Query 028817
Match_columns 203
No_of_seqs 132 out of 1073
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 04:12:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028817.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028817hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fij_A LIN1909 protein; 11172J 99.8 4.6E-19 1.6E-23 151.3 8.2 112 80-193 1-134 (254)
2 1l9x_A Gamma-glutamyl hydrolas 99.7 2.3E-16 7.8E-21 139.3 10.6 108 75-185 22-132 (315)
3 2ywd_A Glutamine amidotransfer 99.0 1.4E-10 4.8E-15 92.9 3.0 80 82-186 1-83 (191)
4 2abw_A PDX2 protein, glutamina 98.8 4.3E-09 1.5E-13 87.3 5.1 83 82-186 2-89 (227)
5 1wl8_A GMP synthase [glutamine 98.6 3.9E-08 1.3E-12 79.2 4.8 69 110-186 13-81 (189)
6 2a9v_A GMP synthase; structura 98.4 7.7E-08 2.6E-12 79.7 2.8 67 110-186 26-94 (212)
7 2ywj_A Glutamine amidotransfer 98.4 1.1E-07 3.8E-12 76.2 3.6 62 111-186 13-77 (186)
8 1q7r_A Predicted amidotransfer 98.4 1.2E-07 4E-12 78.6 3.8 80 81-186 21-103 (219)
9 2vpi_A GMP synthase; guanine m 98.3 4.3E-07 1.5E-11 75.9 3.3 67 111-186 38-105 (218)
10 1a9x_B Carbamoyl phosphate syn 98.2 1.2E-06 4.1E-11 79.9 5.0 68 111-186 202-270 (379)
11 2iss_D Glutamine amidotransfer 98.2 1.3E-06 4.6E-11 71.5 4.5 65 111-186 33-100 (208)
12 1ka9_H Imidazole glycerol phos 98.2 2.3E-07 7.9E-12 75.4 -0.3 68 111-186 16-84 (200)
13 2nv0_A Glutamine amidotransfer 98.1 2.2E-06 7.5E-11 69.1 4.8 65 111-186 14-81 (196)
14 1o1y_A Conserved hypothetical 98.1 1E-06 3.5E-11 74.3 2.7 69 112-185 28-101 (239)
15 1qdl_B Protein (anthranilate s 98.1 7.4E-06 2.5E-10 66.4 7.7 75 111-191 15-101 (195)
16 1jvn_A Glutamine, bifunctional 98.0 1.2E-06 4.1E-11 82.7 2.0 83 83-186 4-88 (555)
17 3d54_D Phosphoribosylformylgly 98.0 1.5E-06 5.2E-11 70.3 1.6 68 112-187 18-89 (213)
18 1i1q_B Anthranilate synthase c 98.0 1.9E-05 6.7E-10 63.7 8.2 70 109-184 12-83 (192)
19 1gpw_B Amidotransferase HISH; 98.0 4.9E-06 1.7E-10 67.3 4.3 66 111-186 14-86 (201)
20 2w7t_A CTP synthetase, putativ 98.0 1.8E-05 6.2E-10 68.2 7.8 90 84-186 9-105 (273)
21 4gud_A Imidazole glycerol phos 97.9 3.7E-05 1.3E-09 62.3 7.5 65 111-186 16-81 (211)
22 1gpm_A GMP synthetase, XMP ami 97.7 1.9E-05 6.5E-10 73.9 4.5 41 111-153 21-61 (525)
23 2ywb_A GMP synthase [glutamine 97.7 1.2E-05 4.2E-10 74.7 2.9 45 106-153 9-53 (503)
24 3m3p_A Glutamine amido transfe 97.7 0.00014 4.7E-09 62.3 8.7 71 111-186 18-91 (250)
25 2v4u_A CTP synthase 2; pyrimid 97.7 1.9E-05 6.5E-10 68.6 3.1 70 111-186 42-128 (289)
26 3uow_A GMP synthetase; structu 97.4 5.2E-05 1.8E-09 71.7 2.3 68 111-184 21-90 (556)
27 3l4e_A Uncharacterized peptida 97.3 0.00026 9.1E-09 58.9 5.8 96 83-187 27-123 (206)
28 3l7n_A Putative uncharacterize 97.3 9.9E-05 3.4E-09 61.6 2.7 71 111-186 15-93 (236)
29 1vco_A CTP synthetase; tetrame 97.3 0.0002 6.9E-09 68.2 5.0 89 81-186 298-393 (550)
30 3tqi_A GMP synthase [glutamine 97.1 3.4E-05 1.2E-09 72.3 -2.0 44 107-153 21-64 (527)
31 3r75_A Anthranilate/para-amino 97.1 0.00064 2.2E-08 65.6 6.4 66 110-184 459-528 (645)
32 1fy2_A Aspartyl dipeptidase; s 97.1 0.00062 2.1E-08 57.1 5.4 91 83-187 31-123 (229)
33 2vxo_A GMP synthase [glutamine 97.0 0.0002 6.9E-09 69.7 1.6 38 114-153 46-83 (697)
34 1s1m_A CTP synthase; CTP synth 96.9 0.00048 1.6E-08 65.6 3.1 69 110-186 305-381 (545)
35 3ugj_A Phosphoribosylformylgly 96.5 0.0035 1.2E-07 65.1 6.5 91 82-186 1046-1145(1303)
36 3nva_A CTP synthase; rossman f 95.7 0.015 5E-07 55.5 6.1 87 83-186 293-388 (535)
37 3en0_A Cyanophycinase; serine 94.4 0.036 1.2E-06 48.6 4.5 93 83-187 56-155 (291)
38 1oi4_A Hypothetical protein YH 93.6 0.18 6.1E-06 40.3 6.9 91 83-187 23-128 (193)
39 2vdj_A Homoserine O-succinyltr 93.5 0.037 1.3E-06 48.8 2.9 43 140-186 97-144 (301)
40 2h2w_A Homoserine O-succinyltr 93.2 0.043 1.5E-06 48.7 2.8 87 84-185 48-155 (312)
41 2rk3_A Protein DJ-1; parkinson 91.1 0.34 1.2E-05 38.5 5.5 74 112-187 21-109 (197)
42 4hcj_A THIJ/PFPI domain protei 90.3 0.12 4.2E-06 41.6 2.2 72 113-187 27-111 (177)
43 3ej6_A Catalase-3; heme, hydro 90.1 0.34 1.2E-05 47.4 5.5 76 111-187 555-640 (688)
44 4gdh_A DJ-1, uncharacterized p 88.1 0.16 5.5E-06 40.9 1.3 51 137-188 68-118 (194)
45 3ttv_A Catalase HPII; heme ori 86.4 0.65 2.2E-05 46.0 4.8 74 110-187 616-702 (753)
46 3l18_A Intracellular protease 86.3 0.28 9.6E-06 37.8 1.8 73 112-187 20-105 (168)
47 1vhq_A Enhancing lycopene bios 86.1 0.17 6E-06 41.6 0.5 46 141-187 89-143 (232)
48 3efe_A THIJ/PFPI family protei 84.6 0.69 2.4E-05 37.5 3.4 42 142-187 74-115 (212)
49 3cne_A Putative protease I; st 84.6 0.76 2.6E-05 35.6 3.5 47 140-187 64-114 (175)
50 3uk7_A Class I glutamine amido 84.4 0.74 2.5E-05 40.5 3.8 74 111-187 29-131 (396)
51 2fzv_A Putative arsenical resi 83.7 4.7 0.00016 34.9 8.5 78 83-173 59-149 (279)
52 3l3b_A ES1 family protein; ssg 83.4 0.98 3.4E-05 38.1 4.0 46 141-187 106-161 (242)
53 3gra_A Transcriptional regulat 82.5 0.71 2.4E-05 37.2 2.7 43 140-187 69-111 (202)
54 2ab0_A YAJL; DJ-1/THIJ superfa 82.4 0.56 1.9E-05 37.7 2.0 73 113-187 21-109 (205)
55 1jlj_A Gephyrin; globular alph 81.9 1.9 6.6E-05 35.0 5.1 71 80-156 11-92 (189)
56 1n57_A Chaperone HSP31, protei 80.4 0.9 3.1E-05 39.1 2.7 46 141-188 144-189 (291)
57 3er6_A Putative transcriptiona 80.3 0.46 1.6E-05 38.5 0.8 46 141-187 73-118 (209)
58 1u9c_A APC35852; structural ge 79.7 0.98 3.4E-05 36.3 2.6 45 141-187 88-132 (224)
59 3uk7_A Class I glutamine amido 79.1 0.53 1.8E-05 41.5 0.9 74 111-187 222-324 (396)
60 3f5d_A Protein YDEA; unknow pr 78.6 1 3.5E-05 36.7 2.4 42 141-187 62-103 (206)
61 2iuf_A Catalase; oxidoreductas 78.5 1.1 3.8E-05 43.8 3.0 90 84-187 530-642 (688)
62 2vrn_A Protease I, DR1199; cys 77.8 0.89 3.1E-05 35.6 1.8 44 141-187 74-118 (190)
63 3pzy_A MOG; ssgcid, seattle st 75.4 2 6.8E-05 34.1 3.2 70 81-157 5-81 (164)
64 1uuy_A CNX1, molybdopterin bio 75.2 3.8 0.00013 32.2 4.8 36 121-156 43-85 (167)
65 1sqs_A Conserved hypothetical 73.8 8.7 0.0003 31.2 6.8 75 84-171 3-103 (242)
66 1rw7_A YDR533CP; alpha-beta sa 73.3 1.5 5.3E-05 36.1 2.1 44 141-187 97-141 (243)
67 1g8l_A Molybdopterin biosynthe 72.5 11 0.00039 34.1 7.8 77 81-157 175-258 (411)
68 3inp_A D-ribulose-phosphate 3- 72.4 7.9 0.00027 32.9 6.4 76 111-189 124-206 (246)
69 1t5b_A Acyl carrier protein ph 72.1 16 0.00055 27.9 7.7 77 84-172 3-111 (201)
70 3jy6_A Transcriptional regulat 71.9 18 0.00062 28.7 8.2 64 82-153 6-74 (276)
71 3fvw_A Putative NAD(P)H-depend 71.8 12 0.00041 29.5 7.0 77 82-172 2-92 (192)
72 2fex_A Conserved hypothetical 71.7 0.4 1.4E-05 37.8 -1.8 42 142-187 63-104 (188)
73 3o74_A Fructose transport syst 71.4 24 0.00083 27.5 8.8 61 84-152 3-68 (272)
74 3ovp_A Ribulose-phosphate 3-ep 71.0 12 0.00041 31.0 7.1 71 110-187 101-178 (228)
75 1y5e_A Molybdenum cofactor bio 70.9 11 0.00039 29.5 6.6 68 81-156 11-86 (169)
76 1mkz_A Molybdenum cofactor bio 70.6 19 0.00065 28.4 7.9 68 81-156 8-83 (172)
77 2kyr_A Fructose-like phosphotr 69.7 11 0.00038 28.6 6.1 80 81-173 4-106 (111)
78 3h75_A Periplasmic sugar-bindi 68.5 10 0.00034 31.6 6.1 62 82-150 2-70 (350)
79 2q62_A ARSH; alpha/beta, flavo 68.3 31 0.0011 28.8 9.2 77 83-172 35-123 (247)
80 3kkl_A Probable chaperone prot 68.2 2.4 8.2E-05 35.6 2.2 45 141-187 97-141 (244)
81 3m9w_A D-xylose-binding peripl 67.6 21 0.00073 28.9 7.9 62 83-152 2-68 (313)
82 4e08_A DJ-1 beta; flavodoxin-l 67.5 1.8 6E-05 34.1 1.2 75 112-188 23-111 (190)
83 3miz_A Putative transcriptiona 67.2 20 0.00068 28.9 7.6 61 83-151 13-79 (301)
84 2pjk_A 178AA long hypothetical 66.6 19 0.00066 28.6 7.3 46 111-156 42-95 (178)
85 2fts_A Gephyrin; gephyrin, neu 66.3 12 0.00042 33.8 6.7 47 110-156 209-261 (419)
86 3tb6_A Arabinose metabolism tr 66.2 29 0.00099 27.4 8.2 62 83-152 15-81 (298)
87 1uz5_A MOEA protein, 402AA lon 65.6 13 0.00043 33.7 6.6 46 111-156 209-260 (402)
88 3n7t_A Macrophage binding prot 65.6 2.9 9.9E-05 35.2 2.2 44 141-187 104-148 (247)
89 3fse_A Two-domain protein cont 65.1 2.2 7.6E-05 38.3 1.5 73 112-187 28-115 (365)
90 3uug_A Multiple sugar-binding 64.7 27 0.00091 28.3 7.9 63 82-152 2-69 (330)
91 3ctl_A D-allulose-6-phosphate 64.6 20 0.0007 29.7 7.3 76 110-189 95-178 (231)
92 3rfq_A Pterin-4-alpha-carbinol 64.5 7.6 0.00026 31.6 4.5 69 81-156 28-103 (185)
93 1sy7_A Catalase 1; heme oxidat 64.1 4.7 0.00016 39.5 3.7 74 111-187 551-638 (715)
94 2vzf_A NADH-dependent FMN redu 62.2 8.8 0.0003 30.1 4.4 75 84-171 4-93 (197)
95 3ksm_A ABC-type sugar transpor 61.3 29 0.00099 27.1 7.3 60 84-151 1-68 (276)
96 2fn9_A Ribose ABC transporter, 61.3 28 0.00096 27.6 7.3 61 83-151 2-67 (290)
97 3g1w_A Sugar ABC transporter; 61.3 25 0.00087 28.1 7.1 62 83-152 4-71 (305)
98 1php_A 3-phosphoglycerate kina 59.7 25 0.00084 32.3 7.4 77 113-189 177-273 (394)
99 2hpv_A FMN-dependent NADH-azor 59.6 18 0.00061 28.2 5.8 78 84-172 3-119 (208)
100 3k4h_A Putative transcriptiona 59.6 31 0.0011 27.3 7.3 68 82-152 7-79 (292)
101 1rtt_A Conserved hypothetical 59.6 10 0.00035 29.4 4.3 90 84-187 8-120 (193)
102 3l6u_A ABC-type sugar transpor 59.5 28 0.00095 27.6 7.0 61 83-151 8-73 (293)
103 2r48_A Phosphotransferase syst 59.4 49 0.0017 24.8 7.9 76 83-171 3-100 (106)
104 1jr2_A Uroporphyrinogen-III sy 59.3 10 0.00034 31.6 4.4 42 111-152 38-86 (286)
105 2amj_A Modulator of drug activ 59.2 27 0.00091 27.9 6.8 80 84-172 14-99 (204)
106 3kbq_A Protein TA0487; structu 59.1 14 0.00048 29.8 5.1 44 111-154 25-74 (172)
107 3egc_A Putative ribose operon 58.3 32 0.0011 27.4 7.2 63 82-152 7-74 (291)
108 3kke_A LACI family transcripti 58.2 33 0.0011 27.7 7.3 62 83-152 15-81 (303)
109 1di6_A MOGA, molybdenum cofact 57.8 11 0.00038 30.7 4.4 39 116-156 31-80 (195)
110 3mgk_A Intracellular protease/ 57.4 2 6.8E-05 34.9 -0.3 43 142-187 65-107 (211)
111 1vpe_A Phosphoglycerate kinase 56.6 25 0.00084 32.4 6.8 77 113-189 176-272 (398)
112 16pk_A PGK, 3-phosphoglycerate 56.5 18 0.00061 33.5 5.9 73 118-190 200-292 (415)
113 2dri_A D-ribose-binding protei 56.3 24 0.00082 28.0 6.1 61 83-151 1-66 (271)
114 2rjo_A Twin-arginine transloca 56.3 61 0.0021 26.5 8.7 85 83-185 5-96 (332)
115 3h5o_A Transcriptional regulat 56.1 45 0.0015 27.5 7.9 62 83-152 62-128 (339)
116 3noq_A THIJ/PFPI family protei 55.4 4.6 0.00016 33.2 1.6 44 141-187 64-107 (231)
117 3ot1_A 4-methyl-5(B-hydroxyeth 55.3 2.8 9.6E-05 33.6 0.3 73 112-187 27-114 (208)
118 3lcm_A SMU.1420, putative oxid 55.2 30 0.001 27.2 6.5 73 85-171 3-97 (196)
119 3hs3_A Ribose operon repressor 55.0 36 0.0012 27.1 6.9 61 82-150 9-75 (277)
120 1byk_A Protein (trehalose oper 54.7 33 0.0011 26.7 6.6 62 83-152 2-68 (255)
121 3e61_A Putative transcriptiona 54.5 25 0.00087 27.7 5.9 60 83-150 8-72 (277)
122 3l49_A ABC sugar (ribose) tran 53.8 43 0.0015 26.5 7.2 61 83-151 5-70 (291)
123 2r4q_A Phosphotransferase syst 53.7 53 0.0018 24.6 7.2 64 83-159 3-74 (106)
124 3p0r_A Azoreductase; structura 53.5 37 0.0013 27.1 6.8 79 83-172 5-117 (211)
125 3rot_A ABC sugar transporter, 53.4 37 0.0013 27.2 6.8 62 82-151 2-70 (297)
126 3bhn_A THIJ/PFPI domain protei 52.8 2.1 7.1E-05 35.8 -0.9 44 140-187 78-122 (236)
127 3o1i_D Periplasmic protein TOR 52.7 36 0.0012 27.0 6.6 62 83-152 5-73 (304)
128 2ioj_A Hypothetical protein AF 52.6 12 0.00041 28.1 3.5 63 110-184 41-105 (139)
129 1fw8_A PGK P72, phosphoglycera 52.3 23 0.0008 32.7 6.0 79 113-191 123-222 (416)
130 3ewn_A THIJ/PFPI family protei 52.1 3.9 0.00013 34.4 0.7 43 142-187 84-127 (253)
131 3dbi_A Sugar-binding transcrip 52.1 59 0.002 26.6 8.0 64 82-151 60-128 (338)
132 1v6s_A Phosphoglycerate kinase 51.7 20 0.00067 32.9 5.3 82 108-189 166-270 (390)
133 3kjx_A Transcriptional regulat 51.2 61 0.0021 26.7 8.0 62 83-152 68-134 (344)
134 3brq_A HTH-type transcriptiona 50.7 56 0.0019 25.7 7.4 62 83-152 19-87 (296)
135 3cwc_A Putative glycerate kina 49.7 12 0.0004 34.2 3.5 48 135-187 280-329 (383)
136 3q3v_A Phosphoglycerate kinase 49.7 27 0.00093 32.1 6.0 80 109-188 177-279 (403)
137 1ccw_A Protein (glutamate muta 49.7 58 0.002 24.4 7.0 80 107-192 16-101 (137)
138 2ioy_A Periplasmic sugar-bindi 49.0 42 0.0014 26.7 6.5 43 109-151 19-66 (283)
139 2a5l_A Trp repressor binding p 48.6 18 0.0006 27.8 4.0 91 82-187 5-120 (200)
140 1tqj_A Ribulose-phosphate 3-ep 48.4 34 0.0012 28.0 5.9 75 109-185 100-181 (230)
141 3c3k_A Alanine racemase; struc 48.1 52 0.0018 26.1 6.9 61 83-151 8-73 (285)
142 1ydg_A Trp repressor binding p 48.0 16 0.00055 28.5 3.7 78 105-187 19-127 (211)
143 3re1_A Uroporphyrinogen-III sy 47.9 32 0.0011 28.4 5.7 42 110-151 26-75 (269)
144 3rpe_A MDAB, modulator of drug 47.5 61 0.0021 26.7 7.3 82 83-173 26-113 (218)
145 3bbl_A Regulatory protein of L 47.3 50 0.0017 26.3 6.7 66 82-152 3-74 (287)
146 3e3m_A Transcriptional regulat 46.2 48 0.0016 27.6 6.6 62 83-152 70-136 (355)
147 3vtz_A Glucose 1-dehydrogenase 46.0 1.2E+02 0.004 24.6 9.7 45 108-152 25-91 (269)
148 1qpg_A PGK, 3-phosphoglycerate 45.5 23 0.00078 32.7 4.8 83 109-191 186-292 (415)
149 1h1y_A D-ribulose-5-phosphate 45.5 80 0.0028 25.3 7.7 38 111-148 103-144 (228)
150 3oz7_A Phosphoglycerate kinase 45.0 53 0.0018 30.3 7.1 81 108-188 189-293 (417)
151 3k1y_A Oxidoreductase; structu 44.7 30 0.001 27.7 4.9 79 81-172 10-110 (191)
152 4es6_A Uroporphyrinogen-III sy 44.7 37 0.0013 27.5 5.5 42 110-151 18-67 (254)
153 2iks_A DNA-binding transcripti 44.7 78 0.0027 25.2 7.4 62 83-152 20-86 (293)
154 3mw8_A Uroporphyrinogen-III sy 44.6 25 0.00085 28.2 4.4 42 111-152 14-60 (240)
155 2fep_A Catabolite control prot 44.6 69 0.0024 25.6 7.1 61 83-151 16-81 (289)
156 3oid_A Enoyl-[acyl-carrier-pro 44.4 1.2E+02 0.0041 24.3 9.3 20 108-127 15-34 (258)
157 1dbq_A Purine repressor; trans 44.1 56 0.0019 25.8 6.4 62 83-152 7-73 (289)
158 1d4a_A DT-diaphorase, quinone 43.7 81 0.0028 26.2 7.6 75 84-171 4-117 (273)
159 2rgy_A Transcriptional regulat 43.6 55 0.0019 26.1 6.4 62 83-152 8-77 (290)
160 3cs3_A Sugar-binding transcrip 42.3 21 0.00073 28.3 3.6 60 83-152 8-67 (277)
161 3r6w_A FMN-dependent NADH-azor 42.1 93 0.0032 24.3 7.4 76 84-171 3-111 (212)
162 2bwn_A 5-aminolevulinate synth 42.1 62 0.0021 27.0 6.7 60 111-172 143-207 (401)
163 3u7r_A NADPH-dependent FMN red 42.1 34 0.0012 27.4 4.9 58 111-173 22-93 (190)
164 1qpz_A PURA, protein (purine n 42.0 92 0.0032 25.5 7.7 62 83-152 58-124 (340)
165 3d8u_A PURR transcriptional re 41.7 40 0.0014 26.4 5.1 62 83-152 3-69 (275)
166 3huu_A Transcription regulator 41.2 41 0.0014 27.1 5.3 67 83-152 22-93 (305)
167 4fey_A Phosphoglycerate kinase 40.4 25 0.00085 32.3 4.1 78 111-188 171-271 (395)
168 2o20_A Catabolite control prot 40.2 89 0.003 25.5 7.3 61 83-151 63-128 (332)
169 3p19_A BFPVVD8, putative blue 40.0 1.4E+02 0.005 24.0 8.5 46 108-153 27-98 (266)
170 2vk2_A YTFQ, ABC transporter p 39.9 76 0.0026 25.5 6.7 61 84-152 3-68 (306)
171 2zki_A 199AA long hypothetical 39.9 29 0.001 26.6 4.0 58 106-169 17-96 (199)
172 3gk3_A Acetoacetyl-COA reducta 39.6 1.4E+02 0.0049 23.8 8.6 20 108-127 36-55 (269)
173 3brs_A Periplasmic binding pro 39.1 1E+02 0.0034 24.2 7.2 64 83-152 5-75 (289)
174 3sju_A Keto reductase; short-c 38.9 1.5E+02 0.0053 23.9 9.1 36 78-127 19-54 (279)
175 2fvy_A D-galactose-binding per 38.4 79 0.0027 25.0 6.5 60 84-151 3-68 (309)
176 3ezx_A MMCP 1, monomethylamine 37.9 89 0.003 25.4 6.8 85 106-192 104-191 (215)
177 3tem_A Ribosyldihydronicotinam 37.8 90 0.0031 25.4 6.9 76 84-172 3-117 (228)
178 3orf_A Dihydropteridine reduct 37.4 1.5E+02 0.0052 23.4 9.2 45 108-152 33-97 (251)
179 3ezl_A Acetoacetyl-COA reducta 37.3 1.3E+02 0.0045 23.6 7.7 20 108-127 24-43 (256)
180 2is8_A Molybdopterin biosynthe 37.3 27 0.00094 27.1 3.5 46 111-156 23-76 (164)
181 2g2c_A Putative molybdenum cof 37.2 25 0.00085 27.4 3.2 40 117-156 38-83 (167)
182 3gv0_A Transcriptional regulat 37.1 49 0.0017 26.4 5.1 64 83-152 8-76 (288)
183 3dzz_A Putative pyridoxal 5'-p 36.8 81 0.0028 25.9 6.5 61 112-172 121-192 (391)
184 2wzb_A Phosphoglycerate kinase 36.4 27 0.00092 32.3 3.7 79 113-191 195-294 (416)
185 3f2v_A General stress protein 36.3 63 0.0022 25.8 5.6 73 84-171 3-82 (192)
186 2qh8_A Uncharacterized protein 35.9 94 0.0032 25.1 6.7 60 82-150 7-77 (302)
187 1o1z_A GDPD, glycerophosphodie 35.8 63 0.0022 26.2 5.6 36 111-147 188-223 (234)
188 3v2g_A 3-oxoacyl-[acyl-carrier 35.7 1.4E+02 0.0049 24.1 7.8 36 117-152 76-119 (271)
189 2m1z_A LMO0427 protein; homolo 35.5 26 0.00089 26.3 2.9 81 83-172 3-102 (106)
190 3ks6_A Glycerophosphoryl diest 35.3 68 0.0023 26.2 5.8 41 106-147 189-230 (250)
191 2hsg_A Glucose-resistance amyl 35.1 82 0.0028 25.7 6.2 62 83-152 60-126 (332)
192 3s2y_A Chromate reductase; ura 41.2 8.1 0.00028 31.0 0.0 33 135-172 66-98 (199)
193 2l69_A Rossmann 2X3 fold prote 34.8 38 0.0013 25.9 3.7 33 110-142 64-96 (134)
194 3d7l_A LIN1944 protein; APC893 34.8 98 0.0034 23.2 6.3 45 108-153 14-69 (202)
195 4hs4_A Chromate reductase; tri 34.7 46 0.0016 26.5 4.5 35 134-173 65-99 (199)
196 3r1i_A Short-chain type dehydr 34.5 1.4E+02 0.0046 24.4 7.5 36 118-153 77-120 (276)
197 2otd_A Glycerophosphodiester p 33.9 77 0.0026 25.6 5.8 40 107-147 193-233 (247)
198 1wcw_A Uroporphyrinogen III sy 33.6 50 0.0017 26.6 4.6 43 110-152 19-69 (261)
199 2ark_A Flavodoxin; FMN, struct 33.5 83 0.0028 24.1 5.7 74 106-187 18-100 (188)
200 3icc_A Putative 3-oxoacyl-(acy 33.5 1.7E+02 0.0058 22.8 8.9 20 108-127 18-37 (255)
201 2e7j_A SEP-tRNA:Cys-tRNA synth 33.4 86 0.0029 25.5 6.1 59 112-171 105-175 (371)
202 4dmm_A 3-oxoacyl-[acyl-carrier 33.3 1.7E+02 0.0057 23.6 7.8 21 132-152 89-116 (269)
203 4ibo_A Gluconate dehydrogenase 33.0 1.5E+02 0.0053 23.9 7.6 21 132-152 86-113 (271)
204 2qu7_A Putative transcriptiona 33.0 1.1E+02 0.0037 24.2 6.5 60 84-152 9-73 (288)
205 2x7x_A Sensor protein; transfe 32.8 99 0.0034 25.1 6.4 60 83-151 6-71 (325)
206 2yxb_A Coenzyme B12-dependent 32.8 1.7E+02 0.0057 22.5 8.9 80 107-192 31-114 (161)
207 3qk7_A Transcriptional regulat 32.6 83 0.0028 25.2 5.8 66 83-152 6-75 (294)
208 4gi5_A Quinone reductase; prot 32.6 1.2E+02 0.0042 25.8 7.1 79 80-171 20-140 (280)
209 3qlj_A Short chain dehydrogena 32.5 1.6E+02 0.0055 24.4 7.8 36 117-152 81-124 (322)
210 3hcw_A Maltose operon transcri 32.1 46 0.0016 26.7 4.1 67 83-152 7-78 (295)
211 3osu_A 3-oxoacyl-[acyl-carrier 31.9 1.8E+02 0.0061 22.9 7.6 36 117-152 49-92 (246)
212 3clk_A Transcription regulator 31.1 85 0.0029 24.9 5.6 62 83-152 8-75 (290)
213 1geg_A Acetoin reductase; SDR 31.0 1.8E+02 0.0061 23.0 7.5 37 116-152 45-89 (256)
214 3sc4_A Short chain dehydrogena 31.0 1.6E+02 0.0053 24.0 7.3 40 114-153 57-104 (285)
215 1vd6_A Glycerophosphoryl diest 30.8 1E+02 0.0035 24.6 6.0 41 106-147 171-212 (224)
216 4iin_A 3-ketoacyl-acyl carrier 30.8 2E+02 0.0069 22.9 7.9 11 142-152 107-117 (271)
217 3bil_A Probable LACI-family tr 30.7 94 0.0032 25.8 6.0 60 84-151 67-131 (348)
218 1jx6_A LUXP protein; protein-l 30.7 2E+02 0.0067 23.3 7.9 60 83-150 43-112 (342)
219 3svl_A Protein YIEF; E. coli C 30.6 28 0.00094 27.6 2.5 33 135-172 65-97 (193)
220 3tfo_A Putative 3-oxoacyl-(acy 30.6 2.1E+02 0.0072 23.2 8.0 36 117-152 48-91 (264)
221 3f9t_A TDC, L-tyrosine decarbo 30.5 1.5E+02 0.005 24.1 7.0 60 113-173 136-201 (397)
222 3ksu_A 3-oxoacyl-acyl carrier 30.2 1.5E+02 0.0052 23.7 7.0 36 117-152 58-101 (262)
223 3tsc_A Putative oxidoreductase 29.7 2.2E+02 0.0074 22.8 8.1 39 115-153 66-112 (277)
224 3jvd_A Transcriptional regulat 29.6 1.2E+02 0.0041 24.9 6.4 60 83-151 64-128 (333)
225 3kvo_A Hydroxysteroid dehydrog 29.5 1.7E+02 0.0057 25.0 7.5 39 114-152 93-139 (346)
226 3a28_C L-2.3-butanediol dehydr 29.5 2E+02 0.0067 22.8 7.5 38 115-152 46-91 (258)
227 2pbq_A Molybdenum cofactor bio 29.5 1.5E+02 0.0051 23.2 6.7 38 119-156 39-82 (178)
228 3l12_A Putative glycerophospho 29.4 98 0.0033 26.1 5.9 41 107-148 254-295 (313)
229 1to6_A Glycerate kinase; glyce 29.0 15 0.00051 33.4 0.7 47 135-187 271-319 (371)
230 1wu2_A MOEA protein, molybdopt 28.9 38 0.0013 30.5 3.3 44 111-154 213-262 (396)
231 2uvd_A 3-oxoacyl-(acyl-carrier 28.9 2.1E+02 0.0071 22.4 7.6 36 117-152 49-92 (246)
232 1gud_A ALBP, D-allose-binding 28.7 1.1E+02 0.0039 24.2 6.0 43 109-151 19-68 (288)
233 3iwt_A 178AA long hypothetical 28.5 1.1E+02 0.0039 23.5 5.8 45 110-154 41-93 (178)
234 4dq6_A Putative pyridoxal phos 28.3 96 0.0033 25.4 5.6 61 112-172 126-196 (391)
235 1tjy_A Sugar transport protein 28.3 1.7E+02 0.0057 23.8 7.0 61 83-151 3-69 (316)
236 3gaf_A 7-alpha-hydroxysteroid 28.1 2.2E+02 0.0077 22.5 7.7 33 120-152 59-99 (256)
237 4dik_A Flavoprotein; TM0755, e 27.6 2E+02 0.0068 25.6 7.9 75 108-183 281-360 (410)
238 3oec_A Carveol dehydrogenase ( 27.4 1.9E+02 0.0066 23.9 7.4 35 118-152 103-145 (317)
239 3pgx_A Carveol dehydrogenase; 27.4 2E+02 0.0067 23.1 7.3 37 116-152 71-115 (280)
240 1tqx_A D-ribulose-5-phosphate 27.3 1E+02 0.0035 25.4 5.5 73 110-189 100-184 (227)
241 4iiu_A 3-oxoacyl-[acyl-carrier 27.2 2.3E+02 0.008 22.4 7.8 21 132-152 87-114 (267)
242 2o55_A Putative glycerophospho 27.1 1.2E+02 0.004 24.7 5.8 41 107-147 198-242 (258)
243 1uay_A Type II 3-hydroxyacyl-C 27.1 2E+02 0.0068 22.0 7.0 45 108-152 13-76 (242)
244 3iwp_A Copper homeostasis prot 26.9 1.6E+02 0.0056 25.6 7.0 47 134-185 170-217 (287)
245 1ujn_A Dehydroquinate synthase 26.8 54 0.0019 28.5 3.9 44 142-188 53-96 (348)
246 3i6i_A Putative leucoanthocyan 26.7 2.6E+02 0.009 22.9 9.1 37 132-172 71-109 (346)
247 1ja9_A 4HNR, 1,3,6,8-tetrahydr 26.6 2E+02 0.0068 22.5 7.0 36 117-152 66-109 (274)
248 3un1_A Probable oxidoreductase 26.5 2.5E+02 0.0085 22.5 9.4 46 108-153 39-107 (260)
249 3k9c_A Transcriptional regulat 26.4 64 0.0022 25.8 4.0 61 83-152 12-76 (289)
250 3lft_A Uncharacterized protein 26.4 1.5E+02 0.0053 23.6 6.4 59 83-150 2-70 (295)
251 3dii_A Short-chain dehydrogena 26.3 2.4E+02 0.0081 22.2 8.2 20 108-127 13-32 (247)
252 1qyd_A Pinoresinol-lariciresin 26.2 2.5E+02 0.0084 22.4 9.7 53 119-172 54-106 (313)
253 1d2f_A MALY protein; aminotran 25.8 2.2E+02 0.0074 23.5 7.4 58 112-172 123-194 (390)
254 3l8a_A METC, putative aminotra 25.7 1.9E+02 0.0064 24.4 7.1 62 112-173 155-227 (421)
255 3d02_A Putative LACI-type tran 25.5 1.8E+02 0.0062 22.9 6.6 61 83-151 4-70 (303)
256 1gee_A Glucose 1-dehydrogenase 25.4 2.4E+02 0.0082 21.9 8.0 36 117-152 52-95 (261)
257 3ch0_A Glycerophosphodiester p 25.3 93 0.0032 25.4 4.9 41 106-147 221-262 (272)
258 3is3_A 17BETA-hydroxysteroid d 25.3 2.6E+02 0.0089 22.3 7.7 11 142-152 96-106 (270)
259 2dr1_A PH1308 protein, 386AA l 25.3 1.4E+02 0.0048 24.3 6.0 59 112-171 109-174 (386)
260 3cxt_A Dehydrogenase with diff 25.2 2.6E+02 0.0088 22.9 7.7 21 132-152 94-121 (291)
261 3t7c_A Carveol dehydrogenase; 25.1 2.5E+02 0.0087 22.9 7.6 39 114-152 81-127 (299)
262 3ihj_A Alanine aminotransferas 25.0 2.2E+02 0.0076 25.2 7.7 63 111-173 192-268 (498)
263 2jah_A Clavulanic acid dehydro 25.0 2.5E+02 0.0086 22.0 7.6 34 119-152 53-94 (247)
264 3e03_A Short chain dehydrogena 25.0 2.3E+02 0.008 22.7 7.3 39 115-153 55-101 (274)
265 3a2b_A Serine palmitoyltransfe 25.0 1.9E+02 0.0066 23.9 6.9 59 112-172 139-202 (398)
266 8abp_A L-arabinose-binding pro 24.9 1.1E+02 0.0038 24.2 5.2 60 83-151 2-66 (306)
267 1ooe_A Dihydropteridine reduct 24.6 2.4E+02 0.0084 21.8 7.7 46 108-153 14-83 (236)
268 2pz0_A Glycerophosphoryl diest 24.6 98 0.0034 25.1 4.9 41 106-147 196-237 (252)
269 2z5l_A Tylkr1, tylactone synth 24.5 1.6E+02 0.0054 26.9 6.7 39 115-153 305-346 (511)
270 2rhc_B Actinorhodin polyketide 24.4 2.8E+02 0.0094 22.3 7.8 32 121-152 70-109 (277)
271 3u5t_A 3-oxoacyl-[acyl-carrier 24.2 2.4E+02 0.0083 22.6 7.3 20 108-127 38-57 (267)
272 1u0t_A Inorganic polyphosphate 24.0 1.9E+02 0.0065 24.4 6.8 84 85-188 6-110 (307)
273 2oog_A Glycerophosphoryl diest 23.9 1E+02 0.0034 25.6 4.9 40 107-147 227-267 (287)
274 2h4a_A YRAM (HI1655); perplasm 23.9 85 0.0029 26.7 4.6 66 108-183 137-207 (325)
275 3kax_A Aminotransferase, class 23.9 2.8E+02 0.0096 22.5 7.6 62 112-173 118-189 (383)
276 3s55_A Putative short-chain de 23.9 2.7E+02 0.0091 22.2 7.4 38 115-152 64-109 (281)
277 2dtx_A Glucose 1-dehydrogenase 23.9 2.8E+02 0.0095 22.1 9.0 45 108-152 19-84 (264)
278 1p0k_A Isopentenyl-diphosphate 23.8 2.2E+02 0.0077 24.2 7.3 41 111-151 167-213 (349)
279 2zc0_A Alanine glyoxylate tran 23.6 2E+02 0.0067 23.9 6.7 61 112-172 134-207 (407)
280 1edo_A Beta-keto acyl carrier 23.5 2.5E+02 0.0086 21.5 7.5 37 117-153 46-90 (244)
281 3l6e_A Oxidoreductase, short-c 23.4 2.6E+02 0.0088 21.9 7.1 21 108-128 14-34 (235)
282 2yrr_A Aminotransferase, class 23.4 1.8E+02 0.0062 23.1 6.2 60 112-172 88-153 (353)
283 1v8a_A Hydroxyethylthiazole ki 23.2 1.5E+02 0.005 24.6 5.8 39 111-152 27-66 (265)
284 1zmt_A Haloalcohol dehalogenas 23.2 2.4E+02 0.0084 22.2 7.0 12 142-153 72-83 (254)
285 3i4f_A 3-oxoacyl-[acyl-carrier 23.2 2.7E+02 0.0093 21.8 8.1 44 108-151 18-94 (264)
286 3slg_A PBGP3 protein; structur 23.2 2.6E+02 0.0087 23.0 7.3 56 84-153 25-102 (372)
287 3h7a_A Short chain dehydrogena 23.1 2.8E+02 0.0096 21.9 7.6 37 116-152 50-93 (252)
288 3l9w_A Glutathione-regulated p 23.1 1.9E+02 0.0064 25.7 6.8 75 83-172 237-317 (413)
289 1uzm_A 3-oxoacyl-[acyl-carrier 23.1 2.8E+02 0.0094 21.8 8.8 45 108-152 26-91 (247)
290 1jye_A Lactose operon represso 23.0 1.8E+02 0.0063 23.9 6.4 61 83-151 61-127 (349)
291 2q2v_A Beta-D-hydroxybutyrate 22.9 2.6E+02 0.0088 22.0 7.1 36 117-152 46-89 (255)
292 3uce_A Dehydrogenase; rossmann 22.8 1.5E+02 0.0053 22.8 5.6 45 108-152 17-69 (223)
293 2fwm_X 2,3-dihydro-2,3-dihydro 22.7 2.8E+02 0.0096 21.7 8.0 45 108-152 18-84 (250)
294 1o5x_A TIM, triosephosphate is 22.6 1.3E+02 0.0045 25.5 5.4 71 110-183 20-127 (248)
295 4fe7_A Xylose operon regulator 22.1 94 0.0032 26.6 4.5 58 82-148 24-82 (412)
296 2h3h_A Sugar ABC transporter, 21.9 2.6E+02 0.0087 22.3 6.9 60 84-152 2-67 (313)
297 3o0f_A Putative metal-dependen 21.9 90 0.0031 27.0 4.3 63 86-155 198-263 (301)
298 3uve_A Carveol dehydrogenase ( 21.6 3.1E+02 0.011 21.9 7.5 37 116-152 70-114 (286)
299 1zmr_A Phosphoglycerate kinase 21.5 1.5E+02 0.005 27.2 5.7 67 117-189 177-264 (387)
300 3qvo_A NMRA family protein; st 21.5 2.8E+02 0.0097 21.4 8.3 61 108-171 34-114 (236)
301 1req_A Methylmalonyl-COA mutas 21.3 3.2E+02 0.011 26.8 8.5 82 106-193 608-693 (727)
302 2c5m_A CTP synthase; cytidine 21.0 64 0.0022 28.5 3.1 93 79-189 19-134 (294)
303 3st7_A Capsular polysaccharide 20.9 1.9E+02 0.0065 24.0 6.1 45 108-152 11-56 (369)
304 1dxe_A 2-dehydro-3-deoxy-galac 20.8 1.3E+02 0.0045 24.8 5.0 39 110-149 58-98 (256)
305 3rwb_A TPLDH, pyridoxal 4-dehy 20.7 3.1E+02 0.011 21.5 7.3 20 108-127 17-36 (247)
306 2z61_A Probable aspartate amin 20.5 1.4E+02 0.0049 24.4 5.2 57 112-172 125-182 (370)
307 3imf_A Short chain dehydrogena 20.5 2.5E+02 0.0086 22.2 6.5 18 109-126 18-35 (257)
308 1h5q_A NADP-dependent mannitol 20.5 3E+02 0.01 21.3 8.0 22 132-153 75-103 (265)
309 3nra_A Aspartate aminotransfer 20.4 3.6E+02 0.012 22.1 8.7 62 112-173 138-212 (407)
310 1yb1_A 17-beta-hydroxysteroid 20.4 3.3E+02 0.011 21.6 9.0 22 132-153 91-119 (272)
311 3ivr_A Putative long-chain-fat 20.3 1.2E+02 0.0041 26.6 4.9 35 115-149 74-108 (509)
312 3aow_A Putative uncharacterize 20.2 2.8E+02 0.0096 24.0 7.2 63 111-173 175-250 (448)
313 3vnd_A TSA, tryptophan synthas 20.2 3.7E+02 0.013 22.6 7.8 40 110-149 137-177 (267)
314 3ftp_A 3-oxoacyl-[acyl-carrier 20.2 2.4E+02 0.0083 22.7 6.5 20 108-127 39-58 (270)
315 1y80_A Predicted cobalamin bin 20.1 3.2E+02 0.011 21.3 8.9 83 106-192 100-185 (210)
316 1c7n_A Cystalysin; transferase 20.0 1.6E+02 0.0054 24.3 5.4 59 113-171 126-195 (399)
No 1
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=99.77 E-value=4.6e-19 Score=151.29 Aligned_cols=112 Identities=21% Similarity=0.322 Sum_probs=75.1
Q ss_pred CCCCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcCh
Q 028817 80 LNNRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYF 159 (203)
Q Consensus 80 ~~~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY 159 (203)
|++||+|||+++..... ...+++..++|+.+.|+++|+++|+.|++||+..+.+ ++++++.+|||||+||.||+|.+|
T Consensus 1 m~~~p~IGi~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~aG~~pv~lp~~~~~~-~~~~l~~~DGlil~GG~~v~P~~y 78 (254)
T 3fij_A 1 MSLKPVIGITGNRLVKG-VDVFYGHRVTYTQQRYVDAIQKVGGFPIALPIDDPST-AVQAISLVDGLLLTGGQDITPQLY 78 (254)
T ss_dssp --CCCEEEEEC-------------------CHHHHHHHHHHTCEEEEECCCCGGG-HHHHHHTCSEEEECCCSCCCGGGG
T ss_pred CCCCCEEEEeCCccccc-ccccCCcchhhhhHHHHHHHHHCCCEEEEEeCCCchH-HHHHHhhCCEEEECCCCCCChhhc
Confidence 35789999999864322 1123446788999999999999999999999877666 889999999999999999999999
Q ss_pred HH-----------HHHHHHHHHHHHhC-CCCcceEee----------CCccccccc
Q 028817 160 QI-----------VEKIFKHEAIYERK-KQSLVHGIT----------GDVVQKDYY 193 (203)
Q Consensus 160 ~~-----------~~~I~~~AL~~n~~-g~~PV~Gic----------~~~~~~~~~ 193 (203)
++ .++.+++++.+... .+.|||||| ||+|-||..
T Consensus 79 g~~~~~~~~~~~~~rd~~~~~lir~a~~~~~PiLGIC~G~Qll~~a~Gg~v~~~~~ 134 (254)
T 3fij_A 79 LEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGMQLVNVALGGTLYQDIS 134 (254)
T ss_dssp TCCCCTTCCCCCHHHHHHHHHHHHHHHHTTCCEEEETHHHHHHHHHTTCCEESSGG
T ss_pred CCccCcccCCcChhhhHHHHHHHHHHHHcCCCEEEECHHHHHHHHHhCCceecccc
Confidence 54 34444444444332 346999999 457777754
No 2
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=99.66 E-value=2.3e-16 Score=139.31 Aligned_cols=108 Identities=28% Similarity=0.375 Sum_probs=84.5
Q ss_pred CCCCCCCCCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCC-C
Q 028817 75 ATDRRLNNRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGW-A 153 (203)
Q Consensus 75 ~~~~~~~~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~-D 153 (203)
.++..++.||+|||+++..... .......+|+.++|+++|+++|+.+++++...+.+.++++++.+|||||+||. |
T Consensus 22 ~~~~~~~~~P~IGI~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~G~~~~vv~~~~~~~~i~~~l~~~dglil~GG~~~ 98 (315)
T 1l9x_A 22 RPHGDTAKKPIIGILMQKCRNK---VMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVD 98 (315)
T ss_dssp ------CCCCEEEEECEECCSH---HHHTTCSEEEEHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHHSSEEEECCCCCC
T ss_pred CCCcccCCCCEEEEECCccccc---ccccCcceehHHHHHHHHHHCCCEEEEEecCCCHHHHHHHHhcCCEEEEeCCCcc
Confidence 5566678899999999864311 01123467899999999999999999999877778888899999999999996 9
Q ss_pred CCCcChH-HHHHHHHHHHHHHhCC-CCcceEeeC
Q 028817 154 KKGLYFQ-IVEKIFKHEAIYERKK-QSLVHGITG 185 (203)
Q Consensus 154 VdP~yY~-~~~~I~~~AL~~n~~g-~~PV~Gic~ 185 (203)
++|..|+ .++.+++.+++.+++| +.||||||-
T Consensus 99 v~p~~~~~~~~~l~~~~~~~~~~g~~~PiLGIC~ 132 (315)
T 1l9x_A 99 LRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCL 132 (315)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETH
T ss_pred cChhhhhHHHHHHHHHHHHHHhcCCCceEEEECh
Confidence 9998785 4567899999999888 569999993
No 3
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.99 E-value=1.4e-10 Score=92.93 Aligned_cols=80 Identities=16% Similarity=0.160 Sum_probs=54.9
Q ss_pred CCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHH
Q 028817 82 NRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQI 161 (203)
Q Consensus 82 ~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~ 161 (203)
+||+|||++...+ ..+|+++++++|+.+++++.. + .++.+|||+|+||. +..++.
T Consensus 1 ~~p~Igi~~~~~~---------------~~~~~~~l~~~G~~~~~~~~~---~----~l~~~dglil~GG~---~~~~~~ 55 (191)
T 2ywd_A 1 MRGVVGVLALQGD---------------FREHKEALKRLGIEAKEVRKK---E----HLEGLKALIVPGGE---STTIGK 55 (191)
T ss_dssp --CCEEEECSSSC---------------HHHHHHHHHTTTCCCEEECSG---G----GGTTCSEEEECSSC---HHHHHH
T ss_pred CCcEEEEEecCCc---------------hHHHHHHHHHCCCEEEEeCCh---h----hhccCCEEEECCCC---hhhhHH
Confidence 3799999986421 257899999999999999743 2 25679999999994 222332
Q ss_pred ---HHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 162 ---VEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 162 ---~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
.+.+.+...+..++|+.||||||+|
T Consensus 56 ~~~~~~~~~~i~~~~~~~~~PilGiC~G 83 (191)
T 2ywd_A 56 LAREYGIEDEVRKRVEEGSLALFGTCAG 83 (191)
T ss_dssp HHHHTTHHHHHHHHHHTTCCEEEEETHH
T ss_pred hhhhhhHHHHHHHHHHCCCCeEEEECHH
Confidence 2344555555555554899999975
No 4
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G
Probab=98.79 E-value=4.3e-09 Score=87.26 Aligned_cols=83 Identities=16% Similarity=0.254 Sum_probs=54.9
Q ss_pred CCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHC---CCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCC-CCCc
Q 028817 82 NRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESA---GARVIPLIYNEPEEILFEKLKLVNGVLLTGGWA-KKGL 157 (203)
Q Consensus 82 ~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~A---GA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~D-VdP~ 157 (203)
.|++|||+..... ..+|+++++++ |+.+++++. . +.++.+|||+|+||.+ +...
T Consensus 2 ~~~~I~Il~~~~~---------------~~~~~~~l~~~~~~G~~~~~~~~---~----~~l~~~dglil~GG~~~~~~~ 59 (227)
T 2abw_A 2 SEITIGVLSLQGD---------------FEPHINHFIKLQIPSLNIIQVRN---V----HDLGLCDGLVIPGGESTTVRR 59 (227)
T ss_dssp CCEEEEEECTTSC---------------CHHHHHHHHTTCCTTEEEEEECS---H----HHHHTCSEEEECCSCHHHHHH
T ss_pred CCcEEEEEeCCCC---------------cHHHHHHHHHhccCCeEEEEEcC---c----cccccCCEEEECCCcHHHHHH
Confidence 4688999875411 14799999999 999998873 2 2367899999999973 2112
Q ss_pred ChHH-HHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 158 YFQI-VEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 158 yY~~-~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
+... ...+.+...++.++...||||||+|
T Consensus 60 ~~~~d~~~~~~~i~~~~~~~g~PilGIC~G 89 (227)
T 2abw_A 60 CCAYENDTLYNALVHFIHVLKKPIWGTCAG 89 (227)
T ss_dssp HTTHHHHHHHHHHHHHHHTSCCCEEEETHH
T ss_pred HHHHhHHHHHHHHHHHHHhcCCEEEEECHH
Confidence 2221 1334444444444414799999986
No 5
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=98.58 E-value=3.9e-08 Score=79.18 Aligned_cols=69 Identities=14% Similarity=0.064 Sum_probs=46.9
Q ss_pred hHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 110 AASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 110 ~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
...|+++++++|+.+++++...+.+++++ +.+|||+|+||. +|..++....+. +...+.+.||+|||.|
T Consensus 13 ~~~~~~~l~~~G~~~~~~~~~~~~~~~~~--~~~dglil~Gg~--~~~~~~~~~~~i----~~~~~~~~PilGIC~G 81 (189)
T 1wl8_A 13 VHRIWRTLRYLGVETKIIPNTTPLEEIKA--MNPKGIIFSGGP--SLENTGNCEKVL----EHYDEFNVPILGICLG 81 (189)
T ss_dssp HHHHHHHHHHTTCEEEEEETTCCHHHHHH--TCCSEEEECCCS--CTTCCTTHHHHH----HTGGGTCSCEEEETHH
T ss_pred HHHHHHHHHHCCCeEEEEECCCChHHhcc--cCCCEEEECCCC--ChhhhhhHHHHH----HHHhhCCCeEEEEcHH
Confidence 35888999999999999997654333221 359999999997 555544322222 2222445799999964
No 6
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=98.43 E-value=7.7e-08 Score=79.75 Aligned_cols=67 Identities=13% Similarity=0.135 Sum_probs=46.8
Q ss_pred hHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHH--HHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 110 AASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQI--VEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 110 ~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~--~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
..+|+++++++|+.++++++..+.++ ++.+|||+||||. .+..|+. ...+.+.++ +.+.||||||-|
T Consensus 26 ~~~~~~~l~~~G~~~~vv~~~~~~~~----l~~~DglIl~GG~--p~~~~~~~~~~~l~~~~~----~~~~PiLGIC~G 94 (212)
T 2a9v_A 26 THREWRVLRELGVDTKIVPNDIDSSE----LDGLDGLVLSGGA--PNIDEELDKLGSVGKYID----DHNYPILGICVG 94 (212)
T ss_dssp TCHHHHHHHHTTCBCCEEETTSCGGG----GTTCSEEEEEEEC--SCGGGTGGGHHHHHHHHH----HCCSCEEEETHH
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHH----HhCCCEEEECCCC--CCCCcccccchhHHHHHH----hCCCCEEEEChH
Confidence 46799999999999999998654433 3449999999994 2334543 344444443 234699999964
No 7
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=98.43 E-value=1.1e-07 Score=76.18 Aligned_cols=62 Identities=11% Similarity=0.137 Sum_probs=43.5
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHH---HHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQI---VEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~---~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
.+|+++++++|+.+++++. .+ .++.+|||+|+||.+ ..|+. .+.+++.+. +.+.||||||.|
T Consensus 13 ~~~~~~l~~~G~~~~~~~~---~~----~~~~~dglil~GG~~---~~~~~~~~~~~~~~~i~----~~~~PilGIC~G 77 (186)
T 2ywj_A 13 EEHEEAIKKAGYEAKKVKR---VE----DLEGIDALIIPGGES---TAIGKLMKKYGLLEKIK----NSNLPILGTCAG 77 (186)
T ss_dssp HHHHHHHHHTTSEEEEECS---GG----GGTTCSEEEECCSCH---HHHHHHHHHTTHHHHHH----TCCCCEEEETHH
T ss_pred HHHHHHHHHCCCEEEEECC---hH----HhccCCEEEECCCCc---hhhhhhhhccCHHHHHH----hcCCcEEEECHH
Confidence 4578999999999999874 22 367899999999964 23433 233444432 445699999964
No 8
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=98.42 E-value=1.2e-07 Score=78.56 Aligned_cols=80 Identities=19% Similarity=0.303 Sum_probs=50.5
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChH
Q 028817 81 NNRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQ 160 (203)
Q Consensus 81 ~~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~ 160 (203)
+.++.|+|+.... .| ..|+++++++|+.+++++.. + .++.+|||+|+||.+ ..++
T Consensus 21 ~~~~~I~il~~~~-------------~~--~~~~~~l~~~G~~~~~~~~~---~----~l~~~Dglil~GG~~---~~~~ 75 (219)
T 1q7r_A 21 QSNMKIGVLGLQG-------------AV--REHVRAIEACGAEAVIVKKS---E----QLEGLDGLVLPGGES---TTMR 75 (219)
T ss_dssp CCCCEEEEESCGG-------------GC--HHHHHHHHHTTCEEEEECSG---G----GGTTCSEEEECCCCH---HHHH
T ss_pred CCCCEEEEEeCCC-------------Cc--HHHHHHHHHCCCEEEEECCH---H----HHhhCCEEEECCCCh---HHHH
Confidence 4568899985421 11 34789999999999999852 1 257899999999964 1222
Q ss_pred H---HHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 161 I---VEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 161 ~---~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
. .+.+.+...+.. +.+.||+|||.|
T Consensus 76 ~~~~~~~~~~~i~~~~-~~~~PilGIC~G 103 (219)
T 1q7r_A 76 RLIDRYGLMEPLKQFA-AAGKPMFGTCAG 103 (219)
T ss_dssp HHHHHTTCHHHHHHHH-HTTCCEEEETTH
T ss_pred HHhhhhHHHHHHHHHH-HcCCeEEEECHH
Confidence 1 111222222222 234699999975
No 9
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=98.25 E-value=4.3e-07 Score=75.88 Aligned_cols=67 Identities=12% Similarity=-0.014 Sum_probs=41.2
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHHH-HHHHHHHHHHHhCCCCcceEeeCC
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQIV-EKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~-~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
...+++++++|+.++++|.+.+.+++++ +.+|||+|+||.+- .|+.. ..+.+.++ +.+.||||||-|
T Consensus 38 ~~i~~~l~~~G~~~~vv~~~~~~~~l~~--~~~dglil~Gg~~~---~~~~~~~~~~~~~~----~~~~PilGIC~G 105 (218)
T 2vpi_A 38 KVIDRRVRELFVQSEIFPLETPAFAIKE--QGFRAIIISGGPNS---VYAEDAPWFDPAIF----TIGKPVLGICYG 105 (218)
T ss_dssp HHHHHHHHHTTCCEEEECTTCCHHHHHH--HTCSEEEEEC------------CCCCCGGGG----TSSCCEEEETHH
T ss_pred HHHHHHHHHCCCEEEEEECCCChHHHhh--cCCCEEEECCCCcc---cccccchhHHHHHH----HcCCCEEEEcHH
Confidence 4677889999999999998776655543 67999999999741 12111 01111111 234699999965
No 10
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=98.18 E-value=1.2e-06 Score=79.85 Aligned_cols=68 Identities=13% Similarity=0.124 Sum_probs=48.2
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCC-CCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGW-AKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~-DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
.+|+++++++|+.++++|++.+.+++.+ ..+|||+|+||. |.. ....+..+.+++++. +.||||||-|
T Consensus 202 ~ni~r~L~~~G~~v~vvp~~~~~e~i~~--~~~DGliLsGGPgdp~--~~~~~~~~Ir~~~~~----~~PILGIClG 270 (379)
T 1a9x_B 202 RNILRMLVDRGCRLTIVPAQTSAEDVLK--MNPDGIFLSNGPGDPA--PCDYAITAIQKFLET----DIPVFGICLG 270 (379)
T ss_dssp HHHHHHHHHTTEEEEEEETTCCHHHHHT--TCCSEEEECCCSBCST--TCHHHHHHHHHHTTS----CCCEEEETHH
T ss_pred HHHHHHHHHCCCEEEEEeccCCHHHHhh--cCCCEEEEeCCCCChH--HHHHHHHHHHHHHHc----CCCEEEECch
Confidence 6799999999999999998765544432 369999999996 433 234444455555432 4699999944
No 11
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=98.17 E-value=1.3e-06 Score=71.52 Aligned_cols=65 Identities=15% Similarity=0.229 Sum_probs=43.2
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHHH---HHHHHHHHHHHhCCCCcceEeeCC
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQIV---EKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~---~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
.+++++++++|+.+++++.. ++ ++.+|||+|+|| .|..|++. +.+.+ .++.-.+.+.||+|||+|
T Consensus 33 ~~~~~~l~~~g~~~~~~~~~---~~----l~~~d~iil~GG---~~~~~~~~~~~~~~~~-~i~~~~~~g~PilGIC~G 100 (208)
T 2iss_D 33 REHVEALHKLGVETLIVKLP---EQ----LDMVDGLILPGG---ESTTMIRILKEMDMDE-KLVERINNGLPVFATCAG 100 (208)
T ss_dssp HHHHHHHHHTTCEEEEECSG---GG----GGGCSEEEECSS---CHHHHHHHHHHTTCHH-HHHHHHHTTCCEEEETHH
T ss_pred HHHHHHHHHCCCEEEEeCCh---HH----HhhCCEEEECCC---cHHHHHhhhhhhhHHH-HHHHHHHCCCeEEEECHH
Confidence 45788899999999988642 22 568999999999 35556531 11222 233222334699999987
No 12
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=98.15 E-value=2.3e-07 Score=75.38 Aligned_cols=68 Identities=15% Similarity=-0.008 Sum_probs=43.2
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHH-HHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQI-VEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~-~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
.+|+++++++|+.+++++... .++.+|||+|+||.+..+.+..- .+.+.+...++.+ .+.||+|||.|
T Consensus 16 ~~~~~~l~~~G~~~~~~~~~~-------~l~~~d~lil~G~g~~~~~~~~l~~~~~~~~i~~~~~-~~~PilGIC~G 84 (200)
T 1ka9_H 16 RSAAKALEAAGFSVAVAQDPK-------AHEEADLLVLPGQGHFGQVMRAFQESGFVERVRRHLE-RGLPFLGICVG 84 (200)
T ss_dssp HHHHHHHHHTTCEEEEESSTT-------SCSSCSEEEECCCSCHHHHHHTTSSSCTHHHHHHHHH-TTCCEEECTHH
T ss_pred HHHHHHHHHCCCeEEEecChH-------HcccCCEEEECCCCcHHHHHHHHHhcCHHHHHHHHHH-cCCeEEEEcHH
Confidence 567899999999999987421 25689999999977644322110 0112233333222 23799999975
No 13
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=98.12 E-value=2.2e-06 Score=69.09 Aligned_cols=65 Identities=17% Similarity=0.272 Sum_probs=42.0
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHHHH---HHHHHHHHHHhCCCCcceEeeCC
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQIVE---KIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~---~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
..|+++++++|+.+++++.. + .++.+|||+|+||. +..|+..+ .+.+...+.. +.+.||+|||+|
T Consensus 14 ~~~~~~l~~~g~~~~~~~~~---~----~l~~~d~iil~GG~---~~~~~~~~~~~~~~~~i~~~~-~~~~pilgIC~G 81 (196)
T 2nv0_A 14 REHIHAIEACGAAGLVVKRP---E----QLNEVDGLILPGGE---STTMRRLIDTYQFMEPLREFA-AQGKPMFGTCAG 81 (196)
T ss_dssp HHHHHHHHHTTCEEEEECSG---G----GGGGCSEEEECCSC---HHHHHHHHHHTTCHHHHHHHH-HTTCCEEEETHH
T ss_pred HHHHHHHHHCCCEEEEeCCh---H----HHhhCCEEEECCCC---hhhHHHHhhhHHHHHHHHHHH-HCCCcEEEECHH
Confidence 34678899999999988742 2 25789999999995 23343221 1122222222 334699999986
No 14
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=98.11 E-value=1e-06 Score=74.33 Aligned_cols=69 Identities=14% Similarity=0.053 Sum_probs=42.4
Q ss_pred HHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCC-CC-CCc---ChHHHHHHHHHHHHHHhCCCCcceEeeC
Q 028817 112 SYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGW-AK-KGL---YFQIVEKIFKHEAIYERKKQSLVHGITG 185 (203)
Q Consensus 112 sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~-DV-dP~---yY~~~~~I~~~AL~~n~~g~~PV~Gic~ 185 (203)
.+.+++++.|..++++++.. .+.+.+.++.+|||+|+||. +. +.. +......+.+.+++. +.||||||-
T Consensus 28 ~i~~~l~~~G~~v~v~~~~~-~~~~~~~l~~~Dglil~GG~~~~~~~~~~~~l~~~~~~i~~~~~~----~~PiLGIC~ 101 (239)
T 1o1y_A 28 MMEDIFREKNWSFDYLDTPK-GEKLERPLEEYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEEILKK----EIPFLGICL 101 (239)
T ss_dssp HHHHHHHHTTCEEEEECGGG-TCCCSSCGGGCSEEEECCCSCCTTCTTTCTHHHHHHHHHHHHHHH----TCCEEEETH
T ss_pred HHHHHHHhCCCcEEEeCCcC-ccccccchhcCCEEEECCCCccccCCccChhHHHHHHHHHHHHHC----CCCEEEEch
Confidence 34456677787777677642 22334457899999999996 22 111 112344555555543 379999995
No 15
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=98.10 E-value=7.4e-06 Score=66.43 Aligned_cols=75 Identities=12% Similarity=0.141 Sum_probs=46.5
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHHHHHHHHH-hcCEEEeCCCCC-CCCcChHHHHHHHHHHHHHHhCCCCcceEee----
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEEILFEKLK-LVNGVLLTGGWA-KKGLYFQIVEKIFKHEAIYERKKQSLVHGIT---- 184 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld-~VDGVLLTGG~D-VdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic---- 184 (203)
..++++++++|+.+++++.... .++++.+ .+|||+|+||.. .... .... .....++.. +.+.||||||
T Consensus 15 ~~~~~~l~~~G~~~~v~~~~~~--~~~~~~~~~~dglil~gG~~~~~~~--~~~~-~~~~~i~~~-~~~~PvLGIC~G~Q 88 (195)
T 1qdl_B 15 YNIAQIVGELGSYPIVIRNDEI--SIKGIERIDPDRLIISPGPGTPEKR--EDIG-VSLDVIKYL-GKRTPILGVCLGHQ 88 (195)
T ss_dssp HHHHHHHHHTTCEEEEEETTTS--CHHHHHHHCCSEEEECCCSSCTTSH--HHHT-THHHHHHHH-TTTSCEEEETHHHH
T ss_pred HHHHHHHHhCCCEEEEEeCCCC--CHHHHhhCCCCEEEECCCCCChhhh--hhhh-HHHHHHHHh-cCCCcEEEEehHHH
Confidence 5778899999999999997531 1223332 699999999854 2221 1111 112223332 4456999999
Q ss_pred ------CCccccc
Q 028817 185 ------GDVVQKD 191 (203)
Q Consensus 185 ------~~~~~~~ 191 (203)
||++.++
T Consensus 89 lL~~~~gg~v~~~ 101 (195)
T 1qdl_B 89 AIGYAFGAKIRRA 101 (195)
T ss_dssp HHHHHTTCEEEEE
T ss_pred HHHHHhCCEEecc
Confidence 6666654
No 16
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=98.04 E-value=1.2e-06 Score=82.72 Aligned_cols=83 Identities=17% Similarity=0.140 Sum_probs=52.6
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHHH
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQIV 162 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~ 162 (203)
+|.|+|+... .+ . . .+|+++++++|+.+++++... . ..++.+|||+|+||.+.++. +...
T Consensus 4 m~~I~Iid~~-~g---------~---~-~~~~~~l~~~G~~~~vv~~~~---~--~~l~~~DglILpGgG~~~~~-~~~l 63 (555)
T 1jvn_A 4 MPVVHVIDVE-SG---------N---L-QSLTNAIEHLGYEVQLVKSPK---D--FNISGTSRLILPGVGNYGHF-VDNL 63 (555)
T ss_dssp SCEEEEECCS-CS---------C---C-HHHHHHHHHTTCEEEEESSGG---G--CCSTTCSCEEEEECSCHHHH-HHHH
T ss_pred CCEEEEEECC-CC---------C---H-HHHHHHHHHCCCEEEEECCcc---c--cccccCCEEEECCCCchHhH-hhhh
Confidence 5789998532 11 1 1 478899999999999988422 1 24678999999997664432 1111
Q ss_pred --HHHHHHHHHHHhCCCCcceEeeCC
Q 028817 163 --EKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 163 --~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
+.+.+...+.. +.+.||||||.|
T Consensus 64 ~~~~~~~~i~~~~-~~g~PiLGIC~G 88 (555)
T 1jvn_A 64 FNRGFEKPIREYI-ESGKPIMGIXVG 88 (555)
T ss_dssp HHTTCHHHHHHHH-HTTCCEEEEEHH
T ss_pred hhccHHHHHHHHH-HcCCcEEEEchh
Confidence 12333333332 234699999986
No 17
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=98.00 E-value=1.5e-06 Score=70.31 Aligned_cols=68 Identities=21% Similarity=0.188 Sum_probs=44.0
Q ss_pred HHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCc-C---hHHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 112 SYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGL-Y---FQIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 112 sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~-y---Y~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
.++++++++|+.+++++..+ .++.+|||+|+||.+.... . +...+.+.+...+..++ ..||+|||.|.
T Consensus 18 ~~~~~l~~~g~~~~~~~~~~-------~~~~~d~lil~Gg~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~pilgIC~G~ 89 (213)
T 3d54_D 18 DAYHALEINGFEPSYVGLDD-------KLDDYELIILPGGFSYGDYLRPGAVAAREKIAFEIAKAAER-GKLIMGICNGF 89 (213)
T ss_dssp HHHHHHHTTTCEEEEECTTC-------CCSSCSEEEECEECGGGGCSSTTHHHHTSTTHHHHHHHHHH-TCEEEECHHHH
T ss_pred HHHHHHHHCCCEEEEEecCC-------CcccCCEEEECCCCchhhhhccccccccHHHHHHHHHHHHC-CCEEEEECHHH
Confidence 56889999999999998642 3578999999999864221 1 22222233333333222 36999999863
No 18
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=97.99 E-value=1.9e-05 Score=63.66 Aligned_cols=70 Identities=13% Similarity=0.173 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcC--EEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEee
Q 028817 109 IAASYVKFVESAGARVIPLIYNEPEEILFEKLKLVN--GVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGIT 184 (203)
Q Consensus 109 I~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VD--GVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic 184 (203)
....+++++++.|+.+++++...+.+++.+.+...| +++|+||... |.-.+....+.+ +. +.+.||||||
T Consensus 12 ~~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~~~~~~iil~gGpg~-~~~~~~~~~l~~----~~-~~~~PilGIC 83 (192)
T 1i1q_B 12 FTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPVLMLSPGPGV-PSEAGCMPELLT----RL-RGKLPIIGIC 83 (192)
T ss_dssp SHHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTTCSSEEEEECCCSSC-GGGSTTHHHHHH----HH-BTTBCEEEET
T ss_pred HHHHHHHHHHHCCCeEEEEECCCCHHHHHHHhhhccCCeEEECCCCcC-chhCchHHHHHH----HH-hcCCCEEEEC
Confidence 357889999999999999998766566666666544 6777777532 111122223332 22 3447999999
No 19
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=97.98 E-value=4.9e-06 Score=67.26 Aligned_cols=66 Identities=9% Similarity=0.022 Sum_probs=41.4
Q ss_pred HHHHHHHHHCC-----CeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHHHH--HHHHHHHHHHhCCCCcceEe
Q 028817 111 ASYVKFVESAG-----ARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQIVE--KIFKHEAIYERKKQSLVHGI 183 (203)
Q Consensus 111 ~sYVkaVe~AG-----A~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~--~I~~~AL~~n~~g~~PV~Gi 183 (203)
.+|+++++++| +.+++++... + +.+|||+||||.+.... ....+ .+.+...+..+ .+.|||||
T Consensus 14 ~s~~~~l~~~G~~~~~~~~~~~~~~~------~--~~~dglilpG~g~~~~~-~~~l~~~~~~~~i~~~~~-~~~PilGI 83 (201)
T 1gpw_B 14 MNLYRGVKRASENFEDVSIELVESPR------N--DLYDLLFIPGVGHFGEG-MRRLRENDLIDFVRKHVE-DERYVVGV 83 (201)
T ss_dssp HHHHHHHHHHSTTBSSCEEEEECSCC------S--SCCSEEEECCCSCSHHH-HHHHHHTTCHHHHHHHHH-TTCEEEEE
T ss_pred HHHHHHHHHcCCCCCceEEEEECCCc------c--cCCCEEEECCCCcHHHH-HHHHHhhCHHHHHHHHHH-cCCeEEEE
Confidence 77888999999 7888777422 2 67899999997552111 11111 13333333333 34699999
Q ss_pred eCC
Q 028817 184 TGD 186 (203)
Q Consensus 184 c~~ 186 (203)
|.|
T Consensus 84 C~G 86 (201)
T 1gpw_B 84 CLG 86 (201)
T ss_dssp THH
T ss_pred Chh
Confidence 987
No 20
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=97.96 E-value=1.8e-05 Score=68.17 Aligned_cols=90 Identities=12% Similarity=0.049 Sum_probs=50.2
Q ss_pred CEEEEcCCCC-CCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCH-H-H----HHHHHHhcCEEEeCCCCCCCC
Q 028817 84 PVIGILSHPG-DGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPE-E-I----LFEKLKLVNGVLLTGGWAKKG 156 (203)
Q Consensus 84 PVIGIta~~~-~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~-e-~----l~~~Ld~VDGVLLTGG~DVdP 156 (203)
+.|+|++... . +.+ +...+.....++....|+.+.++..+... + . +++.++.+|||+|+||..- +
T Consensus 9 ~~Iaivg~y~~~------~~d-ny~S~~~aL~~~g~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~dgiil~GG~~~-~ 80 (273)
T 2w7t_A 9 VRIAFVGKYLQD------AGD-TYFSVLQCFEHCQIALQVRLDILYVDSEELEGPNADEARKALLGCDGIFVPGGFGN-R 80 (273)
T ss_dssp EEEEEEECCHHH------HTT-TTHHHHHHHHHHHHHHTCCEEEEEEEGGGGSSTTTHHHHHHHHTCSEEEECCCCTT-T
T ss_pred CEEEEEeCCCcC------Cch-HHHHHHHHHHHHHHhcCCceEEeccChhhcccccchhHHHHHhhCCEEEecCCCCC-c
Confidence 7899986541 0 001 11222233333344556667776654321 0 1 5567899999999999532 2
Q ss_pred cChHHHHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 157 LYFQIVEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 157 ~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
.......+.+.+++. +.||||||-|
T Consensus 81 -~~~~~~~~i~~~~~~----~~PilGIC~G 105 (273)
T 2w7t_A 81 -GVDGKCAAAQVARMN----NIPYFGVXLG 105 (273)
T ss_dssp -THHHHHHHHHHHHHH----TCCEEEETHH
T ss_pred -CchhHHHHHHHHHHC----CCcEEEECcC
Confidence 222333445555543 3799999954
No 21
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=97.85 E-value=3.7e-05 Score=62.35 Aligned_cols=65 Identities=12% Similarity=0.014 Sum_probs=39.8
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCc-ChHHHHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGL-YFQIVEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~-yY~~~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
++..++++++|+.++++. +.+ .++.+|||+||||.+-... .......+.+.++ +...||||||-|
T Consensus 16 ~si~~al~~~G~~~~v~~---~~~----~l~~~D~lilPG~g~~~~~~~~~~~~~~i~~~~----~~~~PvlGIClG 81 (211)
T 4gud_A 16 SSVKFAIERLGYAVTISR---DPQ----VVLAADKLFLPGVGTASEAMKNLTERDLIELVK----RVEKPLLGICLG 81 (211)
T ss_dssp HHHHHHHHHTTCCEEEEC---CHH----HHHHCSEEEECCCSCHHHHHHHHHHTTCHHHHH----HCCSCEEEETHH
T ss_pred HHHHHHHHHCCCEEEEEC---CHH----HHhCCCEEEECCCCCHHHHHHHHHhcChHHHHH----HcCCCEEEEchh
Confidence 567789999999998763 443 3677899999997541100 0001111222222 234599999965
No 22
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=97.74 E-value=1.9e-05 Score=73.90 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=34.4
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCC
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWA 153 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~D 153 (203)
+.++++|+++|+.+.++|++.+.++++++ ..|||+|+||..
T Consensus 21 ~~i~r~lr~~G~~~~i~p~~~~~~~i~~~--~~dgiILsGGp~ 61 (525)
T 1gpm_A 21 QLVARRVRELGVYCELWAWDVTEAQIRDF--NPSGIILSGGPE 61 (525)
T ss_dssp HHHHHHHHHTTCEEEEEESCCCHHHHHHH--CCSEEEECCCSS
T ss_pred HHHHHHHHHCCCEEEEEECCCCHHHHhcc--CCCEEEECCcCc
Confidence 77889999999999999998777766554 579999999963
No 23
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=97.72 E-value=1.2e-05 Score=74.74 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=35.7
Q ss_pred chhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCC
Q 028817 106 ASYIAASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWA 153 (203)
Q Consensus 106 ~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~D 153 (203)
.+|. +.++++|+++|+.+.++|++.+.++++++ ..|||+|+||.+
T Consensus 9 ~~~~-~~i~r~l~~~G~~~~i~p~~~~~~~i~~~--~~dgiIlsGGp~ 53 (503)
T 2ywb_A 9 SQYT-RLIARRLRELRAFSLILPGDAPLEEVLKH--RPQALILSGGPR 53 (503)
T ss_dssp CTTH-HHHHHHHHTTTCCEEEEETTCCHHHHHTT--CCSEEEECCCSS
T ss_pred CcHH-HHHHHHHHHCCCEEEEEECCCCHHHHHhc--CCCEEEECCCCc
Confidence 3455 78889999999999999997666655443 469999999974
No 24
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=97.68 E-value=0.00014 Score=62.29 Aligned_cols=71 Identities=11% Similarity=0.152 Sum_probs=47.7
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCC-CC--CcChHHHHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWA-KK--GLYFQIVEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~D-Vd--P~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
..+.+++++.|..+.++.....+. +.+-++.+|||+|+||.. +. -.+...+..+.+.+++.+ .||+|||-|
T Consensus 18 ~~i~~~l~~~G~~v~v~~~~~~~~-~p~~~~~~d~lIl~GGp~~~~d~~~~~~~~~~~i~~~~~~~----~PvlGIC~G 91 (250)
T 3m3p_A 18 GHFGDFLAGEHIPFQVLRMDRSDP-LPAEIRDCSGLAMMGGPMSANDDLPWMPTLLALIRDAVAQR----VPVIGHCLG 91 (250)
T ss_dssp HHHHHHHHHTTCCEEEEEGGGTCC-CCSCGGGSSEEEECCCSSCTTSCCTTHHHHHHHHHHHHHHT----CCEEEETHH
T ss_pred HHHHHHHHHCCCeEEEEeccCCCc-CcCccccCCEEEECCCCCcccccchHHHHHHHHHHHHHHcC----CCEEEECHH
Confidence 556677889999888887532210 111267899999999973 32 234456667777776653 799999954
No 25
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=97.66 E-value=1.9e-05 Score=68.63 Aligned_cols=70 Identities=17% Similarity=0.143 Sum_probs=39.8
Q ss_pred HHHHHHHHHCCC----eEEEeecCC----------CHHHHH---HHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHH
Q 028817 111 ASYVKFVESAGA----RVIPLIYNE----------PEEILF---EKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYE 173 (203)
Q Consensus 111 ~sYVkaVe~AGA----~PV~LP~~~----------~~e~l~---~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n 173 (203)
.+++++++++|+ .+++..... +.+.++ ++++.+|||+|+||..- + .......+.+.+++
T Consensus 42 ~si~~~L~~~G~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgiil~GG~~~-~-~~~~~~~~i~~~~~-- 117 (289)
T 2v4u_A 42 ASVFKALEHSALAINHKLNLMYIDSIDLEKITETEDPVKFHEAWQKLCKADGILVPGGFGI-R-GTLGKLQAISWART-- 117 (289)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEEEEGGGGSHHHHHHCHHHHHHHHHHHHHCSEEEECSCCSS-T-THHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhhhhhCCceEEEEechhhcccccccCChhhhhhHHHHHhhCCEEEecCCCCc-h-hHHHHHHHHHHHHH--
Confidence 377788887764 344444321 112222 25889999999999643 2 22223333333332
Q ss_pred hCCCCcceEeeCC
Q 028817 174 RKKQSLVHGITGD 186 (203)
Q Consensus 174 ~~g~~PV~Gic~~ 186 (203)
.+.||||||.|
T Consensus 118 --~~~PilGIC~G 128 (289)
T 2v4u_A 118 --KKIPFLGVXLG 128 (289)
T ss_dssp --TTCCEEEETHH
T ss_pred --cCCcEEEECcc
Confidence 23799999943
No 26
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=97.39 E-value=5.2e-05 Score=71.70 Aligned_cols=68 Identities=18% Similarity=0.120 Sum_probs=46.4
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCC-C-CCcChHHHHHHHHHHHHHHhCCCCcceEee
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWA-K-KGLYFQIVEKIFKHEAIYERKKQSLVHGIT 184 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~D-V-dP~yY~~~~~I~~~AL~~n~~g~~PV~Gic 184 (203)
+..+++++++|+.+.++|++.+.+++.+ ...|||+|+||.. + +.......+.+++.+++ ...||||||
T Consensus 21 ~~I~r~lre~Gv~~eiv~~~~~~~~i~~--~~~dgIIlsGGp~s~~~~~~~~~~~~l~~~a~~----~g~PvLGIC 90 (556)
T 3uow_A 21 HLIVKRLNNIKIFSETKDYGVELKDIKD--MNIKGVILSGGPYSVTEAGSPHLKKEVFEYFLE----KKIPIFGIC 90 (556)
T ss_dssp HHHHHHHHHTTCCEEEEETTCCGGGTTT--SCEEEEEECCCSCCTTSTTCCCCCHHHHHHHHH----TTCCEEEET
T ss_pred HHHHHHHHHCCCeEEEEECCCCHHHHhh--cCCCEEEECCCCCcccccCCcchhHHHHHHhhh----cCCCEEEEC
Confidence 5667889999999999998766554432 2789999999963 2 11111223456666554 347999999
No 27
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.34 E-value=0.00026 Score=58.91 Aligned_cols=96 Identities=18% Similarity=0.000 Sum_probs=59.6
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecC-CCHHHHHHHHHhcCEEEeCCCCCCCCcChHH
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYN-EPEEILFEKLKLVNGVLLTGGWAKKGLYFQI 161 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~-~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~ 161 (203)
.+.|++........ ....| .+++.+++++.|+.+..+... .+.++..+.++.+|+|+|+||.-..=...=.
T Consensus 27 ~~~i~~Ip~As~~~-------~~~~~-~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~ad~I~l~GG~~~~l~~~L~ 98 (206)
T 3l4e_A 27 GKTVTFIPTASTVE-------EVTFY-VEAGKKALESLGLLVEELDIATESLGEITTKLRKNDFIYVTGGNTFFLLQELK 98 (206)
T ss_dssp TCEEEEECGGGGGC-------SCCHH-HHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHHSSEEEECCSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCC-------CHHHH-HHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHhCCEEEECCCCHHHHHHHHH
Confidence 36777765432110 01223 367889999999988877532 2556777889999999999986421101112
Q ss_pred HHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 162 VEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 162 ~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
...+.+...++..+| .|++|||-|.
T Consensus 99 ~~gl~~~l~~~~~~G-~p~~G~sAGa 123 (206)
T 3l4e_A 99 RTGADKLILEEIAAG-KLYIGESAGA 123 (206)
T ss_dssp HHTHHHHHHHHHHTT-CEEEEETHHH
T ss_pred HCChHHHHHHHHHcC-CeEEEECHHH
Confidence 334444444444444 5999999884
No 28
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=97.30 E-value=9.9e-05 Score=61.64 Aligned_cols=71 Identities=17% Similarity=0.232 Sum_probs=45.2
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCC-C-----CCcChHH--HHHHHHHHHHHHhCCCCcceE
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWA-K-----KGLYFQI--VEKIFKHEAIYERKKQSLVHG 182 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~D-V-----dP~yY~~--~~~I~~~AL~~n~~g~~PV~G 182 (203)
..+.+++++.|..+.++.....+. +.+-++.+|||+++||.. . +-.+... +..+.+.+++. ..||||
T Consensus 15 g~~~~~l~~~g~~~~~~~~~~~~~-~p~~~~~~d~lii~GGp~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~PvLG 89 (236)
T 3l7n_A 15 GAYLAWAALRGHDVSMTKVYRYEK-LPKDIDDFDMLILMGGPQSPSSTKKEFPYYDAQAEVKLIQKAAKS----EKIIVG 89 (236)
T ss_dssp HHHHHHHHHTTCEEEEEEGGGTCC-CCSCGGGCSEEEECCCSSCTTCCTTTCTTCCHHHHHHHHHHHHHT----TCEEEE
T ss_pred hHHHHHHHHCCCeEEEEeeeCCCC-CCCCccccCEEEECCCCCCcccccccCcccchHHHHHHHHHHHHc----CCCEEE
Confidence 455677888999887777643211 111367899999999963 2 1123322 55666666543 379999
Q ss_pred eeCC
Q 028817 183 ITGD 186 (203)
Q Consensus 183 ic~~ 186 (203)
||.|
T Consensus 90 IClG 93 (236)
T 3l7n_A 90 VCLG 93 (236)
T ss_dssp ETHH
T ss_pred EchH
Confidence 9976
No 29
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=97.28 E-value=0.0002 Score=68.22 Aligned_cols=89 Identities=18% Similarity=0.116 Sum_probs=49.0
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHH----CCCeEEEeecCCCH---HHHHHHHHhcCEEEeCCCCC
Q 028817 81 NNRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVES----AGARVIPLIYNEPE---EILFEKLKLVNGVLLTGGWA 153 (203)
Q Consensus 81 ~~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~----AGA~PV~LP~~~~~---e~l~~~Ld~VDGVLLTGG~D 153 (203)
..++.||+.+.... . ...| .+|.++++. .|+.+.+++.+... +.++++++.+|||||+||..
T Consensus 298 ~~~v~I~ivgkyv~------l---~D~y--~Sv~~aL~~~g~~~g~~v~I~~~d~~~~~~~~~~~~L~~~DGIILpGGfG 366 (550)
T 1vco_A 298 ERTVKIAIAGKYVK------M---PDAY--LSLLEALRHAGIKNRARVEVKWVDAESLEAADLEEAFRDVSGILVPGGFG 366 (550)
T ss_dssp SEEEEEEEEESCC------------CTT--HHHHHHHHHHHHHTTEEEEEEEEEGGGC--CCHHHHTTTCSCEEECCCCS
T ss_pred CCceEEcccCCeEE------E---EecH--HHHHHHHHHHHHHcCCeEEEEEeCccccccchHHHHHhcCCEEEECCCCC
Confidence 34578887655321 0 1112 234455544 46677777654321 23667789999999999953
Q ss_pred CCCcChHHHHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 154 KKGLYFQIVEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 154 VdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
- +..-+ ...+.+++++ .+.|+||||=|
T Consensus 367 d-~~~~g-~i~~ir~a~e----~~iPiLGICLG 393 (550)
T 1vco_A 367 V-RGIEG-KVRAAQYARE----RKIPYLGICLG 393 (550)
T ss_dssp S-TTHHH-HHHHHHHHHH----TTCCEEEETHH
T ss_pred C-cchhh-hHHHHHHHHH----CCCcEEEECcC
Confidence 2 22211 2233333332 34799999943
No 30
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=97.13 E-value=3.4e-05 Score=72.28 Aligned_cols=44 Identities=20% Similarity=0.256 Sum_probs=33.8
Q ss_pred hhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCC
Q 028817 107 SYIAASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWA 153 (203)
Q Consensus 107 syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~D 153 (203)
+|. +.+.++|+++|+.+.++|++.+.+++.++ ..|||+|+||..
T Consensus 21 ~~~-~~i~r~lr~~Gv~~~i~p~~~~~~~i~~~--~~dgIILsGGp~ 64 (527)
T 3tqi_A 21 QYA-QLIARRVREIGVYCELMPCDIDEETIRDF--NPHGIILSGGPE 64 (527)
T ss_dssp TTH-HHHHHHHHHHTCEEEEEETTCCSSSSTTT--CCSEEEECCCCC
T ss_pred ccH-HHHHHHHHHCCCeEEEEECCCCHHHHHhc--CCCEEEECCcCc
Confidence 344 67788999999999999987665544332 569999999964
No 31
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=97.09 E-value=0.00064 Score=65.62 Aligned_cols=66 Identities=11% Similarity=-0.006 Sum_probs=47.5
Q ss_pred hHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCC-CCCCc---ChHHHHHHHHHHHHHHhCCCCcceEee
Q 028817 110 AASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGW-AKKGL---YFQIVEKIFKHEAIYERKKQSLVHGIT 184 (203)
Q Consensus 110 ~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~-DVdP~---yY~~~~~I~~~AL~~n~~g~~PV~Gic 184 (203)
..++++++++.|+.+.+++++.+.+ +...|||||+||. +..-. +....+.+.+.+++.+ .||||||
T Consensus 459 ~~~l~~~l~~~G~~v~Vv~~d~~~~-----~~~~DgIIlsGGPg~p~d~~~p~i~~~~~lI~~a~~~~----iPiLGIC 528 (645)
T 3r75_A 459 TAMIAQQLSSLGLATEVCGVHDAVD-----LARYDVVVMGPGPGDPSDAGDPRIARLYAWLRHLIDEG----KPFMAVC 528 (645)
T ss_dssp HHHHHHHHHHTTCEEEEEETTCCCC-----GGGCSEEEECCCSSCTTCTTSHHHHHHHHHHHHHHHHT----CCEEEET
T ss_pred HHHHHHHHHHCCCEEEEEECCCccc-----ccCCCEEEECCCCCChhhhhhhhHHHHHHHHHHHHHCC----CCEEEEC
Confidence 3678889999999999999875432 5678999999996 33221 2233456666666553 7999999
No 32
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=97.07 E-value=0.00062 Score=57.10 Aligned_cols=91 Identities=10% Similarity=0.089 Sum_probs=54.1
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChH--
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQ-- 160 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~-- 160 (203)
++.|+|....... .....-.+++.+++++.|+.++.+....+ ..+.++.+|||+|+||.-- ...+
T Consensus 31 ~~~i~iI~~a~~~--------~~~~~~~~~~~~al~~lG~~~~~v~~~~d---~~~~l~~ad~I~lpGG~~~--~~~~~l 97 (229)
T 1fy2_A 31 RRSAVFIPFAGVT--------QTWDEYTDKTAEVLAPLGVNVTGIHRVAD---PLAAIEKAEIIIVGGGNTF--QLLKES 97 (229)
T ss_dssp CCEEEEECTTCCS--------SCHHHHHHHHHHHHGGGTCEEEETTSSSC---HHHHHHHCSEEEECCSCHH--HHHHHH
T ss_pred CCeEEEEECCCCC--------CCHHHHHHHHHHHHHHCCCEEEEEecccc---HHHHHhcCCEEEECCCcHH--HHHHHH
Confidence 5778877554211 01222346778889999998888854322 3356888999999998631 0001
Q ss_pred HHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 161 IVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 161 ~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
....+.+...++-.+| .|++|||-|.
T Consensus 98 ~~~gl~~~l~~~~~~G-~p~~G~sAG~ 123 (229)
T 1fy2_A 98 RERGLLAPMADRVKRG-ALYIGWSAGA 123 (229)
T ss_dssp HHTTCHHHHHHHHHTT-CEEEEETHHH
T ss_pred HHCChHHHHHHHHHcC-CEEEEECHHH
Confidence 1122333333343344 7999999774
No 33
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=96.96 E-value=0.0002 Score=69.69 Aligned_cols=38 Identities=13% Similarity=0.106 Sum_probs=31.0
Q ss_pred HHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCC
Q 028817 114 VKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWA 153 (203)
Q Consensus 114 VkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~D 153 (203)
.+.++++|+.+.++|++.+.+++.+ ..+|||+|+||.+
T Consensus 46 ar~lre~Gv~~~ivp~~~~~e~i~~--~~~dGIILsGGp~ 83 (697)
T 2vxo_A 46 DRRVRELFVQSEIFPLETPAFAIKE--QGFRAIIISGGPN 83 (697)
T ss_dssp HHHHHHTTCCEEEEETTCCHHHHHH--HTCSEEEEEECC-
T ss_pred HHHHHHCCCEEEEEECCCCHHHHhh--cCCCEEEECCCCC
Confidence 3678999999999999877666643 6799999999975
No 34
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=96.86 E-value=0.00048 Score=65.60 Aligned_cols=69 Identities=16% Similarity=0.120 Sum_probs=41.9
Q ss_pred hHHHHHHHHHCCC----eEEEeecCCCHHHHH----HHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcce
Q 028817 110 AASYVKFVESAGA----RVIPLIYNEPEEILF----EKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVH 181 (203)
Q Consensus 110 ~~sYVkaVe~AGA----~PV~LP~~~~~e~l~----~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~ 181 (203)
-.+++++++.+|+ .+.+++.+ .++++ +.++.+|||+|+||..- |.. .....+.+++++ .+.|||
T Consensus 305 y~Si~~aL~~~G~~~~~~V~i~~~d--~e~i~~~~~~~l~~~DGIilsGGpg~-~~~-~g~~~~i~~a~~----~~~PiL 376 (545)
T 1s1m_A 305 YKSVIEALKHGGLKNRVSVNIKLID--SQDVETRGVEILKGLDAILVPGGFGY-RGV-EGMITTARFARE----NNIPYL 376 (545)
T ss_dssp GHHHHHHHHHHHHHHTEEEEEEEEE--HHHHHHHCTTTTTTCSEEEECCCCSS-TTH-HHHHHHHHHHHH----TTCCEE
T ss_pred HHHHHHHHHHhCcccCCeEEEccCC--HHHhhhhhhhhhhcCCEEEECCCCCC-ccc-hhhHHHHHHHHH----CCCcEE
Confidence 3678888888775 34455442 33333 44788999999999632 222 223334444443 247999
Q ss_pred EeeCC
Q 028817 182 GITGD 186 (203)
Q Consensus 182 Gic~~ 186 (203)
|||=|
T Consensus 377 GIClG 381 (545)
T 1s1m_A 377 GICLG 381 (545)
T ss_dssp EETHH
T ss_pred EECCh
Confidence 99944
No 35
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*
Probab=96.47 E-value=0.0035 Score=65.08 Aligned_cols=91 Identities=16% Similarity=0.118 Sum_probs=54.7
Q ss_pred CCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCC--CCc-C
Q 028817 82 NRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAK--KGL-Y 158 (203)
Q Consensus 82 ~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DV--dP~-y 158 (203)
.||.|+|+.-++.. ...++.++++++|+.++.++... ...-.+.|+.+|||+|+||..- .+. -
T Consensus 1046 ~~pkVaIi~~~G~N-------------~~~~~~~A~~~aG~~~~~v~~~d-l~~~~~~l~~~d~lvlPGGfSygD~l~~g 1111 (1303)
T 3ugj_A 1046 ARPKVAVLREQGVN-------------SHVEMAAAFHRAGFDAIDVHMSD-LLGGRIGLGNFHALVACGGFSYGDVLGAG 1111 (1303)
T ss_dssp CCCEEEEEECTTCC-------------CHHHHHHHHHHTTCEEEEEEHHH-HHTTSCCGGGCSEEEECCSCGGGGTTSTT
T ss_pred CCCEEEEEecCCcC-------------CHHHHHHHHHHhCCceEEEeecc-cccCcccHhhCCEEEECCCCcchhhhccc
Confidence 58999998876532 23567789999999999887421 0000124789999999999521 111 0
Q ss_pred hH-HHHHHH----HHHHHH-HhCCCCcceEeeCC
Q 028817 159 FQ-IVEKIF----KHEAIY-ERKKQSLVHGITGD 186 (203)
Q Consensus 159 Y~-~~~~I~----~~AL~~-n~~g~~PV~Gic~~ 186 (203)
-. ..+.++ ..+++. ..+.+-||+|||=|
T Consensus 1112 ~~~a~~~l~~~~l~~~l~~~~~~~g~pvLGICnG 1145 (1303)
T 3ugj_A 1112 EGWAKSILFNHRVRDEFETFFHRPQTLALGVCNG 1145 (1303)
T ss_dssp HHHHHHHHTSHHHHHHHHHHHHSSSCEEEEETHH
T ss_pred hhHHHHHHhchhHHHHHHHHHHhCCCcEEEECHH
Confidence 00 112222 222333 33455699999965
No 36
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=95.66 E-value=0.015 Score=55.54 Aligned_cols=87 Identities=20% Similarity=0.125 Sum_probs=47.5
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHH----CCCeEEEeecCCCH---H--HHHHHHHhcCEEEeCCCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVES----AGARVIPLIYNEPE---E--ILFEKLKLVNGVLLTGGWA 153 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~----AGA~PV~LP~~~~~---e--~l~~~Ld~VDGVLLTGG~D 153 (203)
.-.||+.+-... ....| .+..++++. .++.+-+...+... + .+.+.|+.+|||+++||..
T Consensus 293 ~v~IalVGKY~~---------l~DaY--~Sv~eAL~hag~~~~~~V~I~wIds~~l~~~~~~~~~~L~~~DgIIlpGG~G 361 (535)
T 3nva_A 293 TINIALVGKYTK---------LKDSY--ISIKEAIYHASAYIGVRPKLIWIESTDLESDTKNLNEILGNVNGIIVLPGFG 361 (535)
T ss_dssp EEEEEEEESCTT---------SGGGG--HHHHHHHHHHHHHTTCEEEEEEEEGGGGCCSSSCCTTTTTSCSEEEECCCCS
T ss_pred eeEEEEEecCcC---------CchhH--HHHHHHHHHHHHHcCCCeEEEEecchhccccccchhhhccCCCEEEECCCCC
Confidence 346888766422 12333 344555554 45555554432210 0 0135689999999999963
Q ss_pred CCCcChHHHHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 154 KKGLYFQIVEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 154 VdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
. +.. .......+++++. +.|++|||.|
T Consensus 362 ~-~~~-~g~i~~ir~a~~~----~~PiLGIClG 388 (535)
T 3nva_A 362 S-RGA-EGKIKAIKYAREH----NIPFLGICFG 388 (535)
T ss_dssp S-TTH-HHHHHHHHHHHHH----TCCEEEETHH
T ss_pred C-ccH-HHHHHHHHHHHHc----CCcEEEECcc
Confidence 2 211 2223334444443 3799999965
No 37
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=94.38 E-value=0.036 Score=48.59 Aligned_cols=93 Identities=15% Similarity=0.191 Sum_probs=58.8
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCC-eEEEeecC----CCHHHHHHHHHhcCEEEeCCCCC--CC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGA-RVIPLIYN----EPEEILFEKLKLVNGVLLTGGWA--KK 155 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA-~PV~LP~~----~~~e~l~~~Ld~VDGVLLTGG~D--Vd 155 (203)
++.|.+.+..... .. ...+.|.+++++.|+ .+-.|... .+.+++.+.++.+|+|+|+||.- +-
T Consensus 56 ~~~I~~IptAs~~---------~~-~~~~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~~ad~I~v~GGnt~~l~ 125 (291)
T 3en0_A 56 DAIIGIIPSASRE---------PL-LIGERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVEQCTGIFMTGGDQLRLC 125 (291)
T ss_dssp GCEEEEECTTCSS---------HH-HHHHHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHHHCSEEEECCSCHHHHH
T ss_pred CCeEEEEeCCCCC---------hH-HHHHHHHHHHHHcCCCeeEEEEecCccccCCHHHHHHHhcCCEEEECCCCHHHHH
Confidence 3677776654321 12 234677788888999 44456542 12346677899999999999974 11
Q ss_pred CcChHHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 156 GLYFQIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 156 P~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
-.++ ...+.+...++..+|..|+.|+|-|.
T Consensus 126 ~~l~--~t~l~~~L~~~~~~G~~~~~GtSAGA 155 (291)
T 3en0_A 126 GLLA--DTPLMDRIRQRVHNGEISLAGTSAGA 155 (291)
T ss_dssp HHHT--TCHHHHHHHHHHHTTSSEEEEETHHH
T ss_pred HHHH--hCCHHHHHHHHHHCCCeEEEEeCHHH
Confidence 1111 23444555556667768999999884
No 38
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=93.61 E-value=0.18 Score=40.28 Aligned_cols=91 Identities=16% Similarity=0.111 Sum_probs=50.3
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCH--------------HHHHHH-HHhcCEEE
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPE--------------EILFEK-LKLVNGVL 147 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~--------------e~l~~~-Ld~VDGVL 147 (203)
...|+|+....-. ..-...-++.++++|..+.++-..... ..+++. .+..|+|+
T Consensus 23 ~~kV~ill~~g~~-----------~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~li 91 (193)
T 1oi4_A 23 SKKIAVLITDEFE-----------DSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALL 91 (193)
T ss_dssp CCEEEEECCTTBC-----------THHHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEE
T ss_pred CCEEEEEECCCCC-----------HHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCCChHHCCcccCCEEE
Confidence 3468887764211 111233456778889888777654321 011111 35689999
Q ss_pred eCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 148 LTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 148 LTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
++||... ........+.+...+...+ .-||.|||.|.
T Consensus 92 vpGG~~~--~~l~~~~~l~~~l~~~~~~-gk~i~aIC~G~ 128 (193)
T 1oi4_A 92 LPGGHSP--DYLRGDNRFVTFTRDFVNS-GKPVFAICHGP 128 (193)
T ss_dssp ECCBTHH--HHHTTSHHHHHHHHHHHHT-TCCEEEETTTH
T ss_pred ECCCcCH--HHhhhCHHHHHHHHHHHHc-CCEEEEECHHH
Confidence 9999532 1111123344444444433 35999999986
No 39
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=93.52 E-value=0.037 Score=48.82 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=34.3
Q ss_pred HHhcCEEEeCCCCC-C----CCcChHHHHHHHHHHHHHHhCCCCcceEeeCC
Q 028817 140 LKLVNGVLLTGGWA-K----KGLYFQIVEKIFKHEAIYERKKQSLVHGITGD 186 (203)
Q Consensus 140 Ld~VDGVLLTGG~D-V----dP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~ 186 (203)
.+.+||+|+|||.. . +-.|+.+.+.+++.+.+.. .|++|||=|
T Consensus 97 ~~~~DglIITGap~~~~~~ed~~yw~el~~li~~~~~~~----~~~lgIC~G 144 (301)
T 2vdj_A 97 NEKFDGLIITGAPVETLSFEEVDYWEELKRIMEYSKTNV----TSTLHICWG 144 (301)
T ss_dssp TSCEEEEEECCCTTTTSCGGGSTTHHHHHHHHHHHHHHE----EEEEEETHH
T ss_pred ccccCEEEECCCCCcCCCcccCchHHHHHHHHHHHHHcC----CcEEEEcHH
Confidence 46799999999973 2 3567789999999988644 699999933
No 40
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=93.20 E-value=0.043 Score=48.75 Aligned_cols=87 Identities=15% Similarity=0.096 Sum_probs=54.3
Q ss_pred CEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeE--EEeecC------CCHHHHHHH--------HHhcCEEE
Q 028817 84 PVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARV--IPLIYN------EPEEILFEK--------LKLVNGVL 147 (203)
Q Consensus 84 PVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~P--V~LP~~------~~~e~l~~~--------Ld~VDGVL 147 (203)
-.|||+-... ..--..+.+.+.+...+-.+ ..+... .+.+-+++. .+.+||+|
T Consensus 48 lkI~ILnlmp-----------~k~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglI 116 (312)
T 2h2w_A 48 LEILILNLMP-----------DKIKTEIQLLRLLGNTPLQVNVTLLYTETHKPKHTPIEHILKFYTTFSAVKDRKFDGFI 116 (312)
T ss_dssp EEEEEECCCS-----------SHHHHHHHHHHHHHSSSSCEEEEEECCSCCCCCSSCHHHHHHHCBCGGGTTTCCEEEEE
T ss_pred ceEEEEeCCC-----------CcCchHHHHHHHhcCCCCcEEEEEEEccCCCCCCccHHHHhhccCCcccccccCcCEEE
Confidence 3699987521 11234566677776655433 222221 122333332 36689999
Q ss_pred eCCCCC-C----CCcChHHHHHHHHHHHHHHhCCCCcceEeeC
Q 028817 148 LTGGWA-K----KGLYFQIVEKIFKHEAIYERKKQSLVHGITG 185 (203)
Q Consensus 148 LTGG~D-V----dP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~ 185 (203)
+|||.. . +-.|+.+.+.+++.+.+.. .|++|||=
T Consensus 117 ITGsP~~~~~~ed~~yw~el~~li~~~~~~~----~p~LGIC~ 155 (312)
T 2h2w_A 117 ITGAPVELLPFEEVDYWEELTEIMEWSRHNV----YSTMFICW 155 (312)
T ss_dssp ECCCSCTTSCGGGSTTHHHHHHHHHHHHHHE----EEEEEETH
T ss_pred ECCCCCCCCCCccCchHHHHHHHHHHHHHcC----CcEEEECH
Confidence 999973 2 3567788999999988644 69999993
No 41
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=91.07 E-value=0.34 Score=38.48 Aligned_cols=74 Identities=18% Similarity=0.099 Sum_probs=43.5
Q ss_pred HHHHHHHHCCCeEEEeecCCC-------------HHHHHHH--HHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCC
Q 028817 112 SYVKFVESAGARVIPLIYNEP-------------EEILFEK--LKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKK 176 (203)
Q Consensus 112 sYVkaVe~AGA~PV~LP~~~~-------------~e~l~~~--Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g 176 (203)
.-++.++++|..+.++-.... ...+++. .+..|.|+++||..- +........+.+...+...+|
T Consensus 21 ~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpGG~~~-~~~l~~~~~~~~~l~~~~~~g 99 (197)
T 2rk3_A 21 IPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLG-AQNLSESAAVKEILKEQENRK 99 (197)
T ss_dssp HHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEECCCHHH-HHHHHHCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEECCCchh-HHHhhhCHHHHHHHHHHHHcC
Confidence 344667888888777654321 1123333 267899999999521 111223344555555554433
Q ss_pred CCcceEeeCCc
Q 028817 177 QSLVHGITGDV 187 (203)
Q Consensus 177 ~~PV~Gic~~~ 187 (203)
-+|.+||.|.
T Consensus 100 -k~i~aiC~G~ 109 (197)
T 2rk3_A 100 -GLIATICAGP 109 (197)
T ss_dssp -CEEEEETTTH
T ss_pred -CEEEEECHHH
Confidence 4999999987
No 42
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=90.29 E-value=0.12 Score=41.57 Aligned_cols=72 Identities=18% Similarity=0.133 Sum_probs=43.1
Q ss_pred HHHHHHHCCCeEEEeecCCC------------HHHHHHH-HHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCc
Q 028817 113 YVKFVESAGARVIPLIYNEP------------EEILFEK-LKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSL 179 (203)
Q Consensus 113 YVkaVe~AGA~PV~LP~~~~------------~e~l~~~-Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~P 179 (203)
-++.++++|..+.++-.... +..++++ .+..|+|++|||.. +........+.+...+..++| .+
T Consensus 27 p~~~l~~ag~~V~~~s~~~~~v~~~~G~~v~~d~~l~~v~~~~yD~liiPGG~g--~~~l~~~~~~~~~l~~~~~~~-k~ 103 (177)
T 4hcj_A 27 SKKIFESAGYKTKVSSTFIGTAQGKLGGMTNIDLLFSEVDAVEFDAVVFVGGIG--CITLWDDWRTQGLAKLFLDNQ-KI 103 (177)
T ss_dssp HHHHHHHTTCEEEEEESSSEEEEETTSCEEEECEEGGGCCGGGCSEEEECCSGG--GGGGTTCHHHHHHHHHHHHTT-CE
T ss_pred HHHHHHHCCCEEEEEECCCCeEeeCCCCEEecCccHHHCCHhHCCEEEECCCcc--HHHHhhCHHHHHHHHHHHHhC-CE
Confidence 34567889998877754310 0112221 45679999999953 333333344555555555443 49
Q ss_pred ceEeeCCc
Q 028817 180 VHGITGDV 187 (203)
Q Consensus 180 V~Gic~~~ 187 (203)
|.+||.|.
T Consensus 104 iaaIC~g~ 111 (177)
T 4hcj_A 104 VAGIGSGV 111 (177)
T ss_dssp EEEETTHH
T ss_pred EEEecccH
Confidence 99999885
No 43
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=90.06 E-value=0.34 Score=47.42 Aligned_cols=76 Identities=9% Similarity=-0.055 Sum_probs=44.9
Q ss_pred HHHHHHHHHCCCeEEEeecCCCH----HHHHHHHHhcCEEEeCCCCCCC------CcChHHHHHHHHHHHHHHhCCCCcc
Q 028817 111 ASYVKFVESAGARVIPLIYNEPE----EILFEKLKLVNGVLLTGGWAKK------GLYFQIVEKIFKHEAIYERKKQSLV 180 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~----e~l~~~Ld~VDGVLLTGG~DVd------P~yY~~~~~I~~~AL~~n~~g~~PV 180 (203)
..-+++++++|+.+.+|-..... ...+.--...|+|+++||..-. |..........+.+.+.++.+ -||
T Consensus 555 ~~p~~aL~~aGa~V~vVsp~~g~GvD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~~d~Lr~~~~a~~fV~e~~~hg-KpI 633 (688)
T 3ej6_A 555 KALKEQLEKDGLKVTVIAEYLASGVDQTYSAADATAFDAVVVAEGAERVFSGKGAMSPLFPAGRPSQILTDGYRWG-KPV 633 (688)
T ss_dssp HHHHHHHHHTTCEEEEEESSCCTTCCEETTTCCGGGCSEEEECTTCCTTTSTTTTCCTTSCTTHHHHHHHHHHHTT-CCE
T ss_pred HHHHHHHHHCCCEEEEEeCCCCCCcccCcccCChhcCcEEEECCCcccccccccchhhhccCHHHHHHHHHHHHcC-CEE
Confidence 44456899999999999763321 1011123568999999997421 333332233334444444322 599
Q ss_pred eEeeCCc
Q 028817 181 HGITGDV 187 (203)
Q Consensus 181 ~Gic~~~ 187 (203)
-+||.|.
T Consensus 634 AAIchgp 640 (688)
T 3ej6_A 634 AAVGSAK 640 (688)
T ss_dssp EEEGGGH
T ss_pred EEeCccH
Confidence 9999864
No 44
>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A
Probab=88.06 E-value=0.16 Score=40.93 Aligned_cols=51 Identities=10% Similarity=0.040 Sum_probs=32.7
Q ss_pred HHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCcc
Q 028817 137 FEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDVV 188 (203)
Q Consensus 137 ~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~~ 188 (203)
+...+..|.|++|||.. .+........+.+...+..+++..+|-.||+|.+
T Consensus 68 d~~~~~yD~lvvPGG~~-~~~~l~~~~~l~~~l~~~~~~~~k~iaaiC~g~~ 118 (194)
T 4gdh_A 68 DDFAKQYDIAIIPGGGL-GAKTLSTTPFVQQVVKEFYKKPNKWIGMICAGTL 118 (194)
T ss_dssp HHHHHHCSEEEECCCHH-HHHHHHTCHHHHHHHHHHTTCTTCEEEEEGGGGH
T ss_pred ccccccCCEEEECCCch-hHhHhhhCHHHHHHHHHhhhcCCceEEeeccccc
Confidence 34567889999999931 0111222345555555555566679999999863
No 45
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=86.42 E-value=0.65 Score=45.96 Aligned_cols=74 Identities=9% Similarity=-0.085 Sum_probs=46.6
Q ss_pred hHHHHHHHHHCCCeEEEeecCCCH------------HHHHH-HHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCC
Q 028817 110 AASYVKFVESAGARVIPLIYNEPE------------EILFE-KLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKK 176 (203)
Q Consensus 110 ~~sYVkaVe~AGA~PV~LP~~~~~------------e~l~~-~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g 176 (203)
...-++.++++|+.+.++-..... ..+++ -....|+|+++|| .+........+.+.+.+.+..+
T Consensus 616 l~~pvdaLr~AG~~V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s~~fDALVVPGG---g~~~Lr~d~~vl~~Vre~~~~g 692 (753)
T 3ttv_A 616 LLAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCG---NIADIADNGDANYYLMEAYKHL 692 (753)
T ss_dssp HHHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCS---CGGGTTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCEEEEEEcCCCeEEeCCCCEEecccchhhCCCcCCCEEEECCC---ChHHhhhCHHHHHHHHHHHhcC
Confidence 345567889999999888653210 01111 1235799999999 4444444445555555555433
Q ss_pred CCcceEeeCCc
Q 028817 177 QSLVHGITGDV 187 (203)
Q Consensus 177 ~~PV~Gic~~~ 187 (203)
-||-+||.|.
T Consensus 693 -KpIAAIC~Gp 702 (753)
T 3ttv_A 693 -KPIALAGDAR 702 (753)
T ss_dssp -CCEEEEGGGG
T ss_pred -CeEEEECchH
Confidence 5999999885
No 46
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=86.30 E-value=0.28 Score=37.75 Aligned_cols=73 Identities=15% Similarity=0.087 Sum_probs=41.5
Q ss_pred HHHHHHHHCCCeEEEeecCCCH------------HHHHHH-HHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCC
Q 028817 112 SYVKFVESAGARVIPLIYNEPE------------EILFEK-LKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQS 178 (203)
Q Consensus 112 sYVkaVe~AGA~PV~LP~~~~~------------e~l~~~-Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~ 178 (203)
.-++.++++|..+.++-..... ..+++. .+..|.|+++||.. +........+.+...+...+ .-
T Consensus 20 ~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~--~~~~~~~~~l~~~l~~~~~~-~k 96 (168)
T 3l18_A 20 YPLHRIKEEGHEVYVASFQRGKITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKA--PEIVRLNEKAVMITRRMFED-DK 96 (168)
T ss_dssp HHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSH--HHHHTTCHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHCCCEEEEEECCCCEEecCCCcEEeccCChhHCCHhhCCEEEECCCcC--HHHhccCHHHHHHHHHHHHC-CC
Confidence 3446677888887776543200 011121 24689999999963 22222233444444444432 35
Q ss_pred cceEeeCCc
Q 028817 179 LVHGITGDV 187 (203)
Q Consensus 179 PV~Gic~~~ 187 (203)
+|.+||.|.
T Consensus 97 ~i~aiC~G~ 105 (168)
T 3l18_A 97 PVASICHGP 105 (168)
T ss_dssp CEEEETTTH
T ss_pred EEEEECHhH
Confidence 999999986
No 47
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=86.08 E-value=0.17 Score=41.58 Aligned_cols=46 Identities=4% Similarity=0.036 Sum_probs=26.9
Q ss_pred HhcCEEEeCCCCCCCCcChH---------HHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 141 KLVNGVLLTGGWAKKGLYFQ---------IVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 141 d~VDGVLLTGG~DVdP~yY~---------~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
+..|+|+++||.......++ ....+.+...+...+| -+|.+||-|.
T Consensus 89 ~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g-k~vaaIC~G~ 143 (232)
T 1vhq_A 89 AELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAG-KPLGFMCIAP 143 (232)
T ss_dssp GGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTT-CCEEEETTGG
T ss_pred ccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcC-CEEEEECHHH
Confidence 46899999999632000111 1233444444444333 5999999997
No 48
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}
Probab=84.62 E-value=0.69 Score=37.51 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=26.3
Q ss_pred hcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 142 LVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 142 ~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
..|.|+++||...+- .....+.+...+...+ .-+|.+||.|.
T Consensus 74 ~~D~livpGG~~~~~---~~~~~l~~~l~~~~~~-gk~iaaiC~G~ 115 (212)
T 3efe_A 74 SKDLLILPGGTTWSE---EIHQPILERIGQALKI-GTIVAAICGAT 115 (212)
T ss_dssp TTCEEEECCCSCTTS---GGGHHHHHHHHHHHHH-TCEEEEETHHH
T ss_pred CCCEEEECCCCcccc---ccCHHHHHHHHHHHHC-CCEEEEEcHHH
Confidence 689999999975321 2223344444444332 25999999986
No 49
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}
Probab=84.57 E-value=0.76 Score=35.56 Aligned_cols=47 Identities=6% Similarity=0.062 Sum_probs=29.3
Q ss_pred HHhcCEEEeCCC--C-CCCCcC-hHHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 140 LKLVNGVLLTGG--W-AKKGLY-FQIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 140 Ld~VDGVLLTGG--~-DVdP~y-Y~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
.+..|.|+++|| . ...... +-....+.+...+...+| -+|.+||.|.
T Consensus 64 ~~~~D~livpGG~~~~~~~~l~~~~~~~~~~~~l~~~~~~g-k~i~aiC~G~ 114 (175)
T 3cne_A 64 EDEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFGEKG-KMMIGHCAGA 114 (175)
T ss_dssp GGGCSEEEEECCTTGGGGGGCTTCHHHHHHHHHHHHHHHTT-CEEEEETTHH
T ss_pred cccCCEEEECCCcCcccHHHHhhcccCHHHHHHHHHHHHCC-CEEEEECHHH
Confidence 367899999999 4 322111 113445555555555443 4999999986
No 50
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=84.41 E-value=0.74 Score=40.53 Aligned_cols=74 Identities=15% Similarity=0.218 Sum_probs=44.0
Q ss_pred HHHHHHHHHCCCeEEEeecCCC----------------------------HHHHHHH-HHhcCEEEeCCCCCCCCcChHH
Q 028817 111 ASYVKFVESAGARVIPLIYNEP----------------------------EEILFEK-LKLVNGVLLTGGWAKKGLYFQI 161 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~----------------------------~e~l~~~-Ld~VDGVLLTGG~DVdP~yY~~ 161 (203)
..-++.++++|..+.++-.... ...+++. .+..|.|+++||.. +.....
T Consensus 29 ~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~--~~~~~~ 106 (396)
T 3uk7_A 29 MVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVDLSKYDGLVIPGGRA--PEYLAL 106 (396)
T ss_dssp HHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGGCCGGGCSEEEECCBSH--HHHHTT
T ss_pred HHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhhcCcccCCEEEECCCcc--hhhccc
Confidence 4445678889998877755321 0112222 45689999999963 222222
Q ss_pred HHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 162 VEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 162 ~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
...+.+...+...+ .-+|.+||.|.
T Consensus 107 ~~~~~~~l~~~~~~-~~~i~aiC~G~ 131 (396)
T 3uk7_A 107 TASVVELVKEFSRS-GKPIASICHGQ 131 (396)
T ss_dssp CHHHHHHHHHHHHT-TCCEEEETTTH
T ss_pred CHHHHHHHHHHHHc-CCEEEEECchH
Confidence 33444544444433 35999999986
No 51
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=83.72 E-value=4.7 Score=34.91 Aligned_cols=78 Identities=8% Similarity=-0.013 Sum_probs=51.9
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCC-C------------HHHHHHHHHhcCEEEeC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNE-P------------EEILFEKLKLVNGVLLT 149 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~-~------------~e~l~~~Ld~VDGVLLT 149 (203)
+.|++|.++++.. .....+.+.+++.+++.|+.+-++-... + ...+.+.+...|||||
T Consensus 59 mKILiI~GS~R~~--------S~T~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~- 129 (279)
T 2fzv_A 59 VRILLLYGSLRAR--------SFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVW- 129 (279)
T ss_dssp CEEEEEESCCSSS--------CHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEE-
T ss_pred CEEEEEEeCCCCC--------CHHHHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEE-
Confidence 4577788887542 1233456667777888898776655422 1 3456778899999999
Q ss_pred CCCCCCCcChHHHHHHHHHHHHHH
Q 028817 150 GGWAKKGLYFQIVEKIFKHEAIYE 173 (203)
Q Consensus 150 GG~DVdP~yY~~~~~I~~~AL~~n 173 (203)
..|.|+....-.+|-++++-
T Consensus 130 ----aSP~Yn~sipg~LKn~IDrl 149 (279)
T 2fzv_A 130 ----CSPERHGQITSVMKAQIDHL 149 (279)
T ss_dssp ----EEEEETTEECHHHHHHHHHS
T ss_pred ----EcCccccCcCHHHHHHHHHH
Confidence 56888876655666666543
No 52
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=83.39 E-value=0.98 Score=38.06 Aligned_cols=46 Identities=7% Similarity=0.076 Sum_probs=26.2
Q ss_pred HhcCEEEeCCCCCCC---CcC-------hHHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 141 KLVNGVLLTGGWAKK---GLY-------FQIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 141 d~VDGVLLTGG~DVd---P~y-------Y~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
+..|+|+++||.... ..+ ......+.+...+...+ .-||.+||.|.
T Consensus 106 ~~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~-gk~IaaIC~G~ 161 (242)
T 3l3b_A 106 EEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNA-KKPIGAVCISP 161 (242)
T ss_dssp GGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHT-TCCEEEETTHH
T ss_pred ccCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHc-CCEEEEECHHH
Confidence 457999999995310 111 11123344444444433 35999999874
No 53
>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}
Probab=82.51 E-value=0.71 Score=37.23 Aligned_cols=43 Identities=14% Similarity=0.138 Sum_probs=27.0
Q ss_pred HHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 140 LKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 140 Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
.+..|.|+++||....... . .+.+...+...+| .+|.+||.|.
T Consensus 69 ~~~~D~livpGG~~~~~~~-~---~l~~~l~~~~~~g-~~iaaIC~G~ 111 (202)
T 3gra_A 69 LKELDLLVVCGGLRTPLKY-P---ELDRLLNDCAAHG-MALGGLWNGA 111 (202)
T ss_dssp GTTCSEEEEECCTTCCSCC-T---THHHHHHHHHHHT-CEEEEETTHH
T ss_pred CCCCCEEEEeCCCchhhcc-H---HHHHHHHHHHhhC-CEEEEECHHH
Confidence 4678999999997532222 3 3333333333322 5999999986
No 54
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=82.45 E-value=0.56 Score=37.69 Aligned_cols=73 Identities=15% Similarity=0.186 Sum_probs=42.9
Q ss_pred HHHHHHHCCCeEEEeecCCC---------------HHHHHHH-HHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCC
Q 028817 113 YVKFVESAGARVIPLIYNEP---------------EEILFEK-LKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKK 176 (203)
Q Consensus 113 YVkaVe~AGA~PV~LP~~~~---------------~e~l~~~-Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g 176 (203)
-++.++++|..+.++-.... ...+++. .+..|.|+++||..- +..+.....+.+...+...+|
T Consensus 21 ~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG~~~-~~~l~~~~~l~~~l~~~~~~g 99 (205)
T 2ab0_A 21 TIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKG-AECFRDSTLLVETVKQFHRSG 99 (205)
T ss_dssp HHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHH-HHHHHHCHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECCCccc-HHHhccCHHHHHHHHHHHHcC
Confidence 34667888988877654321 1123333 256899999999520 111222344444444444333
Q ss_pred CCcceEeeCCc
Q 028817 177 QSLVHGITGDV 187 (203)
Q Consensus 177 ~~PV~Gic~~~ 187 (203)
-+|.+||.|.
T Consensus 100 -k~i~aiC~G~ 109 (205)
T 2ab0_A 100 -RIVAAICAAP 109 (205)
T ss_dssp -CEEEEETHHH
T ss_pred -CEEEEECHhH
Confidence 4999999998
No 55
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=81.90 E-value=1.9 Score=35.03 Aligned_cols=71 Identities=17% Similarity=0.129 Sum_probs=37.7
Q ss_pred CCCCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHH-HHH---CCCeEEEeecC-CCHHHH----HHHHH--hcCEEEe
Q 028817 80 LNNRPVIGILSHPGDGASGRLNNSKNASYIAASYVKF-VES---AGARVIPLIYN-EPEEIL----FEKLK--LVNGVLL 148 (203)
Q Consensus 80 ~~~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVka-Ve~---AGA~PV~LP~~-~~~e~l----~~~Ld--~VDGVLL 148 (203)
..++|.|+|.+--.+- ..+ ...-....++.. +++ .|+.++..... ++.+.+ ++.++ .+|-||.
T Consensus 11 v~~~~rv~IistGdEl-----~~g-~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVIt 84 (189)
T 1jlj_A 11 HDHQIRVGVLTVSDSC-----FRN-LAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDEKELNLILT 84 (189)
T ss_dssp --CCCEEEEEEECHHH-----HTT-SSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred ccCCCEEEEEEECCcc-----CCC-cccchHHHHHHHHHhchhcCCcEEEEEEEeCCCHHHHHHHHHHHhhcCCCCEEEE
Confidence 3457888887553110 001 111123444554 455 68887654432 344444 44455 6899999
Q ss_pred CCCCCCCC
Q 028817 149 TGGWAKKG 156 (203)
Q Consensus 149 TGG~DVdP 156 (203)
|||.-+.+
T Consensus 85 tGGtg~g~ 92 (189)
T 1jlj_A 85 TGGTGFAP 92 (189)
T ss_dssp ESCCSSST
T ss_pred cCCCCCCC
Confidence 99975544
No 56
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=80.35 E-value=0.9 Score=39.07 Aligned_cols=46 Identities=7% Similarity=0.018 Sum_probs=27.3
Q ss_pred HhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCcc
Q 028817 141 KLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDVV 188 (203)
Q Consensus 141 d~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~~ 188 (203)
+..|+|+++||....- .......+.+...+...+| -+|.+||-|..
T Consensus 144 ~~yD~livPGG~g~~~-~l~~~~~l~~~l~~~~~~g-k~VaaIC~Gp~ 189 (291)
T 1n57_A 144 SEYAAIFVPGGHGALI-GLPESQDVAAALQWAIKND-RFVISLCHGPA 189 (291)
T ss_dssp CSEEEEEECCSGGGGS-SGGGCHHHHHHHHHHHHTT-CEEEEETTGGG
T ss_pred ccCCEEEecCCcchhh-hhhhCHHHHHHHHHHHHcC-CEEEEECccHH
Confidence 5679999999953110 1222233444444444333 49999999873
No 57
>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}
Probab=80.31 E-value=0.46 Score=38.55 Aligned_cols=46 Identities=13% Similarity=0.024 Sum_probs=27.6
Q ss_pred HhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 141 KLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 141 d~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
+..|.|+++||.............+.+...+...+ .-+|.+||.|.
T Consensus 73 ~~~D~livpGg~~~~~~~~~~~~~l~~~l~~~~~~-g~~iaaIC~G~ 118 (209)
T 3er6_A 73 DFTNILIIGSIGDPLESLDKIDPALFDWIRELHLK-GSKIVAIDTGI 118 (209)
T ss_dssp SCCSEEEECCCSCHHHHGGGSCHHHHHHHHHHHHT-TCEEEEETTHH
T ss_pred CCCCEEEECCCCCchhhhccCCHHHHHHHHHHHhc-CCEEEEEcHHH
Confidence 57899999999742111111223444444444433 35999999975
No 58
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=79.69 E-value=0.98 Score=36.33 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=26.4
Q ss_pred HhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 141 KLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 141 d~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
+..|+|+++||....-. ......+.+...+...+| -+|.+||.|.
T Consensus 88 ~~~D~livpGG~~~~~~-l~~~~~l~~~l~~~~~~~-k~iaaiC~G~ 132 (224)
T 1u9c_A 88 HGFDAIFLPGGHGTMFD-FPDNETLQYVLQQFAEDG-RIIAAVCHGP 132 (224)
T ss_dssp SSCSEEEECCCTTHHHH-STTCHHHHHHHHHHHHTT-CEEEEETTGG
T ss_pred hhCCEEEECCCcchHHH-hhcCHHHHHHHHHHHHCC-CEEEEEChHH
Confidence 36899999999642100 111233444444444332 4999999987
No 59
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=79.06 E-value=0.53 Score=41.46 Aligned_cols=74 Identities=12% Similarity=0.154 Sum_probs=43.4
Q ss_pred HHHHHHHHHCCCeEEEeecCCC----------------------------HHHHHHH-HHhcCEEEeCCCCCCCCcChHH
Q 028817 111 ASYVKFVESAGARVIPLIYNEP----------------------------EEILFEK-LKLVNGVLLTGGWAKKGLYFQI 161 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~----------------------------~e~l~~~-Ld~VDGVLLTGG~DVdP~yY~~ 161 (203)
..-++.++++|..+.++-.... ...+++. .+..|.|+++||.. +.....
T Consensus 222 ~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~livpGg~~--~~~~~~ 299 (396)
T 3uk7_A 222 KVPFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDDLVSSSYDALVIPGGRA--PEYLAL 299 (396)
T ss_dssp HHHHHHHHHHTCEEEEECTTCCTTCEECEEEEECCSSSSCEEEECCCEECCSCGGGCCGGGCSEEEECCBSH--HHHHTT
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCcccccccccccccchhhhcCCceeeccCCHHHCCcccCCEEEECCCcc--hhhhcc
Confidence 3445677889998887754321 1112222 45789999999963 222222
Q ss_pred HHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 162 VEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 162 ~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
...+.+...+...+ .-+|.+||.|.
T Consensus 300 ~~~~~~~l~~~~~~-~~~i~aiC~g~ 324 (396)
T 3uk7_A 300 NEHVLNIVKEFMNS-EKPVASICHGQ 324 (396)
T ss_dssp CHHHHHHHHHHHHT-TCCEEEEGGGH
T ss_pred CHHHHHHHHHHHHC-CCEEEEEchHH
Confidence 23444444444433 35999999986
No 60
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=78.63 E-value=1 Score=36.68 Aligned_cols=42 Identities=19% Similarity=0.147 Sum_probs=27.1
Q ss_pred HhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 141 KLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 141 d~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
+..|.|+++||...+ . ....+.+...+... ..-+|.+||.|.
T Consensus 62 ~~~D~livpGG~~~~--~--~~~~l~~~l~~~~~-~gk~iaaiC~G~ 103 (206)
T 3f5d_A 62 ANFNLLVMIGGDSWS--N--DNKKLLHFVKTAFQ-KNIPIAAICGAV 103 (206)
T ss_dssp SCCSEEEECCBSCCC--C--CCHHHHHHHHHHHH-TTCCEEEETHHH
T ss_pred cCCCEEEEcCCCChh--h--cCHHHHHHHHHHHH-cCCEEEEECHHH
Confidence 468999999997432 2 33344444444443 235999999875
No 61
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=78.48 E-value=1.1 Score=43.82 Aligned_cols=90 Identities=14% Similarity=0.141 Sum_probs=52.8
Q ss_pred CEEEEcCCCCCCCCCCCCCCCCchhh-hHHHHHHHHHCCCeEEEeecCCCH---HHHHH-HHHhcCEEEeCCCCCC--C-
Q 028817 84 PVIGILSHPGDGASGRLNNSKNASYI-AASYVKFVESAGARVIPLIYNEPE---EILFE-KLKLVNGVLLTGGWAK--K- 155 (203)
Q Consensus 84 PVIGIta~~~~~~~~~~~~~~~~syI-~~sYVkaVe~AGA~PV~LP~~~~~---e~l~~-~Ld~VDGVLLTGG~DV--d- 155 (203)
..|||+....++ ..-+ ...-+++++++|+.++++-..... ..+++ -....|+|+++||..- .
T Consensus 530 ~kVaIL~a~~dG----------fe~~E~~~~~~~L~~aG~~V~vVs~~~g~~vD~t~~~~~s~~fDAVvlPGG~~g~~~~ 599 (688)
T 2iuf_A 530 LKVGLLASVNKP----------ASIAQGAKLQVALSSVGVDVVVVAERXANNVDETYSASDAVQFDAVVVADGAEGLFGA 599 (688)
T ss_dssp CEEEEECCTTCH----------HHHHHHHHHHHHHGGGTCEEEEEESSCCTTCCEESTTCCGGGCSEEEECTTCGGGCCT
T ss_pred CEEEEEecCCCC----------CcHHHHHHHHHHHHHCCCEEEEEeccCCcccccchhcCCccccCeEEecCCCcccccc
Confidence 368888763221 2223 344455789999999998764311 01111 2457899999999531 1
Q ss_pred ------------Cc-Ch--HHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 156 ------------GL-YF--QIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 156 ------------P~-yY--~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
+. ++ +.+..|.+.+.+.. -||-+||.|.
T Consensus 600 ~~~~~~~~~~~~~~~L~~~~~~~~~v~~~~~~g----KpIaAIc~ap 642 (688)
T 2iuf_A 600 DSFTVEPSAGSGASTLYPAGRPLNILLDAFRFG----KTVGALGSGS 642 (688)
T ss_dssp TTTTCCCCTTSCCCSSSCTTHHHHHHHHHHHHT----CEEEEEGGGH
T ss_pred cccccccccccchhhcccChHHHHHHHHHHHcC----CEEEEECchH
Confidence 22 22 34455555444443 5999999874
No 62
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=77.85 E-value=0.89 Score=35.55 Aligned_cols=44 Identities=18% Similarity=0.166 Sum_probs=25.8
Q ss_pred HhcCEEEeCCCC-CCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 141 KLVNGVLLTGGW-AKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 141 d~VDGVLLTGG~-DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
+..|.|+++||. ... .+.....+.+...+...+| -+|.+||.|.
T Consensus 74 ~~~D~livpGG~~~~~--~~~~~~~l~~~l~~~~~~g-k~i~aiC~G~ 118 (190)
T 2vrn_A 74 SDYDGLLLPGGTVNPD--KLRLEEGAMKFVRDMYDAG-KPIAAICHGP 118 (190)
T ss_dssp GGCSEEEECCCTHHHH--HHTTCHHHHHHHHHHHHTT-CCEEEC-CTT
T ss_pred hhCCEEEECCCchhHH--HHhhCHHHHHHHHHHHHcC-CEEEEECHhH
Confidence 568999999995 321 1111233444444444333 5999999996
No 63
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=75.43 E-value=2 Score=34.12 Aligned_cols=70 Identities=10% Similarity=0.075 Sum_probs=37.1
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHH-HHHHCCCeEEEeecC-CCHHHH----HHHHH-hcCEEEeCCCCC
Q 028817 81 NNRPVIGILSHPGDGASGRLNNSKNASYIAASYVK-FVESAGARVIPLIYN-EPEEIL----FEKLK-LVNGVLLTGGWA 153 (203)
Q Consensus 81 ~~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVk-aVe~AGA~PV~LP~~-~~~e~l----~~~Ld-~VDGVLLTGG~D 153 (203)
++||.++|.+--.+-..+. ..-.+..++. .++++|+.++-.... ++ +.+ ++.++ .+|-||.|||..
T Consensus 5 ~~~~rv~ii~tGdEl~~G~------i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVittGG~s 77 (164)
T 3pzy_A 5 MTTRSARVIIASTRASSGE------YEDRCGPIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTSGGTG 77 (164)
T ss_dssp --CCEEEEEEECHHHHC----------CCHHHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEESCCS
T ss_pred CCCCEEEEEEECCCCCCCc------eeeHHHHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEECCCCC
Confidence 6688999875532110011 1112233334 478899987643322 23 444 34454 789999999976
Q ss_pred CCCc
Q 028817 154 KKGL 157 (203)
Q Consensus 154 VdP~ 157 (203)
+.+.
T Consensus 78 ~g~~ 81 (164)
T 3pzy_A 78 IAPT 81 (164)
T ss_dssp SSTT
T ss_pred CCCC
Confidence 6553
No 64
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=75.25 E-value=3.8 Score=32.17 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=22.1
Q ss_pred CCeEEEeecC-CCHHHHHH----HHH--hcCEEEeCCCCCCCC
Q 028817 121 GARVIPLIYN-EPEEILFE----KLK--LVNGVLLTGGWAKKG 156 (203)
Q Consensus 121 GA~PV~LP~~-~~~e~l~~----~Ld--~VDGVLLTGG~DVdP 156 (203)
|+.++-.... ++.+.+.+ .++ .+|-|+.|||.-+.+
T Consensus 43 G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g~ 85 (167)
T 1uuy_A 43 GAKVVATAVVPDEVERIKDILQKWSDVDEMDLILTLGGTGFTP 85 (167)
T ss_dssp SEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSST
T ss_pred CcEEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCC
Confidence 8877654332 34444443 343 589999999975443
No 65
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=73.82 E-value=8.7 Score=31.17 Aligned_cols=75 Identities=8% Similarity=0.002 Sum_probs=44.6
Q ss_pred CEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHC-CCeEEEeecC-------------------------CCHHHHH
Q 028817 84 PVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESA-GARVIPLIYN-------------------------EPEEILF 137 (203)
Q Consensus 84 PVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~A-GA~PV~LP~~-------------------------~~~e~l~ 137 (203)
.|+.|.++++.. .....+.+..++.++++ |+.+-++-.. .+.+.+.
T Consensus 3 kIliI~gS~r~~--------s~T~~la~~i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~ 74 (242)
T 1sqs_A 3 KIFIYAGVRNHN--------SKTLEYTKRLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIK 74 (242)
T ss_dssp EEEEEECCCCTT--------CHHHHHHHHHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHH
T ss_pred eEEEEECCCCCC--------ChHHHHHHHHHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHH
Confidence 467777776531 13345667777888777 8877555322 2334555
Q ss_pred HHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHH
Q 028817 138 EKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAI 171 (203)
Q Consensus 138 ~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~ 171 (203)
+.+...|+|+|. .|.|+...--.++..++
T Consensus 75 ~~l~~AD~iI~~-----sP~y~~~~p~~lK~~iD 103 (242)
T 1sqs_A 75 KELLESDIIIIS-----SPVYLQNVSVDTKNFIE 103 (242)
T ss_dssp HHHHHCSEEEEE-----EEECSSSCCHHHHHHHH
T ss_pred HHHHHCCEEEEE-----ccccccCCCHHHHHHHH
Confidence 678889999993 46666443333333333
No 66
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=73.31 E-value=1.5 Score=36.13 Aligned_cols=44 Identities=7% Similarity=0.094 Sum_probs=26.4
Q ss_pred HhcCEEEeCCCCCCCCcC-hHHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 141 KLVNGVLLTGGWAKKGLY-FQIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 141 d~VDGVLLTGG~DVdP~y-Y~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
+..|+|+++||... .+ ......+.+...+...+ .-+|.+||-|.
T Consensus 97 ~~~D~livpGG~~~--~~~l~~~~~l~~~l~~~~~~-gk~vaaIC~G~ 141 (243)
T 1rw7_A 97 DDYQIFFASAGHGT--LFDYPKAKDLQDIASEIYAN-GGVVAAVCHGP 141 (243)
T ss_dssp GGEEEEEECCSTTH--HHHGGGCHHHHHHHHHHHHT-TCEEEEETTGG
T ss_pred hhCcEEEECCCCCc--hhhcccCHHHHHHHHHHHHc-CCEEEEECCCH
Confidence 45799999999641 11 11223344444444433 35999999987
No 67
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=72.49 E-value=11 Score=34.10 Aligned_cols=77 Identities=16% Similarity=0.113 Sum_probs=41.7
Q ss_pred CCCCEEEEcCCCCCC-CCCCCCCCCCchhhhHHHHH-HHHHCCCeEEEeecCC-CHHH----HHHHHHhcCEEEeCCCCC
Q 028817 81 NNRPVIGILSHPGDG-ASGRLNNSKNASYIAASYVK-FVESAGARVIPLIYNE-PEEI----LFEKLKLVNGVLLTGGWA 153 (203)
Q Consensus 81 ~~rPVIGIta~~~~~-~~~~~~~~~~~syI~~sYVk-aVe~AGA~PV~LP~~~-~~e~----l~~~Ld~VDGVLLTGG~D 153 (203)
.+||.|||.+.-.+- ..+.........-.+..++. .+++.|+.++-+.... +.+. +++.++.+|-||.|||..
T Consensus 175 ~~~~rv~iistGdEl~~~g~~~~~G~i~dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~al~~a~~~~DlvittGG~s 254 (411)
T 1g8l_A 175 IRKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVS 254 (411)
T ss_dssp ECCCEEEEEEECTTEECTTSCCCSSCEECCHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEECSSSC
T ss_pred cCCCEEEEEEcCccccCCCCCCCCCcEEcCchHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHhhcCCEEEECCCCC
Confidence 357899986532110 00110101111122334444 3678999887654433 4343 444556789999999987
Q ss_pred CCCc
Q 028817 154 KKGL 157 (203)
Q Consensus 154 VdP~ 157 (203)
+.+.
T Consensus 255 ~g~~ 258 (411)
T 1g8l_A 255 VGEA 258 (411)
T ss_dssp SSSC
T ss_pred CCCc
Confidence 6553
No 68
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=72.37 E-value=7.9 Score=32.88 Aligned_cols=76 Identities=17% Similarity=0.174 Sum_probs=46.9
Q ss_pred HHHHHHHHHCCCeE-EEeecCCCHHHHHHHHHhcCEEEe----CC--CCCCCCcChHHHHHHHHHHHHHHhCCCCcceEe
Q 028817 111 ASYVKFVESAGARV-IPLIYNEPEEILFEKLKLVNGVLL----TG--GWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGI 183 (203)
Q Consensus 111 ~sYVkaVe~AGA~P-V~LP~~~~~e~l~~~Ld~VDGVLL----TG--G~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gi 183 (203)
...++.++++|.++ |.|.+..+.+.++++++.+|-|++ +| |+..-|.-.+..+.+-++.-+ +|-.--..+
T Consensus 124 ~~~i~~ir~~G~k~Gvalnp~Tp~e~l~~~l~~vD~VlvMsV~PGfgGQ~fi~~~l~KI~~lr~~~~~---~~~~~~I~V 200 (246)
T 3inp_A 124 DRSLQLIKSFGIQAGLALNPATGIDCLKYVESNIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISS---TDRDILLEI 200 (246)
T ss_dssp HHHHHHHHTTTSEEEEEECTTCCSGGGTTTGGGCSEEEEECSCTTC--CCCCTTHHHHHHHHHHHHHH---HTSCCEEEE
T ss_pred HHHHHHHHHcCCeEEEEecCCCCHHHHHHHHhcCCEEEEeeecCCCCCcccchHHHHHHHHHHHHHHh---cCCCeeEEE
Confidence 56788888888877 444444566788899999998876 44 555566666666655444333 232222345
Q ss_pred eCCccc
Q 028817 184 TGDVVQ 189 (203)
Q Consensus 184 c~~~~~ 189 (203)
-||+=.
T Consensus 201 DGGI~~ 206 (246)
T 3inp_A 201 DGGVNP 206 (246)
T ss_dssp ESSCCT
T ss_pred ECCcCH
Confidence 566543
No 69
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=72.11 E-value=16 Score=27.95 Aligned_cols=77 Identities=10% Similarity=0.070 Sum_probs=45.7
Q ss_pred CEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCC--CeEEEeecCCC-----------------------------
Q 028817 84 PVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAG--ARVIPLIYNEP----------------------------- 132 (203)
Q Consensus 84 PVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AG--A~PV~LP~~~~----------------------------- 132 (203)
.|+.|.++++... .....+.+.+++.++++| ..+-.+-....
T Consensus 3 kilii~~S~~~~~-------s~t~~la~~~~~~l~~~g~~~~v~~~dl~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~~ 75 (201)
T 1t5b_A 3 KVLVLKSSILAGY-------SQSGQLTDYFIEQWREKHVADEITVRDLAANPVPVLDGELVGAMRPGDAPLTPRQQDALA 75 (201)
T ss_dssp EEEEEECCSSGGG-------CHHHHHHHHHHHHHHHHCTTCEEEEEETTTSCCCCCCHHHHHHTC--CCCCCHHHHHHHH
T ss_pred eEEEEEeCCCCCC-------ChHHHHHHHHHHHHHHhCCCCeEEEEeccCCCCCCCCHHHHHhhcCCcccCCHHHHHHHH
Confidence 3667777765210 134456777788888766 66655543211
Q ss_pred -HHHHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHH
Q 028817 133 -EEILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIY 172 (203)
Q Consensus 133 -~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~ 172 (203)
.+.+.+.+...|+|+| ..|.|+...--.+|..+++
T Consensus 76 ~~~~~~~~l~~aD~iv~-----~~P~y~~~~p~~lK~~iD~ 111 (201)
T 1t5b_A 76 LSDELIAELKAHDVIVI-----AAPMYNFNIPTQLKNYFDL 111 (201)
T ss_dssp HHHHHHHHHHHCSEEEE-----ECCCBTTBCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCEEEE-----EeCcccCcCCHHHHHHHHH
Confidence 1234567888999999 4677776544444444443
No 70
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=71.91 E-value=18 Score=28.70 Aligned_cols=64 Identities=16% Similarity=0.063 Sum_probs=39.1
Q ss_pred CCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHH-----HhcCEEEeCCCCC
Q 028817 82 NRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKL-----KLVNGVLLTGGWA 153 (203)
Q Consensus 82 ~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~L-----d~VDGVLLTGG~D 153 (203)
+..+||+....... ..+..+.+..-+++++.|...++.....+.+.-.+++ ..+|||++.+...
T Consensus 6 ~s~~Igvi~~~~~~--------~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 74 (276)
T 3jy6_A 6 SSKLIAVIVANIDD--------YFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN 74 (276)
T ss_dssp CCCEEEEEESCTTS--------HHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC
T ss_pred CCcEEEEEeCCCCc--------hHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc
Confidence 34689987654221 1223344444556777899888888765554333333 4799999988654
No 71
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=71.82 E-value=12 Score=29.53 Aligned_cols=77 Identities=13% Similarity=0.141 Sum_probs=46.0
Q ss_pred CCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCC--------------CHHHHHHHHHhcCEEE
Q 028817 82 NRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNE--------------PEEILFEKLKLVNGVL 147 (203)
Q Consensus 82 ~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~--------------~~e~l~~~Ld~VDGVL 147 (203)
++.|+.|.++++... ....+.+.+++.++ .|+.+-.+-... +...+.+.+...|+|+
T Consensus 2 M~kilii~gS~r~~s--------~t~~la~~~~~~~~-~~~~v~~~dl~~lp~~~~~~~~~~~~~~~~~~~~i~~AD~iV 72 (192)
T 3fvw_A 2 SKRILFIVGSFSEGS--------FNRQLAKKAETIIG-DRAQVSYLSYDRVPFFNQDLETSVHPEVAHAREEVQEADAIW 72 (192)
T ss_dssp -CEEEEEESCCSTTC--------HHHHHHHHHHHHHT-TSSEEEECCCSSCCCCCGGGTTSCCHHHHHHHHHHHHCSEEE
T ss_pred CCEEEEEEcCCCCCC--------HHHHHHHHHHHhcC-CCCEEEEEeCccCCCCCcccccCCcHHHHHHHHHHHhCCEEE
Confidence 345778888876321 22345555566565 566665554321 1245778899999999
Q ss_pred eCCCCCCCCcChHHHHHHHHHHHHH
Q 028817 148 LTGGWAKKGLYFQIVEKIFKHEAIY 172 (203)
Q Consensus 148 LTGG~DVdP~yY~~~~~I~~~AL~~ 172 (203)
| ..|.|+...--.+|-.+++
T Consensus 73 ~-----~sP~y~~~~p~~lK~~iD~ 92 (192)
T 3fvw_A 73 I-----FSPVYNYAIPGPVKNLLDW 92 (192)
T ss_dssp E-----ECCCBTTBCCHHHHHHHHH
T ss_pred E-----ECcccccCCCHHHHHHHHH
Confidence 9 5688886554444444444
No 72
>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2
Probab=71.72 E-value=0.4 Score=37.82 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=23.7
Q ss_pred hcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 142 LVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 142 ~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
..|.|+++||...... ....+.+...+...+ .-+|.+||.|.
T Consensus 63 ~~D~livpGG~~~~~~---~~~~l~~~l~~~~~~-~k~i~aiC~G~ 104 (188)
T 2fex_A 63 DIDALVIPGGLSWEKG---TAADLGGLVKRFRDR-DRLVAGICAAA 104 (188)
T ss_dssp TCSEEEECCBSHHHHT---CCCCCHHHHHHHHHT-TCEEEEETHHH
T ss_pred cCCEEEECCCCccccc---ccHHHHHHHHHHHHC-CCEEEEECHHH
Confidence 6899999999631100 111222233333322 24999999876
No 73
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=71.43 E-value=24 Score=27.55 Aligned_cols=61 Identities=7% Similarity=0.044 Sum_probs=37.5
Q ss_pred CEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHH----HHHH-HhcCEEEeCCCC
Q 028817 84 PVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEIL----FEKL-KLVNGVLLTGGW 152 (203)
Q Consensus 84 PVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l----~~~L-d~VDGVLLTGG~ 152 (203)
-+||+....... ..+..+.+..-++.++.|...++.....+.+.- +.++ ..+|||++.+..
T Consensus 3 ~~Igvi~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 68 (272)
T 3o74_A 3 RTLGFILPDLEN--------PSYARIAKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRARRCDALFVASCL 68 (272)
T ss_dssp CEEEEEESCTTC--------HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCC
T ss_pred eEEEEEeCCCcC--------hhHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 478887654321 122334455555677889999888876554432 2332 369999998865
No 74
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=70.97 E-value=12 Score=31.01 Aligned_cols=71 Identities=15% Similarity=0.126 Sum_probs=46.2
Q ss_pred hHHHHHHHHHCCCeE-EEeecCCCHHHHHHHHHhcCEEEe----CC--CCCCCCcChHHHHHHHHHHHHHHhCCCCcceE
Q 028817 110 AASYVKFVESAGARV-IPLIYNEPEEILFEKLKLVNGVLL----TG--GWAKKGLYFQIVEKIFKHEAIYERKKQSLVHG 182 (203)
Q Consensus 110 ~~sYVkaVe~AGA~P-V~LP~~~~~e~l~~~Ld~VDGVLL----TG--G~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~G 182 (203)
...+++.+++.|.++ |.|....+.+.++++++.+|-|++ +| |+...|.-.+..+.+-++ .++.+ ..
T Consensus 101 ~~~~i~~i~~~G~k~gval~p~t~~e~l~~~l~~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~------~~~~~-I~ 173 (228)
T 3ovp_A 101 PGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQ------FPSLD-IE 173 (228)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTSCGGGTGGGGGGCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHH------CTTCE-EE
T ss_pred HHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHhccCCeEEEeeecCCCCCcccCHHHHHHHHHHHHh------cCCCC-EE
Confidence 356888899999876 444444567888899999999876 54 445556665555544332 22334 46
Q ss_pred eeCCc
Q 028817 183 ITGDV 187 (203)
Q Consensus 183 ic~~~ 187 (203)
+.||.
T Consensus 174 VdGGI 178 (228)
T 3ovp_A 174 VDGGV 178 (228)
T ss_dssp EESSC
T ss_pred EeCCc
Confidence 77776
No 75
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=70.87 E-value=11 Score=29.50 Aligned_cols=68 Identities=15% Similarity=0.171 Sum_probs=38.2
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHH-HHHHCCCeEEEeecC-CCHH----HHHHHHH--hcCEEEeCCCC
Q 028817 81 NNRPVIGILSHPGDGASGRLNNSKNASYIAASYVK-FVESAGARVIPLIYN-EPEE----ILFEKLK--LVNGVLLTGGW 152 (203)
Q Consensus 81 ~~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVk-aVe~AGA~PV~LP~~-~~~e----~l~~~Ld--~VDGVLLTGG~ 152 (203)
.++|.++|.+--.+- + ...-....++. .+++.|+.++-.... ++.+ .+++.++ .+|-|+.|||.
T Consensus 11 ~~~~rv~Ii~tGdEl--g------~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~ 82 (169)
T 1y5e_A 11 PKEVRCKIVTISDTR--T------EETDKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGT 82 (169)
T ss_dssp -CCCEEEEEEECSSC--C------TTTCHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCC
T ss_pred ccCCEEEEEEEcCcc--C------eeccChHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 457888887542211 1 11113334444 367789987654433 2334 3445555 78999999997
Q ss_pred CCCC
Q 028817 153 AKKG 156 (203)
Q Consensus 153 DVdP 156 (203)
-+.+
T Consensus 83 g~g~ 86 (169)
T 1y5e_A 83 GITK 86 (169)
T ss_dssp SSST
T ss_pred CCCC
Confidence 5433
No 76
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=70.60 E-value=19 Score=28.37 Aligned_cols=68 Identities=22% Similarity=0.231 Sum_probs=38.2
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHH-HHHHCCCeEEEeecC-CCHHHH----HHHHHh--cCEEEeCCCC
Q 028817 81 NNRPVIGILSHPGDGASGRLNNSKNASYIAASYVK-FVESAGARVIPLIYN-EPEEIL----FEKLKL--VNGVLLTGGW 152 (203)
Q Consensus 81 ~~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVk-aVe~AGA~PV~LP~~-~~~e~l----~~~Ld~--VDGVLLTGG~ 152 (203)
.+++.++|.+--.+ . + ...-....++. .+++.|+.++-.... ++.+.+ ++.+++ +|-||.|||.
T Consensus 8 ~~~~~v~Ii~tGdE-~-g------~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG~ 79 (172)
T 1mkz_A 8 FIPTRIAILTVSNR-R-G------EEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGT 79 (172)
T ss_dssp CCCCEEEEEEECSS-C-C------GGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCC
T ss_pred CCCCEEEEEEEeCC-C-C------cccCccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCCC
Confidence 45688887654221 1 1 11123334444 467889987654332 344444 444553 8999999997
Q ss_pred CCCC
Q 028817 153 AKKG 156 (203)
Q Consensus 153 DVdP 156 (203)
-+.+
T Consensus 80 g~~~ 83 (172)
T 1mkz_A 80 GLTE 83 (172)
T ss_dssp SSST
T ss_pred CCCC
Confidence 5433
No 77
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=69.74 E-value=11 Score=28.65 Aligned_cols=80 Identities=13% Similarity=0.090 Sum_probs=52.1
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHH-HHHCCCeEEE-------eecCCCHHHHHHHHHhcCEEEeCCCC
Q 028817 81 NNRPVIGILSHPGDGASGRLNNSKNASYIAASYVKF-VESAGARVIP-------LIYNEPEEILFEKLKLVNGVLLTGGW 152 (203)
Q Consensus 81 ~~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVka-Ve~AGA~PV~-------LP~~~~~e~l~~~Ld~VDGVLLTGG~ 152 (203)
+++.+++|++|+.. -..+|+.+.-++. -++.|-..-+ +-...+.+ -++..|+|||.+..
T Consensus 4 m~mkIvaVTaCptG---------iAHTyMAAeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~----~I~~Ad~VIiA~d~ 70 (111)
T 2kyr_A 4 MSKKLIALCACPMG---------LAHTFMAAQALEEAAVEAGYEVKIETQGADGIQNRLTAQ----DIAEATIIIHSVAV 70 (111)
T ss_dssp CCCEEEEEEEESSC---------HHHHHHHHHHHHHHHHHTSSEEEEEEEETTEEESCCCHH----HHHHCSEEEEEESS
T ss_pred ccccEEEEEcCCCc---------HHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcCCCCCHH----HHHhCCEEEEEeCC
Confidence 34569999999842 2456666666664 4557766544 11112333 47889999999998
Q ss_pred CC-CCcChH--------------HHHHHHHHHHHHH
Q 028817 153 AK-KGLYFQ--------------IVEKIFKHEAIYE 173 (203)
Q Consensus 153 DV-dP~yY~--------------~~~~I~~~AL~~n 173 (203)
.| +..+|. ..+.++++++..-
T Consensus 71 ~v~~~~RF~GK~v~~~~v~~ai~~p~~~l~~a~~~~ 106 (111)
T 2kyr_A 71 TPEDNERFESRDVYEITLQDAIKNAAGIIKEIEEMI 106 (111)
T ss_dssp CCTTGGGGTTSCEEEEETTHHHHSHHHHHHHHHHHH
T ss_pred CcCchhhcCCCeEEEeCHHHHHHCHHHHHHHHHHHH
Confidence 88 577872 2567777777643
No 78
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=68.50 E-value=10 Score=31.58 Aligned_cols=62 Identities=8% Similarity=-0.047 Sum_probs=39.8
Q ss_pred CCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHH----HHHHHHH---hcCEEEeCC
Q 028817 82 NRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEE----ILFEKLK---LVNGVLLTG 150 (203)
Q Consensus 82 ~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e----~l~~~Ld---~VDGVLLTG 150 (203)
.++.||++....... ..+..+.+..-++.++.|...++.....+.+ .++++++ .+|||++.+
T Consensus 2 ~~~~Ig~i~p~~~~~-------~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~ 70 (350)
T 3h75_A 2 SLTSVVFLNPGNSTE-------TFWVSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVN 70 (350)
T ss_dssp -CCEEEEEECSCTTC-------HHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEEC
T ss_pred CCCEEEEECCCCCCC-------hHHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 357889876643210 1233344555556777899988887655543 4666776 899999986
No 79
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=68.25 E-value=31 Score=28.75 Aligned_cols=77 Identities=14% Similarity=0.063 Sum_probs=50.5
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCC-C-----------HHHHHHHHHhcCEEEeCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNE-P-----------EEILFEKLKLVNGVLLTG 150 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~-~-----------~e~l~~~Ld~VDGVLLTG 150 (203)
+.|++|.++++.. .....+.+.+++.+++.|+.+-++-... + ...+.+.+...|||||
T Consensus 35 mkIliI~GS~r~~--------s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~-- 104 (247)
T 2q62_A 35 PRILILYGSLRTV--------SYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVW-- 104 (247)
T ss_dssp CEEEEEECCCCSS--------CHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEE--
T ss_pred CeEEEEEccCCCC--------CHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEE--
Confidence 3578888887642 1233456666777888888776665432 1 3566778889999999
Q ss_pred CCCCCCcChHHHHHHHHHHHHH
Q 028817 151 GWAKKGLYFQIVEKIFKHEAIY 172 (203)
Q Consensus 151 G~DVdP~yY~~~~~I~~~AL~~ 172 (203)
..|.|+....-.+|-++++
T Consensus 105 ---~sP~Yn~sipa~LKn~iD~ 123 (247)
T 2q62_A 105 ---VSPERHGAMTGIMKAQIDW 123 (247)
T ss_dssp ---EEECSSSSCCHHHHHHHHT
T ss_pred ---EeCCCCCCccHHHHHHHHH
Confidence 4577776655555555554
No 80
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=68.19 E-value=2.4 Score=35.56 Aligned_cols=45 Identities=4% Similarity=0.017 Sum_probs=26.5
Q ss_pred HhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 141 KLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 141 d~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
+..|+|+++||.... ......+.+.+...+...+ .-+|-+||-|.
T Consensus 97 ~~yD~l~vpGG~~~~-~~l~~~~~l~~~l~~~~~~-gk~iaaIC~G~ 141 (244)
T 3kkl_A 97 SDYKVFFASAGHGAL-FDYPKAKNLQDIASKIYAN-GGVIAAICHGP 141 (244)
T ss_dssp GGCSEEEECCSTTHH-HHGGGCHHHHHHHHHHHHT-TCEEEEETTGG
T ss_pred hhCCEEEEcCCCchh-hhcccCHHHHHHHHHHHHc-CCEEEEECHHH
Confidence 457999999996310 1112223444444444432 35999999986
No 81
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=67.64 E-value=21 Score=28.87 Aligned_cols=62 Identities=21% Similarity=0.106 Sum_probs=37.7
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHH-----HhcCEEEeCCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKL-----KLVNGVLLTGGW 152 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~L-----d~VDGVLLTGG~ 152 (203)
+.+||+....... ..+..+.+..-++.++.|...++.....+.+.-.+.+ ..+|||++.+..
T Consensus 2 ~~~Igvi~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~ 68 (313)
T 3m9w_A 2 EVKIGMAIDDLRL--------ERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYN 68 (313)
T ss_dssp -CEEEEEESCCSS--------STTHHHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred CcEEEEEeCCCCC--------hHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 4688987654321 1233344555566788899888887655544322222 469999998753
No 82
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=67.52 E-value=1.8 Score=34.07 Aligned_cols=75 Identities=16% Similarity=0.064 Sum_probs=42.1
Q ss_pred HHHHHHHHCCCeEEEeecCC-CH------------HHHHHH-HHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCC
Q 028817 112 SYVKFVESAGARVIPLIYNE-PE------------EILFEK-LKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQ 177 (203)
Q Consensus 112 sYVkaVe~AGA~PV~LP~~~-~~------------e~l~~~-Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~ 177 (203)
.-++.++++|..+.++-... .. ..+++. .+..|.|+++||..- .........+.+...+...+ .
T Consensus 23 ~~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG~~~-~~~~~~~~~~~~~l~~~~~~-~ 100 (190)
T 4e08_A 23 IAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLGG-SNAMGESSLVGDLLRSQESG-G 100 (190)
T ss_dssp HHHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEEECCCHHH-HHHHHHCHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEEECCCChH-HHHhhhCHHHHHHHHHHHHC-C
Confidence 34467788898887776543 10 012222 235799999999420 11122223444444444433 3
Q ss_pred CcceEeeCCcc
Q 028817 178 SLVHGITGDVV 188 (203)
Q Consensus 178 ~PV~Gic~~~~ 188 (203)
-+|.+||.|..
T Consensus 101 k~i~aiC~G~~ 111 (190)
T 4e08_A 101 GLIAAICAAPT 111 (190)
T ss_dssp CEEEEETTTHH
T ss_pred CEEEEECHHHH
Confidence 59999999863
No 83
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=67.23 E-value=20 Score=28.86 Aligned_cols=61 Identities=18% Similarity=0.173 Sum_probs=38.4
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCch-hhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHH-----hcCEEEeCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNAS-YIAASYVKFVESAGARVIPLIYNEPEEILFEKLK-----LVNGVLLTGG 151 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~s-yI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld-----~VDGVLLTGG 151 (203)
..+||+........ .+. .+.+..-+.+++.|-..++.....+.+.-.++++ .+|||++.+.
T Consensus 13 s~~Igvi~~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 79 (301)
T 3miz_A 13 SNTFGIITDYVSTT--------PYSVDIVRGIQDWANANGKTILIANTGGSSEREVEIWKMFQSHRIDGVLYVTM 79 (301)
T ss_dssp CCEEEEEESSTTTC--------CSCHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred CCEEEEEeCCCcCc--------ccHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEecC
Confidence 46899876543211 122 3445555677888999888876655543333333 7999999874
No 84
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=66.64 E-value=19 Score=28.63 Aligned_cols=46 Identities=17% Similarity=0.318 Sum_probs=29.1
Q ss_pred HHHHH-HHHHCCCeEEEeecC-CCHHHHHH----HHHh--cCEEEeCCCCCCCC
Q 028817 111 ASYVK-FVESAGARVIPLIYN-EPEEILFE----KLKL--VNGVLLTGGWAKKG 156 (203)
Q Consensus 111 ~sYVk-aVe~AGA~PV~LP~~-~~~e~l~~----~Ld~--VDGVLLTGG~DVdP 156 (203)
..++. .+++.|+.++-.... ++.+.+.+ .++. +|-||.|||..+.+
T Consensus 42 ~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVittGG~s~g~ 95 (178)
T 2pjk_A 42 GDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTGYSP 95 (178)
T ss_dssp HHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCSSST
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCC
Confidence 33444 478899988755432 34454444 4444 89999999976544
No 85
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=66.26 E-value=12 Score=33.83 Aligned_cols=47 Identities=17% Similarity=0.155 Sum_probs=31.3
Q ss_pred hHHHHHH-HHHCCCeEEEeecCC-CHH----HHHHHHHhcCEEEeCCCCCCCC
Q 028817 110 AASYVKF-VESAGARVIPLIYNE-PEE----ILFEKLKLVNGVLLTGGWAKKG 156 (203)
Q Consensus 110 ~~sYVka-Ve~AGA~PV~LP~~~-~~e----~l~~~Ld~VDGVLLTGG~DVdP 156 (203)
+..++.+ +++.|+.++.+.... +.+ .+++.++.+|-||.|||..+.+
T Consensus 209 N~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlVittGG~s~g~ 261 (419)
T 2fts_A 209 NRSTLLATIQEHGYPTINLGIVGDNPDDLLNALNEGISRADVIITSGGVSMGE 261 (419)
T ss_dssp HHHHHHHHHHTTTCCEEEEEEECSSHHHHHHHHHHHHHHCSEEEEESCCSSSC
T ss_pred chHHHHHHHHHCCCEEEEEeecCCCHHHHHHHHHHHHhcCCEEEEcCCCcCCC
Confidence 3344453 677899887655433 333 3445566789999999987665
No 86
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=66.22 E-value=29 Score=27.45 Aligned_cols=62 Identities=13% Similarity=0.131 Sum_probs=39.3
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHH-----HhcCEEEeCCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKL-----KLVNGVLLTGGW 152 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~L-----d~VDGVLLTGG~ 152 (203)
+..||+....... ..+..+.+..-+++++.|...++.....+.+.-.+.+ ..+|||++.+..
T Consensus 15 ~~~Igvi~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 81 (298)
T 3tb6_A 15 NKTIGVLTTYISD--------YIFPSIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTK 81 (298)
T ss_dssp CCEEEEEESCSSS--------TTHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSS
T ss_pred CceEEEEeCCCCc--------hHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeccc
Confidence 4689987654321 1233445555567788899998887665554333333 469999998754
No 87
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=65.57 E-value=13 Score=33.67 Aligned_cols=46 Identities=13% Similarity=0.169 Sum_probs=28.0
Q ss_pred HHHHH-HHHHCCCeEEEeecCC-CHH----HHHHHHHhcCEEEeCCCCCCCC
Q 028817 111 ASYVK-FVESAGARVIPLIYNE-PEE----ILFEKLKLVNGVLLTGGWAKKG 156 (203)
Q Consensus 111 ~sYVk-aVe~AGA~PV~LP~~~-~~e----~l~~~Ld~VDGVLLTGG~DVdP 156 (203)
..++. .+++.|+.++.+.... +.+ .+++.++.+|=||.|||..+.+
T Consensus 209 ~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlVittGG~s~g~ 260 (402)
T 1uz5_A 209 GRALCDAINELGGEGIFMGVARDDKESLKALIEKAVNVGDVVVISGGASGGT 260 (402)
T ss_dssp HHHHHHHHHHHTSEEEEEEEECSSHHHHHHHHHHHHHHCSEEEEECCC----
T ss_pred HHHHHHHHHhCCCeEEEEEEeCCCHHHHHHHHHHHhhCCCEEEEcCCCCCCC
Confidence 33444 3677899887655433 333 3445566789999999987644
No 88
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=65.57 E-value=2.9 Score=35.23 Aligned_cols=44 Identities=9% Similarity=0.132 Sum_probs=26.7
Q ss_pred HhcCEEEeCCCCCCCCc-ChHHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 141 KLVNGVLLTGGWAKKGL-YFQIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 141 d~VDGVLLTGG~DVdP~-yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
+..|+|+++||.. +. .......+.+...+...+ .-+|-+||-|.
T Consensus 104 ~~yD~l~ipGG~g--~~~~l~~~~~l~~~l~~~~~~-gk~iaaIC~Gp 148 (247)
T 3n7t_A 104 HDYGLMFVCGGHG--ALYDFPHAKHLQNIAQDIYKR-GGVIGAVCHGP 148 (247)
T ss_dssp GGCSEEEECCSTT--HHHHGGGCHHHHHHHHHHHHT-TCEEEEETTGG
T ss_pred hhCCEEEEeCCCc--hhhhcccCHHHHHHHHHHHHc-CCEEEEEChHH
Confidence 3479999999963 21 122233444444444433 35999999986
No 89
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=65.12 E-value=2.2 Score=38.31 Aligned_cols=73 Identities=16% Similarity=0.075 Sum_probs=40.9
Q ss_pred HHHHHHHHCCCeEEEeecCCCH--------------HHHHHH-HHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCC
Q 028817 112 SYVKFVESAGARVIPLIYNEPE--------------EILFEK-LKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKK 176 (203)
Q Consensus 112 sYVkaVe~AGA~PV~LP~~~~~--------------e~l~~~-Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g 176 (203)
.-++.+.++|..+.++-..... ..++++ .+..|.|+++||.. +........+.+...+...+
T Consensus 28 ~p~dvL~~Ag~~v~vvS~~~g~~V~ss~G~~~i~~d~~l~~v~~~~~DaLiVPGG~g--~~~l~~~~~l~~~Lr~~~~~- 104 (365)
T 3fse_A 28 IPCNGLKQAGFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGMA--PDKMRRNPNTVRFVQEAMEQ- 104 (365)
T ss_dssp HHHHHHHHTTCEEEEEESSSSCCEECTTSCCEECCSEETTTCCGGGCSEEEECCBTH--HHHHTTCHHHHHHHHHHHHT-
T ss_pred HHHHHHHHCCCEEEEEECCCCceeecCCCceEEeCCCCHhhCCCcCCCEEEEECCcc--hhhccCCHHHHHHHHHHHHC-
Confidence 3446677788777666443211 001111 23589999999973 22222233444444444433
Q ss_pred CCcceEeeCCc
Q 028817 177 QSLVHGITGDV 187 (203)
Q Consensus 177 ~~PV~Gic~~~ 187 (203)
.-+|.+||.|.
T Consensus 105 gk~IaAIC~G~ 115 (365)
T 3fse_A 105 GKLVAAVCHGP 115 (365)
T ss_dssp TCEEEEETTTH
T ss_pred CCEEEEECHHH
Confidence 25999999986
No 90
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=64.70 E-value=27 Score=28.35 Aligned_cols=63 Identities=13% Similarity=0.002 Sum_probs=38.9
Q ss_pred CCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHH----HHHH-HHhcCEEEeCCCC
Q 028817 82 NRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEI----LFEK-LKLVNGVLLTGGW 152 (203)
Q Consensus 82 ~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~----l~~~-Ld~VDGVLLTGG~ 152 (203)
.+.+||+....... ..+..+.+..-++.++.|...++.....+.+. ++.+ -..+|||++.+..
T Consensus 2 ~~~~Igvi~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~ 69 (330)
T 3uug_A 2 DKGSVGIAMPTKSS--------ARWIDDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASID 69 (330)
T ss_dssp CCCEEEEEECCSSS--------THHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSS
T ss_pred CCcEEEEEeCCCcc--------hHHHHHHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 35689987764321 12333455555677888998888776555432 2332 2479999998743
No 91
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=64.63 E-value=20 Score=29.74 Aligned_cols=76 Identities=11% Similarity=0.016 Sum_probs=49.8
Q ss_pred hHHHHHHHHHCCCeEEE-eecCCCHHHHHHHHHhcCEEEe------CCCCCCCCcChHHHHHHHHHHHHHHhCCC-Ccce
Q 028817 110 AASYVKFVESAGARVIP-LIYNEPEEILFEKLKLVNGVLL------TGGWAKKGLYFQIVEKIFKHEAIYERKKQ-SLVH 181 (203)
Q Consensus 110 ~~sYVkaVe~AGA~PV~-LP~~~~~e~l~~~Ld~VDGVLL------TGG~DVdP~yY~~~~~I~~~AL~~n~~g~-~PV~ 181 (203)
....++.+++.|..+.+ |....+.+.++++++.+|-|++ .||+...|.-.+..+.+=++.-+ +|- .+ .
T Consensus 95 ~~~~i~~i~~~G~k~gv~lnp~tp~~~~~~~l~~~D~VlvmsV~pGfggQ~f~~~~l~kI~~lr~~~~~---~~~~~~-I 170 (231)
T 3ctl_A 95 AFRLIDEIRRHDMKVGLILNPETPVEAMKYYIHKADKITVMTVDPGFAGQPFIPEMLDKLAELKAWRER---EGLEYE-I 170 (231)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGGCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHH---HTCCCE-E
T ss_pred HHHHHHHHHHcCCeEEEEEECCCcHHHHHHHHhcCCEEEEeeeccCcCCccccHHHHHHHHHHHHHHhc---cCCCce-E
Confidence 46788889999988744 4444567788999999998874 45677677666666665444332 222 24 4
Q ss_pred EeeCCccc
Q 028817 182 GITGDVVQ 189 (203)
Q Consensus 182 Gic~~~~~ 189 (203)
.+=||+=.
T Consensus 171 ~VdGGI~~ 178 (231)
T 3ctl_A 171 EVDGSCNQ 178 (231)
T ss_dssp EEESCCST
T ss_pred EEECCcCH
Confidence 55677533
No 92
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=64.47 E-value=7.6 Score=31.62 Aligned_cols=69 Identities=13% Similarity=-0.010 Sum_probs=39.0
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHH-HHHHCCCeEEEeecC-CCHHHHH----HHH-HhcCEEEeCCCCC
Q 028817 81 NNRPVIGILSHPGDGASGRLNNSKNASYIAASYVK-FVESAGARVIPLIYN-EPEEILF----EKL-KLVNGVLLTGGWA 153 (203)
Q Consensus 81 ~~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVk-aVe~AGA~PV~LP~~-~~~e~l~----~~L-d~VDGVLLTGG~D 153 (203)
.+||.|+|.+.-.+- ..+. .-....++. .+++.|+.++-.... ++.+.+. +.+ +.+|-||.|||..
T Consensus 28 ~~~~rvaIistGdEl-----~~G~--~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVIttGGts 100 (185)
T 3rfq_A 28 LVVGRALVVVVDDRT-----AHGD--EDHSGPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVGGTG 100 (185)
T ss_dssp -CCEEEEEEEECHHH-----HTTC--CCSHHHHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESCCS
T ss_pred CCCCEEEEEEECccc-----CCCC--cCcHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 457889987553211 1111 112333444 478899988754433 3444444 344 4689999999976
Q ss_pred CCC
Q 028817 154 KKG 156 (203)
Q Consensus 154 VdP 156 (203)
+.+
T Consensus 101 ~g~ 103 (185)
T 3rfq_A 101 VTP 103 (185)
T ss_dssp SST
T ss_pred CCC
Confidence 544
No 93
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Probab=64.11 E-value=4.7 Score=39.49 Aligned_cols=74 Identities=9% Similarity=-0.008 Sum_probs=42.8
Q ss_pred HHHHHHHHHCCCeEEEeecCCC------------HHHHHHH-HHhcCEEEeCCCC-CCCCcChHHHHHHHHHHHHHHhCC
Q 028817 111 ASYVKFVESAGARVIPLIYNEP------------EEILFEK-LKLVNGVLLTGGW-AKKGLYFQIVEKIFKHEAIYERKK 176 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~------------~e~l~~~-Ld~VDGVLLTGG~-DVdP~yY~~~~~I~~~AL~~n~~g 176 (203)
..-++.++++|..+.++-.... ...+++. ....|+|+++||. .. ........+.+.+.+...+|
T Consensus 551 ~~p~dvL~~AG~~V~ivS~~gg~V~ss~G~~v~~d~~l~~v~~~~yDaViVPGG~~~~--~~l~~~~~l~~~Lr~~~~~g 628 (715)
T 1sy7_A 551 DAAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAA--ETLSKNGRALHWIREAFGHL 628 (715)
T ss_dssp HHHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHH--HHHHTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCEEEEEECCCCceecCCCceEecccccccCCcccCCEEEEcCCcccH--hhhccCHHHHHHHHHHHhCC
Confidence 3455678889998888765321 1112221 3467999999994 21 11112234445555544433
Q ss_pred CCcceEeeCCc
Q 028817 177 QSLVHGITGDV 187 (203)
Q Consensus 177 ~~PV~Gic~~~ 187 (203)
-+|.+||.|.
T Consensus 629 -K~IaAIC~G~ 638 (715)
T 1sy7_A 629 -KAIGATGEAV 638 (715)
T ss_dssp -CEEEEETTHH
T ss_pred -CEEEEECHHH
Confidence 4999999985
No 94
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=62.19 E-value=8.8 Score=30.13 Aligned_cols=75 Identities=8% Similarity=0.103 Sum_probs=42.7
Q ss_pred CEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHH-HHHCCCeEEEeecCC-C-------------HHHHHHHHHhcCEEEe
Q 028817 84 PVIGILSHPGDGASGRLNNSKNASYIAASYVKF-VESAGARVIPLIYNE-P-------------EEILFEKLKLVNGVLL 148 (203)
Q Consensus 84 PVIGIta~~~~~~~~~~~~~~~~syI~~sYVka-Ve~AGA~PV~LP~~~-~-------------~e~l~~~Ld~VDGVLL 148 (203)
.|+.|.++++.. .....+.+...+. +++.|+.+-.+.... + ...+.+.+...|+|+|
T Consensus 4 kilii~gS~r~~--------g~t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~ 75 (197)
T 2vzf_A 4 SIVAISGSPSRN--------STTAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIV 75 (197)
T ss_dssp EEEEEECCSSTT--------CHHHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEE
T ss_pred eEEEEECCCCCC--------ChHHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEE
Confidence 366677665421 1234555666677 777787766665432 1 2234456788899999
Q ss_pred CCCCCCCCcChHHHHHHHHHHHH
Q 028817 149 TGGWAKKGLYFQIVEKIFKHEAI 171 (203)
Q Consensus 149 TGG~DVdP~yY~~~~~I~~~AL~ 171 (203)
. .|.|++...-.++..++
T Consensus 76 ~-----sP~y~~~~p~~lK~~ld 93 (197)
T 2vzf_A 76 A-----TPIYKASYTGLLKAFLD 93 (197)
T ss_dssp E-----EECBTTBCCHHHHHHHT
T ss_pred E-----eCccCCCCCHHHHHHHH
Confidence 3 35555444444444444
No 95
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=61.33 E-value=29 Score=27.09 Aligned_cols=60 Identities=13% Similarity=0.101 Sum_probs=35.2
Q ss_pred CEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecC--CCHH----HHHHHHH-h-cCEEEeCCC
Q 028817 84 PVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYN--EPEE----ILFEKLK-L-VNGVLLTGG 151 (203)
Q Consensus 84 PVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~--~~~e----~l~~~Ld-~-VDGVLLTGG 151 (203)
+.||+....... ..+..+.+..-++.++.|...++.... .+.+ .++.+++ . +|||++.+.
T Consensus 1 ~~Ig~i~~~~~~--------~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~ 68 (276)
T 3ksm_A 1 PKLLLVLKGDSN--------AYWRQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPN 68 (276)
T ss_dssp CEEEEECSCSSS--------THHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCS
T ss_pred CeEEEEeCCCCC--------hHHHHHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 468887654321 122334455555677789888887632 3333 2333333 4 999999874
No 96
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=61.26 E-value=28 Score=27.65 Aligned_cols=61 Identities=7% Similarity=-0.013 Sum_probs=34.9
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHH----HHHHH-HhcCEEEeCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEI----LFEKL-KLVNGVLLTGG 151 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~----l~~~L-d~VDGVLLTGG 151 (203)
+.+||+....... ..+..+.+...+++++.|...++.....+.+. ++.++ ..+|||++.+.
T Consensus 2 ~~~Ig~i~~~~~~--------~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 67 (290)
T 2fn9_A 2 KGKMAIVISTLNN--------PWFVVLAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPT 67 (290)
T ss_dssp -CEEEEEESCSSS--------HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred ceEEEEEeCCCCC--------hHHHHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 3578887643211 11223444445567778988887765444432 33333 46999999864
No 97
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=61.25 E-value=25 Score=28.14 Aligned_cols=62 Identities=6% Similarity=-0.087 Sum_probs=34.9
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEe-ecCCCHHHHHHHH-----HhcCEEEeCCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPL-IYNEPEEILFEKL-----KLVNGVLLTGGW 152 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~L-P~~~~~e~l~~~L-----d~VDGVLLTGG~ 152 (203)
+..||+....... ..+..+.+..-++.++.|...+++ ....+.+.-.+.+ ..+|||++.+..
T Consensus 4 ~~~I~~i~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~ 71 (305)
T 3g1w_A 4 NETYMMITFQSGM--------DYWKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAID 71 (305)
T ss_dssp -CEEEEEESSTTS--------THHHHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSS
T ss_pred CceEEEEEccCCC--------hHHHHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 4567766554321 123334455555677789888874 4444444333333 459999998753
No 98
>1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus stearothermophilus} SCOP: c.86.1.1 PDB: 3b2b_A* 3uwd_A*
Probab=59.69 E-value=25 Score=32.32 Aligned_cols=77 Identities=12% Similarity=0.085 Sum_probs=54.2
Q ss_pred HHHHHHHCCCeEEEeecCC-----CHHHHHHHHHhcCEEEeCCC----------CC-----CCCcChHHHHHHHHHHHHH
Q 028817 113 YVKFVESAGARVIPLIYNE-----PEEILFEKLKLVNGVLLTGG----------WA-----KKGLYFQIVEKIFKHEAIY 172 (203)
Q Consensus 113 YVkaVe~AGA~PV~LP~~~-----~~e~l~~~Ld~VDGVLLTGG----------~D-----VdP~yY~~~~~I~~~AL~~ 172 (203)
|+..+...-.+|++.-... -...++.+++.+|.|++.|| .+ ++....+.++.|+++|.++
T Consensus 177 ~l~kal~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~SL~E~d~~~~a~~ll~~a~~~ 256 (394)
T 1php_A 177 VLGKALSNPDRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGKSLLEEDKIELAKSFMEKAKEK 256 (394)
T ss_dssp HHHHHHHSCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECTTHHHHHHHHTTCCCTTSCCCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCeEEEEcCcchhhHHHHHHHHHHhcCeeeeCcHHHHHHHHHcCCCCCccccchhhHHHHHHHHHHHHhc
Confidence 4444444668887665542 23578899999999999998 22 4556667899999999776
Q ss_pred HhCCCCcceEeeCCccc
Q 028817 173 ERKKQSLVHGITGDVVQ 189 (203)
Q Consensus 173 n~~g~~PV~Gic~~~~~ 189 (203)
+.+=-.||=-+|....-
T Consensus 257 g~~i~lPvD~vva~~f~ 273 (394)
T 1php_A 257 GVRFYMPVDVVVADRFA 273 (394)
T ss_dssp TCEEECCSEEEEESSSS
T ss_pred CCEEECCcchhhhhccC
Confidence 65433399888887543
No 99
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=59.64 E-value=18 Score=28.20 Aligned_cols=78 Identities=10% Similarity=0.055 Sum_probs=47.0
Q ss_pred CEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCC--CeEEEeecC--C-C--------------------------
Q 028817 84 PVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAG--ARVIPLIYN--E-P-------------------------- 132 (203)
Q Consensus 84 PVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AG--A~PV~LP~~--~-~-------------------------- 132 (203)
.|+.|.++++... ......+.+.+++.++++| ..+..+-.. . .
T Consensus 3 kilii~gS~r~~~------~s~t~~la~~~~~~~~~~g~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 76 (208)
T 2hpv_A 3 KLLVVKAHPLTKE------ESRSVRALETFLASYRETNPSDEIEILDVYAPETNMPEIDEELLSAWGALRAGAAFETLSE 76 (208)
T ss_dssp EEEEEECCSSCTT------TCHHHHHHHHHHHHHHHHCTTSEEEEEETTCGGGCCCCCCHHHHHHHHHHHHTCCGGGSCH
T ss_pred eEEEEEecCCCCC------CCHHHHHHHHHHHHHHHhCCCCeEEEeeCCcccCCCCcCCHHHHHhhcCcccccccccCCH
Confidence 4677888876311 1134467788888888876 766555432 1 0
Q ss_pred --------HHHHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHH
Q 028817 133 --------EEILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIY 172 (203)
Q Consensus 133 --------~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~ 172 (203)
.+.+.+.+...|+|+| ..|.|+...--.+|..+++
T Consensus 77 ~~~~~~~~~~~~~~~l~~aD~iv~-----~~P~y~~~~pa~lK~~iD~ 119 (208)
T 2hpv_A 77 NQQQKVARFNELTDQFLSADKVVI-----ANPMWNLNVPTRLKAWVDT 119 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHCSEEEE-----EEECBTTBCCHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhCCEEEE-----EeccccCCCCHHHHHHHHH
Confidence 1124456788899999 4588876544444444443
No 100
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=59.64 E-value=31 Score=27.32 Aligned_cols=68 Identities=12% Similarity=0.138 Sum_probs=37.6
Q ss_pred CCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHH-----HhcCEEEeCCCC
Q 028817 82 NRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKL-----KLVNGVLLTGGW 152 (203)
Q Consensus 82 ~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~L-----d~VDGVLLTGG~ 152 (203)
+..+||+........ ......+..+.+...+++++.|...++.....+.+...+++ ..+|||++.+..
T Consensus 7 ~~~~Igvi~~~~~~~---~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~ 79 (292)
T 3k4h_A 7 TTKTLGLVMPSSASK---AFQNPFFPEVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSR 79 (292)
T ss_dssp CCCEEEEECSSCHHH---HTTSTHHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCB
T ss_pred CCCEEEEEecCCccc---cccCHHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 346899886641000 00011223344555556788898888876654333322222 479999998754
No 101
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=59.57 E-value=10 Score=29.38 Aligned_cols=90 Identities=14% Similarity=0.182 Sum_probs=47.5
Q ss_pred CEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCC---------------CHHHHHHHHHhcCEEEe
Q 028817 84 PVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNE---------------PEEILFEKLKLVNGVLL 148 (203)
Q Consensus 84 PVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~---------------~~e~l~~~Ld~VDGVLL 148 (203)
.|+.|.++++.. .....+.+...+.++ .|+.+-++-... +.+.+.+.+...|+|+|
T Consensus 8 kilii~gS~r~~--------g~t~~la~~i~~~l~-~g~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~ 78 (193)
T 1rtt_A 8 KVLGISGSLRSG--------SYNSAALQEAIGLVP-PGMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLF 78 (193)
T ss_dssp EEEEEESCCSTT--------CHHHHHHHHHHTTCC-TTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEE
T ss_pred eEEEEECCCCCC--------ChHHHHHHHHHHhcc-CCCeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHHhCCEEEE
Confidence 366777776531 122234444444444 566666554322 12345567888899999
Q ss_pred CCCCCCCCcChHHHHHHHHHHHHHHh-------CCCC-cceEeeCCc
Q 028817 149 TGGWAKKGLYFQIVEKIFKHEAIYER-------KKQS-LVHGITGDV 187 (203)
Q Consensus 149 TGG~DVdP~yY~~~~~I~~~AL~~n~-------~g~~-PV~Gic~~~ 187 (203)
..|.|+....-.++..+++-. +|.. -+.++|||.
T Consensus 79 -----~sP~y~~~~p~~lK~~iD~~~~~~~~~l~gK~~~~~~t~gg~ 120 (193)
T 1rtt_A 79 -----ATPEYNYSMAGVLKNAIDWASRPPEQPFSGKPAAILGASAGR 120 (193)
T ss_dssp -----ECCEETTEECHHHHHHHHHHTCSSSCTTTTCEEEEEEECSST
T ss_pred -----EccccccCcCHHHHHHHHHhccccCcccCCCeEEEEEeCCCC
Confidence 347777544444444444332 2333 556667664
No 102
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=59.50 E-value=28 Score=27.64 Aligned_cols=61 Identities=10% Similarity=0.083 Sum_probs=37.5
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHH-----HhcCEEEeCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKL-----KLVNGVLLTGG 151 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~L-----d~VDGVLLTGG 151 (203)
..+||+....... ..+..+.+..-++.++.|...++.....+.+...+.+ ..+|||++.+.
T Consensus 8 ~~~Ig~i~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 73 (293)
T 3l6u_A 8 RNIVGFTIVNDKH--------EFAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTL 73 (293)
T ss_dssp -CEEEEEESCSCS--------HHHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred CcEEEEEEecCCc--------HHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 4689987754321 1223344555556778899998888765554333333 36999999765
No 103
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=59.35 E-value=49 Score=24.81 Aligned_cols=76 Identities=14% Similarity=0.239 Sum_probs=49.9
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHH-HHHCCCeEEE-------eecCCCHHHHHHHHHhcCEEEeCCCCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKF-VESAGARVIP-------LIYNEPEEILFEKLKLVNGVLLTGGWAK 154 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVka-Ve~AGA~PV~-------LP~~~~~e~l~~~Ld~VDGVLLTGG~DV 154 (203)
+.+++|++|+.. -..+|+.+.-++. -++.|-..-+ +-...+.+ -++..|+|||.+...+
T Consensus 3 ~kivaVTaCptG---------iAhTymAaeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~----~I~~Ad~VIiA~d~~v 69 (106)
T 2r48_A 3 AKLLAITSCPNG---------IAHTYMAAENLQKAADRLGVSIKVETQGGIGVENKLTEE----EIREADAIIIAADRSV 69 (106)
T ss_dssp CEEEEEEECSSC---------SHHHHHHHHHHHHHHHHHTCEEEEEEEETTEEESCCCHH----HHHHCSEEEEEESSCC
T ss_pred ceEEEEecCCCc---------HHHHHHHHHHHHHHHHHCCCeEEEEecCCCCccCCCCHH----HHHhCCEEEEEeCCcc
Confidence 358999999843 2456776666664 4556766544 11111232 4789999999999988
Q ss_pred CCcChH--------------HHHHHHHHHHH
Q 028817 155 KGLYFQ--------------IVEKIFKHEAI 171 (203)
Q Consensus 155 dP~yY~--------------~~~~I~~~AL~ 171 (203)
+..+|. ..+.++++++.
T Consensus 70 ~~~RF~GK~v~~~~v~~ai~~p~~~l~~a~~ 100 (106)
T 2r48_A 70 NKDRFIGKKLLSVGVQDGIRKPEELIQKALN 100 (106)
T ss_dssp CCGGGTTSBEEEECHHHHHHCHHHHHHHHHH
T ss_pred CHhHcCCCeEEEeCHHHHHHCHHHHHHHHHh
Confidence 888883 24566777664
No 104
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=59.26 E-value=10 Score=31.65 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=31.5
Q ss_pred HHHHHHHHHCCCeEEEeecCC----CHHHHHHHH---HhcCEEEeCCCC
Q 028817 111 ASYVKFVESAGARVIPLIYNE----PEEILFEKL---KLVNGVLLTGGW 152 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~----~~e~l~~~L---d~VDGVLLTGG~ 152 (203)
..+.+.+++.|+.++.+|... +.+.+.+.+ +..|+|+||=..
T Consensus 38 ~~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~l~~~~~~d~lifTS~n 86 (286)
T 1jr2_A 38 DPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLIFTSPR 86 (286)
T ss_dssp CHHHHHHHTTTCEEEEEECEEEEECCHHHHHHHHTCGGGCSEEEECCHH
T ss_pred cHHHHHHHHCCCceEEEeeEEEecCCHHHHHHHHhCcccccEEEEeCHH
Confidence 667888999999999999642 334455555 678999999753
No 105
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=59.18 E-value=27 Score=27.87 Aligned_cols=80 Identities=10% Similarity=-0.014 Sum_probs=51.9
Q ss_pred CEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCC--CHHHHHHHHHhcCEEEeCCCCCCCCcChHH
Q 028817 84 PVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNE--PEEILFEKLKLVNGVLLTGGWAKKGLYFQI 161 (203)
Q Consensus 84 PVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~--~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~ 161 (203)
.|..|.+++..... .+.....+.+.+++.++++|+.+..+-... +.+.+.+.+...|+|+| ..|.|+..
T Consensus 14 ~iLii~gsP~~~~s----~~s~~~~l~~~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~~AD~iV~-----~~P~y~~s 84 (204)
T 2amj_A 14 NILIINGAKKFAHS----NGQLNDTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFLWADVVIW-----QMPGWWMG 84 (204)
T ss_dssp EEEEEECCC----------CHHHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHHCSEEEE-----EEECBTTB
T ss_pred CEEEEEcCCCcccC----cCcHHHHHHHHHHHHHHHcCCEEEEEeCCccccHHHHHHHHHhCCEEEE-----ECCccccC
Confidence 46778888863210 012334567788888888888876666543 45677888999999999 56888854
Q ss_pred ----HHHHHHHHHHH
Q 028817 162 ----VEKIFKHEAIY 172 (203)
Q Consensus 162 ----~~~I~~~AL~~ 172 (203)
-|..+++++..
T Consensus 85 ~pa~LK~~iDrv~~~ 99 (204)
T 2amj_A 85 APWTVKKYIDDVFTE 99 (204)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhc
Confidence 45566655543
No 106
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=59.05 E-value=14 Score=29.77 Aligned_cols=44 Identities=18% Similarity=0.247 Sum_probs=28.5
Q ss_pred HHHHH-HHHHCCCeEEEeecC-CCHHH----HHHHHHhcCEEEeCCCCCC
Q 028817 111 ASYVK-FVESAGARVIPLIYN-EPEEI----LFEKLKLVNGVLLTGGWAK 154 (203)
Q Consensus 111 ~sYVk-aVe~AGA~PV~LP~~-~~~e~----l~~~Ld~VDGVLLTGG~DV 154 (203)
..++. .+++.|+.+.-.... ++.+. +.+.++++|-|+.|||.-+
T Consensus 25 ~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~DlVittGG~g~ 74 (172)
T 3kbq_A 25 AAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSSGGLGP 74 (172)
T ss_dssp HHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEEESCCSS
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEEcCCCcC
Confidence 34444 467899988655443 34443 4455677999999999643
No 107
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=58.27 E-value=32 Score=27.35 Aligned_cols=63 Identities=16% Similarity=0.104 Sum_probs=38.7
Q ss_pred CCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHH-----HhcCEEEeCCCC
Q 028817 82 NRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKL-----KLVNGVLLTGGW 152 (203)
Q Consensus 82 ~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~L-----d~VDGVLLTGG~ 152 (203)
+..+||+....... ..+..+.+..-+++++.|...++.....+.+...+++ ..+|||++.+..
T Consensus 7 ~~~~Igvv~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 74 (291)
T 3egc_A 7 RSNVVGLIVSDIEN--------VFFAEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSE 74 (291)
T ss_dssp CCCEEEEEESCTTS--------HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCS
T ss_pred CCcEEEEEECCCcc--------hHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 34689987653221 1223344455556777899988888765544333222 469999998864
No 108
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=58.19 E-value=33 Score=27.74 Aligned_cols=62 Identities=15% Similarity=0.056 Sum_probs=37.3
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHH-----HhcCEEEeCCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKL-----KLVNGVLLTGGW 152 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~L-----d~VDGVLLTGG~ 152 (203)
..+||+....... ..+..+.+..-+.+++.|-..++.....+.+.-.+++ ..+|||++.+..
T Consensus 15 s~~Igvi~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 81 (303)
T 3kke_A 15 SGTIGLIVPDVNN--------AVFADMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRRE 81 (303)
T ss_dssp --CEEEEESCTTS--------TTHHHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCT
T ss_pred CCEEEEEeCCCcC--------hHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3578987654321 1233344555566778899888887655444333333 369999998864
No 109
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=57.79 E-value=11 Score=30.71 Aligned_cols=39 Identities=23% Similarity=0.257 Sum_probs=23.9
Q ss_pred HHHHCCCe--EE---EeecCCCHHHH----HHHHH--hcCEEEeCCCCCCCC
Q 028817 116 FVESAGAR--VI---PLIYNEPEEIL----FEKLK--LVNGVLLTGGWAKKG 156 (203)
Q Consensus 116 aVe~AGA~--PV---~LP~~~~~e~l----~~~Ld--~VDGVLLTGG~DVdP 156 (203)
.++++|+. ++ ++| ++.+.+ .+.++ .+|=||.|||.-+.+
T Consensus 31 ~L~~~G~~~~v~~~~iV~--Dd~~~I~~al~~a~~~~~~DlVitTGGtg~g~ 80 (195)
T 1di6_A 31 WLTSALTTPFELETRLIP--DEQAIIEQTLCELVDEMSCHLVLTTGGTGPAR 80 (195)
T ss_dssp HHHHHBCSCEEEEEEEEE--SCHHHHHHHHHHHHHTSCCSEEEEESCCSSST
T ss_pred HHHHcCCCCceEEEEEeC--CCHHHHHHHHHHHHhcCCCCEEEECCCCCCCC
Confidence 46778876 22 333 344443 44455 589999999975544
No 110
>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}
Probab=57.35 E-value=2 Score=34.86 Aligned_cols=43 Identities=5% Similarity=0.026 Sum_probs=25.5
Q ss_pred hcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 142 LVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 142 ~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
..|.|+++||... ........+.+...+...+| -+|.+||.|.
T Consensus 65 ~~D~livpGG~~~--~~~~~~~~~~~~l~~~~~~~-k~iaaiC~G~ 107 (211)
T 3mgk_A 65 IEKILFVPGGSGT--REKVNDDNFINFIGNMVKES-KYIISVCTGS 107 (211)
T ss_dssp SEEEEEECCSTHH--HHHTTCHHHHHHHHHHHHHC-SEEEECTTHH
T ss_pred CCCEEEECCCcch--hhhcCCHHHHHHHHHHHHcC-CEEEEEchHH
Confidence 4699999999631 11212234444444444332 5899999985
No 111
>1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability, crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga maritima} SCOP: c.86.1.1
Probab=56.58 E-value=25 Score=32.35 Aligned_cols=77 Identities=5% Similarity=0.104 Sum_probs=53.4
Q ss_pred HHHHHHHCCCeEEEeecCC-----CHHHHHHHHHhcCEEEeCCCC----------C-----CCCcChHHHHHHHHHHHHH
Q 028817 113 YVKFVESAGARVIPLIYNE-----PEEILFEKLKLVNGVLLTGGW----------A-----KKGLYFQIVEKIFKHEAIY 172 (203)
Q Consensus 113 YVkaVe~AGA~PV~LP~~~-----~~e~l~~~Ld~VDGVLLTGG~----------D-----VdP~yY~~~~~I~~~AL~~ 172 (203)
|+..+...-.+|++.-... -...++.+++.+|.|++.||- + ++....+.++.|+++|.++
T Consensus 176 ~l~k~l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~SL~E~d~~~~a~~ll~ka~~~ 255 (398)
T 1vpe_A 176 FLSKVTYNPEKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSRVEEDKIDLAKELVEKAKEK 255 (398)
T ss_dssp HHHHHHHCCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECTTTHHHHHHHTSCCCTTSCCCGGGHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCeEEEEcCcchhhHHHHHHHHHHhcCeeEeCcHHHHHHHHHcCCCCCchhcChhhHHHHHHHHHHHHhc
Confidence 4444444668887665542 235788999999999999982 2 3556667899999999665
Q ss_pred HhCCCCcceEeeCCccc
Q 028817 173 ERKKQSLVHGITGDVVQ 189 (203)
Q Consensus 173 n~~g~~PV~Gic~~~~~ 189 (203)
+.+=-.||=-+|....-
T Consensus 256 g~~i~lPvD~vva~~f~ 272 (398)
T 1vpe_A 256 GVEIVLPVDAVIAQKIE 272 (398)
T ss_dssp TCEEECCSEEEEESSCS
T ss_pred CCEEECCceeehhhccc
Confidence 54322399888887543
No 112
>16pk_A PGK, 3-phosphoglycerate kinase; ternary complex, glycolysis, transferase, bisubstrate, analog; HET: BIS EPE; 1.60A {Trypanosoma brucei} SCOP: c.86.1.1 PDB: 13pk_A*
Probab=56.53 E-value=18 Score=33.45 Aligned_cols=73 Identities=10% Similarity=0.106 Sum_probs=51.0
Q ss_pred HHCCCeEEEeecCC-----CHHHHHHHHHhcCEEEeCCC----------CC-----CCCcChHHHHHHHHHHHHHHhCCC
Q 028817 118 ESAGARVIPLIYNE-----PEEILFEKLKLVNGVLLTGG----------WA-----KKGLYFQIVEKIFKHEAIYERKKQ 177 (203)
Q Consensus 118 e~AGA~PV~LP~~~-----~~e~l~~~Ld~VDGVLLTGG----------~D-----VdP~yY~~~~~I~~~AL~~n~~g~ 177 (203)
...-.+|++.-... -...++.+++++|.|++.|| .+ ++....+.++.|+++|.+++.+=-
T Consensus 200 l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~Sl~E~d~~~~A~~ll~ka~~~g~~i~ 279 (415)
T 16pk_A 200 LGNPPRPLVAIVGGAKVSDKIQLLDNMLQRIDYLLIGGAMAYTFLKAQGYSIGKSKCEESKLEFARSLLKKAEDRKVQVI 279 (415)
T ss_dssp HSCCCSSEEEEECSSCSGGGHHHHHHHGGGCSEEEECTTHHHHHHHHHTCCCTTCCCCGGGHHHHHHHHHHHHHTTCEEE
T ss_pred hcCCCCCeEEEEcCcchhhHHHHHHHHHHhcCeeEeCcHHHHHHHHHcCCCcCccccChhhHHHHHHHHHHHHhcCCEEE
Confidence 33467887665532 34688999999999999998 22 456666789999999955443322
Q ss_pred CcceEeeCCcccc
Q 028817 178 SLVHGITGDVVQK 190 (203)
Q Consensus 178 ~PV~Gic~~~~~~ 190 (203)
.||=-+|......
T Consensus 280 lPvD~vva~~f~~ 292 (415)
T 16pk_A 280 LPIDHVCHTEFKA 292 (415)
T ss_dssp CCSSEEEESSSSC
T ss_pred CCceeehhhcccC
Confidence 2998888865433
No 113
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=56.33 E-value=24 Score=27.99 Aligned_cols=61 Identities=8% Similarity=0.036 Sum_probs=33.4
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHH-----HhcCEEEeCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKL-----KLVNGVLLTGG 151 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~L-----d~VDGVLLTGG 151 (203)
|.+||+....... ..+..+.+..-+++++.|-..++.....+.+.-.+.+ .++|||++.+.
T Consensus 1 ~~~Igvi~~~~~~--------~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (271)
T 2dri_A 1 KDTIALVVSTLNN--------PFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPT 66 (271)
T ss_dssp CCEEEEEESCSSS--------HHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCS
T ss_pred CcEEEEEecCCCC--------HHHHHHHHHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4578887643211 1122334444445667788877766544443222222 35999999753
No 114
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=56.26 E-value=61 Score=26.46 Aligned_cols=85 Identities=13% Similarity=0.008 Sum_probs=46.2
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHH----HHHHHH-Hh--cCEEEeCCCCCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEE----ILFEKL-KL--VNGVLLTGGWAKK 155 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e----~l~~~L-d~--VDGVLLTGG~DVd 155 (203)
..+||++...... ..+..+.+..-+++++.|...++.....+.+ .++.++ +. +|||++.+...
T Consensus 5 s~~Igvi~~~~~~--------~~~~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~-- 74 (332)
T 2rjo_A 5 QTTLACSFRSLTN--------PYYTAFNKGAQSFAKSVGLPYVPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPNDS-- 74 (332)
T ss_dssp CCEEEEEESCTTS--------HHHHHHHHHHHHHHHHHTCCEEEEECTTCHHHHHHHHHHHHHHTTTCEEEEECCSSH--
T ss_pred ccEEEEEecCCCc--------HHHHHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCCCH--
Confidence 3578987653211 1122334444456677898888776554433 234444 35 99999976431
Q ss_pred CcChHHHHHHHHHHHHHHhCCCCcceEeeC
Q 028817 156 GLYFQIVEKIFKHEAIYERKKQSLVHGITG 185 (203)
Q Consensus 156 P~yY~~~~~I~~~AL~~n~~g~~PV~Gic~ 185 (203)
.....+++++.+.+ .||..+..
T Consensus 75 ----~~~~~~~~~~~~~~----iPvV~~~~ 96 (332)
T 2rjo_A 75 ----ADARVIVEACSKAG----AYVTTIWN 96 (332)
T ss_dssp ----HHHHHHHHHHHHHT----CEEEEESC
T ss_pred ----HHHHHHHHHHHHCC----CeEEEECC
Confidence 22223445444332 68776643
No 115
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=56.08 E-value=45 Score=27.45 Aligned_cols=62 Identities=15% Similarity=0.040 Sum_probs=37.8
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHH-----HhcCEEEeCCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKL-----KLVNGVLLTGGW 152 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~L-----d~VDGVLLTGG~ 152 (203)
...||+....... ..+.-+.+..-+.+++.|-..++.....+.+.-.+++ ..+|||++.+..
T Consensus 62 ~~~Igvi~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~ 128 (339)
T 3h5o_A 62 SRTVLVLIPSLAN--------TVFLETLTGIETVLDAAGYQMLIGNSHYDAGQELQLLRAYLQHRPDGVLITGLS 128 (339)
T ss_dssp -CEEEEEESCSTT--------CTTHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CCEEEEEeCCCCC--------HHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 4579987654321 1223344555556777899888877665554444444 469999998854
No 116
>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A
Probab=55.39 E-value=4.6 Score=33.25 Aligned_cols=44 Identities=7% Similarity=0.021 Sum_probs=27.0
Q ss_pred HhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 141 KLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 141 d~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
+..|.|+++||... ........+.+...+.. +..-+|.+||-|.
T Consensus 64 ~~~D~livpGG~g~--~~~~~~~~l~~~lr~~~-~~g~~v~aiC~G~ 107 (231)
T 3noq_A 64 PPLDVICIPGGTGV--GALMEDPQALAFIRQQA-ARARYVTSVSTGS 107 (231)
T ss_dssp CCCSEEEECCSTTH--HHHTTCHHHHHHHHHHH-TTCSEEEEETTHH
T ss_pred CcCCEEEECCCCCh--hhhccCHHHHHHHHHHH-hcCCEEEEECHHH
Confidence 45899999999532 11222234444444444 3335999999986
No 117
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=55.25 E-value=2.8 Score=33.64 Aligned_cols=73 Identities=16% Similarity=0.178 Sum_probs=41.2
Q ss_pred HHHHHHHHCCCeEEEeecCC-CH------------HHHHHH-HHhcCEEEeCCCC-CCCCcChHHHHHHHHHHHHHHhCC
Q 028817 112 SYVKFVESAGARVIPLIYNE-PE------------EILFEK-LKLVNGVLLTGGW-AKKGLYFQIVEKIFKHEAIYERKK 176 (203)
Q Consensus 112 sYVkaVe~AGA~PV~LP~~~-~~------------e~l~~~-Ld~VDGVLLTGG~-DVdP~yY~~~~~I~~~AL~~n~~g 176 (203)
.-++.++++|..+.++-... .. ..+++. .+..|.|+++||. ... .......+.+...+...+
T Consensus 27 ~~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~--~l~~~~~l~~~l~~~~~~- 103 (208)
T 3ot1_A 27 IIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGGAQ--AFADSTALLALIDAFSQQ- 103 (208)
T ss_dssp HHHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEEECCCHHHHH--HHHTCHHHHHHHHHHHHT-
T ss_pred HHHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEEECCCchHHH--HHhhCHHHHHHHHHHHHc-
Confidence 33466778887776665531 00 012222 3568999999995 211 112223444444444432
Q ss_pred CCcceEeeCCc
Q 028817 177 QSLVHGITGDV 187 (203)
Q Consensus 177 ~~PV~Gic~~~ 187 (203)
.-+|.+||.|.
T Consensus 104 gk~i~aiC~G~ 114 (208)
T 3ot1_A 104 GKLVAAICATP 114 (208)
T ss_dssp TCEEEEETTHH
T ss_pred CCEEEEEChhH
Confidence 35999999997
No 118
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=55.21 E-value=30 Score=27.22 Aligned_cols=73 Identities=12% Similarity=0.079 Sum_probs=44.7
Q ss_pred EEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCC----------------------CHHHHHHHHHh
Q 028817 85 VIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNE----------------------PEEILFEKLKL 142 (203)
Q Consensus 85 VIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~----------------------~~e~l~~~Ld~ 142 (203)
|+.|.++++.. .....+.+.+++.+ +.|..+..+-... +.+.+.+.+..
T Consensus 3 iLiI~gspr~~--------s~t~~l~~~~~~~~-~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 73 (196)
T 3lcm_A 3 ILIVYTHPNPT--------SFNAEILKQVQTNL-SKEHTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEMEKYRDLVTW 73 (196)
T ss_dssp EEEEECCSCTT--------SHHHHHHHHHHHHS-CTTSEEEEEETTTTTCCCCCCCCSSSCGGGGGGCGGGHHHHHHHHH
T ss_pred EEEEEeCCCCC--------ChHHHHHHHHHHHh-cCCCeEEEEEcccCCCCccCChHHHHhhcCCCCcHHHHHHHHHHHh
Confidence 66777887531 12335666666666 6677766554321 12466678899
Q ss_pred cCEEEeCCCCCCCCcChHHHHHHHHHHHH
Q 028817 143 VNGVLLTGGWAKKGLYFQIVEKIFKHEAI 171 (203)
Q Consensus 143 VDGVLLTGG~DVdP~yY~~~~~I~~~AL~ 171 (203)
.|+|+| ..|.|+...--.+|-.++
T Consensus 74 AD~iV~-----~~P~y~~~~pa~LK~~iD 97 (196)
T 3lcm_A 74 ADHLIF-----IFPIWWSGMPAILKGFID 97 (196)
T ss_dssp CSEEEE-----EEECBTTBCCHHHHHHHH
T ss_pred CCEEEE-----ECchhhccccHHHHHHHH
Confidence 999999 468888654444444444
No 119
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=54.98 E-value=36 Score=27.11 Aligned_cols=61 Identities=15% Similarity=0.232 Sum_probs=36.5
Q ss_pred CCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCe-EEEeecCCCHHH----HHHHH-HhcCEEEeCC
Q 028817 82 NRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGAR-VIPLIYNEPEEI----LFEKL-KLVNGVLLTG 150 (203)
Q Consensus 82 ~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~-PV~LP~~~~~e~----l~~~L-d~VDGVLLTG 150 (203)
+..+||+....... ..+..+.+..-+.+++.|-. .++.....+.+. ++.++ ..+|||++.+
T Consensus 9 ~~~~Igvi~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 9 KSKMIGIIIPDLNN--------RFYAQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp CCCEEEEEESCTTS--------HHHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CCCEEEEEeCCCCC--------hhHHHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc
Confidence 34689987654221 12233445555567778998 777666555443 22332 4699999988
No 120
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=54.73 E-value=33 Score=26.73 Aligned_cols=62 Identities=16% Similarity=0.111 Sum_probs=35.1
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHH----HHHHH-HhcCEEEeCCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEI----LFEKL-KLVNGVLLTGGW 152 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~----l~~~L-d~VDGVLLTGG~ 152 (203)
..+||+....... ..+.-+.+..-+.+++.|-..++.....+.+. ++.++ ..+|||++.+..
T Consensus 2 s~~Igvi~~~~~~--------~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 68 (255)
T 1byk_A 2 DKVVAIIVTRLDS--------LSENLAVQTMLPAFYEQGYDPIMMESQFSPQLVAEHLGVLKRRNIDGVVLFGFT 68 (255)
T ss_dssp CCEEEEEESCTTC--------HHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHTTTCCEEEEECCT
T ss_pred CCEEEEEeCCCCC--------ccHHHHHHHHHHHHHHcCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecCc
Confidence 3478887643211 11222334444456778988888775544432 33333 469999998753
No 121
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=54.48 E-value=25 Score=27.69 Aligned_cols=60 Identities=17% Similarity=0.087 Sum_probs=35.7
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHH-----HhcCEEEeCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKL-----KLVNGVLLTG 150 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~L-----d~VDGVLLTG 150 (203)
..+||+....... ..+.-+.+..-+++++.|...++.....+.+.-.+++ ..+|||++.+
T Consensus 8 ~~~Ig~i~~~~~~--------~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~ 72 (277)
T 3e61_A 8 SKLIGLLLPDMSN--------PFFTLIARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTA 72 (277)
T ss_dssp --CEEEEESCTTS--------HHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECG
T ss_pred CCEEEEEECCCCC--------HHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEec
Confidence 3578887653221 1223344555556777899888887765544333332 4699999987
No 122
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=53.76 E-value=43 Score=26.45 Aligned_cols=61 Identities=15% Similarity=0.129 Sum_probs=37.1
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHH----HHHHH-HhcCEEEeCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEI----LFEKL-KLVNGVLLTGG 151 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~----l~~~L-d~VDGVLLTGG 151 (203)
..+||+....... .....+.+..-+++++.|...++.....+.+. ++.++ ..+|||++.+.
T Consensus 5 ~~~Ig~i~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 70 (291)
T 3l49_A 5 GKTIGITAIGTDH--------DWDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLG 70 (291)
T ss_dssp TCEEEEEESCCSS--------HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESS
T ss_pred CcEEEEEeCCCCC--------hHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4578987663221 12223445555567788999888876655433 23322 46999998765
No 123
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=53.69 E-value=53 Score=24.60 Aligned_cols=64 Identities=9% Similarity=0.173 Sum_probs=42.9
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHH-HHHCCCeEEE-------eecCCCHHHHHHHHHhcCEEEeCCCCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKF-VESAGARVIP-------LIYNEPEEILFEKLKLVNGVLLTGGWAK 154 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVka-Ve~AGA~PV~-------LP~~~~~e~l~~~Ld~VDGVLLTGG~DV 154 (203)
+.+++|++|+.. -..+|+.+.-++. -++.|-..-+ +-...+.+ -++..|+|||.+...+
T Consensus 3 ~kivaVTaCptG---------iAhTymAaeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~----~I~~Ad~VIiA~d~~v 69 (106)
T 2r4q_A 3 AKILAVTACPTG---------IAHTFMAADALKEKAKELGVEIKVETNGSSGIKHKLTAQ----EIEDAPAIIVAADKQV 69 (106)
T ss_dssp CCEEEEEECSCC-----------CHHHHHHHHHHHHHHHTCCEEEEEEETTEEESCCCHH----HHHHCSCEEEEESSCC
T ss_pred ceEEEEecCCCc---------HHHHHHHHHHHHHHHHHCCCeEEEEecCCCCccCCCCHH----HHHhCCEEEEEeCCcc
Confidence 458999999853 2456777766664 4667766544 11111232 4789999999999988
Q ss_pred CCcCh
Q 028817 155 KGLYF 159 (203)
Q Consensus 155 dP~yY 159 (203)
+..+|
T Consensus 70 ~~~RF 74 (106)
T 2r4q_A 70 EMERF 74 (106)
T ss_dssp CCGGG
T ss_pred CHhHc
Confidence 88888
No 124
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=53.55 E-value=37 Score=27.12 Aligned_cols=79 Identities=9% Similarity=0.094 Sum_probs=47.9
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHC--CCeEEEeecC------CC----------------------
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESA--GARVIPLIYN------EP---------------------- 132 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~A--GA~PV~LP~~------~~---------------------- 132 (203)
..|+.|.++++.+. ......+.+.+++.++++ |+.+..+-.. .+
T Consensus 5 ~kiLiI~gSpr~~~------~S~s~~l~~~~~~~~~~~~~g~ev~~~dL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (211)
T 3p0r_A 5 TKVLFVKANNRPAE------QAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFDLTEEEAK 78 (211)
T ss_dssp CEEEEEECCCSCTT------TCHHHHHHHHHHHHHHHHCTTSEEEEEEGGGSCCCCCCHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CEEEEEEeCCCCCC------CCHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHhhhccCccccCCHHHHh
Confidence 35778888887111 113345778888888876 7776554221 11
Q ss_pred ----HHHHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHH
Q 028817 133 ----EEILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIY 172 (203)
Q Consensus 133 ----~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~ 172 (203)
.+.+.+.+...|+|+| ..|.|+...--.+|-.+++
T Consensus 79 ~~~~~~~~~~~~~~aD~iv~-----~~P~y~~~~p~~lK~~iD~ 117 (211)
T 3p0r_A 79 AVAVADKYLNQFLEADKVVF-----GFPLWNLTIPAVLHTYIDY 117 (211)
T ss_dssp HHHHHHHHHHHHHHCSEEEE-----EEECBTTBCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCEEEE-----EcChhcccCCHHHHHHHHH
Confidence 1234456888999999 5688886544444444443
No 125
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=53.39 E-value=37 Score=27.25 Aligned_cols=62 Identities=13% Similarity=-0.002 Sum_probs=36.8
Q ss_pred CCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecC--CCHHH----HHHHH-HhcCEEEeCCC
Q 028817 82 NRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYN--EPEEI----LFEKL-KLVNGVLLTGG 151 (203)
Q Consensus 82 ~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~--~~~e~----l~~~L-d~VDGVLLTGG 151 (203)
.+-.||+....... ..+..+.+..-++.++.|...++.... .+.+. ++.++ ..+|||++.+.
T Consensus 2 ~~~~Igvi~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 70 (297)
T 3rot_A 2 VRDKYYLITHGSQD--------PYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIP 70 (297)
T ss_dssp -CCEEEEECSCCCS--------HHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCC
T ss_pred ceEEEEEEecCCCC--------chHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 35689988764321 123334555556677789888877654 24332 33322 46999999764
No 126
>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}
Probab=52.83 E-value=2.1 Score=35.80 Aligned_cols=44 Identities=18% Similarity=0.146 Sum_probs=27.1
Q ss_pred HHhcCEEEeCCCC-CCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 140 LKLVNGVLLTGGW-AKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 140 Ld~VDGVLLTGG~-DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
.+..|.|+++||. ... .......+.+.. +..++..+|.+||.|.
T Consensus 78 ~~~~D~liVPGG~~g~~--~l~~~~~l~~~L--~~~~~~~~IaaIC~G~ 122 (236)
T 3bhn_A 78 VKEQDVVLITSGYRGIP--AALQDENFMSAL--KLDPSRQLIGSICAGS 122 (236)
T ss_dssp GGGCSEEEECCCTTHHH--HHHTCHHHHHHC--CCCTTTCEEEEETTHH
T ss_pred ccCCCEEEEcCCccCHh--hhccCHHHHHHH--HhCCCCCEEEEEcHHH
Confidence 5778999999994 211 111223344444 4444444999999986
No 127
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=52.68 E-value=36 Score=27.02 Aligned_cols=62 Identities=13% Similarity=-0.101 Sum_probs=37.5
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCC--CHHH----HHHHH-HhcCEEEeCCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNE--PEEI----LFEKL-KLVNGVLLTGGW 152 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~--~~e~----l~~~L-d~VDGVLLTGG~ 152 (203)
...||+....... ..+..+.+..-++.++.|...+++.... +.+. ++.++ ..+|||++.+..
T Consensus 5 ~~~Igvi~~~~~~--------~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~ 73 (304)
T 3o1i_D 5 DEKICAIYPHLKD--------SYWLSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVD 73 (304)
T ss_dssp CCEEEEEESCSCS--------HHHHHHHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSS
T ss_pred CcEEEEEeCCCCC--------cHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 4578887653321 1233344555566777899988888764 4332 22222 479999998653
No 128
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=52.64 E-value=12 Score=28.09 Aligned_cols=63 Identities=16% Similarity=0.172 Sum_probs=39.5
Q ss_pred hHHHHHHHHHCCCeEEEeecCCCHHHHHHHHH--hcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEee
Q 028817 110 AASYVKFVESAGARVIPLIYNEPEEILFEKLK--LVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGIT 184 (203)
Q Consensus 110 ~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld--~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic 184 (203)
...|++.+....+..++++-+.. +.....++ .+-+|+||||..+++. +.++|.+.+ .||+.+=
T Consensus 41 ~~~~~~~~~~~~~~l~I~~G~r~-~~~l~a~~~~~~~~iIlt~g~~~~~~-------i~~~A~~~~----ipvl~t~ 105 (139)
T 2ioj_A 41 PQSALRYLREARNAALVTGGDRS-DLLLTALEMPNVRCLILTGNLEPVQL-------VLTKAEERG----VPVILTG 105 (139)
T ss_dssp HHHHHHHHHTCSSEEEEEETTCH-HHHHHHTTCTTEEEEEEETTCCCCHH-------HHHHHHHHT----CCEEECS
T ss_pred HHHHHHHHhcCCCEEEEEcCCHH-HHHHHHHhCCCCcEEEEcCCCCCCHH-------HHHHHHHCC----CeEEEEC
Confidence 45677777765457788876543 33334444 6779999999886543 335555433 5777543
No 129
>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycoly mutant, permutation, permuted sequence, protein foldin domain protein; 2.30A {Saccharomyces cerevisiae} SCOP: c.86.1.1
Probab=52.32 E-value=23 Score=32.67 Aligned_cols=79 Identities=19% Similarity=0.214 Sum_probs=53.8
Q ss_pred HHHHHHHCCCeEEEeecC-----CCHHHHHHHHHhcCEEEeCCC----------CC-CCCcCh-----HHHHHHHHHHHH
Q 028817 113 YVKFVESAGARVIPLIYN-----EPEEILFEKLKLVNGVLLTGG----------WA-KKGLYF-----QIVEKIFKHEAI 171 (203)
Q Consensus 113 YVkaVe~AGA~PV~LP~~-----~~~e~l~~~Ld~VDGVLLTGG----------~D-VdP~yY-----~~~~~I~~~AL~ 171 (203)
|+..+...-.+|++.-.. .-...++.+++.+|.|++.|| .+ |.-+++ +.++.|+++|.+
T Consensus 123 ~l~kal~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~TFl~A~G~~~IG~SL~E~d~~~~a~~ll~kak~ 202 (416)
T 1fw8_A 123 YFGKALENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAEIVPKLMEKAKA 202 (416)
T ss_dssp HHHHHHHSCCSSEEEEEECSCSTTTHHHHHHHHTTCSEEEEEGGGHHHHHHHHSCCCCCSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCeEEEEcCcchhhHHHHHHHHHHhhCeeEeChHHHHHHHHHcCCCccCccccChhhHHHHHHHHHHHHh
Confidence 333344456888765542 245788999999999999997 24 444444 568899999866
Q ss_pred HHhCCCCcceEeeCCccccc
Q 028817 172 YERKKQSLVHGITGDVVQKD 191 (203)
Q Consensus 172 ~n~~g~~PV~Gic~~~~~~~ 191 (203)
++.+=-.||=-+|....-.|
T Consensus 203 ~g~~i~lPvD~vva~~f~~~ 222 (416)
T 1fw8_A 203 KGVEVVLPVDFIIADAFSAD 222 (416)
T ss_dssp HTCEEECCSEEEEESSSSTT
T ss_pred cCCEEECCceEEEeeccCCC
Confidence 65443339988888755444
No 130
>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}
Probab=52.06 E-value=3.9 Score=34.44 Aligned_cols=43 Identities=9% Similarity=0.049 Sum_probs=25.9
Q ss_pred hcCEEEeCCCC-CCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 142 LVNGVLLTGGW-AKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 142 ~VDGVLLTGG~-DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
..|.|+++||. .. ........+.+...+... ..-+|.+||.|.
T Consensus 84 ~yD~liVPGG~~g~--~~l~~~~~l~~~Lr~~~~-~gk~IaaICtG~ 127 (253)
T 3ewn_A 84 DLTVLFAPGGTDGT--LAAASDAETLAFMADRGA-RAKYITSVCSGS 127 (253)
T ss_dssp SCSEEEECCBSHHH--HHHTTCHHHHHHHHHHHT-TCSEEEEETTHH
T ss_pred CCCEEEECCCccch--hhhccCHHHHHHHHHHHH-cCCEEEEEChHH
Confidence 45999999996 31 111122344444444443 335999999985
No 131
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=52.05 E-value=59 Score=26.63 Aligned_cols=64 Identities=9% Similarity=0.032 Sum_probs=37.3
Q ss_pred CCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHH----HHHH-HhcCEEEeCCC
Q 028817 82 NRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEIL----FEKL-KLVNGVLLTGG 151 (203)
Q Consensus 82 ~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l----~~~L-d~VDGVLLTGG 151 (203)
+..+||+...... .....+..+.+...+..++.|-..++.....+.+.- +.++ ..+|||++.+.
T Consensus 60 ~~~~Igvi~~~~~------~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 128 (338)
T 3dbi_A 60 STQTLGLVVTNTL------YHGIYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPR 128 (338)
T ss_dssp CCSEEEEEECTTT------TSTTHHHHHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCCEEEEEecCCc------ccChhHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 3468998765410 001122334455555677889988888765554432 2222 36999999875
No 132
>1v6s_A Phosphoglycerate kinase; riken structu genomics/proteomics initiative, RSGI, structural genomics, transferase; 1.50A {Thermus thermophilus} SCOP: c.86.1.1 PDB: 2ie8_A
Probab=51.67 E-value=20 Score=32.93 Aligned_cols=82 Identities=6% Similarity=0.140 Sum_probs=57.4
Q ss_pred hhhHHHHHHHHHC---CCeEEEeecC-----CCHHHHHHHHHhcCEEEeCCCC----------C-----CCCcChHHHHH
Q 028817 108 YIAASYVKFVESA---GARVIPLIYN-----EPEEILFEKLKLVNGVLLTGGW----------A-----KKGLYFQIVEK 164 (203)
Q Consensus 108 yI~~sYVkaVe~A---GA~PV~LP~~-----~~~e~l~~~Ld~VDGVLLTGG~----------D-----VdP~yY~~~~~ 164 (203)
++.+.=++++.++ -.+|++.-.. .-...++.+++++|.|++.||- + ++....+.++.
T Consensus 166 ~Lm~kEl~~l~k~l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~Sl~E~d~~~~a~~ 245 (390)
T 1v6s_A 166 FLMEKEVRALSRLLKDPERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDRLDLAKD 245 (390)
T ss_dssp HHHHHHHHHHHTTTSSCCSSEEEEECCSCGGGTHHHHHHHGGGCSEEEECSTTHHHHHHHTTCBCTTCCCCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEcCCchhhHHHHHHHHHHHhccceeCcHHHHHHHHHcCCCCCccccchhhHHHHHH
Confidence 3445556666553 4688665543 2356889999999999999982 2 45666688999
Q ss_pred HHHHHHHHHhCCCCcceEeeCCccc
Q 028817 165 IFKHEAIYERKKQSLVHGITGDVVQ 189 (203)
Q Consensus 165 I~~~AL~~n~~g~~PV~Gic~~~~~ 189 (203)
|+++|.+++.+=-.||=-+|....-
T Consensus 246 ll~~a~~~g~~i~lPvD~vva~~f~ 270 (390)
T 1v6s_A 246 LLGRAEALGVRVYLPEDVVAAERIE 270 (390)
T ss_dssp HHHHHHHHTCEEECCSEEEEESSCC
T ss_pred HHHHHHHcCCEEECCcChhhhhccC
Confidence 9999977665433399888887543
No 133
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=51.20 E-value=61 Score=26.67 Aligned_cols=62 Identities=10% Similarity=0.013 Sum_probs=36.4
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHH-----hcCEEEeCCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKLK-----LVNGVLLTGGW 152 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld-----~VDGVLLTGG~ 152 (203)
...||+....... ..+..+.+..-+.+++.|-..++.....+.+.-.++++ .+|||++.+..
T Consensus 68 ~~~Ig~i~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~ 134 (344)
T 3kjx_A 68 VNLVAVIIPSLSN--------MVFPEVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLE 134 (344)
T ss_dssp CSEEEEEESCSSS--------SSHHHHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CCEEEEEeCCCCc--------HHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 4589987653221 12233444444456667888877776555544344433 58999998643
No 134
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=50.67 E-value=56 Score=25.66 Aligned_cols=62 Identities=11% Similarity=0.130 Sum_probs=35.9
Q ss_pred CCEEEEcCCC--CCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHH----HHHHHH-HhcCEEEeCCCC
Q 028817 83 RPVIGILSHP--GDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEE----ILFEKL-KLVNGVLLTGGW 152 (203)
Q Consensus 83 rPVIGIta~~--~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e----~l~~~L-d~VDGVLLTGG~ 152 (203)
..+||+.... ... .....+.+...+++++.|...++.....+.+ .++.++ ..+|||++.+..
T Consensus 19 ~~~Ig~i~~~~~~~~--------~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 87 (296)
T 3brq_A 19 TQTLGLVVTNTLYHG--------IYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRF 87 (296)
T ss_dssp CCEEEEEECGGGCC----------CHHHHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred CceEEEEeCCcccCC--------chHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 4589987653 211 1223344444456677898887776544433 233333 469999998753
No 135
>3cwc_A Putative glycerate kinase 2; structural genomics, center for structural genomics of infec diseases, csgid, IDP122, transferase; 2.23A {Salmonella typhimurium LT2}
Probab=49.74 E-value=12 Score=34.23 Aligned_cols=48 Identities=21% Similarity=0.263 Sum_probs=31.5
Q ss_pred HHHHHHHhcCEEEeCC-CCCCCCcCh-HHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 135 ILFEKLKLVNGVLLTG-GWAKKGLYF-QIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 135 ~l~~~Ld~VDGVLLTG-G~DVdP~yY-~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
.+++.++..| |++|| |.-..-..+ ++.--+-+.|.+.+ .||.+|||.+
T Consensus 280 ~l~~~l~~AD-LVITGEG~~D~Qtl~GK~p~gVa~~A~~~~----vPviaiaG~~ 329 (383)
T 3cwc_A 280 HLEACLADAD-LVITGEGRIDSQTIHGKVPIGVANIAKRYN----KPVIGIAGSL 329 (383)
T ss_dssp THHHHHHHCS-EEEECCEESCC----CHHHHHHHHHHHHTT----CCEEEEEEEC
T ss_pred ChHhhhcCCC-EEEECCCCCcCcCCCCcHHHHHHHHHHHhC----CCEEEEeCCC
Confidence 5678899999 77888 442333444 44556666666654 7999999965
No 136
>3q3v_A Phosphoglycerate kinase; structural genomics, center for structural genomics of infec diseases, csgid, PGK; HET: PGE; 2.15A {Campylobacter jejuni subsp} SCOP: c.86.1.0
Probab=49.71 E-value=27 Score=32.12 Aligned_cols=80 Identities=15% Similarity=0.152 Sum_probs=54.5
Q ss_pred hhHHHHHHHHH---CCCeEEEeecCCC-----HHHHHHHHHhcCEEEeCCCC----------C-----CCCcChHHHHHH
Q 028817 109 IAASYVKFVES---AGARVIPLIYNEP-----EEILFEKLKLVNGVLLTGGW----------A-----KKGLYFQIVEKI 165 (203)
Q Consensus 109 I~~sYVkaVe~---AGA~PV~LP~~~~-----~e~l~~~Ld~VDGVLLTGG~----------D-----VdP~yY~~~~~I 165 (203)
+.+.=++++.+ .-.+|++.-.... ...++.+++.+|.|++.||- + ++....+.++.|
T Consensus 177 Lm~kEl~~l~k~l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~Sl~e~d~~~~a~~l 256 (403)
T 3q3v_A 177 LLQKEIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDKLIIGGGMAFTFLKALGYDIGNSLLEEELLEEANKI 256 (403)
T ss_dssp HHHHHHHHHHHHTTCCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECSTTHHHHHHHTTCCCTTSCCCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCceEEEEeCccHHHHHHHHHHHHHhcCEEEECcHHHHHHHHHcCCCcCccccchhhHHHHHHH
Confidence 44555555554 3467766655432 34688899999999999982 2 355666789999
Q ss_pred HHHHHHHHhCCCCcceEeeCCcc
Q 028817 166 FKHEAIYERKKQSLVHGITGDVV 188 (203)
Q Consensus 166 ~~~AL~~n~~g~~PV~Gic~~~~ 188 (203)
+++|.+++.+=-.||=.+|....
T Consensus 257 l~~a~~~g~~i~LPvD~vva~~f 279 (403)
T 3q3v_A 257 LTKGKNLGVKIYLPVDVVAAPAC 279 (403)
T ss_dssp HHHHHHTTCEEECCSEEEEESSS
T ss_pred HHHHHHcCCEEECCceEEEeecc
Confidence 99988765443339988887543
No 137
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=49.65 E-value=58 Score=24.42 Aligned_cols=80 Identities=10% Similarity=0.146 Sum_probs=47.4
Q ss_pred hhhhHHHHHH-HHHCCCeEEEeecCCCHHHHHHHH--HhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEe
Q 028817 107 SYIAASYVKF-VESAGARVIPLIYNEPEEILFEKL--KLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGI 183 (203)
Q Consensus 107 syI~~sYVka-Ve~AGA~PV~LP~~~~~e~l~~~L--d~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gi 183 (203)
+-+...++.. ++.+|..++-+-...+.+++.+.. ...|-|.++.-.. .+....+.+.+...++. .++.+| +
T Consensus 16 HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~~~d~v~lS~~~~---~~~~~~~~~i~~l~~~g-~~~i~v--~ 89 (137)
T 1ccw_A 16 HAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILVSSLYG---QGEIDCKGLRQKCDEAG-LEGILL--Y 89 (137)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEEEECSS---THHHHHTTHHHHHHHTT-CTTCEE--E
T ss_pred hHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEecCc---CcHHHHHHHHHHHHhcC-CCCCEE--E
Confidence 4577778875 577999999786666666665544 4678888876542 23334445544444332 123344 6
Q ss_pred eCCcc---cccc
Q 028817 184 TGDVV---QKDY 192 (203)
Q Consensus 184 c~~~~---~~~~ 192 (203)
+||.. .+||
T Consensus 90 vGG~~~~~~~~~ 101 (137)
T 1ccw_A 90 VGGNIVVGKQHW 101 (137)
T ss_dssp EEESCSSSSCCH
T ss_pred EECCCcCchHhh
Confidence 77753 4554
No 138
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=49.03 E-value=42 Score=26.68 Aligned_cols=43 Identities=9% Similarity=0.056 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHCCCeEEEeecCCCHHH----HHHHH-HhcCEEEeCCC
Q 028817 109 IAASYVKFVESAGARVIPLIYNEPEEI----LFEKL-KLVNGVLLTGG 151 (203)
Q Consensus 109 I~~sYVkaVe~AGA~PV~LP~~~~~e~----l~~~L-d~VDGVLLTGG 151 (203)
+.+..-+++++.|-..++.....+.+. ++.++ .++|||++.+.
T Consensus 19 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (283)
T 2ioy_A 19 LKNGAEEKAKELGYKIIVEDSQNDSSKELSNVEDLIQQKVDVLLINPV 66 (283)
T ss_dssp HHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred HHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 344444556777888877765444332 33333 35999999753
No 139
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=48.60 E-value=18 Score=27.76 Aligned_cols=91 Identities=15% Similarity=0.126 Sum_probs=49.8
Q ss_pred CCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCC-HH---------------HHHHHHHhcCE
Q 028817 82 NRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEP-EE---------------ILFEKLKLVNG 145 (203)
Q Consensus 82 ~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~-~e---------------~l~~~Ld~VDG 145 (203)
++.|+.|..+. .+ +...+.+...+.+++.|..+-++..... .. ...+.+...|+
T Consensus 5 M~kilii~~S~-~g---------~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ 74 (200)
T 2a5l_A 5 SPYILVLYYSR-HG---------ATAEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAG 74 (200)
T ss_dssp CCEEEEEECCS-SS---------HHHHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHHTCSE
T ss_pred cceEEEEEeCC-CC---------hHHHHHHHHHHHHhhCCCEEEEEEhhhccchhhhhccccccccCchhhHHHHHHCCE
Confidence 33466666654 21 3446677777788888887766654321 00 11456788999
Q ss_pred EEeCCCCCCCCcCh----HHHHHHHHHHHHH----HhCCCC-cceEeeCCc
Q 028817 146 VLLTGGWAKKGLYF----QIVEKIFKHEAIY----ERKKQS-LVHGITGDV 187 (203)
Q Consensus 146 VLLTGG~DVdP~yY----~~~~~I~~~AL~~----n~~g~~-PV~Gic~~~ 187 (203)
|+|-- |.|+ ...+.++++.... .-+|.. =++++||+.
T Consensus 75 ii~gs-----P~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~ 120 (200)
T 2a5l_A 75 LALGS-----PTRFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASL 120 (200)
T ss_dssp EEEEE-----ECBTTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEEEBSCS
T ss_pred EEEEc-----ChhccCccHHHHHHHHHHHHHhhccccCCCEEEEEEecCCC
Confidence 99843 4444 3445555554332 123333 456677753
No 140
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=48.42 E-value=34 Score=28.00 Aligned_cols=75 Identities=11% Similarity=0.030 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHCCCeEEEee-cCCCHHHHHHHHHhcCEEE----eCC--CCCCCCcChHHHHHHHHHHHHHHhCCCCcce
Q 028817 109 IAASYVKFVESAGARVIPLI-YNEPEEILFEKLKLVNGVL----LTG--GWAKKGLYFQIVEKIFKHEAIYERKKQSLVH 181 (203)
Q Consensus 109 I~~sYVkaVe~AGA~PV~LP-~~~~~e~l~~~Ld~VDGVL----LTG--G~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~ 181 (203)
.....++.+.+.|..+.+.- ...+.+.++++++.+|-|+ .+| |+...|.-.+..+.+-++..+.+ -+.||.
T Consensus 100 ~~~~~~~~i~~~g~~~gv~~~p~t~~e~~~~~~~~~D~v~~msv~pg~ggq~~~~~~~~~i~~lr~~~~~~~--~~~~I~ 177 (230)
T 1tqj_A 100 HLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERG--LDPWIE 177 (230)
T ss_dssp THHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGGCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHT--CCCEEE
T ss_pred hHHHHHHHHHHcCCcEEEEEeCCCcHHHHHHHHhcCCEEEEEEeccccCCccCcHHHHHHHHHHHHHHHhcC--CCCcEE
Confidence 35677888888998875544 2345677888899999663 344 44555555555555544433221 234776
Q ss_pred EeeC
Q 028817 182 GITG 185 (203)
Q Consensus 182 Gic~ 185 (203)
.+-|
T Consensus 178 v~GG 181 (230)
T 1tqj_A 178 VDGG 181 (230)
T ss_dssp EESS
T ss_pred EECC
Confidence 6544
No 141
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=48.15 E-value=52 Score=26.15 Aligned_cols=61 Identities=15% Similarity=0.101 Sum_probs=35.3
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHH----HHHHH-HhcCEEEeCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEI----LFEKL-KLVNGVLLTGG 151 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~----l~~~L-d~VDGVLLTGG 151 (203)
..+||+....... ..+..+.+..-+++++.|-..++.....+.+. ++.++ ..+|||++.+.
T Consensus 8 ~~~Igvi~~~~~~--------~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 73 (285)
T 3c3k_A 8 TGMLLVMVSNIAN--------PFCAAVVKGIEKTAEKNGYRILLCNTESDLARSRSCLTLLSGKMVDGVITMDA 73 (285)
T ss_dssp CCEEEEEESCTTS--------HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHHTTCCSEEEECCC
T ss_pred CCEEEEEeCCCCC--------chHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 4579987653211 11223344444566778988887765544432 23333 45999999865
No 142
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=47.96 E-value=16 Score=28.53 Aligned_cols=78 Identities=14% Similarity=0.067 Sum_probs=45.9
Q ss_pred CchhhhHHHHHHHHHCCCeEEEeecCCC---------------------H-HHHHHHHHhcCEEEeCCCCCCCCcChH--
Q 028817 105 NASYIAASYVKFVESAGARVIPLIYNEP---------------------E-EILFEKLKLVNGVLLTGGWAKKGLYFQ-- 160 (203)
Q Consensus 105 ~~syI~~sYVkaVe~AGA~PV~LP~~~~---------------------~-e~l~~~Ld~VDGVLLTGG~DVdP~yY~-- 160 (203)
+...+.+...+.+++.|+.+-++..... . ..+.+.+...|+|+|- .|.|+.
T Consensus 19 ~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ii~g-----sP~y~~~~ 93 (211)
T 1ydg_A 19 TGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFS-----SPTRFGGA 93 (211)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSEEEEE-----EEEETTEE
T ss_pred hHHHHHHHHHHHHhcCCCEEEEEeccccccchhhhcccccccccccccchhHHHHHHHHHCCEEEEE-----cCccccCc
Confidence 3456777788888888987766665431 0 2244568889999994 466664
Q ss_pred --HHHHHHHHHHHHH----hCCCC-cceEeeCCc
Q 028817 161 --IVEKIFKHEAIYE----RKKQS-LVHGITGDV 187 (203)
Q Consensus 161 --~~~~I~~~AL~~n----~~g~~-PV~Gic~~~ 187 (203)
..+.++++..... -+|.. =+++.+|+.
T Consensus 94 ~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~ 127 (211)
T 1ydg_A 94 TSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNV 127 (211)
T ss_dssp CHHHHHHHHTTHHHHHTTTTTTCEEEEEEEESST
T ss_pred cHHHHHHHHHhccccccccCCCCEEEEEEeCCCC
Confidence 3455555443221 12222 356667664
No 143
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=47.87 E-value=32 Score=28.35 Aligned_cols=42 Identities=14% Similarity=0.076 Sum_probs=30.9
Q ss_pred hHHHHHHHHHCCCeEEEeecCC-----CHHHHHHHH---HhcCEEEeCCC
Q 028817 110 AASYVKFVESAGARVIPLIYNE-----PEEILFEKL---KLVNGVLLTGG 151 (203)
Q Consensus 110 ~~sYVkaVe~AGA~PV~LP~~~-----~~e~l~~~L---d~VDGVLLTGG 151 (203)
...+.+.+++.|+.++.+|... +.+.+++.+ +..|.|+||=.
T Consensus 26 a~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~ 75 (269)
T 3re1_A 26 SAALARVLADAGIFSSSLPLLETEPLPLTPAQRSIIFELLNYSAVIVVSK 75 (269)
T ss_dssp HHHHHHHHHTTTCEEEECCCCEEEECCCHHHHHHHHHTGGGSSEEEECSH
T ss_pred HHHHHHHHHHCCCCEEEcCCEEEecCCCcHHHHHHHHhccCCCEEEEECH
Confidence 4667888999999999999753 233454443 56799999965
No 144
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=47.46 E-value=61 Score=26.70 Aligned_cols=82 Identities=12% Similarity=0.064 Sum_probs=54.3
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecC--CCHHHHHHHHHhcCEEEeCCCCCCCCcChH
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYN--EPEEILFEKLKLVNGVLLTGGWAKKGLYFQ 160 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~--~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~ 160 (203)
+.|..|.+++..... .+.....+.+.+++.+++.|..+-.+-.. .+.+...+.+...|+|+|. .|.|+.
T Consensus 26 ~kiLiI~gsp~~~~s----~~s~n~~L~~~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l~~aD~iv~~-----~P~y~~ 96 (218)
T 3rpe_A 26 SNVLIINAMKEFAHS----KGALNLTLTNVAADFLRESGHQVKITTVDQGYDIESEIENYLWADTIIYQ-----MPAWWM 96 (218)
T ss_dssp CCEEEEECCCCBTTB----CSHHHHHHHHHHHHHHHHTTCCEEEEEGGGCCCHHHHHHHHHHCSEEEEE-----EECBTT
T ss_pred cceEEEEeCCCcccC----CChHHHHHHHHHHHHHhhCCCEEEEEECCCccCHHHHHHHHHhCCEEEEE-----CChHhc
Confidence 457788888853110 01122345667777788888877666554 3556677899999999994 577774
Q ss_pred ----HHHHHHHHHHHHH
Q 028817 161 ----IVEKIFKHEAIYE 173 (203)
Q Consensus 161 ----~~~~I~~~AL~~n 173 (203)
..|..+++++...
T Consensus 97 ~~p~~lK~~iD~v~~~g 113 (218)
T 3rpe_A 97 GEPWILKKYIDEVFTDG 113 (218)
T ss_dssp BCCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHhcC
Confidence 4677777777763
No 145
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=47.26 E-value=50 Score=26.29 Aligned_cols=66 Identities=17% Similarity=0.071 Sum_probs=36.4
Q ss_pred CCCEEEEcCCC-CCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCC----HHHHHHHH-HhcCEEEeCCCC
Q 028817 82 NRPVIGILSHP-GDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEP----EEILFEKL-KLVNGVLLTGGW 152 (203)
Q Consensus 82 ~rPVIGIta~~-~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~----~e~l~~~L-d~VDGVLLTGG~ 152 (203)
+..+||+.... ..+. ....+.-+.+..-+++++.|-..++.....+ .+.++.++ ..+|||++.+..
T Consensus 3 ~s~~Ig~i~~~~~~~~-----~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 74 (287)
T 3bbl_A 3 LSFMIGYSWTQTEPGQ-----VNHILDQFLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSGNVDGFVLSSIN 74 (287)
T ss_dssp CCCEEEECCCCCCTTC-----SCCTHHHHHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTTCCSEEEECSCC
T ss_pred ceeEEEEEeccccccc-----CChhHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHcCCCCEEEEeecC
Confidence 34589988654 2100 0112233444444566778988777654332 23344444 469999998753
No 146
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=46.20 E-value=48 Score=27.57 Aligned_cols=62 Identities=13% Similarity=0.072 Sum_probs=36.1
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHH-----HhcCEEEeCCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKL-----KLVNGVLLTGGW 152 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~L-----d~VDGVLLTGG~ 152 (203)
..+||+....... ..+..+.+..-+.+++.|-..++.....+.+.-.+++ ..+|||++.+..
T Consensus 70 ~~~Igvi~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~ 136 (355)
T 3e3m_A 70 SGFVGLLLPSLNN--------LHFAQTAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLRRRPEAMVLSYDG 136 (355)
T ss_dssp -CEEEEEESCSBC--------HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred CCEEEEEeCCCCc--------hHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 3579987653221 1122233444445677898888877655554333333 379999998753
No 147
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}
Probab=45.97 E-value=1.2e+02 Score=24.57 Aligned_cols=45 Identities=20% Similarity=0.242 Sum_probs=33.0
Q ss_pred hhhHHHHHHHHHCCCeEEEeec--------------C-CCHHHHHHHHH-------hcCEEEeCCCC
Q 028817 108 YIAASYVKFVESAGARVIPLIY--------------N-EPEEILFEKLK-------LVNGVLLTGGW 152 (203)
Q Consensus 108 yI~~sYVkaVe~AGA~PV~LP~--------------~-~~~e~l~~~Ld-------~VDGVLLTGG~ 152 (203)
.|.+..++.+.+.|+.++++-- + .+.+.+++.++ .+|.|+-.-|.
T Consensus 25 GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nAg~ 91 (269)
T 3vtz_A 25 GIGLAVVDALVRYGAKVVSVSLDEKSDVNVSDHFKIDVTNEEEVKEAVEKTTKKYGRIDILVNNAGI 91 (269)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESCC--CTTSSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCchhccCceeEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 5888888999999999877532 1 24456666665 78999988775
No 148
>1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A {Saccharomyces cerevisiae} SCOP: c.86.1.1 PDB: 3pgk_A*
Probab=45.53 E-value=23 Score=32.75 Aligned_cols=83 Identities=17% Similarity=0.183 Sum_probs=55.1
Q ss_pred hhHHHHHHHH---HCCCeEEEeecCC-----CHHHHHHHHHhcCEEEeCCC----------CC-CCCcC-----hHHHHH
Q 028817 109 IAASYVKFVE---SAGARVIPLIYNE-----PEEILFEKLKLVNGVLLTGG----------WA-KKGLY-----FQIVEK 164 (203)
Q Consensus 109 I~~sYVkaVe---~AGA~PV~LP~~~-----~~e~l~~~Ld~VDGVLLTGG----------~D-VdP~y-----Y~~~~~ 164 (203)
+.+.=++++. ..-.+|++.-... -...++.+++.+|.|++.|| .+ |.-++ .+.++.
T Consensus 186 Lm~kEl~~l~kal~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~TFl~A~G~~~iG~Sl~E~d~~~~a~~ 265 (415)
T 1qpg_A 186 LLEKELKYFGKALENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAEIVPK 265 (415)
T ss_dssp HHHHHHHHHHHHHSSCCSSEEEEECSSCSGGGHHHHHHHTTTCSEEEECGGGHHHHHHHHSCCCCCSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCeEEEEcCcchhhHHHHHHHHHHhcCEEEeChHHHHHHHHHcCCCcccchhcChhhHHHHHH
Confidence 3344444443 3567887655532 34688999999999999998 24 43334 467889
Q ss_pred HHHHHHHHHhCCCCcceEeeCCccccc
Q 028817 165 IFKHEAIYERKKQSLVHGITGDVVQKD 191 (203)
Q Consensus 165 I~~~AL~~n~~g~~PV~Gic~~~~~~~ 191 (203)
|+++|.+++.+=-.||=-+|....-.|
T Consensus 266 ll~ka~~~g~~i~lPvD~vva~~f~~~ 292 (415)
T 1qpg_A 266 LMEKAKAKGVEVVLPVDFIIADAFSAD 292 (415)
T ss_dssp HHHHHHHHTCEEECCSEEEEESSSSSS
T ss_pred HHHHHHHcCCEEECCcchhhhhccCCC
Confidence 999997766443339988888755433
No 149
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=45.49 E-value=80 Score=25.32 Aligned_cols=38 Identities=21% Similarity=0.263 Sum_probs=27.2
Q ss_pred HHHHHHHHHCCCeEEEee-cCCCHHHHHHHHH---hcCEEEe
Q 028817 111 ASYVKFVESAGARVIPLI-YNEPEEILFEKLK---LVNGVLL 148 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP-~~~~~e~l~~~Ld---~VDGVLL 148 (203)
...++.+.+.|..+.+.- ...+.+.++++++ .+|-|++
T Consensus 103 ~~~~~~i~~~g~~igv~~~p~t~~e~~~~~~~~~~~~d~vl~ 144 (228)
T 1h1y_A 103 QELIQSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLV 144 (228)
T ss_dssp HHHHHHHHHTTCEEEEEECTTSCGGGGHHHHHSSSCCSEEEE
T ss_pred HHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEE
Confidence 566788888887665433 2335567888999 8999988
No 150
>3oz7_A Phosphoglycerate kinase; transferase, ATP binding, glycolysi malaria parasite; 2.70A {Plasmodium falciparum} SCOP: c.86.1.1 PDB: 1ltk_A* 3oza_A
Probab=44.98 E-value=53 Score=30.33 Aligned_cols=81 Identities=14% Similarity=0.145 Sum_probs=55.9
Q ss_pred hhhHHHHHHHHH---CCCeEEEeecC-----CCHHHHHHHHHhcCEEEeCCC-------C----C-----CCCcChHHHH
Q 028817 108 YIAASYVKFVES---AGARVIPLIYN-----EPEEILFEKLKLVNGVLLTGG-------W----A-----KKGLYFQIVE 163 (203)
Q Consensus 108 yI~~sYVkaVe~---AGA~PV~LP~~-----~~~e~l~~~Ld~VDGVLLTGG-------~----D-----VdP~yY~~~~ 163 (203)
++.+.=++++.+ .-.+|++.-.. .-...++.+++.+|.|++.|| + + ++....+.++
T Consensus 189 ~LmekEl~~l~kal~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~~G~~iG~Sl~e~d~~~~a~ 268 (417)
T 3oz7_A 189 FLMKKELEYFSKALENPQRPLLAILGGAKVSDKIQLIKNLLDKVDRMIIGGGMAYTFKKVLNNMKIGTSLFDEAGSKIVG 268 (417)
T ss_dssp HHHHHHHHHHHHHHTSCCSSEEEEEECSCSTTSHHHHHHHHTTCSEEEEETTHHHHHHHHHHCCCBTTSCCCTTTHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCceEEEEeCccHHHHHHHHHHHHHhcCEEEeccHHHHHHHHHHcCCccCchhcCccChHHHH
Confidence 345555555543 45777666542 245688999999999999998 1 2 4666678899
Q ss_pred HHHHHHHHHHhCCCCcceEeeCCcc
Q 028817 164 KIFKHEAIYERKKQSLVHGITGDVV 188 (203)
Q Consensus 164 ~I~~~AL~~n~~g~~PV~Gic~~~~ 188 (203)
.|+++|.+++.+=-.||=-+|....
T Consensus 269 ~il~~a~~~g~~i~LPvD~vva~~f 293 (417)
T 3oz7_A 269 EIMEKAKAKNVQIFLPVDFKIADNF 293 (417)
T ss_dssp HHHHHHHHTTCEEECCSEEEEESSS
T ss_pred HHHHHHHHcCCEEECCceeEEeecc
Confidence 9999988766443339878887643
No 151
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=44.70 E-value=30 Score=27.69 Aligned_cols=79 Identities=15% Similarity=0.103 Sum_probs=48.3
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHH----HHHHC--CCeEEEeecC----------------CCHHHHHH
Q 028817 81 NNRPVIGILSHPGDGASGRLNNSKNASYIAASYVK----FVESA--GARVIPLIYN----------------EPEEILFE 138 (203)
Q Consensus 81 ~~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVk----aVe~A--GA~PV~LP~~----------------~~~e~l~~ 138 (203)
.+|.|++|.++++... ....+.+.+++ .+++. |+.+-++-.. .+...+.+
T Consensus 10 ~~~~il~i~GS~r~~S--------~t~~La~~~~~~~~~~l~~~~~g~eve~idL~d~~l~~~~~~~~~~~~~~~~~~~~ 81 (191)
T 3k1y_A 10 HMRTLAVISAGLSTPS--------STRQIADSISEAVTAAVSARGEALSVSTIELSELIPDLMTAMTTRVHTTKLEEITS 81 (191)
T ss_dssp CSEEEEEEECCCSSSC--------HHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCHHHHTTTTSSSCCCHHHHHHHH
T ss_pred hhceEEEEECCCCCCC--------HHHHHHHHHHHHhHHHHHhcCCCceEEEEEHHhCCCcccChhhcCCCCHHHHHHHH
Confidence 4577999999987532 23345566666 44445 5555444321 01235677
Q ss_pred HHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHH
Q 028817 139 KLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIY 172 (203)
Q Consensus 139 ~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~ 172 (203)
.+...|||+| ..|.|+....-.+|-.+++
T Consensus 82 ~i~~AD~ivi-----~sP~Y~~~~~~~lK~~iD~ 110 (191)
T 3k1y_A 82 ALSASDGLVV-----ATPVFKASYTGLFKMFFDI 110 (191)
T ss_dssp HHHHCSEEEE-----EEECBTTBSCHHHHHHHHH
T ss_pred HHHHCCEEEE-----EcCccCCcCcHHHHHHHHH
Confidence 8889999998 5688886655555555554
No 152
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=44.67 E-value=37 Score=27.48 Aligned_cols=42 Identities=12% Similarity=0.018 Sum_probs=30.5
Q ss_pred hHHHHHHHHHCCCeEEEeecCC-----CHHHHHHHH---HhcCEEEeCCC
Q 028817 110 AASYVKFVESAGARVIPLIYNE-----PEEILFEKL---KLVNGVLLTGG 151 (203)
Q Consensus 110 ~~sYVkaVe~AGA~PV~LP~~~-----~~e~l~~~L---d~VDGVLLTGG 151 (203)
...+.+.+++.|+.++.+|... +.+.+++.+ +..|.|+||=.
T Consensus 18 ~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~ 67 (254)
T 4es6_A 18 CAALAASLGEAGVHSSSLPLLAIDPLEETPEQRTLMLDLDRYCAVVVVSK 67 (254)
T ss_dssp HHHHHHHHHHTTCEEEECCSCEEEECCCCHHHHHHHHTGGGCSEEEECSH
T ss_pred hHHHHHHHHHCCCcEEEeCCEEEeeCcChHHHHHHHHhccCCCEEEEECH
Confidence 3667888999999999998743 223444443 56799999965
No 153
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=44.67 E-value=78 Score=25.16 Aligned_cols=62 Identities=11% Similarity=0.173 Sum_probs=35.7
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHH----HHHHH-HhcCEEEeCCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEI----LFEKL-KLVNGVLLTGGW 152 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~----l~~~L-d~VDGVLLTGG~ 152 (203)
..+||+....... ..+..+.+..-+++++.|...++.....+.+. ++.++ ..+|||++.+..
T Consensus 20 ~~~Ig~i~~~~~~--------~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 86 (293)
T 2iks_A 20 TRSIGLVIPDLEN--------TSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAIIVSTSL 86 (293)
T ss_dssp CCEEEEEESCSCS--------HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred CcEEEEEeCCCcC--------cHHHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 4589987653211 11222334444456778988887765444332 33333 469999998754
No 154
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=44.60 E-value=25 Score=28.22 Aligned_cols=42 Identities=5% Similarity=0.011 Sum_probs=30.4
Q ss_pred HHHHHHHHHCCCeEEEeecCC-----CHHHHHHHHHhcCEEEeCCCC
Q 028817 111 ASYVKFVESAGARVIPLIYNE-----PEEILFEKLKLVNGVLLTGGW 152 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~-----~~e~l~~~Ld~VDGVLLTGG~ 152 (203)
..+.+.+++.|+.++.+|... +.+.+.+.++..|.|+||=..
T Consensus 14 ~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~l~~~d~viftS~~ 60 (240)
T 3mw8_A 14 AAMASALDALAIPYLVEPLLSVEAAAVTQAQLDELSRADILIFISTS 60 (240)
T ss_dssp HHHHHHHHHHTCCEEECCSCEEEECCCCHHHHHHHTTCSEEEECSHH
T ss_pred HHHHHHHHHCCCcEEEeCcEEEeccccHHHHHHHhcCCCEEEEECHH
Confidence 567788999999999998743 122233346789999999753
No 155
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=44.59 E-value=69 Score=25.55 Aligned_cols=61 Identities=20% Similarity=0.193 Sum_probs=35.4
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHH----HHHHH-HhcCEEEeCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEI----LFEKL-KLVNGVLLTGG 151 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~----l~~~L-d~VDGVLLTGG 151 (203)
.-+||+....... ..+..+.+..-+++++.|-..++.....+.+. ++.++ ..+|||++.+.
T Consensus 16 s~~Igvi~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 81 (289)
T 2fep_A 16 TTTVGVIIPDISS--------IFYSELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGG 81 (289)
T ss_dssp CCEEEEEESCTTS--------HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCeEEEEeCCCCC--------chHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecC
Confidence 3578987643211 11223344444566778988877765544432 33333 46999999875
No 156
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*
Probab=44.43 E-value=1.2e+02 Score=24.27 Aligned_cols=20 Identities=5% Similarity=0.001 Sum_probs=10.8
Q ss_pred hhhHHHHHHHHHCCCeEEEe
Q 028817 108 YIAASYVKFVESAGARVIPL 127 (203)
Q Consensus 108 yI~~sYVkaVe~AGA~PV~L 127 (203)
.|....++.+.+.|+.++++
T Consensus 15 gIG~aia~~l~~~G~~vv~~ 34 (258)
T 3oid_A 15 GVGKAAAIRLAENGYNIVIN 34 (258)
T ss_dssp HHHHHHHHHHHHTTCEEEEE
T ss_pred hHHHHHHHHHHHCCCEEEEE
Confidence 35555555555556555543
No 157
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=44.09 E-value=56 Score=25.76 Aligned_cols=62 Identities=21% Similarity=0.090 Sum_probs=34.9
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHH----HHHHH-HhcCEEEeCCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEI----LFEKL-KLVNGVLLTGGW 152 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~----l~~~L-d~VDGVLLTGG~ 152 (203)
..+||+....... ..+.-+.+..-+++++.|...++.....+.+. ++.++ ..+|||++.+..
T Consensus 7 ~~~Ig~i~~~~~~--------~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 73 (289)
T 1dbq_A 7 TKSIGLLATSSEA--------AYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSE 73 (289)
T ss_dssp -CEEEEEESCTTS--------HHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred CCEEEEEeCCCCC--------hHHHHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHhCCCCEEEEEecc
Confidence 3578987643211 11222334444456777988877765544433 33333 469999997754
No 158
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=43.65 E-value=81 Score=26.22 Aligned_cols=75 Identities=15% Similarity=0.055 Sum_probs=47.0
Q ss_pred CEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCC-------------------------------
Q 028817 84 PVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEP------------------------------- 132 (203)
Q Consensus 84 PVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~------------------------------- 132 (203)
.|..|.++++.. .....+.+.+++.+++.|..+..+-....
T Consensus 4 kiLiI~gSpr~~--------s~t~~la~~~~~~l~~~g~eV~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (273)
T 1d4a_A 4 RALIVLAHSERT--------SFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKLKDPANFQYPAESVLAY 75 (273)
T ss_dssp EEEEEECCSCTT--------SHHHHHHHHHHHHHHHTTCEEEEEETTTTTCCCCCCGGGBCSCCSSTTSCCHHHHHHHHH
T ss_pred EEEEEEeCCCCc--------cHHHHHHHHHHHHHHhCCCeEEEEEccccCCCCcCCHHHHHhhccCcccccchhhhhhhh
Confidence 477788887531 13345677888888888887766554211
Q ss_pred -----HHHHHH---HHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHH
Q 028817 133 -----EEILFE---KLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAI 171 (203)
Q Consensus 133 -----~e~l~~---~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~ 171 (203)
.+++.+ .|...|+||| ..|.|+...--++|..++
T Consensus 76 ~~~~~~dd~~~~~~~l~~AD~IV~-----~~P~y~~s~Pa~LK~~iD 117 (273)
T 1d4a_A 76 KEGHLSPDIVAEQKKLEAADLVIF-----QFPLQWFGVPAILKGWFE 117 (273)
T ss_dssp HHTCBCHHHHHHHHHHHHCSEEEE-----EEECBTTBCCHHHHHHHH
T ss_pred hcccCcHHHHHHHHHHHhCCEEEE-----ECchhhccCCHHHHHHHH
Confidence 023444 4888999999 468888654444444444
No 159
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=43.62 E-value=55 Score=26.11 Aligned_cols=62 Identities=11% Similarity=-0.016 Sum_probs=35.2
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHH-------HHHHHH-HhcCEEEeCCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEE-------ILFEKL-KLVNGVLLTGGW 152 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e-------~l~~~L-d~VDGVLLTGG~ 152 (203)
..+||+....... ..+..+.+..-+++++.|-..++.....+.+ .++.++ ..+|||++.+..
T Consensus 8 ~~~Ig~i~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 77 (290)
T 2rgy_A 8 LGIIGLFVPTFFG--------SYYGTILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISHD 77 (290)
T ss_dssp CCEEEEECSCSCS--------HHHHHHHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred CCeEEEEeCCCCC--------chHHHHHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHhcCccEEEEecCC
Confidence 3589988753211 1122233444456677898877766543321 334444 469999998754
No 160
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=42.30 E-value=21 Score=28.31 Aligned_cols=60 Identities=15% Similarity=0.091 Sum_probs=34.3
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGW 152 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~ 152 (203)
..+||+....... ..+..+.+..-++.++.|...++.....+.+...++ .+|||++.+..
T Consensus 8 ~~~Igvi~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~--~vdgiI~~~~~ 67 (277)
T 3cs3_A 8 TNIIGVYLADYGG--------SFYGELLEGIKKGLALFDYEMIVCSGKKSHLFIPEK--MVDGAIILDWT 67 (277)
T ss_dssp CCEEEEEECSSCT--------TTHHHHHHHHHHHHHTTTCEEEEEESTTTTTCCCTT--TCSEEEEECTT
T ss_pred CcEEEEEecCCCC--------hhHHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHhhc--cccEEEEecCC
Confidence 4589987653221 122233444445567788888777654333221222 89999998753
No 161
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=42.10 E-value=93 Score=24.28 Aligned_cols=76 Identities=14% Similarity=0.112 Sum_probs=46.9
Q ss_pred CEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHC--CCeEEEeecCCC-----------------------------
Q 028817 84 PVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESA--GARVIPLIYNEP----------------------------- 132 (203)
Q Consensus 84 PVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~A--GA~PV~LP~~~~----------------------------- 132 (203)
.|+.|.++++... .....+.+.+++.++++ |+.+..+-....
T Consensus 3 kiLii~gSpr~~~-------s~t~~l~~~~~~~~~~~~~g~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (212)
T 3r6w_A 3 RILAVHASPRGER-------SQSRRLAEVFLAAYREAHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADL 75 (212)
T ss_dssp CEEEEECCSCSTT-------CHHHHHHHHHHHHHHHHCTTCCEEEEESSSSCCCCCCHHHHHHHTCSSGGGCCHHHHHHH
T ss_pred EEEEEEeCCCCCC-------CHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHHhhcCCcccCCHHHHHHH
Confidence 4777888876411 13345778888888876 777665533110
Q ss_pred --HHHHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHH
Q 028817 133 --EEILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAI 171 (203)
Q Consensus 133 --~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~ 171 (203)
.+.+.+.+...|+|+| ..|.|+...--.+|-.++
T Consensus 76 ~~~~~~~~~l~~AD~iV~-----~~P~y~~~~pa~lK~~iD 111 (212)
T 3r6w_A 76 ALSDQLVGELFDSDLLVI-----STPMYNFSVPSGLKAWID 111 (212)
T ss_dssp HHHHHHHHHHHHCSEEEE-----EEECBTTBCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCEEEE-----EcCcccccCCHHHHHHHH
Confidence 1233456888999999 468888654444444444
No 162
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=42.09 E-value=62 Score=27.00 Aligned_cols=60 Identities=12% Similarity=0.070 Sum_probs=38.9
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHHHHHHHHHh-----cCEEEeCCCCCCCCcChHHHHHHHHHHHHH
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEEILFEKLKL-----VNGVLLTGGWAKKGLYFQIVEKIFKHEAIY 172 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~-----VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~ 172 (203)
.+|.+.++..|+.++.++.+ +.+.++++++. ...|+++.-.......+. .+.|.+.+.+.
T Consensus 143 ~~~~~~~~~~g~~~~~v~~~-d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~-l~~i~~l~~~~ 207 (401)
T 2bwn_A 143 ASMIEGIKRNAGPKRIFRHN-DVAHLRELIAADDPAAPKLIAFESVYSMDGDFGP-IKEICDIAEEF 207 (401)
T ss_dssp HHHHHHHHHSCCCEEEECTT-CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCC-HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCeEEEEcCC-CHHHHHHHHHhhccCCceEEEEecCcCCCCCcCC-HHHHHHHHHHc
Confidence 34556678899999999975 67888888873 446777664432222222 45666666553
No 163
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=42.05 E-value=34 Score=27.38 Aligned_cols=58 Identities=10% Similarity=0.059 Sum_probs=37.2
Q ss_pred HHHHHHHHHCCCeEEEeecC------CC--------HHHHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHH
Q 028817 111 ASYVKFVESAGARVIPLIYN------EP--------EEILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYE 173 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~------~~--------~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n 173 (203)
..|+......|+.+-+|-.. .+ ...+.+.++..|||+| +.|.|-+...-.+|-++++=
T Consensus 22 a~~~~~~~~~~~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~aD~~ii-----~tPeYn~s~pg~LKn~iDwl 93 (190)
T 3u7r_A 22 MKVLQKLAEGRLEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEHSDAVLA-----ITPEYNRSYPGMIKNAIDWA 93 (190)
T ss_dssp HHHHHHHHTTTEEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHTSSEEEE-----ECCCBTTBCCHHHHHHHHHH
T ss_pred HHHHHHhccCCCEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHhCCcEEE-----echhhcccCCHHHHHHHHHh
Confidence 34555555567666554321 11 1356788999999999 57888877666666666653
No 164
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=41.99 E-value=92 Score=25.52 Aligned_cols=62 Identities=21% Similarity=0.090 Sum_probs=35.4
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHH----HHHHH-HhcCEEEeCCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEI----LFEKL-KLVNGVLLTGGW 152 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~----l~~~L-d~VDGVLLTGG~ 152 (203)
..+||+....... ..+..+.+..-+.+++.|-..++.....+.+. ++.++ ..+|||++.+..
T Consensus 58 ~~~Igvi~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 124 (340)
T 1qpz_A 58 TKSIGLLATSSEA--------AYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSE 124 (340)
T ss_dssp CSEEEEEESCSCS--------HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred CCEEEEEeCCCCC--------hHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 4589987643211 11222334444456678988877665444433 33333 369999998754
No 165
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=41.68 E-value=40 Score=26.41 Aligned_cols=62 Identities=19% Similarity=0.109 Sum_probs=34.3
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHH----HHHHH-HhcCEEEeCCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEI----LFEKL-KLVNGVLLTGGW 152 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~----l~~~L-d~VDGVLLTGG~ 152 (203)
..+||+....... ..+..+.+..-+++++.|-..++.....+.+. ++.++ ..+|||++.+..
T Consensus 3 s~~Ig~i~~~~~~--------~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 69 (275)
T 3d8u_A 3 AYSIALIIPSLFE--------KACAHFLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLESRPAGVVLFGSE 69 (275)
T ss_dssp -CEEEEEESCSSC--------HHHHHHHHHHHHHHHHTSCEECCEECTTCHHHHHHHHHHHHTSCCCCEEEESSC
T ss_pred ceEEEEEeCCCcc--------ccHHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 3478887643211 11222334444566778888877765544433 23333 458999998753
No 166
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=41.15 E-value=41 Score=27.09 Aligned_cols=67 Identities=13% Similarity=0.159 Sum_probs=36.1
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHH-----HhcCEEEeCCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKL-----KLVNGVLLTGGW 152 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~L-----d~VDGVLLTGG~ 152 (203)
..+||+........ ......+..+.+..-+.+++.|-..++.....+.+.-.+++ ..+|||++.+..
T Consensus 22 ~~~Igvi~~~~~~~---~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 93 (305)
T 3huu_A 22 TLTIGLIQKSSAPE---IRQNPFNSDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSL 93 (305)
T ss_dssp CCEEEEECSCCSHH---HHTSHHHHHHHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCB
T ss_pred CCEEEEEeCCCccc---cccCcHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 46899876641100 00011122334444456677898888776554433222222 469999998754
No 167
>4fey_A Phosphoglycerate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: ADP; 2.30A {Francisella tularensis subsp} PDB: 4ehj_A
Probab=40.36 E-value=25 Score=32.32 Aligned_cols=78 Identities=12% Similarity=0.094 Sum_probs=53.5
Q ss_pred HHHHHHHHH---CCCeEEEeecCC-----CHHHHHHHHHhcCEEEeCCC----------CC-----CCCcChHHHHHHHH
Q 028817 111 ASYVKFVES---AGARVIPLIYNE-----PEEILFEKLKLVNGVLLTGG----------WA-----KKGLYFQIVEKIFK 167 (203)
Q Consensus 111 ~sYVkaVe~---AGA~PV~LP~~~-----~~e~l~~~Ld~VDGVLLTGG----------~D-----VdP~yY~~~~~I~~ 167 (203)
+.=++++.+ .-.+|++.-... -...++.+++.+|.|++.|| .+ ++....+.++.|++
T Consensus 171 ~kEl~~l~k~l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~Sl~E~d~~~~a~~il~ 250 (395)
T 4fey_A 171 TNEIQALEKALKSPKKPMAAIVGGSKVSTKLSVLNNLLDKVEILIVGGGIANTFIKAEGFDVGNSLYEQDLVAEATEILA 250 (395)
T ss_dssp HHHHHHHHHHHTSCCSSEEEEEEESCHHHHHHHHHHHTTTCSEEEEEEHHHHHHHHHTTCCCTTCCCCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCceEEEEeCccHHHHHHHHHHHHHhcCEEEEChHHHHHHHHHcCCccCccccchhhHHHHHHHHH
Confidence 444455433 457776655432 23478889999999999987 22 45566678999999
Q ss_pred HHHHHHhCCCCcceEeeCCcc
Q 028817 168 HEAIYERKKQSLVHGITGDVV 188 (203)
Q Consensus 168 ~AL~~n~~g~~PV~Gic~~~~ 188 (203)
+|.+++.+=-.||=.+|....
T Consensus 251 ~a~~~g~~i~LPvD~vva~~f 271 (395)
T 4fey_A 251 KAKALGVNIPVPVDVRVAKEF 271 (395)
T ss_dssp HHHHTTCBCCCCSEEEEESSS
T ss_pred HHHHcCCEEEccceEEEeccc
Confidence 988766554449988887543
No 168
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=40.21 E-value=89 Score=25.52 Aligned_cols=61 Identities=16% Similarity=0.135 Sum_probs=34.9
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHH----HHHHH-HhcCEEEeCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEI----LFEKL-KLVNGVLLTGG 151 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~----l~~~L-d~VDGVLLTGG 151 (203)
..+||+....... .....+.+..-+.+++.|-..++.....+.+. ++.++ ..+|||++.+.
T Consensus 63 ~~~Ig~i~~~~~~--------~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 128 (332)
T 2o20_A 63 TTTVGVILPTITS--------TYFAAITRGVDDIASMYKYNMILANSDNDVEKEEKVLETFLSKQVDGIVYMGS 128 (332)
T ss_dssp CCEEEEEESCTTC--------HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECSS
T ss_pred CCEEEEEeCCCCC--------cHHHHHHHHHHHHHHHcCCEEEEEECCCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 4579987643211 11222334444456678988887765544432 33333 46999999875
No 169
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Probab=39.96 E-value=1.4e+02 Score=24.03 Aligned_cols=46 Identities=9% Similarity=0.126 Sum_probs=32.2
Q ss_pred hhhHHHHHHHHHCCCeEEEeec------------------C-CCHHHHHHHHH-------hcCEEEeCCCCC
Q 028817 108 YIAASYVKFVESAGARVIPLIY------------------N-EPEEILFEKLK-------LVNGVLLTGGWA 153 (203)
Q Consensus 108 yI~~sYVkaVe~AGA~PV~LP~------------------~-~~~e~l~~~Ld-------~VDGVLLTGG~D 153 (203)
.|....++.+.+.|+.++++-- + .+.+.+++.++ .+|.|+-.-|..
T Consensus 27 gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~ 98 (266)
T 3p19_A 27 GIGEAIARRFSEEGHPLLLLARRVERLKALNLPNTLCAQVDVTDKYTFDTAITRAEKIYGPADAIVNNAGMM 98 (266)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESCHHHHHTTCCTTEEEEECCTTCHHHHHHHHHHHHHHHCSEEEEEECCCCC
T ss_pred HHHHHHHHHHHHCCCEEEEEECCHHHHHHhhcCCceEEEecCCCHHHHHHHHHHHHHHCCCCCEEEECCCcC
Confidence 5788888888888988876532 1 23455566665 789999887753
No 170
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=39.89 E-value=76 Score=25.46 Aligned_cols=61 Identities=8% Similarity=-0.043 Sum_probs=34.2
Q ss_pred CEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHH----HHHHH-HhcCEEEeCCCC
Q 028817 84 PVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEI----LFEKL-KLVNGVLLTGGW 152 (203)
Q Consensus 84 PVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~----l~~~L-d~VDGVLLTGG~ 152 (203)
.+||++...... .....+.+..-+.+++.|-..++.....+.+. ++.++ ..+|||++.+..
T Consensus 3 ~~Ig~i~~~~~~--------~~~~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~ 68 (306)
T 2vk2_A 3 LTVGFSQVGSES--------GWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVV 68 (306)
T ss_dssp CEEEEEECCCCS--------HHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSS
T ss_pred eEEEEEeCCCCC--------HHHHHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 478887654221 11122333334456778988877765444332 33333 569999998643
No 171
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=39.89 E-value=29 Score=26.58 Aligned_cols=58 Identities=17% Similarity=0.169 Sum_probs=35.3
Q ss_pred chhhhHHHHHHHHHCCCeEEEeecCCC------------------HHHHHHHHHhcCEEEeCCCCCCCCcChH----HHH
Q 028817 106 ASYIAASYVKFVESAGARVIPLIYNEP------------------EEILFEKLKLVNGVLLTGGWAKKGLYFQ----IVE 163 (203)
Q Consensus 106 ~syI~~sYVkaVe~AGA~PV~LP~~~~------------------~e~l~~~Ld~VDGVLLTGG~DVdP~yY~----~~~ 163 (203)
...+.+...+.+++.|+.+-++..... ... .+.+...|+|+|. .|.|++ ..+
T Consensus 17 T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~d~~~~~~-~~~l~~aD~ii~g-----sP~y~~~~~~~lk 90 (199)
T 2zki_A 17 IVELAKEIGKGAEEAGAEVKIRRVRETLPPEFQSRIPFDKVKDIPEVT-LDDMRWADGFAIG-----SPTRYGNMAGGLK 90 (199)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEECCCCSCGGGGTTCCGGGSTTSCBCC-HHHHHHCSEEEEE-----EECBTTBCCHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEEehhHhCChhhhhccCCCccccccccc-HHHHHhCCEEEEE-----CCccccCccHHHH
Confidence 456777777888888887766544321 112 4467789999983 345553 345
Q ss_pred HHHHHH
Q 028817 164 KIFKHE 169 (203)
Q Consensus 164 ~I~~~A 169 (203)
.++++.
T Consensus 91 ~~ld~~ 96 (199)
T 2zki_A 91 TFLDTT 96 (199)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 555544
No 172
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=39.60 E-value=1.4e+02 Score=23.77 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=11.7
Q ss_pred hhhHHHHHHHHHCCCeEEEe
Q 028817 108 YIAASYVKFVESAGARVIPL 127 (203)
Q Consensus 108 yI~~sYVkaVe~AGA~PV~L 127 (203)
.+.+..++.+.+.|+.++++
T Consensus 36 gIG~~~a~~l~~~G~~v~~~ 55 (269)
T 3gk3_A 36 GLGAAISRRLHDAGMAVAVS 55 (269)
T ss_dssp HHHHHHHHHHHTTTCEEEEE
T ss_pred hHHHHHHHHHHHCCCEEEEE
Confidence 35556666666666665554
No 173
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=39.13 E-value=1e+02 Score=24.21 Aligned_cols=64 Identities=11% Similarity=-0.017 Sum_probs=34.2
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeec--CCCHH----HHHHHH-HhcCEEEeCCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIY--NEPEE----ILFEKL-KLVNGVLLTGGW 152 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~--~~~~e----~l~~~L-d~VDGVLLTGG~ 152 (203)
..+||+....... . ...+..+.+..-+++++.|...+++.. ..+.+ .++.++ +.+|||++.+..
T Consensus 5 ~~~Ig~v~~~~~~-----~-~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 75 (289)
T 3brs_A 5 QYYMICIPKVLDD-----S-SDFWSVLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAAD 75 (289)
T ss_dssp CCEEEEECSCCCS-----S-SHHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSC
T ss_pred CcEEEEEeCCCCC-----C-chHHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 3578987653210 0 011222334444456677888877765 23332 233333 469999998753
No 174
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=38.88 E-value=1.5e+02 Score=23.91 Aligned_cols=36 Identities=8% Similarity=0.051 Sum_probs=17.1
Q ss_pred CCCCCCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEe
Q 028817 78 RRLNNRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPL 127 (203)
Q Consensus 78 ~~~~~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~L 127 (203)
..+....++-|++..+ .|....++.+.+.|+.++++
T Consensus 19 ~~m~~~k~~lVTGas~--------------GIG~aia~~la~~G~~V~~~ 54 (279)
T 3sju_A 19 SHMSRPQTAFVTGVSS--------------GIGLAVARTLAARGIAVYGC 54 (279)
T ss_dssp ------CEEEEESTTS--------------HHHHHHHHHHHHTTCEEEEE
T ss_pred ccccCCCEEEEeCCCC--------------HHHHHHHHHHHHCCCEEEEE
Confidence 3444445666766542 35555556666666665544
No 175
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=38.41 E-value=79 Score=25.05 Aligned_cols=60 Identities=13% Similarity=-0.003 Sum_probs=33.0
Q ss_pred CEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCC-eEEEeecCCCHHH----HHHHH-HhcCEEEeCCC
Q 028817 84 PVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGA-RVIPLIYNEPEEI----LFEKL-KLVNGVLLTGG 151 (203)
Q Consensus 84 PVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA-~PV~LP~~~~~e~----l~~~L-d~VDGVLLTGG 151 (203)
.+||++...... ..+..+.+..-+++++.|. ..++.....+.+. ++.++ ..+|||++.+.
T Consensus 3 ~~Igvi~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~ 68 (309)
T 2fvy_A 3 TRIGVTIYKYDD--------NFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLV 68 (309)
T ss_dssp EEEEEEESCTTS--------HHHHHHHHHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred cEEEEEeccCCc--------HHHHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 478887643211 1122344444455667787 7766665444432 33333 46999999764
No 176
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=37.92 E-value=89 Score=25.36 Aligned_cols=85 Identities=14% Similarity=0.091 Sum_probs=50.5
Q ss_pred chhhhHHHHHH-HHHCCCeEEEeecCCCHHHHHHHHH--hcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceE
Q 028817 106 ASYIAASYVKF-VESAGARVIPLIYNEPEEILFEKLK--LVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHG 182 (203)
Q Consensus 106 ~syI~~sYVka-Ve~AGA~PV~LP~~~~~e~l~~~Ld--~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~G 182 (203)
.+-+....+.. ++.+|..++-|-.+.+.+++.+.+. ..|-|.++|+.-..+ .....+.+.+...+...+.+.|| .
T Consensus 104 ~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~-~~~~~~~~i~~l~~~~~~~~v~v-~ 181 (215)
T 3ezx_A 104 IHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTT-SMLGQKDLMDRLNEEKLRDSVKC-M 181 (215)
T ss_dssp CCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHH-HHTHHHHHHHHHHHTTCGGGSEE-E
T ss_pred hhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccC-cHHHHHHHHHHHHHcCCCCCCEE-E
Confidence 35678888885 5779999999988777777644433 578899977665432 22233333333333222212354 3
Q ss_pred eeCCcccccc
Q 028817 183 ITGDVVQKDY 192 (203)
Q Consensus 183 ic~~~~~~~~ 192 (203)
+.|..+.+|+
T Consensus 182 vGG~~~~~~~ 191 (215)
T 3ezx_A 182 FGGAPVSDKW 191 (215)
T ss_dssp EESSSCCHHH
T ss_pred EECCCCCHHH
Confidence 4555666664
No 177
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=37.85 E-value=90 Score=25.37 Aligned_cols=76 Identities=16% Similarity=0.070 Sum_probs=49.1
Q ss_pred CEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCC-------C------------------------
Q 028817 84 PVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNE-------P------------------------ 132 (203)
Q Consensus 84 PVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~-------~------------------------ 132 (203)
.|+.|.++++.. .....+.+.+++.+++.|..+-++-... +
T Consensus 3 kiLiI~gspr~~--------S~t~~l~~~~~~~l~~~g~ev~~~dL~~~~~~P~~~~~~~~~~~~~~~~~~~~~e~~~~~ 74 (228)
T 3tem_A 3 KVLIVYAHQEPK--------SFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAY 74 (228)
T ss_dssp EEEEEECCSCTT--------SHHHHHHHHHHHHHHHHTCEEEEEETTTTTCCCCCCGGGBCSCCSCTTSCCHHHHHHHHH
T ss_pred EEEEEEeCCCCC--------CHHHHHHHHHHHHHHHCCCEEEEEEhhhcCCcccCCHHHHhhhccccccccchhhhhhhh
Confidence 477788888642 1345678888899988888776664321 0
Q ss_pred -----HH---HHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHH
Q 028817 133 -----EE---ILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIY 172 (203)
Q Consensus 133 -----~e---~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~ 172 (203)
.+ ...+.+...|+|+| ..|.|+...--++|..++.
T Consensus 75 ~~~~~~dd~~~~~~~l~~aD~iv~-----~~P~y~~~~p~~lK~~iD~ 117 (228)
T 3tem_A 75 KQRSLASDITDEQKKVREADLVIF-----QFPLYWFSVPAILKGWMDR 117 (228)
T ss_dssp HHTCBCHHHHHHHHHHHHCSEEEE-----EEECBTTBCCHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHhCCEEEE-----ECChhhcccCHHHHHHHHH
Confidence 02 23445889999998 4688876554444444443
No 178
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}
Probab=37.39 E-value=1.5e+02 Score=23.42 Aligned_cols=45 Identities=22% Similarity=0.274 Sum_probs=33.4
Q ss_pred hhhHHHHHHHHHCCCeEEEeecC-------------CCHHHHHHHHHh-------cCEEEeCCCC
Q 028817 108 YIAASYVKFVESAGARVIPLIYN-------------EPEEILFEKLKL-------VNGVLLTGGW 152 (203)
Q Consensus 108 yI~~sYVkaVe~AGA~PV~LP~~-------------~~~e~l~~~Ld~-------VDGVLLTGG~ 152 (203)
.+....++.+.+.|+.++++--+ .+.+.+++.++. +|.|+..-|.
T Consensus 33 gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~d~~d~~~v~~~~~~~~~~~g~iD~li~~Ag~ 97 (251)
T 3orf_A 33 ALGAEVVKFFKSKSWNTISIDFRENPNADHSFTIKDSGEEEIKSVIEKINSKSIKVDTFVCAAGG 97 (251)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESSCCTTSSEEEECSCSSHHHHHHHHHHHHTTTCCEEEEEECCCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCcccccccceEEEeCCHHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 58888889999999998776432 245666677665 4999988774
No 179
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=37.32 E-value=1.3e+02 Score=23.57 Aligned_cols=20 Identities=25% Similarity=0.240 Sum_probs=12.6
Q ss_pred hhhHHHHHHHHHCCCeEEEe
Q 028817 108 YIAASYVKFVESAGARVIPL 127 (203)
Q Consensus 108 yI~~sYVkaVe~AGA~PV~L 127 (203)
.+....++.+.+.|+.++++
T Consensus 24 giG~~ia~~l~~~G~~v~~~ 43 (256)
T 3ezl_A 24 GIGTSICQRLHKDGFRVVAG 43 (256)
T ss_dssp HHHHHHHHHHHHTTEEEEEE
T ss_pred hHHHHHHHHHHHCCCEEEEE
Confidence 36666666666667666554
No 180
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=37.31 E-value=27 Score=27.10 Aligned_cols=46 Identities=11% Similarity=0.025 Sum_probs=28.2
Q ss_pred HHHHH-HHHHCCCeEEEeecC-CCHHH----HHHHHH--hcCEEEeCCCCCCCC
Q 028817 111 ASYVK-FVESAGARVIPLIYN-EPEEI----LFEKLK--LVNGVLLTGGWAKKG 156 (203)
Q Consensus 111 ~sYVk-aVe~AGA~PV~LP~~-~~~e~----l~~~Ld--~VDGVLLTGG~DVdP 156 (203)
..++. .+++.|+.++-.... ++.+. +++.++ .+|-|+.|||.-+.+
T Consensus 23 ~~~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g~ 76 (164)
T 2is8_A 23 HLAIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTNGGTGLAP 76 (164)
T ss_dssp HHHHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSST
T ss_pred HHHHHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCCCC
Confidence 33444 367789877644332 34443 444555 589999999976544
No 181
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=37.19 E-value=25 Score=27.45 Aligned_cols=40 Identities=15% Similarity=0.163 Sum_probs=23.2
Q ss_pred HHHCCCeEEEeecC-CCHH----HHHHHHH-hcCEEEeCCCCCCCC
Q 028817 117 VESAGARVIPLIYN-EPEE----ILFEKLK-LVNGVLLTGGWAKKG 156 (203)
Q Consensus 117 Ve~AGA~PV~LP~~-~~~e----~l~~~Ld-~VDGVLLTGG~DVdP 156 (203)
+++.|+.++-.... ++.+ .+++.++ .+|-|+.|||.-+.+
T Consensus 38 l~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~~DlVittGG~g~~~ 83 (167)
T 2g2c_A 38 LQDYSYELISEVVVPEGYDTVVEAIATALKQGARFIITAGGTGIRA 83 (167)
T ss_dssp ---CEEEEEEEEEECSSHHHHHHHHHHHHHTTCSEEEEESCCSSST
T ss_pred HHHCCCEEeEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCC
Confidence 56788877544332 2333 3445555 389999999975433
No 182
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=37.09 E-value=49 Score=26.35 Aligned_cols=64 Identities=9% Similarity=0.005 Sum_probs=36.5
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCH---HHHHHHH--HhcCEEEeCCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPE---EILFEKL--KLVNGVLLTGGW 152 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~---e~l~~~L--d~VDGVLLTGG~ 152 (203)
..+||+....... .+ ..+..+.+..-+++++.|...++.....+. ..+.+.+ ..+|||++.+..
T Consensus 8 s~~Igvv~~~~~~-----~~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 76 (288)
T 3gv0_A 8 TNVIALVLSVDEE-----LM-GFTSQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKIE 76 (288)
T ss_dssp CCEEEEECBCCCC-----SS-CHHHHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCC
T ss_pred CCEEEEEecCCcc-----cc-HHHHHHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecCC
Confidence 4689988764321 00 112233344444566689888887764332 2344444 579999998743
No 183
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=36.80 E-value=81 Score=25.89 Aligned_cols=61 Identities=23% Similarity=0.152 Sum_probs=40.6
Q ss_pred HHHHHHHHCCCeEEEeecC-------CCHHHHHHHHH--hcCEEEeCCCCCCCCcCh--HHHHHHHHHHHHH
Q 028817 112 SYVKFVESAGARVIPLIYN-------EPEEILFEKLK--LVNGVLLTGGWAKKGLYF--QIVEKIFKHEAIY 172 (203)
Q Consensus 112 sYVkaVe~AGA~PV~LP~~-------~~~e~l~~~Ld--~VDGVLLTGG~DVdP~yY--~~~~~I~~~AL~~ 172 (203)
.|.+.++..|+.++.+|.. .+.+.+++.++ ....|+++--..-....+ +..+.|.+.+.+.
T Consensus 121 ~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~ 192 (391)
T 3dzz_A 121 MFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKH 192 (391)
T ss_dssp HHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCCCCCcccCHHHHHHHHHHHHHC
Confidence 4667888999999999874 46678888885 567777765444333333 3456666666553
No 184
>2wzb_A Phosphoglycerate kinase 1; hereditary hemolytic anemia, transferase, phosphoprotein, KI glycolysis, nucleotide-binding; HET: ADP 3PG; 1.47A {Homo sapiens} PDB: 2wzc_A* 2x13_A* 2x15_A* 2xe6_A* 2xe7_A* 2xe8_A* 2ybe_A* 3c3b_A* 2zgv_A* 3c3a_A* 3c39_A* 3c3c_A* 2wzd_A* 2x14_A* 2y3i_A* 1vjd_A* 1vjc_A* 1kf0_A* 1hdi_A* 2p9t_A* ...
Probab=36.35 E-value=27 Score=32.28 Aligned_cols=79 Identities=19% Similarity=0.209 Sum_probs=52.4
Q ss_pred HHHHHHHCCCeEEEeecCCC-----HHHHHHHHHhcCEEEeCCC----------CC-CCCcCh-----HHHHHHHHHHHH
Q 028817 113 YVKFVESAGARVIPLIYNEP-----EEILFEKLKLVNGVLLTGG----------WA-KKGLYF-----QIVEKIFKHEAI 171 (203)
Q Consensus 113 YVkaVe~AGA~PV~LP~~~~-----~e~l~~~Ld~VDGVLLTGG----------~D-VdP~yY-----~~~~~I~~~AL~ 171 (203)
|+..+...-.+|++.-.... ...++.+++.+|.|++.|| .+ |.-+++ +.++.|+++|.+
T Consensus 195 ~l~kal~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~TFl~A~G~~~iG~Sl~E~d~~~~a~~ll~ka~~ 274 (416)
T 2wzb_A 195 YFAKALESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAKIVKDLMSKAEK 274 (416)
T ss_dssp HHHHHHHSCCSSEEEEECSSCHHHHGGGHHHHTTTCSEEEECGGGHHHHHHHHHCCCCTTSCCCHHHHTTHHHHHHHHHH
T ss_pred HHHHHhcCCCCCeEEEEcCcchhhHHHHHHHHHHhcCeeeeChHHHHHHHHHcCCCcccchhcChhhHHHHHHHHHHHHH
Confidence 33334445688876655422 3478899999999999998 24 444444 568889999866
Q ss_pred HHhCCCCcceEeeCCccccc
Q 028817 172 YERKKQSLVHGITGDVVQKD 191 (203)
Q Consensus 172 ~n~~g~~PV~Gic~~~~~~~ 191 (203)
++.+=-.||=-+|....-.|
T Consensus 275 ~g~~i~lPvD~vva~~f~~~ 294 (416)
T 2wzb_A 275 NGVKITLPVDFVTADKFDEN 294 (416)
T ss_dssp TTCEEECCCEEEEESSSSTT
T ss_pred cCCEEECCcchhhhhccCCC
Confidence 55432239988888755443
No 185
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=36.30 E-value=63 Score=25.83 Aligned_cols=73 Identities=12% Similarity=0.089 Sum_probs=47.2
Q ss_pred CEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeec-------CCCHHHHHHHHHhcCEEEeCCCCCCCC
Q 028817 84 PVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIY-------NEPEEILFEKLKLVNGVLLTGGWAKKG 156 (203)
Q Consensus 84 PVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~-------~~~~e~l~~~Ld~VDGVLLTGG~DVdP 156 (203)
.|..|.++++.. .+.+.+..++.++++|+.+-++-. ..+.+...+.+...|+|+| ..|
T Consensus 3 kiLiI~gsp~~~----------~s~l~~~l~~~~~~~g~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~-----~~P 67 (192)
T 3f2v_A 3 KTLIILAHPNIS----------QSTVHKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVW-----QFP 67 (192)
T ss_dssp CEEEEECCTTGG----------GCSHHHHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEE-----EEE
T ss_pred EEEEEEeCCCcc----------HHHHHHHHHHHHHhCCCeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEE-----EcC
Confidence 477788887531 135777778888888875555432 1345566778999999999 468
Q ss_pred cChHHHHHHHHHHHH
Q 028817 157 LYFQIVEKIFKHEAI 171 (203)
Q Consensus 157 ~yY~~~~~I~~~AL~ 171 (203)
.|+...--++|.-++
T Consensus 68 ~y~~~~pa~lK~~iD 82 (192)
T 3f2v_A 68 IYWFNCPPLLKQWLD 82 (192)
T ss_dssp CBTTBCCHHHHHHHH
T ss_pred hhhcCCCHHHHHHHH
Confidence 787644333333333
No 186
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=35.93 E-value=94 Score=25.14 Aligned_cols=60 Identities=3% Similarity=-0.113 Sum_probs=33.3
Q ss_pred CCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCC------eEEEeecCCCHHHH----HHHHH-hcCEEEeCC
Q 028817 82 NRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGA------RVIPLIYNEPEEIL----FEKLK-LVNGVLLTG 150 (203)
Q Consensus 82 ~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA------~PV~LP~~~~~e~l----~~~Ld-~VDGVLLTG 150 (203)
+...|||.....+ ....-+.+...+.+++.|- ..+......+.+.. +.+.+ ++|||++.|
T Consensus 7 ~t~~IGvi~~~~~---------p~~~~~~~gi~~~l~~~Gy~~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~ 77 (302)
T 2qh8_A 7 KTAKVAVSQIVEH---------PALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIA 77 (302)
T ss_dssp CCEEEEEEESSCC---------HHHHHHHHHHHHHHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEES
T ss_pred CCcEEEEEEeccC---------hhHHHHHHHHHHHHHHcCCCCCCceEEEEecCCCCHHHHHHHHHHHHhCCCCEEEECC
Confidence 4568999843211 1223345555666777887 33334444444433 33333 599999986
No 187
>1o1z_A GDPD, glycerophosphodiester phosphodiesterase; TM1621, glycerophosphodiester phosphodiesterase (GDPD), STRU genomics, JCSG, PSI; 1.60A {Thermotoga maritima} SCOP: c.1.18.3
Probab=35.75 E-value=63 Score=26.19 Aligned_cols=36 Identities=14% Similarity=0.232 Sum_probs=29.4
Q ss_pred HHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEE
Q 028817 111 ASYVKFVESAGARVIPLIYNEPEEILFEKLKLVNGVL 147 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVL 147 (203)
..+++.+.++|-.+.+.-. .+.++...+++.+|||+
T Consensus 188 ~~~v~~~~~~G~~v~~wTv-n~~~~~~~l~~~vdgIi 223 (234)
T 1o1z_A 188 VEVLRSFRKKGIVIFVWTL-NDPEIYRKIRREIDGVI 223 (234)
T ss_dssp HHHHHHHHHTTCEEEEESC-CCHHHHHHHGGGCSEEE
T ss_pred HHHHHHHHHcCCEEEEeCC-CCHHHHHHHHHhCCEEE
Confidence 7888899999987777665 46778888888899987
No 188
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=35.69 E-value=1.4e+02 Score=24.12 Aligned_cols=36 Identities=17% Similarity=0.337 Sum_probs=19.6
Q ss_pred HHHCCCeEEEeecCC-CHHHHHHHHH-------hcCEEEeCCCC
Q 028817 117 VESAGARVIPLIYNE-PEEILFEKLK-------LVNGVLLTGGW 152 (203)
Q Consensus 117 Ve~AGA~PV~LP~~~-~~e~l~~~Ld-------~VDGVLLTGG~ 152 (203)
++..|.....+..+. +.+.+++.++ .+|.|+-.-|.
T Consensus 76 l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg~ 119 (271)
T 3v2g_A 76 IEQAGGRAVAIRADNRDAEAIEQAIRETVEALGGLDILVNSAGI 119 (271)
T ss_dssp HHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCcEEEECCCC
Confidence 334444444444432 4455555555 67888877664
No 189
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=35.47 E-value=26 Score=26.30 Aligned_cols=81 Identities=16% Similarity=0.143 Sum_probs=47.0
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHH-HHHCCCeEEEeecCC--CHHHH-HHHHHhcCEEEeCCCCCC-CCc
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKF-VESAGARVIPLIYNE--PEEIL-FEKLKLVNGVLLTGGWAK-KGL 157 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVka-Ve~AGA~PV~LP~~~--~~e~l-~~~Ld~VDGVLLTGG~DV-dP~ 157 (203)
..+++|++|+.. -..+|+.+.-++. .++.|-..=+=--.. ....+ .+.++..|+|||.+...| +..
T Consensus 3 mkivaVtaCptG---------iAhTymAAeaLekaA~~~G~~ikVEtqgs~g~~n~Lt~~~I~~AD~VIia~d~~v~~~~ 73 (106)
T 2m1z_A 3 RKIIAVTACATG---------VAHTYMAAQALKKGAKKMGNLIKVETQGATGIENELTEKDVNIGEVVIFAVDTKVRNKE 73 (106)
T ss_dssp CEEEEEEECSSC---------HHHHHHHHHHHHHHHHHHTCEEEEEEEETTEESSCCCHHHHHHCSEEEEEESSCCSTHH
T ss_pred ccEEEEEECCCc---------HHHHHHHHHHHHHHHHHCCCEEEEEEecCccccCCCCHHHHhhCCEEEEeccccccchh
Confidence 458999999742 1345554444443 344565443222111 01111 345789999999998877 466
Q ss_pred ChH--------------HHHHHHHHHHHH
Q 028817 158 YFQ--------------IVEKIFKHEAIY 172 (203)
Q Consensus 158 yY~--------------~~~~I~~~AL~~ 172 (203)
+|. ..+.+++++++.
T Consensus 74 RF~gk~v~~~~v~~~i~~~~~~l~~a~~~ 102 (106)
T 2m1z_A 74 RFDGKVVLEVPVSAPIKDAEKVINAALAL 102 (106)
T ss_dssp HHTTSEEEEECTTHHHHCHHHHHHHHHHH
T ss_pred ccCCCcEEEEcHHHHHHCHHHHHHHHHHH
Confidence 662 256777777764
No 190
>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A*
Probab=35.32 E-value=68 Score=26.21 Aligned_cols=41 Identities=17% Similarity=0.071 Sum_probs=31.9
Q ss_pred chhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHh-cCEEE
Q 028817 106 ASYIAASYVKFVESAGARVIPLIYNEPEEILFEKLKL-VNGVL 147 (203)
Q Consensus 106 ~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~-VDGVL 147 (203)
...+...+|+.+.++|-.+.+.-. .+.+++++++++ ||||+
T Consensus 189 ~~~~~~~~v~~~~~~G~~V~~WTv-n~~~~~~~l~~~GVDgIi 230 (250)
T 3ks6_A 189 IDTADAGLMAQVQAAGLDFGCWAA-HTPSQITKALDLGVKVFT 230 (250)
T ss_dssp GGGCCHHHHHHHHHTTCEEEEECC-CSHHHHHHHHHHTCSEEE
T ss_pred hhhCCHHHHHHHHHCCCEEEEEeC-CCHHHHHHHHHcCCCEEE
Confidence 345678899999999987777755 467788888886 89986
No 191
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=35.07 E-value=82 Score=25.69 Aligned_cols=62 Identities=13% Similarity=0.141 Sum_probs=34.4
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHH-----HhcCEEEeCCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKL-----KLVNGVLLTGGW 152 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~L-----d~VDGVLLTGG~ 152 (203)
..+||+....... ..+..+.+..-+++++.|-..++.....+.+...+++ ..+|||++.+..
T Consensus 60 ~~~Ig~i~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 126 (332)
T 2hsg_A 60 TTTVGVIIPDISN--------IFYAELARGIEDIATMYKYNIILSNSDQNQDKELHLLNNMLGKQVDGIIFMSGN 126 (332)
T ss_dssp CCEEEEEEC--CC--------SHHHHHHHHHHHHHHHHTCEEEEEECCSHHHHHHHHHHHTSCCSSCCEEECCSS
T ss_pred CCEEEEEeCCCCC--------cHHHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCC
Confidence 4589987653211 1122333444445667898887776544333323333 358999998753
No 192
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=41.18 E-value=8.1 Score=30.99 Aligned_cols=33 Identities=12% Similarity=0.214 Sum_probs=21.9
Q ss_pred HHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHH
Q 028817 135 ILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIY 172 (203)
Q Consensus 135 ~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~ 172 (203)
.+.+.+...|||+| ..|.|....--.+|-++++
T Consensus 66 ~~~~~i~~AD~iIi-----~tP~Y~~s~p~~lK~~iD~ 98 (199)
T 3s2y_A 66 TMAQQIATADAVVI-----VTPEYNYSVPGVLKNAIDW 98 (199)
Confidence 45667778899988 4677777655555555553
No 193
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=34.81 E-value=38 Score=25.88 Aligned_cols=33 Identities=33% Similarity=0.496 Sum_probs=27.1
Q ss_pred hHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHh
Q 028817 110 AASYVKFVESAGARVIPLIYNEPEEILFEKLKL 142 (203)
Q Consensus 110 ~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~ 142 (203)
++.-++++...||.+++|.|+.+..+++++-..
T Consensus 64 aekairfvkslgaqvliiiydqdqnrleefsre 96 (134)
T 2l69_A 64 AEKAIRFVKSLGAQVLIIIYDQDQNRLEEFSRE 96 (134)
T ss_dssp HHHHHHHHHHHCCCCEEEEECSCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEEEEeCchhHHHHHHHH
Confidence 456678889999999999999998888776544
No 194
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}
Probab=34.80 E-value=98 Score=23.23 Aligned_cols=45 Identities=16% Similarity=0.127 Sum_probs=33.6
Q ss_pred hhhHHHHHHHHHCCCeEEEeecC--------CCHHHHHHHHHh---cCEEEeCCCCC
Q 028817 108 YIAASYVKFVESAGARVIPLIYN--------EPEEILFEKLKL---VNGVLLTGGWA 153 (203)
Q Consensus 108 yI~~sYVkaVe~AGA~PV~LP~~--------~~~e~l~~~Ld~---VDGVLLTGG~D 153 (203)
++.+..++.+. .|+.++.+--. .+.+.+++.++. +|.|+-.-|..
T Consensus 14 ~iG~~~~~~l~-~g~~V~~~~r~~~~~~~D~~~~~~~~~~~~~~~~~d~vi~~ag~~ 69 (202)
T 3d7l_A 14 TLGSAVKERLE-KKAEVITAGRHSGDVTVDITNIDSIKKMYEQVGKVDAIVSATGSA 69 (202)
T ss_dssp HHHHHHHHHHT-TTSEEEEEESSSSSEECCTTCHHHHHHHHHHHCCEEEEEECCCCC
T ss_pred HHHHHHHHHHH-CCCeEEEEecCccceeeecCCHHHHHHHHHHhCCCCEEEECCCCC
Confidence 58888888888 89988776322 246677888887 89999988753
No 195
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=34.69 E-value=46 Score=26.50 Aligned_cols=35 Identities=11% Similarity=0.149 Sum_probs=24.7
Q ss_pred HHHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHH
Q 028817 134 EILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYE 173 (203)
Q Consensus 134 e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n 173 (203)
..+.+.+...|||+| ..|.|+...--.+|-++++-
T Consensus 65 ~~~~~~i~~AD~iVi-----~tP~Y~~s~p~~LK~~iD~~ 99 (199)
T 4hs4_A 65 LTMAQQIATADAVVI-----VTPEYNYSVPGVLKNAIDWL 99 (199)
T ss_dssp HHHHHHHHHSSEEEE-----EECCBTTBCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEE-----EcCccCCCcCHHHHHHHHHh
Confidence 356778999999999 56888866555555555544
No 196
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=34.48 E-value=1.4e+02 Score=24.35 Aligned_cols=36 Identities=11% Similarity=0.230 Sum_probs=20.2
Q ss_pred HHCCCeEEEeecCC-CHHHHHHHHH-------hcCEEEeCCCCC
Q 028817 118 ESAGARVIPLIYNE-PEEILFEKLK-------LVNGVLLTGGWA 153 (203)
Q Consensus 118 e~AGA~PV~LP~~~-~~e~l~~~Ld-------~VDGVLLTGG~D 153 (203)
+..|.....+..+. +.+.+++.++ .+|.|+-.-|..
T Consensus 77 ~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~ 120 (276)
T 3r1i_A 77 AGVGGKALPIRCDVTQPDQVRGMLDQMTGELGGIDIAVCNAGIV 120 (276)
T ss_dssp HHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred HhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 33333333343332 4556666666 689988877753
No 197
>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri}
Probab=33.89 E-value=77 Score=25.60 Aligned_cols=40 Identities=20% Similarity=0.257 Sum_probs=31.3
Q ss_pred hhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHh-cCEEE
Q 028817 107 SYIAASYVKFVESAGARVIPLIYNEPEEILFEKLKL-VNGVL 147 (203)
Q Consensus 107 syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~-VDGVL 147 (203)
..+...+|+.+.++|-.+.+.-.+ +.+++..+++. ||||+
T Consensus 193 ~~~~~~~v~~~~~~G~~v~~wTvn-~~~~~~~l~~~GvdgI~ 233 (247)
T 2otd_A 193 KLLDKARVMQLKDAGLRILVYTVN-KPQHAAELLRWGVDCIC 233 (247)
T ss_dssp GGCCHHHHHHHHHTTCEEEEECCC-CHHHHHHHHHHTCSEEE
T ss_pred HhCCHHHHHHHHHCCCEEEEEccC-CHHHHHHHHHcCCCEEE
Confidence 346688999999999877777654 67778888887 99976
No 198
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=33.55 E-value=50 Score=26.61 Aligned_cols=43 Identities=19% Similarity=0.189 Sum_probs=30.3
Q ss_pred hHHHHHHHHHCCCeEEEeecCC----CHHHHHHH---H-HhcCEEEeCCCC
Q 028817 110 AASYVKFVESAGARVIPLIYNE----PEEILFEK---L-KLVNGVLLTGGW 152 (203)
Q Consensus 110 ~~sYVkaVe~AGA~PV~LP~~~----~~e~l~~~---L-d~VDGVLLTGG~ 152 (203)
...+.+.+++.|+.++.+|... +.+.+++. + +..|+|+||-..
T Consensus 19 ~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~~~~l~~~~d~iiftS~~ 69 (261)
T 1wcw_A 19 KEAFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRALAQGVDLFLATTGV 69 (261)
T ss_dssp HHHHHHHHHHTTCEEEECCCEEEEECCGGGGHHHHHHHHTCCSEEEECCHH
T ss_pred hHHHHHHHHHCCCcEEEeccEEEecCCHHHHHHHHHhhccCCCEEEEeCHH
Confidence 4778889999999999988632 22333333 4 357999999764
No 199
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=33.49 E-value=83 Score=24.10 Aligned_cols=74 Identities=14% Similarity=0.069 Sum_probs=41.3
Q ss_pred chhhhHHHHHHHHH-CCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcCh----HHHHHHHHHHHH---HHhCCC
Q 028817 106 ASYIAASYVKFVES-AGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYF----QIVEKIFKHEAI---YERKKQ 177 (203)
Q Consensus 106 ~syI~~sYVkaVe~-AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY----~~~~~I~~~AL~---~n~~g~ 177 (203)
...+.+...+.+++ .|..+-++...... .+.+...|+|+|-- |.|+ ...+.+++.... ..-+|.
T Consensus 18 T~~~a~~i~~~l~~~~g~~v~~~~l~~~~---~~~l~~aD~ii~gs-----P~y~g~~~~~lk~fld~~~~~~~~~l~gk 89 (188)
T 2ark_A 18 TKKMAELVAEGARSLEGTEVRLKHVDEAT---KEDVLWADGLAVGS-----PTNMGLVSWKMKRFFDDVLGDLWGEIDGK 89 (188)
T ss_dssp HHHHHHHHHHHHHTSTTEEEEEEETTTCC---HHHHHHCSEEEEEE-----ECBTTBCCHHHHHHHHHTGGGTTTSCTTC
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEEhhhCC---HHHHHhCCEEEEEe-----CccCCcCCHHHHHHHHHHhhhhHHHhCCC
Confidence 34566777777777 77766666543321 23467789999843 4444 345555554322 112333
Q ss_pred C-cceEeeCCc
Q 028817 178 S-LVHGITGDV 187 (203)
Q Consensus 178 ~-PV~Gic~~~ 187 (203)
. =+++.|||.
T Consensus 90 ~~~~~~t~g~~ 100 (188)
T 2ark_A 90 IACAFSSSGGW 100 (188)
T ss_dssp EEEEEEEESSB
T ss_pred eEEEEEECCCC
Confidence 3 567777763
No 200
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}
Probab=33.48 E-value=1.7e+02 Score=22.77 Aligned_cols=20 Identities=25% Similarity=0.130 Sum_probs=13.3
Q ss_pred hhhHHHHHHHHHCCCeEEEe
Q 028817 108 YIAASYVKFVESAGARVIPL 127 (203)
Q Consensus 108 yI~~sYVkaVe~AGA~PV~L 127 (203)
.+....++.+.+.|+.++++
T Consensus 18 gIG~~~a~~l~~~G~~v~~~ 37 (255)
T 3icc_A 18 GIGRAIAKRLANDGALVAIH 37 (255)
T ss_dssp HHHHHHHHHHHHTTCEEEEE
T ss_pred hHHHHHHHHHHHCCCeEEEE
Confidence 46666677777777766654
No 201
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=33.37 E-value=86 Score=25.50 Aligned_cols=59 Identities=22% Similarity=0.035 Sum_probs=37.5
Q ss_pred HHHHHHHHCCCeEEEee--cCC----CHHHHHHHHH------hcCEEEeCCCCCCCCcChHHHHHHHHHHHH
Q 028817 112 SYVKFVESAGARVIPLI--YNE----PEEILFEKLK------LVNGVLLTGGWAKKGLYFQIVEKIFKHEAI 171 (203)
Q Consensus 112 sYVkaVe~AGA~PV~LP--~~~----~~e~l~~~Ld------~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~ 171 (203)
.+...++..|+.++.++ .+. +.+.+++.++ +...|+++....-....+. .+.|.+.+.+
T Consensus 105 ~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~~-~~~i~~~~~~ 175 (371)
T 2e7j_A 105 SSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPD-VKKIAKVCSE 175 (371)
T ss_dssp HHHHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCC-HHHHHHHHHT
T ss_pred HHHHHHHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCcccCC-HHHHHHHHHH
Confidence 44455788999999998 543 5678888886 5667888765433222222 2555555544
No 202
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*
Probab=33.31 E-value=1.7e+02 Score=23.63 Aligned_cols=21 Identities=10% Similarity=0.053 Sum_probs=12.2
Q ss_pred CHHHHHHHHH-------hcCEEEeCCCC
Q 028817 132 PEEILFEKLK-------LVNGVLLTGGW 152 (203)
Q Consensus 132 ~~e~l~~~Ld-------~VDGVLLTGG~ 152 (203)
+.+.+++.++ .+|.|+-.-|.
T Consensus 89 d~~~v~~~~~~~~~~~g~id~lv~nAg~ 116 (269)
T 4dmm_A 89 QESEVEALFAAVIERWGRLDVLVNNAGI 116 (269)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 3444555554 56777776664
No 203
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}
Probab=32.98 E-value=1.5e+02 Score=23.94 Aligned_cols=21 Identities=19% Similarity=0.218 Sum_probs=12.2
Q ss_pred CHHHHHHHHH-------hcCEEEeCCCC
Q 028817 132 PEEILFEKLK-------LVNGVLLTGGW 152 (203)
Q Consensus 132 ~~e~l~~~Ld-------~VDGVLLTGG~ 152 (203)
+.+.+++.++ .+|.|+-.-|.
T Consensus 86 d~~~v~~~~~~~~~~~g~iD~lv~nAg~ 113 (271)
T 4ibo_A 86 SESEIIEAFARLDEQGIDVDILVNNAGI 113 (271)
T ss_dssp CHHHHHHHHHHHHHHTCCCCEEEECCCC
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEECCCC
Confidence 3445555555 56777766664
No 204
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=32.97 E-value=1.1e+02 Score=24.15 Aligned_cols=60 Identities=10% Similarity=0.026 Sum_probs=34.8
Q ss_pred CEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHH----HHHHH-HhcCEEEeCCCC
Q 028817 84 PVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEI----LFEKL-KLVNGVLLTGGW 152 (203)
Q Consensus 84 PVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~----l~~~L-d~VDGVLLTGG~ 152 (203)
.+||+.... .. ..+..+.+..-+++++.|...++.....+.+. ++.++ ..+|||++.+..
T Consensus 9 ~~Igvi~~~-~~--------~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 73 (288)
T 2qu7_A 9 NIIAFIVPD-QN--------PFFTEVLTEISHECQKHHLHVAVASSEENEDKQQDLIETFVSQNVSAIILVPVK 73 (288)
T ss_dssp EEEEEEESS-CC--------HHHHHHHHHHHHHHGGGTCEEEEEECTTCHHHHHHHHHHHHHTTEEEEEECCSS
T ss_pred CEEEEEECC-CC--------chHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCccEEEEecCC
Confidence 578987654 21 11223334444456667888887765544332 33333 469999998754
No 205
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=32.84 E-value=99 Score=25.14 Aligned_cols=60 Identities=10% Similarity=0.028 Sum_probs=32.3
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHC-CCeEEEeecCCCHH----HHHHHH-HhcCEEEeCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESA-GARVIPLIYNEPEE----ILFEKL-KLVNGVLLTGG 151 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~A-GA~PV~LP~~~~~e----~l~~~L-d~VDGVLLTGG 151 (203)
..+||++... .. .....+.+..-+++++. |...++.....+.+ .++.++ ..+|||++.+.
T Consensus 6 ~~~Igvi~~~-~~--------~~~~~~~~gi~~~a~~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 71 (325)
T 2x7x_A 6 HFRIGVAQCS-DD--------SWRHKMNDEILREAMFYNGVSVEIRSAGDDNSKQAEDVHYFMDEGVDLLIISAN 71 (325)
T ss_dssp CCEEEEEESC-CS--------HHHHHHHHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CeEEEEEecC-CC--------HHHHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4589987643 21 01122333333345556 77777766544432 233333 46999999764
No 206
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=32.79 E-value=1.7e+02 Score=22.50 Aligned_cols=80 Identities=11% Similarity=0.010 Sum_probs=49.8
Q ss_pred hhhhHHHHHH-HHHCCCeEEEeecCCCHHHHHHHHH--hcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEe
Q 028817 107 SYIAASYVKF-VESAGARVIPLIYNEPEEILFEKLK--LVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGI 183 (203)
Q Consensus 107 syI~~sYVka-Ve~AGA~PV~LP~~~~~e~l~~~Ld--~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gi 183 (203)
+-+...++.. ++.+|..++.+..+.+.+++.+.+. ..|-|.++.-.. .+....+.+.+...+ +|..-|.-+
T Consensus 31 HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~~diV~lS~~~~---~~~~~~~~~i~~L~~---~g~~~i~v~ 104 (161)
T 2yxb_A 31 HDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQEDVDVIGVSILNG---AHLHLMKRLMAKLRE---LGADDIPVV 104 (161)
T ss_dssp CCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTTCSEEEEEESSS---CHHHHHHHHHHHHHH---TTCTTSCEE
T ss_pred cHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEeech---hhHHHHHHHHHHHHh---cCCCCCEEE
Confidence 4577888885 5779999999988777777766655 668888776433 344555555555444 332113344
Q ss_pred eCCcc-cccc
Q 028817 184 TGDVV-QKDY 192 (203)
Q Consensus 184 c~~~~-~~~~ 192 (203)
+||.. .+|+
T Consensus 105 vGG~~~~~~~ 114 (161)
T 2yxb_A 105 LGGTIPIPDL 114 (161)
T ss_dssp EEECCCHHHH
T ss_pred EeCCCchhcH
Confidence 56653 4454
No 207
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=32.59 E-value=83 Score=25.16 Aligned_cols=66 Identities=8% Similarity=-0.050 Sum_probs=36.5
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCC--CHHHH-HHHHH-hcCEEEeCCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNE--PEEIL-FEKLK-LVNGVLLTGGW 152 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~--~~e~l-~~~Ld-~VDGVLLTGG~ 152 (203)
..+||+........ .....+.-+.+..-+.+++.|-..++..... ....+ +.+.+ .+|||++.+..
T Consensus 6 s~~Igvi~~~~~~~----~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~ 75 (294)
T 3qk7_A 6 TDAIALAYPSRPRV----LNNSTFLEMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQ 75 (294)
T ss_dssp CCEEEEEEESCSGG----GSCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCC
T ss_pred cceEEEEecCCCcc----ccChhHHHHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCC
Confidence 45789876421100 1111122344444456677898888877642 22233 33333 79999998864
No 208
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=32.56 E-value=1.2e+02 Score=25.82 Aligned_cols=79 Identities=15% Similarity=0.127 Sum_probs=49.3
Q ss_pred CCCCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCC----------------------------
Q 028817 80 LNNRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNE---------------------------- 131 (203)
Q Consensus 80 ~~~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~---------------------------- 131 (203)
+....|.-|.+++.... ....+.+.+++.++++|..+-++-...
T Consensus 20 m~~MKiLII~aHP~~~S--------~n~aL~~~~~~~l~~~G~eV~v~DLy~~~f~p~l~~~~~~~~~~~~~~~~~~~~~ 91 (280)
T 4gi5_A 20 FQSMKVLLIYAHPEPRS--------LNGALKNFAIRHLQQAGHEVQVSDLYAMRWKAGYDADDSGAPPVGEFWRPTLDSK 91 (280)
T ss_dssp --CCEEEEEECCSCTTS--------HHHHHHHHHHHHHHHTTCEEEEEETTTTTCCCSCCGGGSSSSCSSSSCCHHHHHH
T ss_pred hhCCeEEEEEeCCCCcc--------HHHHHHHHHHHHHHHCCCeEEEEEccccCCCCcCCHHHhcccccccccChhhHHH
Confidence 33334767889986321 234578899999999998876663211
Q ss_pred ----------CHHHHHHHHHhcCEEEeCCCCCCCCcChHH----HHHHHHHHHH
Q 028817 132 ----------PEEILFEKLKLVNGVLLTGGWAKKGLYFQI----VEKIFKHEAI 171 (203)
Q Consensus 132 ----------~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~----~~~I~~~AL~ 171 (203)
+.....+.+...|.|+| +.|-|+-. .|..+++++.
T Consensus 92 ~~~~~~~~~~dv~~~~~~l~~aD~iv~-----~~P~~w~~~Pa~lK~~iDrv~~ 140 (280)
T 4gi5_A 92 QAFAQGTQSADIVAEQEKLLWADTVIF-----QFPLWWFSMPAIMKGWIDRVYA 140 (280)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHCSEEEE-----EEECBTTBCCHHHHHHHHHHSC
T ss_pred HHhhcCCCcHHHHHHHHHHHhCCEEEE-----EeccccccCcHHHHHHHHHhcc
Confidence 11233456888999999 56777754 4555555543
No 209
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}
Probab=32.53 E-value=1.6e+02 Score=24.36 Aligned_cols=36 Identities=11% Similarity=0.052 Sum_probs=19.7
Q ss_pred HHHCCCeEEEeecCC-CHHHHHHHHH-------hcCEEEeCCCC
Q 028817 117 VESAGARVIPLIYNE-PEEILFEKLK-------LVNGVLLTGGW 152 (203)
Q Consensus 117 Ve~AGA~PV~LP~~~-~~e~l~~~Ld-------~VDGVLLTGG~ 152 (203)
++..|.....+..+. +.+.++++++ .+|+|+-.-|.
T Consensus 81 ~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg~ 124 (322)
T 3qlj_A 81 ITAAGGEAVADGSNVADWDQAAGLIQTAVETFGGLDVLVNNAGI 124 (322)
T ss_dssp HHHTTCEEEEECCCTTSHHHHHHHHHHHHHHHSCCCEEECCCCC
T ss_pred HHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 334444444444332 3455555555 67888877765
No 210
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=32.09 E-value=46 Score=26.75 Aligned_cols=67 Identities=10% Similarity=0.120 Sum_probs=35.1
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHH---H--HhcCEEEeCCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEK---L--KLVNGVLLTGGW 152 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~---L--d~VDGVLLTGG~ 152 (203)
..+||+........ ......+.-+.+..-+.+++.|-..++.....+.+.-.++ + ..+|||++.+..
T Consensus 7 s~~Igvi~~~~~~~---~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~ 78 (295)
T 3hcw_A 7 TYKIGLVLKGSEEP---IRLNPFYINVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSK 78 (295)
T ss_dssp SCEEEEECSCCCHH---HHSCHHHHHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCC
T ss_pred CcEEEEEeecCCcc---cccChHHHHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCcc
Confidence 45899886421100 0001112223344444566788888777654433322222 2 469999998754
No 211
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*
Probab=31.94 E-value=1.8e+02 Score=22.88 Aligned_cols=36 Identities=11% Similarity=0.184 Sum_probs=18.9
Q ss_pred HHHCCCeEEEeecCC-CHHHHHHHHH-------hcCEEEeCCCC
Q 028817 117 VESAGARVIPLIYNE-PEEILFEKLK-------LVNGVLLTGGW 152 (203)
Q Consensus 117 Ve~AGA~PV~LP~~~-~~e~l~~~Ld-------~VDGVLLTGG~ 152 (203)
++..|.....+..+. +.+.+++.++ .+|.|+-.-|.
T Consensus 49 ~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~nAg~ 92 (246)
T 3osu_A 49 IKAKGVDSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGI 92 (246)
T ss_dssp HHHTTSCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 333444444444332 4445555555 67888776664
No 212
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=31.10 E-value=85 Score=24.88 Aligned_cols=62 Identities=19% Similarity=0.132 Sum_probs=32.5
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEe-ecCCCHH----HHHHHH-HhcCEEEeCCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPL-IYNEPEE----ILFEKL-KLVNGVLLTGGW 152 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~L-P~~~~~e----~l~~~L-d~VDGVLLTGG~ 152 (203)
..+||+....... ..+..+.+..-+++++.|...++. ....+.+ .++.++ ..+|||++.+..
T Consensus 8 ~~~Ig~i~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 75 (290)
T 3clk_A 8 SNVIAAVVSSVRT--------NFAQQILDGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIERPVMGILLLSIA 75 (290)
T ss_dssp CCEEEEECCCCSS--------SHHHHHHHHHHHHHHTTTCEEEEEC----------CHHHHHHSSCCSEEEEESCC
T ss_pred CCEEEEEeCCCCC--------hHHHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 4589988753221 122233444445566788887776 4432222 334444 469999997753
No 213
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2
Probab=31.01 E-value=1.8e+02 Score=22.95 Aligned_cols=37 Identities=11% Similarity=0.238 Sum_probs=23.1
Q ss_pred HHHHCCCeEEEeecCC-CHHHHHHHHH-------hcCEEEeCCCC
Q 028817 116 FVESAGARVIPLIYNE-PEEILFEKLK-------LVNGVLLTGGW 152 (203)
Q Consensus 116 aVe~AGA~PV~LP~~~-~~e~l~~~Ld-------~VDGVLLTGG~ 152 (203)
.++..|.....+..+. +.+.+++.++ .+|.|+-.-|.
T Consensus 45 ~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg~ 89 (256)
T 1geg_A 45 EINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFDVIVNNAGV 89 (256)
T ss_dssp HHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCCEEEECCCC
T ss_pred HHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 3444455555555443 4566666666 78999987764
No 214
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}
Probab=30.98 E-value=1.6e+02 Score=23.99 Aligned_cols=40 Identities=13% Similarity=0.188 Sum_probs=26.1
Q ss_pred HHHHHHCCCeEEEeecCC-CHHHHHHHHH-------hcCEEEeCCCCC
Q 028817 114 VKFVESAGARVIPLIYNE-PEEILFEKLK-------LVNGVLLTGGWA 153 (203)
Q Consensus 114 VkaVe~AGA~PV~LP~~~-~~e~l~~~Ld-------~VDGVLLTGG~D 153 (203)
.+.++..|.....+..+. +.+.+++.++ .+|.|+-.-|..
T Consensus 57 ~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg~~ 104 (285)
T 3sc4_A 57 AKEIEEAGGQALPIVGDIRDGDAVAAAVAKTVEQFGGIDICVNNASAI 104 (285)
T ss_dssp HHHHHHHTSEEEEEECCTTSHHHHHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred HHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 344555666666666543 4556666666 789999887753
No 215
>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A
Probab=30.82 E-value=1e+02 Score=24.59 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=31.5
Q ss_pred chhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHh-cCEEE
Q 028817 106 ASYIAASYVKFVESAGARVIPLIYNEPEEILFEKLKL-VNGVL 147 (203)
Q Consensus 106 ~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~-VDGVL 147 (203)
...+...+++.+.++|-.+.+.-.+ +.++...+++. +|||+
T Consensus 171 ~~~~~~~~v~~~~~~G~~v~~wtvn-~~~~~~~l~~~GvdgI~ 212 (224)
T 1vd6_A 171 HALVTEEAVAGWRKRGLFVVAWTVN-EEGEARRLLALGLDGLI 212 (224)
T ss_dssp GGGCCHHHHHHHHHTTCEEEEECCC-CHHHHHHHHHTTCSEEE
T ss_pred cccCCHHHHHHHHHCCCEEEEEeCC-CHHHHHHHHhcCCCEEE
Confidence 3456788999999999877777654 67778888876 89985
No 216
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=30.76 E-value=2e+02 Score=22.92 Aligned_cols=11 Identities=9% Similarity=-0.001 Sum_probs=8.0
Q ss_pred hcCEEEeCCCC
Q 028817 142 LVNGVLLTGGW 152 (203)
Q Consensus 142 ~VDGVLLTGG~ 152 (203)
.+|+|+-.-|.
T Consensus 107 ~id~li~nAg~ 117 (271)
T 4iin_A 107 GLSYLVNNAGV 117 (271)
T ss_dssp SCCEEEECCCC
T ss_pred CCCEEEECCCc
Confidence 67888877665
No 217
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=30.69 E-value=94 Score=25.77 Aligned_cols=60 Identities=17% Similarity=0.082 Sum_probs=33.6
Q ss_pred CEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHH----HHHHH-HhcCEEEeCCC
Q 028817 84 PVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEI----LFEKL-KLVNGVLLTGG 151 (203)
Q Consensus 84 PVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~----l~~~L-d~VDGVLLTGG 151 (203)
.+||+....... ..+..+.+..-+.+++.|-..++.....+.+. ++.++ ..+|||++.+.
T Consensus 67 ~~Igvi~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 131 (348)
T 3bil_A 67 NTIGVIVPSLIN--------HYFAAMVTEIQSTASKAGLATIITNSNEDATTMSGSLEFLTSHGVDGIICVPN 131 (348)
T ss_dssp -CEEEEESCSSS--------HHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSCEEECCC
T ss_pred CEEEEEeCCCCC--------cHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 478887643210 11222334444456778988887765544432 33333 46999999875
No 218
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=30.65 E-value=2e+02 Score=23.31 Aligned_cols=60 Identities=13% Similarity=-0.050 Sum_probs=32.5
Q ss_pred CCEEEEcCCC-CCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEe--ecC--CCHH----HHHHHH-HhcCEEEeCC
Q 028817 83 RPVIGILSHP-GDGASGRLNNSKNASYIAASYVKFVESAGARVIPL--IYN--EPEE----ILFEKL-KLVNGVLLTG 150 (203)
Q Consensus 83 rPVIGIta~~-~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~L--P~~--~~~e----~l~~~L-d~VDGVLLTG 150 (203)
..+||++... ... ..+..+.+...+++++.|...+++ ... .+.+ .++.++ ..+|||++++
T Consensus 43 ~~~Igvi~~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~ 112 (342)
T 1jx6_A 43 PIKISVVYPGQQVS--------DYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTL 112 (342)
T ss_dssp CEEEEEEECCCSSC--------CHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred ceEEEEEecCCccc--------HHHHHHHHHHHHHHHHcCCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 4689988653 221 122234444445667788766655 233 2332 233333 3699999954
No 219
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=30.56 E-value=28 Score=27.65 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=22.4
Q ss_pred HHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHH
Q 028817 135 ILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIY 172 (203)
Q Consensus 135 ~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~ 172 (203)
.+.+.+...|||+| ..|.|+....-.+|-++++
T Consensus 65 ~l~~~i~~AD~iv~-----~sP~y~~~~~~~lK~~iD~ 97 (193)
T 3svl_A 65 ALAEQIRQADGVVI-----VTPEYNYSVPGGLKNAIDW 97 (193)
T ss_dssp HHHHHHHHSSEEEE-----EECCBTTBCCHHHHHHHHH
T ss_pred HHHHHHHHCCEEEE-----EecccCCCCCHHHHHHHHH
Confidence 56788999999999 5688876544444444443
No 220
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=30.56 E-value=2.1e+02 Score=23.15 Aligned_cols=36 Identities=8% Similarity=0.173 Sum_probs=19.4
Q ss_pred HHHCCCeEEEeecCC-CHHHHHHHHH-------hcCEEEeCCCC
Q 028817 117 VESAGARVIPLIYNE-PEEILFEKLK-------LVNGVLLTGGW 152 (203)
Q Consensus 117 Ve~AGA~PV~LP~~~-~~e~l~~~Ld-------~VDGVLLTGG~ 152 (203)
++..|+....+..+. +.+.++++++ .+|.|+-.-|.
T Consensus 48 l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG~ 91 (264)
T 3tfo_A 48 IRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGRIDVLVNNAGV 91 (264)
T ss_dssp HHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 344454444444432 3445555544 57888877664
No 221
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=30.51 E-value=1.5e+02 Score=24.07 Aligned_cols=60 Identities=18% Similarity=0.133 Sum_probs=39.8
Q ss_pred HHHHHHHCCCeEEEeecCC----CHHHHHHHHHh--cCEEEeCCCCCCCCcChHHHHHHHHHHHHHH
Q 028817 113 YVKFVESAGARVIPLIYNE----PEEILFEKLKL--VNGVLLTGGWAKKGLYFQIVEKIFKHEAIYE 173 (203)
Q Consensus 113 YVkaVe~AGA~PV~LP~~~----~~e~l~~~Ld~--VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n 173 (203)
|.+.++..|+.++.+|.+. +.+.+++.++. ...|+++-......... ..+.|.+.+.+.+
T Consensus 136 ~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~ 201 (397)
T 3f9t_A 136 FEKGREMMDLEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTID-NIEELSKIAKENN 201 (397)
T ss_dssp HHHHHHHHTCEEEEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBC-CHHHHHHHHHHHT
T ss_pred HHHHHHHcCceeEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCCC-CHHHHHHHHHHhC
Confidence 6677888899999999753 56778887765 67777766543332222 2555777766643
No 222
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}
Probab=30.17 E-value=1.5e+02 Score=23.73 Aligned_cols=36 Identities=25% Similarity=0.180 Sum_probs=20.0
Q ss_pred HHHCCCeEEEeecCC-CHHHHHHHHH-------hcCEEEeCCCC
Q 028817 117 VESAGARVIPLIYNE-PEEILFEKLK-------LVNGVLLTGGW 152 (203)
Q Consensus 117 Ve~AGA~PV~LP~~~-~~e~l~~~Ld-------~VDGVLLTGG~ 152 (203)
++..|.....+..+. +.+.++++++ .+|.|+-.-|.
T Consensus 58 ~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg~ 101 (262)
T 3ksu_A 58 LEDQGAKVALYQSDLSNEEEVAKLFDFAEKEFGKVDIAINTVGK 101 (262)
T ss_dssp HHTTTCEEEEEECCCCSHHHHHHHHHHHHHHHCSEEEEEECCCC
T ss_pred HHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 344455555555443 4455555554 56777776664
No 223
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0
Probab=29.69 E-value=2.2e+02 Score=22.82 Aligned_cols=39 Identities=18% Similarity=0.307 Sum_probs=22.9
Q ss_pred HHHHHCCCeEEEeecCC-CHHHHHHHHH-------hcCEEEeCCCCC
Q 028817 115 KFVESAGARVIPLIYNE-PEEILFEKLK-------LVNGVLLTGGWA 153 (203)
Q Consensus 115 kaVe~AGA~PV~LP~~~-~~e~l~~~Ld-------~VDGVLLTGG~D 153 (203)
+.++..|.....+..+. +.+.+++.++ .+|.|+-.-|..
T Consensus 66 ~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lvnnAg~~ 112 (277)
T 3tsc_A 66 RLVEAANRRIVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGVA 112 (277)
T ss_dssp HHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 34445555555555443 4455555555 489988877753
No 224
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=29.60 E-value=1.2e+02 Score=24.90 Aligned_cols=60 Identities=10% Similarity=0.048 Sum_probs=35.7
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHH-----HhcCEEEeCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKL-----KLVNGVLLTGG 151 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~L-----d~VDGVLLTGG 151 (203)
..+||+....... ..+..+.+..-+.+++.|-..++..... .+.-.+++ ..+|||++.+.
T Consensus 64 ~~~Igvi~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~vdGiIi~~~ 128 (333)
T 3jvd_A 64 SALVGVIVPDLSN--------EYYSESLQTIQQDLKAAGYQMLVAEANS-VQAQDVVMESLISIQAAGIIHVPV 128 (333)
T ss_dssp CCEEEEEESCSSS--------HHHHHHHHHHHHHHHHHTCEEEEEECCS-HHHHHHHHHHHHHHTCSEEEECCC
T ss_pred CCEEEEEeCCCcC--------hHHHHHHHHHHHHHHHCCCEEEEECCCC-hHHHHHHHHHHHhCCCCEEEEcch
Confidence 4579987653221 1122344444456677898888887654 43222222 57999999875
No 225
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}
Probab=29.54 E-value=1.7e+02 Score=25.05 Aligned_cols=39 Identities=13% Similarity=0.236 Sum_probs=25.0
Q ss_pred HHHHHHCCCeEEEeecCC-CHHHHHHHHH-------hcCEEEeCCCC
Q 028817 114 VKFVESAGARVIPLIYNE-PEEILFEKLK-------LVNGVLLTGGW 152 (203)
Q Consensus 114 VkaVe~AGA~PV~LP~~~-~~e~l~~~Ld-------~VDGVLLTGG~ 152 (203)
.+.++..|+....+..+. +.+.+++.++ .+|.|+-.-|.
T Consensus 93 ~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iDilVnnAG~ 139 (346)
T 3kvo_A 93 AEEIEAVGGKALPCIVDVRDEQQISAAVEKAIKKFGGIDILVNNASA 139 (346)
T ss_dssp HHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 344555666666665543 4556666665 78999988774
No 226
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}
Probab=29.53 E-value=2e+02 Score=22.75 Aligned_cols=38 Identities=11% Similarity=0.128 Sum_probs=23.7
Q ss_pred HHHHHCCCeEEEeecCC-CHHHHHHHHH-------hcCEEEeCCCC
Q 028817 115 KFVESAGARVIPLIYNE-PEEILFEKLK-------LVNGVLLTGGW 152 (203)
Q Consensus 115 kaVe~AGA~PV~LP~~~-~~e~l~~~Ld-------~VDGVLLTGG~ 152 (203)
+.++..|.....+..+. +.+.+++.++ .+|.|+-.-|.
T Consensus 46 ~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nAg~ 91 (258)
T 3a28_C 46 KLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKLGGFDVLVNNAGI 91 (258)
T ss_dssp HHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHTCCCEEEECCCC
T ss_pred HHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 34444566665555543 4556666665 68999987775
No 227
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=29.48 E-value=1.5e+02 Score=23.17 Aligned_cols=38 Identities=18% Similarity=0.126 Sum_probs=23.2
Q ss_pred HCCCeEEEeecCCCHHH----HHHHHH--hcCEEEeCCCCCCCC
Q 028817 119 SAGARVIPLIYNEPEEI----LFEKLK--LVNGVLLTGGWAKKG 156 (203)
Q Consensus 119 ~AGA~PV~LP~~~~~e~----l~~~Ld--~VDGVLLTGG~DVdP 156 (203)
+.|+.+......++.+. +.+.++ .+|-||.|||.-+.+
T Consensus 39 ~~G~~v~~~iv~Dd~~~I~~~l~~~~~~~~~DlVittGG~g~g~ 82 (178)
T 2pbq_A 39 ITPFEVEYRVIPDERDLIEKTLIELADEKGCSLILTTGGTGPAP 82 (178)
T ss_dssp CSCCEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSST
T ss_pred hCCCEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCC
Confidence 68887632222234443 444555 689999999975544
No 228
>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi}
Probab=29.39 E-value=98 Score=26.08 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=31.6
Q ss_pred hhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHh-cCEEEe
Q 028817 107 SYIAASYVKFVESAGARVIPLIYNEPEEILFEKLKL-VNGVLL 148 (203)
Q Consensus 107 syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~-VDGVLL 148 (203)
..+....|+.+.++|-.+.+.-. .+.++++.+++. ||||+-
T Consensus 254 ~~~~~~~v~~~~~~Gl~V~~WTV-n~~~~~~~l~~~GVDgIiT 295 (313)
T 3l12_A 254 LDVTPELVAEAHDLGLIVLTWTV-NEPEDIRRMATTGVDGIVT 295 (313)
T ss_dssp GGCCHHHHHHHHHTTCEEEEBCC-CSHHHHHHHHHHTCSEEEE
T ss_pred hcCCHHHHHHHHHCCCEEEEEcC-CCHHHHHHHHHcCCCEEEe
Confidence 35668889999999887777765 467788888885 999873
No 229
>1to6_A Glycerate kinase; glycerate metabolism, structural genomics T831, PSI, protein structure initiative; 2.50A {Neisseria meningitidis serogroup A} SCOP: c.141.1.1
Probab=29.01 E-value=15 Score=33.42 Aligned_cols=47 Identities=17% Similarity=0.209 Sum_probs=30.0
Q ss_pred HHHHHHHhcCEEEeCC-CCCCCCcCh-HHHHHHHHHHHHHHhCCCCcceEeeCCc
Q 028817 135 ILFEKLKLVNGVLLTG-GWAKKGLYF-QIVEKIFKHEAIYERKKQSLVHGITGDV 187 (203)
Q Consensus 135 ~l~~~Ld~VDGVLLTG-G~DVdP~yY-~~~~~I~~~AL~~n~~g~~PV~Gic~~~ 187 (203)
.+++.++..| |++|| |.-..-..+ ++.--+-+.|.+ +.||..|||.+
T Consensus 271 ~l~~~l~~AD-LVITGEG~~D~QT~~GK~p~gVa~~A~~-----~~PviaiaG~~ 319 (371)
T 1to6_A 271 DFDKKVSDVD-LVIVGEGRLDRQSLAGKAPIGVAKRTPV-----GVPVVAICGSL 319 (371)
T ss_dssp THHHHTTTCS-EEEECCSEECSTTTTTCHHHHHHTTSCT-----TCCEEEEESEE
T ss_pred CHHHHhcCCC-EEEECCCCCCCCCCCCcHHHHHHHHHhc-----CCCEEEEeCCC
Confidence 5678888998 77888 542233444 344444444433 46999999965
No 230
>1wu2_A MOEA protein, molybdopterin biosynthesis MOEA protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1xi8_A
Probab=28.93 E-value=38 Score=30.48 Aligned_cols=44 Identities=25% Similarity=0.111 Sum_probs=25.7
Q ss_pred HHHHH-HHHHCCCeEEEeecCC-CHH----HHHHHHHhcCEEEeCCCCCC
Q 028817 111 ASYVK-FVESAGARVIPLIYNE-PEE----ILFEKLKLVNGVLLTGGWAK 154 (203)
Q Consensus 111 ~sYVk-aVe~AGA~PV~LP~~~-~~e----~l~~~Ld~VDGVLLTGG~DV 154 (203)
..++. .+++.|+.++.+.... +.+ .+++.++.+|-||.|||..+
T Consensus 213 ~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlvittGG~s~ 262 (396)
T 1wu2_A 213 SIMLQGLVEKFFGEPILYGVLPDDESIIKETLEKAKNECDIVLITGGSAF 262 (396)
T ss_dssp HHHHHHHHHHTTCEEEEEEEECSCHHHHTTHHHHHHHCSEEEECC-----
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHhhCCCEEEEeCCCCC
Confidence 34444 3677999887655433 333 45556677999999999754
No 231
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Probab=28.88 E-value=2.1e+02 Score=22.39 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=20.6
Q ss_pred HHHCCCeEEEeecCC-CHHHHHHHHH-------hcCEEEeCCCC
Q 028817 117 VESAGARVIPLIYNE-PEEILFEKLK-------LVNGVLLTGGW 152 (203)
Q Consensus 117 Ve~AGA~PV~LP~~~-~~e~l~~~Ld-------~VDGVLLTGG~ 152 (203)
++..|.....+..+. +.+.+++.++ .+|.|+-.-|.
T Consensus 49 ~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv~nAg~ 92 (246)
T 2uvd_A 49 IKKLGSDAIAVRADVANAEDVTNMVKQTVDVFGQVDILVNNAGV 92 (246)
T ss_dssp HHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 344454444444432 4455666665 68888887764
No 232
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=28.73 E-value=1.1e+02 Score=24.22 Aligned_cols=43 Identities=9% Similarity=-0.017 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHCCCeEEEee--cCCCHHH----HHHHH-HhcCEEEeCCC
Q 028817 109 IAASYVKFVESAGARVIPLI--YNEPEEI----LFEKL-KLVNGVLLTGG 151 (203)
Q Consensus 109 I~~sYVkaVe~AGA~PV~LP--~~~~~e~----l~~~L-d~VDGVLLTGG 151 (203)
+.+..-++.++.|-..++.. ...+.+. ++.++ .++|||++.+.
T Consensus 19 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~ 68 (288)
T 1gud_A 19 MKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPL 68 (288)
T ss_dssp HHHHHHHHHHHHTCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCS
T ss_pred HHHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 33444445667788777765 4334332 23333 35999999764
No 233
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=28.54 E-value=1.1e+02 Score=23.46 Aligned_cols=45 Identities=16% Similarity=0.268 Sum_probs=29.0
Q ss_pred hHHHHH-HHHHCCCeEEEeecCC-CHHHHHHHH------HhcCEEEeCCCCCC
Q 028817 110 AASYVK-FVESAGARVIPLIYNE-PEEILFEKL------KLVNGVLLTGGWAK 154 (203)
Q Consensus 110 ~~sYVk-aVe~AGA~PV~LP~~~-~~e~l~~~L------d~VDGVLLTGG~DV 154 (203)
...|+. .+++.|..++-..... +.+.+.+.+ +.+|-|+.|||--+
T Consensus 41 ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittGG~g~ 93 (178)
T 3iwt_A 41 SGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTGY 93 (178)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCSS
T ss_pred hHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecCCccc
Confidence 344555 4788999886555433 445555443 34799999999644
No 234
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=28.34 E-value=96 Score=25.42 Aligned_cols=61 Identities=15% Similarity=0.045 Sum_probs=37.2
Q ss_pred HHHHHHHHCCCeEEEeecC--------CCHHHHHHHHHhcCEEEeCCCCCCCCcCh--HHHHHHHHHHHHH
Q 028817 112 SYVKFVESAGARVIPLIYN--------EPEEILFEKLKLVNGVLLTGGWAKKGLYF--QIVEKIFKHEAIY 172 (203)
Q Consensus 112 sYVkaVe~AGA~PV~LP~~--------~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY--~~~~~I~~~AL~~ 172 (203)
.|...++..|+.++.+|.+ .+.+.+++.++....|+++--..-....+ +..+.|.+.+.+.
T Consensus 126 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~ 196 (391)
T 4dq6_A 126 PFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKDVKLFILCNPHNPVGRVWTKDELKKLGDICLKH 196 (391)
T ss_dssp HHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhcCCEEEEECCCCCCCcCcCHHHHHHHHHHHHHc
Confidence 3667788899999999876 25667777766655666643322222222 3355566666543
No 235
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=28.27 E-value=1.7e+02 Score=23.75 Aligned_cols=61 Identities=5% Similarity=-0.099 Sum_probs=34.2
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEe-ecCCCHH----HHHHHH-HhcCEEEeCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPL-IYNEPEE----ILFEKL-KLVNGVLLTGG 151 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~L-P~~~~~e----~l~~~L-d~VDGVLLTGG 151 (203)
...||++...... ..+..+.+..-+++++.|...++. +...+.+ .++.++ +.+|||++.+.
T Consensus 3 ~~~Igvi~~~~~~--------~~~~~~~~g~~~~~~~~g~~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~ 69 (316)
T 1tjy_A 3 AERIAFIPKLVGV--------GFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAV 69 (316)
T ss_dssp CCEEEEECSSSSS--------HHHHHHHHHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCEEEEEeCCCCC--------hHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3578987653221 122234444445667788877765 4444433 234433 46999998753
No 236
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}
Probab=28.07 E-value=2.2e+02 Score=22.54 Aligned_cols=33 Identities=24% Similarity=0.208 Sum_probs=17.0
Q ss_pred CCCeEEEeecCC-CHHHHHHHHH-------hcCEEEeCCCC
Q 028817 120 AGARVIPLIYNE-PEEILFEKLK-------LVNGVLLTGGW 152 (203)
Q Consensus 120 AGA~PV~LP~~~-~~e~l~~~Ld-------~VDGVLLTGG~ 152 (203)
.|.....+..+. +.+.+++.++ .+|.|+-.-|.
T Consensus 59 ~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~nAg~ 99 (256)
T 3gaf_A 59 AGGKAIGLECNVTDEQHREAVIKAALDQFGKITVLVNNAGG 99 (256)
T ss_dssp TTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred cCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 344443344332 3444555554 67887776664
No 237
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=27.57 E-value=2e+02 Score=25.57 Aligned_cols=75 Identities=8% Similarity=0.126 Sum_probs=46.6
Q ss_pred hhhHHHHHHHHHCCCeEEEeec-CC---CHHHHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCC-cceE
Q 028817 108 YIAASYVKFVESAGARVIPLIY-NE---PEEILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQS-LVHG 182 (203)
Q Consensus 108 yI~~sYVkaVe~AGA~PV~LP~-~~---~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~-PV~G 182 (203)
.+++.-.+.+++.|..+++.-. +. +.+++.+-+.+.|||+| |........+-....++...+..+.+|.. =++|
T Consensus 281 ~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~~~~~ivl-GspT~~~~~~p~~~~~l~~l~~~~~~~K~~~~FG 359 (410)
T 4dik_A 281 NVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIF-GVSTYEAEIHPLMRFTLLEIIDKANYEKPVLVFG 359 (410)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEE-EECCTTSSSCHHHHHHHHHHHHHCCCCCEEEEEE
T ss_pred HHHHHHHHHHHhcCCceEEEEeccCCCCCHHHHHHHHHhCCeEEE-EeCCcCCcCCHHHHHHHHHHHhcccCCCEEEEEE
Confidence 4556666789999988876532 22 34555556668999999 44445555555667777766666555543 3444
Q ss_pred e
Q 028817 183 I 183 (203)
Q Consensus 183 i 183 (203)
-
T Consensus 360 S 360 (410)
T 4dik_A 360 V 360 (410)
T ss_dssp E
T ss_pred C
Confidence 3
No 238
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}
Probab=27.38 E-value=1.9e+02 Score=23.94 Aligned_cols=35 Identities=17% Similarity=0.143 Sum_probs=19.8
Q ss_pred HHCCCeEEEeecCC-CHHHHHHHHH-------hcCEEEeCCCC
Q 028817 118 ESAGARVIPLIYNE-PEEILFEKLK-------LVNGVLLTGGW 152 (203)
Q Consensus 118 e~AGA~PV~LP~~~-~~e~l~~~Ld-------~VDGVLLTGG~ 152 (203)
+..|.....+..+. +.+.++++++ .+|.|+-.-|.
T Consensus 103 ~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAg~ 145 (317)
T 3oec_A 103 EEQGRRIIARQADVRDLASLQAVVDEALAEFGHIDILVSNVGI 145 (317)
T ss_dssp HHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 33444444444432 4455666665 67998887764
No 239
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0
Probab=27.37 E-value=2e+02 Score=23.11 Aligned_cols=37 Identities=19% Similarity=0.313 Sum_probs=22.0
Q ss_pred HHHHCCCeEEEeecCC-CHHHHHHHHH-------hcCEEEeCCCC
Q 028817 116 FVESAGARVIPLIYNE-PEEILFEKLK-------LVNGVLLTGGW 152 (203)
Q Consensus 116 aVe~AGA~PV~LP~~~-~~e~l~~~Ld-------~VDGVLLTGG~ 152 (203)
.++..|.....+..+. +.+.+++.++ .+|.|+-.-|.
T Consensus 71 ~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg~ 115 (280)
T 3pgx_A 71 LVEDQGRKALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGV 115 (280)
T ss_dssp HHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_pred HHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 3444455555555443 4555666665 68988887775
No 240
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=27.29 E-value=1e+02 Score=25.42 Aligned_cols=73 Identities=18% Similarity=0.163 Sum_probs=44.8
Q ss_pred hHHHHH---HHHHCCCeE-EEeecCCCHHHHHHHHH--hcCEEEeC----C--CCCCCCcChHHHHHHHHHHHHHHhCCC
Q 028817 110 AASYVK---FVESAGARV-IPLIYNEPEEILFEKLK--LVNGVLLT----G--GWAKKGLYFQIVEKIFKHEAIYERKKQ 177 (203)
Q Consensus 110 ~~sYVk---aVe~AGA~P-V~LP~~~~~e~l~~~Ld--~VDGVLLT----G--G~DVdP~yY~~~~~I~~~AL~~n~~g~ 177 (203)
....++ .+++.|.++ |.+-...+.+.++++++ .+|-|++= | |+..-|.-.+..+.+-++. ++
T Consensus 100 ~~~~i~~~~~i~~~G~k~gvalnp~tp~~~~~~~l~~g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~------~~ 173 (227)
T 1tqx_A 100 TERCIQLAKEIRDNNLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKY------KN 173 (227)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEECTTSCGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHC------TT
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHhhcCCcCEEEEeeeccCCCCcccchHHHHHHHHHHHhc------cC
Confidence 346678 888899888 44544446778899999 89999553 3 4445555555555443332 13
Q ss_pred CcceEeeCCccc
Q 028817 178 SLVHGITGDVVQ 189 (203)
Q Consensus 178 ~PV~Gic~~~~~ 189 (203)
.+| .+-||+=.
T Consensus 174 ~~I-~VdGGI~~ 184 (227)
T 1tqx_A 174 LNI-QVDGGLNI 184 (227)
T ss_dssp CEE-EEESSCCH
T ss_pred CeE-EEECCCCH
Confidence 454 34566533
No 241
>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*
Probab=27.23 E-value=2.3e+02 Score=22.41 Aligned_cols=21 Identities=29% Similarity=0.222 Sum_probs=12.5
Q ss_pred CHHHHHHHHH-------hcCEEEeCCCC
Q 028817 132 PEEILFEKLK-------LVNGVLLTGGW 152 (203)
Q Consensus 132 ~~e~l~~~Ld-------~VDGVLLTGG~ 152 (203)
+.+.+++.++ .+|+|+-.-|.
T Consensus 87 ~~~~~~~~~~~~~~~~g~id~li~nAg~ 114 (267)
T 4iiu_A 87 NREQCREVLEHEIAQHGAWYGVVSNAGI 114 (267)
T ss_dssp CHHHHHHHHHHHHHHHCCCSEEEECCCC
T ss_pred CHHHHHHHHHHHHHHhCCccEEEECCCC
Confidence 3444555554 67777777664
No 242
>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria}
Probab=27.14 E-value=1.2e+02 Score=24.68 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=30.7
Q ss_pred hhhhHHHHHHHHHCCCeEEEeec---CCCHHHHHHHHH-hcCEEE
Q 028817 107 SYIAASYVKFVESAGARVIPLIY---NEPEEILFEKLK-LVNGVL 147 (203)
Q Consensus 107 syI~~sYVkaVe~AGA~PV~LP~---~~~~e~l~~~Ld-~VDGVL 147 (203)
..+...+|+.+.++|-.+.+.-. +.+.+.+..+++ .||||+
T Consensus 198 ~~~~~~~v~~~~~~G~~v~~wTv~~~~n~~~~~~~l~~~GvdgI~ 242 (258)
T 2o55_A 198 HYLTKEQVCTAHEKGLSVTVWMPWIFDDSEEDWKKCLELQVDLIC 242 (258)
T ss_dssp GGCCHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHTCSEEE
T ss_pred hhcCHHHHHHHHHCCCEEEEeeCCCCCCCHHHHHHHHHcCCCEEE
Confidence 34668889999999987777665 036777888888 499976
No 243
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2
Probab=27.12 E-value=2e+02 Score=21.96 Aligned_cols=45 Identities=18% Similarity=0.140 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHHCCCeEEEeecC-------------CCHHHHHHHHH------hcCEEEeCCCC
Q 028817 108 YIAASYVKFVESAGARVIPLIYN-------------EPEEILFEKLK------LVNGVLLTGGW 152 (203)
Q Consensus 108 yI~~sYVkaVe~AGA~PV~LP~~-------------~~~e~l~~~Ld------~VDGVLLTGG~ 152 (203)
.+....++.+.+.|+.++.+--. .+.+.+++.++ .+|.|+..-|.
T Consensus 13 giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~li~~ag~ 76 (242)
T 1uay_A 13 GLGRAAALALKARGYRVVVLDLRREGEDLIYVEGDVTREEDVRRAVARAQEEAPLFAVVSAAGV 76 (242)
T ss_dssp HHHHHHHHHHHHHTCEEEEEESSCCSSSSEEEECCTTCHHHHHHHHHHHHHHSCEEEEEECCCC
T ss_pred hHHHHHHHHHHHCCCEEEEEccCccccceEEEeCCCCCHHHHHHHHHHHHhhCCceEEEEcccc
Confidence 57888888888889988765321 24567777777 78999988775
No 244
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=26.92 E-value=1.6e+02 Score=25.63 Aligned_cols=47 Identities=17% Similarity=0.117 Sum_probs=25.1
Q ss_pred HHHHHHHH-hcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeC
Q 028817 134 EILFEKLK-LVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITG 185 (203)
Q Consensus 134 e~l~~~Ld-~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~ 185 (203)
+.++.+++ .+|-||-+||..-...-.+..+.+.+ ..+++.+|...+|
T Consensus 170 ~Ale~Li~lGvdrILTSG~~~~a~~Gl~~Lk~Lv~-----~a~~rI~ImaGGG 217 (287)
T 3iwp_A 170 AALETLLTLGFERVLTSGCDSSALEGLPLIKRLIE-----QAKGRIVVMPGGG 217 (287)
T ss_dssp HHHHHHHHHTCSEEEECTTSSSTTTTHHHHHHHHH-----HHTTSSEEEECTT
T ss_pred HHHHHHHHcCCCEEECCCCCCChHHhHHHHHHHHH-----HhCCCCEEEECCC
Confidence 45566666 78888888885322322233333322 2344556666544
No 245
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1
Probab=26.84 E-value=54 Score=28.46 Aligned_cols=44 Identities=16% Similarity=0.124 Sum_probs=31.6
Q ss_pred hcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCcc
Q 028817 142 LVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDVV 188 (203)
Q Consensus 142 ~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~~ 188 (203)
.++ ++|+||.. -.-++++..+++.+++.+..+...|.|+=||++
T Consensus 53 ~~~-~~~~~ge~--~~~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv 96 (348)
T 1ujn_A 53 RHL-LGLPGGEA--AKSLEVYGKVLSWLAEKGLPRNATLLVVGGGTL 96 (348)
T ss_dssp CCE-EEECCSGG--GSSHHHHHHHHHHHHHHTCCTTCEEEEEESHHH
T ss_pred CeE-EEECCCCC--CCCHHHHHHHHHHHHHcCCCCCCEEEEECCcHH
Confidence 345 67777762 234578888888888877666668888888875
No 246
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=26.71 E-value=2.6e+02 Score=22.87 Aligned_cols=37 Identities=19% Similarity=0.022 Sum_probs=24.6
Q ss_pred CHHHHHHHHH--hcCEEEeCCCCCCCCcChHHHHHHHHHHHHH
Q 028817 132 PEEILFEKLK--LVNGVLLTGGWAKKGLYFQIVEKIFKHEAIY 172 (203)
Q Consensus 132 ~~e~l~~~Ld--~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~ 172 (203)
+.+.+.+.++ .+|.|+...|.. .....+.+.+.+.+.
T Consensus 71 d~~~l~~~~~~~~~d~Vi~~a~~~----n~~~~~~l~~aa~~~ 109 (346)
T 3i6i_A 71 EQEAMEKILKEHEIDIVVSTVGGE----SILDQIALVKAMKAV 109 (346)
T ss_dssp CHHHHHHHHHHTTCCEEEECCCGG----GGGGHHHHHHHHHHH
T ss_pred CHHHHHHHHhhCCCCEEEECCchh----hHHHHHHHHHHHHHc
Confidence 5677888999 999999988752 222334555555543
No 247
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2
Probab=26.65 E-value=2e+02 Score=22.51 Aligned_cols=36 Identities=11% Similarity=0.135 Sum_probs=20.1
Q ss_pred HHHCCCeEEEeecCC-CHHHHHHHHH-------hcCEEEeCCCC
Q 028817 117 VESAGARVIPLIYNE-PEEILFEKLK-------LVNGVLLTGGW 152 (203)
Q Consensus 117 Ve~AGA~PV~LP~~~-~~e~l~~~Ld-------~VDGVLLTGG~ 152 (203)
++..|.....+..+. +.+.+++.++ .+|+|+-.-|.
T Consensus 66 l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~Ag~ 109 (274)
T 1ja9_A 66 LKKLGAQGVAIQADISKPSEVVALFDKAVSHFGGLDFVMSNSGM 109 (274)
T ss_dssp HHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCEEEEECCCCC
T ss_pred HHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 333444444444432 3455666665 67888877764
No 248
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}
Probab=26.48 E-value=2.5e+02 Score=22.45 Aligned_cols=46 Identities=15% Similarity=0.132 Sum_probs=34.1
Q ss_pred hhhHHHHHHHHHCCCeEEEeecC----------------CCHHHHHHHHH-------hcCEEEeCCCCC
Q 028817 108 YIAASYVKFVESAGARVIPLIYN----------------EPEEILFEKLK-------LVNGVLLTGGWA 153 (203)
Q Consensus 108 yI~~sYVkaVe~AGA~PV~LP~~----------------~~~e~l~~~Ld-------~VDGVLLTGG~D 153 (203)
.|....++.+.+.|+.++++--+ .+.+.+++.++ .+|.|+-.-|..
T Consensus 39 gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~ 107 (260)
T 3un1_A 39 GIGAGLVRAYRDRNYRVVATSRSIKPSADPDIHTVAGDISKPETADRIVREGIERFGRIDSLVNNAGVF 107 (260)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESSCCCCSSTTEEEEESCTTSHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCChhhcccCceEEEEccCCCHHHHHHHHHHHHHHCCCCCEEEECCCCC
Confidence 58888889999999998876421 24556666666 789999887753
No 249
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=26.44 E-value=64 Score=25.77 Aligned_cols=61 Identities=8% Similarity=0.061 Sum_probs=36.0
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHH---HHHHHH-HhcCEEEeCCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEE---ILFEKL-KLVNGVLLTGGW 152 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e---~l~~~L-d~VDGVLLTGG~ 152 (203)
..+||+.. .... ..+..+.+..-+.+++.|-..++.....+.+ .++.++ ..+|||++.+..
T Consensus 12 ~~~Igvi~-~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 76 (289)
T 3k9c_A 12 SRLLGVVF-ELQQ--------PFHGDLVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMRERCEAAILLGTR 76 (289)
T ss_dssp -CEEEEEE-ETTC--------HHHHHHHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTTTTEEEEEEETCC
T ss_pred CCEEEEEE-ecCC--------chHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHhCCCCEEEEECCC
Confidence 45899887 3221 1223344555556777898888887654322 223322 469999998754
No 250
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=26.38 E-value=1.5e+02 Score=23.64 Aligned_cols=59 Identities=14% Similarity=-0.007 Sum_probs=32.8
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCC---eEEEe--ecCCCHHHHHHHHH-----hcCEEEeCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGA---RVIPL--IYNEPEEILFEKLK-----LVNGVLLTG 150 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA---~PV~L--P~~~~~e~l~~~Ld-----~VDGVLLTG 150 (203)
...|||.....+ ....-+.+..-+.+++.|- .+.++ ....+.+...++++ ++|||++.|
T Consensus 2 ~~~Igvi~~~~~---------p~~~~i~~gi~~~l~~~gy~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~ 70 (295)
T 3lft_A 2 NAKIGVLQFVSH---------PSLDLIYKGIQDGLAEEGYKDDQVKIDFMNSEGDQSKVATMSKQLVANGNDLVVGIA 70 (295)
T ss_dssp CEEEEEEECSCC---------HHHHHHHHHHHHHHHHTTCCGGGEEEEEEECTTCHHHHHHHHHHHTTSSCSEEEEES
T ss_pred ceEEEEEEccCC---------hhHHHHHHHHHHHHHHcCCCCCceEEEEecCCCCHHHHHHHHHHHHhcCCCEEEECC
Confidence 357998832111 1223355666667777887 54333 33334444444433 589999986
No 251
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=26.32 E-value=2.4e+02 Score=22.19 Aligned_cols=20 Identities=20% Similarity=0.056 Sum_probs=15.8
Q ss_pred hhhHHHHHHHHHCCCeEEEe
Q 028817 108 YIAASYVKFVESAGARVIPL 127 (203)
Q Consensus 108 yI~~sYVkaVe~AGA~PV~L 127 (203)
.|.+..++.+.+.|+.++++
T Consensus 13 gIG~~ia~~l~~~G~~V~~~ 32 (247)
T 3dii_A 13 GIGKQICLDFLEAGDKVCFI 32 (247)
T ss_dssp HHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEE
Confidence 57788888888888887765
No 252
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=26.24 E-value=2.5e+02 Score=22.36 Aligned_cols=53 Identities=17% Similarity=0.063 Sum_probs=33.4
Q ss_pred HCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHHHHHHH
Q 028817 119 SAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIY 172 (203)
Q Consensus 119 ~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~ 172 (203)
..|...+..-. .+.+.+.+.++.+|.|+...|...........+.+.+.+.+.
T Consensus 54 ~~~~~~~~~D~-~d~~~l~~~~~~~d~vi~~a~~~~~~~~~~~~~~l~~aa~~~ 106 (313)
T 1qyd_A 54 QLGAKLIEASL-DDHQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEAIKEA 106 (313)
T ss_dssp TTTCEEECCCS-SCHHHHHHHHTTCSEEEECCCCSSSSTTTTTHHHHHHHHHHS
T ss_pred hCCeEEEeCCC-CCHHHHHHHHhCCCEEEECCccccchhhHHHHHHHHHHHHhc
Confidence 34555444432 356788899999999998877532222344456777777653
No 253
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=25.84 E-value=2.2e+02 Score=23.48 Aligned_cols=58 Identities=17% Similarity=0.079 Sum_probs=36.8
Q ss_pred HHHHHHHHCCCeEEEeecC-------CCHHHHHHHHH--hcCEEEeCC-----CCCCCCcChHHHHHHHHHHHHH
Q 028817 112 SYVKFVESAGARVIPLIYN-------EPEEILFEKLK--LVNGVLLTG-----GWAKKGLYFQIVEKIFKHEAIY 172 (203)
Q Consensus 112 sYVkaVe~AGA~PV~LP~~-------~~~e~l~~~Ld--~VDGVLLTG-----G~DVdP~yY~~~~~I~~~AL~~ 172 (203)
.|.+.++..|+.++.+|.. .+.+.+++.++ ....|+++- |.-.+. +..+.|.+.+.+.
T Consensus 123 ~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~---~~l~~l~~~~~~~ 194 (390)
T 1d2f_A 123 AFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTC---DELEIMADLCERH 194 (390)
T ss_dssp HHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCT---THHHHHHHHHHHT
T ss_pred HHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEeCCCCCCCcCcCH---HHHHHHHHHHHHc
Confidence 4667788899999998863 35677777775 466777752 322222 3455566666553
No 254
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=25.71 E-value=1.9e+02 Score=24.44 Aligned_cols=62 Identities=15% Similarity=0.036 Sum_probs=40.9
Q ss_pred HHHHHHHHCCCeEEEeecC-------CCHHHHHHHHH--hcCEEEeCCCCCCCCcCh--HHHHHHHHHHHHHH
Q 028817 112 SYVKFVESAGARVIPLIYN-------EPEEILFEKLK--LVNGVLLTGGWAKKGLYF--QIVEKIFKHEAIYE 173 (203)
Q Consensus 112 sYVkaVe~AGA~PV~LP~~-------~~~e~l~~~Ld--~VDGVLLTGG~DVdP~yY--~~~~~I~~~AL~~n 173 (203)
.|...++..|+.++.+|.. .+.+.+++.++ ....|++.--..-....+ +..+.|.+.+.+.+
T Consensus 155 ~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~ 227 (421)
T 3l8a_A 155 PFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHG 227 (421)
T ss_dssp HHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcC
Confidence 4667888899999999864 36788888886 677777754333223222 34566666666544
No 255
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=25.55 E-value=1.8e+02 Score=22.85 Aligned_cols=61 Identities=5% Similarity=-0.032 Sum_probs=32.9
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEee-cCCCHHH----HHHHH-HhcCEEEeCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLI-YNEPEEI----LFEKL-KLVNGVLLTGG 151 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP-~~~~~e~----l~~~L-d~VDGVLLTGG 151 (203)
..+||+....... .....+.+..-+++++.|...+++- ...+.+. ++.++ +.+|||++.+.
T Consensus 4 ~~~Ig~i~~~~~~--------~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 70 (303)
T 3d02_A 4 EKTVVNISKVDGM--------PWFNRMGEGVVQAGKEFNLNASQVGPSSTDAPQQVKIIEDLIARKVDAITIVPN 70 (303)
T ss_dssp CEEEEEECSCSSC--------HHHHHHHHHHHHHHHHTTEEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred ceEEEEEeccCCC--------hHHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 3578987653211 1122334444456677887776543 3334332 33333 46899999764
No 256
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*
Probab=25.38 E-value=2.4e+02 Score=21.94 Aligned_cols=36 Identities=11% Similarity=0.209 Sum_probs=21.3
Q ss_pred HHHCCCeEEEeecCC-CHHHHHHHHH-------hcCEEEeCCCC
Q 028817 117 VESAGARVIPLIYNE-PEEILFEKLK-------LVNGVLLTGGW 152 (203)
Q Consensus 117 Ve~AGA~PV~LP~~~-~~e~l~~~Ld-------~VDGVLLTGG~ 152 (203)
++..|.....+..+. +.+.+++.++ .+|.|+..-|.
T Consensus 52 l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~~Ag~ 95 (261)
T 1gee_A 52 IKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGL 95 (261)
T ss_dssp HHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 344455544444432 4455666665 68999988775
No 257
>3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1, glycerophosphoryl diester phosphodiesterase, ST genomics; HET: MSE CIT GOL; 1.50A {Cytophaga hutchinsonii atcc 33406}
Probab=25.34 E-value=93 Score=25.37 Aligned_cols=41 Identities=24% Similarity=0.443 Sum_probs=31.0
Q ss_pred chhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHh-cCEEE
Q 028817 106 ASYIAASYVKFVESAGARVIPLIYNEPEEILFEKLKL-VNGVL 147 (203)
Q Consensus 106 ~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~-VDGVL 147 (203)
...+...+|+.+.++|-.+.+.-.+ +.+++..+++. ||||+
T Consensus 221 ~~~~~~~~v~~~~~~Gl~v~~wTvn-~~~~~~~l~~~GvdgIi 262 (272)
T 3ch0_A 221 VTLVSKKDIDAAHKLGMRVIPWTVN-TKEEIETLISLGVDGII 262 (272)
T ss_dssp GGGCCHHHHHHHHHTTCEECCBCCC-SHHHHHHHHHHTCSEEE
T ss_pred hhhcCHHHHHHHHHcCCEEEEeccC-CHHHHHHHHHcCCCEEE
Confidence 3456788999999999877666544 67778888885 99986
No 258
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A
Probab=25.32 E-value=2.6e+02 Score=22.29 Aligned_cols=11 Identities=9% Similarity=0.072 Sum_probs=6.9
Q ss_pred hcCEEEeCCCC
Q 028817 142 LVNGVLLTGGW 152 (203)
Q Consensus 142 ~VDGVLLTGG~ 152 (203)
.+|.|+-.-|.
T Consensus 96 ~id~lvnnAg~ 106 (270)
T 3is3_A 96 HLDIAVSNSGV 106 (270)
T ss_dssp CCCEEECCCCC
T ss_pred CCCEEEECCCC
Confidence 46777766554
No 259
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=25.28 E-value=1.4e+02 Score=24.28 Aligned_cols=59 Identities=25% Similarity=0.245 Sum_probs=38.7
Q ss_pred HHHHHHHHCCCeEEEeecC----CCHHHHHHHH---HhcCEEEeCCCCCCCCcChHHHHHHHHHHHH
Q 028817 112 SYVKFVESAGARVIPLIYN----EPEEILFEKL---KLVNGVLLTGGWAKKGLYFQIVEKIFKHEAI 171 (203)
Q Consensus 112 sYVkaVe~AGA~PV~LP~~----~~~e~l~~~L---d~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~ 171 (203)
.|.+.++..|+.++.++.+ .+.+.+++.+ ++...|+++.........+ ..+.|.+.+.+
T Consensus 109 ~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~ 174 (386)
T 2dr1_A 109 RYKEVVESNGRKAVVLEYEPGKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLN-PLPELAKVAKE 174 (386)
T ss_dssp HHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEEC-CHHHHHHHHHH
T ss_pred HHHHHHHHhCCceEEEecCCCCCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhC-CHHHHHHHHHH
Confidence 4777888899999999874 3567788887 3577888885332222221 14666666655
No 260
>3cxt_A Dehydrogenase with different specificities; rossman fold, oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis} PDB: 3cxr_A* 3o03_A*
Probab=25.22 E-value=2.6e+02 Score=22.89 Aligned_cols=21 Identities=10% Similarity=0.112 Sum_probs=13.8
Q ss_pred CHHHHHHHHHh-------cCEEEeCCCC
Q 028817 132 PEEILFEKLKL-------VNGVLLTGGW 152 (203)
Q Consensus 132 ~~e~l~~~Ld~-------VDGVLLTGG~ 152 (203)
+.+.+++.++. +|.|+-.-|.
T Consensus 94 d~~~v~~~~~~~~~~~g~iD~lvnnAg~ 121 (291)
T 3cxt_A 94 DEDGIQAMVAQIESEVGIIDILVNNAGI 121 (291)
T ss_dssp CHHHHHHHHHHHHHHTCCCCEEEECCCC
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEECCCc
Confidence 44555555654 8888887774
No 261
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}
Probab=25.12 E-value=2.5e+02 Score=22.85 Aligned_cols=39 Identities=21% Similarity=0.236 Sum_probs=24.1
Q ss_pred HHHHHHCCCeEEEeecCC-CHHHHHHHHH-------hcCEEEeCCCC
Q 028817 114 VKFVESAGARVIPLIYNE-PEEILFEKLK-------LVNGVLLTGGW 152 (203)
Q Consensus 114 VkaVe~AGA~PV~LP~~~-~~e~l~~~Ld-------~VDGVLLTGG~ 152 (203)
++.++..|.....+..+. +.+.+++.++ .+|.|+-.-|.
T Consensus 81 ~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nAg~ 127 (299)
T 3t7c_A 81 VRQVEALGRRIIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAAL 127 (299)
T ss_dssp HHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 344555666666666543 4555666655 68998877664
No 262
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=25.03 E-value=2.2e+02 Score=25.22 Aligned_cols=63 Identities=10% Similarity=0.042 Sum_probs=42.0
Q ss_pred HHHHHHHHHCCCeEEEeecCC------CHHHHHHHHHh------cCEEEeCCCCCCCCcCh--HHHHHHHHHHHHHH
Q 028817 111 ASYVKFVESAGARVIPLIYNE------PEEILFEKLKL------VNGVLLTGGWAKKGLYF--QIVEKIFKHEAIYE 173 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~------~~e~l~~~Ld~------VDGVLLTGG~DVdP~yY--~~~~~I~~~AL~~n 173 (203)
..|...++.+|+.++.++.+. +.+.+++.++. ...|+++--.+-....| +..+.|.+.|.+.+
T Consensus 192 ~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~ 268 (498)
T 3ihj_A 192 PLYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEK 268 (498)
T ss_dssp THHHHHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcC
Confidence 367788899999999998753 56778888775 67788752222233333 34567777776643
No 263
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*
Probab=25.00 E-value=2.5e+02 Score=22.04 Aligned_cols=34 Identities=18% Similarity=0.129 Sum_probs=18.4
Q ss_pred HCCCeEEEeecCC-CHHHHHHHHH-------hcCEEEeCCCC
Q 028817 119 SAGARVIPLIYNE-PEEILFEKLK-------LVNGVLLTGGW 152 (203)
Q Consensus 119 ~AGA~PV~LP~~~-~~e~l~~~Ld-------~VDGVLLTGG~ 152 (203)
..|.....+..+. +.+.+++.++ .+|+|+-.-|.
T Consensus 53 ~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~lv~nAg~ 94 (247)
T 2jah_A 53 AAGAKVHVLELDVADRQGVDAAVASTVEALGGLDILVNNAGI 94 (247)
T ss_dssp HTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred hcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 3344444444432 4445555554 67888877664
No 264
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}
Probab=24.98 E-value=2.3e+02 Score=22.68 Aligned_cols=39 Identities=13% Similarity=0.104 Sum_probs=24.7
Q ss_pred HHHHHCCCeEEEeecCC-CHHHHHHHHH-------hcCEEEeCCCCC
Q 028817 115 KFVESAGARVIPLIYNE-PEEILFEKLK-------LVNGVLLTGGWA 153 (203)
Q Consensus 115 kaVe~AGA~PV~LP~~~-~~e~l~~~Ld-------~VDGVLLTGG~D 153 (203)
+.++..|.....+..+. +.+.+++.++ .+|.|+-.-|..
T Consensus 55 ~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lvnnAG~~ 101 (274)
T 3e03_A 55 AAVNAAGGQGLALKCDIREEDQVRAAVAATVDTFGGIDILVNNASAI 101 (274)
T ss_dssp HHHHHHTSEEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECCCcc
Confidence 44555566666666543 4555555555 689999888753
No 265
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=24.96 E-value=1.9e+02 Score=23.87 Aligned_cols=59 Identities=15% Similarity=0.039 Sum_probs=37.0
Q ss_pred HHHHHHHHCCCeEEEeecCCCHHHHHHHHHh-----cCEEEeCCCCCCCCcChHHHHHHHHHHHHH
Q 028817 112 SYVKFVESAGARVIPLIYNEPEEILFEKLKL-----VNGVLLTGGWAKKGLYFQIVEKIFKHEAIY 172 (203)
Q Consensus 112 sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~-----VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~ 172 (203)
.|...++..|+.++.++. .+.+.+++.++. ...|+++.-..-....+ ..+.|.+.+.+.
T Consensus 139 ~~~~~~~~~g~~~~~v~~-~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~-~~~~l~~~~~~~ 202 (398)
T 3a2b_A 139 SIIDGSRLSFSKVIKYGH-NNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIV-NLPELTSIANEF 202 (398)
T ss_dssp HHHHHHHHSSSEEEEECT-TCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBC-CHHHHHHHHHHH
T ss_pred HHHHHHHHcCCceEEeCC-CCHHHHHHHHHhhccCCceEEEEeCCCCCCCCcc-CHHHHHHHHHHc
Confidence 556778889999999997 467888888875 44555543222111111 156666666654
No 266
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=24.88 E-value=1.1e+02 Score=24.20 Aligned_cols=60 Identities=13% Similarity=-0.014 Sum_probs=34.6
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHH----HHHHH-HhcCEEEeCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEI----LFEKL-KLVNGVLLTGG 151 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~----l~~~L-d~VDGVLLTGG 151 (203)
+..||+....... ..+..+.+..-++.++.|...+++... +.+. ++.++ ..+|||++.+.
T Consensus 2 ~~~Ig~i~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~i~~l~~~~vdgiii~~~ 66 (306)
T 8abp_A 2 NLKLGFLVKQPEE--------PWFQTEWKFADKAGKDLGFEVIKIAVP-DGEKTLNAIDSLAASGAKGFVICTP 66 (306)
T ss_dssp CEEEEEEESCTTS--------HHHHHHHHHHHHHHHHHTEEEEEEECC-SHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred CeEEEEEeCCCCc--------hHHHHHHHHHHHHHHHcCCEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3578887653321 122334455555667778888777653 4432 23322 46899999874
No 267
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=24.62 E-value=2.4e+02 Score=21.76 Aligned_cols=46 Identities=20% Similarity=0.237 Sum_probs=31.1
Q ss_pred hhhHHHHHHHHHCCCeEEEeecC---------------CCHHHHHHHHH---------hcCEEEeCCCCC
Q 028817 108 YIAASYVKFVESAGARVIPLIYN---------------EPEEILFEKLK---------LVNGVLLTGGWA 153 (203)
Q Consensus 108 yI~~sYVkaVe~AGA~PV~LP~~---------------~~~e~l~~~Ld---------~VDGVLLTGG~D 153 (203)
.+.+..++.+.+.|+.++.+--+ .+.+.+++.++ .+|.|+-.-|..
T Consensus 14 gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~g~id~lv~~Ag~~ 83 (236)
T 1ooe_A 14 ALGSAILEFFKKNGYTVLNIDLSANDQADSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGVFCVAGGW 83 (236)
T ss_dssp HHHHHHHHHHHHTTEEEEEEESSCCTTSSEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEEEECCCCC
T ss_pred HHHHHHHHHHHHCCCEEEEEecCccccccccEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCEEEECCccc
Confidence 58888888888889887765321 12344445554 789999988753
No 268
>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis}
Probab=24.60 E-value=98 Score=25.14 Aligned_cols=41 Identities=20% Similarity=0.316 Sum_probs=31.0
Q ss_pred chhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHh-cCEEE
Q 028817 106 ASYIAASYVKFVESAGARVIPLIYNEPEEILFEKLKL-VNGVL 147 (203)
Q Consensus 106 ~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~-VDGVL 147 (203)
...+...+|+.+.++|-.+.+.-. .+.+++..+++. ||||+
T Consensus 196 ~~~~~~~~v~~~~~~G~~v~~wTv-n~~~~~~~l~~~GvdgIi 237 (252)
T 2pz0_A 196 YFNIIPELVEGCKKNGVKLFPWTV-DRKEDMERMIKAGVDGII 237 (252)
T ss_dssp GGGCCHHHHHHHHHTTCEECCBCC-CSHHHHHHHHHHTCSEEE
T ss_pred hhcCCHHHHHHHHHCCCEEEEECC-CCHHHHHHHHHcCCCEEE
Confidence 345678899999999987766654 467778888874 99976
No 269
>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}
Probab=24.54 E-value=1.6e+02 Score=26.94 Aligned_cols=39 Identities=18% Similarity=0.211 Sum_probs=27.1
Q ss_pred HHHHHCCCeEEEeecCC-CHHHHHHHHHh--cCEEEeCCCCC
Q 028817 115 KFVESAGARVIPLIYNE-PEEILFEKLKL--VNGVLLTGGWA 153 (203)
Q Consensus 115 kaVe~AGA~PV~LP~~~-~~e~l~~~Ld~--VDGVLLTGG~D 153 (203)
+.++..|+.+..+..+. +.+.++++++. +|+|+-.-|.-
T Consensus 305 ~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~~~ld~VVh~AGv~ 346 (511)
T 2z5l_A 305 EELRGHGCEVVHAACDVAERDALAALVTAYPPNAVFHTAGIL 346 (511)
T ss_dssp HHHHTTTCEEEEEECCSSCHHHHHHHHHHSCCSEEEECCCCC
T ss_pred HHHHhcCCEEEEEEeCCCCHHHHHHHHhcCCCcEEEECCccc
Confidence 34455566665555543 56778888887 99999998853
No 270
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*
Probab=24.35 E-value=2.8e+02 Score=22.28 Aligned_cols=32 Identities=9% Similarity=-0.009 Sum_probs=17.6
Q ss_pred CCeEEEeecCC-CHHHHHHHHH-------hcCEEEeCCCC
Q 028817 121 GARVIPLIYNE-PEEILFEKLK-------LVNGVLLTGGW 152 (203)
Q Consensus 121 GA~PV~LP~~~-~~e~l~~~Ld-------~VDGVLLTGG~ 152 (203)
|.....+..+. +.+.+++.++ .+|.|+-.-|.
T Consensus 70 ~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~~Ag~ 109 (277)
T 2rhc_B 70 GVEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAGR 109 (277)
T ss_dssp TCCEEEEECCTTCHHHHHHHHHHHHHHTCSCSEEEECCCC
T ss_pred CCceEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 44333333332 3455555555 57888877764
No 271
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Probab=24.22 E-value=2.4e+02 Score=22.64 Aligned_cols=20 Identities=25% Similarity=0.144 Sum_probs=11.3
Q ss_pred hhhHHHHHHHHHCCCeEEEe
Q 028817 108 YIAASYVKFVESAGARVIPL 127 (203)
Q Consensus 108 yI~~sYVkaVe~AGA~PV~L 127 (203)
.|.+..++.+.+.|+.++++
T Consensus 38 GIG~aia~~la~~G~~Vv~~ 57 (267)
T 3u5t_A 38 GIGAAIAARLASDGFTVVIN 57 (267)
T ss_dssp HHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEE
Confidence 35555556565566665544
No 272
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=24.02 E-value=1.9e+02 Score=24.36 Aligned_cols=84 Identities=14% Similarity=0.053 Sum_probs=44.3
Q ss_pred EEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHH---------------HHH------HHHHhc
Q 028817 85 VIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEE---------------ILF------EKLKLV 143 (203)
Q Consensus 85 VIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e---------------~l~------~~Ld~V 143 (203)
.|+|..++... ...-..+..++++++.|..+++........ ..+ ...+.+
T Consensus 6 ki~iI~n~~~~---------~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 76 (307)
T 1u0t_A 6 SVLLVVHTGRD---------EATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGC 76 (307)
T ss_dssp EEEEEESSSGG---------GGSHHHHHHHHHHHTTTCEEEEEC-----------------------------------C
T ss_pred EEEEEEeCCCH---------HHHHHHHHHHHHHHHCCCEEEEecchhhhhhcccccccccccccccccccccccccccCC
Confidence 57888887432 122345677788888998877655432110 011 234556
Q ss_pred CEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceEeeCCcc
Q 028817 144 NGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHGITGDVV 188 (203)
Q Consensus 144 DGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~Gic~~~~ 188 (203)
|-|+.-||. ++.....+..... +.||+||=.|++
T Consensus 77 d~vi~~GGD-------GT~l~a~~~~~~~----~~pvlgi~~G~~ 110 (307)
T 1u0t_A 77 ELVLVLGGD-------GTFLRAAELARNA----SIPVLGVNLGRI 110 (307)
T ss_dssp CCEEEEECH-------HHHHHHHHHHHHH----TCCEEEEECSSC
T ss_pred CEEEEEeCC-------HHHHHHHHHhccC----CCCEEEEeCCCC
Confidence 777766664 3333333333322 369999988887
No 273
>2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A
Probab=23.93 E-value=1e+02 Score=25.62 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=30.0
Q ss_pred hhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHh-cCEEE
Q 028817 107 SYIAASYVKFVESAGARVIPLIYNEPEEILFEKLKL-VNGVL 147 (203)
Q Consensus 107 syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~-VDGVL 147 (203)
..+...+|+.+.++|-.+.+.-. .+.+++..+++. ||||+
T Consensus 227 ~~~~~~~v~~~~~~G~~v~~wTv-n~~~~~~~l~~~GVdgIi 267 (287)
T 2oog_A 227 TDLTEQNTHHLKDLGFIVHPYTV-NEKADMLRLNKYGVDGVF 267 (287)
T ss_dssp GGCCHHHHHHHHHTTCEECCBCC-CSHHHHHHHHHHTCSEEE
T ss_pred hhcCHHHHHHHHHCCCeEEEEeC-CCHHHHHHHHHcCCCEEE
Confidence 34568889999999877666554 467778888776 99985
No 274
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=23.90 E-value=85 Score=26.67 Aligned_cols=66 Identities=5% Similarity=-0.116 Sum_probs=40.0
Q ss_pred hhhHHHHHHHHHCCCeEEEee-cCCCHHHHHHHHHh----cCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceE
Q 028817 108 YIAASYVKFVESAGARVIPLI-YNEPEEILFEKLKL----VNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHG 182 (203)
Q Consensus 108 yI~~sYVkaVe~AGA~PV~LP-~~~~~e~l~~~Ld~----VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~G 182 (203)
-+.+.+.+.+++.|+.++-.- +... .+....|.. .|.|+++ .+|.++..|.+.+ +.. ..+.|+.|
T Consensus 137 ~~~~~F~~~~~~~Gg~vv~~~~y~~~-~d~~~~l~~i~~~pDaV~~~-------~~~~~~~~i~~~~-~~~-g~~~pl~~ 206 (325)
T 2h4a_A 137 RVGNAFNVRWQQLAGTDANIRYYNLP-ADVTYFVQENNSNTTALYAV-------ASPTELAEXKGYL-TNI-VPNLAIYA 206 (325)
T ss_dssp HHHHHHHHHHHHHHSSCCEEEEESST-THHHHHHHHSTTCCCEEEEC-------CCHHHHHHHHHHH-TTT-CTTCEEEE
T ss_pred HHHHHHHHHHHHcCCCcceeEecCCH-HHHHHHHHhcCCCCCEEEEe-------CCHHHHhhhhhhH-hhc-CCCCCEEE
Confidence 356777788888888877553 3333 456666665 5666664 4566665554443 322 33348888
Q ss_pred e
Q 028817 183 I 183 (203)
Q Consensus 183 i 183 (203)
.
T Consensus 207 ~ 207 (325)
T 2h4a_A 207 S 207 (325)
T ss_dssp C
T ss_pred e
Confidence 6
No 275
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=23.88 E-value=2.8e+02 Score=22.45 Aligned_cols=62 Identities=15% Similarity=0.109 Sum_probs=39.0
Q ss_pred HHHHHHHHCCCeEEEeecC-------CCHHHHHHHHH-hcCEEEeCCCCCCCCcCh--HHHHHHHHHHHHHH
Q 028817 112 SYVKFVESAGARVIPLIYN-------EPEEILFEKLK-LVNGVLLTGGWAKKGLYF--QIVEKIFKHEAIYE 173 (203)
Q Consensus 112 sYVkaVe~AGA~PV~LP~~-------~~~e~l~~~Ld-~VDGVLLTGG~DVdP~yY--~~~~~I~~~AL~~n 173 (203)
.|.+.++..|+.++.++.. .+.+.+++.++ ....|+++--.......+ +..+.|.+.+.+.+
T Consensus 118 ~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~ 189 (383)
T 3kax_A 118 PFFEMVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQFQQGVKLMLLCSPHNPIGRVWKKEELTKLGSLCTKYN 189 (383)
T ss_dssp HHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTTTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCEEEeccceecCCcEEEcHHHHHHHhCcCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHCC
Confidence 5667788999999999874 35677777773 567777753322222222 34556666665543
No 276
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0
Probab=23.85 E-value=2.7e+02 Score=22.24 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=23.1
Q ss_pred HHHHHCCCeEEEeecCC-CHHHHHHHHH-------hcCEEEeCCCC
Q 028817 115 KFVESAGARVIPLIYNE-PEEILFEKLK-------LVNGVLLTGGW 152 (203)
Q Consensus 115 kaVe~AGA~PV~LP~~~-~~e~l~~~Ld-------~VDGVLLTGG~ 152 (203)
+.++..|.....+..+. +.+.+++.++ .+|.|+-.-|.
T Consensus 64 ~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~ 109 (281)
T 3s55_A 64 ALVEKTGRRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGI 109 (281)
T ss_dssp HHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHTCCCEEEECCCC
T ss_pred HHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 33445565555555543 4555666665 68988887764
No 277
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Probab=23.85 E-value=2.8e+02 Score=22.13 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=32.6
Q ss_pred hhhHHHHHHHHHCCCeEEEeec-------------C-CCHHHHHHHHH-------hcCEEEeCCCC
Q 028817 108 YIAASYVKFVESAGARVIPLIY-------------N-EPEEILFEKLK-------LVNGVLLTGGW 152 (203)
Q Consensus 108 yI~~sYVkaVe~AGA~PV~LP~-------------~-~~~e~l~~~Ld-------~VDGVLLTGG~ 152 (203)
.|.+..++.+.+.|+.++++-- + .+.+.+++.++ .+|.|+-.-|.
T Consensus 19 gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~~Ag~ 84 (264)
T 2dtx_A 19 GIGRAIAERFVDEGSKVIDLSIHDPGEAKYDHIECDVTNPDQVKASIDHIFKEYGSISVLVNNAGI 84 (264)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESSCCCSCSSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHCCCEEEEEecCcccCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 5888888888888998776532 1 24556666666 68999998875
No 278
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=23.79 E-value=2.2e+02 Score=24.19 Aligned_cols=41 Identities=10% Similarity=0.000 Sum_probs=25.7
Q ss_pred HHHHHHHHHCCCeEEEe---ecCCCHHHHHHHHH-hcCEEEeC--CC
Q 028817 111 ASYVKFVESAGARVIPL---IYNEPEEILFEKLK-LVNGVLLT--GG 151 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~L---P~~~~~e~l~~~Ld-~VDGVLLT--GG 151 (203)
...++++.++-..||++ .+..+.+.+....+ .+|||+++ ||
T Consensus 167 ~~~i~~vr~~~~~Pv~vK~~~~~~~~~~a~~a~~~Gad~I~v~~~gg 213 (349)
T 1p0k_A 167 LKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGG 213 (349)
T ss_dssp HHHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHHHTCSEEEEEC---
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEEcCCCC
Confidence 35677776654567776 44356666655544 59999994 55
No 279
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=23.62 E-value=2e+02 Score=23.86 Aligned_cols=61 Identities=18% Similarity=0.261 Sum_probs=37.4
Q ss_pred HHHHHHHHCCCeEEEeecCC---CHHHHHHHHH-------hcCEEE-eCCCCCCCCcCh--HHHHHHHHHHHHH
Q 028817 112 SYVKFVESAGARVIPLIYNE---PEEILFEKLK-------LVNGVL-LTGGWAKKGLYF--QIVEKIFKHEAIY 172 (203)
Q Consensus 112 sYVkaVe~AGA~PV~LP~~~---~~e~l~~~Ld-------~VDGVL-LTGG~DVdP~yY--~~~~~I~~~AL~~ 172 (203)
.|.+.++..|+.++.+|.+. +.+.+++.++ ....|+ ++.........+ +..+.|.+.+.+.
T Consensus 134 ~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~ 207 (407)
T 2zc0_A 134 NTLLAFEQLGAKIEGVPVDNDGMRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKY 207 (407)
T ss_dssp HHHHHHHTTTCEEEEEEEETTEECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCEEEEcccCCCCCCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHc
Confidence 46677888999999998743 5677777776 355664 444333222223 3345667766654
No 280
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G
Probab=23.47 E-value=2.5e+02 Score=21.50 Aligned_cols=37 Identities=19% Similarity=0.211 Sum_probs=23.1
Q ss_pred HHHCCCeEEEeecCC-CHHHHHHHHH-------hcCEEEeCCCCC
Q 028817 117 VESAGARVIPLIYNE-PEEILFEKLK-------LVNGVLLTGGWA 153 (203)
Q Consensus 117 Ve~AGA~PV~LP~~~-~~e~l~~~Ld-------~VDGVLLTGG~D 153 (203)
++..|.....+..+. +.+.+++.++ .+|.|+-.-|..
T Consensus 46 ~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~~Ag~~ 90 (244)
T 1edo_A 46 IEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTIDVVVNNAGIT 90 (244)
T ss_dssp HHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCCSEEEECCCCC
T ss_pred HHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 444455555555442 4566777776 589999887753
No 281
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0
Probab=23.41 E-value=2.6e+02 Score=21.92 Aligned_cols=21 Identities=10% Similarity=-0.048 Sum_probs=15.1
Q ss_pred hhhHHHHHHHHHCCCeEEEee
Q 028817 108 YIAASYVKFVESAGARVIPLI 128 (203)
Q Consensus 108 yI~~sYVkaVe~AGA~PV~LP 128 (203)
.|....++.+.+.|+.++++-
T Consensus 14 GIG~a~a~~l~~~G~~V~~~~ 34 (235)
T 3l6e_A 14 GLGRALTIGLVERGHQVSMMG 34 (235)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 477777777777888776653
No 282
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=23.36 E-value=1.8e+02 Score=23.12 Aligned_cols=60 Identities=18% Similarity=0.055 Sum_probs=38.5
Q ss_pred HHHHHHHHCCCeEEEeecC----CCHHHHHHHHH--hcCEEEeCCCCCCCCcChHHHHHHHHHHHHH
Q 028817 112 SYVKFVESAGARVIPLIYN----EPEEILFEKLK--LVNGVLLTGGWAKKGLYFQIVEKIFKHEAIY 172 (203)
Q Consensus 112 sYVkaVe~AGA~PV~LP~~----~~~e~l~~~Ld--~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~ 172 (203)
.+.+.++..|+.++.++.+ .+.+.+++.++ +...|+++-........+. .+.|.+.+.+.
T Consensus 88 ~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~-~~~i~~l~~~~ 153 (353)
T 2yrr_A 88 RVAEMAALHGLDPEVLDFPPGEPVDPEAVARALKRRRYRMVALVHGETSTGVLNP-AEAIGALAKEA 153 (353)
T ss_dssp HHHHHHHHTTCCEEEEECCTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECC-HHHHHHHHHHH
T ss_pred HHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHHhCCCCEEEEEccCCCcceecC-HHHHHHHHHHc
Confidence 3456678899999999874 25677777776 4778888765433333222 44666666654
No 283
>1v8a_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, structural genomics, riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii} PDB: 3hpd_A
Probab=23.25 E-value=1.5e+02 Score=24.64 Aligned_cols=39 Identities=23% Similarity=0.218 Sum_probs=28.4
Q ss_pred HHHHH-HHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCC
Q 028817 111 ASYVK-FVESAGARVIPLIYNEPEEILFEKLKLVNGVLLTGGW 152 (203)
Q Consensus 111 ~sYVk-aVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~ 152 (203)
..++. .+...||.|++.. ..+++++.+++.|.|++--|-
T Consensus 27 ~~~~an~~la~gasp~M~~---~~~e~~~~~~~~dalvi~~G~ 66 (265)
T 1v8a_A 27 MNTTANALLALGASPVMAH---AEEELEEMIRLADAVVINIGT 66 (265)
T ss_dssp HHHHHHHHHHHTCEEEECC---CTTTHHHHHHHCSEEEEECTT
T ss_pred ecchHHHHHhcCCCccccC---CHHHHHHHHHHCCEEEEEECC
Confidence 33444 5677899999975 345677889999999994443
No 284
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*
Probab=23.23 E-value=2.4e+02 Score=22.16 Aligned_cols=12 Identities=17% Similarity=0.122 Sum_probs=9.0
Q ss_pred hcCEEEeCCCCC
Q 028817 142 LVNGVLLTGGWA 153 (203)
Q Consensus 142 ~VDGVLLTGG~D 153 (203)
.+|.|+-.-|..
T Consensus 72 ~iD~lv~nAg~~ 83 (254)
T 1zmt_A 72 QVDVLVSNDIFA 83 (254)
T ss_dssp CCCEEEEECCCC
T ss_pred CCCEEEECCCcC
Confidence 689988877743
No 285
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0
Probab=23.22 E-value=2.7e+02 Score=21.78 Aligned_cols=44 Identities=11% Similarity=0.095 Sum_probs=29.8
Q ss_pred hhhHHHHHHHHHCCCeEEEee-------------------------cC-CCHHHHHHHHH-------hcCEEEeCCC
Q 028817 108 YIAASYVKFVESAGARVIPLI-------------------------YN-EPEEILFEKLK-------LVNGVLLTGG 151 (203)
Q Consensus 108 yI~~sYVkaVe~AGA~PV~LP-------------------------~~-~~~e~l~~~Ld-------~VDGVLLTGG 151 (203)
.+....++.+.+.|+.++++- .+ .+.+.+++.++ .+|.|+-.-|
T Consensus 18 gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~id~lv~~Ag 94 (264)
T 3i4f_A 18 GLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSHFGKIDFLINNAG 94 (264)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEECCCC
T ss_pred hhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEECCc
Confidence 577777787877888777652 11 23455555565 7899998877
No 286
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}
Probab=23.17 E-value=2.6e+02 Score=23.04 Aligned_cols=56 Identities=18% Similarity=0.105 Sum_probs=39.2
Q ss_pred CEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHC-CCeEEEeecC--------------------C-CHHHHHHHHH
Q 028817 84 PVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESA-GARVIPLIYN--------------------E-PEEILFEKLK 141 (203)
Q Consensus 84 PVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~A-GA~PV~LP~~--------------------~-~~e~l~~~Ld 141 (203)
..|-|++..+ ++...-++.+.+. |..++.+--. . +.+.+++.++
T Consensus 25 ~~vlVtGatG--------------~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~ 90 (372)
T 3slg_A 25 KKVLILGVNG--------------FIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVK 90 (372)
T ss_dssp CEEEEESCSS--------------HHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHH
T ss_pred CEEEEECCCC--------------hHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhc
Confidence 4677776642 5777778877666 7666655321 1 5667888999
Q ss_pred hcCEEEeCCCCC
Q 028817 142 LVNGVLLTGGWA 153 (203)
Q Consensus 142 ~VDGVLLTGG~D 153 (203)
.+|.|+-..|..
T Consensus 91 ~~d~Vih~A~~~ 102 (372)
T 3slg_A 91 KCDVILPLVAIA 102 (372)
T ss_dssp HCSEEEECBCCC
T ss_pred cCCEEEEcCccc
Confidence 999999887753
No 287
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=23.15 E-value=2.8e+02 Score=21.93 Aligned_cols=37 Identities=19% Similarity=0.260 Sum_probs=21.2
Q ss_pred HHHHCCCeEEEeecCC-CHHHHHHHHH------hcCEEEeCCCC
Q 028817 116 FVESAGARVIPLIYNE-PEEILFEKLK------LVNGVLLTGGW 152 (203)
Q Consensus 116 aVe~AGA~PV~LP~~~-~~e~l~~~Ld------~VDGVLLTGG~ 152 (203)
.++..|.....+..+. +.+.+++.++ .+|.|+-.-|.
T Consensus 50 ~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~g~id~lv~nAg~ 93 (252)
T 3h7a_A 50 EIEAAGGRIVARSLDARNEDEVTAFLNAADAHAPLEVTIFNVGA 93 (252)
T ss_dssp HHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHSCEEEEEECCCC
T ss_pred HHHhcCCeEEEEECcCCCHHHHHHHHHHHHhhCCceEEEECCCc
Confidence 3444455555555432 4455666665 56888877764
No 288
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=23.12 E-value=1.9e+02 Score=25.72 Aligned_cols=75 Identities=13% Similarity=0.097 Sum_probs=46.6
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHC-CCeEEEe----e-cCCCHHHHHHHHHhcCEEEeCCCCCCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESA-GARVIPL----I-YNEPEEILFEKLKLVNGVLLTGGWAKKG 156 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~A-GA~PV~L----P-~~~~~e~l~~~Ld~VDGVLLTGG~DVdP 156 (203)
+.|+.|.+++... .+.+.+..++++.+. +...+-| | +..+.+...+.+...|+|+| ..|
T Consensus 237 mkiLvi~gspr~~----------ss~~n~~l~~~~~~~~~v~v~dL~~~~p~~~~d~~~~~~~l~~aD~iv~-----~~P 301 (413)
T 3l9w_A 237 GMILIIYAHPYPH----------HSHANKRMLEQARTLEGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVW-----QHP 301 (413)
T ss_dssp CCEEEEECCSCGG----------GCSHHHHHHHHHHTSSSEEEEEHHHHCTTSCCCHHHHHHHHHTCSEEEE-----EEE
T ss_pred CCEEEEEECCCcc----------hHHHHHHHHHHHhcCCCEEEEEchhhCCCCcHHHHHHHHHHHhCCEEEE-----ECc
Confidence 4588888887641 133667777776653 3333333 1 12355677789999999999 478
Q ss_pred cChHHHHHHHHHHHHH
Q 028817 157 LYFQIVEKIFKHEAIY 172 (203)
Q Consensus 157 ~yY~~~~~I~~~AL~~ 172 (203)
.|+...--++|..++.
T Consensus 302 ~yw~~~Pa~lK~~iDr 317 (413)
T 3l9w_A 302 MQWYSIPPLLKLWIDK 317 (413)
T ss_dssp CBTTBCCHHHHHHHHH
T ss_pred hhhccCCHHHHHHHHH
Confidence 8886554444444443
No 289
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Probab=23.08 E-value=2.8e+02 Score=21.80 Aligned_cols=45 Identities=11% Similarity=0.111 Sum_probs=32.1
Q ss_pred hhhHHHHHHHHHCCCeEEEeec-------------C-CCHHHHHHHHH-------hcCEEEeCCCC
Q 028817 108 YIAASYVKFVESAGARVIPLIY-------------N-EPEEILFEKLK-------LVNGVLLTGGW 152 (203)
Q Consensus 108 yI~~sYVkaVe~AGA~PV~LP~-------------~-~~~e~l~~~Ld-------~VDGVLLTGG~ 152 (203)
.+.+..++.+.+.|+.++++-- + .+.+.+++.++ .+|.|+-.-|.
T Consensus 26 gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv~~Ag~ 91 (247)
T 1uzm_A 26 GIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGL 91 (247)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESSSCCCTTSEEEECCTTCHHHHHHHHHHHHHHHSSCSEEEEECSC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCChHHHHHhcCeeccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 5888888999899999877532 1 23455666665 57999988775
No 290
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=22.99 E-value=1.8e+02 Score=23.89 Aligned_cols=61 Identities=20% Similarity=0.249 Sum_probs=32.7
Q ss_pred CCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCC-HHH----HHHHH-HhcCEEEeCCC
Q 028817 83 RPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEP-EEI----LFEKL-KLVNGVLLTGG 151 (203)
Q Consensus 83 rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~-~e~----l~~~L-d~VDGVLLTGG 151 (203)
..+||+....... .....+.+...+.+++.|-..++.....+ .+. ++.++ ..+|||++.+.
T Consensus 61 ~~~Igvi~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~~vdGiIi~~~ 127 (349)
T 1jye_A 61 SLLIGVATSSLAL--------HAPSQIVAAILSRADQLGASVVVSMVERSGVEACKTAVHNLLAQRVSGLIINYP 127 (349)
T ss_dssp -CEEEEEESCTTS--------HHHHHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHHHTTTCSCEEEESC
T ss_pred CCEEEEEeCCCCc--------ccHHHHHHHHHHHHHHcCCEEEEEeCCCCcHHHHHHHHHHHHHCCCCEEEEecC
Confidence 3588987643211 11222334444456678888777665432 222 33333 46999999764
No 291
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Probab=22.91 E-value=2.6e+02 Score=21.97 Aligned_cols=36 Identities=8% Similarity=0.061 Sum_probs=21.6
Q ss_pred HHHCCCeEEEeecC-CCHHHHHHHHH-------hcCEEEeCCCC
Q 028817 117 VESAGARVIPLIYN-EPEEILFEKLK-------LVNGVLLTGGW 152 (203)
Q Consensus 117 Ve~AGA~PV~LP~~-~~~e~l~~~Ld-------~VDGVLLTGG~ 152 (203)
+++.|.....+..+ .+.+.+++.++ .+|.|+-.-|.
T Consensus 46 l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~~Ag~ 89 (255)
T 2q2v_A 46 IARHGVKAVHHPADLSDVAQIEALFALAEREFGGVDILVNNAGI 89 (255)
T ss_dssp HHTTSCCEEEECCCTTSHHHHHHHHHHHHHHHSSCSEEEECCCC
T ss_pred HHhcCCceEEEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 33344444444443 24566667776 78999887774
No 292
>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}
Probab=22.76 E-value=1.5e+02 Score=22.81 Aligned_cols=45 Identities=20% Similarity=0.200 Sum_probs=33.7
Q ss_pred hhhHHHHHHHHHCCCeEEEeecC-----CCHHHHHHHHH---hcCEEEeCCCC
Q 028817 108 YIAASYVKFVESAGARVIPLIYN-----EPEEILFEKLK---LVNGVLLTGGW 152 (203)
Q Consensus 108 yI~~sYVkaVe~AGA~PV~LP~~-----~~~e~l~~~Ld---~VDGVLLTGG~ 152 (203)
.|.+..++.+.+.|+.++++--. .+.+.+++.++ .+|.|+-.-|.
T Consensus 17 gIG~~~a~~l~~~G~~V~~~~r~~~~D~~~~~~v~~~~~~~g~id~lv~nAg~ 69 (223)
T 3uce_A 17 GIGAELAKQLESEHTIVHVASRQTGLDISDEKSVYHYFETIGAFDHLIVTAGS 69 (223)
T ss_dssp HHHHHHHHHHCSTTEEEEEESGGGTCCTTCHHHHHHHHHHHCSEEEEEECCCC
T ss_pred HHHHHHHHHHHHCCCEEEEecCCcccCCCCHHHHHHHHHHhCCCCEEEECCCC
Confidence 58888888888889988876532 24566777776 68999987774
No 293
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}
Probab=22.70 E-value=2.8e+02 Score=21.74 Aligned_cols=45 Identities=13% Similarity=0.086 Sum_probs=32.8
Q ss_pred hhhHHHHHHHHHCCCeEEEeec--------------C-CCHHHHHHHHH-------hcCEEEeCCCC
Q 028817 108 YIAASYVKFVESAGARVIPLIY--------------N-EPEEILFEKLK-------LVNGVLLTGGW 152 (203)
Q Consensus 108 yI~~sYVkaVe~AGA~PV~LP~--------------~-~~~e~l~~~Ld-------~VDGVLLTGG~ 152 (203)
.+.+..++.+.+.|+.++.+-- + .+.+.+++.++ .+|.|+-.-|.
T Consensus 18 giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~id~lv~~Ag~ 84 (250)
T 2fwm_X 18 GIGYATALAFVEAGAKVTGFDQAFTQEQYPFATEVMDVADAAQVAQVCQRLLAETERLDALVNAAGI 84 (250)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESCCCSSCCSSEEEECCTTCHHHHHHHHHHHHHHCSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCchhhhcCCceEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 5788888888888998876521 1 24566777776 68999988775
No 294
>1o5x_A TIM, triosephosphate isomerase; 2- phosphoglycerate, META-phosphate, catalytic LOOP6; HET: 2PG; 1.10A {Plasmodium falciparum} SCOP: c.1.1.1 PDB: 1lzo_A 1m7o_A* 1m7p_A* 1lyx_A* 1ydv_A 2vfi_A* 3psw_A 3psv_A 3pwa_A 2vfh_A* 2vff_A 2vfg_A* 1vga_A 1woa_A* 1wob_A 3pvf_A 3py2_A 2vfd_A 2vfe_A*
Probab=22.56 E-value=1.3e+02 Score=25.49 Aligned_cols=71 Identities=11% Similarity=-0.011 Sum_probs=42.0
Q ss_pred hHHHHHHHHH-----CCCeEEEeecCCCHHHHHHHHHhcCEEEeCCCCCCCCc----ChHH-------------------
Q 028817 110 AASYVKFVES-----AGARVIPLIYNEPEEILFEKLKLVNGVLLTGGWAKKGL----YFQI------------------- 161 (203)
Q Consensus 110 ~~sYVkaVe~-----AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~DVdP~----yY~~------------------- 161 (203)
...|++.+.. .+..+++.|+......+.+.++ +. +..|++|+++. |.++
T Consensus 20 ~~~l~~~l~~~~~~~~~vev~v~Pp~~~L~~v~~~~~--~~-i~vgAQn~~~~~~GA~TGEiS~~mL~d~G~~~ViiGHS 96 (248)
T 1o5x_A 20 IKSLTNSFNNLDFDPSKLDVVVFPVSVHYDHTRKLLQ--SK-FSTGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHF 96 (248)
T ss_dssp HHHHHHHHHTSCCCTTTEEEEEECCGGGHHHHHHHSC--TT-SEEEESCCCSSCSBSCTTCCCHHHHHHTTCCEEEECCH
T ss_pred HHHHHHHHHhhcccccCceEEEeCcHHHHHHHHHHhc--cC-CeEEeccCCCCCCCCcCCcCCHHHHHHcCCCEEEeCCh
Confidence 4567777654 1456777776544444444443 34 34488887543 3321
Q ss_pred ---------HHHHHHHHHHHHhCCCCcceEe
Q 028817 162 ---------VEKIFKHEAIYERKKQSLVHGI 183 (203)
Q Consensus 162 ---------~~~I~~~AL~~n~~g~~PV~Gi 183 (203)
...+=+|+..+-++|-.||+-|
T Consensus 97 ERR~~f~Etd~~v~~Kv~~Al~~GL~pI~Cv 127 (248)
T 1o5x_A 97 ERRKYFHETDEDVREKLQASLKNNLKAVVCF 127 (248)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred hhhcccCCCHHHHHHHHHHHHHCCCEEEEEc
Confidence 3466678888888888788754
No 295
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=22.11 E-value=94 Score=26.58 Aligned_cols=58 Identities=12% Similarity=0.134 Sum_probs=30.1
Q ss_pred CCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHH-hcCEEEe
Q 028817 82 NRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKLK-LVNGVLL 148 (203)
Q Consensus 82 ~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld-~VDGVLL 148 (203)
+..+|||... .. . ..+..+.+..-++.++.|...++.......+.++.+.+ .+|||++
T Consensus 24 ~s~~Igvv~~-~~-~-------~f~~~l~~gi~~~a~~~g~~~~i~~~~~~~~~i~~l~~~~vDGiIi 82 (412)
T 4fe7_A 24 KRHRITLLFN-AN-K-------AYDRQVVEGVGEYLQASQSEWDIFIEEDFRARIDKIKDWLGDGVIA 82 (412)
T ss_dssp CCEEEEEECC-TT-S-------HHHHHHHHHHHHHHHHHTCCEEEEECC-CC--------CCCSEEEE
T ss_pred CCceEEEEeC-Cc-c-------hhhHHHHHHHHHHHHhcCCCeEEEecCCccchhhhHhcCCCCEEEE
Confidence 3468999884 21 1 11223444444566777887777765444444444443 6999999
No 296
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=21.92 E-value=2.6e+02 Score=22.34 Aligned_cols=60 Identities=15% Similarity=0.123 Sum_probs=32.2
Q ss_pred CEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEee-cCCCHH----HHHHHH-HhcCEEEeCCCC
Q 028817 84 PVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLI-YNEPEE----ILFEKL-KLVNGVLLTGGW 152 (203)
Q Consensus 84 PVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP-~~~~~e----~l~~~L-d~VDGVLLTGG~ 152 (203)
..||+...... . .+..+.+..-+++++.|...++.- ...+.+ .++.++ +.+|||++.+..
T Consensus 2 ~~Ig~i~~~~~--------~-~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~ 67 (313)
T 2h3h_A 2 LTIGVIGKSVH--------P-YWSQVEQGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIAEGVNGIAIAPSD 67 (313)
T ss_dssp CEEEEECSCSS--------H-HHHHHHHHHHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred eEEEEEeCCCc--------H-HHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 46888764321 1 122233444445666788877653 223332 233333 569999997643
No 297
>3o0f_A Putative metal-dependent phosphoesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: AMP; 1.94A {Bifidobacterium adolescentis} PDB: 3e0f_A*
Probab=21.89 E-value=90 Score=27.01 Aligned_cols=63 Identities=17% Similarity=0.246 Sum_probs=0.0
Q ss_pred EEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEeecCCCHHHHHHHHHhc---CEEEeCCCCCCC
Q 028817 86 IGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPLIYNEPEEILFEKLKLV---NGVLLTGGWAKK 155 (203)
Q Consensus 86 IGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld~V---DGVLLTGG~DVd 155 (203)
|.|++++.... ..+.......++.+..+|..-|=+-+......-.+.+..+ .||+.|||+|.|
T Consensus 198 vaVLAHP~r~~-------~~r~~~~~~~l~~l~~~GldgIEv~~~~~~~~~~~~~~~lA~~~gL~~tgGSD~H 263 (301)
T 3o0f_A 198 VVVAAHAGDPQ-------RNRRLLSDEQLDAMIADGLDGLEVWHRGNPPEQRERLLTIAARHDLLVTGGSDWH 263 (301)
T ss_dssp EEEECSTTCTT-------TCSSCCCHHHHHHHHHHTCCEEEEESTTSCHHHHHHHHHHHHHHTCEEEECCCBC
T ss_pred EEEecChhhhc-------cccccCcHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHcCCceEEEcCCC
No 298
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*
Probab=21.63 E-value=3.1e+02 Score=21.89 Aligned_cols=37 Identities=11% Similarity=0.184 Sum_probs=22.7
Q ss_pred HHHHCCCeEEEeecCC-CHHHHHHHHH-------hcCEEEeCCCC
Q 028817 116 FVESAGARVIPLIYNE-PEEILFEKLK-------LVNGVLLTGGW 152 (203)
Q Consensus 116 aVe~AGA~PV~LP~~~-~~e~l~~~Ld-------~VDGVLLTGG~ 152 (203)
.++..|.....+..+. +.+.+++.++ .+|.|+-.-|.
T Consensus 70 ~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~ 114 (286)
T 3uve_A 70 LVKGHNRRIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGI 114 (286)
T ss_dssp HHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence 3444555555555543 4556666665 68999888775
No 299
>1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A {Escherichia coli}
Probab=21.49 E-value=1.5e+02 Score=27.16 Aligned_cols=67 Identities=10% Similarity=0.069 Sum_probs=45.6
Q ss_pred HHHCCCeEEEeecC-----CCHHHHHHHHHhcCEEEeCCC----------CCC-----CCcChHHHHHHHHHHHHHHhCC
Q 028817 117 VESAGARVIPLIYN-----EPEEILFEKLKLVNGVLLTGG----------WAK-----KGLYFQIVEKIFKHEAIYERKK 176 (203)
Q Consensus 117 Ve~AGA~PV~LP~~-----~~~e~l~~~Ld~VDGVLLTGG----------~DV-----dP~yY~~~~~I~~~AL~~n~~g 176 (203)
+...-.+|++.-.. .-...++.+++.+|.|++.|| .+| +....+.++.|+++ ..
T Consensus 177 ~l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~Sl~E~d~~~~a~~ll~~------~~ 250 (387)
T 1zmr_A 177 ALKEPARPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGGIANTFIAAQGHDVGKSLYEADLVDEAKRLLTT------CN 250 (387)
T ss_dssp HHSSCSSSEEEEEEESCTTTTHHHHHHHHTTCSEEEEEEHHHHHHHHHTTCCCTTCSCCGGGHHHHHHHHTT------SC
T ss_pred HhcCCCCCeEEEEcCcchhhHHHHHHHHHHhcCEEEeCcHHHHHHHHHcCCCCCccccchhhHHHHHHHHHh------CC
Confidence 33356788665542 345788999999999999997 234 44555667777766 22
Q ss_pred CC-cceEeeCCccc
Q 028817 177 QS-LVHGITGDVVQ 189 (203)
Q Consensus 177 ~~-PV~Gic~~~~~ 189 (203)
-. ||=.+|....-
T Consensus 251 i~lPvD~vva~~f~ 264 (387)
T 1zmr_A 251 IPVPSDVRVATEFS 264 (387)
T ss_dssp CCCCSEEEEESSSS
T ss_pred ccCCccceeeeccC
Confidence 33 99888887543
No 300
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=21.48 E-value=2.8e+02 Score=21.37 Aligned_cols=61 Identities=7% Similarity=-0.108 Sum_probs=38.4
Q ss_pred hhhHHHHHHHHHCC-CeEEEeec------------------C-CCHHHHHHHHHhcCEEEeCCCCCCCCcChHHHHHHHH
Q 028817 108 YIAASYVKFVESAG-ARVIPLIY------------------N-EPEEILFEKLKLVNGVLLTGGWAKKGLYFQIVEKIFK 167 (203)
Q Consensus 108 yI~~sYVkaVe~AG-A~PV~LP~------------------~-~~~e~l~~~Ld~VDGVLLTGG~DVdP~yY~~~~~I~~ 167 (203)
++.+.-++.+.+.| ..++.+-- + .+.+.+++.++.+|.|+..-|.. .+....+.+.+
T Consensus 34 ~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~~---~~~~~~~~~~~ 110 (236)
T 3qvo_A 34 QIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGE---DLDIQANSVIA 110 (236)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCST---THHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCCC---chhHHHHHHHH
Confidence 47777777777777 55554421 1 25678889999999999665531 22234555555
Q ss_pred HHHH
Q 028817 168 HEAI 171 (203)
Q Consensus 168 ~AL~ 171 (203)
.+.+
T Consensus 111 ~~~~ 114 (236)
T 3qvo_A 111 AMKA 114 (236)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 301
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=21.34 E-value=3.2e+02 Score=26.77 Aligned_cols=82 Identities=11% Similarity=-0.054 Sum_probs=51.1
Q ss_pred chhhhHHHHHH-HHHCCCeEEEeecCCCHHHHHHHH--HhcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceE
Q 028817 106 ASYIAASYVKF-VESAGARVIPLIYNEPEEILFEKL--KLVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHG 182 (203)
Q Consensus 106 ~syI~~sYVka-Ve~AGA~PV~LP~~~~~e~l~~~L--d~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~G 182 (203)
.+-+....|.. ++.+|-.++-+....+.+++.+.. ..+|-|.+++-.. .+-...+.+.+...++ |-.-|.-
T Consensus 608 ~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~~adiVglSsl~~---~~~~~~~~vi~~L~~~---G~~~i~V 681 (727)
T 1req_A 608 GHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEADVHVVGVSSLAG---GHLTLVPALRKELDKL---GRPDILI 681 (727)
T ss_dssp CCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHHTTCSEEEEEECSS---CHHHHHHHHHHHHHHT---TCTTSEE
T ss_pred hhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHcCCCEEEEeeecH---hHHHHHHHHHHHHHhc---CCCCCEE
Confidence 35688888885 577899999998766666554433 4677888877422 3334445555444333 3323677
Q ss_pred eeCC-ccccccc
Q 028817 183 ITGD-VVQKDYY 193 (203)
Q Consensus 183 ic~~-~~~~~~~ 193 (203)
++|| ...+|+-
T Consensus 682 ivGG~~p~~d~~ 693 (727)
T 1req_A 682 TVGGVIPEQDFD 693 (727)
T ss_dssp EEEESCCGGGHH
T ss_pred EEcCCCccccHH
Confidence 8999 4555553
No 302
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=20.99 E-value=64 Score=28.54 Aligned_cols=93 Identities=23% Similarity=0.150 Sum_probs=42.4
Q ss_pred CCCCCCEEEEcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHCCCeEEEe---ecCC-C--HH---HHHHHHHhcCEEEeC
Q 028817 79 RLNNRPVIGILSHPGDGASGRLNNSKNASYIAASYVKFVESAGARVIPL---IYNE-P--EE---ILFEKLKLVNGVLLT 149 (203)
Q Consensus 79 ~~~~rPVIGIta~~~~~~~~~~~~~~~~syI~~sYVkaVe~AGA~PV~L---P~~~-~--~e---~l~~~Ld~VDGVLLT 149 (203)
+.+...-|=|++....+ ...-.++++-=.-++..|-++-.+ ||.. + .. .=-+++=.=|
T Consensus 19 ~~~~mKyIfVTGGVvSg--------lGKGi~aaSlG~LLk~rG~~Vt~~KiDPYlNvD~GTMsP~qHGEVfVtdD----- 85 (294)
T 2c5m_A 19 YFQSMKYILVTGGVISG--------IGKGIIASSVGTILKSCGLHVTSIKIDPYINIDAGTFSPYEHGEVFVLDD----- 85 (294)
T ss_dssp --CCCEEEEEEECSSTT--------SCHHHHHHHHHHHHHTTTCCEECCEEECBCCCCC---------------------
T ss_pred eeeceEEEEEcCccccc--------cchHHHHHHHHHHHHHCCCeeEEEecCCceeecCCCCCccccceEEEecC-----
Confidence 33444567777665432 233344455444456667777665 3321 1 10 0011111112
Q ss_pred CCC-CCCCcChHH-------------HHHHHHHHHHHHhCCCCcceEeeCCccc
Q 028817 150 GGW-AKKGLYFQI-------------VEKIFKHEAIYERKKQSLVHGITGDVVQ 189 (203)
Q Consensus 150 GG~-DVdP~yY~~-------------~~~I~~~AL~~n~~g~~PV~Gic~~~~~ 189 (203)
||. |.|=-.|+. .-+||+.+++++++|++ .|.|||
T Consensus 86 G~EtDLDLGhYERFl~~~lt~~nNiTtGkIY~~VI~KERrGdY-----LGkTVQ 134 (294)
T 2c5m_A 86 GGEVDLDLGNYERFLDIRLTKDNNLTTGKIYQYVINKERKGDY-----LGKTVQ 134 (294)
T ss_dssp -------------------CCTTEEEHHHHHHHHHHHHHTSCS-----CSSCCC
T ss_pred CccccccccchhhhcCCCCcccccccHHHHHHHHHHHHhcCCc-----CCceeE
Confidence 454 676666643 46899999999999998 477887
No 303
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Probab=20.88 E-value=1.9e+02 Score=24.02 Aligned_cols=45 Identities=13% Similarity=0.115 Sum_probs=36.7
Q ss_pred hhhHHHHHHHHHCCC-eEEEeecCCCHHHHHHHHHhcCEEEeCCCC
Q 028817 108 YIAASYVKFVESAGA-RVIPLIYNEPEEILFEKLKLVNGVLLTGGW 152 (203)
Q Consensus 108 yI~~sYVkaVe~AGA-~PV~LP~~~~~e~l~~~Ld~VDGVLLTGG~ 152 (203)
++.+.-++.+.+.|. .++.+-...+.+.++++++.+|.|+-..|.
T Consensus 11 ~iG~~l~~~L~~~g~~~v~~~d~~~d~~~l~~~~~~~d~Vih~a~~ 56 (369)
T 3st7_A 11 FVGKNLKADLTSTTDHHIFEVHRQTKEEELESALLKADFIVHLAGV 56 (369)
T ss_dssp HHHHHHHHHHHHHCCCEEEECCTTCCHHHHHHHHHHCSEEEECCCS
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHhccCCEEEECCcC
Confidence 688888888888888 777765435788999999999999988764
No 304
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=20.83 E-value=1.3e+02 Score=24.79 Aligned_cols=39 Identities=10% Similarity=0.037 Sum_probs=0.0
Q ss_pred hHHHHHHHHHCCCeEEEeecCC-CHHHHHHHHHh-cCEEEeC
Q 028817 110 AASYVKFVESAGARVIPLIYNE-PEEILFEKLKL-VNGVLLT 149 (203)
Q Consensus 110 ~~sYVkaVe~AGA~PV~LP~~~-~~e~l~~~Ld~-VDGVLLT 149 (203)
.+.|+.++ ++++.++++..+. +...+..+++. +|||++|
T Consensus 58 a~~~~~~~-~~~~~~~~VRv~~~~~~~i~~~l~~g~~gI~~P 98 (256)
T 1dxe_A 58 FIPQLMAL-KGSASAPVVRVPTNEPVIIKRLLDIGFYNFLIP 98 (256)
T ss_dssp HHHHHHHT-TTCSSEEEEECSSSCHHHHHHHHHTTCCEEEES
T ss_pred HHHHHHHH-HhCCCcEEEECCCCCHHHHHHHHhcCCceeeec
No 305
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*
Probab=20.67 E-value=3.1e+02 Score=21.53 Aligned_cols=20 Identities=25% Similarity=0.200 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHHCCCeEEEe
Q 028817 108 YIAASYVKFVESAGARVIPL 127 (203)
Q Consensus 108 yI~~sYVkaVe~AGA~PV~L 127 (203)
.|....++.+.+.|+.++++
T Consensus 17 gIG~a~a~~l~~~G~~V~~~ 36 (247)
T 3rwb_A 17 GIGKAIAARLAADGATVIVS 36 (247)
T ss_dssp HHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEE
Confidence 47777777777788876654
No 306
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=20.54 E-value=1.4e+02 Score=24.40 Aligned_cols=57 Identities=18% Similarity=0.154 Sum_probs=35.3
Q ss_pred HHHHHHHHCCCeEEEeecCCCHHHHHHHHH-hcCEEEeCCCCCCCCcChHHHHHHHHHHHHH
Q 028817 112 SYVKFVESAGARVIPLIYNEPEEILFEKLK-LVNGVLLTGGWAKKGLYFQIVEKIFKHEAIY 172 (203)
Q Consensus 112 sYVkaVe~AGA~PV~LP~~~~~e~l~~~Ld-~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~ 172 (203)
.|.+.++..|+.++.++ .+.+.+++.++ ....|+++--.......+..+ |.+.+.+.
T Consensus 125 ~~~~~~~~~g~~~~~v~--~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~--l~~~~~~~ 182 (370)
T 2z61_A 125 CYKNFIRFLGAKPVFCD--FTVESLEEALSDKTKAIIINSPSNPLGEVIDRE--IYEFAYEN 182 (370)
T ss_dssp HHHHHHHHTTCEEEEEC--SSHHHHHHHCCSSEEEEEEESSCTTTCCCCCHH--HHHHHHHH
T ss_pred hHHHHHHHcCCEEEEeC--CCHHHHHHhcccCceEEEEcCCCCCcCcccCHH--HHHHHHHc
Confidence 35566788999999998 46667776664 455777764333233333333 66666654
No 307
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}
Probab=20.54 E-value=2.5e+02 Score=22.19 Aligned_cols=18 Identities=22% Similarity=0.327 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHCCCeEEE
Q 028817 109 IAASYVKFVESAGARVIP 126 (203)
Q Consensus 109 I~~sYVkaVe~AGA~PV~ 126 (203)
|....++.+.+.|+.+++
T Consensus 18 IG~aia~~l~~~G~~V~~ 35 (257)
T 3imf_A 18 MGKGMATRFAKEGARVVI 35 (257)
T ss_dssp HHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHCCCEEEE
Confidence 555555555555555444
No 308
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2
Probab=20.52 E-value=3e+02 Score=21.28 Aligned_cols=22 Identities=14% Similarity=0.446 Sum_probs=14.0
Q ss_pred CHHHHHHHHHh-------cCEEEeCCCCC
Q 028817 132 PEEILFEKLKL-------VNGVLLTGGWA 153 (203)
Q Consensus 132 ~~e~l~~~Ld~-------VDGVLLTGG~D 153 (203)
+.+.+++.++. +|.|+-..|..
T Consensus 75 ~~~~~~~~~~~~~~~~~~id~li~~Ag~~ 103 (265)
T 1h5q_A 75 NTDIVTKTIQQIDADLGPISGLIANAGVS 103 (265)
T ss_dssp CHHHHHHHHHHHHHHSCSEEEEEECCCCC
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 34455555554 88888887753
No 309
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=20.39 E-value=3.6e+02 Score=22.09 Aligned_cols=62 Identities=19% Similarity=0.178 Sum_probs=38.7
Q ss_pred HHHHHHHHCCCeEEEeecC----------CCHHHHHHHHH-hcCEEEeCCCCCCCCcCh--HHHHHHHHHHHHHH
Q 028817 112 SYVKFVESAGARVIPLIYN----------EPEEILFEKLK-LVNGVLLTGGWAKKGLYF--QIVEKIFKHEAIYE 173 (203)
Q Consensus 112 sYVkaVe~AGA~PV~LP~~----------~~~e~l~~~Ld-~VDGVLLTGG~DVdP~yY--~~~~~I~~~AL~~n 173 (203)
.|.+.++.+|+.++.++.+ .+.+.+++.++ ....|+++--.......+ +..+.|.+.+.+.+
T Consensus 138 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~ 212 (407)
T 3nra_A 138 ANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYG 212 (407)
T ss_dssp HHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred chHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhhCCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcC
Confidence 5678889999999999972 15667777665 466777754332222222 23566666665543
No 310
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2
Probab=20.38 E-value=3.3e+02 Score=21.64 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=14.1
Q ss_pred CHHHHHHHHH-------hcCEEEeCCCCC
Q 028817 132 PEEILFEKLK-------LVNGVLLTGGWA 153 (203)
Q Consensus 132 ~~e~l~~~Ld-------~VDGVLLTGG~D 153 (203)
+.+.+++.++ .+|+|+-.-|..
T Consensus 91 ~~~~v~~~~~~~~~~~g~iD~li~~Ag~~ 119 (272)
T 1yb1_A 91 NREDIYSSAKKVKAEIGDVSILVNNAGVV 119 (272)
T ss_dssp CHHHHHHHHHHHHHHTCCCSEEEECCCCC
T ss_pred CHHHHHHHHHHHHHHCCCCcEEEECCCcC
Confidence 3445555555 578888887753
No 311
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=20.30 E-value=1.2e+02 Score=26.55 Aligned_cols=35 Identities=17% Similarity=0.102 Sum_probs=29.6
Q ss_pred HHHHHCCCeEEEeecCCCHHHHHHHHHhcCEEEeC
Q 028817 115 KFVESAGARVIPLIYNEPEEILFEKLKLVNGVLLT 149 (203)
Q Consensus 115 kaVe~AGA~PV~LP~~~~~e~l~~~Ld~VDGVLLT 149 (203)
-++.++|+..|+|....+.+++..+++..+--++-
T Consensus 74 lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi 108 (509)
T 3ivr_A 74 GAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVV 108 (509)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEE
T ss_pred HHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEE
Confidence 46889999999999988999999999988765443
No 312
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=20.25 E-value=2.8e+02 Score=23.95 Aligned_cols=63 Identities=19% Similarity=0.178 Sum_probs=39.7
Q ss_pred HHHHHHHHHCCCeEEEeecCC---CHHHHHHHHH-------hcCEEE-eCCCCCCCCcCh--HHHHHHHHHHHHHH
Q 028817 111 ASYVKFVESAGARVIPLIYNE---PEEILFEKLK-------LVNGVL-LTGGWAKKGLYF--QIVEKIFKHEAIYE 173 (203)
Q Consensus 111 ~sYVkaVe~AGA~PV~LP~~~---~~e~l~~~Ld-------~VDGVL-LTGG~DVdP~yY--~~~~~I~~~AL~~n 173 (203)
..|.+.++..|+.++.+|.+. +.+.+++.++ +...|+ ++-...-....+ +..+.|.+.+.+.+
T Consensus 175 ~~~~~~~~~~g~~~~~v~~~~~g~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~ 250 (448)
T 3aow_A 175 LAALQAFNFYEPQYIQIPLDDEGMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYD 250 (448)
T ss_dssp HHHHHHHHTTCCEEEEEEEETTEECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCEEEEeccCCCCCCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcC
Confidence 356777888999999998753 5677888776 355663 443333222233 34567777776643
No 313
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=20.19 E-value=3.7e+02 Score=22.64 Aligned_cols=40 Identities=18% Similarity=0.074 Sum_probs=29.3
Q ss_pred hHHHHHHHHHCCCeEE-EeecCCCHHHHHHHHHhcCEEEeC
Q 028817 110 AASYVKFVESAGARVI-PLIYNEPEEILFEKLKLVNGVLLT 149 (203)
Q Consensus 110 ~~sYVkaVe~AGA~PV-~LP~~~~~e~l~~~Ld~VDGVLLT 149 (203)
...+++.+++.|-.++ .+.++.+.++++++.+..+|.+..
T Consensus 137 ~~~~~~~~~~~gl~~i~liaP~t~~eri~~i~~~~~gfvY~ 177 (267)
T 3vnd_A 137 SAPFSKAAKAHGIAPIFIAPPNADADTLKMVSEQGEGYTYL 177 (267)
T ss_dssp CHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCSCEEE
T ss_pred HHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCCcEEE
Confidence 4567778888887665 444445678999999999887655
No 314
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=20.19 E-value=2.4e+02 Score=22.68 Aligned_cols=20 Identities=25% Similarity=0.122 Sum_probs=12.7
Q ss_pred hhhHHHHHHHHHCCCeEEEe
Q 028817 108 YIAASYVKFVESAGARVIPL 127 (203)
Q Consensus 108 yI~~sYVkaVe~AGA~PV~L 127 (203)
.|....++.+.+.|+.++++
T Consensus 39 GIG~aia~~la~~G~~V~~~ 58 (270)
T 3ftp_A 39 GIGRAIALELARRGAMVIGT 58 (270)
T ss_dssp HHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEE
Confidence 46666666666667766554
No 315
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=20.09 E-value=3.2e+02 Score=21.35 Aligned_cols=83 Identities=14% Similarity=0.083 Sum_probs=50.9
Q ss_pred chhhhHHHHHH-HHHCCCeEEEeecCCCHHHHHHHHH--hcCEEEeCCCCCCCCcChHHHHHHHHHHHHHHhCCCCcceE
Q 028817 106 ASYIAASYVKF-VESAGARVIPLIYNEPEEILFEKLK--LVNGVLLTGGWAKKGLYFQIVEKIFKHEAIYERKKQSLVHG 182 (203)
Q Consensus 106 ~syI~~sYVka-Ve~AGA~PV~LP~~~~~e~l~~~Ld--~VDGVLLTGG~DVdP~yY~~~~~I~~~AL~~n~~g~~PV~G 182 (203)
.+-+...++.. ++.+|..++.+-.+.+.+.+.+.+. ..|.|.++.-.. ......+.+.+...++..+.+.| +.
T Consensus 100 ~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~~~~---~~~~~~~~~i~~l~~~~~~~~~~-v~ 175 (210)
T 1y80_A 100 LHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSALLT---TTMMNMKSTIDALIAAGLRDRVK-VI 175 (210)
T ss_dssp CCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEECCSG---GGTHHHHHHHHHHHHTTCGGGCE-EE
T ss_pred ccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecccc---ccHHHHHHHHHHHHhcCCCCCCe-EE
Confidence 34577888886 5778999998988777777766654 778999987543 23444555555444332111224 34
Q ss_pred eeCCcccccc
Q 028817 183 ITGDVVQKDY 192 (203)
Q Consensus 183 ic~~~~~~~~ 192 (203)
++|..+.+|+
T Consensus 176 vGG~~~~~~~ 185 (210)
T 1y80_A 176 VGGAPLSQDF 185 (210)
T ss_dssp EESTTCCHHH
T ss_pred EECCCCCHHH
Confidence 4555565554
No 316
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=20.01 E-value=1.6e+02 Score=24.34 Aligned_cols=59 Identities=12% Similarity=0.026 Sum_probs=35.2
Q ss_pred HHHHHHHCCCeEEEeecC-------CCHHHHHHHHH--hcCEEEeCCCCCCCCcCh--HHHHHHHHHHHH
Q 028817 113 YVKFVESAGARVIPLIYN-------EPEEILFEKLK--LVNGVLLTGGWAKKGLYF--QIVEKIFKHEAI 171 (203)
Q Consensus 113 YVkaVe~AGA~PV~LP~~-------~~~e~l~~~Ld--~VDGVLLTGG~DVdP~yY--~~~~~I~~~AL~ 171 (203)
|.+.++..|+.++.+|.. .+.+.+++.++ ....|+++--..-....+ +..+.|.+.+.+
T Consensus 126 ~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~ 195 (399)
T 1c7n_A 126 FFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLK 195 (399)
T ss_dssp HHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHH
Confidence 556778889999998864 35677777775 566777743222222222 234555555544
Done!