CCCeEEEeecCCCHH----HHHHHH-HhcCEEEeCC
Q 028817 109 IAASYVKFVES--AGARVIPLIYNEPEE----ILFEKL-KLVNGVLLTG 150 (203)
Q Consensus 109 I~~sYVkaVe~--AGA~PV~LP~~~~~e----~l~~~L-d~VDGVLLTG 150 (203)
+.+..-++.++ .|-..++.....+.+ .++.++ .++||+++.+
T Consensus 17 ~~~gi~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~ 65 (303)
T cd01539 17 VRKNLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNL 65 (303)
T ss_pred HHHHHHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 33444445666 566666666654443 344433 4899999975
No 294
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=32.50 E-value=1.1e+02 Score=31.09 Aligned_cols=69 Identities=13% Similarity=0.158 Sum_probs=47.5
Q ss_pred HCCCeEEEeecCC-----CHHHHHHHHHhcCEEEeCCC----------CCC-----CCcChHHHHHHHHHHHHHHhCCCC
Q 028817 119 SAGARVIPLIYNE-----PEEILFEKLKLVNGVLLTGG----------WAK-----KGLYFQIVEKIFKHEAIYERKKQS 178 (203)
Q Consensus 119 ~AGA~PV~LP~~~-----~~e~l~~~Ld~VDGVLLTGG----------~DV-----dP~yY~~~~~I~~~AL~~n~~g~~ 178 (203)
...-+|++.-... ....++.+++.+|.|++.|| .+| +....+.++.|++++.+++.+=-.
T Consensus 184 ~~p~rP~vaIlGGaKvsdKi~vl~~ll~~~D~iligG~ma~tFl~a~G~~ig~sl~e~~~~~~a~~il~~a~~~~~~i~l 263 (645)
T PRK13962 184 ANPQRPFVAILGGAKVSDKIGVIENLLEKVDKLLIGGGMAYTFLKAKGYEVGKSLVEEDKLDLAKELLAKAEEKGVKLLL 263 (645)
T ss_pred cCCCCceEEEEcCccHHhHHHHHHHHHHhCCEEEECcHHHHHHHHHcCCCCChhhcChhhHHHHHHHHHHHHhcCCEEEC
Confidence 3556776655532 23578889999999999986 233 455667788888888776654444
Q ss_pred cceEeeCCc
Q 028817 179 LVHGITGDV 187 (203)
Q Consensus 179 PV~Gic~~~ 187 (203)
|+=.+|...
T Consensus 264 PvD~~~~~~ 272 (645)
T PRK13962 264 PVDSVVAKE 272 (645)
T ss_pred CcEEEeecc
Confidence 887777653
No 295
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.43 E-value=2.7e+02 Score=22.52 Aligned_cols=37 Identities=30% Similarity=0.326 Sum_probs=20.1
Q ss_pred HHHHHCCCeEEEeecCCCHH----HHHHHHH-hcCEEEeCCC
Q 028817 115 KFVESAGARVIPLIYNEPEE----ILFEKLK-LVNGVLLTGG 151 (203)
Q Consensus 115 kaVe~AGA~PV~LP~~~~~e----~l~~~Ld-~VDGVLLTGG 151 (203)
++.++.|...+......+.+ .++.+++ .+|||++.+.
T Consensus 23 ~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 64 (268)
T cd06289 23 EVLEEAGYTVFLANSGEDVERQEQLLSTMLEHGVAGIILCPA 64 (268)
T ss_pred HHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEeCC
Confidence 45666777666554333332 2333333 4788888753
No 296
>PF02595 Gly_kinase: Glycerate kinase family; InterPro: IPR004381 This family includes glycerate kinase 2 (2.7.1.31 from EC), which catalyses the phosphorylation of (R)-glycerate to 3-phospho-(R)-glycerate in the presence of ATP. These proteins consist of two different alpha/beta domains: domain 1 has a flavodoxin-like fold, while domain 2 has a restriction enzyme-like fold (domain 2 is inserted into domain 1).; GO: 0008887 glycerate kinase activity, 0031388 organic acid phosphorylation; PDB: 3CWC_B 1TO6_A.
Probab=32.17 E-value=12 Score=35.35 Aligned_cols=48 Identities=19% Similarity=0.191 Sum_probs=28.1
Q ss_pred HHHHHHHhcCEEEeCC-CCCCCCcChH-HHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 135 ILFEKLKLVNGVLLTG-GWAKKGLYFQ-IVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 135 ~l~~~Ld~VDGVLLTG-G~DVdP~yY~-~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
.+++.++..| +++|| |.-..-.+++ ....+-++|.+.+ .||+.|||-+
T Consensus 277 ~l~~~l~~aD-lVITGEG~~D~Qtl~GK~p~~Va~~A~~~~----vPviav~G~~ 326 (377)
T PF02595_consen 277 GLEERLEDAD-LVITGEGRLDAQTLAGKVPGGVARLAKKHG----VPVIAVAGSV 326 (377)
T ss_dssp THHHHCCC-S-EEEE--CECSTTTTTTCHHHHHHCCHCCTT------EEEEECEC
T ss_pred CHHHHhcCCC-EEEECccccccccCCCcHHHHHHHHHHHcC----CcEEEEeCCC
Confidence 4677888888 78888 4433335554 4455555554333 5999999974
No 297
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=32.13 E-value=62 Score=26.40 Aligned_cols=44 Identities=14% Similarity=0.114 Sum_probs=33.0
Q ss_pred CcChHHHHHHHHHHHHHHhCCCC-cceEeeCCcccccccc---cccccC
Q 028817 156 GLYFQIVEKIFKHEAIYERKKQS-LVHGITGDVVQKDYYT---WPYHFS 200 (203)
Q Consensus 156 P~yY~~~~~I~~~AL~~n~~g~~-PV~Gic~~~~~~~~~~---~~~~~~ 200 (203)
+.-|..+-...-.+|+..+..+. |++|- |+.+..|+.+ ||..+.
T Consensus 10 ~N~Y~~ai~~vg~il~~Yd~dk~~p~~GF-Ga~~~~~~~vsh~F~ln~~ 57 (146)
T PF07002_consen 10 PNPYQQAIRAVGEILQDYDSDKMIPAYGF-GAKIPPDYSVSHCFPLNGN 57 (146)
T ss_pred CCHHHHHHHHHHHHHHhhccCCccceecc-CCcCCCCcccccceeeecC
Confidence 45677777777777777766555 99995 9999888887 887653
No 298
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=32.09 E-value=2.8e+02 Score=22.50 Aligned_cols=38 Identities=26% Similarity=0.223 Sum_probs=26.9
Q ss_pred HHHHHHHHHCCCeEEEe-ecCCCHHHHHHHHHhcCEEEe
Q 028817 111 ASYVKFVESAGARVIPL-IYNEPEEILFEKLKLVNGVLL 148 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~L-P~~~~~e~l~~~Ld~VDGVLL 148 (203)
..+++.+.+.|..+.+. -.....+.++++...+|+|++
T Consensus 94 ~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~~ 132 (210)
T TIGR01163 94 HRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLL 132 (210)
T ss_pred HHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEEE
Confidence 45667777788766555 223357788888888999988
No 299
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.79 E-value=2.4e+02 Score=22.83 Aligned_cols=43 Identities=21% Similarity=0.355 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHCCCeEEEeecCCCH---HHHHHHH-HhcCEEEeCCC
Q 028817 109 IAASYVKFVESAGARVIPLIYNEPE---EILFEKL-KLVNGVLLTGG 151 (203)
Q Consensus 109 I~~sYVkaVe~AGA~PV~LP~~~~~---e~l~~~L-d~VDGVLLTGG 151 (203)
+.+...+.+++.|...+.+....+. +.++.++ ..+||+++.+.
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 63 (266)
T cd06278 17 LLEALSRALQARGYQPLLINTDDDEDLDAALRQLLQYRVDGVIVTSG 63 (266)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHHcCCCEEEEecC
Confidence 3344455677788888777665433 1222323 46899998764
No 300
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.75 E-value=2.1e+02 Score=23.45 Aligned_cols=45 Identities=27% Similarity=0.317 Sum_probs=27.4
Q ss_pred hhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHH-----HhcCEEEeCCC
Q 028817 107 SYIAASYVKFVESAGARVIPLIYNEPEEILFEKL-----KLVNGVLLTGG 151 (203)
Q Consensus 107 syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~L-----d~VDGVLLTGG 151 (203)
..+.+..-+.+++.|...++.....+.+...+++ ..+|||++.+.
T Consensus 18 ~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 67 (268)
T cd06277 18 SEIYRAIEEEAKKYGYNLILKFVSDEDEEEFELPSFLEDGKVDGIILLGG 67 (268)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeCC
Confidence 3444555566777888888877654432222222 36999999763
No 301
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=31.62 E-value=3.2e+02 Score=25.54 Aligned_cols=41 Identities=12% Similarity=0.109 Sum_probs=29.0
Q ss_pred HHHHHHHHHCCC-eEEEeecCC--CHHHHHHHHH-h-cCEEEeCCC
Q 028817 111 ASYVKFVESAGA-RVIPLIYNE--PEEILFEKLK-L-VNGVLLTGG 151 (203)
Q Consensus 111 ~sYVkaVe~AGA-~PV~LP~~~--~~e~l~~~Ld-~-VDGVLLTGG 151 (203)
..+++.+.++.. .||.+-... +.+++...++ . +|+|.+.|+
T Consensus 202 ~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~ 247 (392)
T cd02808 202 AQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGA 247 (392)
T ss_pred HHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCC
Confidence 667888888765 888776643 3455555554 3 699999996
No 302
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=31.34 E-value=2.2e+02 Score=23.19 Aligned_cols=44 Identities=25% Similarity=0.243 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHCCCeEEEeecCCC-HH----HHHHHHH-hcCEEEeCCCC
Q 028817 109 IAASYVKFVESAGARVIPLIYNEP-EE----ILFEKLK-LVNGVLLTGGW 152 (203)
Q Consensus 109 I~~sYVkaVe~AGA~PV~LP~~~~-~e----~l~~~Ld-~VDGVLLTGG~ 152 (203)
+...-.+++++.|-.++++..... .+ .++.+++ ++||+++.+..
T Consensus 17 ~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~ 66 (264)
T cd01574 17 TLAAIESAAREAGYAVTLSMLAEADEEALRAAVRRLLAQRVDGVIVNAPL 66 (264)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCCCchHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 444444566667877777664322 12 2333333 59999987653
No 303
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=31.29 E-value=79 Score=27.12 Aligned_cols=40 Identities=15% Similarity=0.015 Sum_probs=27.3
Q ss_pred HHHHHHHHHCCCeEEEeecCC-----CHHHHH---HHHHhcCEEEeCC
Q 028817 111 ASYVKFVESAGARVIPLIYNE-----PEEILF---EKLKLVNGVLLTG 150 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~-----~~e~l~---~~Ld~VDGVLLTG 150 (203)
....+.+++.|+.|+.+|..+ +...++ .-++..|.|+||=
T Consensus 16 ~~l~~~l~~~G~~~~~~P~i~i~p~~~~~~~~~~l~~l~~~d~iifTS 63 (255)
T PRK05752 16 AALAASLAEAGIFSSSLPLLAIEPLPETPEQRALLLELDRYCAVIVVS 63 (255)
T ss_pred HHHHHHHHHcCCCEEEcCcEEEeeCCCCHHHHHHHhcCCCCCEEEEEC
Confidence 555678999999999998642 112222 2356778999985
No 304
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=31.19 E-value=3e+02 Score=22.72 Aligned_cols=76 Identities=16% Similarity=0.086 Sum_probs=42.9
Q ss_pred chhhhHHHHHHHHH-CCCeEEEeecCCC-HHHH----------------HHHHHhcCEEEeCCCCCCCCcChH----HHH
Q 028817 106 ASYIAASYVKFVES-AGARVIPLIYNEP-EEIL----------------FEKLKLVNGVLLTGGWAKKGLYFQ----IVE 163 (203)
Q Consensus 106 ~syI~~sYVkaVe~-AGA~PV~LP~~~~-~e~l----------------~~~Ld~VDGVLLTGG~DVdP~yY~----~~~ 163 (203)
...+.+.+.+.+++ .|+.+.++...+. ..++ .+.+...|||+|-- |.|++ ..+
T Consensus 15 T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gs-----Pty~g~~~~~lk 89 (200)
T PRK03767 15 IETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVATPDELADYDAIIFGT-----PTRFGNMAGQMR 89 (200)
T ss_pred HHHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCccCHHHHHhCCEEEEEe-----cccCCCchHHHH
Confidence 34567777788887 8888866654221 1111 45678899998843 44554 344
Q ss_pred HHHHHHHHHH----hCCCC-cceEeeCC
Q 028817 164 KIFKHEAIYE----RKKQS-LVHGITGD 186 (203)
Q Consensus 164 ~I~~~AL~~n----~~g~~-PV~Gic~~ 186 (203)
.+++...... -.|.. -+++.+|+
T Consensus 90 ~fld~~~~~~~~~~l~gK~~~~f~s~g~ 117 (200)
T PRK03767 90 NFLDQTGGLWAKGALVGKVGSVFTSTGT 117 (200)
T ss_pred HHHHHhccccccCCccCCEEEEEEeCCC
Confidence 5555432221 11233 66677753
No 305
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=30.87 E-value=2e+02 Score=25.24 Aligned_cols=44 Identities=9% Similarity=0.169 Sum_probs=23.8
Q ss_pred cCEEEeCCCCCCCCcChH-HHHHHHHHHHHHHhCCCC-cceEeeCCc
Q 028817 143 VNGVLLTGGWAKKGLYFQ-IVEKIFKHEAIYERKKQS-LVHGITGDV 187 (203)
Q Consensus 143 VDGVLLTGG~DVdP~yY~-~~~~I~~~AL~~n~~g~~-PV~Gic~~~ 187 (203)
+|||++.|..-=-+.+-. +-+.+.+.+.+.. +|+. .+.|+++..
T Consensus 36 v~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~-~~~~~vi~gv~~~~ 81 (292)
T PRK03170 36 TDGLVVVGTTGESPTLTHEEHEELIRAVVEAV-NGRVPVIAGTGSNS 81 (292)
T ss_pred CCEEEECCcCCccccCCHHHHHHHHHHHHHHh-CCCCcEEeecCCch
Confidence 677777776432233333 3345666666654 4555 445665543
No 306
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=30.58 E-value=93 Score=24.03 Aligned_cols=61 Identities=10% Similarity=0.124 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHH
Q 028817 109 IAASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIY 172 (203)
Q Consensus 109 I~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~ 172 (203)
+..+-++++++.|...|.+-.+. +......+..|-+++-|+.. .+.-|-+...|.+.+++.
T Consensus 13 ia~r~~ra~r~~Gi~tv~v~s~~--d~~s~~~~~ad~~~~~~~~~-~~~~yl~~e~I~~ia~~~ 73 (110)
T PF00289_consen 13 IAVRIIRALRELGIETVAVNSNP--DTVSTHVDMADEAYFEPPGP-SPESYLNIEAIIDIARKE 73 (110)
T ss_dssp HHHHHHHHHHHTTSEEEEEEEGG--GTTGHHHHHSSEEEEEESSS-GGGTTTSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCcceeccCch--hcccccccccccceecCcch-hhhhhccHHHHhhHhhhh
Confidence 46777889999999999998743 44455789999998888443 457777777888877765
No 307
>PRK00073 pgk phosphoglycerate kinase; Provisional
Probab=30.35 E-value=81 Score=30.04 Aligned_cols=69 Identities=13% Similarity=0.133 Sum_probs=46.4
Q ss_pred HHCCCeEEEeecCC-----CHHHHHHHHHhcCEEEeCCC----------CCC-----CCcChHHHHHHHHHHHHHHhCCC
Q 028817 118 ESAGARVIPLIYNE-----PEEILFEKLKLVNGVLLTGG----------WAK-----KGLYFQIVEKIFKHEAIYERKKQ 177 (203)
Q Consensus 118 e~AGA~PV~LP~~~-----~~e~l~~~Ld~VDGVLLTGG----------~DV-----dP~yY~~~~~I~~~AL~~n~~g~ 177 (203)
.....+|++.-... ....++.+++++|.|++.|| .+| ++...+.++.|++++.+++.+=-
T Consensus 180 l~~p~rP~vaIlGGaKvsdKi~vi~~Ll~~~D~liigG~ma~tFl~A~G~~ig~sl~e~~~i~~a~~il~~a~~~~~~i~ 259 (389)
T PRK00073 180 LENPERPFVAILGGAKVSDKIGVLENLLEKVDKLIIGGGMANTFLKAQGYNVGKSLVEEDLIDTAKELLEKAKEKGVKIP 259 (389)
T ss_pred hcCCCCCeEEEEcCccHHhHHHHHHHHHHhhhhheeChHHHHHHHHHcCCCcChhhcchhhHHHHHHHHHHHHhcCCEEE
Confidence 33457776665532 23578889999999999996 344 44455678888888866654433
Q ss_pred CcceEeeCC
Q 028817 178 SLVHGITGD 186 (203)
Q Consensus 178 ~PV~Gic~~ 186 (203)
.|+=..|..
T Consensus 260 lPvD~vv~~ 268 (389)
T PRK00073 260 LPVDVVVAK 268 (389)
T ss_pred CCCeeEEee
Confidence 388777754
No 308
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=30.29 E-value=2.8e+02 Score=24.12 Aligned_cols=9 Identities=22% Similarity=0.711 Sum_probs=4.8
Q ss_pred cCEEEeCCC
Q 028817 143 VNGVLLTGG 151 (203)
Q Consensus 143 VDGVLLTGG 151 (203)
+|||++.|.
T Consensus 35 v~gl~v~Gs 43 (284)
T cd00950 35 TDGLVVCGT 43 (284)
T ss_pred CCEEEECCC
Confidence 455555554
No 309
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=30.27 E-value=2.5e+02 Score=23.89 Aligned_cols=101 Identities=15% Similarity=0.073 Sum_probs=51.8
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHH---HHHCCCeEEEeecCCCHHHHHHHHHhc---CEEEeCCCCCCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKF---VESAGARVIPLIYNEPEEILFEKLKLV---NGVLLTGGWAKKG 156 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVka---Ve~AGA~PV~LP~~~~~e~l~~~Ld~V---DGVLLTGG~DVdP 156 (203)
++.|+|...... ..+.+-.+.|.+. +.+.|..+|++....+.+..+++.+.+ +.+.+.|-.++.-
T Consensus 121 ~~~i~i~~~~~~---------~~k~w~~~~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~i~~~~~~~~~~~~~~~~~l~e 191 (279)
T cd03789 121 KPVVVLPPGASG---------PAKRWPAERFAALADRLLARGARVVLTGGPAERELAEEIAAALGGPRVVNLAGKTSLRE 191 (279)
T ss_pred CCEEEECCCCCC---------ccccCCHHHHHHHHHHHHHCCCEEEEEechhhHHHHHHHHHhcCCCccccCcCCCCHHH
Confidence 678888665432 1233444455443 444577777776544455566666654 3344555433210
Q ss_pred --------cCh-HHHHHHHHHHHHHHhCCCCcceEeeCCcccccccccccc
Q 028817 157 --------LYF-QIVEKIFKHEAIYERKKQSLVHGITGDVVQKDYYTWPYH 198 (203)
Q Consensus 157 --------~yY-~~~~~I~~~AL~~n~~g~~PV~Gic~~~~~~~~~~~~~~ 198 (203)
..+ ....-.+.+|-.. +-|++++.|.+--+-+ .||.
T Consensus 192 ~~~li~~~~l~I~~Dsg~~HlA~a~----~~p~i~l~g~~~~~~~--~p~~ 236 (279)
T cd03789 192 LAALLARADLVVTNDSGPMHLAAAL----GTPTVALFGPTDPART--GPPG 236 (279)
T ss_pred HHHHHHhCCEEEeeCCHHHHHHHHc----CCCEEEEECCCCcccc--CCCC
Confidence 000 1123444555333 2599999998743332 5553
No 310
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.21 E-value=2.3e+02 Score=23.17 Aligned_cols=41 Identities=15% Similarity=0.058 Sum_probs=23.3
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHH----HHHHHHH-hcCEEEeCCC
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEE----ILFEKLK-LVNGVLLTGG 151 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e----~l~~~Ld-~VDGVLLTGG 151 (203)
..-.+++++.|...++.....+.+ .++.+++ .+|||++...
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (270)
T cd06296 19 RGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSARRTDGVILVTP 64 (270)
T ss_pred HHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHHcCCCEEEEecC
Confidence 343445666787777776544332 2333334 4888887653
No 311
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=30.11 E-value=1e+02 Score=27.36 Aligned_cols=44 Identities=23% Similarity=0.191 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCC
Q 028817 109 IAASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAK 154 (203)
Q Consensus 109 I~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DV 154 (203)
|.+.-++.+.++||++|.+. +.++.+..++...-+++.|==.|+
T Consensus 19 IG~~~v~~La~aGA~ViAva--R~~a~L~sLV~e~p~~I~Pi~~Dl 62 (245)
T KOG1207|consen 19 IGKEIVLSLAKAGAQVIAVA--RNEANLLSLVKETPSLIIPIVGDL 62 (245)
T ss_pred ccHHHHHHHHhcCCEEEEEe--cCHHHHHHHHhhCCcceeeeEecc
Confidence 77889999999999999886 578889999999888877644443
No 312
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=30.05 E-value=2.9e+02 Score=24.55 Aligned_cols=49 Identities=12% Similarity=0.068 Sum_probs=28.5
Q ss_pred HHHHHHHHHh-----cCEEEeCCCCCCCCcCh-HHHHHHHHHHHHHHhCCCCcceE
Q 028817 133 EEILFEKLKL-----VNGVLLTGGWAKKGLYF-QIVEKIFKHEAIYERKKQSLVHG 182 (203)
Q Consensus 133 ~e~l~~~Ld~-----VDGVLLTGG~DVdP~yY-~~~~~I~~~AL~~n~~g~~PV~G 182 (203)
.+.++++++. +|||++.|..-=-+.+- ++-+.+++.+.+.. +|+.||..
T Consensus 20 ~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~-~g~~pvi~ 74 (294)
T TIGR02313 20 EEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQI-AGRIPFAP 74 (294)
T ss_pred HHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHh-CCCCcEEE
Confidence 4455555554 68888888654333333 44456667777654 46666653
No 313
>PRK12440 acetate kinase; Reviewed
Probab=30.04 E-value=33 Score=32.80 Aligned_cols=16 Identities=31% Similarity=0.727 Sum_probs=12.9
Q ss_pred HHHHhcCEEEeCCCCC
Q 028817 138 EKLKLVNGVLLTGGWA 153 (203)
Q Consensus 138 ~~Ld~VDGVLLTGG~D 153 (203)
..|..+|+|+||||--
T Consensus 316 a~l~gvDaiVFTgGIG 331 (397)
T PRK12440 316 AALDSLDGIIFTGGIG 331 (397)
T ss_pred HHhCCCCEEEECCccc
Confidence 3467899999999963
No 314
>PTZ00005 phosphoglycerate kinase; Provisional
Probab=29.83 E-value=2e+02 Score=27.79 Aligned_cols=75 Identities=17% Similarity=0.148 Sum_probs=49.1
Q ss_pred HHHHHHHCCCeEEEeecCC-----CHHHHHHHHHhcCEEEeCCCC-----------CC-----CCcChHHHHHHHHHHHH
Q 028817 113 YVKFVESAGARVIPLIYNE-----PEEILFEKLKLVNGVLLTGGW-----------AK-----KGLYFQIVEKIFKHEAI 171 (203)
Q Consensus 113 YVkaVe~AGA~PV~LP~~~-----~~e~l~~~Ld~VDGVLLTGG~-----------DV-----dP~yY~~~~~I~~~AL~ 171 (203)
|+..+.....+|++.-... ....++.+++.+|.|++.||- +| +....+.++.|++++.+
T Consensus 196 ~L~~~~~~p~rP~vaIlGGaKvsdKi~vl~~Ll~k~D~iligG~ma~tFL~A~~G~~iG~sl~E~~~i~~a~~il~~a~~ 275 (417)
T PTZ00005 196 YFSKALENPQRPFLAILGGAKVADKIQLIKNLLDKVDEMIIGGGMAFTFKKVLDNMPIGKSLFDEEGAKIVKEIMEKAKE 275 (417)
T ss_pred HHHHHhcCCCCceEEEEcCccHHhHHHHHHHHHHhcCEEEECcHHHHHHHHHhCCCccCccccChhhHHHHHHHHHHHHh
Confidence 3444444567886655432 235788899999999998871 22 44556677888888766
Q ss_pred HHhCCCCcceEeeCCc
Q 028817 172 YERKKQSLVHGITGDV 187 (203)
Q Consensus 172 ~n~~g~~PV~Gic~~~ 187 (203)
++.+=-.||=-.|...
T Consensus 276 ~~~~I~lPvD~~v~~~ 291 (417)
T PTZ00005 276 KNVKIHLPVDFVCADK 291 (417)
T ss_pred cCCEEeCCceEEEecc
Confidence 6543334887777653
No 315
>cd02252 nylC_like nylC-like family; composed of proteins with similarity to Flavobacterium endo-type 6-aminohexanoate-oligomer hydrolase (EIII), the product of the nylon oligomer degradation gene, nylC. EIII is an amide hydrolase that catalyzes the degradation of highly-polymerized 6-aminohexanoate oligomers. Together with other nylon degradation enzymes, such as 6-aminohexanoate cyclic dimer hydrolase (EI) and 6-aminohexanoate dimer hydrolase (EII), EIII plays a role in the detoxification and biological removal of the synthetic by-products of nylon manufacture. EIII shows sequence similarity to L-aminopeptidase D-amidase/D-esterase (DmpA), an aminopeptidase that releases N-terminal D and L amino acids from peptide substrates. Like DmpA, EIII undergoes autocatalytic cleavage in front of a nucleophile to form a heterodimer. DmpA shows similarity in catalytic mechanism to N-terminal nucleophile (Ntn) hydrolases, which are enzymes that catalyze the cleavage of amide bonds through the nucl
Probab=29.78 E-value=65 Score=29.19 Aligned_cols=58 Identities=14% Similarity=0.071 Sum_probs=38.9
Q ss_pred HHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhC-----CCCcce--EeeCCccccccccccc
Q 028817 137 FEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERK-----KQSLVH--GITGDVVQKDYYTWPY 197 (203)
Q Consensus 137 ~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~-----g~~PV~--Gic~~~~~~~~~~~~~ 197 (203)
....+++|+|+||||..+- .....-++++..+++.. ...||. ++|=|-.-.|+...|+
T Consensus 52 ~~~v~~v~aIvLtggsa~G---L~aa~gv~~~l~e~g~g~~~~~~~vPIV~~a~~~Dl~~~d~~~~p~ 116 (260)
T cd02252 52 ENLVQKVHAIVLSGGSAFG---LAAADGVMRALEERGVGFPVGVPVVPIVPAAVLFDLGGGDKRWRPD 116 (260)
T ss_pred ccccccccEEEEeCCchhh---HHHHHHHHHHHHHhCCCCCCCCceecEeCeEEEeccccCCCCCCCC
Confidence 4568999999999998632 14556666666666443 122888 7877766677665554
No 316
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=29.56 E-value=2.8e+02 Score=24.27 Aligned_cols=42 Identities=12% Similarity=0.084 Sum_probs=21.5
Q ss_pred cCEEEeCCCCCCCCcChH-HHHHHHHHHHHHHhCCCCcceEeeC
Q 028817 143 VNGVLLTGGWAKKGLYFQ-IVEKIFKHEAIYERKKQSLVHGITG 185 (203)
Q Consensus 143 VDGVLLTGG~DVdP~yY~-~~~~I~~~AL~~n~~g~~PV~Gic~ 185 (203)
+|||++.|..-=-+.+-. +-+.+++.+.+.. +|+.||+.-+|
T Consensus 33 v~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~-~~~~~vi~gv~ 75 (285)
T TIGR00674 33 TDAIVVVGTTGESPTLSHEEHKKVIEFVVDLV-NGRVPVIAGTG 75 (285)
T ss_pred CCEEEECccCcccccCCHHHHHHHHHHHHHHh-CCCCeEEEeCC
Confidence 678877775322222323 3345666666654 45555444333
No 317
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=29.56 E-value=3.2e+02 Score=24.51 Aligned_cols=60 Identities=20% Similarity=0.197 Sum_probs=36.9
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHH----HHHHHH-hcCEEEeCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEI----LFEKLK-LVNGVLLTG 150 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~----l~~~Ld-~VDGVLLTG 150 (203)
.-+||+....... ....-+.+.--+.+++.|-..++.....+.+. ++.+++ ++|||++.|
T Consensus 58 s~~Ig~i~p~~~~--------~~~~~i~~gi~~~~~~~gy~~~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~ 122 (333)
T COG1609 58 TKTIGLVVPDITN--------PFFAEILKGIEEAAREAGYSLLLANTDDDPEKEREYLETLLQKRVDGLILLG 122 (333)
T ss_pred CCEEEEEeCCCCC--------chHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 3589987663221 11222334444556778999988887765443 333333 699999999
No 318
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=29.33 E-value=1e+02 Score=27.10 Aligned_cols=41 Identities=17% Similarity=0.081 Sum_probs=28.2
Q ss_pred HHHHHHHHHCCCeEEEeecCC----CHHHHH---HHHHhcCEEEeCCC
Q 028817 111 ASYVKFVESAGARVIPLIYNE----PEEILF---EKLKLVNGVLLTGG 151 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~----~~e~l~---~~Ld~VDGVLLTGG 151 (203)
....+.+++.|+.++.+|... +...+. +-|+..|.|+||-.
T Consensus 31 ~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~l~~l~~~d~iiftS~ 78 (266)
T PRK08811 31 APLRRAVARHGGRLLALSPWRLQRLDTAQARDALRQALAAPIVVFTSP 78 (266)
T ss_pred HHHHHHHHHCCCcEEEcCceeecCCCchhHHHHHhhcccCCEEEEECH
Confidence 566688999999999999832 111222 23447799999964
No 319
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=29.32 E-value=1e+02 Score=24.03 Aligned_cols=47 Identities=21% Similarity=0.255 Sum_probs=29.8
Q ss_pred HHHHH-HHHHCCCeEEEeecC-CCHHHHHH----HHHhcCEEEeCCCCCCCCc
Q 028817 111 ASYVK-FVESAGARVIPLIYN-EPEEILFE----KLKLVNGVLLTGGWAKKGL 157 (203)
Q Consensus 111 ~sYVk-aVe~AGA~PV~LP~~-~~~e~l~~----~Ld~VDGVLLTGG~DVdP~ 157 (203)
..+++ .+++.|+.+.-.... ++.+.+.+ .++..|-|+.+||--+.+.
T Consensus 19 ~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~D~VittGG~g~~~~ 71 (144)
T PF00994_consen 19 GPFLAALLEELGIEVIRYGIVPDDPDAIKEALRRALDRADLVITTGGTGPGPD 71 (144)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHHHTTSEEEEESSSSSSTT
T ss_pred HHHHHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhhccCCEEEEcCCcCcccC
Confidence 34444 467899987644332 34554444 4467899999999765443
No 320
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=29.24 E-value=1.3e+02 Score=29.09 Aligned_cols=69 Identities=10% Similarity=-0.010 Sum_probs=48.7
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
++.-++++..|-..-.+-. +.+ +...|-|+|+|=....|..=.-.+.=|.+.|.+......|+.|||=|
T Consensus 15 ~si~nal~hlg~~i~~v~~--P~D-----I~~a~rLIfPGVGnfg~~~D~L~~~Gf~eplr~YiesgkPfmgicvG 83 (541)
T KOG0623|consen 15 RSIRNALRHLGFSIKDVQT--PGD-----ILNADRLIFPGVGNFGPAMDVLNRTGFAEPLRKYIESGKPFMGICVG 83 (541)
T ss_pred HHHHHHHHhcCceeeeccC--chh-----hccCceEeecCcccchHHHHHHhhhhhHHHHHHHHhcCCCeEeehhh
Confidence 3444678888876655542 222 56779999999776555444445666788888888888899999976
No 321
>PRK12379 propionate/acetate kinase; Provisional
Probab=29.14 E-value=34 Score=32.68 Aligned_cols=15 Identities=33% Similarity=0.787 Sum_probs=12.4
Q ss_pred HHHhcCEEEeCCCCC
Q 028817 139 KLKLVNGVLLTGGWA 153 (203)
Q Consensus 139 ~Ld~VDGVLLTGG~D 153 (203)
.|..+|+|+||||--
T Consensus 314 ~L~~vDaIVFTGGIG 328 (396)
T PRK12379 314 SLHRLDGIIFTGGIG 328 (396)
T ss_pred HhCCCCEEEECCccc
Confidence 457899999999953
No 322
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=28.92 E-value=2.6e+02 Score=25.80 Aligned_cols=42 Identities=12% Similarity=0.227 Sum_probs=27.8
Q ss_pred EEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCccc
Q 028817 146 VLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDVVQ 189 (203)
Q Consensus 146 VLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~~~ 189 (203)
++|.||.. ..-.+++..+++.+++.+..++..|.||=||++.
T Consensus 56 ~~~~~~e~--~k~~~~v~~~~~~~~~~~~dr~~~IIAvGGGsv~ 97 (355)
T cd08197 56 LSVPSGEE--HKTLSTLSDLVERALALGATRRSVIVALGGGVVG 97 (355)
T ss_pred EEeCCCCC--CCCHHHHHHHHHHHHHcCCCCCcEEEEECCcHHH
Confidence 45555532 2345677777787777777666678887777663
No 323
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=28.84 E-value=2.6e+02 Score=23.05 Aligned_cols=43 Identities=9% Similarity=-0.034 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHCCCeEEEeecCC-CHHHHHHHH-----HhcCEEEeCCC
Q 028817 109 IAASYVKFVESAGARVIPLIYNE-PEEILFEKL-----KLVNGVLLTGG 151 (203)
Q Consensus 109 I~~sYVkaVe~AGA~PV~LP~~~-~~e~l~~~L-----d~VDGVLLTGG 151 (203)
+.+..-+++++.|-.+++..... +.+...+.+ +.+||+++.+.
T Consensus 18 ~~~g~~~~~~~~g~~v~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 66 (271)
T cd06312 18 VKNGAEDAAKDLGVDVEYRGPETFDVADMARLIEAAIAAKPDGIVVTIP 66 (271)
T ss_pred HHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 34444455666777766665543 333333333 35788888763
No 324
>cd08585 GDPD_like_3 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity with Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=28.84 E-value=1.3e+02 Score=25.85 Aligned_cols=42 Identities=17% Similarity=0.309 Sum_probs=34.3
Q ss_pred hhhHHHHHHHHHC-CCeEEEeecCCCHHHHHHHHHhcCEEEeCC
Q 028817 108 YIAASYVKFVESA-GARVIPLIYNEPEEILFEKLKLVNGVLLTG 150 (203)
Q Consensus 108 yI~~sYVkaVe~A-GA~PV~LP~~~~~e~l~~~Ld~VDGVLLTG 150 (203)
.+...+|+.+.++ |-.+.+.-.+ +.++...++++-|+++|-|
T Consensus 195 ~~~~~~v~~~~~~~G~~v~vWTVn-d~~~~~~l~~~G~~~i~~~ 237 (237)
T cd08585 195 DLPNPFVTLARALLGMPVIVWTVR-TEEDIARLKQYADNIIFEG 237 (237)
T ss_pred hCcCHHHHHHHHhcCCcEEEEeCC-CHHHHHHHHHhCCeeEeCC
Confidence 4567788999998 9887777765 6778889999999999876
No 325
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=28.55 E-value=3.3e+02 Score=22.32 Aligned_cols=44 Identities=7% Similarity=0.082 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHHC---CC--eEEEeecCCCHH----HHHHHH-HhcCEEEeCCC
Q 028817 108 YIAASYVKFVESA---GA--RVIPLIYNEPEE----ILFEKL-KLVNGVLLTGG 151 (203)
Q Consensus 108 yI~~sYVkaVe~A---GA--~PV~LP~~~~~e----~l~~~L-d~VDGVLLTGG 151 (203)
.+.+..-+++++. |- ..++.....+.+ .++.++ +.+|||++.+.
T Consensus 16 ~~~~~i~~~~~~~~~~g~~~~l~i~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~ 69 (272)
T cd06300 16 QMLDEFKAQAKELKKAGLISEFIVTSADGDVAQQIADIRNLIAQGVDAIIINPA 69 (272)
T ss_pred HHHHHHHHHHHhhhccCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3445555556666 65 345554433332 333333 38999999764
No 326
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=27.80 E-value=96 Score=26.17 Aligned_cols=41 Identities=15% Similarity=0.197 Sum_probs=27.0
Q ss_pred HHHHHHHHHCCCeEEEeecCCCH---HHHHHHH-HhcCEEEeCCC
Q 028817 111 ASYVKFVESAGARVIPLIYNEPE---EILFEKL-KLVNGVLLTGG 151 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~---e~l~~~L-d~VDGVLLTGG 151 (203)
....+.+++.|+.++.+|..+-. +...+.+ +..|+|+||-.
T Consensus 13 ~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~l~~~~d~iifTS~ 57 (240)
T PRK09189 13 ERTAARLRAMGHEPVLLPLSRPVHDVAAAFTALSEPHGAIAVTSA 57 (240)
T ss_pred HHHHHHHHHCCCceEEecccccccChhhhhhhhcCCcCEEEEECH
Confidence 44556799999999999975421 2222223 34689999863
No 327
>PF14272 Gly_rich_SFCGS: Glycine-rich SFCGS
Probab=27.79 E-value=1e+02 Score=24.52 Aligned_cols=40 Identities=28% Similarity=0.281 Sum_probs=30.8
Q ss_pred HHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcC---EEEeCCC
Q 028817 112 SYVKFVESAGARVIPLIYNEPEEILFEKLKLVN---GVLLTGG 151 (203)
Q Consensus 112 sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VD---GVLLTGG 151 (203)
...+.||+||+.+++||-...+..+-++++.=+ |+-|.|.
T Consensus 14 ~Va~GveaAGG~aivipG~~ADmklGdvM~~e~Ad~GiSFCGS 56 (115)
T PF14272_consen 14 KVAKGVEAAGGKAIVIPGVGADMKLGDVMKKENADFGISFCGS 56 (115)
T ss_pred hHhhHHHhcCCeEEEecCccccchHHHHHHhhCCCcceEEecC
Confidence 334679999999999998766667777776544 7889884
No 328
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=27.71 E-value=2.5e+02 Score=24.71 Aligned_cols=39 Identities=18% Similarity=0.200 Sum_probs=28.4
Q ss_pred HHHHHHHHHCCCeEE-EeecCCCHHHHHHHHHhcCEEEeC
Q 028817 111 ASYVKFVESAGARVI-PLIYNEPEEILFEKLKLVNGVLLT 149 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV-~LP~~~~~e~l~~~Ld~VDGVLLT 149 (203)
..+++.+.+.|..++ .+.++.+.++++.+++..||.+.-
T Consensus 130 ~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~ 169 (256)
T TIGR00262 130 GDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYL 169 (256)
T ss_pred HHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEE
Confidence 556677777887765 444455678899999999976664
No 329
>PRK07058 acetate kinase; Provisional
Probab=27.52 E-value=38 Score=32.39 Aligned_cols=15 Identities=27% Similarity=0.415 Sum_probs=12.6
Q ss_pred HHHhcCEEEeCCCCC
Q 028817 139 KLKLVNGVLLTGGWA 153 (203)
Q Consensus 139 ~Ld~VDGVLLTGG~D 153 (203)
.|..+|+|+||||--
T Consensus 315 ~Lg~vDaiVfTGGIg 329 (396)
T PRK07058 315 TLGGLDAVVFTAGIG 329 (396)
T ss_pred HhCCCCEEEECCccc
Confidence 457899999999964
No 330
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=27.27 E-value=2.1e+02 Score=24.43 Aligned_cols=42 Identities=7% Similarity=0.037 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHCCCeEEEe-ecCCCHHHHHHHH-----HhcCEEEeCC
Q 028817 109 IAASYVKFVESAGARVIPL-IYNEPEEILFEKL-----KLVNGVLLTG 150 (203)
Q Consensus 109 I~~sYVkaVe~AGA~PV~L-P~~~~~e~l~~~L-----d~VDGVLLTG 150 (203)
+.+.--++.++.|-..+++ +...+.+...+.+ .++|||++.+
T Consensus 17 i~~gi~~~a~~~g~~v~~~~~~~~d~~~~~~~i~~~~~~~~DgiIi~~ 64 (298)
T cd06302 17 MEEGAKEAAKELGVDAIYVGPTTADAAGQVQIIEDLIAQGVDAIAVVP 64 (298)
T ss_pred HHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEEEec
Confidence 4444444566677777664 4433333222322 2578888865
No 331
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=27.23 E-value=1.6e+02 Score=27.94 Aligned_cols=50 Identities=16% Similarity=0.162 Sum_probs=31.7
Q ss_pred HHHHHHHHCCCeEEEeecC--------------CCHHHHHHHHHh-----cCEEEe------CCCCCCCCcChHH
Q 028817 112 SYVKFVESAGARVIPLIYN--------------EPEEILFEKLKL-----VNGVLL------TGGWAKKGLYFQI 161 (203)
Q Consensus 112 sYVkaVe~AGA~PV~LP~~--------------~~~e~l~~~Ld~-----VDGVLL------TGG~DVdP~yY~~ 161 (203)
.|...++.+|++||.++.. .+.+.+++.+.. +-.|++ +||..++....++
T Consensus 103 ~~~~~i~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~ 177 (431)
T cd00617 103 TTRGHIEANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLRE 177 (431)
T ss_pred chHHHHHhCCCEeEEEecccccccccccCCCCCcCHHHHHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHH
Confidence 3446789999999988774 245566666653 234665 4777666554433
No 332
>PRK12493 magnesium chelatase subunit H; Provisional
Probab=26.79 E-value=2.2e+02 Score=31.35 Aligned_cols=63 Identities=25% Similarity=0.263 Sum_probs=39.3
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecC--CCHHHHHHHHHh--------cCEEE-eCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYN--EPEEILFEKLKL--------VNGVL-LTGG 151 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~--~~~e~l~~~Ld~--------VDGVL-LTGG 151 (203)
+|+|||+......- ..+..++ ..-++++|+.|..|+++-.. .....+++++.. +|+|| ++|.
T Consensus 253 ~p~Vgil~~r~~~~------~~d~~~~-dalI~~LE~~G~~vipvf~~gl~~~~~v~~~~~~~~~~~~~~vDaiI~~t~F 325 (1310)
T PRK12493 253 APTVGLLLQRTHLL------TGNDAHY-VALIQELEARGARVIPAYAGGLDFRKPVEAFFYDPGNPDTPLVDLVVSLTGF 325 (1310)
T ss_pred CCEEEEEEchhhhh------cCCcHHH-HHHHHHHHHCCCeEEEEEecCcccchHHHHHHHhhcccCCCCccEEEEcCcc
Confidence 79999988754311 1122233 46778899999988887543 223445555544 89998 5554
Q ss_pred C
Q 028817 152 W 152 (203)
Q Consensus 152 ~ 152 (203)
.
T Consensus 326 ~ 326 (1310)
T PRK12493 326 A 326 (1310)
T ss_pred c
Confidence 3
No 333
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=26.53 E-value=3.2e+02 Score=21.47 Aligned_cols=34 Identities=29% Similarity=0.327 Sum_probs=24.8
Q ss_pred CCCeEEEeecCC--CHH-HHHHHHHhcCEEEeCCCCC
Q 028817 120 AGARVIPLIYNE--PEE-ILFEKLKLVNGVLLTGGWA 153 (203)
Q Consensus 120 AGA~PV~LP~~~--~~e-~l~~~Ld~VDGVLLTGG~D 153 (203)
.+.++|.+|... +.. .++.+.+..|||++.|-..
T Consensus 27 ~~vriIrvpC~Grv~~~~il~Af~~GADGV~V~gC~~ 63 (124)
T PF02662_consen 27 PNVRIIRVPCSGRVDPEFILRAFEKGADGVLVAGCHP 63 (124)
T ss_pred CCeEEEEccCCCccCHHHHHHHHHcCCCEEEEeCCCC
Confidence 568888888753 343 4555667799999999663
No 334
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=26.27 E-value=3.6e+02 Score=22.14 Aligned_cols=37 Identities=8% Similarity=0.153 Sum_probs=23.5
Q ss_pred HHHHCCCeEEEeecCC-CHHHHHHHHH-------hcCEEEeCCCC
Q 028817 116 FVESAGARVIPLIYNE-PEEILFEKLK-------LVNGVLLTGGW 152 (203)
Q Consensus 116 aVe~AGA~PV~LP~~~-~~e~l~~~Ld-------~VDGVLLTGG~ 152 (203)
.++..|.....++.+. +.+.+++.++ .+|+|+...|.
T Consensus 52 ~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 96 (254)
T PRK08085 52 KLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIGPIDVLINNAGI 96 (254)
T ss_pred HHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 3445566666666653 4455555544 37999999885
No 335
>PLN02282 phosphoglycerate kinase
Probab=26.20 E-value=1.3e+02 Score=28.80 Aligned_cols=69 Identities=12% Similarity=0.099 Sum_probs=45.8
Q ss_pred HHCCCeEEEeecCC-----CHHHHHHHHHhcCEEEeCCC----------CCCC-----CcChHHHHHHHHHHHHHHhCCC
Q 028817 118 ESAGARVIPLIYNE-----PEEILFEKLKLVNGVLLTGG----------WAKK-----GLYFQIVEKIFKHEAIYERKKQ 177 (203)
Q Consensus 118 e~AGA~PV~LP~~~-----~~e~l~~~Ld~VDGVLLTGG----------~DVd-----P~yY~~~~~I~~~AL~~n~~g~ 177 (203)
.....+|++.-... ....++.+++.+|.|++.|| -+|. ....+.++.|++++.+++.+=-
T Consensus 187 l~~p~rP~vaIlGGaKvsdKi~vi~~Ll~kvD~lliGG~ma~tFl~A~G~~iG~sl~e~d~i~~a~~il~~a~~~g~~I~ 266 (401)
T PLN02282 187 VANPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGYSVGSSLVEEDKLDLATSLIEKAKAKGVSLL 266 (401)
T ss_pred hcCCCCCeEEEEcCCcHHhHHHHHHHHHHhhhhheeccHHHHHHHHHcCCCcChhhcChhhHHHHHHHHHHHHhcCCEEe
Confidence 33456776665532 23577889999999999996 3443 4455668888888776554433
Q ss_pred CcceEeeCC
Q 028817 178 SLVHGITGD 186 (203)
Q Consensus 178 ~PV~Gic~~ 186 (203)
.||=-+|..
T Consensus 267 lPvD~v~~~ 275 (401)
T PLN02282 267 LPTDVVIAD 275 (401)
T ss_pred CCceEEEec
Confidence 488777754
No 336
>PRK05867 short chain dehydrogenase; Provisional
Probab=26.09 E-value=3.5e+02 Score=22.29 Aligned_cols=39 Identities=13% Similarity=0.271 Sum_probs=22.1
Q ss_pred HHHHHHCCCeEEEeecCC-CHHHHHHHHH-------hcCEEEeCCCC
Q 028817 114 VKFVESAGARVIPLIYNE-PEEILFEKLK-------LVNGVLLTGGW 152 (203)
Q Consensus 114 VkaVe~AGA~PV~LP~~~-~~e~l~~~Ld-------~VDGVLLTGG~ 152 (203)
.+.++..|.....+..+. +.+.+++.++ .+|+|+..-|.
T Consensus 50 ~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv~~ag~ 96 (253)
T PRK05867 50 ADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGGIDIAVCNAGI 96 (253)
T ss_pred HHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 344555555555555443 4444444443 68999987664
No 337
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=25.30 E-value=43 Score=32.13 Aligned_cols=16 Identities=19% Similarity=0.287 Sum_probs=13.3
Q ss_pred HHHHHhcCEEEeCCCC
Q 028817 137 FEKLKLVNGVLLTGGW 152 (203)
Q Consensus 137 ~~~Ld~VDGVLLTGG~ 152 (203)
...|+.+|+|+||||-
T Consensus 314 ~a~L~glDaiVFTaGI 329 (396)
T COG0282 314 AAALGGLDALVFTAGI 329 (396)
T ss_pred HHHhCCCCEEEEeCcc
Confidence 3457889999999995
No 338
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.22 E-value=1.1e+02 Score=25.68 Aligned_cols=39 Identities=21% Similarity=0.292 Sum_probs=26.3
Q ss_pred HHhcCEEEeCCCCCC--CCcChHHHHHHHHHHHHHHhCCCCcceEee
Q 028817 140 LKLVNGVLLTGGWAK--KGLYFQIVEKIFKHEAIYERKKQSLVHGIT 184 (203)
Q Consensus 140 Ld~VDGVLLTGG~DV--dP~yY~~~~~I~~~AL~~n~~g~~PV~Gic 184 (203)
++.+|.|+|-||-.. -..--+.+|.+.+ ..|..++.|.|
T Consensus 83 ~n~aDvvVLlGGLaMP~~gv~~d~~kel~e------e~~~kkliGvC 123 (154)
T COG4090 83 LNSADVVVLLGGLAMPKIGVTPDDAKELLE------ELGNKKLIGVC 123 (154)
T ss_pred cccccEEEEEcccccCcCCCCHHHHHHHHH------hcCCCceEEee
Confidence 678999999999652 2222345555555 44555899999
No 339
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=25.20 E-value=1.5e+02 Score=26.92 Aligned_cols=42 Identities=21% Similarity=0.173 Sum_probs=28.1
Q ss_pred HHHHHHHHHCCCeEEEeecCC-----CHHHHHHHH-----HhcCEEEeCCCC
Q 028817 111 ASYVKFVESAGARVIPLIYNE-----PEEILFEKL-----KLVNGVLLTGGW 152 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~-----~~e~l~~~L-----d~VDGVLLTGG~ 152 (203)
....+.+++.|+.|+.+|... +...+++.+ +..|.|+||=+.
T Consensus 23 ~~la~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~~~~l~~~~~d~vvfTS~n 74 (381)
T PRK07239 23 EELAALLERRGARVVHAPALRIVPLADDDELRAATRALIAAPPDIVVATTGI 74 (381)
T ss_pred HHHHHHHHHcCCeEEEecCEEEecCCCcHHHHHHHHHHHcCCCCEEEEeChH
Confidence 555678999999999997643 122233333 356899999753
No 340
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=25.10 E-value=2.7e+02 Score=23.09 Aligned_cols=42 Identities=14% Similarity=0.023 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHCCCeEEEeecCC--CHH----HHHHHH-HhcCEEEeCC
Q 028817 109 IAASYVKFVESAGARVIPLIYNE--PEE----ILFEKL-KLVNGVLLTG 150 (203)
Q Consensus 109 I~~sYVkaVe~AGA~PV~LP~~~--~~e----~l~~~L-d~VDGVLLTG 150 (203)
+.+.--+++++.|..++++.... +.+ .++.++ .++|||++.+
T Consensus 17 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiI~~~ 65 (268)
T cd06306 17 VNYGMVEEAKRLGVSLKLLEAGGYPNLAKQIAQLEDCAAWGADAILLGA 65 (268)
T ss_pred HHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 33444456677888887775432 222 333333 4889998875
No 341
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=25.03 E-value=45 Score=26.99 Aligned_cols=54 Identities=24% Similarity=0.276 Sum_probs=34.8
Q ss_pred HHHHHHHCCCeEEEeecCC----------CHHHHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHH
Q 028817 113 YVKFVESAGARVIPLIYNE----------PEEILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEA 170 (203)
Q Consensus 113 YVkaVe~AGA~PV~LP~~~----------~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL 170 (203)
+++.+.+.+..+.++=-+. ..++.+++|+.+|-|++||..-++ ++...|++++.
T Consensus 23 ~~~~l~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGsTlvN----~Ti~~iL~~~~ 86 (147)
T PF04016_consen 23 LVEKLKERGAEVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGSTLVN----GTIDDILELAR 86 (147)
T ss_dssp CHHHHCCCCSEEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECHHCCT----TTHHHHHHHTT
T ss_pred HHHHHhcCCCCEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEeeeeec----CCHHHHHHhCc
Confidence 4455555666666664432 344678899999999999988766 34455555544
No 342
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=24.90 E-value=4.6e+02 Score=22.79 Aligned_cols=78 Identities=6% Similarity=-0.006 Sum_probs=46.1
Q ss_pred EEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeec------CCC------HHHHHHHHHhcCEEEeCCCC
Q 028817 85 VIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIY------NEP------EEILFEKLKLVNGVLLTGGW 152 (203)
Q Consensus 85 VIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~------~~~------~e~l~~~Ld~VDGVLLTGG~ 152 (203)
|++|.++.+.+. ....+.+...+.+...|+.+-++-. +.+ ...+.+.++..|||+|
T Consensus 29 I~~I~GSlR~~S--------~n~~la~~~~~~~~~~g~~v~~idl~~lPl~~~d~~~~p~v~~l~~~v~~ADgvii---- 96 (219)
T TIGR02690 29 ILLLYGSLRERS--------YSRLLAEEAARLLGCEGRETRIFDPPGLPLPDAAHADHPKVRELRQLSEWSEGQVW---- 96 (219)
T ss_pred EEEEECCCCCcc--------hHHHHHHHHHHHHhhcCCEEEEeCcccCCCCCcCcccCHHHHHHHHHHHhCCEEEE----
Confidence 556666665432 1223444444455556776644422 111 1346788899999999
Q ss_pred CCCCcChHHHHHHHHHHHHHHhC
Q 028817 153 AKKGLYFQIVEKIFKHEAIYERK 175 (203)
Q Consensus 153 DVdP~yY~~~~~I~~~AL~~n~~ 175 (203)
+.|.|=+..--.+|-+|++-..
T Consensus 97 -~TPEYn~sipg~LKNaiDwls~ 118 (219)
T TIGR02690 97 -CSPERHGAITGSQKDQIDWIPL 118 (219)
T ss_pred -eCCccccCcCHHHHHHHHhccc
Confidence 6788877766666777775544
No 343
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=24.82 E-value=3.6e+02 Score=23.57 Aligned_cols=95 Identities=15% Similarity=0.156 Sum_probs=48.9
Q ss_pred CCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHH---HHCCCeEEEeecCCCHHHHHHHHHhcCE-EE-eCCCCCCC-
Q 028817 82 NRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFV---ESAGARVIPLIYNEPEEILFEKLKLVNG-VL-LTGGWAKK- 155 (203)
Q Consensus 82 ~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaV---e~AGA~PV~LP~~~~~e~l~~~Ld~VDG-VL-LTGG~DVd- 155 (203)
.+|.|+|-.....+ ..+.|-.+.|.+.+ .+.|..+|++-...+.+..+++.+.++. ++ ++|-.++.
T Consensus 173 ~~~~i~i~pga~~~--------~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~~~~~~~~l~g~~sL~e 244 (334)
T TIGR02195 173 ERPIIAFCPGAEFG--------PAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEALLPGELRNLAGETSLDE 244 (334)
T ss_pred CCCEEEEcCCCCCC--------ccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHhCCcccccCCCCCCHHH
Confidence 47899886543211 13445555555544 3346666665433344555666666543 22 44433310
Q ss_pred -------C-cChHHHHHHHHHHHHHHhCCCCcceEeeCCcc
Q 028817 156 -------G-LYFQIVEKIFKHEAIYERKKQSLVHGITGDVV 188 (203)
Q Consensus 156 -------P-~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~~ 188 (203)
- .+-....-.++.|--.+ -|+.|+.|-|-
T Consensus 245 l~ali~~a~l~I~~DSGp~HlAaA~~----~P~i~lfG~t~ 281 (334)
T TIGR02195 245 AVDLIALAKAVVTNDSGLMHVAAALN----RPLVALYGSTS 281 (334)
T ss_pred HHHHHHhCCEEEeeCCHHHHHHHHcC----CCEEEEECCCC
Confidence 0 01112334555555444 69999999773
No 344
>PRK12608 transcription termination factor Rho; Provisional
Probab=24.57 E-value=4.5e+02 Score=25.09 Aligned_cols=77 Identities=10% Similarity=0.151 Sum_probs=51.8
Q ss_pred CchhhhHHHHHHHHHC--CCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChH-HHHHHHHHHHHHHhCCCCcce
Q 028817 105 NASYIAASYVKFVESA--GARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQ-IVEKIFKHEAIYERKKQSLVH 181 (203)
Q Consensus 105 ~~syI~~sYVkaVe~A--GA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~-~~~~I~~~AL~~n~~g~~PV~ 181 (203)
.++.+.+..++.+... +...+++-..+...+..++++.+.+++.....|-.+..+- ....+.+.|....++|...|+
T Consensus 145 GKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVL 224 (380)
T PRK12608 145 GKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAKRLVEQGKDVVI 224 (380)
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 5678888888888664 3332332234455567788888888887666666665543 456788888888888887554
No 345
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=24.56 E-value=4e+02 Score=21.92 Aligned_cols=43 Identities=7% Similarity=-0.053 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHC-----CCeEEEeecCCCHH----HHHHHHH-hcCEEEeCCC
Q 028817 109 IAASYVKFVESA-----GARVIPLIYNEPEE----ILFEKLK-LVNGVLLTGG 151 (203)
Q Consensus 109 I~~sYVkaVe~A-----GA~PV~LP~~~~~e----~l~~~Ld-~VDGVLLTGG 151 (203)
+.+.--++.++. |...++.....+.+ .++.++. .+|||++.+.
T Consensus 17 ~~~gi~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vDgiii~~~ 69 (274)
T cd06311 17 IVWHAQAAAKKLEAAYPDVEFILVTASNDTEQQNAQQDLLINRKIDALVILPF 69 (274)
T ss_pred HHHHHHHHHHHhhhhCCCeEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 334444455555 45655555433332 2333554 6999999753
No 346
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=24.55 E-value=3.6e+02 Score=25.85 Aligned_cols=78 Identities=14% Similarity=0.107 Sum_probs=57.1
Q ss_pred hhhHHHHHHHHHCCCeEEEeecCC-CHHHHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCC-cceEeeC
Q 028817 108 YIAASYVKFVESAGARVIPLIYNE-PEEILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQS-LVHGITG 185 (203)
Q Consensus 108 yI~~sYVkaVe~AGA~PV~LP~~~-~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~-PV~Gic~ 185 (203)
.+++.-.+.+.+.|..+.++-... +.+++.+.+...+||++ |...+.-..|-.+...+-+.+..+.+++. -|+|-.|
T Consensus 262 ~ma~aiaegl~~~gv~v~~~~~~~~~~~eI~~~i~~a~~~vv-GsPT~~~~~~p~i~~~l~~v~~~~~~~k~~~vfgS~G 340 (388)
T COG0426 262 KMAQAIAEGLMKEGVDVEVINLEDADPSEIVEEILDAKGLVV-GSPTINGGAHPPIQTALGYVLALAPKNKLAGVFGSYG 340 (388)
T ss_pred HHHHHHHHHhhhcCCceEEEEcccCCHHHHHHHHhhcceEEE-ecCcccCCCCchHHHHHHHHHhccCcCceEEEEeccC
Confidence 355666667889998888877643 56788888888999987 55566666666788888888887777777 6666555
Q ss_pred C
Q 028817 186 D 186 (203)
Q Consensus 186 ~ 186 (203)
+
T Consensus 341 W 341 (388)
T COG0426 341 W 341 (388)
T ss_pred C
Confidence 4
No 347
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=24.52 E-value=1.4e+02 Score=26.80 Aligned_cols=55 Identities=16% Similarity=0.268 Sum_probs=37.8
Q ss_pred EEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCC----HHHHHHHHHhcCE--EEeCCCCC
Q 028817 85 VIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEP----EEILFEKLKLVNG--VLLTGGWA 153 (203)
Q Consensus 85 VIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~----~e~l~~~Ld~VDG--VLLTGG~D 153 (203)
+||++++.+- ..+..|+...+..=+||++|...+ +-..++..+.-|| |+=||..+
T Consensus 110 lIG~S~~~g~--------------ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t~G~ai~AtGspf 170 (254)
T cd00762 110 LIGVSRVGGA--------------FTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATEGRAIFASGSPF 170 (254)
T ss_pred EEEeCCCCCC--------------CCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhcCCCEEEEECCCC
Confidence 6887776531 346677777777789999997543 3366788899888 55566543
No 348
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=24.17 E-value=4.6e+02 Score=23.09 Aligned_cols=41 Identities=10% Similarity=0.020 Sum_probs=22.3
Q ss_pred cCEEEeCCCCCCCCcChH-HHHHHHHHHHHHHhCCCCcce-Eee
Q 028817 143 VNGVLLTGGWAKKGLYFQ-IVEKIFKHEAIYERKKQSLVH-GIT 184 (203)
Q Consensus 143 VDGVLLTGG~DVdP~yY~-~~~~I~~~AL~~n~~g~~PV~-Gic 184 (203)
+|||++.|+.-=-+.+-. +-+.+.+.+.+.. +|+.||. |++
T Consensus 35 v~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~-~~~~pvi~gv~ 77 (289)
T cd00951 35 AAALFAAGGTGEFFSLTPDEYAQVVRAAVEET-AGRVPVLAGAG 77 (289)
T ss_pred CCEEEECcCCcCcccCCHHHHHHHHHHHHHHh-CCCCCEEEecC
Confidence 688887776432233333 3345666666664 3555444 444
No 349
>PF00162 PGK: Phosphoglycerate kinase; InterPro: IPR001576 Phosphoglycerate kinase (2.7.2.3 from EC) (PGK) is an enzyme that catalyses the formation of ATP to ADP and vice versa. In the second step of the second phase in glycolysis, 1,3-diphosphoglycerate is converted to 3-phosphoglycerate, forming one molecule of ATP. If the reverse were to occur, one molecule of ADP would be formed. This reaction is essential in most cells for the generation of ATP in aerobes, for fermentation in anaerobes and for carbon fixation in plants. PGK is found in all living organisms and its sequence has been highly conserved throughout evolution. The enzyme exists as a monomer containing two nearly equal-sized domains that correspond to the N- and C-termini of the protein (the last 15 C-terminal residues loop back into the N-terminal domain). 3-phosphoglycerate (3-PG) binds to the N-terminal, while the nucleotide substrates, MgATP or MgADP, bind to the C-terminal domain of the enzyme. This extended two-domain structure is associated with large-scale 'hinge-bending' conformational changes, similar to those found in hexokinase []. At the core of each domain is a 6-stranded parallel beta-sheet surrounded by alpha helices. Domain 1 has a parallel beta-sheet of six strands with an order of 342156, while domain 2 has a parallel beta-sheet of six strands with an order of 321456. Analysis of the reversible unfolding of yeast phosphoglycerate kinase leads to the conclusion that the two lobes are capable of folding independently, consistent with the presence of intermediates on the folding pathway with a single domain folded []. Phosphoglycerate kinase (PGK) deficiency is associated with haemolytic anaemia and mental disorders in man []. This group represents a phosphoglycerate kinase.; GO: 0004618 phosphoglycerate kinase activity, 0006096 glycolysis; PDB: 1PHP_A 1V6S_A 2IE8_A 1ZMR_A 16PK_A 13PK_B 2P9Q_A 2P9T_A 2PAA_B 3OZA_A ....
Probab=24.17 E-value=1.5e+02 Score=28.18 Aligned_cols=81 Identities=12% Similarity=0.090 Sum_probs=51.2
Q ss_pred hhHHHHHHH---HHCCCeEEEeecCCC-----HHHHHHHHHhcCEEEeCCCC----------C-----CCCcChHHHHHH
Q 028817 109 IAASYVKFV---ESAGARVIPLIYNEP-----EEILFEKLKLVNGVLLTGGW----------A-----KKGLYFQIVEKI 165 (203)
Q Consensus 109 I~~sYVkaV---e~AGA~PV~LP~~~~-----~e~l~~~Ld~VDGVLLTGG~----------D-----VdP~yY~~~~~I 165 (203)
+.++=++++ .....+|.+.-.... ...++.+++++|.|++.||- + ++..+.+.++.|
T Consensus 172 lmekEl~~L~~~~~~~~rP~vaIlGGaKvsdKi~vl~~Ll~kvD~liigG~ma~tFl~A~G~~iG~s~~e~~~i~~a~~l 251 (384)
T PF00162_consen 172 LMEKELEALSKVLENPKRPFVAILGGAKVSDKIGVLENLLDKVDKLIIGGGMANTFLKAQGYEIGKSLVEEDLIEEAKEL 251 (384)
T ss_dssp HHHHHHHHHHHHHHS-SSSEEEEEESS-HHHHHHHHHHHTTTSSEEEEETTHHHHHHHHTTHBBTTSSCHGGGHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCeEEEEeCCchHhHHHHHHHHHHHHHHHeeChhHHHHHHHHcCCcccccchhhhhHHHHHHH
Confidence 334444544 445677765544322 34778899999999999982 1 355666788999
Q ss_pred HHHHHHHHhCCCCcceEeeCCccc
Q 028817 166 FKHEAIYERKKQSLVHGITGDVVQ 189 (203)
Q Consensus 166 ~~~AL~~n~~g~~PV~Gic~~~~~ 189 (203)
++++.+.+.+=-.|+=-+|.....
T Consensus 252 l~~~~~~g~~i~lPvD~~v~~~~~ 275 (384)
T PF00162_consen 252 LEKAKDRGVKIVLPVDFVVADEFS 275 (384)
T ss_dssp HHHHHHTT-EEE--SEEEEESSSS
T ss_pred HHHHHhcCceEEEEEEEeehhccc
Confidence 999877553333388888876643
No 350
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.92 E-value=1.6e+02 Score=21.72 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=31.5
Q ss_pred hHHHHHHHHHCCCeEEEe--ecCCCH--HHHHHHHHhcCEEEeCCCC
Q 028817 110 AASYVKFVESAGARVIPL--IYNEPE--EILFEKLKLVNGVLLTGGW 152 (203)
Q Consensus 110 ~~sYVkaVe~AGA~PV~L--P~~~~~--e~l~~~Ld~VDGVLLTGG~ 152 (203)
...|-+.+++.|+..+.. .-.... ..+++.+...|-|++.=+.
T Consensus 12 ~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~ 58 (97)
T PF10087_consen 12 ERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDY 58 (97)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCC
Confidence 367778899999999988 222222 3478888888999987654
No 351
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=23.83 E-value=4.1e+02 Score=23.56 Aligned_cols=102 Identities=18% Similarity=0.174 Sum_probs=51.1
Q ss_pred CCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHH---HHCCCeEEEeecCCCHHHHHHHHHhcCE------EEeCCCC
Q 028817 82 NRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFV---ESAGARVIPLIYNEPEEILFEKLKLVNG------VLLTGGW 152 (203)
Q Consensus 82 ~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaV---e~AGA~PV~LP~~~~~e~l~~~Ld~VDG------VLLTGG~ 152 (203)
.+|.|+|-.....+ ..+.|-.+.|.+-+ .+.|..+|++-...+.+..+++.+.+.. +-+.|--
T Consensus 179 ~~~~i~i~pga~~~--------~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~~~~~~~~~~~~~l~g~~ 250 (348)
T PRK10916 179 ERPIIGFCPGAEFG--------PAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGET 250 (348)
T ss_pred CCCEEEEeCCCCCc--------cccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHHhcccccccceeeccCCC
Confidence 56888886643211 13445555555544 3347777776533344455666655421 3344322
Q ss_pred CCCC---------cChHHHHHHHHHHHHHHhCCCCcceEeeCCccccccccccc
Q 028817 153 AKKG---------LYFQIVEKIFKHEAIYERKKQSLVHGITGDVVQKDYYTWPY 197 (203)
Q Consensus 153 DVdP---------~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~~~~~~~~~~~ 197 (203)
++.- .+-....-.++.|-..+ -|+.|++|-+--+ .++||
T Consensus 251 sL~el~ali~~a~l~I~nDTGp~HlAaA~g----~P~valfGpt~p~--~~~P~ 298 (348)
T PRK10916 251 QLEQAVILIAACKAIVTNDSGLMHVAAALN----RPLVALYGPSSPD--FTPPL 298 (348)
T ss_pred CHHHHHHHHHhCCEEEecCChHHHHHHHhC----CCEEEEECCCCcc--ccCCC
Confidence 2110 00011233444444443 6999999977554 33454
No 352
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=23.82 E-value=2.8e+02 Score=22.76 Aligned_cols=36 Identities=6% Similarity=-0.013 Sum_probs=17.3
Q ss_pred HHHHHC-CCeEEEeecCCCHH----HHHHHH-HhcCEEEeCC
Q 028817 115 KFVESA-GARVIPLIYNEPEE----ILFEKL-KLVNGVLLTG 150 (203)
Q Consensus 115 kaVe~A-GA~PV~LP~~~~~e----~l~~~L-d~VDGVLLTG 150 (203)
+..++. |-..++.....+.+ .++.++ ..+|||++.+
T Consensus 23 ~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~ 64 (270)
T cd06308 23 REASNYPDVELIIADAADDNSKQVADIENFIRQGVDLLIISP 64 (270)
T ss_pred HHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCCCEEEEec
Confidence 344444 55555554432332 222222 2678888765
No 353
>PRK12397 propionate kinase; Reviewed
Probab=23.56 E-value=49 Score=31.71 Aligned_cols=14 Identities=21% Similarity=0.520 Sum_probs=11.9
Q ss_pred HHhcCEEEeCCCCC
Q 028817 140 LKLVNGVLLTGGWA 153 (203)
Q Consensus 140 Ld~VDGVLLTGG~D 153 (203)
+..+|+|+||||--
T Consensus 319 lggvDaiVFTGGIG 332 (404)
T PRK12397 319 MGGLDALVFTGGIG 332 (404)
T ss_pred hCCCCEEEECCchh
Confidence 57799999999953
No 354
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=23.41 E-value=1.7e+02 Score=25.56 Aligned_cols=37 Identities=14% Similarity=0.112 Sum_probs=28.7
Q ss_pred hhHHHHH-HHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEe
Q 028817 109 IAASYVK-FVESAGARVIPLIYNEPEEILFEKLKLVNGVLL 148 (203)
Q Consensus 109 I~~sYVk-aVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLL 148 (203)
+...++. .+...||.|++-- ++++++++++.+|++++
T Consensus 23 vt~~~~An~~la~g~sp~m~~---~~~e~~~~~~~~~alvi 60 (263)
T PRK09355 23 VVMNFTANGLLALGASPAMAH---APEEAEEMAKIAGALVI 60 (263)
T ss_pred chhhhHHHHHHHhCCCcccCC---CHHHHHHHHHhcCceEE
Confidence 4444555 4677899999953 66788899999999999
No 355
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=23.35 E-value=2.6e+02 Score=24.90 Aligned_cols=42 Identities=12% Similarity=0.074 Sum_probs=22.2
Q ss_pred cCEEEeCCCCCCCCcChHHH-HHHHHHHHHHHhCCCCcc-eEeeC
Q 028817 143 VNGVLLTGGWAKKGLYFQIV-EKIFKHEAIYERKKQSLV-HGITG 185 (203)
Q Consensus 143 VDGVLLTGG~DVdP~yY~~~-~~I~~~AL~~n~~g~~PV-~Gic~ 185 (203)
+|||++.|..-=-+.+-.++ +.+.+.+.+.. +|+.|| .|+++
T Consensus 42 v~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~-~~~~pvi~gv~~ 85 (303)
T PRK03620 42 AAALFAAGGTGEFFSLTPDEYSQVVRAAVETT-AGRVPVIAGAGG 85 (303)
T ss_pred CCEEEECcCCcCcccCCHHHHHHHHHHHHHHh-CCCCcEEEecCC
Confidence 67777777654333333333 45556666654 344444 45543
No 356
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=23.31 E-value=1.3e+02 Score=24.73 Aligned_cols=43 Identities=14% Similarity=-0.031 Sum_probs=31.1
Q ss_pred HHHHHHHHHCCCeEEEeecCCC-----H--HHHHHHHHhcCEEEeCCCCC
Q 028817 111 ASYVKFVESAGARVIPLIYNEP-----E--EILFEKLKLVNGVLLTGGWA 153 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~-----~--e~l~~~Ld~VDGVLLTGG~D 153 (203)
..+.+.+++.|+.++.+|..+- . ......++..|+|+||-...
T Consensus 14 ~~l~~~l~~~G~~v~~~p~~~~~~~~~~~~~~~~~~~~~~d~iiftS~~a 63 (249)
T PRK05928 14 EELVELLRELGFVALHFPLIEIEPGRQLPQLAAQLAALGADWVIFTSKNA 63 (249)
T ss_pred HHHHHHHHHcCCCEEEeccEEEecCCCcChHHHHhhCCCCCEEEEECHHH
Confidence 5677889999999999987431 1 12234577899999998643
No 357
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=23.12 E-value=1.8e+02 Score=26.36 Aligned_cols=30 Identities=23% Similarity=0.389 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCcceEeeCCcc
Q 028817 159 FQIVEKIFKHEAIYERKKQSLVHGITGDVV 188 (203)
Q Consensus 159 Y~~~~~I~~~AL~~n~~g~~PV~Gic~~~~ 188 (203)
++++..+++.+.+.+..+...|.||=||++
T Consensus 68 ~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv 97 (345)
T cd08195 68 LETLEKLYDALLEAGLDRKSLIIALGGGVV 97 (345)
T ss_pred HHHHHHHHHHHHHcCCCCCCeEEEECChHH
Confidence 455555555555555444445555555544
No 358
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=23.09 E-value=1.3e+02 Score=24.87 Aligned_cols=95 Identities=18% Similarity=0.137 Sum_probs=46.0
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHH---CCCeEEEeecCCC--HHHHHHHHHhcC--EEEeCCCCC
Q 028817 81 NNRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVES---AGARVIPLIYNEP--EEILFEKLKLVN--GVLLTGGWA 153 (203)
Q Consensus 81 ~~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~---AGA~PV~LP~~~~--~e~l~~~Ld~VD--GVLLTGG~D 153 (203)
..++.|+|...... ..+.|-.+.|.+-+++ .|..++++-...+ .+.++++.+.++ .+.++|-.+
T Consensus 103 ~~~~~i~i~~~a~~---------~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (247)
T PF01075_consen 103 KDKPYIGINPGASW---------PSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTS 173 (247)
T ss_dssp TTSSEEEEE---SS---------GGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-
T ss_pred ccCCeEEEeecCCC---------ccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHHhcccceEeecCCCC
Confidence 46789999866543 1344555666555544 4644444443222 234455666665 678887655
Q ss_pred CCC--------cCh-HHHHHHHHHHHHHHhCCCCcceEeeCCcc
Q 028817 154 KKG--------LYF-QIVEKIFKHEAIYERKKQSLVHGITGDVV 188 (203)
Q Consensus 154 VdP--------~yY-~~~~~I~~~AL~~n~~g~~PV~Gic~~~~ 188 (203)
+.- ..+ ....-+++.|-..+ -|++|+.|.+-
T Consensus 174 l~e~~ali~~a~~~I~~Dtg~~HlA~a~~----~p~v~lfg~t~ 213 (247)
T PF01075_consen 174 LRELAALISRADLVIGNDTGPMHLAAALG----TPTVALFGPTN 213 (247)
T ss_dssp HHHHHHHHHTSSEEEEESSHHHHHHHHTT------EEEEESSS-
T ss_pred HHHHHHHHhcCCEEEecCChHHHHHHHHh----CCEEEEecCCC
Confidence 321 111 11234455554444 69999999874
No 359
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=22.97 E-value=5e+02 Score=22.46 Aligned_cols=61 Identities=5% Similarity=-0.001 Sum_probs=31.1
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHH----HHHHH-HhcCEEEeCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEI----LFEKL-KLVNGVLLTGG 151 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~----l~~~L-d~VDGVLLTGG 151 (203)
.-.||+....... ..+..+.+..-+.+++.|-..++.....+.+. ++.++ ..+|||++.+.
T Consensus 59 ~~~Igvi~~~~~~--------~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 124 (343)
T PRK10727 59 TETVGLVVGDVSD--------PFFGAMVKAVEQVAYHTGNFLLIGNGYHNEQKERQAIEQLIRHRCAALVVHAK 124 (343)
T ss_pred CCeEEEEeCCCCc--------chHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 3478976542211 11222334444456667877666554333322 22222 36899998764
No 360
>PRK07157 acetate kinase; Provisional
Probab=22.83 E-value=52 Score=31.52 Aligned_cols=16 Identities=19% Similarity=0.499 Sum_probs=12.4
Q ss_pred HHHH-hcCEEEeCCCCC
Q 028817 138 EKLK-LVNGVLLTGGWA 153 (203)
Q Consensus 138 ~~Ld-~VDGVLLTGG~D 153 (203)
..|. .+|+|+||||--
T Consensus 315 a~L~G~vDaiVFTgGIG 331 (400)
T PRK07157 315 NKIGKKIDAIVFTAGVG 331 (400)
T ss_pred HHhCCCCCEEEECCccc
Confidence 3456 599999999953
No 361
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=22.74 E-value=71 Score=24.11 Aligned_cols=32 Identities=22% Similarity=0.165 Sum_probs=21.6
Q ss_pred hcCEEEeCCCCCCCCcChHHHHHHHHHHHHHH
Q 028817 142 LVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYE 173 (203)
Q Consensus 142 ~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n 173 (203)
.+.+|.|+||...-+..++....+++.+.+.+
T Consensus 52 ~~~~i~l~GGEPll~~~~~~l~~i~~~~k~~~ 83 (139)
T PF13353_consen 52 GIKGIVLTGGEPLLHENYDELLEILKYIKEKF 83 (139)
T ss_dssp CCCEEEEECSTGGGHHSHHHHHHHHHHHHHTT
T ss_pred CceEEEEcCCCeeeeccHhHHHHHHHHHHHhC
Confidence 45899999988333233677777777766655
No 362
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.71 E-value=4.2e+02 Score=21.48 Aligned_cols=39 Identities=15% Similarity=0.179 Sum_probs=25.2
Q ss_pred HHHHHCCCeEEEeecCC-CHHHHHHHHH-------hcCEEEeCCCCC
Q 028817 115 KFVESAGARVIPLIYNE-PEEILFEKLK-------LVNGVLLTGGWA 153 (203)
Q Consensus 115 kaVe~AGA~PV~LP~~~-~~e~l~~~Ld-------~VDGVLLTGG~D 153 (203)
+.++..|.....+..+. +.+.+++.++ .+|+|+..-|..
T Consensus 49 ~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 95 (239)
T PRK07666 49 EEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGSIDILINNAGIS 95 (239)
T ss_pred HHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcCCccEEEEcCccc
Confidence 34455566666666543 4556666665 689999887753
No 363
>PRK05568 flavodoxin; Provisional
Probab=22.70 E-value=3.5e+02 Score=20.56 Aligned_cols=78 Identities=18% Similarity=0.092 Sum_probs=44.8
Q ss_pred CchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcC-hHHHHHHHHHHHHHHhCCCC-cceE
Q 028817 105 NASYIAASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLY-FQIVEKIFKHEAIYERKKQS-LVHG 182 (203)
Q Consensus 105 ~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~y-Y~~~~~I~~~AL~~n~~g~~-PV~G 182 (203)
+...+.+...+.+++.|..+.++....... .-+...|+|+|--.---.... -+..+.+++..... .++.. =++|
T Consensus 14 nT~~~a~~i~~~~~~~g~~v~~~~~~~~~~---~~~~~~d~iilgsp~y~~~~~~~~~~~~f~~~~~~~-~~~k~~~~f~ 89 (142)
T PRK05568 14 NTEAMANLIAEGAKENGAEVKLLNVSEASV---DDVKGADVVALGSPAMGDEVLEEGEMEPFVESISSL-VKGKKLVLFG 89 (142)
T ss_pred hHHHHHHHHHHHHHHCCCeEEEEECCCCCH---HHHHhCCEEEEECCccCcccccchhHHHHHHHhhhh-hCCCEEEEEE
Confidence 345677777778888888777776543221 136788998885432100000 02455566554332 24444 7888
Q ss_pred eeCC
Q 028817 183 ITGD 186 (203)
Q Consensus 183 ic~~ 186 (203)
.||.
T Consensus 90 t~G~ 93 (142)
T PRK05568 90 SYGW 93 (142)
T ss_pred ccCC
Confidence 8875
No 364
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=22.67 E-value=51 Score=31.49 Aligned_cols=13 Identities=15% Similarity=0.422 Sum_probs=11.1
Q ss_pred HhcCEEEeCCCCC
Q 028817 141 KLVNGVLLTGGWA 153 (203)
Q Consensus 141 d~VDGVLLTGG~D 153 (203)
..+|+|+||||--
T Consensus 322 g~vDaiVfTGGIg 334 (402)
T PRK00180 322 GRLDAIVFTAGIG 334 (402)
T ss_pred CCCCEEEEcCccc
Confidence 5699999999954
No 365
>TIGR03577 EF_0830 conserved hypothetical protein EF_0830/AHA_3911. Members of this family of small (about 120 amino acid), relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=22.64 E-value=1.4e+02 Score=23.85 Aligned_cols=39 Identities=28% Similarity=0.308 Sum_probs=30.2
Q ss_pred HHHHHHHCCCeEEEeecCCCHHHHHHHHHhcC---EEEeCCC
Q 028817 113 YVKFVESAGARVIPLIYNEPEEILFEKLKLVN---GVLLTGG 151 (203)
Q Consensus 113 YVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VD---GVLLTGG 151 (203)
..+.||+||++.++||-...+..+-++++.=+ |+-|.|.
T Consensus 15 Va~Gve~AGg~aiVipG~~ADmklGdVM~~e~Ad~GiSFCGS 56 (115)
T TIGR03577 15 VAKGVEAAGGRAVVIPGMAADMKLGDVMKQENADLGISFCGS 56 (115)
T ss_pred hhhhHHhcCCeEEEecCccccchHHHHHhhhcCccceEEecC
Confidence 34679999999999998766667777766544 7888884
No 366
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=22.56 E-value=3.8e+02 Score=20.96 Aligned_cols=80 Identities=13% Similarity=0.096 Sum_probs=47.6
Q ss_pred CEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHH-HHCCCeEEEeecCCC---HH-HHHHHHHhcCEEEeCCCCCC-CCc
Q 028817 84 PVIGILSHPGDGASGRLNNSKNASYIAASYVKFV-ESAGARVIPLIYNEP---EE-ILFEKLKLVNGVLLTGGWAK-KGL 157 (203)
Q Consensus 84 PVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaV-e~AGA~PV~LP~~~~---~e-~l~~~Ld~VDGVLLTGG~DV-dP~ 157 (203)
.+|+|++|+.. -..+|+.+..++.. .+.|-..- +=.... .. .-++-++..|.|++.|...+ +-.
T Consensus 4 kivaVtacp~G---------iAht~lAAeaL~kAA~~~G~~i~-VE~qg~~g~~~~lt~~~i~~Ad~VIia~d~~~~~~~ 73 (114)
T PRK10427 4 YLVAVTACVSG---------VAHTYMAAERLEKLCQLEKWGVK-IETQGALGTENRLTDEDIRRADVVLLITDIELAGAE 73 (114)
T ss_pred eEEEEeeCCCc---------HHHHHHHHHHHHHHHHHCCCeEE-EEecCCcCcCCCCCHHHHHhCCEEEEEecCCCCchh
Confidence 48999998753 25667777777754 44565444 221111 01 11235889999999998773 455
Q ss_pred ChH--------------HHHHHHHHHHHHH
Q 028817 158 YFQ--------------IVEKIFKHEAIYE 173 (203)
Q Consensus 158 yY~--------------~~~~I~~~AL~~n 173 (203)
+|. ....+++.+.+.-
T Consensus 74 rF~gk~v~~~s~~~ai~d~~~vl~~a~~~~ 103 (114)
T PRK10427 74 RFEHCRYVQCSIYAFLREPQRVMSAVRKVL 103 (114)
T ss_pred hhCCCeEEEecHHHHHHHHHHHHHHHHHHH
Confidence 552 2456666666654
No 367
>PRK07109 short chain dehydrogenase; Provisional
Probab=22.53 E-value=3.3e+02 Score=24.21 Aligned_cols=39 Identities=8% Similarity=0.085 Sum_probs=24.1
Q ss_pred HHHHHHCCCeEEEeecCC-CHHHHHHHHH-------hcCEEEeCCCC
Q 028817 114 VKFVESAGARVIPLIYNE-PEEILFEKLK-------LVNGVLLTGGW 152 (203)
Q Consensus 114 VkaVe~AGA~PV~LP~~~-~~e~l~~~Ld-------~VDGVLLTGG~ 152 (203)
.+.++..|+....+..+. +.+.+++.++ .+|.++..-|.
T Consensus 49 ~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 49 AAEIRAAGGEALAVVADVADAEAVQAAADRAEEELGPIDTWVNNAMV 95 (334)
T ss_pred HHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCCCCCEEEECCCc
Confidence 344555677766666543 4455555544 58998887775
No 368
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=22.42 E-value=1.9e+02 Score=25.65 Aligned_cols=42 Identities=12% Similarity=0.089 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHCCCeEEEeecCC-CHHHHHHHHHhcCEEEeCC
Q 028817 109 IAASYVKFVESAGARVIPLIYNE-PEEILFEKLKLVNGVLLTG 150 (203)
Q Consensus 109 I~~sYVkaVe~AGA~PV~LP~~~-~~e~l~~~Ld~VDGVLLTG 150 (203)
-...+++.+.+....||++=..- +.+.+.++++.+||+++--
T Consensus 187 ~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~~ADGviVGS 229 (258)
T PRK13111 187 DLAELVARLKAHTDLPVAVGFGISTPEQAAAIAAVADGVIVGS 229 (258)
T ss_pred cHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHHhCCEEEEcH
Confidence 45678999988878898887654 6789999999999987643
No 369
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=22.15 E-value=2.5e+02 Score=25.00 Aligned_cols=44 Identities=9% Similarity=-0.009 Sum_probs=25.5
Q ss_pred cCEEEeCCC----CCCCCcChHHH-HHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 143 VNGVLLTGG----WAKKGLYFQIV-EKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 143 VDGVLLTGG----~DVdP~yY~~~-~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
+|+|.+.-. .-+.|..|++- .-.+++.++.-... .+++-+||++
T Consensus 194 ad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~~~-~~ilH~cG~~ 242 (339)
T PRK06252 194 ADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVKGL-PTILHICGDL 242 (339)
T ss_pred CCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhccC-CcEEEECCCc
Confidence 667655532 23788888762 22233333322222 7899999987
No 370
>cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI),
Probab=22.07 E-value=1.6e+02 Score=26.09 Aligned_cols=37 Identities=24% Similarity=0.325 Sum_probs=29.7
Q ss_pred HHHHHHHHHCCCeEEEeecCCC--------HHHHHHHHHh--cCEEE
Q 028817 111 ASYVKFVESAGARVIPLIYNEP--------EEILFEKLKL--VNGVL 147 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~--------~e~l~~~Ld~--VDGVL 147 (203)
..+|+.+.++|-.+.+.-.+.. .+++..++++ ||||+
T Consensus 246 ~~~v~~a~~~Gl~v~~WTvn~~~~~~~~~~~~~~~~l~~~~GVdgIi 292 (296)
T cd08559 246 TDLVKDAHKAGLLVHPYTFRNENLFLAPDFKQDMDALYNAAGVDGVF 292 (296)
T ss_pred hHHHHHHHHcCCEEEEEEecCcccccccccccCHHHHHHHhCCCEEE
Confidence 7888999999999888877642 6677888885 99986
No 371
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=21.96 E-value=2.4e+02 Score=24.45 Aligned_cols=94 Identities=7% Similarity=0.061 Sum_probs=47.9
Q ss_pred CCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHH---HHHHCCCeEEEeecCC-CHHHHHHHHHhcCEEEeCCCCCCCC-
Q 028817 82 NRPVIGILSHPGDGASGRLNNSKNASYIAASYVK---FVESAGARVIPLIYNE-PEEILFEKLKLVNGVLLTGGWAKKG- 156 (203)
Q Consensus 82 ~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVk---aVe~AGA~PV~LP~~~-~~e~l~~~Ld~VDGVLLTGG~DVdP- 156 (203)
.+|.|++...... ..+.|-.+.|.+ .+.+.|..+|++--.. +.+..+++.+.+++..+.|-.++.-
T Consensus 178 ~~~~i~i~~gas~---------~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~~~~~~i~~~~~~~~l~g~~sL~el 248 (319)
T TIGR02193 178 PAPYAVLLHATSR---------DDKTWPEERWRELARLLLARGLQIVLPWGNDAEKQRAERIAEALPGAVVLPKMSLAEV 248 (319)
T ss_pred CCCEEEEEeCCCc---------ccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHhhCCCCeecCCCCHHHH
Confidence 4678887654322 123344444444 3444577777663222 2245666777766666665332100
Q ss_pred -------cCh-HHHHHHHHHHHHHHhCCCCcceEeeCCcc
Q 028817 157 -------LYF-QIVEKIFKHEAIYERKKQSLVHGITGDVV 188 (203)
Q Consensus 157 -------~yY-~~~~~I~~~AL~~n~~g~~PV~Gic~~~~ 188 (203)
.++ ....-.++.|-..+ -|+.|++|.+-
T Consensus 249 ~ali~~a~l~I~~DSgp~HlAaa~g----~P~i~lfg~t~ 284 (319)
T TIGR02193 249 AALLAGADAVVGVDTGLTHLAAALD----KPTVTLYGATD 284 (319)
T ss_pred HHHHHcCCEEEeCCChHHHHHHHcC----CCEEEEECCCC
Confidence 000 11233444444443 69999999873
No 372
>PLN03069 magnesiumprotoporphyrin-IX chelatase subunit H; Provisional
Probab=21.86 E-value=4.2e+02 Score=29.05 Aligned_cols=70 Identities=20% Similarity=0.222 Sum_probs=40.7
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCC--CHHHHHH-HHH------hcCEEE-eCC
Q 028817 81 NNRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNE--PEEILFE-KLK------LVNGVL-LTG 150 (203)
Q Consensus 81 ~~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~--~~e~l~~-~Ld------~VDGVL-LTG 150 (203)
..+|+|||+......- . .+. -.-..-++++|+.|..|+++-... ....+++ +++ .+|.|| ++|
T Consensus 264 ~~~p~Vgil~~r~~~~-----~-~~~-~~idalI~~LE~~G~~vipvf~~gl~~~~~~~~~~~~~~~~~~~vDaiIn~tg 336 (1220)
T PLN03069 264 KDAPVVGLVLQRSHIV-----T-GDD-GHYVAVVMELEARGAKVVPIFAGGLDFSGPVERFFYDPITKKPIVDSVVSLTG 336 (1220)
T ss_pred CCCCEEEEEechhhhh-----c-CCc-HHHHHHHHHHHHCCCeEEEEEecCccccchHHHHHHhhhcCCCCccEEEECCc
Confidence 3479999988754311 1 112 223566788899999888875432 1223333 332 489999 565
Q ss_pred CCCC-CCc
Q 028817 151 GWAK-KGL 157 (203)
Q Consensus 151 G~DV-dP~ 157 (203)
..-+ .|.
T Consensus 337 F~L~ggpa 344 (1220)
T PLN03069 337 FALVGGPA 344 (1220)
T ss_pred ccccCCcc
Confidence 4433 344
No 373
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=21.70 E-value=1.9e+02 Score=25.70 Aligned_cols=63 Identities=14% Similarity=-0.005 Sum_probs=39.9
Q ss_pred HHHHHHHHCCCeEEEeecCCCHHHHHHHHHhc-CEEEeCCCCCC-CCcChHHHHHHHHHHHHHHhCCC
Q 028817 112 SYVKFVESAGARVIPLIYNEPEEILFEKLKLV-NGVLLTGGWAK-KGLYFQIVEKIFKHEAIYERKKQ 177 (203)
Q Consensus 112 sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~V-DGVLLTGG~DV-dP~yY~~~~~I~~~AL~~n~~g~ 177 (203)
..++.+...|+..+-+-... ++.+..+.+ |.+.+-||-|. .--++++.+.|.+.+.+.-+.|.
T Consensus 244 ~~l~~~~~~g~d~~~~d~~~---dl~~~~~~~g~~~~i~Gnidp~~~l~~gt~eeI~~~v~~~l~~g~ 308 (339)
T PRK06252 244 SILEEMADCGFDGISIDEKV---DVKTAKENVGDRAALIGNVSTSFTLLNGTPEKVKAEAKKCLEDGV 308 (339)
T ss_pred HHHHHHHhcCCCeeccCCCC---CHHHHHHHhCCCeEEEeccCcHHHhcCCCHHHHHHHHHHHHHcCC
Confidence 34566666777776554332 455556666 66888899875 44555777777777776665553
No 374
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.60 E-value=3.5e+02 Score=22.11 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHCCCeEEEeecCCCHH----HHHHHH-HhcCEEEeCC
Q 028817 109 IAASYVKFVESAGARVIPLIYNEPEE----ILFEKL-KLVNGVLLTG 150 (203)
Q Consensus 109 I~~sYVkaVe~AGA~PV~LP~~~~~e----~l~~~L-d~VDGVLLTG 150 (203)
+.....+..++.|...+++....+.+ .+..++ +.+||+++.+
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~ 63 (277)
T cd06319 17 MGRGVKSKAKALGYDAVELSAENSAKKELENLRTAIDKGVSGIIISP 63 (277)
T ss_pred HHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcC
Confidence 34444445666787777765443322 222322 5778888755
No 375
>PRK06114 short chain dehydrogenase; Provisional
Probab=21.45 E-value=4.5e+02 Score=21.68 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=24.1
Q ss_pred HHHHHHCCCeEEEeecCC-CHHHHHHHHHh-------cCEEEeCCCC
Q 028817 114 VKFVESAGARVIPLIYNE-PEEILFEKLKL-------VNGVLLTGGW 152 (203)
Q Consensus 114 VkaVe~AGA~PV~LP~~~-~~e~l~~~Ld~-------VDGVLLTGG~ 152 (203)
.+.++..|..+..+..+. +++.+++.++. +|+|+...|.
T Consensus 50 ~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~id~li~~ag~ 96 (254)
T PRK06114 50 AEHIEAAGRRAIQIAADVTSKADLRAAVARTEAELGALTLAVNAAGI 96 (254)
T ss_pred HHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 344555566666666543 44555555554 6999998885
No 376
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=21.25 E-value=57 Score=31.24 Aligned_cols=15 Identities=27% Similarity=0.625 Sum_probs=12.1
Q ss_pred HHH-hcCEEEeCCCCC
Q 028817 139 KLK-LVNGVLLTGGWA 153 (203)
Q Consensus 139 ~Ld-~VDGVLLTGG~D 153 (203)
.|. .+|+|+||||--
T Consensus 323 ~L~G~vDaiVFTGGIG 338 (404)
T TIGR00016 323 SLEGNLDAIVFTGGIG 338 (404)
T ss_pred HhCCCCCEEEEcCccc
Confidence 456 599999999964
No 377
>PLN02591 tryptophan synthase
Probab=21.14 E-value=2e+02 Score=25.45 Aligned_cols=39 Identities=10% Similarity=0.150 Sum_probs=32.5
Q ss_pred hHHHHHHHHHCCCeEEEeecCC-CHHHHHHHHHh-cCEEEe
Q 028817 110 AASYVKFVESAGARVIPLIYNE-PEEILFEKLKL-VNGVLL 148 (203)
Q Consensus 110 ~~sYVkaVe~AGA~PV~LP~~~-~~e~l~~~Ld~-VDGVLL 148 (203)
...+++.+.+.-..||.+=..- +.+.++++++. +||+++
T Consensus 177 ~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIV 217 (250)
T PLN02591 177 VESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWGADGVIV 217 (250)
T ss_pred HHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCCEEEE
Confidence 4678888988888899987754 48899999999 999876
No 378
>PRK01355 azoreductase; Reviewed
Probab=21.10 E-value=4.8e+02 Score=21.56 Aligned_cols=77 Identities=18% Similarity=0.175 Sum_probs=45.0
Q ss_pred CEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHC--CCeEEEeecC--------------------CCHHHHHHHHH
Q 028817 84 PVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESA--GARVIPLIYN--------------------EPEEILFEKLK 141 (203)
Q Consensus 84 PVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~A--GA~PV~LP~~--------------------~~~e~l~~~Ld 141 (203)
.|+.|.++++... ......+.+.+++.+++. |..+-.+-.. .+.+.+.+.+.
T Consensus 3 kIliI~gSpr~~~------~s~s~~l~~~~~~~~~~~~~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 76 (199)
T PRK01355 3 KVLVIKGSMVAKE------KSFSSALTDKFVEEYKKVNPNDEIIILDLNETKVGSVTLTSENFKTFFKEEVSDKYINQLK 76 (199)
T ss_pred eEEEEECCCCCCC------CcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcccCCHHHHHhhcCchhHHHHHHHHH
Confidence 4777888886211 113345778888888773 4444322110 11133556777
Q ss_pred hcCEEEeCCCCCCCCcChHH----HHHHHHHHHH
Q 028817 142 LVNGVLLTGGWAKKGLYFQI----VEKIFKHEAI 171 (203)
Q Consensus 142 ~VDGVLLTGG~DVdP~yY~~----~~~I~~~AL~ 171 (203)
..|+||| +.|.|+.. -|..++++..
T Consensus 77 ~AD~iV~-----~sP~y~~~ipa~LK~~iDrv~~ 105 (199)
T PRK01355 77 SVDKVVI-----SCPMTNFNVPATLKNYLDHIAV 105 (199)
T ss_pred hCCEEEE-----EcCccccCChHHHHHHHHHHHh
Confidence 7899999 67888864 4555555443
No 379
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=20.89 E-value=5.4e+02 Score=22.16 Aligned_cols=38 Identities=11% Similarity=0.117 Sum_probs=27.6
Q ss_pred HHHHHHHHHCCCeEEE-eecCCCHHHHHHHHH-hcCEEEe
Q 028817 111 ASYVKFVESAGARVIP-LIYNEPEEILFEKLK-LVNGVLL 148 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~-LP~~~~~e~l~~~Ld-~VDGVLL 148 (203)
..+++.+.+.|..+++ +.+..+.++++.+++ ..|-|++
T Consensus 119 ~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~ 158 (242)
T cd04724 119 EEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYY 158 (242)
T ss_pred HHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEE
Confidence 4677788888877765 555556788899998 5565665
No 380
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=20.82 E-value=1.1e+02 Score=29.04 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=28.8
Q ss_pred HHHHH-hcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 137 FEKLK-LVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 137 ~~~Ld-~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
+++.+ .+|=++|-||. +|+|++.+-+ ..|.||+||=-||
T Consensus 94 r~~~~~gVdlIvfaGGD-------GTarDVa~av-----~~~vPvLGipaGv 133 (355)
T COG3199 94 RRMVERGVDLIVFAGGD-------GTARDVAEAV-----GADVPVLGIPAGV 133 (355)
T ss_pred HHHHhcCceEEEEeCCC-------ccHHHHHhhc-----cCCCceEeecccc
Confidence 34444 48889999986 5788887766 3345999998887
No 381
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=20.79 E-value=4.3e+02 Score=24.16 Aligned_cols=63 Identities=17% Similarity=0.167 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeC-----CCCCCCCcChHHHHHHHHHHHH
Q 028817 109 IAASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLT-----GGWAKKGLYFQIVEKIFKHEAI 171 (203)
Q Consensus 109 I~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLT-----GG~DVdP~yY~~~~~I~~~AL~ 171 (203)
....+++.+.++--.||++-..-+.+.+.++|+.+||++.- ||---+|---+.++.|.+.+..
T Consensus 192 ~d~~el~~a~~~~~~pvlvGSGv~~eN~~~~l~~adG~IvgT~lK~~G~~~n~VD~~Rv~~~v~~a~~ 259 (263)
T COG0434 192 PDLEELKLAKEAVDTPVLVGSGVNPENIEELLKIADGVIVGTSLKKGGVTWNPVDLERVRRFVEAARR 259 (263)
T ss_pred CCHHHHHHHHhccCCCEEEecCCCHHHHHHHHHHcCceEEEEEEccCCEecCccCHHHHHHHHHHHHH
Confidence 34556666666444888888777888999999999999874 3322233334567777777654
No 382
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=20.77 E-value=3.2e+02 Score=24.37 Aligned_cols=82 Identities=16% Similarity=0.163 Sum_probs=49.1
Q ss_pred hhHHHHHHHH-HCCCeEEEeecCCCHHHHHHHHHhcC----EEEe------CCCCCCCCcCh----HHHHHHHHHHHHHH
Q 028817 109 IAASYVKFVE-SAGARVIPLIYNEPEEILFEKLKLVN----GVLL------TGGWAKKGLYF----QIVEKIFKHEAIYE 173 (203)
Q Consensus 109 I~~sYVkaVe-~AGA~PV~LP~~~~~e~l~~~Ld~VD----GVLL------TGG~DVdP~yY----~~~~~I~~~AL~~n 173 (203)
+.+.|++++. ..|+-.|.+......+.++..++..+ ||.+ +|+.++.-.-. .-...+.++|.+++
T Consensus 101 Tv~~~a~a~~~~~g~D~vTvh~~~G~d~l~~~~~~~~~~~~~v~VlvlTSnp~~~~lq~~~~~~~~~~~~~V~~~a~~~~ 180 (261)
T TIGR02127 101 TASAYAKAWLGHLHADALTVSPYLGLDSLRPFLEYARANGAGIFVLVKTSNPGGADLQDLRVSDGRTVYEEVAELAGELN 180 (261)
T ss_pred HHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHHHHHhhcCCEEEEEEeCCCCCHHHHhhhhccCCCCHHHHHHHHHHHhc
Confidence 4578888876 68888888887777778888877654 3332 24444322111 11345555666666
Q ss_pred hC-CCC-cceEeeCCcccc
Q 028817 174 RK-KQS-LVHGITGDVVQK 190 (203)
Q Consensus 174 ~~-g~~-PV~Gic~~~~~~ 190 (203)
.+ +.. .+-.+||.|--+
T Consensus 181 ~~~~~~g~~GvV~gAT~p~ 199 (261)
T TIGR02127 181 ESPGDCSSVGAVVGATSPG 199 (261)
T ss_pred cccCcCCceEEEECCCCHH
Confidence 43 112 566789988643
No 383
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.75 E-value=4.5e+02 Score=21.10 Aligned_cols=38 Identities=13% Similarity=0.171 Sum_probs=23.0
Q ss_pred HHHHCCCeEEEeecCC-CHHHHHHHHH-------hcCEEEeCCCCC
Q 028817 116 FVESAGARVIPLIYNE-PEEILFEKLK-------LVNGVLLTGGWA 153 (203)
Q Consensus 116 aVe~AGA~PV~LP~~~-~~e~l~~~Ld-------~VDGVLLTGG~D 153 (203)
.+...+..+..+..+. +.+.+.+.++ .+|+|+...|..
T Consensus 49 ~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 94 (247)
T PRK05565 49 EIKEEGGDAIAVKADVSSEEDVENLVEQIVEKFGKIDILVNNAGIS 94 (247)
T ss_pred HHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCcC
Confidence 3444455555555443 4455555555 689999988864
No 384
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.72 E-value=5e+02 Score=21.61 Aligned_cols=65 Identities=5% Similarity=-0.215 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHCCCeEEEeecCCCHHHHHHHH-----HhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEe
Q 028817 109 IAASYVKFVESAGARVIPLIYNEPEEILFEKL-----KLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGI 183 (203)
Q Consensus 109 I~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~L-----d~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gi 183 (203)
+.+.--++.++.|-..++.....+.+.-.+.+ .++|||++.+.. .+....+++++.+. ..||.-+
T Consensus 17 ~~~gi~~~~~~~G~~~~~~~~~~d~~~~~~~i~~~~~~~vdgiii~~~~------~~~~~~~i~~~~~~----~iPvV~~ 86 (272)
T cd06313 17 GKQAADEAGKLLGVDVTWYGGALDAVKQVAAIENMASQGWDFIAVDPLG------IGTLTEAVQKAIAR----GIPVIDM 86 (272)
T ss_pred HHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCC------hHHhHHHHHHHHHC----CCcEEEe
Confidence 44444556677888888776554443333333 348999996531 12233445554443 2476655
No 385
>PF12813 XPG_I_2: XPG domain containing
Probab=20.63 E-value=2.1e+02 Score=25.15 Aligned_cols=45 Identities=11% Similarity=0.158 Sum_probs=36.6
Q ss_pred hhhHHHHHHHHHC---CCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCC
Q 028817 108 YIAASYVKFVESA---GARVIPLIYNEPEEILFEKLKLVNGVLLTGGWA 153 (203)
Q Consensus 108 yI~~sYVkaVe~A---GA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~D 153 (203)
++...+++++.+. |...+..+. +.+.+...+....++.+||+-+|
T Consensus 4 f~~~~~~e~L~~~~~~~~~~~~~~~-EAD~~~A~~A~~~~~~VLt~DSD 51 (246)
T PF12813_consen 4 FLVPAFIEALRESWRYGVPVVQCPG-EADRECAALARKWGCPVLTNDSD 51 (246)
T ss_pred chHHHHHHHHHHHhhcCCcEEEcCc-cchHHHHHHHHHcCCeEEccCCC
Confidence 4567788888887 888888886 45556778889999999999988
No 386
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=20.55 E-value=4.1e+02 Score=23.83 Aligned_cols=42 Identities=12% Similarity=0.041 Sum_probs=24.5
Q ss_pred cCEEEeCCCCCCCCcCh-HHHHHHHHHHHHHHhCCCCcceEeeC
Q 028817 143 VNGVLLTGGWAKKGLYF-QIVEKIFKHEAIYERKKQSLVHGITG 185 (203)
Q Consensus 143 VDGVLLTGG~DVdP~yY-~~~~~I~~~AL~~n~~g~~PV~Gic~ 185 (203)
||||++-|..-=-+.+- ++-+.+.+.+.+.. +|+.||..=+|
T Consensus 43 v~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~-~grvpvi~Gv~ 85 (309)
T cd00952 43 VDGILTMGTFGECATLTWEEKQAFVATVVETV-AGRVPVFVGAT 85 (309)
T ss_pred CCEEEECcccccchhCCHHHHHHHHHHHHHHh-CCCCCEEEEec
Confidence 68888888653223333 44456667777765 56665554444
No 387
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=20.24 E-value=6.7e+02 Score=23.19 Aligned_cols=41 Identities=17% Similarity=0.104 Sum_probs=32.7
Q ss_pred hHHHHHHHHHCCCeEEEeecCCCHHHHHHHHH-hcCEEEeCC
Q 028817 110 AASYVKFVESAGARVIPLIYNEPEEILFEKLK-LVNGVLLTG 150 (203)
Q Consensus 110 ~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld-~VDGVLLTG 150 (203)
.-..++++.+....||++-...+.+++....+ .+|||++.|
T Consensus 201 ~~~~i~~l~~~~~~PvivKgv~~~~dA~~a~~~G~d~I~vsn 242 (344)
T cd02922 201 TWDDIKWLRKHTKLPIVLKGVQTVEDAVLAAEYGVDGIVLSN 242 (344)
T ss_pred CHHHHHHHHHhcCCcEEEEcCCCHHHHHHHHHcCCCEEEEEC
Confidence 34668888887778999987777777777777 499999987
No 388
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=20.19 E-value=3.7e+02 Score=22.11 Aligned_cols=9 Identities=22% Similarity=0.460 Sum_probs=5.8
Q ss_pred hcCEEEeCC
Q 028817 142 LVNGVLLTG 150 (203)
Q Consensus 142 ~VDGVLLTG 150 (203)
.+|||++..
T Consensus 55 ~vDgiIi~~ 63 (271)
T cd06314 55 GVDGIAISP 63 (271)
T ss_pred CCCEEEEec
Confidence 567777654
No 389
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=20.16 E-value=4.8e+02 Score=21.66 Aligned_cols=38 Identities=8% Similarity=0.067 Sum_probs=23.3
Q ss_pred HHHHHCCCeEEEeecCC-CHHHHHHHHHh-------cCEEEeCCCC
Q 028817 115 KFVESAGARVIPLIYNE-PEEILFEKLKL-------VNGVLLTGGW 152 (203)
Q Consensus 115 kaVe~AGA~PV~LP~~~-~~e~l~~~Ld~-------VDGVLLTGG~ 152 (203)
+.+.+.|++...++.+. +.+.+++.++. +|+|+..=|.
T Consensus 52 ~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~ag~ 97 (265)
T PRK07097 52 AAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVGVIDILVNNAGI 97 (265)
T ss_pred HHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEECCCC
Confidence 34445566676666654 44555555543 7999877664
No 390
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=20.15 E-value=3.7e+02 Score=19.94 Aligned_cols=66 Identities=17% Similarity=0.214 Sum_probs=40.4
Q ss_pred EEEEcCCCCCCCCCCCCCCCCchhhhHHHHHH-HHHCCCeEEEeecCC--CHHHH-HHHHHhcCEEEeCCCCCCCCcCh
Q 028817 85 VIGILSHPGDGASGRLNNSKNASYIAASYVKF-VESAGARVIPLIYNE--PEEIL-FEKLKLVNGVLLTGGWAKKGLYF 159 (203)
Q Consensus 85 VIGIta~~~~~~~~~~~~~~~~syI~~sYVka-Ve~AGA~PV~LP~~~--~~e~l-~~~Ld~VDGVLLTGG~DVdP~yY 159 (203)
+++|++|... ...+++.+..++. .++.|-..-+---.. ....+ .+.++..|.|++.|...++-.+|
T Consensus 1 ~~~i~ac~~G---------~a~s~laa~~L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i~~Ad~vi~~~~~~~~~~rf 70 (96)
T cd05569 1 IVAVTACPTG---------IAHTYMAAEALEKAAKKLGWEIKVETQGSLGIENELTAEDIAEADAVILAADVPVDDERF 70 (96)
T ss_pred CEEEEECCCc---------hhHHHHHHHHHHHHHHHCCCeEEEEEecCcCccCcCCHHHHhhCCEEEEecCCCCchhhh
Confidence 4667766532 2556777777774 566776644332211 12222 25689999999999876655666
No 391
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.12 E-value=5.1e+02 Score=22.50 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=23.3
Q ss_pred HHHHHHCCCeEEEeecCC-CHHHHHHHHH------hcCEEEeCCCC
Q 028817 114 VKFVESAGARVIPLIYNE-PEEILFEKLK------LVNGVLLTGGW 152 (203)
Q Consensus 114 VkaVe~AGA~PV~LP~~~-~~e~l~~~Ld------~VDGVLLTGG~ 152 (203)
++.++..|+.++.+..+. +.+.++++++ ++|+|+-.-|.
T Consensus 54 ~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~~g~iD~li~nAG~ 99 (306)
T PRK07792 54 LDEIRAAGAKAVAVAGDISQRATADELVATAVGLGGLDIVVNNAGI 99 (306)
T ss_pred HHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 344555566666666543 3445555554 47998887664
No 392
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=20.09 E-value=83 Score=24.47 Aligned_cols=9 Identities=33% Similarity=1.014 Sum_probs=3.1
Q ss_pred EEEeCCCCC
Q 028817 145 GVLLTGGWA 153 (203)
Q Consensus 145 GVLLTGG~D 153 (203)
-|+|+||..
T Consensus 40 ~il~SGg~~ 48 (155)
T PF02698_consen 40 RILFSGGYG 48 (155)
T ss_dssp -EEEE--SS
T ss_pred eEEECCCCC
Confidence 455555543
No 393
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=20.06 E-value=1.2e+02 Score=26.01 Aligned_cols=56 Identities=25% Similarity=0.282 Sum_probs=35.0
Q ss_pred hHHHHHHHHHCCCeEEEeecCC--C---HHHHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHH
Q 028817 110 AASYVKFVESAGARVIPLIYNE--P---EEILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYE 173 (203)
Q Consensus 110 ~~sYVkaVe~AGA~PV~LP~~~--~---~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n 173 (203)
...+++.++.+|+.++.+|... . .+..-.-++..|.|+||=. +.++.+|++....+
T Consensus 13 ~~~~~~~l~~~G~~~~~~P~i~~~~~~~l~~~l~~l~~~d~vvfTS~--------~av~~~~~~l~~~~ 73 (248)
T COG1587 13 AEELAALLRKAGAEPLELPLIEIEPLPDLEVALEDLDSADWVVFTSP--------NAVRFFFEALKEQG 73 (248)
T ss_pred hHHHHHHHHhCCCcceeecceeeecchhHHHHHhccccCCEEEEECH--------HHHHHHHHHHHhhc
Confidence 4678888999999999999854 2 1222223333666777744 23455555555544
No 394
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=20.00 E-value=4.4e+02 Score=21.37 Aligned_cols=38 Identities=13% Similarity=0.116 Sum_probs=24.1
Q ss_pred HHHHHCCCeEEEeecCC-CHHHHHHHHH-------hcCEEEeCCCC
Q 028817 115 KFVESAGARVIPLIYNE-PEEILFEKLK-------LVNGVLLTGGW 152 (203)
Q Consensus 115 kaVe~AGA~PV~LP~~~-~~e~l~~~Ld-------~VDGVLLTGG~ 152 (203)
+.++..|+....+..+. +++.+++.++ .+|.|+...|.
T Consensus 47 ~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 92 (250)
T PRK08063 47 EEIEALGRKALAVKANVGDVEKIKEMFAQIDEEFGRLDVFVNNAAS 92 (250)
T ss_pred HHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 33455566666666543 4556666665 47999987775
Done!