Query 028818
Match_columns 203
No_of_seqs 75 out of 77
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 03:01:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028818.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028818hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12718 Tropomyosin_1: Tropom 96.8 0.037 8.1E-07 45.1 12.2 78 35-113 6-83 (143)
2 PRK11637 AmiB activator; Provi 96.6 0.039 8.4E-07 51.0 12.5 108 11-127 17-134 (428)
3 PF08614 ATG16: Autophagy prot 96.6 0.04 8.7E-07 46.2 11.4 82 41-122 93-177 (194)
4 PRK10884 SH3 domain-containing 96.6 0.028 6E-07 48.7 10.6 69 40-115 90-158 (206)
5 COG2433 Uncharacterized conser 96.2 0.076 1.6E-06 53.1 12.5 83 40-122 426-514 (652)
6 PF06637 PV-1: PV-1 protein (P 96.2 0.12 2.6E-06 49.5 13.1 68 49-116 284-376 (442)
7 PRK11637 AmiB activator; Provi 96.2 0.12 2.7E-06 47.7 13.0 68 43-114 68-135 (428)
8 PF12329 TMF_DNA_bd: TATA elem 96.2 0.086 1.9E-06 38.9 9.5 65 54-118 2-69 (74)
9 PF08614 ATG16: Autophagy prot 96.1 0.07 1.5E-06 44.7 10.2 72 40-115 120-192 (194)
10 PF10473 CENP-F_leu_zip: Leuci 95.9 0.55 1.2E-05 38.9 14.2 84 40-127 21-111 (140)
11 PF11559 ADIP: Afadin- and alp 95.9 0.21 4.6E-06 39.9 11.4 30 52-81 75-104 (151)
12 PRK09039 hypothetical protein; 95.8 0.2 4.4E-06 45.9 12.3 88 40-127 113-204 (343)
13 COG1579 Zn-ribbon protein, pos 95.3 0.37 8E-06 43.0 11.8 21 40-60 56-76 (239)
14 PF11559 ADIP: Afadin- and alp 95.2 0.34 7.4E-06 38.8 10.4 68 46-117 55-122 (151)
15 COG1579 Zn-ribbon protein, pos 95.1 0.81 1.7E-05 40.9 13.3 72 45-116 33-116 (239)
16 PHA02562 46 endonuclease subun 95.0 0.54 1.2E-05 43.9 12.7 97 19-115 142-246 (562)
17 PF10186 Atg14: UV radiation r 95.0 0.81 1.8E-05 38.9 12.8 85 42-126 62-153 (302)
18 PF05700 BCAS2: Breast carcino 94.9 1.6 3.5E-05 37.5 14.4 90 30-119 123-212 (221)
19 PRK03918 chromosome segregatio 94.8 1.3 2.8E-05 43.8 15.1 93 22-114 155-263 (880)
20 PF09755 DUF2046: Uncharacteri 94.7 0.89 1.9E-05 42.2 13.0 87 39-129 109-204 (310)
21 PF04156 IncA: IncA protein; 94.5 1.4 3E-05 36.1 12.5 80 40-119 85-167 (191)
22 PF03148 Tektin: Tektin family 94.2 2.4 5.3E-05 39.4 14.9 96 30-125 238-353 (384)
23 PF12718 Tropomyosin_1: Tropom 94.2 1.2 2.7E-05 36.3 11.5 76 40-115 39-127 (143)
24 PRK02224 chromosome segregatio 94.2 1.7 3.7E-05 43.2 14.6 13 25-37 147-159 (880)
25 PF08647 BRE1: BRE1 E3 ubiquit 94.2 1.9 4.2E-05 32.8 11.8 79 45-127 5-90 (96)
26 TIGR03185 DNA_S_dndD DNA sulfu 93.9 1.5 3.3E-05 42.9 13.5 43 39-81 394-438 (650)
27 PHA02562 46 endonuclease subun 93.8 0.93 2E-05 42.4 11.4 38 42-79 336-373 (562)
28 KOG3990 Uncharacterized conser 93.7 0.31 6.7E-06 44.7 7.7 34 45-78 227-260 (305)
29 PRK10884 SH3 domain-containing 93.7 1.1 2.4E-05 38.8 10.9 66 40-112 97-162 (206)
30 PF09789 DUF2353: Uncharacteri 93.6 0.92 2E-05 42.1 10.8 72 40-115 90-180 (319)
31 KOG0288 WD40 repeat protein Ti 93.6 1.1 2.3E-05 43.6 11.4 71 54-128 31-101 (459)
32 PF14197 Cep57_CLD_2: Centroso 93.5 1.4 3.1E-05 32.3 9.6 58 47-105 2-63 (69)
33 PF04111 APG6: Autophagy prote 93.4 1.7 3.6E-05 39.6 11.9 77 40-116 47-133 (314)
34 KOG0977 Nuclear envelope prote 93.3 1.8 4E-05 42.9 12.8 83 31-113 95-193 (546)
35 TIGR02169 SMC_prok_A chromosom 93.2 1.9 4.1E-05 43.2 13.0 18 94-111 901-918 (1164)
36 PF11180 DUF2968: Protein of u 93.1 2.1 4.5E-05 37.4 11.5 75 43-117 105-182 (192)
37 PF09726 Macoilin: Transmembra 93.0 1.2 2.6E-05 45.0 11.3 39 37-75 539-577 (697)
38 PF00261 Tropomyosin: Tropomyo 93.0 2 4.3E-05 37.1 11.4 53 29-81 100-158 (237)
39 PF04156 IncA: IncA protein; 92.9 3.3 7.2E-05 33.8 12.0 41 41-81 100-140 (191)
40 PF13851 GAS: Growth-arrest sp 92.8 5.6 0.00012 34.1 13.7 77 40-116 45-127 (201)
41 COG4026 Uncharacterized protei 92.6 3.2 6.8E-05 37.9 12.4 84 29-116 104-197 (290)
42 PF15619 Lebercilin: Ciliary p 92.6 1.3 2.9E-05 38.0 9.6 61 46-106 121-188 (194)
43 PF13870 DUF4201: Domain of un 92.5 5.1 0.00011 32.9 13.4 46 25-74 42-87 (177)
44 PF08317 Spc7: Spc7 kinetochor 92.5 3.2 7E-05 37.5 12.5 28 100-127 234-261 (325)
45 PF04899 MbeD_MobD: MbeD/MobD 92.5 2.5 5.5E-05 31.3 9.7 35 82-116 35-69 (70)
46 KOG2685 Cystoskeletal protein 92.4 6.6 0.00014 38.0 14.8 97 28-124 263-379 (421)
47 PF08172 CASP_C: CASP C termin 92.1 1.8 4E-05 38.5 10.3 84 46-129 2-139 (248)
48 TIGR03017 EpsF chain length de 92.0 2.2 4.8E-05 38.9 10.9 90 40-129 258-368 (444)
49 KOG0161 Myosin class II heavy 92.0 2.3 5.1E-05 47.5 12.8 90 38-127 1317-1417(1930)
50 PF12325 TMF_TATA_bd: TATA ele 92.0 4.1 8.9E-05 32.8 11.2 20 105-124 98-117 (120)
51 PF07888 CALCOCO1: Calcium bin 91.9 4.8 0.0001 40.0 13.7 89 17-105 130-236 (546)
52 smart00787 Spc7 Spc7 kinetocho 91.8 3.5 7.6E-05 37.8 11.9 30 52-81 206-235 (312)
53 PF00038 Filament: Intermediat 91.7 8.5 0.00018 33.6 14.5 72 51-122 217-295 (312)
54 PF07106 TBPIP: Tat binding pr 91.7 1.1 2.5E-05 36.5 7.9 32 49-80 78-109 (169)
55 PF15070 GOLGA2L5: Putative go 91.6 6.4 0.00014 39.4 14.3 76 40-115 26-113 (617)
56 PRK02224 chromosome segregatio 91.6 4.6 0.0001 40.2 13.4 12 25-36 162-173 (880)
57 COG4942 Membrane-bound metallo 91.5 2.4 5.3E-05 40.8 11.0 39 43-81 38-76 (420)
58 KOG0994 Extracellular matrix g 91.5 1.2 2.5E-05 48.3 9.4 77 40-116 1198-1294(1758)
59 PF05266 DUF724: Protein of un 91.3 5.7 0.00012 34.1 12.0 99 14-116 55-179 (190)
60 KOG4010 Coiled-coil protein TP 91.2 0.4 8.7E-06 42.2 4.9 35 40-74 48-82 (208)
61 TIGR03752 conj_TIGR03752 integ 91.2 2.4 5.2E-05 41.4 10.6 70 41-110 64-137 (472)
62 PF08317 Spc7: Spc7 kinetochor 91.2 7 0.00015 35.4 13.1 21 40-60 181-201 (325)
63 PF13851 GAS: Growth-arrest sp 91.1 7 0.00015 33.5 12.4 85 40-124 59-149 (201)
64 KOG2129 Uncharacterized conser 91.0 10 0.00022 37.3 14.6 85 37-124 202-317 (552)
65 PF05911 DUF869: Plant protein 90.9 3.6 7.8E-05 42.3 12.1 88 35-123 10-112 (769)
66 PF03962 Mnd1: Mnd1 family; I 90.7 5.4 0.00012 33.9 11.2 30 47-76 66-95 (188)
67 PF10146 zf-C4H2: Zinc finger- 90.6 4.5 9.8E-05 35.8 11.0 41 92-132 70-111 (230)
68 PF09726 Macoilin: Transmembra 90.6 1.6 3.5E-05 44.1 9.2 84 47-130 422-515 (697)
69 KOG0994 Extracellular matrix g 90.6 8.4 0.00018 42.2 14.6 111 14-124 1497-1637(1758)
70 KOG0804 Cytoplasmic Zn-finger 90.6 6 0.00013 38.9 12.7 85 28-116 328-430 (493)
71 smart00787 Spc7 Spc7 kinetocho 90.5 6.7 0.00014 36.0 12.4 77 41-128 177-257 (312)
72 KOG3433 Protein involved in me 90.5 2.5 5.4E-05 37.3 9.1 73 40-123 78-150 (203)
73 PF10224 DUF2205: Predicted co 90.4 1.6 3.5E-05 33.2 7.0 41 71-111 23-66 (80)
74 PF10186 Atg14: UV radiation r 90.1 11 0.00024 32.1 14.1 82 40-121 67-151 (302)
75 PF14362 DUF4407: Domain of un 90.1 13 0.00028 32.8 14.1 83 48-130 133-238 (301)
76 PF10168 Nup88: Nuclear pore c 90.0 5.8 0.00013 40.2 12.6 64 39-106 561-624 (717)
77 TIGR01843 type_I_hlyD type I s 90.0 13 0.00029 32.9 14.0 42 39-80 140-181 (423)
78 TIGR03185 DNA_S_dndD DNA sulfu 90.0 11 0.00024 37.0 14.2 68 14-81 171-247 (650)
79 TIGR03007 pepcterm_ChnLen poly 89.9 4.1 8.9E-05 38.0 10.7 41 40-80 251-291 (498)
80 PF06005 DUF904: Protein of un 89.6 6.8 0.00015 29.0 9.8 23 86-108 43-65 (72)
81 PF12777 MT: Microtubule-bindi 89.6 2.6 5.6E-05 38.4 9.0 58 42-103 220-277 (344)
82 PF14197 Cep57_CLD_2: Centroso 89.6 3.3 7.2E-05 30.4 7.9 55 63-121 4-62 (69)
83 TIGR00606 rad50 rad50. This fa 89.6 4.6 0.0001 42.9 11.9 75 40-114 1002-1086(1311)
84 PF15070 GOLGA2L5: Putative go 89.5 5.9 0.00013 39.6 12.1 86 40-129 47-151 (617)
85 PF07888 CALCOCO1: Calcium bin 89.5 7.4 0.00016 38.7 12.6 81 43-123 143-233 (546)
86 PF00769 ERM: Ezrin/radixin/mo 89.4 7.2 0.00016 34.4 11.3 78 40-117 9-96 (246)
87 PF13870 DUF4201: Domain of un 89.3 11 0.00024 31.0 11.9 79 46-124 45-126 (177)
88 TIGR01005 eps_transp_fam exopo 89.2 3.7 8.1E-05 40.5 10.4 28 102-129 375-402 (754)
89 KOG0161 Myosin class II heavy 89.2 5.7 0.00012 44.7 12.6 89 28-116 1696-1792(1930)
90 PF09730 BicD: Microtubule-ass 89.2 6.3 0.00014 40.3 12.1 89 40-129 31-136 (717)
91 TIGR02231 conserved hypothetic 89.0 5.2 0.00011 38.1 10.9 78 40-117 68-166 (525)
92 COG1196 Smc Chromosome segrega 89.0 7.6 0.00017 40.8 12.9 24 92-115 887-910 (1163)
93 KOG0250 DNA repair protein RAD 88.8 5.4 0.00012 42.5 11.7 34 92-125 390-423 (1074)
94 COG5185 HEC1 Protein involved 88.8 11 0.00023 37.8 12.9 73 40-112 320-398 (622)
95 PF09798 LCD1: DNA damage chec 88.6 2.3 5.1E-05 42.9 8.6 56 55-110 2-61 (654)
96 COG1196 Smc Chromosome segrega 88.5 12 0.00026 39.4 14.0 40 85-124 442-481 (1163)
97 TIGR00606 rad50 rad50. This fa 88.4 11 0.00023 40.2 13.7 52 30-81 874-926 (1311)
98 KOG0995 Centromere-associated 88.4 8.1 0.00018 38.8 12.0 42 40-81 284-325 (581)
99 PRK09039 hypothetical protein; 88.1 6.1 0.00013 36.4 10.4 9 72-80 117-125 (343)
100 PF14662 CCDC155: Coiled-coil 88.0 8.3 0.00018 33.8 10.6 64 46-109 63-129 (193)
101 PF10805 DUF2730: Protein of u 87.9 2.9 6.4E-05 32.5 7.1 22 91-112 74-95 (106)
102 PF00038 Filament: Intermediat 87.9 13 0.00029 32.4 12.0 20 41-60 16-35 (312)
103 KOG0963 Transcription factor/C 87.9 6.6 0.00014 39.7 11.1 73 43-115 249-329 (629)
104 KOG1962 B-cell receptor-associ 87.8 3.2 6.9E-05 36.8 8.0 71 41-115 119-198 (216)
105 PF15290 Syntaphilin: Golgi-lo 87.8 9.1 0.0002 35.7 11.2 100 26-130 62-180 (305)
106 PF10205 KLRAQ: Predicted coil 87.8 9.7 0.00021 30.4 10.0 65 48-113 3-71 (102)
107 PF10174 Cast: RIM-binding pro 87.7 10 0.00022 39.1 12.6 72 40-111 333-414 (775)
108 KOG0995 Centromere-associated 87.7 19 0.00042 36.2 14.1 88 40-131 256-367 (581)
109 PF10205 KLRAQ: Predicted coil 87.7 12 0.00026 29.9 10.4 23 55-77 31-53 (102)
110 COG4026 Uncharacterized protei 87.7 5.1 0.00011 36.6 9.4 76 40-119 139-214 (290)
111 PF12325 TMF_TATA_bd: TATA ele 87.7 13 0.00029 29.9 12.9 72 53-128 19-93 (120)
112 PF11544 Spc42p: Spindle pole 87.6 8.8 0.00019 29.2 9.2 52 48-103 3-54 (76)
113 PF05377 FlaC_arch: Flagella a 87.5 2.8 6.1E-05 30.1 6.2 38 66-107 2-39 (55)
114 PRK02119 hypothetical protein; 87.3 4.5 9.7E-05 29.8 7.4 29 100-128 27-55 (73)
115 PF11932 DUF3450: Protein of u 87.3 19 0.0004 31.2 13.7 40 42-81 41-80 (251)
116 KOG0249 LAR-interacting protei 87.2 11 0.00023 39.3 12.3 73 52-124 165-251 (916)
117 COG4942 Membrane-bound metallo 87.2 11 0.00025 36.4 11.9 68 50-121 38-105 (420)
118 PF15619 Lebercilin: Ciliary p 86.9 12 0.00025 32.3 10.8 43 39-81 57-99 (194)
119 PF06810 Phage_GP20: Phage min 86.8 9 0.0002 31.7 9.8 32 40-71 17-48 (155)
120 PF04201 TPD52: Tumour protein 86.7 13 0.00027 31.9 10.7 35 39-73 32-66 (162)
121 KOG4674 Uncharacterized conser 86.5 5.9 0.00013 44.3 10.7 54 46-99 1310-1363(1822)
122 PF09744 Jnk-SapK_ap_N: JNK_SA 86.4 18 0.0004 30.3 12.1 80 40-119 47-126 (158)
123 PF04102 SlyX: SlyX; InterPro 86.4 5.1 0.00011 28.9 7.2 31 100-130 22-52 (69)
124 PF10174 Cast: RIM-binding pro 86.3 8.7 0.00019 39.6 11.3 65 33-104 277-351 (775)
125 TIGR03017 EpsF chain length de 86.2 16 0.00035 33.4 12.0 16 45-60 284-299 (444)
126 PF10473 CENP-F_leu_zip: Leuci 86.2 15 0.00033 30.4 10.8 70 41-113 64-136 (140)
127 PF11068 YlqD: YlqD protein; 86.1 9.7 0.00021 31.1 9.4 62 62-127 18-84 (131)
128 KOG4398 Predicted coiled-coil 86.0 5.6 0.00012 37.3 8.9 82 41-126 3-88 (359)
129 PF10779 XhlA: Haemolysin XhlA 85.9 4.8 0.0001 29.0 6.8 46 68-117 3-48 (71)
130 PF02050 FliJ: Flagellar FliJ 85.7 11 0.00024 27.1 13.0 81 40-124 16-101 (123)
131 PRK04406 hypothetical protein; 85.6 6.9 0.00015 29.1 7.7 16 66-81 6-21 (75)
132 PF05278 PEARLI-4: Arabidopsis 85.6 12 0.00026 34.2 10.7 64 51-114 194-260 (269)
133 PRK12704 phosphodiesterase; Pr 85.6 30 0.00066 33.8 14.1 12 118-129 155-166 (520)
134 PF05529 Bap31: B-cell recepto 85.5 3.7 8.1E-05 34.0 7.0 68 40-111 122-190 (192)
135 PF14817 HAUS5: HAUS augmin-li 85.4 17 0.00037 36.7 12.6 78 44-121 80-167 (632)
136 PF10805 DUF2730: Protein of u 85.4 9.3 0.0002 29.7 8.7 31 88-118 64-94 (106)
137 TIGR03319 YmdA_YtgF conserved 85.3 32 0.00069 33.6 14.1 12 118-129 149-160 (514)
138 KOG2991 Splicing regulator [RN 85.3 5.7 0.00012 36.9 8.5 71 36-106 229-309 (330)
139 TIGR01005 eps_transp_fam exopo 85.2 11 0.00024 37.3 11.0 17 44-60 317-333 (754)
140 PF15035 Rootletin: Ciliary ro 85.0 8.3 0.00018 32.9 8.9 21 95-115 94-114 (182)
141 PF05911 DUF869: Plant protein 85.0 7.9 0.00017 39.9 10.2 61 41-101 97-160 (769)
142 PRK02793 phi X174 lysis protei 85.0 6.9 0.00015 28.7 7.4 26 103-128 29-54 (72)
143 TIGR02680 conserved hypothetic 84.8 11 0.00023 40.7 11.5 42 40-81 739-780 (1353)
144 PF11932 DUF3450: Protein of u 84.8 25 0.00055 30.4 12.6 53 28-81 21-73 (251)
145 PF08826 DMPK_coil: DMPK coile 84.6 13 0.00028 26.9 9.2 56 46-109 4-59 (61)
146 PF12329 TMF_DNA_bd: TATA elem 84.5 7.8 0.00017 28.5 7.5 35 84-118 14-48 (74)
147 PRK13729 conjugal transfer pil 84.4 4.7 0.0001 39.5 8.0 48 58-105 70-120 (475)
148 COG3883 Uncharacterized protei 84.4 9.9 0.00022 34.7 9.6 28 88-115 65-92 (265)
149 PF11594 Med28: Mediator compl 84.3 8.8 0.00019 30.8 8.2 52 30-81 14-73 (106)
150 PF06156 DUF972: Protein of un 84.2 9.9 0.00021 30.0 8.4 26 85-110 32-57 (107)
151 PF10211 Ax_dynein_light: Axon 84.2 11 0.00023 32.1 9.2 24 94-117 161-184 (189)
152 PF13863 DUF4200: Domain of un 84.1 17 0.00036 27.8 13.4 55 68-122 43-100 (126)
153 COG2433 Uncharacterized conser 84.1 19 0.00042 36.6 12.2 83 41-124 420-506 (652)
154 PF04111 APG6: Autophagy prote 84.0 30 0.00065 31.6 12.6 71 41-111 41-114 (314)
155 KOG0962 DNA repair protein RAD 84.0 13 0.00028 40.6 11.5 80 39-124 1011-1096(1294)
156 KOG4673 Transcription factor T 83.9 11 0.00024 39.2 10.6 38 44-81 496-533 (961)
157 PF10146 zf-C4H2: Zinc finger- 83.9 30 0.00066 30.6 13.9 52 60-115 46-100 (230)
158 PF05667 DUF812: Protein of un 83.9 15 0.00033 36.7 11.4 41 41-81 340-380 (594)
159 TIGR00634 recN DNA repair prot 83.8 8.9 0.00019 37.0 9.6 46 83-128 340-390 (563)
160 KOG0288 WD40 repeat protein Ti 83.7 22 0.00049 34.8 12.1 36 46-81 37-72 (459)
161 PF09787 Golgin_A5: Golgin sub 83.7 4.6 9.9E-05 38.8 7.6 72 37-112 356-429 (511)
162 PF10158 LOH1CR12: Tumour supp 83.7 17 0.00037 29.6 9.8 56 17-74 19-87 (131)
163 KOG4687 Uncharacterized coiled 83.7 5.5 0.00012 37.4 7.8 87 40-127 20-114 (389)
164 KOG4643 Uncharacterized coiled 83.6 9.3 0.0002 41.0 10.2 67 38-108 172-238 (1195)
165 PF10168 Nup88: Nuclear pore c 83.6 12 0.00026 38.0 10.8 51 53-103 546-600 (717)
166 TIGR01000 bacteriocin_acc bact 83.5 14 0.0003 34.6 10.5 66 44-112 237-314 (457)
167 TIGR00634 recN DNA repair prot 83.5 4.5 9.7E-05 39.0 7.5 57 25-81 142-199 (563)
168 PRK10803 tol-pal system protei 83.5 11 0.00023 33.4 9.3 63 49-115 39-101 (263)
169 KOG0980 Actin-binding protein 83.4 34 0.00073 36.4 13.9 41 84-124 454-505 (980)
170 COG3883 Uncharacterized protei 83.0 16 0.00035 33.4 10.3 23 86-108 77-99 (265)
171 PF13747 DUF4164: Domain of un 83.0 17 0.00037 27.7 9.0 25 83-107 54-78 (89)
172 PF12240 Angiomotin_C: Angiomo 82.6 34 0.00075 30.3 13.5 80 52-131 59-171 (205)
173 PF03962 Mnd1: Mnd1 family; I 82.6 11 0.00024 32.1 8.7 30 40-69 66-95 (188)
174 PF07926 TPR_MLP1_2: TPR/MLP1/ 82.6 22 0.00049 28.1 10.2 30 52-81 61-90 (132)
175 PRK00846 hypothetical protein; 82.5 9.7 0.00021 28.8 7.4 26 103-128 34-59 (77)
176 PF04100 Vps53_N: Vps53-like, 82.5 17 0.00037 34.0 10.6 25 102-126 84-108 (383)
177 PF04012 PspA_IM30: PspA/IM30 82.3 29 0.00062 29.2 14.9 99 24-125 22-127 (221)
178 TIGR02559 HrpB7 type III secre 82.3 26 0.00057 29.9 10.7 64 37-100 80-149 (158)
179 PRK04863 mukB cell division pr 82.2 22 0.00048 39.1 12.7 21 40-60 318-338 (1486)
180 PF06818 Fez1: Fez1; InterPro 82.1 14 0.00031 32.5 9.3 68 50-117 31-101 (202)
181 PRK10361 DNA recombination pro 82.0 30 0.00065 34.0 12.4 76 51-126 68-160 (475)
182 KOG1899 LAR transmembrane tyro 81.6 21 0.00045 36.9 11.4 85 40-124 228-319 (861)
183 PF07106 TBPIP: Tat binding pr 81.5 11 0.00024 30.7 8.1 42 40-81 90-133 (169)
184 PF09486 HrpB7: Bacterial type 81.5 14 0.00031 31.2 8.8 43 39-81 82-124 (158)
185 TIGR03495 phage_LysB phage lys 81.5 15 0.00034 30.3 8.9 29 52-80 21-49 (135)
186 PRK01156 chromosome segregatio 81.4 26 0.00056 35.4 12.1 13 92-104 698-710 (895)
187 KOG0971 Microtubule-associated 81.4 7.7 0.00017 41.3 8.6 31 44-74 411-441 (1243)
188 PF02994 Transposase_22: L1 tr 81.4 3.8 8.3E-05 38.1 5.9 33 41-73 103-135 (370)
189 PRK00295 hypothetical protein; 81.3 15 0.00032 26.7 7.8 15 66-80 7-21 (68)
190 TIGR01000 bacteriocin_acc bact 81.2 46 0.001 31.2 13.0 39 40-78 162-200 (457)
191 PF06120 Phage_HK97_TLTM: Tail 81.1 45 0.00098 30.9 12.6 74 48-121 72-163 (301)
192 PRK10803 tol-pal system protei 81.1 8.8 0.00019 34.0 7.9 61 40-100 37-100 (263)
193 PF06005 DUF904: Protein of un 81.1 20 0.00043 26.5 9.7 13 96-108 39-51 (72)
194 COG1322 Predicted nuclease of 81.1 50 0.0011 32.1 13.5 15 115-129 141-155 (448)
195 PRK00106 hypothetical protein; 81.0 58 0.0013 32.4 14.1 12 118-129 170-181 (535)
196 PRK01156 chromosome segregatio 81.0 34 0.00074 34.5 12.8 18 106-123 729-746 (895)
197 PF14932 HAUS-augmin3: HAUS au 81.0 35 0.00076 30.0 11.5 39 43-81 68-106 (256)
198 KOG4005 Transcription factor X 80.8 25 0.00053 32.5 10.7 81 42-126 58-145 (292)
199 KOG0996 Structural maintenance 80.8 19 0.0004 39.2 11.2 81 21-101 772-877 (1293)
200 PF09304 Cortex-I_coil: Cortex 80.6 15 0.00032 29.7 8.2 44 38-81 11-54 (107)
201 PF04977 DivIC: Septum formati 80.6 11 0.00025 26.2 6.9 35 86-120 28-62 (80)
202 PRK04778 septation ring format 80.5 31 0.00067 33.6 12.0 49 82-130 317-375 (569)
203 TIGR01843 type_I_hlyD type I s 80.5 41 0.0009 29.8 15.4 42 40-81 134-175 (423)
204 PF08647 BRE1: BRE1 E3 ubiquit 80.4 23 0.00051 26.9 9.8 35 47-81 28-62 (96)
205 PF10234 Cluap1: Clusterin-ass 80.3 27 0.00059 31.8 10.8 66 49-114 143-208 (267)
206 PF04849 HAP1_N: HAP1 N-termin 80.3 44 0.00096 31.2 12.3 85 31-115 155-253 (306)
207 KOG0971 Microtubule-associated 80.1 51 0.0011 35.6 13.8 85 44-128 956-1051(1243)
208 PF05278 PEARLI-4: Arabidopsis 80.1 34 0.00073 31.4 11.3 64 42-109 199-262 (269)
209 KOG3119 Basic region leucine z 79.9 9.5 0.00021 34.1 7.7 77 52-128 181-261 (269)
210 PF04977 DivIC: Septum formati 79.7 11 0.00024 26.2 6.6 30 45-74 19-48 (80)
211 PF10046 BLOC1_2: Biogenesis o 79.6 25 0.00055 26.8 9.9 62 40-116 32-93 (99)
212 PRK12705 hypothetical protein; 79.5 33 0.00072 33.8 11.8 13 118-130 143-155 (508)
213 PF05622 HOOK: HOOK protein; 79.5 0.59 1.3E-05 46.3 0.0 20 42-61 307-326 (713)
214 TIGR02132 phaR_Bmeg polyhydrox 79.4 25 0.00054 30.9 9.8 42 40-81 76-124 (189)
215 KOG4552 Vitamin-D-receptor int 79.3 12 0.00026 33.9 8.1 37 45-81 69-105 (272)
216 PRK04863 mukB cell division pr 79.3 34 0.00073 37.8 12.8 75 47-121 352-429 (1486)
217 PRK00888 ftsB cell division pr 79.2 11 0.00024 29.3 7.1 43 86-128 38-80 (105)
218 TIGR01010 BexC_CtrB_KpsE polys 79.1 18 0.00039 32.6 9.3 80 43-129 214-304 (362)
219 KOG0244 Kinesin-like protein [ 79.0 13 0.00027 39.3 9.2 91 40-131 513-607 (913)
220 PF06698 DUF1192: Protein of u 79.0 3.2 6.9E-05 30.0 3.7 28 40-67 25-52 (59)
221 PF02601 Exonuc_VII_L: Exonucl 78.9 46 0.001 29.4 13.0 54 28-81 150-208 (319)
222 PF05384 DegS: Sensor protein 78.9 35 0.00075 28.8 10.3 79 40-119 45-128 (159)
223 smart00338 BRLZ basic region l 78.7 19 0.00042 25.0 7.7 25 92-116 36-60 (65)
224 KOG0996 Structural maintenance 78.7 10 0.00022 41.1 8.6 33 82-114 907-939 (1293)
225 PF06476 DUF1090: Protein of u 78.4 19 0.00042 28.7 8.3 50 29-81 32-87 (115)
226 PRK13169 DNA replication intia 78.4 20 0.00043 28.7 8.3 23 86-108 33-55 (110)
227 PRK04325 hypothetical protein; 78.4 13 0.00028 27.4 6.8 28 101-128 28-55 (74)
228 KOG0933 Structural maintenance 78.2 19 0.00042 38.7 10.3 39 84-122 887-925 (1174)
229 PRK04778 septation ring format 78.2 27 0.00058 34.1 10.8 10 115-124 427-436 (569)
230 KOG0250 DNA repair protein RAD 78.2 32 0.0007 37.0 12.0 69 40-108 348-420 (1074)
231 PF05529 Bap31: B-cell recepto 78.2 27 0.00057 29.0 9.4 68 41-121 116-183 (192)
232 KOG0999 Microtubule-associated 78.1 17 0.00037 37.1 9.5 37 40-76 104-140 (772)
233 KOG4674 Uncharacterized conser 78.0 23 0.0005 39.9 11.2 73 40-115 802-877 (1822)
234 PF09789 DUF2353: Uncharacteri 78.0 16 0.00034 34.2 8.7 75 40-114 76-151 (319)
235 PF15035 Rootletin: Ciliary ro 78.0 30 0.00066 29.5 9.8 33 83-115 68-107 (182)
236 PRK00736 hypothetical protein; 77.9 19 0.00042 26.1 7.5 15 66-80 7-21 (68)
237 KOG1962 B-cell receptor-associ 77.9 23 0.0005 31.5 9.4 56 46-105 154-209 (216)
238 smart00338 BRLZ basic region l 77.8 13 0.00028 25.9 6.4 39 61-103 23-61 (65)
239 PF02841 GBP_C: Guanylate-bind 77.6 36 0.00078 30.3 10.6 72 47-121 187-258 (297)
240 PF01576 Myosin_tail_1: Myosin 77.6 0.73 1.6E-05 47.1 0.0 89 39-127 260-359 (859)
241 TIGR03007 pepcterm_ChnLen poly 77.4 63 0.0014 30.2 13.2 53 21-73 128-191 (498)
242 PF09728 Taxilin: Myosin-like 77.4 58 0.0013 29.8 12.8 79 44-122 203-305 (309)
243 PRK12704 phosphodiesterase; Pr 77.3 76 0.0017 31.1 14.2 35 93-127 111-145 (520)
244 PF12240 Angiomotin_C: Angiomo 77.3 3.5 7.6E-05 36.4 4.1 32 41-72 134-165 (205)
245 PF05377 FlaC_arch: Flagella a 77.0 9.5 0.00021 27.4 5.5 36 45-80 2-37 (55)
246 PF05010 TACC: Transforming ac 76.8 49 0.0011 29.0 11.0 66 48-113 21-93 (207)
247 PF14282 FlxA: FlxA-like prote 76.8 17 0.00037 28.2 7.4 59 63-122 18-77 (106)
248 PRK02793 phi X174 lysis protei 76.7 15 0.00033 26.9 6.7 27 86-112 26-52 (72)
249 KOG4643 Uncharacterized coiled 76.3 33 0.00071 37.1 11.3 77 45-121 504-593 (1195)
250 PF06246 Isy1: Isy1-like splic 76.3 14 0.00029 33.4 7.6 58 52-109 39-98 (255)
251 PRK10869 recombination and rep 76.2 15 0.00032 35.9 8.5 58 24-81 137-195 (553)
252 PF08898 DUF1843: Domain of un 76.2 10 0.00022 27.2 5.4 36 82-117 17-52 (53)
253 TIGR00020 prfB peptide chain r 75.8 60 0.0013 30.7 12.1 86 31-116 11-112 (364)
254 PF04582 Reo_sigmaC: Reovirus 75.8 6.9 0.00015 36.7 5.8 77 40-116 53-139 (326)
255 PF08700 Vps51: Vps51/Vps67; 75.7 26 0.00057 25.0 9.8 60 52-115 24-84 (87)
256 PRK00286 xseA exodeoxyribonucl 75.5 70 0.0015 29.8 12.9 53 29-81 268-322 (438)
257 PF13874 Nup54: Nucleoporin co 75.3 23 0.0005 28.5 8.0 31 40-70 34-64 (141)
258 PF00170 bZIP_1: bZIP transcri 75.2 25 0.00054 24.4 9.6 21 61-81 23-43 (64)
259 PF13864 Enkurin: Calmodulin-b 75.2 7.6 0.00016 29.5 5.0 56 60-117 40-95 (98)
260 PRK04406 hypothetical protein; 75.1 27 0.00058 26.0 7.7 43 64-110 11-53 (75)
261 PF10234 Cluap1: Clusterin-ass 75.0 44 0.00095 30.5 10.6 22 40-61 166-187 (267)
262 PRK00409 recombination and DNA 74.8 76 0.0016 32.6 13.3 50 31-81 505-554 (782)
263 PF11802 CENP-K: Centromere-as 74.8 70 0.0015 29.4 12.4 25 105-129 156-180 (268)
264 PRK04325 hypothetical protein; 74.6 25 0.00054 25.9 7.4 41 66-110 11-51 (74)
265 PF13514 AAA_27: AAA domain 74.4 39 0.00084 35.4 11.4 61 62-122 148-214 (1111)
266 KOG0612 Rho-associated, coiled 74.4 36 0.00078 37.3 11.2 49 83-131 617-665 (1317)
267 PF02388 FemAB: FemAB family; 74.3 24 0.00053 32.9 9.0 53 66-119 244-296 (406)
268 PF05781 MRVI1: MRVI1 protein; 74.1 93 0.002 31.3 13.3 98 26-124 196-324 (538)
269 TIGR02231 conserved hypothetic 73.9 57 0.0012 31.1 11.5 38 82-119 138-175 (525)
270 TIGR03319 YmdA_YtgF conserved 73.8 94 0.002 30.4 14.0 35 92-126 104-138 (514)
271 KOG1103 Predicted coiled-coil 73.5 16 0.00034 35.6 7.7 76 42-120 219-300 (561)
272 TIGR00237 xseA exodeoxyribonuc 73.5 84 0.0018 29.8 13.0 52 29-80 263-316 (432)
273 PF06657 Cep57_MT_bd: Centroso 73.4 24 0.00052 26.4 7.2 64 39-109 13-77 (79)
274 PF14389 Lzipper-MIP1: Leucine 73.0 20 0.00044 27.1 6.8 67 41-114 6-79 (88)
275 PF09304 Cortex-I_coil: Cortex 72.7 49 0.0011 26.7 11.2 34 48-81 42-75 (107)
276 PF14257 DUF4349: Domain of un 72.7 16 0.00036 31.5 7.1 15 44-58 140-154 (262)
277 COG1570 XseA Exonuclease VII, 72.6 97 0.0021 30.3 12.8 72 10-81 236-323 (440)
278 TIGR02680 conserved hypothetic 72.6 51 0.0011 35.8 11.9 68 43-110 882-956 (1353)
279 PF02183 HALZ: Homeobox associ 72.3 20 0.00043 24.4 5.9 27 86-112 16-42 (45)
280 PF11855 DUF3375: Protein of u 72.3 34 0.00073 32.9 9.7 96 39-135 118-221 (478)
281 PRK08032 fliD flagellar cappin 72.2 48 0.001 31.6 10.6 57 41-104 404-460 (462)
282 COG4372 Uncharacterized protei 72.0 46 0.001 32.7 10.4 70 45-118 212-281 (499)
283 PF10481 CENP-F_N: Cenp-F N-te 71.7 25 0.00053 32.9 8.2 63 43-112 18-90 (307)
284 KOG0406 Glutathione S-transfer 71.6 19 0.00041 32.2 7.3 57 19-81 87-146 (231)
285 PF03961 DUF342: Protein of un 71.6 49 0.0011 31.1 10.4 27 89-115 375-401 (451)
286 KOG4074 Leucine zipper nuclear 71.6 45 0.00098 31.8 10.0 73 42-114 136-209 (383)
287 TIGR01554 major_cap_HK97 phage 71.2 29 0.00062 31.6 8.6 8 115-122 86-93 (378)
288 KOG4687 Uncharacterized coiled 71.2 71 0.0015 30.3 11.1 57 65-124 52-129 (389)
289 KOG0980 Actin-binding protein 71.0 54 0.0012 35.0 11.3 10 95-104 535-544 (980)
290 COG3879 Uncharacterized protei 70.9 28 0.0006 31.6 8.3 26 47-72 54-79 (247)
291 KOG0977 Nuclear envelope prote 70.9 44 0.00095 33.5 10.3 28 49-76 91-118 (546)
292 TIGR00618 sbcc exonuclease Sbc 70.9 1.3E+02 0.0027 31.5 14.0 25 98-122 262-286 (1042)
293 PF04102 SlyX: SlyX; InterPro 70.8 23 0.0005 25.5 6.4 28 86-113 22-49 (69)
294 COG1842 PspA Phage shock prote 70.3 77 0.0017 28.0 10.9 39 42-80 91-129 (225)
295 COG3206 GumC Uncharacterized p 70.3 60 0.0013 30.4 10.6 31 103-133 373-403 (458)
296 TIGR03752 conj_TIGR03752 integ 70.1 69 0.0015 31.7 11.3 76 45-126 61-139 (472)
297 PRK11448 hsdR type I restricti 70.1 41 0.00089 36.0 10.5 31 50-80 149-179 (1123)
298 PF11488 Lge1: Transcriptional 70.0 42 0.00091 24.8 8.1 47 52-98 25-73 (80)
299 PF03938 OmpH: Outer membrane 69.8 50 0.0011 26.0 8.7 46 31-76 23-69 (158)
300 PF05622 HOOK: HOOK protein; 69.6 1.5 3.2E-05 43.5 0.0 89 42-131 238-342 (713)
301 PF06156 DUF972: Protein of un 69.6 35 0.00077 26.9 7.7 46 72-117 9-57 (107)
302 PF04582 Reo_sigmaC: Reovirus 69.6 4.9 0.00011 37.7 3.3 32 86-117 123-154 (326)
303 KOG1853 LIS1-interacting prote 69.5 94 0.002 29.1 11.4 56 44-99 92-157 (333)
304 PF09787 Golgin_A5: Golgin sub 69.3 49 0.0011 31.9 10.1 42 40-81 113-172 (511)
305 PF11740 KfrA_N: Plasmid repli 69.1 21 0.00045 27.0 6.2 50 31-80 69-118 (120)
306 PF12777 MT: Microtubule-bindi 69.1 29 0.00063 31.6 8.2 79 43-129 214-292 (344)
307 PF06818 Fez1: Fez1; InterPro 69.0 73 0.0016 28.1 10.2 37 29-65 23-67 (202)
308 PF04899 MbeD_MobD: MbeD/MobD 69.0 45 0.00097 24.8 8.8 53 29-81 7-59 (70)
309 PF11285 DUF3086: Protein of u 68.8 13 0.00029 34.2 5.8 58 65-129 5-63 (283)
310 TIGR00293 prefoldin, archaeal 68.7 51 0.0011 25.3 11.1 42 86-127 83-124 (126)
311 PF12128 DUF3584: Protein of u 68.7 57 0.0012 34.7 11.2 34 45-78 623-656 (1201)
312 KOG0978 E3 ubiquitin ligase in 68.6 1.4E+02 0.0031 30.9 13.5 112 13-124 377-517 (698)
313 PF07246 Phlebovirus_NSM: Phle 68.3 46 0.00099 30.6 9.1 26 56-81 160-185 (264)
314 TIGR01069 mutS2 MutS2 family p 68.2 1.4E+02 0.003 30.7 13.4 37 31-68 500-536 (771)
315 PF00170 bZIP_1: bZIP transcri 68.1 37 0.00081 23.5 8.8 34 83-116 27-60 (64)
316 PF05600 DUF773: Protein of un 68.1 40 0.00087 33.0 9.3 59 52-114 434-492 (507)
317 KOG2629 Peroxisomal membrane a 67.9 50 0.0011 30.9 9.4 65 46-117 118-182 (300)
318 PRK11519 tyrosine kinase; Prov 67.9 76 0.0016 31.8 11.3 27 104-130 371-397 (719)
319 PLN03188 kinesin-12 family pro 67.8 81 0.0018 34.8 12.1 53 68-124 1201-1254(1320)
320 PF14193 DUF4315: Domain of un 67.7 53 0.0011 25.1 8.3 61 44-124 2-62 (83)
321 PRK09841 cryptic autophosphory 67.6 1.1E+02 0.0024 30.8 12.4 29 45-73 269-297 (726)
322 PF02403 Seryl_tRNA_N: Seryl-t 67.5 50 0.0011 24.8 8.5 76 50-126 29-104 (108)
323 PRK15422 septal ring assembly 67.5 55 0.0012 25.2 9.7 24 86-109 50-73 (79)
324 PF13747 DUF4164: Domain of un 67.3 53 0.0012 25.0 10.2 33 90-122 40-72 (89)
325 PF13805 Pil1: Eisosome compon 67.3 98 0.0021 28.5 11.0 41 41-81 101-141 (271)
326 PF14915 CCDC144C: CCDC144C pr 67.2 1.1E+02 0.0024 28.7 11.8 80 38-117 216-299 (305)
327 KOG4603 TBP-1 interacting prot 66.9 51 0.0011 29.1 8.8 20 40-59 97-116 (201)
328 PF14193 DUF4315: Domain of un 66.8 18 0.00039 27.6 5.4 36 84-119 3-38 (83)
329 PF14257 DUF4349: Domain of un 66.8 46 0.00099 28.8 8.6 27 52-78 127-153 (262)
330 PF10211 Ax_dynein_light: Axon 66.7 80 0.0017 26.8 12.0 13 86-98 145-157 (189)
331 PHA03332 membrane glycoprotein 66.7 1E+02 0.0022 33.8 12.3 55 43-97 905-963 (1328)
332 KOG2391 Vacuolar sorting prote 66.6 73 0.0016 30.6 10.3 85 19-121 194-278 (365)
333 PRK00591 prfA peptide chain re 66.4 1E+02 0.0022 29.2 11.3 88 42-129 5-109 (359)
334 PRK13729 conjugal transfer pil 66.4 26 0.00057 34.4 7.7 47 65-115 70-116 (475)
335 PF04859 DUF641: Plant protein 66.4 22 0.00048 29.2 6.2 25 48-72 78-102 (131)
336 TIGR03545 conserved hypothetic 66.1 67 0.0015 31.9 10.5 64 63-126 190-267 (555)
337 KOG2417 Predicted G-protein co 66.1 22 0.00047 34.6 6.9 26 99-124 245-270 (462)
338 PF13094 CENP-Q: CENP-Q, a CEN 66.0 70 0.0015 25.9 10.1 70 48-128 25-94 (160)
339 PF15358 TSKS: Testis-specific 65.9 61 0.0013 32.2 9.9 64 18-81 99-177 (558)
340 COG5374 Uncharacterized conser 65.9 16 0.00034 32.2 5.5 36 45-80 138-173 (192)
341 PF05557 MAD: Mitotic checkpoi 65.7 29 0.00062 34.7 8.0 23 87-109 564-586 (722)
342 COG0419 SbcC ATPase involved i 65.7 79 0.0017 32.4 11.2 85 42-129 472-560 (908)
343 KOG4196 bZIP transcription fac 65.6 68 0.0015 26.9 8.9 62 61-123 45-108 (135)
344 KOG0614 cGMP-dependent protein 65.5 24 0.00053 36.0 7.3 45 37-81 18-62 (732)
345 PF02050 FliJ: Flagellar FliJ 65.5 47 0.001 23.7 9.6 67 49-115 4-71 (123)
346 PF14282 FlxA: FlxA-like prote 65.4 40 0.00086 26.2 7.2 42 40-81 23-68 (106)
347 PRK00578 prfB peptide chain re 65.3 1.3E+02 0.0028 28.6 12.6 85 32-116 12-112 (367)
348 PF05859 Mis12: Mis12 protein; 65.2 5.4 0.00012 32.2 2.4 55 11-70 86-142 (144)
349 KOG0979 Structural maintenance 65.1 85 0.0018 33.9 11.4 77 39-119 625-701 (1072)
350 PF03961 DUF342: Protein of un 64.9 36 0.00078 32.0 8.1 35 95-129 374-408 (451)
351 PRK06975 bifunctional uroporph 64.9 1.3E+02 0.0029 30.1 12.3 16 43-58 346-361 (656)
352 KOG0241 Kinesin-like protein [ 64.8 41 0.0009 36.7 9.1 65 31-95 346-424 (1714)
353 PF05667 DUF812: Protein of un 64.8 86 0.0019 31.5 11.0 75 46-124 331-408 (594)
354 PF09302 XLF: XLF (XRCC4-like 64.5 9.9 0.00021 30.8 3.8 43 31-74 128-170 (171)
355 PF05761 5_nucleotid: 5' nucle 64.5 31 0.00068 33.3 7.7 36 45-81 324-359 (448)
356 PF05008 V-SNARE: Vesicle tran 64.2 49 0.0011 23.4 8.2 52 61-116 22-74 (79)
357 KOG0978 E3 ubiquitin ligase in 64.1 95 0.0021 32.1 11.3 80 40-122 535-617 (698)
358 PHA03161 hypothetical protein; 64.0 67 0.0015 27.3 8.7 9 29-37 39-47 (150)
359 PRK10361 DNA recombination pro 64.0 1.5E+02 0.0034 29.2 13.1 14 102-115 146-159 (475)
360 smart00502 BBC B-Box C-termina 63.7 55 0.0012 23.9 13.2 11 105-115 81-91 (127)
361 KOG0249 LAR-interacting protei 63.7 1.1E+02 0.0025 32.2 11.7 29 99-127 209-237 (916)
362 PF15272 BBP1_C: Spindle pole 63.6 83 0.0018 27.7 9.5 18 60-77 103-120 (196)
363 KOG0933 Structural maintenance 63.5 57 0.0012 35.4 9.8 48 69-116 453-506 (1174)
364 PF06103 DUF948: Bacterial pro 63.4 56 0.0012 23.9 12.3 64 52-115 21-87 (90)
365 PF09311 Rab5-bind: Rabaptin-l 63.2 7.2 0.00016 32.7 2.9 75 36-114 8-82 (181)
366 PRK13169 DNA replication intia 63.1 55 0.0012 26.2 7.7 33 83-115 23-55 (110)
367 PF06637 PV-1: PV-1 protein (P 62.9 1.6E+02 0.0035 28.9 12.2 75 45-121 306-392 (442)
368 COG3937 Uncharacterized conser 62.8 33 0.00071 27.8 6.4 54 64-117 50-104 (108)
369 PF09755 DUF2046: Uncharacteri 62.7 1.4E+02 0.003 28.1 12.7 25 35-59 40-64 (310)
370 PRK00888 ftsB cell division pr 62.4 43 0.00092 26.1 6.8 33 84-116 29-61 (105)
371 KOG3859 Septins (P-loop GTPase 62.3 49 0.0011 31.7 8.3 31 87-117 375-405 (406)
372 PF02996 Prefoldin: Prefoldin 62.2 20 0.00044 27.0 4.9 64 11-76 54-117 (120)
373 PF07794 DUF1633: Protein of u 62.1 42 0.00091 34.1 8.2 89 38-126 592-704 (790)
374 PF10226 DUF2216: Uncharacteri 61.9 1.2E+02 0.0025 27.0 11.2 52 52-103 22-76 (195)
375 PF05701 WEMBL: Weak chloropla 61.8 1.3E+02 0.0028 29.3 11.4 39 43-81 281-319 (522)
376 TIGR00019 prfA peptide chain r 61.8 1.5E+02 0.0032 28.2 11.9 27 99-125 78-105 (360)
377 PF07926 TPR_MLP1_2: TPR/MLP1/ 61.8 79 0.0017 25.0 12.1 21 84-104 61-81 (132)
378 COG1340 Uncharacterized archae 61.8 1E+02 0.0022 28.8 10.1 65 47-115 31-95 (294)
379 COG3524 KpsE Capsule polysacch 61.7 1.3E+02 0.0028 28.8 11.0 88 25-122 213-323 (372)
380 PF10458 Val_tRNA-synt_C: Valy 61.5 53 0.0011 23.2 6.7 27 48-74 2-28 (66)
381 KOG0612 Rho-associated, coiled 61.5 1.5E+02 0.0031 32.9 12.4 40 86-125 512-551 (1317)
382 PRK00106 hypothetical protein; 61.5 1.8E+02 0.0039 29.0 14.1 41 87-127 120-160 (535)
383 cd00632 Prefoldin_beta Prefold 61.3 29 0.00063 26.3 5.7 34 40-73 67-100 (105)
384 KOG1853 LIS1-interacting prote 61.0 1.5E+02 0.0032 27.9 12.2 15 42-56 58-72 (333)
385 PF09730 BicD: Microtubule-ass 61.0 1.4E+02 0.0031 30.9 11.9 18 90-107 420-437 (717)
386 PRK10869 recombination and rep 60.9 87 0.0019 30.7 10.1 46 83-128 335-385 (553)
387 PF05308 Mito_fiss_reg: Mitoch 60.8 8.7 0.00019 34.5 3.1 24 37-60 116-139 (253)
388 COG3074 Uncharacterized protei 60.7 74 0.0016 24.4 9.4 44 65-108 26-72 (79)
389 PTZ00419 valyl-tRNA synthetase 60.6 26 0.00056 36.5 6.9 27 48-74 927-953 (995)
390 PF10475 DUF2450: Protein of u 60.6 1.2E+02 0.0026 26.8 13.8 71 11-81 12-98 (291)
391 KOG0018 Structural maintenance 60.6 98 0.0021 33.7 10.9 52 30-81 386-440 (1141)
392 COG0172 SerS Seryl-tRNA synthe 60.5 1.4E+02 0.0031 29.0 11.3 83 42-131 28-110 (429)
393 KOG2662 Magnesium transporters 60.4 1E+02 0.0022 30.1 10.2 75 25-103 174-255 (414)
394 PF14992 TMCO5: TMCO5 family 60.4 38 0.00082 31.3 7.1 35 44-78 12-46 (280)
395 PRK10929 putative mechanosensi 60.4 1.7E+02 0.0038 31.7 12.8 12 40-51 184-195 (1109)
396 PF04012 PspA_IM30: PspA/IM30 60.4 1E+02 0.0022 25.9 11.5 105 15-124 24-140 (221)
397 PF11570 E2R135: Coiled-coil r 60.2 62 0.0014 27.2 7.7 54 45-98 3-56 (136)
398 COG1777 Predicted transcriptio 60.1 70 0.0015 28.7 8.5 70 52-123 120-192 (217)
399 TIGR01554 major_cap_HK97 phage 60.0 1.4E+02 0.003 27.2 10.8 7 68-74 38-44 (378)
400 KOG0963 Transcription factor/C 59.9 93 0.002 31.8 10.3 71 52-122 280-353 (629)
401 PF06810 Phage_GP20: Phage min 59.8 78 0.0017 26.2 8.3 50 52-102 15-64 (155)
402 PF12761 End3: Actin cytoskele 59.8 1.2E+02 0.0027 26.6 10.6 27 49-75 95-121 (195)
403 KOG0239 Kinesin (KAR3 subfamil 59.6 1.8E+02 0.004 29.7 12.4 16 66-81 243-258 (670)
404 KOG0239 Kinesin (KAR3 subfamil 59.5 1.5E+02 0.0032 30.4 11.7 51 52-102 243-293 (670)
405 PF04849 HAP1_N: HAP1 N-termin 59.5 1.1E+02 0.0024 28.6 10.1 30 52-81 215-244 (306)
406 PF04576 Zein-binding: Zein-bi 59.3 87 0.0019 24.7 10.2 41 84-124 33-81 (94)
407 KOG0243 Kinesin-like protein [ 59.1 1.8E+02 0.0039 31.5 12.6 76 21-104 430-512 (1041)
408 COG1842 PspA Phage shock prote 58.9 1.3E+02 0.0028 26.6 14.1 25 102-126 119-143 (225)
409 PF03148 Tektin: Tektin family 58.9 1.6E+02 0.0034 27.5 12.2 80 33-117 206-286 (384)
410 PF15272 BBP1_C: Spindle pole 58.8 78 0.0017 27.8 8.5 47 63-109 81-127 (196)
411 PF03938 OmpH: Outer membrane 58.7 86 0.0019 24.6 8.1 18 41-58 48-65 (158)
412 PRK09737 EcoKI restriction-mod 58.7 25 0.00054 31.6 5.6 39 88-126 372-414 (461)
413 PRK06664 fliD flagellar hook-a 58.6 1E+02 0.0022 31.3 10.4 86 15-107 559-657 (661)
414 PRK08724 fliD flagellar cappin 58.4 1.2E+02 0.0027 31.2 10.9 54 41-101 615-668 (673)
415 PF13815 Dzip-like_N: Iguana/D 58.4 49 0.0011 25.8 6.6 26 86-111 91-116 (118)
416 PF04871 Uso1_p115_C: Uso1 / p 58.1 1E+02 0.0022 25.1 10.7 72 47-122 2-74 (136)
417 PF13935 Ead_Ea22: Ead/Ea22-li 57.9 99 0.0021 24.9 9.2 71 42-116 66-139 (139)
418 KOG2129 Uncharacterized conser 57.8 1.7E+02 0.0037 29.2 11.4 39 86-127 187-225 (552)
419 PF11740 KfrA_N: Plasmid repli 57.7 80 0.0017 23.8 7.9 35 37-71 82-116 (120)
420 KOG4593 Mitotic checkpoint pro 57.7 2.4E+02 0.0053 29.4 12.8 25 100-124 238-262 (716)
421 PF12128 DUF3584: Protein of u 57.7 2.7E+02 0.0058 29.9 15.5 50 82-131 490-539 (1201)
422 PF02601 Exonuc_VII_L: Exonucl 57.6 1.4E+02 0.003 26.5 13.1 36 46-81 146-182 (319)
423 PF10267 Tmemb_cc2: Predicted 57.6 1.8E+02 0.004 27.9 12.4 88 40-129 223-329 (395)
424 PF09738 DUF2051: Double stran 57.4 1.3E+02 0.0028 27.8 10.1 23 52-74 114-136 (302)
425 KOG0972 Huntingtin interacting 57.1 53 0.0011 31.3 7.6 58 41-98 264-324 (384)
426 KOG0976 Rho/Rac1-interacting s 57.0 88 0.0019 33.6 9.8 31 47-77 327-357 (1265)
427 PF12808 Mto2_bdg: Micro-tubul 57.0 9.6 0.00021 27.0 2.2 28 33-60 19-46 (52)
428 PF10212 TTKRSYEDQ: Predicted 56.9 2.2E+02 0.0047 28.6 12.1 81 41-121 418-516 (518)
429 PF06785 UPF0242: Uncharacteri 56.9 1.9E+02 0.0042 28.0 13.9 26 54-79 89-114 (401)
430 COG3334 Uncharacterized conser 56.9 1.4E+02 0.003 26.3 10.9 84 20-109 44-132 (192)
431 COG5570 Uncharacterized small 56.9 24 0.00053 25.5 4.2 18 64-81 5-22 (57)
432 PRK06665 flgK flagellar hook-a 56.9 90 0.0019 31.2 9.6 87 19-108 131-221 (627)
433 KOG0964 Structural maintenance 56.8 1.3E+02 0.0027 32.9 11.0 71 41-115 409-479 (1200)
434 PF08606 Prp19: Prp19/Pso4-lik 56.8 59 0.0013 24.4 6.4 43 66-108 24-69 (70)
435 COG2919 Septum formation initi 56.8 95 0.0021 24.4 11.0 42 86-127 61-102 (117)
436 PRK05431 seryl-tRNA synthetase 56.3 1.1E+02 0.0025 28.9 9.8 62 66-128 44-105 (425)
437 PF07798 DUF1640: Protein of u 56.3 1.2E+02 0.0025 25.2 12.8 31 50-80 58-89 (177)
438 PRK13922 rod shape-determining 56.2 1.4E+02 0.003 26.0 10.9 39 83-121 70-108 (276)
439 PF10367 Vps39_2: Vacuolar sor 56.2 69 0.0015 23.1 6.8 11 15-25 13-23 (109)
440 PF04949 Transcrip_act: Transc 56.1 1.3E+02 0.0029 25.8 11.1 74 40-113 53-143 (159)
441 PF11500 Cut12: Spindle pole b 55.9 19 0.00042 30.4 4.2 32 50-81 105-136 (152)
442 PRK10636 putative ABC transpor 55.8 1.4E+02 0.003 29.5 10.6 64 53-116 559-625 (638)
443 PF10883 DUF2681: Protein of u 55.7 48 0.001 25.6 6.0 37 83-119 24-60 (87)
444 PF06730 FAM92: FAM92 protein; 55.6 58 0.0012 29.1 7.3 73 57-129 4-94 (219)
445 PF01576 Myosin_tail_1: Myosin 55.4 3.9 8.4E-05 42.0 0.0 78 45-122 182-262 (859)
446 PF13863 DUF4200: Domain of un 55.4 91 0.002 23.7 14.9 85 40-124 29-116 (126)
447 PF03357 Snf7: Snf7; InterPro 55.1 1E+02 0.0022 24.1 9.8 23 37-59 9-31 (171)
448 cd00890 Prefoldin Prefoldin is 55.0 39 0.00084 25.5 5.4 36 41-76 92-127 (129)
449 KOG0999 Microtubule-associated 54.9 1.1E+02 0.0023 31.6 9.8 74 47-120 146-225 (772)
450 PF05852 DUF848: Gammaherpesvi 54.9 23 0.00049 29.8 4.4 7 29-35 39-45 (146)
451 KOG0946 ER-Golgi vesicle-tethe 54.7 1.3E+02 0.0028 32.1 10.5 42 40-81 675-716 (970)
452 COG5493 Uncharacterized conser 54.6 1.7E+02 0.0036 26.5 11.9 19 13-31 2-20 (231)
453 PF12072 DUF3552: Domain of un 54.6 1.3E+02 0.0029 25.4 14.5 40 61-100 75-114 (201)
454 PF11262 Tho2: Transcription f 54.4 67 0.0014 29.0 7.7 63 40-102 28-91 (298)
455 PHA00489 scaffolding protein 54.4 60 0.0013 25.9 6.4 49 60-112 23-71 (101)
456 PF14739 DUF4472: Domain of un 54.3 1.1E+02 0.0025 24.5 10.1 61 40-111 32-92 (108)
457 PF15480 DUF4640: Domain of un 54.2 20 0.00043 33.3 4.3 30 92-123 104-133 (292)
458 PF05546 She9_MDM33: She9 / Md 54.2 95 0.0021 27.6 8.3 32 50-81 32-63 (207)
459 PRK11415 hypothetical protein; 54.1 44 0.00096 24.5 5.4 57 53-110 6-67 (74)
460 cd07638 BAR_ACAP2 The Bin/Amph 54.1 1.5E+02 0.0032 25.8 9.9 80 44-127 3-85 (200)
461 PRK14160 heat shock protein Gr 54.1 1.6E+02 0.0034 26.1 11.1 39 43-81 54-92 (211)
462 PF14077 WD40_alt: Alternative 54.0 8.2 0.00018 27.2 1.4 18 41-58 16-33 (48)
463 PF06248 Zw10: Centromere/kine 54.0 2.2E+02 0.0047 27.8 11.5 34 66-99 48-93 (593)
464 PRK00295 hypothetical protein; 54.0 82 0.0018 22.8 7.5 13 69-81 3-15 (68)
465 PF07200 Mod_r: Modifier of ru 53.9 1.1E+02 0.0024 24.2 13.7 42 40-81 45-86 (150)
466 TIGR02449 conserved hypothetic 53.9 58 0.0012 24.0 5.9 23 88-110 13-35 (65)
467 COG4477 EzrA Negative regulato 53.8 1.7E+02 0.0036 29.8 10.8 83 42-124 346-435 (570)
468 KOG0962 DNA repair protein RAD 53.8 1.4E+02 0.0029 33.1 10.8 66 50-115 216-287 (1294)
469 PF05700 BCAS2: Breast carcino 53.5 1.5E+02 0.0032 25.6 12.3 14 67-80 139-152 (221)
470 PF07111 HCR: Alpha helical co 53.3 2.9E+02 0.0063 29.0 12.6 35 47-81 518-552 (739)
471 PF11418 Scaffolding_pro: Phi2 53.1 1.1E+02 0.0025 24.2 8.1 49 60-112 22-70 (97)
472 PF05103 DivIVA: DivIVA protei 52.9 13 0.00027 28.5 2.4 43 84-126 27-69 (131)
473 PF05531 NPV_P10: Nucleopolyhe 52.8 80 0.0017 23.9 6.6 21 94-114 40-60 (75)
474 PF10359 Fmp27_WPPW: RNA pol I 52.8 74 0.0016 30.6 8.0 42 90-131 194-235 (475)
475 PRK07739 flgK flagellar hook-a 52.6 1.2E+02 0.0025 29.4 9.4 40 19-60 131-170 (507)
476 TIGR02209 ftsL_broad cell divi 52.5 83 0.0018 22.4 6.8 43 32-76 15-57 (85)
477 PF04375 HemX: HemX; InterPro 52.5 1.9E+02 0.0041 26.9 10.4 18 43-60 60-77 (372)
478 PF15397 DUF4618: Domain of un 52.4 1.9E+02 0.004 26.5 12.7 23 29-51 49-71 (258)
479 PF07200 Mod_r: Modifier of ru 52.2 1.2E+02 0.0025 24.0 9.0 83 45-128 36-121 (150)
480 PF04859 DUF641: Plant protein 52.1 45 0.00098 27.4 5.7 20 61-80 84-103 (131)
481 PF07798 DUF1640: Protein of u 52.0 1.4E+02 0.003 24.8 12.4 9 116-124 148-156 (177)
482 PF05483 SCP-1: Synaptonemal c 51.9 1.5E+02 0.0033 31.0 10.4 87 40-129 230-333 (786)
483 PF06548 Kinesin-related: Kine 51.8 2.6E+02 0.0056 27.9 12.1 15 67-81 430-444 (488)
484 KOG4360 Uncharacterized coiled 51.8 2.4E+02 0.0052 28.7 11.5 88 40-127 163-264 (596)
485 PF06160 EzrA: Septation ring 51.8 1.7E+02 0.0036 28.8 10.4 59 40-102 348-406 (560)
486 PF05266 DUF724: Protein of un 51.8 1.6E+02 0.0034 25.4 13.0 34 86-119 121-154 (190)
487 PF04363 DUF496: Protein of un 51.6 1.2E+02 0.0026 24.1 7.8 57 53-109 15-94 (95)
488 KOG3650 Predicted coiled-coil 51.5 86 0.0019 25.6 7.0 30 82-111 77-106 (120)
489 COG0598 CorA Mg2+ and Co2+ tra 51.4 1.8E+02 0.004 26.1 10.0 24 38-61 149-172 (322)
490 PHA03185 UL14 tegument protein 51.4 1.2E+02 0.0026 27.2 8.5 61 30-93 55-115 (214)
491 PF05335 DUF745: Protein of un 51.4 1.2E+02 0.0027 26.2 8.5 54 39-96 119-172 (188)
492 cd07666 BAR_SNX7 The Bin/Amphi 51.4 1.8E+02 0.0039 26.0 13.5 98 25-126 110-218 (243)
493 KOG2180 Late Golgi protein sor 51.4 1.3E+02 0.0028 31.6 9.8 78 45-126 42-123 (793)
494 PRK10929 putative mechanosensi 51.2 2.6E+02 0.0057 30.4 12.4 88 41-128 213-304 (1109)
495 PF02646 RmuC: RmuC family; I 51.1 1.2E+02 0.0027 27.3 8.8 59 49-110 1-62 (304)
496 PF06705 SF-assemblin: SF-asse 50.8 1.7E+02 0.0036 25.4 12.6 82 39-122 8-94 (247)
497 PF04136 Sec34: Sec34-like fam 50.6 1.4E+02 0.0031 24.6 11.1 74 41-118 5-78 (157)
498 PHA02414 hypothetical protein 50.6 25 0.00054 28.4 3.8 52 61-113 1-53 (111)
499 KOG3091 Nuclear pore complex, 50.5 2.8E+02 0.006 27.9 11.9 90 31-126 387-500 (508)
500 PF05531 NPV_P10: Nucleopolyhe 50.5 52 0.0011 25.0 5.3 46 40-89 15-63 (75)
No 1
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.82 E-value=0.037 Score=45.14 Aligned_cols=78 Identities=21% Similarity=0.321 Sum_probs=53.7
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 028818 35 KITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (203)
Q Consensus 35 kIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (203)
|+-.-++-.|+..+|..+..|-+...+|+..|..|+.|+..||..|- ++.....+......+......++-.|+|-|.
T Consensus 6 k~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld-~~~~~l~~~k~~lee~~~~~~~~E~l~rriq 83 (143)
T PF12718_consen 6 KLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELD-KLEEQLKEAKEKLEESEKRKSNAEQLNRRIQ 83 (143)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHhHHHHHhhHH
Confidence 44455778899999999999999999999999999999999999996 3333333333333333333333334444443
No 2
>PRK11637 AmiB activator; Provisional
Probab=96.64 E-value=0.039 Score=51.03 Aligned_cols=108 Identities=19% Similarity=0.248 Sum_probs=51.3
Q ss_pred CCCChHHHHhhCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH--
Q 028818 11 TFDLPEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIE-------SIYSSLS-- 81 (203)
Q Consensus 11 ~f~lp~eil~vLP~DP~EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s-------~Le~~L~-- 81 (203)
.|.+..-|+.+| |-++- ..+++..-...++.++..+++++.++...|.+++.+.. .++.++.
T Consensus 17 ~~~~~~~~~~~l-------l~~~~--~~~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~ 87 (428)
T PRK11637 17 RFAIRPILYASV-------LSAGV--LLCAFSAHASDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQA 87 (428)
T ss_pred hhhhhhHHHHHH-------HHHHH--HHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666655 22222 22222222334444455555555444444444444433 3333333
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 028818 82 -DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (203)
Q Consensus 82 -~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq 127 (203)
.++....++...+.++.+.|...++.+..++.+++.--+.++..+.
T Consensus 88 ~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y 134 (428)
T PRK11637 88 SRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAF 134 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555555444444444333
No 3
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=96.61 E-value=0.04 Score=46.15 Aligned_cols=82 Identities=26% Similarity=0.434 Sum_probs=28.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028818 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (203)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (203)
++.|+..+..++..|+.++.++...|.+|+..+..|+..+. ..|+.....+..|..|..+|--+...+...+.+|+.
T Consensus 93 l~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~ 172 (194)
T PF08614_consen 93 LAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEE 172 (194)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555554444 333344444444444444444444444444444444
Q ss_pred HHHHH
Q 028818 118 FRKTL 122 (203)
Q Consensus 118 FKk~L 122 (203)
=-+.|
T Consensus 173 En~~L 177 (194)
T PF08614_consen 173 ENREL 177 (194)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
No 4
>PRK10884 SH3 domain-containing protein; Provisional
Probab=96.61 E-value=0.028 Score=48.67 Aligned_cols=69 Identities=26% Similarity=0.381 Sum_probs=42.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (203)
-...|+-.||.|+..|+.+|++-+... ..+...+ +.++..+.+...+|.+||+.|...+..+..++..|
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~---~~~~~~l----~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l 158 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTW---NQRTAEM----QQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAA 158 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455788899999999999998765432 2222222 23333555555556666666666666665555443
No 5
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=96.24 E-value=0.076 Score=53.10 Aligned_cols=83 Identities=29% Similarity=0.415 Sum_probs=73.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~------~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (203)
++-.+|.+||.|+..|+..+.+..+.|..|+.++..+...+. -.+.....++..|.++-..=...|.-|.|.++
T Consensus 426 ~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~ 505 (652)
T COG2433 426 KLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLA 505 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999988877 44556777889999999988999999999999
Q ss_pred HHHHHHHHH
Q 028818 114 KLEVFRKTL 122 (203)
Q Consensus 114 KLE~FKk~L 122 (203)
+|+.+++-.
T Consensus 506 ~l~k~~~lE 514 (652)
T COG2433 506 ELRKMRKLE 514 (652)
T ss_pred HHHHHHhhh
Confidence 999888843
No 6
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=96.20 E-value=0.12 Score=49.48 Aligned_cols=68 Identities=22% Similarity=0.298 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHH
Q 028818 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------------------------DKLGQAQADKERLSKENEALTN 103 (203)
Q Consensus 49 E~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~-------------------------~rL~~a~ee~~kL~~E~~~La~ 103 (203)
|.=++.||..+....++..+|+.+-..+|..|+ -.-..+++|++.|.+|+++|+.
T Consensus 284 eelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEKaaLrkerd~L~k 363 (442)
T PF06637_consen 284 EELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEKAALRKERDSLAK 363 (442)
T ss_pred HHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666666666666666666666665554 1223467888999999999999
Q ss_pred HHHHHhhhHHHHH
Q 028818 104 TVRKLQRDVSKLE 116 (203)
Q Consensus 104 TvKkL~rDvaKLE 116 (203)
.+-...|+++.|+
T Consensus 364 eLeekkreleql~ 376 (442)
T PF06637_consen 364 ELEEKKRELEQLK 376 (442)
T ss_pred HHHHHHHHHHHHH
Confidence 9988888887654
No 7
>PRK11637 AmiB activator; Provisional
Probab=96.19 E-value=0.12 Score=47.70 Aligned_cols=68 Identities=9% Similarity=0.180 Sum_probs=27.4
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 028818 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (203)
Q Consensus 43 tRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (203)
.+...++.++..|..++.+-...|.+++.++..++.++. ...++..+++++.+.+...++++-|.+.+
T Consensus 68 ~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~----~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 68 QQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQID----ELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444333333333333333333333 44444444444444444444444443333
No 8
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=96.15 E-value=0.086 Score=38.89 Aligned_cols=65 Identities=28% Similarity=0.435 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 028818 54 ALRSQLAEKDSRIAELQSQIESIYS---SLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (203)
Q Consensus 54 ~LR~~LaEKd~~i~~Lq~r~s~Le~---~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (203)
.|-..|+|||..|+.|.+.-..|-. .+..-++..+..+..+.++.+.|...+.++..++..|+.+
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667899999999999955554443 3334444444455555555555555555555555544443
No 9
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=96.13 E-value=0.07 Score=44.70 Aligned_cols=72 Identities=18% Similarity=0.344 Sum_probs=45.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTV-RKLQRDVSKL 115 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~Tv-KkL~rDvaKL 115 (203)
.+...+..|+.++..|...+.||...+..|++-+..|.-++. .+.+...+|.+||+.|.... ++-+++..+|
T Consensus 120 ~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~----~~e~k~~~l~~En~~Lv~Rwm~~k~~eAe~m 192 (194)
T PF08614_consen 120 ELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLN----MLEEKLRKLEEENRELVERWMQRKAQEAERM 192 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444455555555555666666666666666666665554 88999999999999998763 4444554443
No 10
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.92 E-value=0.55 Score=38.87 Aligned_cols=84 Identities=26% Similarity=0.389 Sum_probs=64.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 028818 40 AISTRVSDLESEHSALRSQLA-------EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~La-------EKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (203)
-+..||-+||+|+........ .+.+.|..|+.+++.+...+. ....+...|.+||..|.....+.+..|
T Consensus 21 sle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~----~L~~EL~~l~sEk~~L~k~lq~~q~kv 96 (140)
T PF10473_consen 21 SLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELN----QLELELDTLRSEKENLDKELQKKQEKV 96 (140)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577889999998776655433 344455666666666666555 888999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcc
Q 028818 113 SKLEVFRKTLVQSLK 127 (203)
Q Consensus 113 aKLE~FKk~LmqSLq 127 (203)
+-||.....+-.-|+
T Consensus 97 ~eLE~~~~~~~~~l~ 111 (140)
T PF10473_consen 97 SELESLNSSLENLLQ 111 (140)
T ss_pred HHHHHHhHHHHHHHH
Confidence 999988776655444
No 11
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=95.85 E-value=0.21 Score=39.94 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
+.+|+.+++++.+.+..++.+...++..+.
T Consensus 75 ~~rL~~~~~~~ere~~~~~~~~~~l~~~~~ 104 (151)
T PF11559_consen 75 VERLKEQLEELERELASAEEKERQLQKQLK 104 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555
No 12
>PRK09039 hypothetical protein; Validated
Probab=95.78 E-value=0.2 Score=45.94 Aligned_cols=88 Identities=17% Similarity=0.233 Sum_probs=67.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRD-VSKL 115 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rD-vaKL 115 (203)
....|+..|+.+...++....|....|.-|+.++..|..+|. +.|..+.++....+...+.|...+.+.-.+ +..|
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l 192 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQEL 192 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777778888888888888888888888888888877 666677777777777777777777666544 8889
Q ss_pred HHHHHHHHhhcc
Q 028818 116 EVFRKTLVQSLK 127 (203)
Q Consensus 116 E~FKk~LmqSLq 127 (203)
+.||..+..-|.
T Consensus 193 ~~~~~~~~~~l~ 204 (343)
T PRK09039 193 NRYRSEFFGRLR 204 (343)
T ss_pred HHhHHHHHHHHH
Confidence 999999976664
No 13
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.28 E-value=0.37 Score=43.03 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=10.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLA 60 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~La 60 (203)
.|..-|+.+|.++..+|.++.
T Consensus 56 ~le~qv~~~e~ei~~~r~r~~ 76 (239)
T COG1579 56 DLENQVSQLESEIQEIRERIK 76 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555554443
No 14
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=95.19 E-value=0.34 Score=38.76 Aligned_cols=68 Identities=22% Similarity=0.404 Sum_probs=52.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028818 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (203)
Q Consensus 46 s~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (203)
..|+..+.+++..+..-...+..|+.+++.++.++. .+..+...|.++...+..++|.+..++.||.+
T Consensus 55 e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~----~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~ 122 (151)
T PF11559_consen 55 EDLSDKLRRLRSDIERLQNDVERLKEQLEELERELA----SAEEKERQLQKQLKSLEAKLKQEKEELQKLKN 122 (151)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666777788888888888776 77788888888888999999999988888874
No 15
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.07 E-value=0.81 Score=40.91 Aligned_cols=72 Identities=17% Similarity=0.344 Sum_probs=49.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH---------HHHHHHHHHHHHHHHHHHHhhhH
Q 028818 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQA---------DKERLSKENEALTNTVRKLQRDV 112 (203)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~e---------e~~kL~~E~~~La~TvKkL~rDv 112 (203)
+.++.+|..+++..+.+++..+.+|+.+++.++..++ .|+..+.. +...|..|.+.+......|+.++
T Consensus 33 l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el 112 (239)
T COG1579 33 LKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDEL 112 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888899999999999999998888888 44444332 23455555555555555555555
Q ss_pred HHHH
Q 028818 113 SKLE 116 (203)
Q Consensus 113 aKLE 116 (203)
+.|.
T Consensus 113 ~~l~ 116 (239)
T COG1579 113 AELM 116 (239)
T ss_pred HHHH
Confidence 5443
No 16
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.04 E-value=0.54 Score=43.91 Aligned_cols=97 Identities=11% Similarity=0.245 Sum_probs=58.7
Q ss_pred HhhCCCCchhhHHHHHHHHHH--------HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 19 LQVLPSDPFEQLDVARKITSI--------AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQAD 90 (203)
Q Consensus 19 l~vLP~DP~EQLdlarkIts~--------A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee 90 (203)
...++..|.+--.+-.+|... ..+.++..++.++..|+.++.+....+..++..+..++..+...+....++
T Consensus 142 ~~f~~~~~~er~~il~~l~~~~~~~~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e 221 (562)
T PHA02562 142 VPFMQLSAPARRKLVEDLLDISVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNK 221 (562)
T ss_pred hhHhcCChHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555433 456677778888888888888888888877777777766555444444444
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHH
Q 028818 91 KERLSKENEALTNTVRKLQRDVSKL 115 (203)
Q Consensus 91 ~~kL~~E~~~La~TvKkL~rDvaKL 115 (203)
..+|..+...|...+..|..++..|
T Consensus 222 ~~~l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 222 YDELVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555444444444444333
No 17
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=95.04 E-value=0.81 Score=38.88 Aligned_cols=85 Identities=24% Similarity=0.368 Sum_probs=42.9
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH----
Q 028818 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSK---- 114 (203)
Q Consensus 42 atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaK---- 114 (203)
+..+..++..+..||..+.+....|.+.++++..+..++. ..|....+...+..+....+.+.++...+.+.+
T Consensus 62 ~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 141 (302)
T PF10186_consen 62 KREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQ 141 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555556666666666666666666666666555 333322333333444444444444444444443
Q ss_pred HHHHHHHHHhhc
Q 028818 115 LEVFRKTLVQSL 126 (203)
Q Consensus 115 LE~FKk~LmqSL 126 (203)
+..=++.+++.|
T Consensus 142 l~~~r~~l~~~l 153 (302)
T PF10186_consen 142 LARRRRQLIQEL 153 (302)
T ss_pred HHHHHHHHHHHH
Confidence 444555666644
No 18
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=94.90 E-value=1.6 Score=37.55 Aligned_cols=90 Identities=17% Similarity=0.192 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028818 30 LDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (203)
Q Consensus 30 LdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (203)
|+|..+-..+||......||+....|...|.+..+.|.++..+=-.-+.+...+|+...+.-..+...|-.+...+..|.
T Consensus 123 LeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le 202 (221)
T PF05700_consen 123 LELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELE 202 (221)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888899999999999999999999999999999997655555555557777777777777777777777777787
Q ss_pred hhHHHHHHHH
Q 028818 110 RDVSKLEVFR 119 (203)
Q Consensus 110 rDvaKLE~FK 119 (203)
++|..|+.=+
T Consensus 203 ~ei~~l~~~~ 212 (221)
T PF05700_consen 203 QEIEQLKRKA 212 (221)
T ss_pred HHHHHHHHHH
Confidence 7777665433
No 19
>PRK03918 chromosome segregation protein; Provisional
Probab=94.76 E-value=1.3 Score=43.77 Aligned_cols=93 Identities=25% Similarity=0.297 Sum_probs=38.7
Q ss_pred CCCCchhhHHHHHHHHHHHHHHhhhhhHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH
Q 028818 22 LPSDPFEQLDVARKITSIAISTRVSDLESEH----------SALRSQLAEKDSRIAELQSQIESIYSSLS------DKLG 85 (203)
Q Consensus 22 LP~DP~EQLdlarkIts~A~atRVs~LE~E~----------~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~------~rL~ 85 (203)
+..|-|+++.-..+-....+..++..|+..+ ..++.++.+....+..++.++..++..+. ..|.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~ 234 (880)
T PRK03918 155 LGLDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELE 234 (880)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433333344445544444433 23333333444444444444444444443 1333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 028818 86 QAQADKERLSKENEALTNTVRKLQRDVSK 114 (203)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (203)
...++...|.++...|....+.+..++.+
T Consensus 235 ~~~~~~~~l~~~~~~l~~~~~~l~~~i~~ 263 (880)
T PRK03918 235 ELKEEIEELEKELESLEGSKRKLEEKIRE 263 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333333
No 20
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.73 E-value=0.89 Score=42.19 Aligned_cols=87 Identities=31% Similarity=0.449 Sum_probs=52.9
Q ss_pred HHHHHhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHh
Q 028818 39 IAISTRVSDLESEHSALRSQLA-EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNT--------VRKLQ 109 (203)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~La-EKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~T--------vKkL~ 109 (203)
|.+..|+.+|-.|-..|=.+|. |...++.-|+.++..|+.... .......+|.+|+-.|.+| |.+|.
T Consensus 109 n~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~----~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~ 184 (310)
T PF09755_consen 109 NDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKS----AKQEELERLRREKVDLENTLEQEQEALVNRLW 184 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444 344455555555555554332 2233344677777777666 57899
Q ss_pred hhHHHHHHHHHHHHhhcccc
Q 028818 110 RDVSKLEVFRKTLVQSLKDD 129 (203)
Q Consensus 110 rDvaKLE~FKk~LmqSLq~d 129 (203)
+.+++|++=||.|=..|..-
T Consensus 185 Kqm~~l~~eKr~Lq~~l~~~ 204 (310)
T PF09755_consen 185 KQMDKLEAEKRRLQEKLEQP 204 (310)
T ss_pred HHHHHHHHHHHHHHHHHccc
Confidence 99999999999988877643
No 21
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=94.54 E-value=1.4 Score=36.10 Aligned_cols=80 Identities=18% Similarity=0.346 Sum_probs=42.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (203)
....+...|+.|+..+...+.+...++..+++....+...+. .++....+...++.+|-..|.+-++.+.+.+..++
T Consensus 85 ~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~ 164 (191)
T PF04156_consen 85 ELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELR 164 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666666655555555555544443333 55556666666666665555533333334444433
Q ss_pred HHH
Q 028818 117 VFR 119 (203)
Q Consensus 117 ~FK 119 (203)
...
T Consensus 165 ~~~ 167 (191)
T PF04156_consen 165 SQL 167 (191)
T ss_pred HHH
Confidence 333
No 22
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=94.24 E-value=2.4 Score=39.36 Aligned_cols=96 Identities=22% Similarity=0.303 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-----------------H
Q 028818 30 LDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQ-----------------A 89 (203)
Q Consensus 30 LdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~-----------------e 89 (203)
|.-...-|..||..||...+.--..|-.++.+-...|++++.-+..|+.++. +-|+.|. .
T Consensus 238 l~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~ 317 (384)
T PF03148_consen 238 LRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDP 317 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhh
Confidence 3344455777999999998888888888888888899999999999998888 2233222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 028818 90 DKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQS 125 (203)
Q Consensus 90 e~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqS 125 (203)
-+..|..|-..|..++.+|+..+...+..-+.|...
T Consensus 318 ~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~ 353 (384)
T PF03148_consen 318 PQYGLIEEVKELRESIEALQEKLDEAEASLQKLERT 353 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 237899999999999999999999999888888763
No 23
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.21 E-value=1.2 Score=36.29 Aligned_cols=76 Identities=20% Similarity=0.329 Sum_probs=49.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSR----------IAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVR 106 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~----------i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvK 106 (203)
++-.|++.||.++..+..+|.+-... ...|+.|+..||.+|- .+|+.+.+........-+-+...|+
T Consensus 39 sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~ 118 (143)
T PF12718_consen 39 SLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVK 118 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 67788888888888877776643332 2446677777777776 6666666666666666666666666
Q ss_pred HHhhhHHHH
Q 028818 107 KLQRDVSKL 115 (203)
Q Consensus 107 kL~rDvaKL 115 (203)
.|......+
T Consensus 119 ~le~~~~~~ 127 (143)
T PF12718_consen 119 ALEQERDQW 127 (143)
T ss_pred HHHhhHHHH
Confidence 665554443
No 24
>PRK02224 chromosome segregation protein; Provisional
Probab=94.20 E-value=1.7 Score=43.22 Aligned_cols=13 Identities=15% Similarity=0.376 Sum_probs=5.1
Q ss_pred CchhhHHHHHHHH
Q 028818 25 DPFEQLDVARKIT 37 (203)
Q Consensus 25 DP~EQLdlarkIt 37 (203)
+|-+-.++-.+|.
T Consensus 147 ~p~~R~~ii~~l~ 159 (880)
T PRK02224 147 TPSDRQDMIDDLL 159 (880)
T ss_pred CHHHHHHHHHHHh
Confidence 4433333333333
No 25
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=94.16 E-value=1.9 Score=32.83 Aligned_cols=79 Identities=20% Similarity=0.281 Sum_probs=56.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-------HHHHH
Q 028818 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV-------SKLEV 117 (203)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv-------aKLE~ 117 (203)
+-++|.+...++..+..|-..+..+++++..|+.+.. .+.++.-.+-+-+++|.+-+|+|+..+ ++|..
T Consensus 5 L~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~----kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 5 LVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKA----KADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4578889999999999999999999999999999988 555555555555555555555555554 44555
Q ss_pred HHHHHHhhcc
Q 028818 118 FRKTLVQSLK 127 (203)
Q Consensus 118 FKk~LmqSLq 127 (203)
.=+.+++.|.
T Consensus 81 ~E~~~~~~l~ 90 (96)
T PF08647_consen 81 TEKEFVRKLK 90 (96)
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 26
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=93.94 E-value=1.5 Score=42.88 Aligned_cols=43 Identities=16% Similarity=0.311 Sum_probs=33.5
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 028818 39 IAISTRVSDLESEHSALRSQLAE--KDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~LaE--Kd~~i~~Lq~r~s~Le~~L~ 81 (203)
.++..+...+|.|+..+..+|.. ....|..|++++..++..+.
T Consensus 394 ~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~ 438 (650)
T TIGR03185 394 SQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELF 438 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 47778889999999999999974 34677777777777777665
No 27
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.83 E-value=0.93 Score=42.36 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=16.8
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSS 79 (203)
Q Consensus 42 atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~ 79 (203)
..|+..++.++..+|..+.++-..+..|+.++..|+..
T Consensus 336 ~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~ 373 (562)
T PHA02562 336 SKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAE 373 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444444444444444444444443
No 28
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.70 E-value=0.31 Score=44.72 Aligned_cols=34 Identities=29% Similarity=0.413 Sum_probs=31.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (203)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~ 78 (203)
+..|+.||++|+..|.+||+.|-+-.++++.|-.
T Consensus 227 i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKa 260 (305)
T KOG3990|consen 227 IQKLKEEIARLKKLLHQKDQLILEKDKQISNLKA 260 (305)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCc
Confidence 4689999999999999999999999999998765
No 29
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.68 E-value=1.1 Score=38.82 Aligned_cols=66 Identities=14% Similarity=0.237 Sum_probs=41.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (203)
++...+..|+.+...++++.. ...++|++++...+.... ...++|.+|.+|...+.+.+..|+..+
T Consensus 97 ~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~----~L~~~n~~L~~~l~~~~~~~~~l~~~~ 162 (206)
T PRK10884 97 DLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVIN----GLKEENQKLKNQLIVAQKKVDAANLQL 162 (206)
T ss_pred HHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888877654 555566666666555554 455555555555555555555554443
No 30
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=93.59 E-value=0.92 Score=42.12 Aligned_cols=72 Identities=21% Similarity=0.415 Sum_probs=58.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHH----------------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAE----------------KDSRI---AELQSQIESIYSSLSDKLGQAQADKERLSKENEA 100 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaE----------------Kd~~i---~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~ 100 (203)
.+..|+..++.++.-||.+++. |...| +.+++++..|+..|+ ...++.+.|..|+|.
T Consensus 90 ~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~q----s~lDEkeEl~~ERD~ 165 (319)
T PF09789_consen 90 ELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQ----SLLDEKEELVTERDA 165 (319)
T ss_pred HHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 6777888888888888877653 44444 556678888888888 999999999999999
Q ss_pred HHHHHHHHhhhHHHH
Q 028818 101 LTNTVRKLQRDVSKL 115 (203)
Q Consensus 101 La~TvKkL~rDvaKL 115 (203)
...-+-+||.++..+
T Consensus 166 yk~K~~RLN~ELn~~ 180 (319)
T PF09789_consen 166 YKCKAHRLNHELNYI 180 (319)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988653
No 31
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=93.56 E-value=1.1 Score=43.55 Aligned_cols=71 Identities=18% Similarity=0.236 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 028818 54 ALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (203)
Q Consensus 54 ~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~ 128 (203)
+++.|+.--...-..+..++...|.+|+ ...+|+.+|.+|+-.+..|++.|.+++-.+|+.+=.+.+-+.+
T Consensus 31 ~~~aq~~~~~a~~~ai~a~~~~~E~~l~----~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~ 101 (459)
T KOG0288|consen 31 RLSAQLVILRAESRAIKAKLQEKELELN----RLQEENTQLNEERVREEATEKTLTVDVLIAENLRIRSLNEIRE 101 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444444 4445566666666666677777777777777766655554443
No 32
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=93.49 E-value=1.4 Score=32.32 Aligned_cols=58 Identities=26% Similarity=0.407 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 47 DLESEHSALRSQLAEKDSRIAELQ---SQIESIYSSLS-DKLGQAQADKERLSKENEALTNTV 105 (203)
Q Consensus 47 ~LE~E~~~LR~~LaEKd~~i~~Lq---~r~s~Le~~L~-~rL~~a~ee~~kL~~E~~~La~Tv 105 (203)
+||+++..||..|.-=.+++...+ +.+.. |+.-. .+|..+-+++.+|..|+..|..-.
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~-ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el 63 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRR-ERDSAERQLGDAYEENNKLKEENEALRKEL 63 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888888888854333333222 22222 32222 677788888888888888887663
No 33
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=93.38 E-value=1.7 Score=39.64 Aligned_cols=77 Identities=19% Similarity=0.334 Sum_probs=44.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSKENEALTNTVRKLQ 109 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~----------~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (203)
++...+..||.|...|.+.|.+=+..-.+|.+.+..++.+.. .......-+...+.+|+++|.+++.-..
T Consensus 47 ~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~ 126 (314)
T PF04111_consen 47 ELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYAS 126 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666555555555555555555544 1112222333455677777777777777
Q ss_pred hhHHHHH
Q 028818 110 RDVSKLE 116 (203)
Q Consensus 110 rDvaKLE 116 (203)
.++.+|+
T Consensus 127 ~~L~~L~ 133 (314)
T PF04111_consen 127 NQLDRLR 133 (314)
T ss_dssp HHHHCHH
T ss_pred HHHHHHH
Confidence 6666665
No 34
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=93.29 E-value=1.8 Score=42.87 Aligned_cols=83 Identities=17% Similarity=0.344 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHH------hhhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 028818 31 DVARKITSIAIST------RVSDLESEHSALRSQLAEKDSRI-------AELQSQIESIYSSLS---DKLGQAQADKERL 94 (203)
Q Consensus 31 dlarkIts~A~at------RVs~LE~E~~~LR~~LaEKd~~i-------~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL 94 (203)
.=||++..-+-+. -+.+|+.|+..||.++.++.... .+...+++.+++++. .|.+...++...|
T Consensus 95 ~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~L 174 (546)
T KOG0977|consen 95 ATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRL 174 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3466776665443 36678888888888888874443 455667777887777 7888888888888
Q ss_pred HHHHHHHHHHHHHHhhhHH
Q 028818 95 SKENEALTNTVRKLQRDVS 113 (203)
Q Consensus 95 ~~E~~~La~TvKkL~rDva 113 (203)
.+|+..|-..+..+..++.
T Consensus 175 k~en~rl~~~l~~~r~~ld 193 (546)
T KOG0977|consen 175 KAENSRLREELARARKQLD 193 (546)
T ss_pred HHHhhhhHHHHHHHHHHHH
Confidence 8888888877777665444
No 35
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=93.20 E-value=1.9 Score=43.18 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 028818 94 LSKENEALTNTVRKLQRD 111 (203)
Q Consensus 94 L~~E~~~La~TvKkL~rD 111 (203)
|.++.+.+...+..+...
T Consensus 901 l~~~~~~l~~~~~~~~~~ 918 (1164)
T TIGR02169 901 LERKIEELEAQIEKKRKR 918 (1164)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 36
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=93.06 E-value=2.1 Score=37.45 Aligned_cols=75 Identities=27% Similarity=0.403 Sum_probs=55.8
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028818 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (203)
Q Consensus 43 tRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (203)
-|--+||++..-+...+++-+.....|+.-+.-...+=+ ++-..+.++-..|..|+...-.++.+|+|.|.-|+.
T Consensus 105 irR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~ 182 (192)
T PF11180_consen 105 IRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQR 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567777777766666666666666654443332222 788889999999999999999999999999998874
No 37
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=93.00 E-value=1.2 Score=44.98 Aligned_cols=39 Identities=33% Similarity=0.486 Sum_probs=34.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 37 TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIES 75 (203)
Q Consensus 37 ts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~ 75 (203)
..-+...|...||.|+.+||..|..|++.+..|+..+..
T Consensus 539 ~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~ 577 (697)
T PF09726_consen 539 CAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQE 577 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344688999999999999999999999999999887743
No 38
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=93.00 E-value=2 Score=37.09 Aligned_cols=53 Identities=25% Similarity=0.366 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHH------HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 29 QLDVARKITSIA------ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 29 QLdlarkIts~A------~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
||.-|..+..-| +..|+..+|.++.+.-.++..-...|.+|+.++..+...|.
T Consensus 100 ~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk 158 (237)
T PF00261_consen 100 QLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLK 158 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH
Confidence 555565555543 45666666776666666666666666666666666655554
No 39
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=92.88 E-value=3.3 Score=33.84 Aligned_cols=41 Identities=24% Similarity=0.460 Sum_probs=17.6
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
+..++..++++...++.....-.......++++..++..+.
T Consensus 100 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 140 (191)
T PF04156_consen 100 LQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIK 140 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333344444444444444443
No 40
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=92.81 E-value=5.6 Score=34.09 Aligned_cols=77 Identities=18% Similarity=0.309 Sum_probs=52.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~------~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (203)
.....|..+..|..+|+.-|..-...+.+|+.++...+..-. .|+....++...|.-|...|...+.++.++-.
T Consensus 45 ~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~Erd 124 (201)
T PF13851_consen 45 RNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERD 124 (201)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567777777777777777777777777777766665433 66777777777777777777777776666655
Q ss_pred HHH
Q 028818 114 KLE 116 (203)
Q Consensus 114 KLE 116 (203)
-|.
T Consensus 125 eL~ 127 (201)
T PF13851_consen 125 ELY 127 (201)
T ss_pred HHH
Confidence 544
No 41
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=92.63 E-value=3.2 Score=37.92 Aligned_cols=84 Identities=27% Similarity=0.410 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHHHH-------hhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 29 QLDVARKITSIAIST-------RVS---DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKEN 98 (203)
Q Consensus 29 QLdlarkIts~A~at-------RVs---~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~ 98 (203)
-++|.||=..||+.. ||- .|-.....+|.+|.|-...-.+|.+++..++..+- ..+++...|..||
T Consensus 104 D~elvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~e----e~~erlk~le~E~ 179 (290)
T COG4026 104 DVELVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYE----EVQERLKRLEVEN 179 (290)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 357788888887642 221 33344556677777666667777777778887776 4455555555555
Q ss_pred HHHHHHHHHHhhhHHHHH
Q 028818 99 EALTNTVRKLQRDVSKLE 116 (203)
Q Consensus 99 ~~La~TvKkL~rDvaKLE 116 (203)
+.|..-.|+|-..|.+|+
T Consensus 180 s~LeE~~~~l~~ev~~L~ 197 (290)
T COG4026 180 SRLEEMLKKLPGEVYDLK 197 (290)
T ss_pred HHHHHHHHhchhHHHHHH
Confidence 555555555555555544
No 42
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=92.58 E-value=1.3 Score=37.98 Aligned_cols=61 Identities=30% Similarity=0.431 Sum_probs=38.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------DKLGQAQADKERLSKENEALTNTVR 106 (203)
Q Consensus 46 s~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~-------~rL~~a~ee~~kL~~E~~~La~TvK 106 (203)
..|..++..+..++.+++..|..|+.++.-....++ .|...+..++..|..|...|-+.++
T Consensus 121 eeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klk 188 (194)
T PF15619_consen 121 EELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLK 188 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777788888888888888888888877777666 3334444444444444444444443
No 43
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=92.53 E-value=5.1 Score=32.89 Aligned_cols=46 Identities=15% Similarity=0.335 Sum_probs=20.0
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 25 DPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIE 74 (203)
Q Consensus 25 DP~EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s 74 (203)
--||||. |-...|..++..=..|+.+||.....--+.+...++++.
T Consensus 42 iDFeqLk----ien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~ 87 (177)
T PF13870_consen 42 IDFEQLK----IENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLH 87 (177)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466663 334444444444444444444444333333333333333
No 44
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.52 E-value=3.2 Score=37.52 Aligned_cols=28 Identities=18% Similarity=0.414 Sum_probs=11.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 028818 100 ALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (203)
Q Consensus 100 ~La~TvKkL~rDvaKLE~FKk~LmqSLq 127 (203)
.|...+..++..+..++.-|..+...++
T Consensus 234 el~~el~~l~~~i~~~~~~k~~l~~eI~ 261 (325)
T PF08317_consen 234 ELQEELEELEEKIEELEEQKQELLAEIA 261 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444333
No 45
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=92.45 E-value=2.5 Score=31.32 Aligned_cols=35 Identities=20% Similarity=0.402 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028818 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (203)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (203)
..+....++++.|....++|...|..|+..|.+|.
T Consensus 35 ~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rLs 69 (70)
T PF04899_consen 35 HMFEQTSQENAALSEQVNNLSQQVQRLSEQLERLS 69 (70)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34448888888999999999999999999998874
No 46
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=92.37 E-value=6.6 Score=38.02 Aligned_cols=97 Identities=25% Similarity=0.335 Sum_probs=78.3
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH------------
Q 028818 28 EQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-----DKLGQAQAD------------ 90 (203)
Q Consensus 28 EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~-----~rL~~a~ee------------ 90 (203)
.||..=.-.+..||..|+...+.=..+|.-+++.+.++|++.+..|..++.++. -|+.+.+-+
T Consensus 263 n~lr~Q~~~ve~af~~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~airdK~~pLKVAqTRle~Rt~RPnvELCr 342 (421)
T KOG2685|consen 263 NDLRTQADAVELAFKKRIRETQDARNKLEWQLAKTLEEIADAENNIEALERAIRDKEGPLKVAQTRLENRTYRPNVELCR 342 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccccHHHHHHHHHHcccCCchHHHH
Confidence 344444445667999999999999999999999999999999999999999998 344444433
Q ss_pred ---HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 028818 91 ---KERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (203)
Q Consensus 91 ---~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~Lmq 124 (203)
+-.|-.|--.|-.||..|...+++=|.=++.|..
T Consensus 343 D~AQ~~L~~EV~~l~~t~~~L~~kL~eA~~~l~~L~~ 379 (421)
T KOG2685|consen 343 DQAQYRLVDEVHELDDTVAALKEKLDEAEDSLKLLVN 379 (421)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888889998888888887777777665
No 47
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=92.15 E-value=1.8 Score=38.49 Aligned_cols=84 Identities=23% Similarity=0.328 Sum_probs=62.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------------
Q 028818 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------------------------------------------- 81 (203)
Q Consensus 46 s~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~-------------------------------------------- 81 (203)
..|+.++..+.+++.+-...|..|+.-+..++....
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siL 81 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSIL 81 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHH
Confidence 468889999999999999999999999988885411
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH------HHHHHhhcccc
Q 028818 82 ----DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF------RKTLVQSLKDD 129 (203)
Q Consensus 82 ----~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F------Kk~LmqSLq~d 129 (203)
..=-.-.++|..|.+|.+.+.+++.+|.++|++|++= |=--|||.+..
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~~~ 139 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYNNK 139 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccc
Confidence 0001224677888888888888888888888877652 34467888764
No 48
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=92.02 E-value=2.2 Score=38.93 Aligned_cols=90 Identities=21% Similarity=0.291 Sum_probs=55.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--------HHHHHHHHHHHH---------
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQA--------QADKERLSKENE--------- 99 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a--------~ee~~kL~~E~~--------- 99 (203)
.+.++...+|.+...|+....++.-.+..++.++..++..+. .++... ......|...-+
T Consensus 258 ~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l 337 (444)
T TIGR03017 258 NLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREAELREALENQKAKVLEL 337 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888888888888888888888888775 122111 111111211111
Q ss_pred -HHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 028818 100 -ALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (203)
Q Consensus 100 -~La~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (203)
........|.||+.--+..=..|++.+++-
T Consensus 338 ~~~~~~~~~L~r~~~~~~~~y~~ll~r~~e~ 368 (444)
T TIGR03017 338 NRQRDEMSVLQRDVENAQRAYDAAMQRYTQT 368 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122345566667766666666777766554
No 49
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=91.99 E-value=2.3 Score=47.55 Aligned_cols=90 Identities=23% Similarity=0.341 Sum_probs=79.1
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-----------DKLGQAQADKERLSKENEALTNTVR 106 (203)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~-----------~rL~~a~ee~~kL~~E~~~La~TvK 106 (203)
..+++....+|+.|...||.++.|=...+.+|+.+++.+..+++ .++....+.+.+|++.-..+...+.
T Consensus 1317 k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e 1396 (1930)
T KOG0161|consen 1317 KSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIE 1396 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34899999999999999999999999999999999999888877 3456677778888888899999999
Q ss_pred HHhhhHHHHHHHHHHHHhhcc
Q 028818 107 KLQRDVSKLEVFRKTLVQSLK 127 (203)
Q Consensus 107 kL~rDvaKLE~FKk~LmqSLq 127 (203)
-++.-.++||.-|..|+|-+.
T Consensus 1397 ~~~~~~~~Lek~k~~l~~el~ 1417 (1930)
T KOG0161|consen 1397 AANAKNASLEKAKNRLQQELE 1417 (1930)
T ss_pred HHHHHHHHHHHHHHHHHhHHH
Confidence 999999999999999988554
No 50
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.96 E-value=4.1 Score=32.81 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=9.8
Q ss_pred HHHHhhhHHHHHHHHHHHHh
Q 028818 105 VRKLQRDVSKLEVFRKTLVQ 124 (203)
Q Consensus 105 vKkL~rDvaKLE~FKk~Lmq 124 (203)
|--|.-||.-|+.+=|..++
T Consensus 98 veEL~~Dv~DlK~myr~Qi~ 117 (120)
T PF12325_consen 98 VEELRADVQDLKEMYREQID 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555554444443
No 51
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=91.91 E-value=4.8 Score=40.01 Aligned_cols=89 Identities=18% Similarity=0.276 Sum_probs=42.8
Q ss_pred HHHhhCCCCchhhHHHHHHH--------HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 028818 17 EVLQVLPSDPFEQLDVARKI--------TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------- 81 (203)
Q Consensus 17 eil~vLP~DP~EQLdlarkI--------ts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~------- 81 (203)
++|-|.|..-+-|-.|-..- ....+...+..|+.++.+|...|.........|+.+...+.....
T Consensus 130 DmLvV~~ka~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~ 209 (546)
T PF07888_consen 130 DMLVVTTKAQLLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERE 209 (546)
T ss_pred ceEEEehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777545443333211 112445555555555666666665555555555554444443332
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 82 ---DKLGQAQADKERLSKENEALTNTV 105 (203)
Q Consensus 82 ---~rL~~a~ee~~kL~~E~~~La~Tv 105 (203)
.++..+.+++.+|..+...|...+
T Consensus 210 ~L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 210 SLKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223334444444444444444444
No 52
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=91.77 E-value=3.5 Score=37.79 Aligned_cols=30 Identities=13% Similarity=0.118 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
...+|.+|++=+..|...+.++..++.+++
T Consensus 206 L~~lk~~l~~~~~ei~~~~~~l~e~~~~l~ 235 (312)
T smart00787 206 LDRAKEKLKKLLQEIMIKVKKLEELEEELQ 235 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444
No 53
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=91.73 E-value=8.5 Score=33.64 Aligned_cols=72 Identities=21% Similarity=0.277 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 028818 51 EHSALRSQLAEKDSRIAELQSQIESIYSSLS-------DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (203)
Q Consensus 51 E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~-------~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (203)
|+..+|.++..-...+..|+.+...|+..+. ..+.........|..|...|-..+....++...|-..|-.|
T Consensus 217 E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~L 295 (312)
T PF00038_consen 217 ELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLDVKLAL 295 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444555555444444444444444444443 33333444555666666666666666666666666666544
No 54
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=91.71 E-value=1.1 Score=36.48 Aligned_cols=32 Identities=28% Similarity=0.441 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (203)
Q Consensus 49 E~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L 80 (203)
..++..|+.++.+-...+..|+..+..|...+
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~ 109 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELASLSSEP 109 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33444444444444444444444444444333
No 55
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=91.58 E-value=6.4 Score=39.38 Aligned_cols=76 Identities=22% Similarity=0.333 Sum_probs=39.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------------DKLGQAQADKERLSKENEALTNTVRK 107 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~------------~rL~~a~ee~~kL~~E~~~La~TvKk 107 (203)
-|..|+..|-.++..|+.....=-++|.+|+..+..|..++. ..-....++...|.+|+..|...+..
T Consensus 26 ~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqa 105 (617)
T PF15070_consen 26 QWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQA 105 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666665555555555566655555555444 11112333445555565555555555
Q ss_pred HhhhHHHH
Q 028818 108 LQRDVSKL 115 (203)
Q Consensus 108 L~rDvaKL 115 (203)
..++...|
T Consensus 106 qv~~ne~L 113 (617)
T PF15070_consen 106 QVENNEQL 113 (617)
T ss_pred HHHHHHHH
Confidence 44443333
No 56
>PRK02224 chromosome segregation protein; Provisional
Probab=91.57 E-value=4.6 Score=40.23 Aligned_cols=12 Identities=8% Similarity=-0.006 Sum_probs=6.8
Q ss_pred CchhhHHHHHHH
Q 028818 25 DPFEQLDVARKI 36 (203)
Q Consensus 25 DP~EQLdlarkI 36 (203)
+-||+++-..+=
T Consensus 162 ~~~e~~~~~~~~ 173 (880)
T PRK02224 162 GKLEEYRERASD 173 (880)
T ss_pred HHHHHHHHHHHH
Confidence 666666554433
No 57
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=91.53 E-value=2.4 Score=40.80 Aligned_cols=39 Identities=21% Similarity=0.443 Sum_probs=20.9
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 43 tRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
.|..+...|++.+...+.+....-..|++.+..++.++.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~ 76 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIA 76 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566665555555555555555555544444443
No 58
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=91.49 E-value=1.2 Score=48.29 Aligned_cols=77 Identities=25% Similarity=0.375 Sum_probs=50.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHH----------HHH-------HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLA----------EKD-------SRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENE 99 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~La----------EKd-------~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~ 99 (203)
||.+++..+|..+...|..|. +-+ +.|.++.+++..+|..|. .-+..+..+..-|++|.+
T Consensus 1198 ay~s~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~ 1277 (1758)
T KOG0994|consen 1198 AYASRFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFN 1277 (1758)
T ss_pred hhHhHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHH
Confidence 889999999988888887772 112 222233333333333333 223344556678999999
Q ss_pred HHHHHHHHHhhhHHHHH
Q 028818 100 ALTNTVRKLQRDVSKLE 116 (203)
Q Consensus 100 ~La~TvKkL~rDvaKLE 116 (203)
.|-+|+|.|...+.||+
T Consensus 1278 ~l~~~~keL~e~~~~ik 1294 (1758)
T KOG0994|consen 1278 GLLTTYKELREQLEKIK 1294 (1758)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999888865
No 59
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=91.26 E-value=5.7 Score=34.07 Aligned_cols=99 Identities=24% Similarity=0.324 Sum_probs=56.8
Q ss_pred ChHHHHhhCCCCchhhHHHHHHHHHH---------HHHHhhhh----------hHHHHHHHHHHHHHH-------HHHHH
Q 028818 14 LPEEVLQVLPSDPFEQLDVARKITSI---------AISTRVSD----------LESEHSALRSQLAEK-------DSRIA 67 (203)
Q Consensus 14 lp~eil~vLP~DP~EQLdlarkIts~---------A~atRVs~----------LE~E~~~LR~~LaEK-------d~~i~ 67 (203)
|-++|...==+||-..|+.=.+..+. ++..|+.+ +-.+..++-.++.++ +.+|.
T Consensus 55 l~e~v~~l~idd~~~~f~~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~ 134 (190)
T PF05266_consen 55 LAEKVKKLQIDDSRSSFESLMKTLSELEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIK 134 (190)
T ss_pred HHHHHHHcccCCcHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 44455555556666666655555443 44444443 344455666666655 77777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028818 68 ELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (203)
Q Consensus 68 ~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (203)
+|+.++..|+.+.+ .....+..-.+|...|..-+.+++.++...|
T Consensus 135 ~Le~ki~el~~~~~----~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 135 ELEMKILELQRQAA----KLKEKKEAKDKEISRLKSEAEALKEEIENAE 179 (190)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777776654 2333333334666666666666666666554
No 60
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=91.16 E-value=0.4 Score=42.16 Aligned_cols=35 Identities=31% Similarity=0.473 Sum_probs=32.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIE 74 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s 74 (203)
-|.+.+.++|.||..||+-|+-|++|..+|..|+-
T Consensus 48 elr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKLG 82 (208)
T KOG4010|consen 48 ELRTELAKVEEEIVTLRQVLAAKERHAAELKRKLG 82 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 68889999999999999999999999999998863
No 61
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=91.15 E-value=2.4 Score=41.44 Aligned_cols=70 Identities=21% Similarity=0.298 Sum_probs=37.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhh
Q 028818 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLG----QAQADKERLSKENEALTNTVRKLQR 110 (203)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~----~a~ee~~kL~~E~~~La~TvKkL~r 110 (203)
+..+|..++.++..|..+=..=..+...|++|-..++..++.++. +..++..+|++|+..|...+-.|.+
T Consensus 64 lva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~ 137 (472)
T TIGR03752 64 LVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQR 137 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555444443344556777777777777773332 3344555555555555555555544
No 62
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=91.15 E-value=7 Score=35.37 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=10.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLA 60 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~La 60 (203)
.+..|-..|+.|+..||+...
T Consensus 181 ~l~~~~~~L~~e~~~Lk~~~~ 201 (325)
T PF08317_consen 181 KLRERKAELEEELENLKQLVE 201 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555444
No 63
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=91.09 E-value=7 Score=33.50 Aligned_cols=85 Identities=21% Similarity=0.302 Sum_probs=58.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 028818 40 AISTRVSDLESEHSALRSQLA--EKDSRI-AELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~La--EKd~~i-~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (203)
-+.--+..++.|+..||.+|. +||... ..++.|+..++..|. ---....+...+|..|++.|-.+....-.||.
T Consensus 59 ~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evq 138 (201)
T PF13851_consen 59 RLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQ 138 (201)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556778888888888887 555443 344555555555554 22236677888999999999988888888888
Q ss_pred HHHHHHHHHHh
Q 028818 114 KLEVFRKTLVQ 124 (203)
Q Consensus 114 KLE~FKk~Lmq 124 (203)
.==.||-.|++
T Consensus 139 Qk~~~kn~lLE 149 (201)
T PF13851_consen 139 QKTGLKNLLLE 149 (201)
T ss_pred HHHHHHHHHHH
Confidence 77777766654
No 64
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=91.02 E-value=10 Score=37.35 Aligned_cols=85 Identities=28% Similarity=0.398 Sum_probs=56.6
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHH-------HHHHH
Q 028818 37 TSIAISTRVSDLESEHSALRSQLAE------------------------KDSRIAELQSQIESIYSSL-------SDKLG 85 (203)
Q Consensus 37 ts~A~atRVs~LE~E~~~LR~~LaE------------------------Kd~~i~~Lq~r~s~Le~~L-------~~rL~ 85 (203)
..|-+-.||.+||.|-+-|-.+|.+ --.||.-|+..|..|-..| +.++.
T Consensus 202 lvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~ 281 (552)
T KOG2129|consen 202 LVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLM 281 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778999999999988887742 1234455555555544444 45555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 028818 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (203)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~Lmq 124 (203)
+-.++.....+||..| -+||.+.|.|=|++=|+|-.
T Consensus 282 qy~~Ee~~~reen~rl---QrkL~~e~erRealcr~lsE 317 (552)
T KOG2129|consen 282 QYRAEEVDHREENERL---QRKLINELERREALCRMLSE 317 (552)
T ss_pred HHHHHHhhHHHHHHHH---HHHHHHHHHHHHHHHHHhhh
Confidence 5555555555555554 47899999999999888865
No 65
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=90.95 E-value=3.6 Score=42.28 Aligned_cols=88 Identities=19% Similarity=0.293 Sum_probs=56.3
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH------------HHHH
Q 028818 35 KITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLS------------KENE 99 (203)
Q Consensus 35 kIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~------------~E~~ 99 (203)
|++--|+++- -+-|+|+..|+++|..--..-..+++|++.||.+|. -.|+.+++++.+.- +.+.
T Consensus 10 kvaeeav~gw-ekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~ 88 (769)
T PF05911_consen 10 KVAEEAVSGW-EKAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKS 88 (769)
T ss_pred HHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHH
Confidence 5555666654 356888888888888888888888888888888888 66777777664332 2333
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Q 028818 100 ALTNTVRKLQRDVSKLEVFRKTLV 123 (203)
Q Consensus 100 ~La~TvKkL~rDvaKLE~FKk~Lm 123 (203)
.|...+-.+++.++++.+=-.+|-
T Consensus 89 ~le~~l~e~~~~l~~~~~e~~~l~ 112 (769)
T PF05911_consen 89 ELEAKLAELSKRLAESAAENSALS 112 (769)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHH
Confidence 444444445554444443333333
No 66
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=90.68 E-value=5.4 Score=33.90 Aligned_cols=30 Identities=23% Similarity=0.436 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 47 DLESEHSALRSQLAEKDSRIAELQSQIESI 76 (203)
Q Consensus 47 ~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~L 76 (203)
.++..+..|..++.+....|.+|++++..+
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555544
No 67
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=90.61 E-value=4.5 Score=35.76 Aligned_cols=41 Identities=12% Similarity=0.115 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cccccCC
Q 028818 92 ERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQS-LKDDEDA 132 (203)
Q Consensus 92 ~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqS-Lq~d~~~ 132 (203)
.++..|++...+.+.++..++.+|+.+=-.+..+ |+-+.-.
T Consensus 70 kqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lgl~~Lp 111 (230)
T PF10146_consen 70 KQAESERNKRQEKIQRLYEEYKPLKDEINELRKEYLGLEPLP 111 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 3445667777777888888888888877777777 6665543
No 68
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=90.61 E-value=1.6 Score=44.10 Aligned_cols=84 Identities=26% Similarity=0.430 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhHHHHH
Q 028818 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYS---SLSDKLGQAQADKERLSKENEALTNT-------VRKLQRDVSKLE 116 (203)
Q Consensus 47 ~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~---~L~~rL~~a~ee~~kL~~E~~~La~T-------vKkL~rDvaKLE 116 (203)
+||+|+.+||..|.--...-.||+.+++.|+. .+..=|.+..++++.|+.....|... +..|.|.++-..
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~ 501 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEER 501 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999776655 33355556666666666655555432 223333333333
Q ss_pred HHHHHHHhhccccc
Q 028818 117 VFRKTLVQSLKDDE 130 (203)
Q Consensus 117 ~FKk~LmqSLq~d~ 130 (203)
.-|..|=..|+++-
T Consensus 502 ~~R~~lEkQL~eEr 515 (697)
T PF09726_consen 502 RQRASLEKQLQEER 515 (697)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444555543
No 69
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=90.59 E-value=8.4 Score=42.16 Aligned_cols=111 Identities=20% Similarity=0.257 Sum_probs=74.0
Q ss_pred ChHHHHh-hCCCCchhhHHHHHHHHHH---------------HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 14 LPEEVLQ-VLPSDPFEQLDVARKITSI---------------AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (203)
Q Consensus 14 lp~eil~-vLP~DP~EQLdlarkIts~---------------A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le 77 (203)
+.++||. +||.+|.+=..|+-+|... +=..|+..|++|+.+-|.....-.....+.++-+...+
T Consensus 1497 vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad 1576 (1758)
T KOG0994|consen 1497 VAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEAD 1576 (1758)
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4455554 7999999888888777654 33578999999999988887755555555555555555
Q ss_pred HHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH----HHHHHHHh
Q 028818 78 SSLS----------DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE----VFRKTLVQ 124 (203)
Q Consensus 78 ~~L~----------~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE----~FKk~Lmq 124 (203)
.+.. .-+..+.+...|.++|-..-..++..-+..|++|| .+|...||
T Consensus 1577 ~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~q 1637 (1758)
T KOG0994|consen 1577 VAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQ 1637 (1758)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5544 34455666667777777666666666666666554 45555554
No 70
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=90.57 E-value=6 Score=38.89 Aligned_cols=85 Identities=13% Similarity=0.200 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHH
Q 028818 28 EQLDVARKITSIAISTRVSDLES-EHSALRSQLAEKDSRIAELQSQIESIYSSLS-----------------DKLGQAQA 89 (203)
Q Consensus 28 EQLdlarkIts~A~atRVs~LE~-E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~-----------------~rL~~a~e 89 (203)
.||+--|+--. .+++++|. ++..+|+.+.++-....+|+...+.++.+-+ ..|....|
T Consensus 328 sqleSqr~y~e----~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E 403 (493)
T KOG0804|consen 328 SQLESQRKYYE----QIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEERE 403 (493)
T ss_pred hhhhHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777665443 77777776 7888887777666555554433333333222 33334556
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028818 90 DKERLSKENEALTNTVRKLQRDVSKLE 116 (203)
Q Consensus 90 e~~kL~~E~~~La~TvKkL~rDvaKLE 116 (203)
++..|.+..+...+++|+++....+.-
T Consensus 404 ~n~~l~knq~vw~~kl~~~~e~~~~~~ 430 (493)
T KOG0804|consen 404 ENKKLIKNQDVWRGKLKELEEREKEAL 430 (493)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 666666666666667777666555443
No 71
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=90.52 E-value=6.7 Score=35.99 Aligned_cols=77 Identities=16% Similarity=0.274 Sum_probs=34.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028818 41 ISTRVSDLESEHSALRSQLAEKD----SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (203)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd----~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (203)
+..|...|+.|+..||+.-.|-+ .....+++++..+..++ ....++-..+..++..++-++....
T Consensus 177 l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei-----------~~~~~~l~e~~~~l~~l~~~I~~~~ 245 (312)
T smart00787 177 LRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEI-----------MIKVKKLEELEEELQELESKIEDLT 245 (312)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555544444422 23444444444443333 3334444444444444444444444
Q ss_pred HHHHHHHhhccc
Q 028818 117 VFRKTLVQSLKD 128 (203)
Q Consensus 117 ~FKk~LmqSLq~ 128 (203)
.-|..+...+++
T Consensus 246 ~~k~e~~~~I~~ 257 (312)
T smart00787 246 NKKSELNTEIAE 257 (312)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 72
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=90.51 E-value=2.5 Score=37.26 Aligned_cols=73 Identities=14% Similarity=0.218 Sum_probs=55.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFR 119 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FK 119 (203)
+.+++...||++..+++++.+...+.|+-.+ .-. ....++++.|.++.++|....+-|.-+|+|++-=+
T Consensus 78 ~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K-------~~~----e~tEer~~el~kklnslkk~~e~lr~el~k~~e~d 146 (203)
T KOG3433|consen 78 DRKSVLQELESQLATGSQKKATLGESIENRK-------AGR----EETEERTDELTKKLNSLKKILESLRWELAKIQETD 146 (203)
T ss_pred HHHHHHHHHHHHHHHhhhhHhHHHHHHHHHH-------hhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 6788999999999999999888877665443 111 24556666999999999999999999999987544
Q ss_pred HHHH
Q 028818 120 KTLV 123 (203)
Q Consensus 120 k~Lm 123 (203)
-++.
T Consensus 147 pqv~ 150 (203)
T KOG3433|consen 147 PQVF 150 (203)
T ss_pred HHHH
Confidence 4443
No 73
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=90.44 E-value=1.6 Score=33.19 Aligned_cols=41 Identities=27% Similarity=0.447 Sum_probs=33.5
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028818 71 SQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRD 111 (203)
Q Consensus 71 ~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rD 111 (203)
.++-.|+..|. +|.....+++.||..||.-|..-|..|.+.
T Consensus 23 ~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 23 QEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666666 888899999999999999999999988654
No 74
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=90.10 E-value=11 Score=32.05 Aligned_cols=82 Identities=24% Similarity=0.321 Sum_probs=45.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (203)
....|+..|..++..+|..+.++.+.+.++++.+......+. ...........++..+...+...+..+.+.+..-.
T Consensus 67 ~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r 146 (302)
T PF10186_consen 67 ELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRR 146 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777788888888888888777777777666666555554 22222222233333333334444444444444443
Q ss_pred HHHHH
Q 028818 117 VFRKT 121 (203)
Q Consensus 117 ~FKk~ 121 (203)
...-.
T Consensus 147 ~~l~~ 151 (302)
T PF10186_consen 147 RQLIQ 151 (302)
T ss_pred HHHHH
Confidence 33333
No 75
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=90.05 E-value=13 Score=32.81 Aligned_cols=83 Identities=14% Similarity=0.257 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-----------HHHHHHHHHHHHHHHHHHHHHH----HHHH
Q 028818 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----D-----------KLGQAQADKERLSKENEALTNT----VRKL 108 (203)
Q Consensus 48 LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~----~-----------rL~~a~ee~~kL~~E~~~La~T----vKkL 108 (203)
+..++..+...++..+..+..+++++..+...++ + +-+.+.+.....+.+.+.+.++ +..|
T Consensus 133 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l 212 (301)
T PF14362_consen 133 FDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQLDAAQAELDTLQAQIDAAIAAL 212 (301)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4446666666666666666666666666666665 1 2344444444444444444444 4444
Q ss_pred h----hhHHHHHHHHHHHHhhccccc
Q 028818 109 Q----RDVSKLEVFRKTLVQSLKDDE 130 (203)
Q Consensus 109 ~----rDvaKLE~FKk~LmqSLq~d~ 130 (203)
+ ...+.|...+.......+.+.
T Consensus 213 ~~~~~~~~~~l~~~~~~~~a~~~~~~ 238 (301)
T PF14362_consen 213 DAQIAARKARLDEARQAKVAEFQAII 238 (301)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhHhh
Confidence 4 555666666666666555544
No 76
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.03 E-value=5.8 Score=40.23 Aligned_cols=64 Identities=19% Similarity=0.268 Sum_probs=39.3
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVR 106 (203)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvK 106 (203)
.++..||..|..+......+|.+-.+.+..|+++...|. +|+..+.+.+++|.+.-+.+.+.+.
T Consensus 561 ~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~La----eR~e~a~d~Qe~L~~R~~~vl~~l~ 624 (717)
T PF10168_consen 561 EEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLA----ERYEEAKDKQEKLMKRVDRVLQLLN 624 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467777777777777666666666666666655554444 4555666666666665555554443
No 77
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=89.99 E-value=13 Score=32.93 Aligned_cols=42 Identities=19% Similarity=0.312 Sum_probs=23.1
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (203)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L 80 (203)
..+..++..++.++..++.++..-.+.+..++.++..++..+
T Consensus 140 ~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~ 181 (423)
T TIGR01843 140 STLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEEL 181 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666666555555555555544444433
No 78
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=89.95 E-value=11 Score=36.99 Aligned_cols=68 Identities=22% Similarity=0.259 Sum_probs=41.7
Q ss_pred ChHHHHhhCCCCchhhHHHHHHH---------HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 14 LPEEVLQVLPSDPFEQLDVARKI---------TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 14 lp~eil~vLP~DP~EQLdlarkI---------ts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
|-+.+-.+|==+++++|.-=-.+ ....+..++..||.++..+..++.+....+..++.++..++..+.
T Consensus 171 l~~Ai~~LlGl~~~~~L~~dl~~~~~~~~~~~~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~ 247 (650)
T TIGR03185 171 LKEAIEVLLGLDLIDRLAGDLTNVLRRRKKSELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLE 247 (650)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666677776421111 112555677777777777777777777667666666666666554
No 79
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=89.89 E-value=4.1 Score=37.96 Aligned_cols=41 Identities=20% Similarity=0.343 Sum_probs=27.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L 80 (203)
.+..++..||.+...|+....++.-.+.+|++++..++..+
T Consensus 251 ~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l 291 (498)
T TIGR03007 251 ELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQK 291 (498)
T ss_pred chHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHH
Confidence 44566777777777777766666666666666666666654
No 80
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=89.64 E-value=6.8 Score=29.02 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028818 86 QAQADKERLSKENEALTNTVRKL 108 (203)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL 108 (203)
...++|.+|..|+......++.|
T Consensus 43 ~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 43 ELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555554444
No 81
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=89.62 E-value=2.6 Score=38.38 Aligned_cols=58 Identities=28% Similarity=0.433 Sum_probs=44.2
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTN 103 (203)
Q Consensus 42 atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~ 103 (203)
..++..++.+....+.+|.++...+.++++++..|+.++. .+..++.+|..+......
T Consensus 220 ~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~----~~~~e~~~l~~~~~~~~~ 277 (344)
T PF12777_consen 220 RQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYE----EAQKEKQELEEEIEETER 277 (344)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHh
Confidence 4677788888888899999999999999988888888887 566666666665544443
No 82
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=89.57 E-value=3.3 Score=30.36 Aligned_cols=55 Identities=24% Similarity=0.415 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH----HHHHHH
Q 028818 63 DSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL----EVFRKT 121 (203)
Q Consensus 63 d~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL----E~FKk~ 121 (203)
+..|..|+.++..+++.+. ....++..|..||+..+..+-....+..+| |++|+.
T Consensus 4 ea~~~~Lr~rLd~~~rk~~----~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNS----VHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999998888776 778889999999999888887777766654 455554
No 83
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.57 E-value=4.6 Score=42.87 Aligned_cols=75 Identities=4% Similarity=0.214 Sum_probs=37.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028818 40 AISTRVSDLESEHSALRSQLAEK--DSRIAELQSQIESIYSSLS--------DKLGQAQADKERLSKENEALTNTVRKLQ 109 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEK--d~~i~~Lq~r~s~Le~~L~--------~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (203)
++...+..++.+-+.++..|.-+ ...+.+++.++..|+.++. .-+....++...|..++..|..++++|.
T Consensus 1002 ~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le 1081 (1311)
T TIGR00606 1002 LMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYE 1081 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555544 5555666666666665554 2233344444445444444444555544
Q ss_pred hhHHH
Q 028818 110 RDVSK 114 (203)
Q Consensus 110 rDvaK 114 (203)
.+|+.
T Consensus 1082 ~qi~~ 1086 (1311)
T TIGR00606 1082 KEIKH 1086 (1311)
T ss_pred HHHHH
Confidence 44444
No 84
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=89.54 E-value=5.9 Score=39.63 Aligned_cols=86 Identities=26% Similarity=0.423 Sum_probs=53.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKD----------------SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTN 103 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd----------------~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~ 103 (203)
....||..||..+..|+.++++.. +.+..|++++..|+..|+ .-..++..|..-+.....
T Consensus 47 ~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlq----aqv~~ne~Ls~L~~EqEe 122 (617)
T PF15070_consen 47 HDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQ----AQVENNEQLSRLNQEQEE 122 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 567899999999999999887332 234556666666666555 444455566555555555
Q ss_pred HHHHHhhhHHHHHHHH---HHHHhhcccc
Q 028818 104 TVRKLQRDVSKLEVFR---KTLVQSLKDD 129 (203)
Q Consensus 104 TvKkL~rDvaKLE~FK---k~LmqSLq~d 129 (203)
.+..|.+.|..++... ..|+..++.|
T Consensus 123 rL~ELE~~le~~~e~~~D~~kLLe~lqsd 151 (617)
T PF15070_consen 123 RLAELEEELERLQEQQEDRQKLLEQLQSD 151 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 5666666665555542 3344444443
No 85
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=89.52 E-value=7.4 Score=38.75 Aligned_cols=81 Identities=19% Similarity=0.328 Sum_probs=41.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 028818 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (203)
Q Consensus 43 tRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~----------~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (203)
.++...+.|-..|......=......|++++..|+.+|. .+..........|.+|++.|.....++...+
T Consensus 143 ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri 222 (546)
T PF07888_consen 143 NQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRI 222 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333444555666666665554 1222333444556666666666666665555
Q ss_pred HHHHHHHHHHH
Q 028818 113 SKLEVFRKTLV 123 (203)
Q Consensus 113 aKLE~FKk~Lm 123 (203)
..||.=.++|-
T Consensus 223 ~~LEedi~~l~ 233 (546)
T PF07888_consen 223 RELEEDIKTLT 233 (546)
T ss_pred HHHHHHHHHHH
Confidence 55554444443
No 86
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=89.37 E-value=7.2 Score=34.37 Aligned_cols=78 Identities=22% Similarity=0.400 Sum_probs=47.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKER-------LSKENEALTNTVRKLQ 109 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~k-------L~~E~~~La~TvKkL~ 109 (203)
-|--|+..+|.+..+.+..|.+....+..|.++...++.+-. .+-..+.+++.. ..+|+..|+.-+..+.
T Consensus 9 Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~ 88 (246)
T PF00769_consen 9 ELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAE 88 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788889999999999998888888888777766555433 333334444433 3456666666776666
Q ss_pred hhHHHHHH
Q 028818 110 RDVSKLEV 117 (203)
Q Consensus 110 rDvaKLE~ 117 (203)
..+++|+.
T Consensus 89 ~~i~~l~e 96 (246)
T PF00769_consen 89 AEIARLEE 96 (246)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
No 87
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=89.31 E-value=11 Score=30.96 Aligned_cols=79 Identities=22% Similarity=0.355 Sum_probs=62.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 028818 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (203)
Q Consensus 46 s~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (203)
-+|.-|...|..++.||...+..|+.++..-=..|. .+|.....++..+..+-......+.++..++.+++.=+..+
T Consensus 45 eqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~ 124 (177)
T PF13870_consen 45 EQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKL 124 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677889999999999999999988876666666 88888888888888888888888888888887776655544
Q ss_pred Hh
Q 028818 123 VQ 124 (203)
Q Consensus 123 mq 124 (203)
-.
T Consensus 125 ~~ 126 (177)
T PF13870_consen 125 RK 126 (177)
T ss_pred HH
Confidence 44
No 88
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=89.23 E-value=3.7 Score=40.52 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=18.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 028818 102 TNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (203)
Q Consensus 102 a~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (203)
......|.|++.-.+..=..|++.+++-
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~ll~r~~e~ 402 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYESYLTNYRQA 402 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555677777777776666777766554
No 89
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=89.19 E-value=5.7 Score=44.66 Aligned_cols=89 Identities=20% Similarity=0.363 Sum_probs=71.6
Q ss_pred hhHHHHHHHHH-----HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 028818 28 EQLDVARKITS-----IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENE 99 (203)
Q Consensus 28 EQLdlarkIts-----~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~ 99 (203)
|.++++-.|.. .+..+.=.+||.+|..|...|+|......-..+|+..+..... .-|..-.+.+.+|...|.
T Consensus 1696 e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~Eq~~~~~le~~k~ 1775 (1930)
T KOG0161|consen 1696 ELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKEQETSQKLERLKK 1775 (1930)
T ss_pred HHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33444444443 3666777889999999999999999999999999998888777 788888899999999999
Q ss_pred HHHHHHHHHhhhHHHHH
Q 028818 100 ALTNTVRKLQRDVSKLE 116 (203)
Q Consensus 100 ~La~TvKkL~rDvaKLE 116 (203)
+|..+||.|.-.+..+|
T Consensus 1776 ~LE~~~kdLq~rL~e~E 1792 (1930)
T KOG0161|consen 1776 SLERQVKDLQLRLDEAE 1792 (1930)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998876555544
No 90
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=89.18 E-value=6.3 Score=40.34 Aligned_cols=89 Identities=19% Similarity=0.286 Sum_probs=58.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIE-------SIYSSLS----------DKLGQAQADKERLSKENEALT 102 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s-------~Le~~L~----------~rL~~a~ee~~kL~~E~~~La 102 (203)
.|..|+..||.|+..+|..+......+..|..... .+|.+.. -|=...++|...|.+||=+|.
T Consensus 31 ~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQ 110 (717)
T PF09730_consen 31 YLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQ 110 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 57889999999999999998866555544443333 3333322 222344567788888888888
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhcccc
Q 028818 103 NTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (203)
Q Consensus 103 ~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (203)
.+|-.|...=--+|.||--+ ..|.+|
T Consensus 111 Kqvs~Lk~sQvefE~~Khei-~rl~Ee 136 (717)
T PF09730_consen 111 KQVSVLKQSQVEFEGLKHEI-KRLEEE 136 (717)
T ss_pred HHHHHHHHhHHHHHHHHHHH-HHHHHH
Confidence 88888777666677776443 334443
No 91
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=89.02 E-value=5.2 Score=38.07 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=49.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL---------------------SDKLGQAQADKERLSKEN 98 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L---------------------~~rL~~a~ee~~kL~~E~ 98 (203)
+...++..|+.++..|+.++++-...+..++.++.-|+.-- .+-+....++..+|..+.
T Consensus 68 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (525)
T TIGR02231 68 PDPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTED 147 (525)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557777777777777777777777766666665554432 022223334556666777
Q ss_pred HHHHHHHHHHhhhHHHHHH
Q 028818 99 EALTNTVRKLQRDVSKLEV 117 (203)
Q Consensus 99 ~~La~TvKkL~rDvaKLE~ 117 (203)
..|...+++|.+.+++|+.
T Consensus 148 ~~~~~~~~~~~~~l~~l~~ 166 (525)
T TIGR02231 148 REAERRIRELEKQLSELQN 166 (525)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777644
No 92
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=89.00 E-value=7.6 Score=40.81 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHH
Q 028818 92 ERLSKENEALTNTVRKLQRDVSKL 115 (203)
Q Consensus 92 ~kL~~E~~~La~TvKkL~rDvaKL 115 (203)
..|.++-+.+...+..+...+.++
T Consensus 887 ~~l~~~l~~~~~~~~~~~~~~~~~ 910 (1163)
T COG1196 887 EELEEELRELESELAELKEEIEKL 910 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 93
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=88.84 E-value=5.4 Score=42.50 Aligned_cols=34 Identities=29% Similarity=0.392 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 028818 92 ERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQS 125 (203)
Q Consensus 92 ~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqS 125 (203)
..+..++...++-.+-|.+.|.+||..-..|-..
T Consensus 390 ~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e 423 (1074)
T KOG0250|consen 390 NELGSELEERENKLEQLKKEVEKLEEQINSLREE 423 (1074)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666677777777777777744444433
No 94
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=88.79 E-value=11 Score=37.80 Aligned_cols=73 Identities=22% Similarity=0.409 Sum_probs=51.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~------~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (203)
|++++..+-=.-+.+|.....+|+.+|..|+++...|-.++. .-...-.++.++|.+|-+-.--..-+|.+.|
T Consensus 320 ~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V 398 (622)
T COG5185 320 AMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSV 398 (622)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 333333333344778888889999999999999999998887 5556666777777777666655555555554
No 95
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=88.59 E-value=2.3 Score=42.93 Aligned_cols=56 Identities=29% Similarity=0.477 Sum_probs=42.7
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028818 55 LRSQLA----EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQR 110 (203)
Q Consensus 55 LR~~La----EKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~r 110 (203)
||+||. +|++++..+..++..+.......|.....+.++|+.||.-|.+-+|.+..
T Consensus 2 LRdkL~~Lq~ek~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~~s~ 61 (654)
T PF09798_consen 2 LRDKLELLQQEKQKERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELRSLSS 61 (654)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455554 78888888888888888777766667777778888888888887777653
No 96
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=88.55 E-value=12 Score=39.40 Aligned_cols=40 Identities=20% Similarity=0.368 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 028818 85 GQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (203)
Q Consensus 85 ~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~Lmq 124 (203)
.....+...|......+.+.++.+.+++.++..-...+.+
T Consensus 442 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (1163)
T COG1196 442 EELNEELEELEEQLEELRDRLKELERELAELQEELQRLEK 481 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555666666666666666665554444433
No 97
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.41 E-value=11 Score=40.20 Aligned_cols=52 Identities=12% Similarity=0.227 Sum_probs=33.1
Q ss_pred HHHHHHHHH-HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 30 LDVARKITS-IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 30 LdlarkIts-~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
+.++.++.. ..|..++..|..++..++..+.+.+..|..|+.++..+...+.
T Consensus 874 lkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 926 (1311)
T TIGR00606 874 LQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKE 926 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 334443433 2566666667777777777777777777777777776666664
No 98
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.39 E-value=8.1 Score=38.78 Aligned_cols=42 Identities=19% Similarity=0.415 Sum_probs=26.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
++.+|...++..+..|...+.+|..+|..|+.....|-..+-
T Consensus 284 ~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 284 QMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIE 325 (581)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666666666666666666655543
No 99
>PRK09039 hypothetical protein; Validated
Probab=88.07 E-value=6.1 Score=36.39 Aligned_cols=9 Identities=11% Similarity=0.191 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 028818 72 QIESIYSSL 80 (203)
Q Consensus 72 r~s~Le~~L 80 (203)
++..++.+|
T Consensus 117 ~~~~l~~~L 125 (343)
T PRK09039 117 RAGELAQEL 125 (343)
T ss_pred HHHHHHHHH
Confidence 333333333
No 100
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=87.96 E-value=8.3 Score=33.83 Aligned_cols=64 Identities=17% Similarity=0.248 Sum_probs=39.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028818 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQ 109 (203)
Q Consensus 46 s~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (203)
..|+.|++.||.-+..=.+....|..+...+|.+-+ +++....++|.+|..|.+-|....+-|+
T Consensus 63 K~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~ 129 (193)
T PF14662_consen 63 KALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELA 129 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHH
Confidence 345666666666666666666666666666666655 5555566666666666665555555543
No 101
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=87.91 E-value=2.9 Score=32.45 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhH
Q 028818 91 KERLSKENEALTNTVRKLQRDV 112 (203)
Q Consensus 91 ~~kL~~E~~~La~TvKkL~rDv 112 (203)
..++..+-+.|..+++-++|.+
T Consensus 74 l~el~G~~~~l~~~l~~v~~~~ 95 (106)
T PF10805_consen 74 LAELRGELKELSARLQGVSHQL 95 (106)
T ss_pred HHHHHhHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 102
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=87.90 E-value=13 Score=32.40 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=11.9
Q ss_pred HHHhhhhhHHHHHHHHHHHH
Q 028818 41 ISTRVSDLESEHSALRSQLA 60 (203)
Q Consensus 41 ~atRVs~LE~E~~~LR~~La 60 (203)
|-.||..||.+-..|..++.
T Consensus 16 YIekVr~LE~~N~~Le~~i~ 35 (312)
T PF00038_consen 16 YIEKVRFLEQENKRLESEIE 35 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHH
Confidence 55666666666555555554
No 103
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=87.87 E-value=6.6 Score=39.73 Aligned_cols=73 Identities=23% Similarity=0.277 Sum_probs=42.6
Q ss_pred HhhhhhHHHHHHHHHHHHHH------H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 028818 43 TRVSDLESEHSALRSQLAEK------D--SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (203)
Q Consensus 43 tRVs~LE~E~~~LR~~LaEK------d--~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (203)
+|+-.||.|++.||.+++.- + ..|..+...+...|...+--.........-|++|+....++|.+|.+.+..
T Consensus 249 ~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~ 328 (629)
T KOG0963|consen 249 QRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKA 328 (629)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888899999998887621 1 223444444444444443222333344455666777777777777766654
Q ss_pred H
Q 028818 115 L 115 (203)
Q Consensus 115 L 115 (203)
.
T Consensus 329 ~ 329 (629)
T KOG0963|consen 329 K 329 (629)
T ss_pred H
Confidence 3
No 104
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=87.85 E-value=3.2 Score=36.83 Aligned_cols=71 Identities=24% Similarity=0.392 Sum_probs=38.4
Q ss_pred HHHhhhhhHH------HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028818 41 ISTRVSDLES------EHSALRSQLAE---KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRD 111 (203)
Q Consensus 41 ~atRVs~LE~------E~~~LR~~LaE---Kd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rD 111 (203)
+-.+.-.+++ +...+|.++.- ..+.+..+.+....|+.+++ ....+-+++++.+++|..++..++++
T Consensus 119 ll~~l~~l~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~----~~~~~Le~~~~~~~al~Kq~e~~~~E 194 (216)
T KOG1962|consen 119 LLRELATLRANEKAMKENEALKKQLENSSKLEEENDKLKADLEKLETELE----KKQKKLEKAQKKVDALKKQSEGLQDE 194 (216)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 3444444454 55555555542 23334444444445554444 45555566666666666666666666
Q ss_pred HHHH
Q 028818 112 VSKL 115 (203)
Q Consensus 112 vaKL 115 (203)
-++|
T Consensus 195 ydrL 198 (216)
T KOG1962|consen 195 YDRL 198 (216)
T ss_pred HHHH
Confidence 6655
No 105
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=87.83 E-value=9.1 Score=35.65 Aligned_cols=100 Identities=26% Similarity=0.401 Sum_probs=55.6
Q ss_pred chhhHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 028818 26 PFEQLDVARKITSIAIST---RVSDLESEHSALRSQLAE-KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKE---- 97 (203)
Q Consensus 26 P~EQLdlarkIts~A~at---RVs~LE~E~~~LR~~LaE-Kd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E---- 97 (203)
|..|=+|++|=..-=++- |+..=|.||..||.||+- ++.-|++= --..|++|. |++|+.|+.+|..-
T Consensus 62 PLQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEE---CHRVEAQLA--LKEARkEIkQLkQvieTm 136 (305)
T PF15290_consen 62 PLQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEE---CHRVEAQLA--LKEARKEIKQLKQVIETM 136 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 567888988665544433 223334556666666552 22222221 222344443 78999999888764
Q ss_pred HHHHHHHHH-------HHhhhHHHHHHHHHH--HH--hhccccc
Q 028818 98 NEALTNTVR-------KLQRDVSKLEVFRKT--LV--QSLKDDE 130 (203)
Q Consensus 98 ~~~La~TvK-------kL~rDvaKLE~FKk~--Lm--qSLq~d~ 130 (203)
|++|+..=| ..|-+--|||+|=+. |- .+++|+.
T Consensus 137 rssL~ekDkGiQKYFvDINiQN~KLEsLLqsMElAq~g~~rde~ 180 (305)
T PF15290_consen 137 RSSLAEKDKGIQKYFVDINIQNKKLESLLQSMELAQSGSLRDEG 180 (305)
T ss_pred HhhhchhhhhHHHHHhhhhhhHhHHHHHHHHHHHHHhccccccC
Confidence 455555433 344566789998663 22 2566653
No 106
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=87.77 E-value=9.7 Score=30.35 Aligned_cols=65 Identities=29% Similarity=0.358 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 028818 48 LESEHSALRSQLA-EKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (203)
Q Consensus 48 LE~E~~~LR~~La-EKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (203)
|=.|-..||.+.. =|...| +=|.+...|...|. ..|+...+|+.-|.=-|+.|...|-.|+-++.
T Consensus 3 la~eYsKLraQ~~vLKKaVi-eEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 3 LAQEYSKLRAQNQVLKKAVI-EEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777666 344444 33456666666555 23335555555555555555555544444444
No 107
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=87.72 E-value=10 Score=39.07 Aligned_cols=72 Identities=32% Similarity=0.391 Sum_probs=44.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSKENEALTNTVRKLQ 109 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~----------~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (203)
|.-.+-..|-+++.+||..|.+|...+...+..+..++.+.. +.+.....+...|++..++|..+++.=.
T Consensus 333 ~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd 412 (775)
T PF10174_consen 333 AKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKD 412 (775)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556667777777777777777777666666666665544 4445555555666666666666665433
Q ss_pred hh
Q 028818 110 RD 111 (203)
Q Consensus 110 rD 111 (203)
+.
T Consensus 413 ~q 414 (775)
T PF10174_consen 413 RQ 414 (775)
T ss_pred HH
Confidence 33
No 108
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.70 E-value=19 Score=36.22 Aligned_cols=88 Identities=18% Similarity=0.334 Sum_probs=54.0
Q ss_pred HHHHhhhhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 028818 40 AISTRVSDLESEHSALRSQL-------AEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVR------ 106 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L-------aEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvK------ 106 (203)
+..+|...|+-..++|+..+ ..-..+...+...++.+-.++ ....+++.+|+++++.|-+.|.
T Consensus 256 k~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Ei----e~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~ 331 (581)
T KOG0995|consen 256 KDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEI----EEKEEEIEKLQKENDELKKQIELQGISG 331 (581)
T ss_pred cCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 34445555555555444444 444444444444444444444 4888999999999999988875
Q ss_pred -----------HHhhhHHHHHHHHHHHHhhcccccC
Q 028818 107 -----------KLQRDVSKLEVFRKTLVQSLKDDED 131 (203)
Q Consensus 107 -----------kL~rDvaKLE~FKk~LmqSLq~d~~ 131 (203)
+|.|+|.++..=+-.|++.+-+-+.
T Consensus 332 ~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l 367 (581)
T KOG0995|consen 332 EDVERMNLERNKLKRELNKIQSELDRLSKEVWELKL 367 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4666777766666666666655543
No 109
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=87.70 E-value=12 Score=29.86 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028818 55 LRSQLAEKDSRIAELQSQIESIY 77 (203)
Q Consensus 55 LR~~LaEKd~~i~~Lq~r~s~Le 77 (203)
|+.+|.+|+..|..++..+.+|.
T Consensus 31 L~e~Lk~ke~~LRk~eqE~dSL~ 53 (102)
T PF10205_consen 31 LKEQLKEKEQALRKLEQENDSLT 53 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 110
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=87.69 E-value=5.1 Score=36.61 Aligned_cols=76 Identities=18% Similarity=0.222 Sum_probs=54.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFR 119 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FK 119 (203)
-++.+...+-.|-..|+..+.+++....++|+|+..|+.+.+ ...++-.+|-.|-..|......|.-.|.-+|.|.
T Consensus 139 e~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s----~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~~~ 214 (290)
T COG4026 139 ELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENS----RLEEMLKKLPGEVYDLKKRWDELEPGVELPEEEL 214 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhchhHHHHHHHHHHHhcccccchHHHH
Confidence 566777888888888899999999888888888888888776 5555555555566666655555655555555554
No 111
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=87.67 E-value=13 Score=29.92 Aligned_cols=72 Identities=25% Similarity=0.403 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhHHHHHHHHHHHHhhccc
Q 028818 53 SALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEAL---TNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (203)
Q Consensus 53 ~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~L---a~TvKkL~rDvaKLE~FKk~LmqSLq~ 128 (203)
.+|-..+.-++-.+..|+.++..|+.+=. .+.++..+|.++++.+ ...+..|.+++..|+.==.++++=|++
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~----~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGE 93 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERD----ELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGE 93 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444444555556666666666665554 5666666666666444 445556666666666544455554443
No 112
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=87.65 E-value=8.8 Score=29.24 Aligned_cols=52 Identities=19% Similarity=0.271 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTN 103 (203)
Q Consensus 48 LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~ 103 (203)
|=.+-..|+.+|.+|+++|..|..-+.+|...|+ .-.+-+.+|+.+...+..
T Consensus 3 Li~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLi----KYt~LnkkLq~~~~~~~~ 54 (76)
T PF11544_consen 3 LIKQNKELKKKLNDKQEEIDRLNILVGSLRGKLI----KYTELNKKLQDQLLNLQR 54 (76)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHh
Confidence 3456788999999999999988877777776666 667777777777766654
No 113
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=87.54 E-value=2.8 Score=30.06 Aligned_cols=38 Identities=26% Similarity=0.474 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRK 107 (203)
Q Consensus 66 i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKk 107 (203)
|.+|+.++..++..+. ....++.+|.++...+..+||+
T Consensus 2 i~elEn~~~~~~~~i~----tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 2 IDELENELPRIESSIN----TVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555443 3333444444444444444433
No 114
>PRK02119 hypothetical protein; Provisional
Probab=87.30 E-value=4.5 Score=29.84 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=14.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 028818 100 ALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (203)
Q Consensus 100 ~La~TvKkL~rDvaKLE~FKk~LmqSLq~ 128 (203)
.|..+|.+.++++++|+.-=+.|.+.|.+
T Consensus 27 ~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 27 ELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555554555555544
No 115
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=87.30 E-value=19 Score=31.23 Aligned_cols=40 Identities=15% Similarity=0.292 Sum_probs=19.2
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 42 atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
-.|+.++..|...|.+.+..-.+.+..|+.....++..+.
T Consensus 41 Q~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~ 80 (251)
T PF11932_consen 41 QKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVA 80 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444444444444444444444443
No 116
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=87.22 E-value=11 Score=39.34 Aligned_cols=73 Identities=22% Similarity=0.292 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028818 52 HSALRSQLAEKDSRIAELQSQIE-----------SIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (203)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s-----------~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (203)
+.+|+.++.++...++.+..|.. +.+.-|+ ...-+++|+++.|..|-+++.+++-.++++=.||-+
T Consensus 165 ~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~ 244 (916)
T KOG0249|consen 165 TRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRT 244 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55566666666666655554432 1222233 456688999999999999999999999999998888
Q ss_pred HHHHHHh
Q 028818 118 FRKTLVQ 124 (203)
Q Consensus 118 FKk~Lmq 124 (203)
|+-.|-+
T Consensus 245 d~E~Lr~ 251 (916)
T KOG0249|consen 245 DIEDLRG 251 (916)
T ss_pred hHHHHHH
Confidence 8876655
No 117
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=87.20 E-value=11 Score=36.37 Aligned_cols=68 Identities=15% Similarity=0.264 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 028818 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (203)
Q Consensus 50 ~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~ 121 (203)
.+....+..++++...|.+-+++...|+.+|. ....++..+..+....++++++++++++-++.-+..
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk----~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~ 105 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLK----SLETEIASLEAQLIETADDLKKLRKQIADLNARLNA 105 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHH
Confidence 44566666666666667666666666666665 555666666666666666666666666555544333
No 118
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=86.86 E-value=12 Score=32.26 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=35.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
..+..-+.+...|++.||.+|-.....+.+++.++-..+.++.
T Consensus 57 ~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~ 99 (194)
T PF15619_consen 57 AELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELL 99 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677888889999999988888888888888888887776
No 119
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=86.80 E-value=9 Score=31.73 Aligned_cols=32 Identities=31% Similarity=0.533 Sum_probs=29.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQS 71 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~ 71 (203)
+...++..++.|...|+.+|.+.+..|.+|+.
T Consensus 17 ~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 17 APKAKVDKVKEERDNLKTQLKEADKQIKDLKK 48 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999987
No 120
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=86.67 E-value=13 Score=31.90 Aligned_cols=35 Identities=29% Similarity=0.454 Sum_probs=30.9
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQI 73 (203)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~ 73 (203)
..|..-+.++|.||..||+-|+-|.++.++|++|+
T Consensus 32 eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 32 EELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34566688899999999999999999999999885
No 121
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=86.48 E-value=5.9 Score=44.34 Aligned_cols=54 Identities=33% Similarity=0.514 Sum_probs=41.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENE 99 (203)
Q Consensus 46 s~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~ 99 (203)
.+|.++|++|...|.+|+++|++|..+...+...++.++.....++..|.++-.
T Consensus 1310 ~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ 1363 (1822)
T KOG4674|consen 1310 EKLKSEISRLKEELEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELE 1363 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778999999999999999999999998886666555555555555544433
No 122
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=86.43 E-value=18 Score=30.33 Aligned_cols=80 Identities=16% Similarity=0.221 Sum_probs=50.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFR 119 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FK 119 (203)
+....+-.|..+...|..+...+...-...+.++..+|..+...-+........|+.++..|...++.+.-.+++|+.=.
T Consensus 47 ~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e 126 (158)
T PF09744_consen 47 EHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEERE 126 (158)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhH
Confidence 33334445555555555555544444455556666667666655566677777888888888877777777777776433
No 123
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=86.38 E-value=5.1 Score=28.92 Aligned_cols=31 Identities=26% Similarity=0.398 Sum_probs=13.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhccccc
Q 028818 100 ALTNTVRKLQRDVSKLEVFRKTLVQSLKDDE 130 (203)
Q Consensus 100 ~La~TvKkL~rDvaKLE~FKk~LmqSLq~d~ 130 (203)
.|..+|...++++.+|+.-=+.|...|.+-.
T Consensus 22 ~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 22 ELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555555555555555555555555433
No 124
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=86.32 E-value=8.7 Score=39.58 Aligned_cols=65 Identities=26% Similarity=0.383 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Q 028818 33 ARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSKENEALT 102 (203)
Q Consensus 33 arkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~----------~rL~~a~ee~~kL~~E~~~La 102 (203)
+.+..+.+.++|+ .+++.+|..|+..|..++.++..++.+.. .-|..+.++...|+.+++.|-
T Consensus 277 ~~~s~~~~mK~k~-------d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr 349 (775)
T PF10174_consen 277 VYKSHSLAMKSKM-------DRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALR 349 (775)
T ss_pred HHHhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3455666666663 45555555555555555555555544443 122344455555555555544
Q ss_pred HH
Q 028818 103 NT 104 (203)
Q Consensus 103 ~T 104 (203)
.-
T Consensus 350 ~r 351 (775)
T PF10174_consen 350 FR 351 (775)
T ss_pred HH
Confidence 33
No 125
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=86.21 E-value=16 Score=33.40 Aligned_cols=16 Identities=31% Similarity=0.397 Sum_probs=9.3
Q ss_pred hhhhHHHHHHHHHHHH
Q 028818 45 VSDLESEHSALRSQLA 60 (203)
Q Consensus 45 Vs~LE~E~~~LR~~La 60 (203)
|-.|.+++..||.++.
T Consensus 284 v~~l~~~i~~l~~~l~ 299 (444)
T TIGR03017 284 YKRAQAEINSLKSQLN 299 (444)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555666666666654
No 126
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=86.18 E-value=15 Score=30.39 Aligned_cols=70 Identities=23% Similarity=0.346 Sum_probs=37.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 028818 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (203)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (203)
+.+....|+.|...||..-.+=+......+.||+.|+.... ..|....++..++.+ .+...|-.|..++.
T Consensus 64 lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e---~~~~~ve~L~~ql~ 136 (140)
T PF10473_consen 64 LTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLKE---ESKSAVEMLQKQLK 136 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Confidence 44455556666666664333333344455555777776665 444566666444433 34445555554443
No 127
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=86.05 E-value=9.7 Score=31.13 Aligned_cols=62 Identities=23% Similarity=0.340 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 028818 62 KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENE-----ALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (203)
Q Consensus 62 Kd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~-----~La~TvKkL~rDvaKLE~FKk~LmqSLq 127 (203)
|+....+|++++..+|.+|+ +..-+..++..|.. .+.+--...+...++++..|+.|.+-++
T Consensus 18 K~~l~~~l~~~i~~~d~el~----QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~ 84 (131)
T PF11068_consen 18 KEELLQELQEQIQQLDQELQ----QLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLE 84 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888888888888887 55666666666654 4444446667777777777777766544
No 128
>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]
Probab=85.96 E-value=5.6 Score=37.32 Aligned_cols=82 Identities=21% Similarity=0.261 Sum_probs=60.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----HHHH
Q 028818 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV----SKLE 116 (203)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv----aKLE 116 (203)
.+.|..+||.-|..= -.|...-+..+.+..+.++. |.+|+..-.++..+++.-|.-|-+-|+++.-|| .||+
T Consensus 3 ~k~~~~~~~~~i~k~---nee~~~~~~~~~k~~e~~qk-l~sr~~~~~ekke~i~r~n~k~~d~v~~~~~~~~~~~erl~ 78 (359)
T KOG4398|consen 3 CKMRIEQLKQTICKG---NEEMEKNSEGLLKTKEKNQK-LYSRAQRHQEKKEKIQRHNRKLGDLVEKKTIDLRSHYERLA 78 (359)
T ss_pred hhHHHHHHHHHHhcC---cHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHH
Confidence 456666666555433 23555556666665555444 336888999999999999999999999988764 7999
Q ss_pred HHHHHHHhhc
Q 028818 117 VFRKTLVQSL 126 (203)
Q Consensus 117 ~FKk~LmqSL 126 (203)
+++++-++-|
T Consensus 79 ~lr~shi~el 88 (359)
T KOG4398|consen 79 NLRRSHILEL 88 (359)
T ss_pred HHHHHHHHHH
Confidence 9999987755
No 129
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=85.94 E-value=4.8 Score=29.02 Aligned_cols=46 Identities=15% Similarity=0.417 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028818 68 ELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (203)
Q Consensus 68 ~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (203)
++++|+..+|..+- ...++..+|..-...+...++.++.++.+++.
T Consensus 3 ~i~e~l~~ie~~l~----~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 3 DIKEKLNRIETKLD----NHEERIDKLEKRDAANEKDIKNLNKQLEKIKS 48 (71)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555554332 44455555555555666667777777777765
No 130
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=85.68 E-value=11 Score=27.07 Aligned_cols=81 Identities=22% Similarity=0.375 Sum_probs=54.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKD-----SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd-----~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (203)
.+..++..|+.+...+...+.... ..+...+.-+..|+..+. ........+..+-..+-..+....+++.+
T Consensus 16 ~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~----~~~~~~~~~~~~~~~~r~~l~~a~~~~k~ 91 (123)
T PF02050_consen 16 EAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQ----QQQQELERLEQEVEQAREELQEARRERKK 91 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777777776666 555555555555555544 77777888888888888888888899988
Q ss_pred HHHHHHHHHh
Q 028818 115 LEVFRKTLVQ 124 (203)
Q Consensus 115 LE~FKk~Lmq 124 (203)
+|.++-.-..
T Consensus 92 ~e~L~e~~~~ 101 (123)
T PF02050_consen 92 LEKLKERRRE 101 (123)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888765443
No 131
>PRK04406 hypothetical protein; Provisional
Probab=85.63 E-value=6.9 Score=29.07 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 028818 66 IAELQSQIESIYSSLS 81 (203)
Q Consensus 66 i~~Lq~r~s~Le~~L~ 81 (203)
|..|++|+..||..+.
T Consensus 6 ~~~le~Ri~~LE~~lA 21 (75)
T PRK04406 6 IEQLEERINDLECQLA 21 (75)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456666666666554
No 132
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=85.58 E-value=12 Score=34.24 Aligned_cols=64 Identities=17% Similarity=0.337 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 028818 51 EHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (203)
Q Consensus 51 E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (203)
|....+.++..+..++..+++.+...|..+. .|+....++..+|..|...|..+|..+.--|.|
T Consensus 194 eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~k 260 (269)
T PF05278_consen 194 EKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEK 260 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444 455555555666666666666666666544444
No 133
>PRK12704 phosphodiesterase; Provisional
Probab=85.57 E-value=30 Score=33.80 Aligned_cols=12 Identities=8% Similarity=0.473 Sum_probs=6.1
Q ss_pred HHHHHHhhcccc
Q 028818 118 FRKTLVQSLKDD 129 (203)
Q Consensus 118 FKk~LmqSLq~d 129 (203)
.|+.||..+.++
T Consensus 155 a~~~l~~~~~~~ 166 (520)
T PRK12704 155 AKEILLEKVEEE 166 (520)
T ss_pred HHHHHHHHHHHH
Confidence 455555555444
No 134
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=85.52 E-value=3.7 Score=34.04 Aligned_cols=68 Identities=21% Similarity=0.312 Sum_probs=32.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAE-LQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRD 111 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~-Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rD 111 (203)
.+..++..+|.+...++.+.......... ..+....++.++. ...++..+...|.+.|..+++.|+++
T Consensus 122 ~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~----~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 122 SLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIE----KLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555555566555555554433222221 1122222233332 44444445566666666666666653
No 135
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=85.44 E-value=17 Score=36.73 Aligned_cols=78 Identities=22% Similarity=0.360 Sum_probs=60.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhHH
Q 028818 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKE-------RLSKENEALTNTVRKLQRDVS 113 (203)
Q Consensus 44 RVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~-------kL~~E~~~La~TvKkL~rDva 113 (203)
|=..|+.||++||..+.+-+..|..++..++.-|.++. ++++....+.. +-..+...|..-.++|+..|.
T Consensus 80 ~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~~~~~ 159 (632)
T PF14817_consen 80 RRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQGQVE 159 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66789999999999999999999999999999888887 55555555443 344566677777777777777
Q ss_pred HHHHHHHH
Q 028818 114 KLEVFRKT 121 (203)
Q Consensus 114 KLE~FKk~ 121 (203)
.|+...|.
T Consensus 160 ~~q~~~R~ 167 (632)
T PF14817_consen 160 QLQDIQRK 167 (632)
T ss_pred HHHHHHhh
Confidence 77766554
No 136
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=85.43 E-value=9.3 Score=29.65 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 028818 88 QADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (203)
Q Consensus 88 ~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (203)
.++..+|.-+-..+...++.++..+.-++..
T Consensus 64 ~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~ 94 (106)
T PF10805_consen 64 RDDVHDLQLELAELRGELKELSARLQGVSHQ 94 (106)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4555566666666666666666555554433
No 137
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=85.30 E-value=32 Score=33.61 Aligned_cols=12 Identities=8% Similarity=0.476 Sum_probs=6.2
Q ss_pred HHHHHHhhcccc
Q 028818 118 FRKTLVQSLKDD 129 (203)
Q Consensus 118 FKk~LmqSLq~d 129 (203)
.|..||..+.++
T Consensus 149 ak~~l~~~~~~~ 160 (514)
T TIGR03319 149 AKEILLEEVEEE 160 (514)
T ss_pred HHHHHHHHHHHH
Confidence 455555555444
No 138
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=85.27 E-value=5.7 Score=36.95 Aligned_cols=71 Identities=27% Similarity=0.367 Sum_probs=54.8
Q ss_pred HHHHHHHHhhhhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 36 ITSIAISTRVSDLESEH-------SALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTV 105 (203)
Q Consensus 36 Its~A~atRVs~LE~E~-------~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~Tv 105 (203)
|.-+|--+|+.+||.|. ..||.+-.|=+.+|.+|-+-|......+. .+|+..+.++..|.+++..+...|
T Consensus 229 lG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav 308 (330)
T KOG2991|consen 229 LGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAV 308 (330)
T ss_pred HHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34467778999999885 46777777888888888888877777655 888888888888888887776665
Q ss_pred H
Q 028818 106 R 106 (203)
Q Consensus 106 K 106 (203)
+
T Consensus 309 ~ 309 (330)
T KOG2991|consen 309 G 309 (330)
T ss_pred c
Confidence 4
No 139
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=85.16 E-value=11 Score=37.31 Aligned_cols=17 Identities=29% Similarity=0.350 Sum_probs=9.5
Q ss_pred hhhhhHHHHHHHHHHHH
Q 028818 44 RVSDLESEHSALRSQLA 60 (203)
Q Consensus 44 RVs~LE~E~~~LR~~La 60 (203)
+|..+++++..|++++.
T Consensus 317 ~v~~l~~qi~~l~~~i~ 333 (754)
T TIGR01005 317 RVVAAKSSLADLDAQIR 333 (754)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35555556666665554
No 140
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=85.03 E-value=8.3 Score=32.89 Aligned_cols=21 Identities=43% Similarity=0.615 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHhhhHHHH
Q 028818 95 SKENEALTNTVRKLQRDVSKL 115 (203)
Q Consensus 95 ~~E~~~La~TvKkL~rDvaKL 115 (203)
...|+.|.+-+.||..|+.+|
T Consensus 94 ~~~N~~L~~dl~klt~~~~~l 114 (182)
T PF15035_consen 94 RKANEALQEDLQKLTQDWERL 114 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666653
No 141
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=84.99 E-value=7.9 Score=39.86 Aligned_cols=61 Identities=28% Similarity=0.396 Sum_probs=45.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 028818 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEAL 101 (203)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~L 101 (203)
+..|+..+-+|...|...|.+|+..|.+|.+.-+..|..+. .||....-+|.-|.=|-..|
T Consensus 97 ~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~ 160 (769)
T PF05911_consen 97 LSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVL 160 (769)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777788888889999999999999999998876 66666666665555544444
No 142
>PRK02793 phi X174 lysis protein; Provisional
Probab=84.99 E-value=6.9 Score=28.74 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=10.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhccc
Q 028818 103 NTVRKLQRDVSKLEVFRKTLVQSLKD 128 (203)
Q Consensus 103 ~TvKkL~rDvaKLE~FKk~LmqSLq~ 128 (203)
..|-..+++++.|+.-=+.|.+.|.+
T Consensus 29 ~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 29 VTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444433
No 143
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=84.84 E-value=11 Score=40.68 Aligned_cols=42 Identities=21% Similarity=0.354 Sum_probs=38.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
+=..|+..|+.++..|+.++++.++.+..|+.++..|..++.
T Consensus 739 ~R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~ 780 (1353)
T TIGR02680 739 ARLRRIAELDARLAAVDDELAELARELRALGARQRALADELA 780 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445689999999999999999999999999999999999877
No 144
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=84.76 E-value=25 Score=30.41 Aligned_cols=53 Identities=13% Similarity=0.126 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 28 EQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 28 EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
.+++-+..........+. ....++..+-++-.+-.+.|..|++++..|+....
T Consensus 21 ~~~~~~~~~~~~~~~~~~-~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~ 73 (251)
T PF11932_consen 21 ATLDQAQQVQQQWVQAAQ-QSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNE 73 (251)
T ss_pred ccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555444442 23334555555555555555555555555555443
No 145
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=84.59 E-value=13 Score=26.94 Aligned_cols=56 Identities=30% Similarity=0.395 Sum_probs=36.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028818 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (203)
Q Consensus 46 s~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (203)
+.||+||+. |...-.+|. ++-.-...+..||..+...|..|..|.+.|...+..+.
T Consensus 4 saL~~Eira-------kQ~~~eEL~-kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 4 SALEAEIRA-------KQAIQEELT-KVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHH-------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHH-------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 457777653 444444553 34444444448888999888888888777777666553
No 146
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=84.47 E-value=7.8 Score=28.53 Aligned_cols=35 Identities=34% Similarity=0.505 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 028818 84 LGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (203)
Q Consensus 84 L~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (203)
+.+..++..+|.+-.-.+.++||||...+..+|.-
T Consensus 14 Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~ 48 (74)
T PF12329_consen 14 IAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQ 48 (74)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34778888888888888888888888888777643
No 147
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=84.41 E-value=4.7 Score=39.49 Aligned_cols=48 Identities=31% Similarity=0.412 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 58 QLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTV 105 (203)
Q Consensus 58 ~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~Tv 105 (203)
+|++-.....+|++++..|..+++ .++....++.++|..|+..|..++
T Consensus 70 ALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555544443 222233333334444444444443
No 148
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.39 E-value=9.9 Score=34.68 Aligned_cols=28 Identities=29% Similarity=0.526 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028818 88 QADKERLSKENEALTNTVRKLQRDVSKL 115 (203)
Q Consensus 88 ~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (203)
......+.+|++.+-.-+|+|+.+++.|
T Consensus 65 ~~k~~~~~~~i~~~~~eik~l~~eI~~~ 92 (265)
T COG3883 65 QSKIDELQKEIDQSKAEIKKLQKEIAEL 92 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444333
No 149
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=84.32 E-value=8.8 Score=30.82 Aligned_cols=52 Identities=27% Similarity=0.379 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHhh--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 30 LDVARKITSIAISTRV--------SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 30 LdlarkIts~A~atRV--------s~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
||+||+.-+.-+-.|. ..|+-|+..||..|+-|++.+..+.+++...+.-|.
T Consensus 14 lD~aRq~e~~FlqKr~~LS~~kpe~~lkEEi~eLK~ElqRKe~Ll~Kh~~kI~~w~~lL~ 73 (106)
T PF11594_consen 14 LDVARQMEAFFLQKRFELSAYKPEQVLKEEINELKEELQRKEQLLQKHYEKIDYWEKLLS 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999988887666664 368899999999999999999999999988887665
No 150
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=84.19 E-value=9.9 Score=30.03 Aligned_cols=26 Identities=27% Similarity=0.426 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028818 85 GQAQADKERLSKENEALTNTVRKLQR 110 (203)
Q Consensus 85 ~~a~ee~~kL~~E~~~La~TvKkL~r 110 (203)
....++|+.|.-||..|-..+.++..
T Consensus 32 ~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 32 QELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 37888999999999888877777665
No 151
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=84.17 E-value=11 Score=32.09 Aligned_cols=24 Identities=13% Similarity=0.235 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHH
Q 028818 94 LSKENEALTNTVRKLQRDVSKLEV 117 (203)
Q Consensus 94 L~~E~~~La~TvKkL~rDvaKLE~ 117 (203)
++.++....+.|..|.+.-..|+.
T Consensus 161 ~~~~~k~~~~ei~~lk~~~~ql~~ 184 (189)
T PF10211_consen 161 RQEEEKKHQEEIDFLKKQNQQLKA 184 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555554443
No 152
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=84.15 E-value=17 Score=27.83 Aligned_cols=55 Identities=22% Similarity=0.270 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 028818 68 ELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (203)
Q Consensus 68 ~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (203)
.|++.+...+.-|. .+...|.....+=.+.+.....-+++|..+++.|...+..+
T Consensus 43 ~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~ 100 (126)
T PF13863_consen 43 ELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKL 100 (126)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444 44444444444444444444444444444444444443333
No 153
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=84.14 E-value=19 Score=36.62 Aligned_cols=83 Identities=23% Similarity=0.405 Sum_probs=47.1
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHH
Q 028818 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS----KLE 116 (203)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva----KLE 116 (203)
+-.++..+|.-+.+|+....+=.+.+.+|++.+..|+..|. +++.-.......-+|-..+...+.+|++.+. +.|
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~-~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve 498 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELE-RFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVE 498 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666663 4444444444445555555555555555543 345
Q ss_pred HHHHHHHh
Q 028818 117 VFRKTLVQ 124 (203)
Q Consensus 117 ~FKk~Lmq 124 (203)
-+|+.|-+
T Consensus 499 ~L~~~l~~ 506 (652)
T COG2433 499 ELERKLAE 506 (652)
T ss_pred HHHHHHHH
Confidence 55555544
No 154
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=84.05 E-value=30 Score=31.58 Aligned_cols=71 Identities=20% Similarity=0.297 Sum_probs=37.6
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028818 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRD 111 (203)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rD 111 (203)
...-+..++.|+..|...-.+..+++.+|++....++.++. ..+....++..+.-++.+.+....-.+..+
T Consensus 41 ~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e 114 (314)
T PF04111_consen 41 SEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEE 114 (314)
T ss_dssp -HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666777777777777777777777777777776665 333333333334444444444333333333
No 155
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=83.99 E-value=13 Score=40.57 Aligned_cols=80 Identities=21% Similarity=0.363 Sum_probs=55.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-----
Q 028818 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS----- 113 (203)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva----- 113 (203)
+.+..++..++.|+..|+-|+.+-+ ++..++++..|+.... ...-+.+.+..+...+.+.++++.+++.
T Consensus 1011 ~~l~~q~~e~~re~~~ld~Qi~~~~--~~~~~ee~~~L~~~~~----~l~se~~~~lg~~ke~e~~i~~~k~eL~~~~~k 1084 (1294)
T KOG0962|consen 1011 RNLERKLKELERELSELDKQILEAD--IKSVKEERVKLEEERE----KLSSEKNLLLGEMKQYESQIKKLKQELREKDFK 1084 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHH----HhhhHhhHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 3666777777777777777777655 6666666666666665 5555667777777788888888888887
Q ss_pred -HHHHHHHHHHh
Q 028818 114 -KLEVFRKTLVQ 124 (203)
Q Consensus 114 -KLE~FKk~Lmq 124 (203)
..++|++.++.
T Consensus 1085 d~~~nyr~~~ie 1096 (1294)
T KOG0962|consen 1085 DAEKNYRKALIE 1096 (1294)
T ss_pred cHHHHHHHHHHH
Confidence 46666666654
No 156
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=83.90 E-value=11 Score=39.17 Aligned_cols=38 Identities=32% Similarity=0.404 Sum_probs=28.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 44 RVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
.|+.|++|..+|++.|+.|.+.-..+++-|..+.+++-
T Consensus 496 ~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~ 533 (961)
T KOG4673|consen 496 LITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELT 533 (961)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 68889999999999999888776666665555555543
No 157
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=83.88 E-value=30 Score=30.62 Aligned_cols=52 Identities=17% Similarity=0.401 Sum_probs=31.1
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028818 60 AEKDSRIAEL---QSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (203)
Q Consensus 60 aEKd~~i~~L---q~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (203)
.||.+|..+| ..-++.||..+. .+..+..+..+.-..|-.-+..|-..|.++
T Consensus 46 ~Er~~h~eeLrqI~~DIn~lE~iIk----qa~~er~~~~~~i~r~~eey~~Lk~~in~~ 100 (230)
T PF10146_consen 46 QERMAHVEELRQINQDINTLENIIK----QAESERNKRQEKIQRLYEEYKPLKDEINEL 100 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3888888777 667777887776 555555555554444444444444444443
No 158
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=83.87 E-value=15 Score=36.68 Aligned_cols=41 Identities=22% Similarity=0.420 Sum_probs=19.1
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
+..++..++.++..|+..+..-..++.+.+.....++.++.
T Consensus 340 l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 340 LESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444
No 159
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=83.84 E-value=8.9 Score=37.04 Aligned_cols=46 Identities=26% Similarity=0.328 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-----HHHHHHHHhhccc
Q 028818 83 KLGQAQADKERLSKENEALTNTVRKLQRDVSKL-----EVFRKTLVQSLKD 128 (203)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL-----E~FKk~LmqSLq~ 128 (203)
.+....++..+|.++.+.+...+.++...+++. +.|.+.+..-|++
T Consensus 340 ~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~~~v~~~l~~ 390 (563)
T TIGR00634 340 QLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRKAAERLAKRVEQELKA 390 (563)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444566777778888888888888887777 6777777776654
No 160
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=83.73 E-value=22 Score=34.76 Aligned_cols=36 Identities=22% Similarity=0.311 Sum_probs=23.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 46 s~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
-.|++|.+.++.++.+|+.++.+||+....+-.++.
T Consensus 37 ~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v 72 (459)
T KOG0288|consen 37 VILRAESRAIKAKLQEKELELNRLQEENTQLNEERV 72 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666667777777777777777666665554443
No 161
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=83.68 E-value=4.6 Score=38.84 Aligned_cols=72 Identities=29% Similarity=0.406 Sum_probs=59.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 028818 37 TSIAISTRVSDLESEHSALRSQLAEKD--SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (203)
Q Consensus 37 ts~A~atRVs~LE~E~~~LR~~LaEKd--~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (203)
....+..|+..-|.|+..||.+|..|. ..-.+|+.|+..|...|+ +.....+.|..||.+|.-+..++.+.+
T Consensus 356 ~~s~~~~k~~~ke~E~q~lr~~l~~~~~~s~~~elE~rl~~lt~~Li----~KQ~~lE~l~~ek~al~lqlErl~~~l 429 (511)
T PF09787_consen 356 QKSPLQLKLKEKESEIQKLRNQLSARASSSSWNELESRLTQLTESLI----QKQTQLESLGSEKNALRLQLERLETQL 429 (511)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHhccCCcHhHHHHHhhccHHHH----HHHHHHHHHHhhhhhccccHHHHHHHH
Confidence 455788889999999999999999887 334689999999988887 777788899999999988777766543
No 162
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=83.66 E-value=17 Score=29.64 Aligned_cols=56 Identities=30% Similarity=0.509 Sum_probs=38.7
Q ss_pred HHHhhCCCCchhhHHHHHHH-------------HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 17 EVLQVLPSDPFEQLDVARKI-------------TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIE 74 (203)
Q Consensus 17 eil~vLP~DP~EQLdlarkI-------------ts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s 74 (203)
+++.-|-+.|+-.| +.|+ .++++..|+...|.++.++-.++.|+...+...-+.++
T Consensus 19 ~~leklds~~~l~L--c~R~Q~HL~~cA~~Va~~Q~~L~~riKevd~~~~~l~~~~~erqk~~~k~ae~L~ 87 (131)
T PF10158_consen 19 EVLEKLDSRPVLRL--CSRYQEHLNQCAEAVAFDQNALAKRIKEVDQEIAKLLQQMVERQKRFAKFAEQLE 87 (131)
T ss_pred HHHHccChHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777777776654 3332 34588888888899998888888887766655544443
No 163
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=83.66 E-value=5.5 Score=37.45 Aligned_cols=87 Identities=16% Similarity=0.218 Sum_probs=40.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhhh
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQ--------ADKERLSKENEALTNTVRKLQRD 111 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~--------ee~~kL~~E~~~La~TvKkL~rD 111 (203)
|+-.+...-=.-++.|++.|..=..+-..|..++.+|+..|. +|..-. +...+---|+..|+.-+-+-.++
T Consensus 20 AlhqK~~aKtdairiL~QdLEkfe~Ekd~~a~~aETLeln~e-alere~eLlaa~gc~a~~e~gterqdLaa~i~etkee 98 (389)
T KOG4687|consen 20 ALHQKCGAKTDAIRILGQDLEKFENEKDGLAARAETLELNLE-ALERELELLAACGCDAKIEFGTERQDLAADIEETKEE 98 (389)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-HHHhhhHHHHhcCCCchhhccchhhHHHHHHHHHHHH
Confidence 333333333333455555555444444445555555555553 111100 01122223556666666666666
Q ss_pred HHHHHHHHHHHHhhcc
Q 028818 112 VSKLEVFRKTLVQSLK 127 (203)
Q Consensus 112 vaKLE~FKk~LmqSLq 127 (203)
--||-+=+..|.+.+.
T Consensus 99 NlkLrTd~eaL~dq~a 114 (389)
T KOG4687|consen 99 NLKLRTDREALLDQKA 114 (389)
T ss_pred hHhhhHHHHHHHHHHH
Confidence 6666666666655443
No 164
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=83.64 E-value=9.3 Score=40.96 Aligned_cols=67 Identities=19% Similarity=0.353 Sum_probs=52.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL 108 (203)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL 108 (203)
+.+++.-..-||.-|+.||++|.||.....+|+.-+..++.++. ..++++..+..|..+...-.++|
T Consensus 172 ~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~----klrqe~~e~l~ea~ra~~yrdel 238 (1195)
T KOG4643|consen 172 NLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEIS----KLRQEIEEFLDEAHRADRYRDEL 238 (1195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhhhHH
Confidence 45888888999999999999999999999999999999888886 55666666666555544444333
No 165
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=83.55 E-value=12 Score=38.02 Aligned_cols=51 Identities=20% Similarity=0.347 Sum_probs=27.8
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 028818 53 SALRSQL-AEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTN 103 (203)
Q Consensus 53 ~~LR~~L-aEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~ 103 (203)
..||.+- ..-+..-.++++|+..|..+.. .+|..+.++..+|...-..|+.
T Consensus 546 ~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~Lae 600 (717)
T PF10168_consen 546 KVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAE 600 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566663 3334446778888877777766 3444444444444443333433
No 166
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=83.54 E-value=14 Score=34.64 Aligned_cols=66 Identities=15% Similarity=0.299 Sum_probs=32.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028818 44 RVSDLESEHSALRSQLAEKDSRIAEL------------QSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRD 111 (203)
Q Consensus 44 RVs~LE~E~~~LR~~LaEKd~~i~~L------------q~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rD 111 (203)
.++.++.++..|+.++++....+.++ +.|+..+... .+..+.++..++..+.+.+...+.+....
T Consensus 237 ~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~l~~~~~~l~~~~~~l~~a~~~ 313 (457)
T TIGR01000 237 ILATIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQ---QLAKVKQEITDLNQKLLELESKIKSLKED 313 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666665555554 3333333322 22344444455555555555555444443
Q ss_pred H
Q 028818 112 V 112 (203)
Q Consensus 112 v 112 (203)
+
T Consensus 314 l 314 (457)
T TIGR01000 314 S 314 (457)
T ss_pred H
Confidence 3
No 167
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=83.52 E-value=4.5 Score=39.03 Aligned_cols=57 Identities=18% Similarity=0.214 Sum_probs=42.8
Q ss_pred CchhhHHHHHHHHHH-HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 25 DPFEQLDVARKITSI-AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 25 DP~EQLdlarkIts~-A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
+|.+|+++--.+... .+..++..+..+...++.+|.+......++++++..++.++.
T Consensus 142 ~~~~~~~lLD~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ 199 (563)
T TIGR00634 142 RPDEQRQLLDTFAGANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLE 199 (563)
T ss_pred CHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 888998887776653 577777778888888888887777777777777777766665
No 168
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=83.46 E-value=11 Score=33.41 Aligned_cols=63 Identities=11% Similarity=0.169 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028818 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (203)
Q Consensus 49 E~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (203)
|..+.+|-+.+.-....+.+|+.|+..|+.++. ..+-.++.++-+.+.+...-|.|..|+..+
T Consensus 39 ~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~----~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 39 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDID----SLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444555666666666666665 445555566666666666677777777764
No 169
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=83.40 E-value=34 Score=36.39 Aligned_cols=41 Identities=29% Similarity=0.488 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-----------HHHHHHHHHh
Q 028818 84 LGQAQADKERLSKENEALTNTVRKLQRDVSK-----------LEVFRKTLVQ 124 (203)
Q Consensus 84 L~~a~ee~~kL~~E~~~La~TvKkL~rDvaK-----------LE~FKk~Lmq 124 (203)
+..+.+.+.+..++|.+|..+|.++.|.... ||.||+.|..
T Consensus 454 le~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~ 505 (980)
T KOG0980|consen 454 LESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELAL 505 (980)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4445556667777778888877777765544 5666665543
No 170
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.02 E-value=16 Score=33.37 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028818 86 QAQADKERLSKENEALTNTVRKL 108 (203)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL 108 (203)
...++..+|.++.+.|.++++..
T Consensus 77 ~~~~eik~l~~eI~~~~~~I~~r 99 (265)
T COG3883 77 QSKAEIKKLQKEIAELKENIVER 99 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555444443
No 171
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=82.99 E-value=17 Score=27.66 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 83 KLGQAQADKERLSKENEALTNTVRK 107 (203)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKk 107 (203)
+|-.+..+.++|..-+..++..++.
T Consensus 54 eLD~~~ar~~~Le~~~~Evs~rL~~ 78 (89)
T PF13747_consen 54 ELDQAEARANRLEEANREVSRRLDS 78 (89)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3335555555555555555444443
No 172
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=82.64 E-value=34 Score=30.34 Aligned_cols=80 Identities=19% Similarity=0.319 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-------------------------------HHHHHHHHHHHH
Q 028818 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS--DKLGQ-------------------------------AQADKERLSKEN 98 (203)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~--~rL~~-------------------------------a~ee~~kL~~E~ 98 (203)
+..|+.+|.||++.|-.|+.-+...|..+- ..+++ ..++...-....
T Consensus 59 ~~~L~~~LrEkEErILaLEad~~kWEqkYLEEs~mrq~a~dAaa~aa~~rdttiI~~s~~~s~~~s~r~~eel~~a~~K~ 138 (205)
T PF12240_consen 59 ASNLKELLREKEERILALEADMTKWEQKYLEESAMRQFAMDAAATAAAQRDTTIINHSPSESYNSSLREEEELHMANRKC 138 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCCCCCccccchHHHHHhhhhH
Confidence 455788899999999999988888876654 11111 012222223334
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhcccccC
Q 028818 99 EALTNTVRKLQRDVSKLEVFRKTLVQSLKDDED 131 (203)
Q Consensus 99 ~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d~~ 131 (203)
-.+.+.||.|+..+..=++.=|.|=|..+.+..
T Consensus 139 qemE~RIK~LhaqI~EKDAmIkVLQqrs~~~~~ 171 (205)
T PF12240_consen 139 QEMENRIKALHAQIAEKDAMIKVLQQRSRKDPG 171 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Confidence 567888999999999988888888887776664
No 173
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=82.64 E-value=11 Score=32.08 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=16.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAEL 69 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~L 69 (203)
+...++.+|..++..++.++.+-...|..+
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666555555444
No 174
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=82.56 E-value=22 Score=28.14 Aligned_cols=30 Identities=33% Similarity=0.431 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
+..||.++.+-...|.+|+..+..+...|.
T Consensus 61 L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~ 90 (132)
T PF07926_consen 61 LQQLREELQELQQEINELKAEAESAKAELE 90 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555554444444
No 175
>PRK00846 hypothetical protein; Provisional
Probab=82.55 E-value=9.7 Score=28.80 Aligned_cols=26 Identities=8% Similarity=0.134 Sum_probs=11.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhccc
Q 028818 103 NTVRKLQRDVSKLEVFRKTLVQSLKD 128 (203)
Q Consensus 103 ~TvKkL~rDvaKLE~FKk~LmqSLq~ 128 (203)
.+|.+.++.+++|..--+.|...|.+
T Consensus 34 ~~v~~qq~~I~~L~~ql~~L~~rL~~ 59 (77)
T PRK00846 34 EALADARLTGARNAELIRHLLEDLGK 59 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443444444444
No 176
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=82.49 E-value=17 Score=33.99 Aligned_cols=25 Identities=28% Similarity=0.571 Sum_probs=15.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhc
Q 028818 102 TNTVRKLQRDVSKLEVFRKTLVQSL 126 (203)
Q Consensus 102 a~TvKkL~rDvaKLE~FKk~LmqSL 126 (203)
..+|+.+.+|+.+|..=||+|.+|+
T Consensus 84 E~~V~~it~dIk~LD~AKrNLT~SI 108 (383)
T PF04100_consen 84 EQMVQEITRDIKQLDNAKRNLTQSI 108 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666665543
No 177
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=82.27 E-value=29 Score=29.16 Aligned_cols=99 Identities=19% Similarity=0.235 Sum_probs=49.0
Q ss_pred CCchhhHHHHHHHHHHHH---HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 028818 24 SDPFEQLDVARKITSIAI---STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----DKLGQAQADKERLSK 96 (203)
Q Consensus 24 ~DP~EQLdlarkIts~A~---atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~----~rL~~a~ee~~kL~~ 96 (203)
.||..-|+.+++=...+| ..-|...-+....|..++.+-...+..+++++ +.+|. +.-+.+..+...+..
T Consensus 22 EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A---~~Al~~g~edLAr~al~~k~~~e~ 98 (221)
T PF04012_consen 22 EDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQA---ELALAAGREDLAREALQRKADLEE 98 (221)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHcCCHHHHHHHHHHHHHHHH
Confidence 367766666653222221 22233333333444444444444444444443 33333 444566666666666
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 028818 97 ENEALTNTVRKLQRDVSKLEVFRKTLVQS 125 (203)
Q Consensus 97 E~~~La~TvKkL~rDvaKLE~FKk~LmqS 125 (203)
+...|..++..+...+.+|+..-+.|-..
T Consensus 99 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~k 127 (221)
T PF04012_consen 99 QAERLEQQLDQAEAQVEKLKEQLEELEAK 127 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666665544444433
No 178
>TIGR02559 HrpB7 type III secretion protein HrpB7. This family of genes is found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=82.27 E-value=26 Score=29.92 Aligned_cols=64 Identities=17% Similarity=0.240 Sum_probs=52.9
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Q 028818 37 TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKENEA 100 (203)
Q Consensus 37 ts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~------~rL~~a~ee~~kL~~E~~~ 100 (203)
-.-.+.-++..+|.+...+++-|..|...|+..+..+..++..+. ++|..+.|.......+-+.
T Consensus 80 yr~vl~~~~~~aE~~~aaa~~al~~~~~~laa~~r~iaRn~a~id~c~eR~~~l~ra~ea~~edA~dEEa 149 (158)
T TIGR02559 80 YRDVLEAHLGAAEQAEAAARAALQALAAALAAKKREIARLDAQIDVCRERAERLRRAGEAAREEALEEEA 149 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 334567889999999999999999999999999999999999998 7777777776666555443
No 179
>PRK04863 mukB cell division protein MukB; Provisional
Probab=82.20 E-value=22 Score=39.14 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=10.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLA 60 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~La 60 (203)
.+..|+..|+.++...+..+.
T Consensus 318 ELe~rL~kLEkQaEkA~kyle 338 (1486)
T PRK04863 318 ELNEAESDLEQDYQAASDHLN 338 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555544444
No 180
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=82.08 E-value=14 Score=32.51 Aligned_cols=68 Identities=28% Similarity=0.380 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028818 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (203)
Q Consensus 50 ~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (203)
+||-.||.+|.+-...+...+.++..|..++. .-|.....+......|...|-..+-+|..+++.|..
T Consensus 31 ~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~ 101 (202)
T PF06818_consen 31 SEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELRE 101 (202)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHH
Confidence 45555555555555555555555555555554 333456666666666777777777777777766543
No 181
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=82.01 E-value=30 Score=33.96 Aligned_cols=76 Identities=25% Similarity=0.391 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhhh---------HH
Q 028818 51 EHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTV--------RKLQRD---------VS 113 (203)
Q Consensus 51 E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~Tv--------KkL~rD---------va 113 (203)
++..++..+.+-.....+|+.++.........++....+-..+|..+-.+|++.+ ...|+. =.
T Consensus 68 ~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e 147 (475)
T PRK10361 68 EVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLRE 147 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3333333333333333333333333333333556666666667777777777643 112221 13
Q ss_pred HHHHHHHHHHhhc
Q 028818 114 KLEVFRKTLVQSL 126 (203)
Q Consensus 114 KLE~FKk~LmqSL 126 (203)
+|+.|++.+-.+-
T Consensus 148 ~l~~f~~~v~~~~ 160 (475)
T PRK10361 148 QLDGFRRQVQDSF 160 (475)
T ss_pred HHHHHHHHHHHHH
Confidence 5778888776543
No 182
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=81.61 E-value=21 Score=36.94 Aligned_cols=85 Identities=18% Similarity=0.225 Sum_probs=61.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI---YSS---LS-DKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~L---e~~---L~-~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (203)
+|-++...=-.|++.||.+++||+..+..|++++..- +.. ++ .+|+.+.+....-.++++..+.-.+.+....
T Consensus 228 qye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~lv~~~~~d~e~~~~rd~~lk~a~eslm~ane~kdr~ie~lr~~ln~y 307 (861)
T KOG1899|consen 228 QYETKLKSTKGEMAPLREQRSEKNDEEMRLLRTLVQRLMADGEHKSLRDNTLKNALESLMRANEQKDRFIESLRNYLNNY 307 (861)
T ss_pred HHHhhcccccchhhhHHHHHhhhhhHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHhhchhhhhHHHHHHHHhhhh
Confidence 5555555555679999999999999999988776532 222 22 6888888888888888888887777776666
Q ss_pred HHHHHHHHHHHh
Q 028818 113 SKLEVFRKTLVQ 124 (203)
Q Consensus 113 aKLE~FKk~Lmq 124 (203)
.|.....+-+|.
T Consensus 308 ~k~~~iv~i~qg 319 (861)
T KOG1899|consen 308 DKNAQIVRILQG 319 (861)
T ss_pred hhhhhhhhhhcC
Confidence 666555555544
No 183
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=81.51 E-value=11 Score=30.69 Aligned_cols=42 Identities=31% Similarity=0.441 Sum_probs=25.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLA--EKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~La--EKd~~i~~Lq~r~s~Le~~L~ 81 (203)
.+...++.|++|...|+..+. |-...|.+|+..+..++..|.
T Consensus 90 ~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~ 133 (169)
T PF07106_consen 90 ELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLE 133 (169)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666663 555556666666665555554
No 184
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=81.50 E-value=14 Score=31.16 Aligned_cols=43 Identities=26% Similarity=0.307 Sum_probs=39.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
--+.-|+..+|.+...|++.|..|...|...+..|..++..+.
T Consensus 82 ~~l~~~~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~id 124 (158)
T PF09486_consen 82 DVLEERVRAAEAELAALRQALRAAEDEIAATRRAIARNDARID 124 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 3466799999999999999999999999999999999999887
No 185
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=81.49 E-value=15 Score=30.29 Aligned_cols=29 Identities=17% Similarity=0.223 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 52 HSALRSQLAEKDSRIAELQSQIESIYSSL 80 (203)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L 80 (203)
...||..+......+...+..+..+..+|
T Consensus 21 ~~~l~~~~~~a~~~~~~~~~~l~~~~~qL 49 (135)
T TIGR03495 21 LRNARADLERANRVLKAQQAELASKANQL 49 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34444444444444444444444444444
No 186
>PRK01156 chromosome segregation protein; Provisional
Probab=81.40 E-value=26 Score=35.36 Aligned_cols=13 Identities=31% Similarity=0.335 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 028818 92 ERLSKENEALTNT 104 (203)
Q Consensus 92 ~kL~~E~~~La~T 104 (203)
..|..+...|..+
T Consensus 698 ~~l~~~i~~l~~~ 710 (895)
T PRK01156 698 ARLESTIEILRTR 710 (895)
T ss_pred HHHHHHHHHHHhh
Confidence 3333333333333
No 187
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=81.39 E-value=7.7 Score=41.35 Aligned_cols=31 Identities=26% Similarity=0.533 Sum_probs=17.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIE 74 (203)
Q Consensus 44 RVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s 74 (203)
-++.|++-..+|..++.+-+..|.+|+++|.
T Consensus 411 E~~eL~r~kE~Lsr~~d~aEs~iadlkEQVD 441 (1243)
T KOG0971|consen 411 ELEELRRQKERLSRELDQAESTIADLKEQVD 441 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666666666666666553
No 188
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=81.39 E-value=3.8 Score=38.07 Aligned_cols=33 Identities=18% Similarity=0.423 Sum_probs=0.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQI 73 (203)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~ 73 (203)
+..++..|..|+..++....+.-..|..+..+.
T Consensus 103 l~~~~~elkkEie~IKk~q~e~~~~i~~~~~~~ 135 (370)
T PF02994_consen 103 LKKRIKELKKEIENIKKNQSEMKLEIENLKKKL 135 (370)
T ss_dssp ---------------H-----------------
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHH
Confidence 456667777888888866655544444444333
No 189
>PRK00295 hypothetical protein; Provisional
Probab=81.30 E-value=15 Score=26.68 Aligned_cols=15 Identities=20% Similarity=0.271 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 028818 66 IAELQSQIESIYSSL 80 (203)
Q Consensus 66 i~~Lq~r~s~Le~~L 80 (203)
|.+|+.|++-.|..+
T Consensus 7 i~~LE~kla~qE~ti 21 (68)
T PRK00295 7 VTELESRQAFQDDTI 21 (68)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445554444444333
No 190
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=81.19 E-value=46 Score=31.16 Aligned_cols=39 Identities=18% Similarity=0.287 Sum_probs=26.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~ 78 (203)
.+.+|...+++++..+.+++...+..+..++.....++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 200 (457)
T TIGR01000 162 KSQTQNEAAEKTKAQLDQQISKTDQKLQDYQALKNAISN 200 (457)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666777777777777777777777776666654444
No 191
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=81.13 E-value=45 Score=30.90 Aligned_cols=74 Identities=18% Similarity=0.255 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHH----HHHHHHHHHHHHHHHHHHHHHHHh
Q 028818 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLS--------------DKLG----QAQADKERLSKENEALTNTVRKLQ 109 (203)
Q Consensus 48 LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~--------------~rL~----~a~ee~~kL~~E~~~La~TvKkL~ 109 (203)
|-+.+++++..|.+-.+.|.+|++++..|..++. ..+. ...+-..+|.+=.+.|+..-.+|+
T Consensus 72 l~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~ 151 (301)
T PF06120_consen 72 LRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATRELAVAQERLE 151 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666666666665552 1111 111223333333344555556666
Q ss_pred hhHHHHHHHHHH
Q 028818 110 RDVSKLEVFRKT 121 (203)
Q Consensus 110 rDvaKLE~FKk~ 121 (203)
+-++|+...-++
T Consensus 152 q~~~k~~~~q~~ 163 (301)
T PF06120_consen 152 QMQSKASETQAT 163 (301)
T ss_pred HHHHHHHHHHHH
Confidence 666665554443
No 192
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=81.09 E-value=8.8 Score=33.97 Aligned_cols=61 Identities=20% Similarity=0.322 Sum_probs=25.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEA 100 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~ 100 (203)
+...||..||..+..-.+.+.|-...|.+||..|..|-..+. -.|.+..+++..|-.+-|.
T Consensus 37 ~~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 37 SVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666655544333333444444444444433333333 2222444444444444433
No 193
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=81.08 E-value=20 Score=26.54 Aligned_cols=13 Identities=38% Similarity=0.534 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 028818 96 KENEALTNTVRKL 108 (203)
Q Consensus 96 ~E~~~La~TvKkL 108 (203)
.+|..|..-..+|
T Consensus 39 ~e~~~L~~en~~L 51 (72)
T PF06005_consen 39 EENEELKEENEQL 51 (72)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 194
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=81.05 E-value=50 Score=32.11 Aligned_cols=15 Identities=40% Similarity=0.667 Sum_probs=9.6
Q ss_pred HHHHHHHHHhhcccc
Q 028818 115 LEVFRKTLVQSLKDD 129 (203)
Q Consensus 115 LE~FKk~LmqSLq~d 129 (203)
++.|+++|-+++...
T Consensus 141 ~e~f~e~l~~~~~~s 155 (448)
T COG1322 141 LEKFREQLEQRIHES 155 (448)
T ss_pred HHHHHHHHHHHHHHH
Confidence 677777776655443
No 195
>PRK00106 hypothetical protein; Provisional
Probab=81.05 E-value=58 Score=32.36 Aligned_cols=12 Identities=8% Similarity=0.285 Sum_probs=6.8
Q ss_pred HHHHHHhhcccc
Q 028818 118 FRKTLVQSLKDD 129 (203)
Q Consensus 118 FKk~LmqSLq~d 129 (203)
.|..||..+.++
T Consensus 170 ak~~l~~~~~~~ 181 (535)
T PRK00106 170 AREIILAETENK 181 (535)
T ss_pred HHHHHHHHHHHH
Confidence 455666655554
No 196
>PRK01156 chromosome segregation protein; Provisional
Probab=81.00 E-value=34 Score=34.53 Aligned_cols=18 Identities=17% Similarity=0.508 Sum_probs=7.6
Q ss_pred HHHhhhHHHHHHHHHHHH
Q 028818 106 RKLQRDVSKLEVFRKTLV 123 (203)
Q Consensus 106 KkL~rDvaKLE~FKk~Lm 123 (203)
+++..-+..|+.|++.|.
T Consensus 729 ~~~~~~~~~l~~~r~~l~ 746 (895)
T PRK01156 729 KKIKKAIGDLKRLREAFD 746 (895)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 333334444444444433
No 197
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=80.96 E-value=35 Score=30.04 Aligned_cols=39 Identities=26% Similarity=0.181 Sum_probs=26.4
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 43 tRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
..|..||.|+..|+.....+...+..|+...+.+...+.
T Consensus 68 ~~le~Le~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~~ 106 (256)
T PF14932_consen 68 EDLEALEEELEALQEYKELYEQLRNKLQQLDSSLSQELS 106 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888877777777777777755555544443
No 198
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=80.85 E-value=25 Score=32.45 Aligned_cols=81 Identities=21% Similarity=0.297 Sum_probs=51.8
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhHHH
Q 028818 42 STRVSDLESEHSALRSQLAEKDSRI---AELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL----QRDVSK 114 (203)
Q Consensus 42 atRVs~LE~E~~~LR~~LaEKd~~i---~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL----~rDvaK 114 (203)
..|+.-|--|-.-+|.+|-.+-+.- .--..|.+.+|.++. ...+++.+|+.||+.|-..-+.| +.-+..
T Consensus 58 r~RL~HLS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~----dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~ 133 (292)
T KOG4005|consen 58 RRRLDHLSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIK----DLTEENEILQNENDSLRAINESLLAKNHELDSE 133 (292)
T ss_pred HHhhcccCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4555666556666666664321110 112345566666554 88889999999999998776665 445677
Q ss_pred HHHHHHHHHhhc
Q 028818 115 LEVFRKTLVQSL 126 (203)
Q Consensus 115 LE~FKk~LmqSL 126 (203)
||-++..||.+=
T Consensus 134 le~~~~~l~~~~ 145 (292)
T KOG4005|consen 134 LELLRQELAELK 145 (292)
T ss_pred HHHHHHHHHhhH
Confidence 888888888753
No 199
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=80.75 E-value=19 Score=39.25 Aligned_cols=81 Identities=22% Similarity=0.259 Sum_probs=46.3
Q ss_pred hCCCCchhhHHHHHHHHH-----HHHHHhhhhhHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Q 028818 21 VLPSDPFEQLDVARKITS-----IAISTRVSDLESEHSALRSQ--------------LAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 21 vLP~DP~EQLdlarkIts-----~A~atRVs~LE~E~~~LR~~--------------LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
|.+-+|.+==.+.+..-- +++..++..+|..++.||.. +..=...|+.|+.++..+|.++.
T Consensus 772 ~t~~s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~ 851 (1293)
T KOG0996|consen 772 VTGVSKESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVL 851 (1293)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556666554344333322 24444444444444444443 33334466777777778887765
Q ss_pred ------HHHHHHHHHHHHHHHHHHHH
Q 028818 82 ------DKLGQAQADKERLSKENEAL 101 (203)
Q Consensus 82 ------~rL~~a~ee~~kL~~E~~~L 101 (203)
.+|+...+....|.+|.+.|
T Consensus 852 k~~~d~~~l~~~~~~ie~l~kE~e~~ 877 (1293)
T KOG0996|consen 852 KKVVDKKRLKELEEQIEELKKEVEEL 877 (1293)
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 66676666677777777777
No 200
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=80.64 E-value=15 Score=29.66 Aligned_cols=44 Identities=14% Similarity=0.234 Sum_probs=24.1
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
.+.+..|+..|+.++...+-.-.+=...-.+|+..+.+|..+--
T Consensus 11 ~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~ 54 (107)
T PF09304_consen 11 QNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNA 54 (107)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHH
Confidence 45677788888888877765544333333335555555554443
No 201
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=80.60 E-value=11 Score=26.18 Aligned_cols=35 Identities=31% Similarity=0.485 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 028818 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (203)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk 120 (203)
....++++|.+|++.|...++.|..|-+.+|.+=|
T Consensus 28 ~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 28 ELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 44455566677777777777777667777776655
No 202
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=80.54 E-value=31 Score=33.62 Aligned_cols=49 Identities=22% Similarity=0.424 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHhhhHHHHHHHHHHHHhhccccc
Q 028818 82 DKLGQAQADKERLSKENEALTNT----------VRKLQRDVSKLEVFRKTLVQSLKDDE 130 (203)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~T----------vKkL~rDvaKLE~FKk~LmqSLq~d~ 130 (203)
..|.++.+.+..|..|-+.|... ++.+..++..|+.=-+.+...+....
T Consensus 317 ~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~ 375 (569)
T PRK04778 317 DFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQE 375 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 56678888889999999999888 88999888888877776666655443
No 203
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=80.48 E-value=41 Score=29.84 Aligned_cols=42 Identities=21% Similarity=0.380 Sum_probs=23.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
.+..+...+.+++..++.++..-...+..++.++..++.++.
T Consensus 134 ~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~ 175 (423)
T TIGR01843 134 LFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLE 175 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555554
No 204
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=80.40 E-value=23 Score=26.92 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 47 ~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
.||..+.+|-...+.-|+.+.++.+....++.++.
T Consensus 28 ~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k 62 (96)
T PF08647_consen 28 ILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMK 62 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34555555555555555555555555555555554
No 205
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=80.30 E-value=27 Score=31.85 Aligned_cols=66 Identities=15% Similarity=0.307 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 028818 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (203)
Q Consensus 49 E~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (203)
|-+.+..|.+..-+.-.+.++++.+...-.+++..+....+....|..+..+|...++|-..++.+
T Consensus 143 E~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER 208 (267)
T PF10234_consen 143 EVELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELER 208 (267)
T ss_pred hHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666677766677777777776666666666777788888999999999999988887776654
No 206
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=80.29 E-value=44 Score=31.16 Aligned_cols=85 Identities=18% Similarity=0.322 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHH---HHHHHHHHHHHHHHH
Q 028818 31 DVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI-----------YSSLS---DKLGQAQADKERLSK 96 (203)
Q Consensus 31 dlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~L-----------e~~L~---~rL~~a~ee~~kL~~ 96 (203)
.+-..|...++..|+..||.|-..||.....=......++++-..| -..+. .=|....+++...++
T Consensus 155 ~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQE 234 (306)
T PF04849_consen 155 SSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQE 234 (306)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 3344566678999999999999999987664332222333222211 11111 223355566666666
Q ss_pred HHHHHHHHHHHHhhhHHHH
Q 028818 97 ENEALTNTVRKLQRDVSKL 115 (203)
Q Consensus 97 E~~~La~TvKkL~rDvaKL 115 (203)
|..+|..+|-.|++.+..+
T Consensus 235 EIt~LlsqivdlQ~r~k~~ 253 (306)
T PF04849_consen 235 EITSLLSQIVDLQQRCKQL 253 (306)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666666555544
No 207
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=80.12 E-value=51 Score=35.58 Aligned_cols=85 Identities=24% Similarity=0.335 Sum_probs=52.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH---HHHHHH-HHHHHHHHHHHHHHHHHHHhhhH
Q 028818 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------DK---LGQAQA-DKERLSKENEALTNTVRKLQRDV 112 (203)
Q Consensus 44 RVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~-------~r---L~~a~e-e~~kL~~E~~~La~TvKkL~rDv 112 (203)
.|..=|.||..||..+-=|.+...+++=|..-+|..|. .+ +.+..+ -...|.+--..+..|+..|++|+
T Consensus 956 tle~re~eikeLkk~aKmkqeelSe~qvRldmaEkkLss~~k~~~h~v~~~~ek~ee~~a~lr~Ke~efeetmdaLq~di 1035 (1243)
T KOG0971|consen 956 TLEDRETEIKELKKSAKMKQEELSEAQVRLDLAEKKLSSAAKDADHRVEKVQEKLEETQALLRKKEKEFEETMDALQADI 1035 (1243)
T ss_pred hHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555554 22 222222 23445555567889999999999
Q ss_pred HHHHHHHHHHHhhccc
Q 028818 113 SKLEVFRKTLVQSLKD 128 (203)
Q Consensus 113 aKLE~FKk~LmqSLq~ 128 (203)
..||.=|-.|=+.|+.
T Consensus 1036 ~~lEsek~elKqrl~~ 1051 (1243)
T KOG0971|consen 1036 DQLESEKAELKQRLNS 1051 (1243)
T ss_pred HHHHhhHHHHHHHhhh
Confidence 9999999999888865
No 208
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=80.09 E-value=34 Score=31.43 Aligned_cols=64 Identities=22% Similarity=0.442 Sum_probs=44.9
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028818 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (203)
Q Consensus 42 atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (203)
..++...+.|...+...|.++...+.++++|+. +..+||..+..+-.+|.+.-..+...|++..
T Consensus 199 ~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~----e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~ 262 (269)
T PF05278_consen 199 DRKLELKKEELEELEEELKQKEKEVKEIKERIT----EMKGRLGELEMESTRLSKTIKSIKSKVEKFH 262 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555566667777777777777777777774 3346677888888888887777777777764
No 209
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=79.89 E-value=9.5 Score=34.11 Aligned_cols=77 Identities=25% Similarity=0.267 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 028818 52 HSALRSQLAEKDSRIAELQSQIESIYS-SLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (203)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s~Le~-~L~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq 127 (203)
...++.-...|+....+.++|-+..=. +.. -+..+...+...|.+||+.|...|..|.+++++|..++.+.++-..
T Consensus 181 ~~~~~~~~~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~~~~~ 260 (269)
T KOG3119|consen 181 KSKLSSPVEKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQLPKPGG 260 (269)
T ss_pred hccCCCchhcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 344444445566666666655442211 111 3344556677889999999999999999999999999888776554
Q ss_pred c
Q 028818 128 D 128 (203)
Q Consensus 128 ~ 128 (203)
+
T Consensus 261 ~ 261 (269)
T KOG3119|consen 261 A 261 (269)
T ss_pred C
Confidence 3
No 210
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=79.73 E-value=11 Score=26.22 Aligned_cols=30 Identities=27% Similarity=0.378 Sum_probs=13.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 45 VSDLESEHSALRSQLAEKDSRIAELQSQIE 74 (203)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s 74 (203)
...+..++..|+.++++-...+.+|+.++.
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~ 48 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIE 48 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443
No 211
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=79.56 E-value=25 Score=26.82 Aligned_cols=62 Identities=21% Similarity=0.302 Sum_probs=30.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (203)
+.+.|..+|...+..|+..+.+......+|+.. .+....+.+.-..|..+|..|..=..+||
T Consensus 32 ~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~---------------l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE 93 (99)
T PF10046_consen 32 ATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPY---------------LQQIDQIEEQVTELEQTVYELDEYSKELE 93 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666655554444443333322 22333344444455555555555555555
No 212
>PRK12705 hypothetical protein; Provisional
Probab=79.50 E-value=33 Score=33.78 Aligned_cols=13 Identities=31% Similarity=0.350 Sum_probs=9.2
Q ss_pred HHHHHHhhccccc
Q 028818 118 FRKTLVQSLKDDE 130 (203)
Q Consensus 118 FKk~LmqSLq~d~ 130 (203)
.|+.||..+.++-
T Consensus 143 ak~~l~~~~~~~~ 155 (508)
T PRK12705 143 ARKLLLKLLDAEL 155 (508)
T ss_pred HHHHHHHHHHHHH
Confidence 5788888777654
No 213
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=79.45 E-value=0.59 Score=46.29 Aligned_cols=20 Identities=25% Similarity=0.464 Sum_probs=0.0
Q ss_pred HHhhhhhHHHHHHHHHHHHH
Q 028818 42 STRVSDLESEHSALRSQLAE 61 (203)
Q Consensus 42 atRVs~LE~E~~~LR~~LaE 61 (203)
+.|+.+||.++.+.|.+|.+
T Consensus 307 a~r~~klE~~ve~YKkKLed 326 (713)
T PF05622_consen 307 ADRADKLENEVEKYKKKLED 326 (713)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777666654
No 214
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=79.43 E-value=25 Score=30.88 Aligned_cols=42 Identities=12% Similarity=0.278 Sum_probs=30.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIA-------ELQSQIESIYSSLS 81 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~-------~Lq~r~s~Le~~L~ 81 (203)
.++.+|-+||..+..|-.++.++-+... .+..+|+.++..+.
T Consensus 76 rvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~ 124 (189)
T TIGR02132 76 NVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIK 124 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHH
Confidence 3788889999999998888888777666 44555555555554
No 215
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=79.33 E-value=12 Score=33.93 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=30.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
-.+.|.+++.|+..+..+|+.|+.||+.+-..|..|.
T Consensus 69 q~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLt 105 (272)
T KOG4552|consen 69 QQKREQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILT 105 (272)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3556777888888888888888888888888888777
No 216
>PRK04863 mukB cell division protein MukB; Provisional
Probab=79.29 E-value=34 Score=37.83 Aligned_cols=75 Identities=13% Similarity=0.201 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 028818 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (203)
Q Consensus 47 ~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~ 121 (203)
.++.++..|..++.+-...+.++++++..++..+. .++.....+..++..+.+.+...+..++..++.|+.-|..
T Consensus 352 ~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~ 429 (1486)
T PRK04863 352 RYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQL 429 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444333334444333333333333 2233444455555556666666666666666666665543
No 217
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=79.24 E-value=11 Score=29.33 Aligned_cols=43 Identities=16% Similarity=0.222 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 028818 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (203)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~ 128 (203)
...+++.+|+.+|+.|...|+.|+.+-+-+|..=|.=+.=..+
T Consensus 38 ~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~Lg~vk~ 80 (105)
T PRK00888 38 AQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNELGMVKP 80 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHcCCCCC
Confidence 6666777888888888888888887766677666655544433
No 218
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=79.07 E-value=18 Score=32.62 Aligned_cols=80 Identities=24% Similarity=0.328 Sum_probs=43.6
Q ss_pred HhhhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhh
Q 028818 43 TRVSDLESEHSALRSQLA-------EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLS----KENEALTNTVRKLQRD 111 (203)
Q Consensus 43 tRVs~LE~E~~~LR~~La-------EKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~----~E~~~La~TvKkL~rD 111 (203)
+-++.|+.+...++.+++ +..-.+..++.++..|+.++. ++..++. ............|.||
T Consensus 214 ~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~-------~e~~~i~~~~~~~l~~~~~~~~~L~re 286 (362)
T TIGR01010 214 SLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQID-------EQRNQLSGGLGDSLNEQTADYQRLVLQ 286 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHH-------HHHHHhhcCCCccHHHHHHHHHHHHHH
Confidence 334444444444444444 334456677777777777775 1111111 1234445566778888
Q ss_pred HHHHHHHHHHHHhhcccc
Q 028818 112 VSKLEVFRKTLVQSLKDD 129 (203)
Q Consensus 112 vaKLE~FKk~LmqSLq~d 129 (203)
+.--+..=..+++.+++-
T Consensus 287 ~~~a~~~y~~~l~r~~~a 304 (362)
T TIGR01010 287 NELAQQQLKAALTSLQQT 304 (362)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 877666666666655543
No 219
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=79.05 E-value=13 Score=39.27 Aligned_cols=91 Identities=21% Similarity=0.280 Sum_probs=72.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRI----AELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i----~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (203)
-+--+++.||.|..+||..|..-.... .+=..++..||.++ +.|+..+..+.+|.+-+..-..++++|...+-.+
T Consensus 513 ~le~e~~~le~E~~~l~~el~~~~~~~~kl~eer~qklk~le~q~-s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei~~~ 591 (913)
T KOG0244|consen 513 TLEAEKSPLESERSRLRNELNVFNRLAAKLGEERVQKLKSLETQI-SLLKKKLSSQRKLIKPKPKSEGIRAKLLQEIHIA 591 (913)
T ss_pred hHHHHhcccccccHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHH-HHHHHhhHHHHHHhccchhhHHHHHHHHHHHHHH
Confidence 445566778888888888887554433 23345666666666 5888888899999999999999999999999999
Q ss_pred HHHHHHHHhhcccccC
Q 028818 116 EVFRKTLVQSLKDDED 131 (203)
Q Consensus 116 E~FKk~LmqSLq~d~~ 131 (203)
|.-|.+|++-..+|.+
T Consensus 592 k~~kv~l~~~~~~d~e 607 (913)
T KOG0244|consen 592 KGQKVQLLRVMKEDAE 607 (913)
T ss_pred HHHHHHHHHHHhhhHH
Confidence 9999999998888876
No 220
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=79.04 E-value=3.2 Score=30.01 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=24.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIA 67 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~ 67 (203)
-+..|+.-||+||.+++..+..|..+-.
T Consensus 25 EL~~RIa~L~aEI~R~~~~~~~K~a~r~ 52 (59)
T PF06698_consen 25 ELEERIALLEAEIARLEAAIAKKSASRA 52 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999999887654
No 221
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=78.90 E-value=46 Score=29.45 Aligned_cols=54 Identities=17% Similarity=0.294 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Q 028818 28 EQLDVARKITSIAISTRVSDLESEHSALRSQLAEKD-----SRIAELQSQIESIYSSLS 81 (203)
Q Consensus 28 EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd-----~~i~~Lq~r~s~Le~~L~ 81 (203)
++|+-...-...++..++...+..+..+...+.... +.+...+.++..+...|.
T Consensus 150 ~~l~~~~~~l~~~~~~~l~~~~~~L~~l~~~l~~~~~~~p~~~l~~~~~~Ld~l~~rL~ 208 (319)
T PF02601_consen 150 QRLDELRQRLNRAMRNRLQRKRQRLNQLAKRLQLQSRRLPERKLEQQQQRLDELKQRLK 208 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555777788877777777777777544 456666666666666665
No 222
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=78.87 E-value=35 Score=28.80 Aligned_cols=79 Identities=19% Similarity=0.339 Sum_probs=55.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRI-----AELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i-----~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (203)
-+...|-+||......|..|++=.+.. .++++=|..+.. +|-+|....++-..|...+|.|...++.|..-|.+
T Consensus 45 ~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~-lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tier 123 (159)
T PF05384_consen 45 EVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHE-LQVRLAMLREREKQLRERRDELERRLRNLEETIER 123 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678888888888888887654443 223332222211 22456688888899999999999999999999988
Q ss_pred HHHHH
Q 028818 115 LEVFR 119 (203)
Q Consensus 115 LE~FK 119 (203)
-|.+=
T Consensus 124 AE~l~ 128 (159)
T PF05384_consen 124 AENLV 128 (159)
T ss_pred HHHHH
Confidence 87653
No 223
>smart00338 BRLZ basic region leucin zipper.
Probab=78.71 E-value=19 Score=25.00 Aligned_cols=25 Identities=40% Similarity=0.715 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHH
Q 028818 92 ERLSKENEALTNTVRKLQRDVSKLE 116 (203)
Q Consensus 92 ~kL~~E~~~La~TvKkL~rDvaKLE 116 (203)
..|..+|..|...|..|..++..|.
T Consensus 36 ~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 36 EQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555544443
No 224
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=78.69 E-value=10 Score=41.07 Aligned_cols=33 Identities=21% Similarity=0.422 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 028818 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (203)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (203)
+++..+.++..+|..+.+.+...+++-.|.++|
T Consensus 907 ~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k 939 (1293)
T KOG0996|consen 907 DKVEKINEQLDKLEADIAKLTVAIKTSDRNIAK 939 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHH
Confidence 666666677777766666666666554444444
No 225
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=78.42 E-value=19 Score=28.70 Aligned_cols=50 Identities=26% Similarity=0.363 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 29 QLDVARKITSIAISTRVSDLESEHSALRS------QLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 29 QLdlarkIts~A~atRVs~LE~E~~~LR~------~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
||+.|+ ...=..||.+||.-...++. -+.+....|.+.+.+|...+.+|.
T Consensus 32 qI~~Ak---~~gN~~rv~GLe~AL~~v~~~Ctd~~l~~e~q~ki~~~~~kV~ere~eL~ 87 (115)
T PF06476_consen 32 QIEYAK---AHGNQHRVAGLEKALEEVKAHCTDEGLKAERQQKIAEKQQKVAEREAELK 87 (115)
T ss_pred HHHHHH---HcCCHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 555554 22335789999999888875 355888888888889988888887
No 226
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=78.37 E-value=20 Score=28.69 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028818 86 QAQADKERLSKENEALTNTVRKL 108 (203)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL 108 (203)
...++|..|.-||+.|-..+.++
T Consensus 33 el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 33 ELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 77888888988988887766654
No 227
>PRK04325 hypothetical protein; Provisional
Probab=78.36 E-value=13 Score=27.41 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=12.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 028818 101 LTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (203)
Q Consensus 101 La~TvKkL~rDvaKLE~FKk~LmqSLq~ 128 (203)
|...|.+.++++++|+.--+.|...|.+
T Consensus 28 LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 28 LNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433
No 228
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=78.23 E-value=19 Score=38.68 Aligned_cols=39 Identities=21% Similarity=0.231 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 028818 84 LGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (203)
Q Consensus 84 L~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (203)
+......+.+...|+....-.+++|..+|.+++.=++..
T Consensus 887 i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~ 925 (1174)
T KOG0933|consen 887 ISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANA 925 (1174)
T ss_pred HhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHH
Confidence 444556667888889999999999999999998776554
No 229
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=78.21 E-value=27 Score=34.05 Aligned_cols=10 Identities=20% Similarity=0.355 Sum_probs=4.6
Q ss_pred HHHHHHHHHh
Q 028818 115 LEVFRKTLVQ 124 (203)
Q Consensus 115 LE~FKk~Lmq 124 (203)
|..+||.+..
T Consensus 427 L~~ikr~l~k 436 (569)
T PRK04778 427 LHEIKRYLEK 436 (569)
T ss_pred HHHHHHHHHH
Confidence 3345554444
No 230
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=78.21 E-value=32 Score=36.96 Aligned_cols=69 Identities=22% Similarity=0.368 Sum_probs=31.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----DKLGQAQADKERLSKENEALTNTVRKL 108 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~----~rL~~a~ee~~kL~~E~~~La~TvKkL 108 (203)
++..+|..++.+++.--..+.++...+..|+++++.++.++. ..+.+..++...|.+|...|...+..|
T Consensus 348 ~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L 420 (1074)
T KOG0250|consen 348 DLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSL 420 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555444444444444444444444444444441 333344444444444444444444333
No 231
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=78.18 E-value=27 Score=29.00 Aligned_cols=68 Identities=21% Similarity=0.346 Sum_probs=36.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 028818 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (203)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk 120 (203)
+--|+..+-.+...+++++.+.........+..... ..++..++.+|-..|...+++...|+. ++|+
T Consensus 116 ~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~----------~~~~~~~~~~ei~~lk~el~~~~~~~~---~Lkk 182 (192)
T PF05529_consen 116 VIRRVHSLIKELIKLEEKLEALKKQAESASEAAEKL----------LKEENKKLSEEIEKLKKELEKKEKEIE---ALKK 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh----------hhhhhhhhHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 346777777777776666654444333332222111 334556666666666666666555543 4555
Q ss_pred H
Q 028818 121 T 121 (203)
Q Consensus 121 ~ 121 (203)
+
T Consensus 183 Q 183 (192)
T PF05529_consen 183 Q 183 (192)
T ss_pred H
Confidence 4
No 232
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.14 E-value=17 Score=37.07 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=30.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~L 76 (203)
-|-.||-.||.|...+|+.|+++..+..-|...++.+
T Consensus 104 ~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~ 140 (772)
T KOG0999|consen 104 YYLQKILELENELKQLRQELTNVQEENERLEKVHSDL 140 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999999988887777666554
No 233
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=78.03 E-value=23 Score=39.94 Aligned_cols=73 Identities=23% Similarity=0.409 Sum_probs=46.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (203)
-+-+|+-.|+.++..||.++.+|..++++|.... +..|. .++.....+..++..+.+++...+-+|.-.|+-|
T Consensus 802 ~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~---~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL 877 (1822)
T KOG4674|consen 802 KCESRIKELERELQKLKKKLQEKSSDLRELTNSL---EKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSEL 877 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557888999999999999999999999987543 33333 3444444444444444444444444444444333
No 234
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=77.99 E-value=16 Score=34.19 Aligned_cols=75 Identities=20% Similarity=0.261 Sum_probs=48.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-DKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~-~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (203)
-..-+..+|..|+..||+++.|=.--|.-|+++++....... .-.+....+..+|..+-..+-.+..-|.+|+.-
T Consensus 76 ~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs 151 (319)
T PF09789_consen 76 ESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQS 151 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778899999999999999999999999999888766554 111111144444444444444444444444443
No 235
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=77.95 E-value=30 Score=29.51 Aligned_cols=33 Identities=33% Similarity=0.458 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhHHHH
Q 028818 83 KLGQAQADKERLSKENEAL-------TNTVRKLQRDVSKL 115 (203)
Q Consensus 83 rL~~a~ee~~kL~~E~~~L-------a~TvKkL~rDvaKL 115 (203)
||.+-.+.+..|..-|.-| -.+-..|..|+.||
T Consensus 68 rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~kl 107 (182)
T PF15035_consen 68 RLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKL 107 (182)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555 34444555555554
No 236
>PRK00736 hypothetical protein; Provisional
Probab=77.95 E-value=19 Score=26.08 Aligned_cols=15 Identities=13% Similarity=0.346 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q 028818 66 IAELQSQIESIYSSL 80 (203)
Q Consensus 66 i~~Lq~r~s~Le~~L 80 (203)
|.+|+.|++-.|..+
T Consensus 7 i~~LE~klafqe~ti 21 (68)
T PRK00736 7 LTELEIRVAEQEKTI 21 (68)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555444443
No 237
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=77.85 E-value=23 Score=31.50 Aligned_cols=56 Identities=18% Similarity=0.370 Sum_probs=31.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTV 105 (203)
Q Consensus 46 s~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~Tv 105 (203)
..+.++...|+.++.+|+......++++..|.-+.. ...++-.+|.+|++.|.++|
T Consensus 154 ~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e----~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 154 DKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSE----GLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcccHHHHHHHHHHHHHHHH
Confidence 444455555555666665555555555555555554 45555555555555555544
No 238
>smart00338 BRLZ basic region leucin zipper.
Probab=77.77 E-value=13 Score=25.91 Aligned_cols=39 Identities=28% Similarity=0.440 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 61 EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTN 103 (203)
Q Consensus 61 EKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~ 103 (203)
-|..++.+|+.++..|+.+-. ....+...|..|+..|.+
T Consensus 23 rKk~~~~~Le~~~~~L~~en~----~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 23 RKKAEIEELERKVEQLEAENE----RLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 456778888888777776655 444444445555544443
No 239
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=77.65 E-value=36 Score=30.28 Aligned_cols=72 Identities=19% Similarity=0.285 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 028818 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (203)
Q Consensus 47 ~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~ 121 (203)
.++.-+-.+-++|.+++..+...+.+...++.+...--....+....+..+..++...++.|. .||+.-|+.
T Consensus 187 ~~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~---ekme~e~~~ 258 (297)
T PF02841_consen 187 SMENSILQADQQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLK---EKMEEEREQ 258 (297)
T ss_dssp HHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 444555566667777777777777777766666651111222333445555555555555554 344444443
No 240
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=77.61 E-value=0.73 Score=47.12 Aligned_cols=89 Identities=26% Similarity=0.403 Sum_probs=0.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-----------DKLGQAQADKERLSKENEALTNTVRK 107 (203)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~-----------~rL~~a~ee~~kL~~E~~~La~TvKk 107 (203)
.++..++..||.|+..||.++.+-..-..+|+.+++.+..++. .+.....+-..+|..+-..+...+..
T Consensus 260 ~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~ 339 (859)
T PF01576_consen 260 QALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEE 339 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3888999999999999999999999999999999999998888 23334555667888888889999999
Q ss_pred HhhhHHHHHHHHHHHHhhcc
Q 028818 108 LQRDVSKLEVFRKTLVQSLK 127 (203)
Q Consensus 108 L~rDvaKLE~FKk~LmqSLq 127 (203)
++..+++|+.-|+.|.+=+.
T Consensus 340 ~~~~~~~LeK~k~rL~~Ele 359 (859)
T PF01576_consen 340 ANAKVSSLEKTKKRLQGELE 359 (859)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988766443
No 241
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=77.45 E-value=63 Score=30.20 Aligned_cols=53 Identities=13% Similarity=0.231 Sum_probs=33.4
Q ss_pred hCCCCchhhHHHHHHHHHHHH-----------HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 21 VLPSDPFEQLDVARKITSIAI-----------STRVSDLESEHSALRSQLAEKDSRIAELQSQI 73 (203)
Q Consensus 21 vLP~DP~EQLdlarkIts~A~-----------atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~ 73 (203)
+--.||..=-+++-.|...=+ ..-..-|+.++..++++|.+.+..+.+.+.+.
T Consensus 128 ~~~~dP~~Aa~i~n~l~~~yi~~~~~~~~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~ 191 (498)
T TIGR03007 128 YEDKDPELAKDVVQTLLTIFVEETLGSKRQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQEN 191 (498)
T ss_pred eeCCCHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 445677666666666544311 12344567788888888888888877776543
No 242
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=77.41 E-value=58 Score=29.78 Aligned_cols=79 Identities=23% Similarity=0.378 Sum_probs=58.8
Q ss_pred hhhhhHHHHHHHHHHHH---HHHHH------------------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 028818 44 RVSDLESEHSALRSQLA---EKDSR------------------IAELQSQIESIYSSLS---DKLGQAQADKERLSKENE 99 (203)
Q Consensus 44 RVs~LE~E~~~LR~~La---EKd~~------------------i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~ 99 (203)
+|..|-..-..||.+|. +|-.. |..+-+++-.||.+-. .|-..+..-...+..|+.
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~ 282 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQ 282 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 66666667777888776 44332 3444455555665555 666677777788999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHH
Q 028818 100 ALTNTVRKLQRDVSKLEVFRKTL 122 (203)
Q Consensus 100 ~La~TvKkL~rDvaKLE~FKk~L 122 (203)
.+...+.++.+.+.+||++-|+|
T Consensus 283 ~~~~~~~~~~~k~~kLe~LcRaL 305 (309)
T PF09728_consen 283 KLEKELEKLKKKIEKLEKLCRAL 305 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999886
No 243
>PRK12704 phosphodiesterase; Provisional
Probab=77.28 E-value=76 Score=31.09 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 028818 93 RLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (203)
Q Consensus 93 kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq 127 (203)
+|......|...-+.|.+--..++.++....+-|.
T Consensus 111 eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~ 145 (520)
T PRK12704 111 ELEKKEKELEQKQQELEKKEEELEELIEEQLQELE 145 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444333444444444444443
No 244
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=77.26 E-value=3.5 Score=36.43 Aligned_cols=32 Identities=34% Similarity=0.502 Sum_probs=26.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQ 72 (203)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r 72 (203)
...|+..||.-|..|=.+++|||..|.-||.|
T Consensus 134 a~~K~qemE~RIK~LhaqI~EKDAmIkVLQqr 165 (205)
T PF12240_consen 134 ANRKCQEMENRIKALHAQIAEKDAMIKVLQQR 165 (205)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35688888888888888888888888888754
No 245
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=77.03 E-value=9.5 Score=27.39 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=15.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (203)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L 80 (203)
+..||.++.++...+.-=...+.+|.+.+..++..+
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444433344444444444444433
No 246
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=76.85 E-value=49 Score=29.02 Aligned_cols=66 Identities=18% Similarity=0.291 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 028818 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (203)
Q Consensus 48 LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~-------~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (203)
-|.++..|+.+..++...+.++..=+..+|..++ -.-.....+..++..|++.+..-+..+.+.++
T Consensus 21 ~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfs 93 (207)
T PF05010_consen 21 KEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFS 93 (207)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHH
Confidence 3455555666666555555555444444444443 22233344556667777766666655555444
No 247
>PF14282 FlxA: FlxA-like protein
Probab=76.75 E-value=17 Score=28.20 Aligned_cols=59 Identities=27% Similarity=0.424 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 028818 63 DSRIAELQSQIESIYSSLSDKLGQA-QADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (203)
Q Consensus 63 d~~i~~Lq~r~s~Le~~L~~rL~~a-~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (203)
+..|..|++++..|+..|. .|... .-....-......|-..+.-|...++.|..=+..-
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~-~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~ 77 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQ-ELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQ 77 (106)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666664 22221 00112223444556666666666666655544433
No 248
>PRK02793 phi X174 lysis protein; Provisional
Probab=76.68 E-value=15 Score=26.90 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 028818 86 QAQADKERLSKENEALTNTVRKLQRDV 112 (203)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (203)
...+...+.+++.+.|...++.|...+
T Consensus 26 ~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 52 (72)
T PRK02793 26 ELNVTVTAHEMEMAKLRDHLRLLTEKL 52 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555566666666666654433
No 249
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=76.30 E-value=33 Score=37.08 Aligned_cols=77 Identities=19% Similarity=0.295 Sum_probs=39.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028818 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------------DKLGQAQADKERLSKENEALTNTVRKLQRD 111 (203)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~-------------~rL~~a~ee~~kL~~E~~~La~TvKkL~rD 111 (203)
.++|.+....|+.++..++.+...+-+|...|+..+. ..|+..-+..+.|.+.++.|.-.-+.+..=
T Consensus 504 lsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~ 583 (1195)
T KOG4643|consen 504 LSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDLELIHNELKKY 583 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3445555555555555555544444444443333332 344444455555555555555555555555
Q ss_pred HHHHHHHHHH
Q 028818 112 VSKLEVFRKT 121 (203)
Q Consensus 112 vaKLE~FKk~ 121 (203)
+.+|++++++
T Consensus 584 idaL~alrrh 593 (1195)
T KOG4643|consen 584 IDALNALRRH 593 (1195)
T ss_pred HHHHHHHHHH
Confidence 5666666554
No 250
>PF06246 Isy1: Isy1-like splicing family; InterPro: IPR009360 Isy1 protein is important in the optimisation of splicing [].; PDB: 1X4T_A.
Probab=76.27 E-value=14 Score=33.40 Aligned_cols=58 Identities=12% Similarity=0.172 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028818 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS--DKLGQAQADKERLSKENEALTNTVRKLQ 109 (203)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~--~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (203)
+..|++-.-=+-..|.++-.+++.+...-- -+++..++++++|.+|+..-...++.|.
T Consensus 39 v~~l~~ae~WR~~ii~EIs~kv~~Iqd~~L~E~~IRdLNDeINkL~rEK~~WE~rI~~LG 98 (255)
T PF06246_consen 39 VKSLPEAEKWRRQIIKEISRKVTRIQDPSLGEFQIRDLNDEINKLIREKRHWERRIKELG 98 (255)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHH--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334444444455567777777776655433 7889999999999999999999999987
No 251
>PRK10869 recombination and repair protein; Provisional
Probab=76.23 E-value=15 Score=35.86 Aligned_cols=58 Identities=10% Similarity=0.056 Sum_probs=33.2
Q ss_pred CCchhhHHHHHHHHH-HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 24 SDPFEQLDVARKITS-IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 24 ~DP~EQLdlarkIts-~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
-+|..|+++--.+.. ..+...+..+-.+...++.+|.+......+.++++.-|+.++.
T Consensus 137 l~~~~~~~lLD~~~~~~~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~ 195 (553)
T PRK10869 137 LKPEHQKTLLDAYANETSLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLK 195 (553)
T ss_pred cCHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 489999998777665 4455555555555555555555444444444444444444443
No 252
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=76.17 E-value=10 Score=27.20 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028818 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (203)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (203)
++++.....-.+-..+...|...+.+|+.+++|||.
T Consensus 17 a~MK~l~~~aeq~L~~~~~i~~al~~Lk~EIaklE~ 52 (53)
T PF08898_consen 17 AQMKALAAQAEQQLAEAGDIAAALEKLKAEIAKLEA 52 (53)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHhc
Confidence 577777777777788899999999999999999985
No 253
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=75.83 E-value=60 Score=30.75 Aligned_cols=86 Identities=16% Similarity=0.295 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH---H---
Q 028818 31 DVARKITSIAISTRVSDLESEHSALRSQLAEK-----DSRIAELQSQIESIYSSLS--DKLGQAQADKERLSK---E--- 97 (203)
Q Consensus 31 dlarkIts~A~atRVs~LE~E~~~LR~~LaEK-----d~~i~~Lq~r~s~Le~~L~--~rL~~a~ee~~kL~~---E--- 97 (203)
+++.++-..+=...+..++.+...|...+.+- ...+..+-++++.|...+. .++....++...|.+ +
T Consensus 11 ~~~~~~~~~~~~~~l~~~~~~~~~le~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~l~el~~~e~D 90 (364)
T TIGR00020 11 DLTSRLDTVRGSLDPEKKKARLEELEKEMEDPNFWNDQERAQAVIKERSSLEAVLDTLEELKNSLEDLSELLELAVEEDD 90 (364)
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 35566655554555666666666666666532 2334444445555554444 344444444433322 1
Q ss_pred ---HHHHHHHHHHHhhhHHHHH
Q 028818 98 ---NEALTNTVRKLQRDVSKLE 116 (203)
Q Consensus 98 ---~~~La~TvKkL~rDvaKLE 116 (203)
+.-+...++.|.+++.+||
T Consensus 91 ~e~~~~a~~e~~~l~~~l~~le 112 (364)
T TIGR00020 91 EETFNELDAELKALEKKLAELE 112 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 2345567788999999998
No 254
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=75.76 E-value=6.9 Score=36.66 Aligned_cols=77 Identities=34% Similarity=0.435 Sum_probs=13.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSKENEALTNTVRKLQ 109 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~----------~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (203)
.+.++|+.|++++..|-..+++-...+..|...|..++..+. ..+..-......|+..-+.+.-.|-.|.
T Consensus 53 ~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLk 132 (326)
T PF04582_consen 53 SLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLK 132 (326)
T ss_dssp -----------------------------------------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhh
Confidence 345566666666666666666555555555555555555444 4444445555666666666666666666
Q ss_pred hhHHHHH
Q 028818 110 RDVSKLE 116 (203)
Q Consensus 110 rDvaKLE 116 (203)
+||+-+.
T Consensus 133 sdVSt~a 139 (326)
T PF04582_consen 133 SDVSTQA 139 (326)
T ss_dssp HHHHHHH
T ss_pred hhhhhhc
Confidence 6665543
No 255
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=75.73 E-value=26 Score=25.00 Aligned_cols=60 Identities=20% Similarity=0.324 Sum_probs=38.5
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028818 52 HSALRSQLA-EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (203)
Q Consensus 52 ~~~LR~~La-EKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (203)
+..+..+|. ++...-.+||.-|-.=-..+. .+-++..+|..+-..|.+.+..|+..+.+|
T Consensus 24 i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI----~as~~I~~m~~~~~~l~~~l~~l~~~~~~l 84 (87)
T PF08700_consen 24 IRQLENKLRQEIEEKDEELRKLVYENYRDFI----EASDEISSMENDLSELRNLLSELQQSIQSL 84 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333 333344445544444444444 888888889988888999998888887766
No 256
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=75.50 E-value=70 Score=29.80 Aligned_cols=53 Identities=15% Similarity=0.251 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 028818 29 QLDVARKITSIAISTRVSDLESEHSALRSQLA--EKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 29 QLdlarkIts~A~atRVs~LE~E~~~LR~~La--EKd~~i~~Lq~r~s~Le~~L~ 81 (203)
+|+-...=...++..++..-+..+..|+..+. .-...+..++.++..+...|.
T Consensus 268 ~Ld~l~~rL~~a~~~~L~~~~~~L~~L~~rL~~~~P~~~l~~~~q~L~~l~~rL~ 322 (438)
T PRK00286 268 RLQQLQQRLARAMRRRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLDRLQQRLQ 322 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455777777777777777666653 223334444444444444443
No 257
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=75.26 E-value=23 Score=28.53 Aligned_cols=31 Identities=32% Similarity=0.467 Sum_probs=12.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQ 70 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq 70 (203)
.+..|+...+.++..++..|.+=...+.+|+
T Consensus 34 dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~ 64 (141)
T PF13874_consen 34 DLKKRVEAQEEEIAQHRERLKEINDKLEELQ 64 (141)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777777776666666663
No 258
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=75.19 E-value=25 Score=24.44 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028818 61 EKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 61 EKd~~i~~Lq~r~s~Le~~L~ 81 (203)
-|...|.+|+.++..|+.+..
T Consensus 23 RKk~~~~~Le~~~~~L~~en~ 43 (64)
T PF00170_consen 23 RKKQYIEELEEKVEELESENE 43 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHH
Confidence 466677777777776665544
No 259
>PF13864 Enkurin: Calmodulin-binding
Probab=75.18 E-value=7.6 Score=29.45 Aligned_cols=56 Identities=21% Similarity=0.384 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028818 60 AEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (203)
Q Consensus 60 aEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (203)
.|+...+..|+.+...|..+|+ +|-.. -+-.....-+..|...++-|..|+.+|+.
T Consensus 40 eER~~lL~~Lk~~~~el~~ey~-~lp~~-~DT~~~~~rK~~lE~~L~qlE~dI~~lsr 95 (98)
T PF13864_consen 40 EERQELLEGLKKNWDELNKEYQ-KLPFS-IDTLRKKRRKEELEKELKQLEKDIKKLSR 95 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hCCcc-cCCHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4788899999999999999998 44443 22444455566666666666666666654
No 260
>PRK04406 hypothetical protein; Provisional
Probab=75.10 E-value=27 Score=25.97 Aligned_cols=43 Identities=9% Similarity=0.134 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028818 64 SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQR 110 (203)
Q Consensus 64 ~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~r 110 (203)
+.|.+|+.|++-.|..+. ...+...+.+++.+.|...++.|..
T Consensus 11 ~Ri~~LE~~lAfQE~tIe----~LN~~v~~Qq~~I~~L~~ql~~L~~ 53 (75)
T PRK04406 11 ERINDLECQLAFQEQTIE----ELNDALSQQQLLITKMQDQMKYVVG 53 (75)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555554 4444444555555556555555533
No 261
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=74.98 E-value=44 Score=30.51 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=10.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAE 61 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaE 61 (203)
++..-+..+..++..+++++..
T Consensus 166 ~l~~ai~~~~~~~~~~~~~l~~ 187 (267)
T PF10234_consen 166 ALKEAIKAVQQQLQQTQQQLNN 187 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444445555444443
No 262
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=74.79 E-value=76 Score=32.58 Aligned_cols=50 Identities=18% Similarity=0.283 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 31 DVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 31 dlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
+-|+++....- .++..|=.++...|.++.++.+.++.+.+++..+..+|.
T Consensus 505 ~~A~~~~~~~~-~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~ 554 (782)
T PRK00409 505 EEAKKLIGEDK-EKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELE 554 (782)
T ss_pred HHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555544311 144444444444444444444444444444444444333
No 263
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=74.79 E-value=70 Score=29.44 Aligned_cols=25 Identities=16% Similarity=0.409 Sum_probs=21.5
Q ss_pred HHHHhhhHHHHHHHHHHHHhhcccc
Q 028818 105 VRKLQRDVSKLEVFRKTLVQSLKDD 129 (203)
Q Consensus 105 vKkL~rDvaKLE~FKk~LmqSLq~d 129 (203)
++.|.+-+.+++.||+.||..|.+=
T Consensus 156 ~~el~~K~~~~k~~~e~Ll~~LgeF 180 (268)
T PF11802_consen 156 FQELKTKIEKIKEYKEKLLSFLGEF 180 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888999999999999988764
No 264
>PRK04325 hypothetical protein; Provisional
Probab=74.58 E-value=25 Score=25.93 Aligned_cols=41 Identities=22% Similarity=0.215 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028818 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQR 110 (203)
Q Consensus 66 i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~r 110 (203)
|.+|+.|++-.|..+. ...+...+.+++.+.|...++.|..
T Consensus 11 i~~LE~klAfQE~tIe----~LN~vv~~Qq~~I~~L~~ql~~L~~ 51 (74)
T PRK04325 11 ITELEIQLAFQEDLID----GLNATVARQQQTLDLLQAQLRLLYQ 51 (74)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444443332 4444445555555555555555543
No 265
>PF13514 AAA_27: AAA domain
Probab=74.43 E-value=39 Score=35.45 Aligned_cols=61 Identities=18% Similarity=0.336 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 028818 62 KDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (203)
Q Consensus 62 Kd~~i~~Lq~r~s~Le~~L~------~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (203)
+...|..+-+++..++.++. .......++...+..+...|...++.+..+..+|+.+++.+
T Consensus 148 ~~~~in~~l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~ 214 (1111)
T PF13514_consen 148 RKPEINQALKELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELRRLERLRRAW 214 (1111)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34466777777777777777 66777888888899999999999999999999999987753
No 266
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=74.39 E-value=36 Score=37.27 Aligned_cols=49 Identities=16% Similarity=0.260 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccC
Q 028818 83 KLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDED 131 (203)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d~~ 131 (203)
+-.+..+....|.++..+|.++.+.++.++.|++-+||..+..+++-+.
T Consensus 617 ~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek 665 (1317)
T KOG0612|consen 617 QRTEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEK 665 (1317)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566778899999999999999999999999999999988776544
No 267
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=74.32 E-value=24 Score=32.85 Aligned_cols=53 Identities=15% Similarity=0.303 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 028818 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFR 119 (203)
Q Consensus 66 i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FK 119 (203)
+..|++++..++..+. +|....+++.|..+.+..|.+++.++.+.++.++.|.
T Consensus 244 ~~~l~~~~~~~~~~i~-~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~ 296 (406)
T PF02388_consen 244 LESLQEKLEKLEKEIE-KLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELI 296 (406)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566665555553 4445555555777777778888888888888877764
No 268
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=74.09 E-value=93 Score=31.26 Aligned_cols=98 Identities=22% Similarity=0.316 Sum_probs=53.7
Q ss_pred chhhHHHHHHHHHHHHHHhhhh-----------hHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Q 028818 26 PFEQLDVARKITSIAISTRVSD-----------LESEHSALRSQLAEK----------DSRIAELQSQIESIYSSLSDKL 84 (203)
Q Consensus 26 P~EQLdlarkIts~A~atRVs~-----------LE~E~~~LR~~LaEK----------d~~i~~Lq~r~s~Le~~L~~rL 84 (203)
-|-||-||+|.=..-+..||.. |+.||...+..|..= .+.|..|+..+.-|.... .|+
T Consensus 196 ~F~~lsL~f~~D~~TLe~R~~~~eR~RdlaEeNl~kEi~~~~~~l~~l~~lc~~d~e~~e~~~kl~~~l~~l~~~~-~rv 274 (538)
T PF05781_consen 196 EFLRLSLGFKCDRFTLEKRLKLEERSRDLAEENLKKEIENCLKLLESLAPLCWEDNESREIIQKLQKSLDVLHQCA-TRV 274 (538)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 3779999999999999999864 444555555544311 122233333333322222 222
Q ss_pred HHHHHH------HHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHh
Q 028818 85 GQAQAD------KERLSKENEALTNTVRKLQR----DVSKLEVFRKTLVQ 124 (203)
Q Consensus 85 ~~a~ee------~~kL~~E~~~La~TvKkL~r----DvaKLE~FKk~Lmq 124 (203)
.-.-+. -.++.+--....+-|..|.| +-+.|+-|||.|+|
T Consensus 275 ss~AE~lGAv~QE~R~SkAvevM~qhvenLkr~~~kehaeL~E~k~~l~q 324 (538)
T PF05781_consen 275 SSRAEMLGAVHQESRVSKAVEVMIQHVENLKRMYEKEHAELEELKKLLLQ 324 (538)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 222111 12344444455555655554 55669999999887
No 269
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=73.87 E-value=57 Score=31.15 Aligned_cols=38 Identities=11% Similarity=0.220 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 028818 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFR 119 (203)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FK 119 (203)
.++..+..+..+|..+...|...+.+|.+++++|..-+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~ 175 (525)
T TIGR02231 138 SEIERLLTEDREAERRIRELEKQLSELQNELNALLTGK 175 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 55566666677777777777777777777777776543
No 270
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=73.77 E-value=94 Score=30.44 Aligned_cols=35 Identities=26% Similarity=0.363 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 028818 92 ERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (203)
Q Consensus 92 ~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSL 126 (203)
.+|......|...-+.|..-..+++.+.....+-|
T Consensus 104 ~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~l 138 (514)
T TIGR03319 104 ENLEKKEKELSNKEKNLDEKEEELEELIAEQREEL 138 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444433
No 271
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=73.54 E-value=16 Score=35.61 Aligned_cols=76 Identities=22% Similarity=0.311 Sum_probs=48.7
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH---
Q 028818 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKL--- 115 (203)
Q Consensus 42 atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL--- 115 (203)
.+|++.+|.|+..=|..-..-++ ..++.++.++-+.- ++|..-...+.-|.+|+.+|-.+||.|..|...|
T Consensus 219 ksr~~k~eee~aaERerglqtea---qvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~pN 295 (561)
T KOG1103|consen 219 KSRTKKGEEEAAAERERGLQTEA---QVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRPN 295 (561)
T ss_pred ccccCCChHHHHHHHhhccchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcc
Confidence 46788888887666653332222 22223333332221 5555666677778899999999999999998776
Q ss_pred HHHHH
Q 028818 116 EVFRK 120 (203)
Q Consensus 116 E~FKk 120 (203)
|.+|+
T Consensus 296 eqLk~ 300 (561)
T KOG1103|consen 296 EQLKG 300 (561)
T ss_pred ccccC
Confidence 56666
No 272
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=73.47 E-value=84 Score=29.78 Aligned_cols=52 Identities=19% Similarity=0.133 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 028818 29 QLDVARKITSIAISTRVSDLESEHSALRSQLA--EKDSRIAELQSQIESIYSSL 80 (203)
Q Consensus 29 QLdlarkIts~A~atRVs~LE~E~~~LR~~La--EKd~~i~~Lq~r~s~Le~~L 80 (203)
+|+-...=...|+..++..-+..+..|+..+. .-...+...+.++..+...|
T Consensus 263 rLd~l~~RL~~am~~~L~~~r~rL~~L~~RL~~~~P~~~L~~~~qrLd~L~~RL 316 (432)
T TIGR00237 263 RLDGFNVRLHRAFDTLLHQKKARLEQLVASLQRQHPQNKLALQQLQFEKLEKRK 316 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 34444444455788888877777777776654 12233444444444444433
No 273
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=73.37 E-value=24 Score=26.38 Aligned_cols=64 Identities=27% Similarity=0.317 Sum_probs=39.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028818 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-DKLGQAQADKERLSKENEALTNTVRKLQ 109 (203)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~-~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (203)
.|++.-+-.||.|.+.|+-...+ |++++..++.+.. .+=+....+...|.+.-..=+++|.+|.
T Consensus 13 ~~Ls~vl~~LqDE~~hm~~e~~~-------L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~L~ 77 (79)
T PF06657_consen 13 EALSEVLKALQDEFGHMKMEHQE-------LQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIYKLY 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47788888999999999887665 4455555555554 2222334445555555555555555553
No 274
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=73.04 E-value=20 Score=27.09 Aligned_cols=67 Identities=25% Similarity=0.282 Sum_probs=37.1
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H---HH-HHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 028818 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---D---KL-GQAQADKERLSKENEALTNTVRKLQRDVS 113 (203)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~---rL-~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (203)
...+-+.||.||..|..+|.+=...-.. |+.+|. . .+ ...-.....|..|-..|...|-+|.+.|.
T Consensus 6 ~~~~r~~LeqeV~~Lq~~L~~E~~~r~a-------Le~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~ 78 (88)
T PF14389_consen 6 LHERRSALEQEVAELQKQLQEEQDLRRA-------LEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVL 78 (88)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678999999999999854433333 344444 0 00 11122334455555555555555555544
Q ss_pred H
Q 028818 114 K 114 (203)
Q Consensus 114 K 114 (203)
-
T Consensus 79 ~ 79 (88)
T PF14389_consen 79 S 79 (88)
T ss_pred H
Confidence 3
No 275
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=72.72 E-value=49 Score=26.71 Aligned_cols=34 Identities=35% Similarity=0.510 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 48 LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
|++-...|+++.....+.|.+||.+|+.+-..+-
T Consensus 42 L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le 75 (107)
T PF09304_consen 42 LRNALQSLQAQNASRNQRIAELQAKIDEARRNLE 75 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666667777766666655553
No 276
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=72.69 E-value=16 Score=31.54 Aligned_cols=15 Identities=33% Similarity=0.479 Sum_probs=5.8
Q ss_pred hhhhhHHHHHHHHHH
Q 028818 44 RVSDLESEHSALRSQ 58 (203)
Q Consensus 44 RVs~LE~E~~~LR~~ 58 (203)
|+..|+.+..+|+.-
T Consensus 140 rl~~l~~~~~rl~~l 154 (262)
T PF14257_consen 140 RLKNLEAEEERLLEL 154 (262)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 277
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=72.63 E-value=97 Score=30.35 Aligned_cols=72 Identities=18% Similarity=0.300 Sum_probs=48.7
Q ss_pred CCCCChHHHHhh---CCCCc-----------hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 028818 10 STFDLPEEVLQV---LPSDP-----------FEQLDVARKITSIAISTRVSDLESEHSALRSQLA--EKDSRIAELQSQI 73 (203)
Q Consensus 10 ~~f~lp~eil~v---LP~DP-----------~EQLdlarkIts~A~atRVs~LE~E~~~LR~~La--EKd~~i~~Lq~r~ 73 (203)
.||-|+|-+.-+ -|+.. -++|+--++...+|+..++..-+..+..|+..+. .-++.+..-+.++
T Consensus 236 tD~tL~DfVAD~RApTPTaAAE~~vP~~~el~~~l~~~~~rL~~~~~~~l~~~~~~l~~l~~~l~~~~p~~~l~~~~q~l 315 (440)
T COG1570 236 TDFTLADFVADLRAPTPTAAAELVVPDSAELLQQLDQLQRRLHRALRRLLDQKKQRLEHLARRLQFRSPERLLSEQQQRL 315 (440)
T ss_pred CCccHHHhhhhccCCCchHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 477777765433 22222 2456666667777899999888888888888887 6666776666666
Q ss_pred HHHHHHHH
Q 028818 74 ESIYSSLS 81 (203)
Q Consensus 74 s~Le~~L~ 81 (203)
..+...|.
T Consensus 316 d~~~~rL~ 323 (440)
T COG1570 316 DELAIRLR 323 (440)
T ss_pred HHHHHHHH
Confidence 66665555
No 278
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=72.61 E-value=51 Score=35.77 Aligned_cols=68 Identities=16% Similarity=0.220 Sum_probs=32.2
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028818 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL-------SDKLGQAQADKERLSKENEALTNTVRKLQR 110 (203)
Q Consensus 43 tRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L-------~~rL~~a~ee~~kL~~E~~~La~TvKkL~r 110 (203)
.++..++.++...++.+.+-...+..++.++..++..+ ..+|.+..++...+.++...+...+..+..
T Consensus 882 ~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~ 956 (1353)
T TIGR02680 882 ARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAMVDEIRARLAETRAALASGGRELPRLAEALATAEE 956 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444333 355556666666666555555544443333
No 279
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=72.34 E-value=20 Score=24.39 Aligned_cols=27 Identities=33% Similarity=0.514 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 028818 86 QAQADKERLSKENEALTNTVRKLQRDV 112 (203)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (203)
....++..|.+||+.|...|..|..-+
T Consensus 16 ~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 16 SLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445667778888888888887776543
No 280
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=72.28 E-value=34 Score=32.90 Aligned_cols=96 Identities=18% Similarity=0.274 Sum_probs=70.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 028818 39 IAISTRVSDLESEHSALRSQLA-EKDSRIAELQSQIESIYSSLSDKLGQA---QADKERLSKENEALTNTVRKLQRDVSK 114 (203)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~La-EKd~~i~~Lq~r~s~Le~~L~~rL~~a---~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (203)
.+=.+|+..+=..+..|..... +.+..|+.|+++...++.++. +|..= .=+..++.++-..+.++++.|-.|..+
T Consensus 118 ~~TeSRl~tv~~~l~~la~~~~~Dp~~Ri~~Le~e~~~i~~EI~-~l~aG~~~~ld~~~~~er~~~i~~la~~L~~DFr~ 196 (478)
T PF11855_consen 118 VGTESRLNTVFDALRQLAEGTDPDPERRIAELEREIAEIDAEID-RLEAGDVPVLDDTQARERARQILQLARELPADFRR 196 (478)
T ss_pred cccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667899999999999999998 999999999999999999996 22211 112356677777888888888888887
Q ss_pred HHHHH----HHHHhhcccccCCCCC
Q 028818 115 LEVFR----KTLVQSLKDDEDASTG 135 (203)
Q Consensus 115 LE~FK----k~LmqSLq~d~~~~~~ 135 (203)
.+.-= +.|...+.+++.+-++
T Consensus 197 V~~~~r~l~r~lr~~i~~~~~~~G~ 221 (478)
T PF11855_consen 197 VEDNFRELDRALRERIIDWDGSRGE 221 (478)
T ss_pred HHHHHHHHHHHHHHHHhhccccHHH
Confidence 65433 4455555555554444
No 281
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=72.24 E-value=48 Score=31.65 Aligned_cols=57 Identities=14% Similarity=0.184 Sum_probs=27.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNT 104 (203)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~T 104 (203)
+..|...|+.++.+|- ..|..+++|+..+|..|..+....+.-..+|+.-.+.|.++
T Consensus 404 l~~~~~~l~~~i~~l~-------~~i~~~~~rl~~~e~rl~~qF~ame~~~s~mns~~s~L~~q 460 (462)
T PRK08032 404 IKTATDGVNKTLKKLT-------KQYNAVSDSIDATIARYKAQFTQLDKLMTSLNSTSSYLTQQ 460 (462)
T ss_pred chhHHhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444443 34444444444444444434444445555555555555554
No 282
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=72.01 E-value=46 Score=32.70 Aligned_cols=70 Identities=16% Similarity=0.278 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 028818 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (203)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (203)
+..++.|..++-..+...+..|..+-.+++....++.+|-....+.-.+|+. |...--.|.+.|+.||..
T Consensus 212 ~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~----lEt~q~~leqeva~le~y 281 (499)
T COG4372 212 AQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQR----LETAQARLEQEVAQLEAY 281 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
No 283
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=71.71 E-value=25 Score=32.87 Aligned_cols=63 Identities=24% Similarity=0.417 Sum_probs=34.9
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---------HHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 028818 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-DK---------LGQAQADKERLSKENEALTNTVRKLQRDV 112 (203)
Q Consensus 43 tRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~-~r---------L~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (203)
.+|..||..+.+|+..-..|.= ++.+||++|+ .| ......++..|.+.-++|..+-.||..|+
T Consensus 18 qKIqelE~QldkLkKE~qQrQf-------QleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdl 90 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQF-------QLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDL 90 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHH
Confidence 5788999999999865544443 3455566666 11 12222334444444455555555555544
No 284
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=71.61 E-value=19 Score=32.21 Aligned_cols=57 Identities=18% Similarity=0.244 Sum_probs=36.6
Q ss_pred HhhCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 028818 19 LQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQL---AEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 19 l~vLP~DP~EQLdlarkIts~A~atRVs~LE~E~~~LR~~L---aEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
-..||+|||+.= ...=++.++...-..+...--.+ .+++..+.++.+.+..||.+|.
T Consensus 87 ~~iLP~DPy~Ra------~arfwa~~id~~~~~~~~~~~~~~~~e~~~~~~~e~~e~l~~lE~el~ 146 (231)
T KOG0406|consen 87 PPILPSDPYERA------QARFWAEYIDKKVFFVGRFVVAAKGGEEQEAAKEELREALKVLEEELG 146 (231)
T ss_pred CCCCCCCHHHHH------HHHHHHHHHHhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHh
Confidence 357999999852 33345566655444444443333 4667777778888888888776
No 285
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=71.57 E-value=49 Score=31.13 Aligned_cols=27 Identities=15% Similarity=0.464 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028818 89 ADKERLSKENEALTNTVRKLQRDVSKL 115 (203)
Q Consensus 89 ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (203)
+...+|.+.+..|...+++|...+..|
T Consensus 375 ~~~~~l~~~~~~l~~~~~~l~~~~~~l 401 (451)
T PF03961_consen 375 EQLKKLKEKKKELKEELKELKEELKEL 401 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444433
No 286
>KOG4074 consensus Leucine zipper nuclear factor [Function unknown]
Probab=71.55 E-value=45 Score=31.78 Aligned_cols=73 Identities=22% Similarity=0.274 Sum_probs=54.5
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 028818 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQ-IESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (203)
Q Consensus 42 atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r-~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (203)
+.|-.+||.|..-||.+|-=-.....+|.+= |.++-..||.+.....+++.+|+.+++.+.+..-.+.-++.+
T Consensus 136 Sere~~l~~e~~~l~~ql~iqt~vNsELK~LlVASvgddLQ~~ve~LtedK~qLa~~~~~~~~nl~~~~Eq~er 209 (383)
T KOG4074|consen 136 SEREAELERELDLLRKQLNIQTKVNSELKRLLVASVGDDLQGQVEALTEDKVQLAHRVDEYMGNLMVEDEQSER 209 (383)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 4566689999999999998777777777543 456666777777788889999999998888776655444433
No 287
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=71.20 E-value=29 Score=31.57 Aligned_cols=8 Identities=25% Similarity=0.451 Sum_probs=3.7
Q ss_pred HHHHHHHH
Q 028818 115 LEVFRKTL 122 (203)
Q Consensus 115 LE~FKk~L 122 (203)
...|++.+
T Consensus 86 ~~~~~~~~ 93 (378)
T TIGR01554 86 VRAFIKGV 93 (378)
T ss_pred HHHHHHHh
Confidence 34455543
No 288
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=71.16 E-value=71 Score=30.32 Aligned_cols=57 Identities=26% Similarity=0.440 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 028818 65 RIAELQSQIESIYSSLS---------------------DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLV 123 (203)
Q Consensus 65 ~i~~Lq~r~s~Le~~L~---------------------~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~Lm 123 (203)
....|+-+++.+++.++ +-+....++|.||.-++..|-++.-.|..|. |.|+.|.-
T Consensus 52 ~aETLeln~ealere~eLlaa~gc~a~~e~gterqdLaa~i~etkeeNlkLrTd~eaL~dq~adLhgD~---elfReTeA 128 (389)
T KOG4687|consen 52 RAETLELNLEALERELELLAACGCDAKIEFGTERQDLAADIEETKEENLKLRTDREALLDQKADLHGDC---ELFRETEA 128 (389)
T ss_pred HHHHHHHHHHHHHhhhHHHHhcCCCchhhccchhhHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhchH---HHHHHHHH
Confidence 34556666666666554 3345677889999999999999999998885 56666654
Q ss_pred h
Q 028818 124 Q 124 (203)
Q Consensus 124 q 124 (203)
|
T Consensus 129 q 129 (389)
T KOG4687|consen 129 Q 129 (389)
T ss_pred H
Confidence 3
No 289
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=71.05 E-value=54 Score=34.96 Aligned_cols=10 Identities=20% Similarity=0.332 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 028818 95 SKENEALTNT 104 (203)
Q Consensus 95 ~~E~~~La~T 104 (203)
.++||.|.+-
T Consensus 535 l~~KD~~~~~ 544 (980)
T KOG0980|consen 535 LKQKDRLAAE 544 (980)
T ss_pred HHhhHHHHHH
Confidence 3344444333
No 290
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.95 E-value=28 Score=31.62 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 47 DLESEHSALRSQLAEKDSRIAELQSQ 72 (203)
Q Consensus 47 ~LE~E~~~LR~~LaEKd~~i~~Lq~r 72 (203)
.|..|++.+++++.+...++.+++++
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~ 79 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENK 79 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 291
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=70.90 E-value=44 Score=33.47 Aligned_cols=28 Identities=29% Similarity=0.370 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 49 ESEHSALRSQLAEKDSRIAELQSQIESI 76 (203)
Q Consensus 49 E~E~~~LR~~LaEKd~~i~~Lq~r~s~L 76 (203)
|.|+..+|.-+.+=.+..+.++..+..|
T Consensus 91 e~El~~ar~~l~e~~~~ra~~e~ei~kl 118 (546)
T KOG0977|consen 91 EAELATARKLLDETARERAKLEIEITKL 118 (546)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555544444443333333333333
No 292
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=70.89 E-value=1.3e+02 Score=31.50 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Q 028818 98 NEALTNTVRKLQRDVSKLEVFRKTL 122 (203)
Q Consensus 98 ~~~La~TvKkL~rDvaKLE~FKk~L 122 (203)
...+......+..+..+|+..++.+
T Consensus 262 ~~~~~~~~~~~~~~~~~l~~~~~~~ 286 (1042)
T TIGR00618 262 LKQLRARIEELRAQEAVLEETQERI 286 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555554443
No 293
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=70.82 E-value=23 Score=25.50 Aligned_cols=28 Identities=11% Similarity=0.178 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 028818 86 QAQADKERLSKENEALTNTVRKLQRDVS 113 (203)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (203)
...+...+.+++.+.|...++.|...|.
T Consensus 22 ~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 22 ELNDVVTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555555555555544433
No 294
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=70.34 E-value=77 Score=27.98 Aligned_cols=39 Identities=18% Similarity=0.348 Sum_probs=19.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (203)
Q Consensus 42 atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L 80 (203)
..|+..||..+..++..+.+=......|+..+..|+.-+
T Consensus 91 l~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki 129 (225)
T COG1842 91 LEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKI 129 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555544444444444444444443
No 295
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=70.27 E-value=60 Score=30.39 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=21.4
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhcccccCCC
Q 028818 103 NTVRKLQRDVSKLEVFRKTLVQSLKDDEDAS 133 (203)
Q Consensus 103 ~TvKkL~rDvaKLE~FKk~LmqSLq~d~~~~ 133 (203)
.....|.||+.-.++.=.++++..++.....
T Consensus 373 ~~l~~L~Re~~~~r~~ye~lL~r~qe~~~~~ 403 (458)
T COG3206 373 VQLRELEREAEAARSLYETLLQRYQELSIQE 403 (458)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455677777777777777888777775544
No 296
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=70.11 E-value=69 Score=31.65 Aligned_cols=76 Identities=22% Similarity=0.309 Sum_probs=41.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 028818 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (203)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~ 121 (203)
|.-|=+++..+|.++++=......|+++-+.|....+ .|+.. .|..++..|......|..++.+|...=..
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~------av~~~~~~~~~~~~ql~~~~~~~~~~l~~ 134 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQ------AVQSETQELTKEIEQLKSERQQLQGLIDQ 134 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH------HHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344466677777777777777777766666544433 33333 34444455555555555555555444444
Q ss_pred HHhhc
Q 028818 122 LVQSL 126 (203)
Q Consensus 122 LmqSL 126 (203)
|.+.|
T Consensus 135 l~~~l 139 (472)
T TIGR03752 135 LQRRL 139 (472)
T ss_pred HHHHH
Confidence 44433
No 297
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=70.10 E-value=41 Score=36.01 Aligned_cols=31 Identities=26% Similarity=0.209 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (203)
Q Consensus 50 ~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L 80 (203)
.|+..|+++|.+..+...+++.++...+..+
T Consensus 149 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (1123)
T PRK11448 149 QEVLTLKQQLELQAREKAQSQALAEAQQQEL 179 (1123)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Confidence 3444455555444444444444444444333
No 298
>PF11488 Lge1: Transcriptional regulatory protein LGE1
Probab=70.01 E-value=42 Score=24.82 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 028818 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS--DKLGQAQADKERLSKEN 98 (203)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~--~rL~~a~ee~~kL~~E~ 98 (203)
+..--..+..+|..|.+|+.++-.++..+. ..-...++-+.+|+.||
T Consensus 25 l~~~~~ei~~~d~~le~l~~q~~k~~~~~~~L~~~~~r~~l~vQlt~Ek 73 (80)
T PF11488_consen 25 LESRFKEIDSKDKELEELYQQDCKTEMEVKMLETQDPRDELNVQLTQEK 73 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHh
Confidence 444445566778888888877777775554 22222333344455444
No 299
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=69.77 E-value=50 Score=25.99 Aligned_cols=46 Identities=24% Similarity=0.349 Sum_probs=27.8
Q ss_pred HHHHHHHHH-HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 31 DVARKITSI-AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (203)
Q Consensus 31 dlarkIts~-A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~L 76 (203)
|+-+=+... ++..-...|+.+...++.++..+...+..+++++...
T Consensus 23 d~~~v~~~~~~~k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~ 69 (158)
T PF03938_consen 23 DVDKVFQESPAGKDAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQ 69 (158)
T ss_dssp -HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred eHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333 5566666777777777777777777766666555443
No 300
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=69.59 E-value=1.5 Score=43.52 Aligned_cols=89 Identities=20% Similarity=0.417 Sum_probs=0.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH----------HH
Q 028818 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKENEALTN----------TV 105 (203)
Q Consensus 42 atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~------~rL~~a~ee~~kL~~E~~~La~----------Tv 105 (203)
+.+...|-++++.||+.+.++.....+++.++..++.++. .-|...-++...|..|.|.|-. +|
T Consensus 238 ~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~v 317 (713)
T PF05622_consen 238 SVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEV 317 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3455566777888888888888877777777777777664 2222222344555555555533 33
Q ss_pred HHHhhhHHHHHHHHHHHHhhcccccC
Q 028818 106 RKLQRDVSKLEVFRKTLVQSLKDDED 131 (203)
Q Consensus 106 KkL~rDvaKLE~FKk~LmqSLq~d~~ 131 (203)
.+..+-+.-++.||+.+ ..|.+++.
T Consensus 318 e~YKkKLed~~~lk~qv-k~Lee~N~ 342 (713)
T PF05622_consen 318 EKYKKKLEDLEDLKRQV-KELEEDNA 342 (713)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 33333333444555554 56666554
No 301
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=69.58 E-value=35 Score=26.91 Aligned_cols=46 Identities=20% Similarity=0.336 Sum_probs=33.2
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028818 72 QIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (203)
Q Consensus 72 r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (203)
++..+|.++. +.+....+....|.+||..|.---.+|..-+.+++.
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444443 444477888889999999998888888888887776
No 302
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=69.58 E-value=4.9 Score=37.65 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028818 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (203)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (203)
...-+..+|..--..++-+|..|.+-|..||.
T Consensus 123 ~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs 154 (326)
T PF04582_consen 123 ALSTDVSNLKSDVSTQALNITDLESRVKALES 154 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhhhhhhhhhcchHhhHHHHHHHHhc
Confidence 34445557777777777777777777777763
No 303
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=69.53 E-value=94 Score=29.13 Aligned_cols=56 Identities=21% Similarity=0.213 Sum_probs=28.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Q 028818 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSKENE 99 (203)
Q Consensus 44 RVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~----------~rL~~a~ee~~kL~~E~~ 99 (203)
-++.||.+...++.+-..-..-|.+|+.+-..||.+-. .||.+|.++|+=|..|.+
T Consensus 92 q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELd 157 (333)
T KOG1853|consen 92 QESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELD 157 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444333333344444444444444322 677788888877765543
No 304
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=69.28 E-value=49 Score=31.90 Aligned_cols=42 Identities=29% Similarity=0.462 Sum_probs=27.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHH----------HHH---H-----HHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEK----------DSR---I-----AELQSQIESIYSSLS 81 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEK----------d~~---i-----~~Lq~r~s~Le~~L~ 81 (203)
+++.+...++.|+..||.++.+- ... + ..|++|+..++.++.
T Consensus 113 ~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~ 172 (511)
T PF09787_consen 113 VLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALK 172 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45667778888888888887764 111 1 555666666666665
No 305
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=69.13 E-value=21 Score=26.99 Aligned_cols=50 Identities=20% Similarity=0.320 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 31 DVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (203)
Q Consensus 31 dlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L 80 (203)
++...+...|...-...++.+...+...+.+-+....++..++..++.++
T Consensus 69 ~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~ 118 (120)
T PF11740_consen 69 ELMARLWEAAQEEAEEELEAARAELEQERAAAEAELAEAEAQAEELEAEL 118 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666677777777777777777777777777777777777666654
No 306
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=69.10 E-value=29 Score=31.61 Aligned_cols=79 Identities=20% Similarity=0.366 Sum_probs=51.3
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 028818 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (203)
Q Consensus 43 tRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (203)
..|.=+..++..+...+.+..+.+.+.+.++..++..|. ....+..+...|+..|...++...+-+.+-+ .|
T Consensus 214 ~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~----~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~----~L 285 (344)
T PF12777_consen 214 KEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLA----ALQKEYEEAQKEKQELEEEIEETERKLERAE----KL 285 (344)
T ss_dssp CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccHH----HH
Confidence 444456677777777777777777777777776666554 6666677777778888777776665443322 25
Q ss_pred Hhhcccc
Q 028818 123 VQSLKDD 129 (203)
Q Consensus 123 mqSLq~d 129 (203)
+.+|.++
T Consensus 286 i~~L~~E 292 (344)
T PF12777_consen 286 ISGLSGE 292 (344)
T ss_dssp HHCCHHH
T ss_pred Hhhhcch
Confidence 5555554
No 307
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=69.03 E-value=73 Score=28.13 Aligned_cols=37 Identities=24% Similarity=0.331 Sum_probs=17.2
Q ss_pred hHHHHHHHHHH--------HHHHhhhhhHHHHHHHHHHHHHHHHH
Q 028818 29 QLDVARKITSI--------AISTRVSDLESEHSALRSQLAEKDSR 65 (203)
Q Consensus 29 QLdlarkIts~--------A~atRVs~LE~E~~~LR~~LaEKd~~ 65 (203)
|.+|+.|.--+ -..+.+...|.++..|+..+..|..+
T Consensus 23 q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~E 67 (202)
T PF06818_consen 23 QAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLE 67 (202)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHh
Confidence 55666554333 22334444444555555444444443
No 308
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=69.00 E-value=45 Score=24.75 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 29 QLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 29 QLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
||--|.--..-+|..+-...++....|+..+..-.+..+.|.++|..|...+.
T Consensus 7 qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~ 59 (70)
T PF04899_consen 7 QLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQ 59 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 55555555566777777777777777777777666666677777766666664
No 309
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=68.77 E-value=13 Score=34.24 Aligned_cols=58 Identities=24% Similarity=0.399 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 028818 65 RIAELQSQIESIYSSLSDKLGQAQADKERLSKEN-EALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (203)
Q Consensus 65 ~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~-~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (203)
...+|++|-..|+.++. +...+.+++.+|- .+.+.+...|.+ +...||.-|+.||||=
T Consensus 5 ~L~eL~qrk~~Lq~eIe----~LerR~~ri~~EmrtsFaG~Sq~lA~---RVqGFkdYLvGsLQDL 63 (283)
T PF11285_consen 5 ALKELEQRKQALQIEIE----QLERRRERIEKEMRTSFAGQSQDLAI---RVQGFKDYLVGSLQDL 63 (283)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccccchHHHHH---HHhhhHHHHHHHHHHH
Confidence 34567777666666664 5555666666663 345555555555 3578999999999974
No 310
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=68.70 E-value=51 Score=25.33 Aligned_cols=42 Identities=29% Similarity=0.322 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 028818 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (203)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq 127 (203)
...+-..-|.+..+.|...+++|+.++.++..--.+++.-|+
T Consensus 83 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 83 DAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555667788888888888888888888877777766554
No 311
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=68.65 E-value=57 Score=34.74 Aligned_cols=34 Identities=12% Similarity=0.277 Sum_probs=14.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (203)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~ 78 (203)
...+|.++.....++.+-...+...+..+...+.
T Consensus 623 ~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (1201)
T PF12128_consen 623 QEELEKQLKQINKKIEELKREITQAEQELKQAEQ 656 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3444444444444444444444333333333333
No 312
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=68.60 E-value=1.4e+02 Score=30.87 Aligned_cols=112 Identities=21% Similarity=0.264 Sum_probs=62.9
Q ss_pred CChHHHHhhCCCCchhhHHHHHHHHHHHHHHhhhhhHHH-HHHHH-HH-------HHHHHHHHHHHHHHHHHHHH-----
Q 028818 13 DLPEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESE-HSALR-SQ-------LAEKDSRIAELQSQIESIYS----- 78 (203)
Q Consensus 13 ~lp~eil~vLP~DP~EQLdlarkIts~A~atRVs~LE~E-~~~LR-~~-------LaEKd~~i~~Lq~r~s~Le~----- 78 (203)
.++-+.+.-+|..-..-|++..+---..+..|+-.+..+ ...+| .. ..+.+.++.+|+..+.....
T Consensus 377 ~~~le~~k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~ 456 (698)
T KOG0978|consen 377 ELRLEMLKSLLKEQRDKLQVKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEM 456 (698)
T ss_pred HHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666655555555444455666666655543 33333 11 12223444455444333320
Q ss_pred ------------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 028818 79 ------------SLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (203)
Q Consensus 79 ------------~L~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~Lmq 124 (203)
+.+ --+..+.+.|-+|-.|+...-+..|.|..+..+|+.-..+|-.
T Consensus 457 ~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~ 517 (698)
T KOG0978|consen 457 ETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKA 517 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 2334677777788888888888888888877777776666544
No 313
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=68.27 E-value=46 Score=30.57 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 56 RSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 56 R~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
|.+.-|.+..++-|+.|++.++..+.
T Consensus 160 ~~~~~e~d~rnq~l~~~i~~l~~~l~ 185 (264)
T PF07246_consen 160 KTQERENDRRNQILSHEISNLTNELS 185 (264)
T ss_pred HhhchhhhhHHHHHHHHHHHhhhhHH
Confidence 44444556666666666666666665
No 314
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=68.20 E-value=1.4e+02 Score=30.73 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 028818 31 DVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAE 68 (203)
Q Consensus 31 dlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~ 68 (203)
+-|++|..- ...++..|=.++.+.|..+.++.+.+..
T Consensus 500 ~~A~~~~~~-~~~~~~~li~~L~~~~~~~e~~~~~~~~ 536 (771)
T TIGR01069 500 EQAKTFYGE-FKEEINVLIEKLSALEKELEQKNEHLEK 536 (771)
T ss_pred HHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555432 3334444444444444444444443333
No 315
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=68.12 E-value=37 Score=23.53 Aligned_cols=34 Identities=24% Similarity=0.474 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028818 83 KLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (203)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (203)
.+....+....|..+|..|...+..|...+..|+
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666666666666666665555554
No 316
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=68.07 E-value=40 Score=32.95 Aligned_cols=59 Identities=24% Similarity=0.327 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 028818 52 HSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (203)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (203)
+.+|-..|..|..++.-+..++..++. |...+.+++.+|.-.-+.|....|.|...+.+
T Consensus 434 vdrl~~~L~qk~~~~~k~~~~~~~l~~----kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 434 VDRLVESLQQKLKQEEKLRRKREDLEE----KRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 566666666676666666666555554 44588999999999999999999998877654
No 317
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.95 E-value=50 Score=30.90 Aligned_cols=65 Identities=25% Similarity=0.429 Sum_probs=40.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028818 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (203)
Q Consensus 46 s~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (203)
.+||++...|-.+..+=+..+..|++.+..+...+. ..+.+|....+.|.++.-.|.|++.|||.
T Consensus 118 ~k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~-------~qq~Els~~L~~l~~~~~~~s~~~~k~es 182 (300)
T KOG2629|consen 118 DKLEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLA-------TQQSELSRALASLKNTLVQLSRNIEKLES 182 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 356666666666655555555555555554444332 22337777777887777777777777774
No 318
>PRK11519 tyrosine kinase; Provisional
Probab=67.87 E-value=76 Score=31.82 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=16.9
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhccccc
Q 028818 104 TVRKLQRDVSKLEVFRKTLVQSLKDDE 130 (203)
Q Consensus 104 TvKkL~rDvaKLE~FKk~LmqSLq~d~ 130 (203)
....|.||+.--+.+=..|++.+++-.
T Consensus 371 ~~~~L~Re~~~~~~lY~~lL~r~~e~~ 397 (719)
T PRK11519 371 EIVRLTRDVESGQQVYMQLLNKQQELK 397 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566777666666666777666543
No 319
>PLN03188 kinesin-12 family protein; Provisional
Probab=67.76 E-value=81 Score=34.80 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHh
Q 028818 68 ELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV-SKLEVFRKTLVQ 124 (203)
Q Consensus 68 ~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv-aKLE~FKk~Lmq 124 (203)
+|==|+-..|.++. .|.++-+....|+..|-..+.||.|.- -.+.++|..|-.
T Consensus 1201 ellvrl~eaeea~~----~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~q~~ae 1254 (1320)
T PLN03188 1201 ELLVRLKEAEEALT----VAQKRAMDAEQEAAEAYKQIDKLKRKHENEISTLNQLVAE 1254 (1320)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34344444444443 334444555556665656666666665 556677766643
No 320
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=67.71 E-value=53 Score=25.09 Aligned_cols=61 Identities=18% Similarity=0.373 Sum_probs=41.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 028818 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLV 123 (203)
Q Consensus 44 RVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~Lm 123 (203)
|+.++..|+.+-|.+++ ++|.|+-.|+.+.. .-||......|+.++=+...|-.|-+..-
T Consensus 2 KleKi~~eieK~k~Kia-------e~Q~rlK~Le~qk~-------------E~EN~EIv~~VR~~~mtp~eL~~~L~~~~ 61 (83)
T PF14193_consen 2 KLEKIRAEIEKTKEKIA-------ELQARLKELEAQKT-------------EAENLEIVQMVRSMKMTPEELAAFLRAMK 61 (83)
T ss_pred hHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH-------------HHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 55667777777775544 55555555554443 44677778889999988888888887764
Q ss_pred h
Q 028818 124 Q 124 (203)
Q Consensus 124 q 124 (203)
.
T Consensus 62 ~ 62 (83)
T PF14193_consen 62 S 62 (83)
T ss_pred h
Confidence 3
No 321
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=67.61 E-value=1.1e+02 Score=30.76 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=19.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 45 VSDLESEHSALRSQLAEKDSRIAELQSQI 73 (203)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~ 73 (203)
+.=|+.++..++++|.+-++.+.+.+.+.
T Consensus 269 ~~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 269 LEFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34466667777777777777777766654
No 322
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=67.53 E-value=50 Score=24.77 Aligned_cols=76 Identities=24% Similarity=0.347 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 028818 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (203)
Q Consensus 50 ~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSL 126 (203)
.++-.|-++..+-...+.+|+.+.+.+-.++. .++..-++...|..|-..|...++.|..++..++.=-..++-+|
T Consensus 29 d~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~-~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~~i 104 (108)
T PF02403_consen 29 DEIIELDQERRELQQELEELRAERNELSKEIG-KLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELLLSI 104 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34444444444555555666666666655554 22222245556666666666666666666666665555555443
No 323
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=67.52 E-value=55 Score=25.20 Aligned_cols=24 Identities=8% Similarity=0.293 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 028818 86 QAQADKERLSKENEALTNTVRKLQ 109 (203)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~ 109 (203)
...++|.+|..|..+-...++.|-
T Consensus 50 ~L~~en~qLk~E~~~WqerLr~LL 73 (79)
T PRK15422 50 ELERENNHLKEQQNGWQERLQALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777777777777666653
No 324
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=67.28 E-value=53 Score=24.98 Aligned_cols=33 Identities=15% Similarity=0.338 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 028818 90 DKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (203)
Q Consensus 90 e~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (203)
+..+|...++.|+..+-+......+||.--+-+
T Consensus 40 ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Ev 72 (89)
T PF13747_consen 40 EIQRLDADRSRLAQELDQAEARANRLEEANREV 72 (89)
T ss_pred HHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443333
No 325
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=67.28 E-value=98 Score=28.45 Aligned_cols=41 Identities=24% Similarity=0.183 Sum_probs=26.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
|..|++-|=.|++.+-...+.+-.....-=+.|-..|.+|+
T Consensus 101 IsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~sl~ 141 (271)
T PF13805_consen 101 ISDKLGVLLYEIGELEDQYADRLDQYRIHLKSIRNREESLQ 141 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777777777777777666666555555666666666
No 326
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=67.20 E-value=1.1e+02 Score=28.69 Aligned_cols=80 Identities=23% Similarity=0.339 Sum_probs=45.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHH
Q 028818 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKER-LSKENEALTNTVRKLQRDVS 113 (203)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~k-L~~E~~~La~TvKkL~rDva 113 (203)
..++--|++.|++|---||++|.+--....--++-|..++..++ .+|..-.++..- |.+.|..|++--.-|.-.+-
T Consensus 216 qes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~~ 295 (305)
T PF14915_consen 216 QESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKERLY 295 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34788999999999999999998644444333444555555554 233222222222 33333345555555544444
Q ss_pred HHHH
Q 028818 114 KLEV 117 (203)
Q Consensus 114 KLE~ 117 (203)
+.|.
T Consensus 296 qyEk 299 (305)
T PF14915_consen 296 QYEK 299 (305)
T ss_pred HHHH
Confidence 4443
No 327
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=66.87 E-value=51 Score=29.10 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=8.6
Q ss_pred HHHHhhhhhHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQL 59 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L 59 (203)
+++.-.+..|+||..|-..|
T Consensus 97 ~l~~t~s~veaEik~L~s~L 116 (201)
T KOG4603|consen 97 SLQQTCSYVEAEIKELSSAL 116 (201)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 33334444444444444433
No 328
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=66.80 E-value=18 Score=27.59 Aligned_cols=36 Identities=17% Similarity=0.297 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 028818 84 LGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFR 119 (203)
Q Consensus 84 L~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FK 119 (203)
|.....+..|--+....+...+|.|.+..--+|+.=
T Consensus 3 leKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN~E 38 (83)
T PF14193_consen 3 LEKIRAEIEKTKEKIAELQARLKELEAQKTEAENLE 38 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666666666777776666666553
No 329
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=66.75 E-value=46 Score=28.81 Aligned_cols=27 Identities=15% Similarity=0.358 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 52 HSALRSQLAEKDSRIAELQSQIESIYS 78 (203)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s~Le~ 78 (203)
...+..+..+-+.++..++.....|..
T Consensus 127 ~~DvT~~y~D~~arl~~l~~~~~rl~~ 153 (262)
T PF14257_consen 127 SEDVTEQYVDLEARLKNLEAEEERLLE 153 (262)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443333
No 330
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=66.75 E-value=80 Score=26.83 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 028818 86 QAQADKERLSKEN 98 (203)
Q Consensus 86 ~a~ee~~kL~~E~ 98 (203)
........+.+..
T Consensus 145 ~l~~~~e~~ek~~ 157 (189)
T PF10211_consen 145 ELKNKCEQLEKRE 157 (189)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 331
>PHA03332 membrane glycoprotein; Provisional
Probab=66.74 E-value=1e+02 Score=33.82 Aligned_cols=55 Identities=13% Similarity=0.224 Sum_probs=37.3
Q ss_pred HhhhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 43 TRVSDLESEHSALRSQLA----EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKE 97 (203)
Q Consensus 43 tRVs~LE~E~~~LR~~La----EKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E 97 (203)
.||+.|..-+..|=..++ +-|+.|.+-..|++.||.++-.|+.......++|+..
T Consensus 905 aAV~~lsDai~klGnti~kisatl~~nI~avNgRIs~Led~VN~r~~~v~~~intLA~q 963 (1328)
T PHA03332 905 ARVDKTSDVITKLGDTIAKISATLDNNIRAVNGRVSDLEDQVNLRFLAVATNFNTLATQ 963 (1328)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666665555555443 5677788888888888888876666666666666555
No 332
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.55 E-value=73 Score=30.55 Aligned_cols=85 Identities=19% Similarity=0.271 Sum_probs=57.4
Q ss_pred HhhCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 19 LQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKEN 98 (203)
Q Consensus 19 l~vLP~DP~EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~ 98 (203)
..+-|.+|-+-+- =|.+=.++-..+||..+.|+-.....+|+-+..-+. ......++|..++
T Consensus 194 ~~~yp~n~~~~~~-----------irasvisa~~eklR~r~eeeme~~~aeq~slkRt~E-------eL~~G~~kL~~~~ 255 (365)
T KOG2391|consen 194 AEPYPPNASGKLV-----------IRASVISAVREKLRRRREEEMERLQAEQESLKRTEE-------ELNIGKQKLVAMK 255 (365)
T ss_pred CCcCCCCcccccc-----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-------HHHhhHHHHHHHH
Confidence 3456666666554 233344555667777766665555555444444443 4456778999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Q 028818 99 EALTNTVRKLQRDVSKLEVFRKT 121 (203)
Q Consensus 99 ~~La~TvKkL~rDvaKLE~FKk~ 121 (203)
..|..++-+|+.+.+-|.+-++-
T Consensus 256 etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 256 ETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999998887776
No 333
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=66.42 E-value=1e+02 Score=29.20 Aligned_cols=88 Identities=19% Similarity=0.304 Sum_probs=43.8
Q ss_pred HHhhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH---HHHH------HHHHHHHHH
Q 028818 42 STRVSDLESEHSALRSQLAEK-----DSRIAELQSQIESIYSSLS--DKLGQAQADKE---RLSK------ENEALTNTV 105 (203)
Q Consensus 42 atRVs~LE~E~~~LR~~LaEK-----d~~i~~Lq~r~s~Le~~L~--~rL~~a~ee~~---kL~~------E~~~La~Tv 105 (203)
..++..++.++..|...+.+- .....++-++++.|+..+. .++....++.. .|.+ -..-+...+
T Consensus 5 ~~~~e~~~~~~~~le~~~~~~~~w~d~~~~~~~~~e~~~L~~~v~~~~~~~~~~~~~~~~~~l~~~e~D~~~~~~~~~e~ 84 (359)
T PRK00591 5 LDKLEALEERYEELEALLSDPEVISDQKRFRKLSKEYAELEPIVEAYREYKQAQEDLEEAKEMLEEESDPEMREMAKEEL 84 (359)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 345556666666666655432 1223333334444444333 33333333222 2221 122344567
Q ss_pred HHHhhhHHHHHH-HHHHHHhhcccc
Q 028818 106 RKLQRDVSKLEV-FRKTLVQSLKDD 129 (203)
Q Consensus 106 KkL~rDvaKLE~-FKk~LmqSLq~d 129 (203)
.+|..+|.+|+. ++..||-+-..|
T Consensus 85 ~~l~~~l~~~e~~l~~~ll~~~~~D 109 (359)
T PRK00591 85 KELEERLEELEEELKILLLPKDPND 109 (359)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 888888888886 666666554444
No 334
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=66.40 E-value=26 Score=34.45 Aligned_cols=47 Identities=17% Similarity=0.249 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028818 65 RIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (203)
Q Consensus 65 ~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (203)
.+.+-|.+.+.||.+|. ..+++.+.+.+.+..+...+++|..++..|
T Consensus 70 ALteqQ~kasELEKqLa----aLrqElq~~saq~~dle~KIkeLEaE~~~L 116 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYE----EIRRELDVLNKQRGDDQRRIEKLGQDNAAL 116 (475)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 34555556666665553 223444444455555555555555444443
No 335
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=66.37 E-value=22 Score=29.24 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 48 LESEHSALRSQLAEKDSRIAELQSQ 72 (203)
Q Consensus 48 LE~E~~~LR~~LaEKd~~i~~Lq~r 72 (203)
|++++..+|..+...+..+..|+.+
T Consensus 78 l~a~~~e~qsli~~yE~~~~kLe~e 102 (131)
T PF04859_consen 78 LAAEIQEQQSLIKTYEIVVKKLEAE 102 (131)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433333
No 336
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=66.09 E-value=67 Score=31.88 Aligned_cols=64 Identities=16% Similarity=0.286 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 028818 63 DSRIAELQSQIESIYSSLS---DKLGQAQADKER-----------LSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (203)
Q Consensus 63 d~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~k-----------L~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSL 126 (203)
...+.++++|+..++..=. ..+..+.++..+ ...-++.|.+-.+.+..+++.|+.-.+.=+..|
T Consensus 190 ~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ap~~D~~~L 267 (555)
T TIGR03545 190 KQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKAPQNDLKRL 267 (555)
T ss_pred chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccHhHHHHH
Confidence 3345555566655554311 233344444444 444444455555555555555655554433333
No 337
>KOG2417 consensus Predicted G-protein coupled receptor [Signal transduction mechanisms]
Probab=66.08 E-value=22 Score=34.62 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Q 028818 99 EALTNTVRKLQRDVSKLEVFRKTLVQ 124 (203)
Q Consensus 99 ~~La~TvKkL~rDvaKLE~FKk~Lmq 124 (203)
++++..++.|+.+|.-||.+-|+|.-
T Consensus 245 ~~~~~~i~~lq~EV~~LEeLsrqLFL 270 (462)
T KOG2417|consen 245 NTLSSDIKLLQQEVEPLEELSRQLFL 270 (462)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777776643
No 338
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=65.96 E-value=70 Score=25.86 Aligned_cols=70 Identities=24% Similarity=0.225 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 028818 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (203)
Q Consensus 48 LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq 127 (203)
|-.....|-++|+-=.+.|..|++.+...+..|. +-.+.-..|..+++.+.+.+.+++.=.+.+++-..
T Consensus 25 ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le-----------~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~~~ 93 (160)
T PF13094_consen 25 LLDRKRALERQLAANLHQLELLQEEIEKEEAALE-----------RDYEYLQELEKNAKALEREREEEEKKAHPVLQLDD 93 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhccchhhcccc
Confidence 3333444555555555566667777666666664 22333445666777777777766654466666543
Q ss_pred c
Q 028818 128 D 128 (203)
Q Consensus 128 ~ 128 (203)
.
T Consensus 94 ~ 94 (160)
T PF13094_consen 94 S 94 (160)
T ss_pred c
Confidence 3
No 339
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=65.91 E-value=61 Score=32.17 Aligned_cols=64 Identities=25% Similarity=0.311 Sum_probs=48.9
Q ss_pred HHhhCCCCchh--hHHHHH--------HHHHH-----HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 18 VLQVLPSDPFE--QLDVAR--------KITSI-----AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 18 il~vLP~DP~E--QLdlar--------kIts~-----A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
...|-|.||+. +|.+.- -||++ -+-.-|..|.+|...|...|.-+.++..+|+.--+.|...+.
T Consensus 99 t~~w~~ddpDi~~~l~gvnSGLvrAKDSItSlKekt~~vnQHVq~LQseCsvlsEnLErrrQEaeELEgyCsqLk~nCr 177 (558)
T PF15358_consen 99 TPPWAPDDPDITELLEGVNSGLVRAKDSITSLKEKTSRVNQHVQTLQSECSVLSENLERRRQEAEELEGYCSQLKENCR 177 (558)
T ss_pred CCCCCCCCccHHHHHhhhcccceecccchhhHHHhhHHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 34588999986 665432 37776 455567889999999999999888899999888888877665
No 340
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=65.89 E-value=16 Score=32.16 Aligned_cols=36 Identities=19% Similarity=0.436 Sum_probs=21.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (203)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L 80 (203)
...+|++.-.|+..+..++..+++||++...++..+
T Consensus 138 ~D~~eA~~t~lk~~~~~~~~~le~Lqkn~~~~~k~~ 173 (192)
T COG5374 138 IDKMEADSTDLKARLRKAQILLEGLQKNQEELFKLL 173 (192)
T ss_pred hhhhhcchHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666555554443
No 341
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=65.72 E-value=29 Score=34.69 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 028818 87 AQADKERLSKENEALTNTVRKLQ 109 (203)
Q Consensus 87 a~ee~~kL~~E~~~La~TvKkL~ 109 (203)
.......|..||..|...++.|.
T Consensus 564 k~~~l~~L~~En~~L~~~l~~le 586 (722)
T PF05557_consen 564 KKSTLEALQAENEDLLARLRSLE 586 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34566677777777777665554
No 342
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=65.70 E-value=79 Score=32.44 Aligned_cols=85 Identities=25% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 028818 42 STRVSDLES-EHSALRSQLAEKDSRIAELQSQIESIYSSLS--DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (203)
Q Consensus 42 atRVs~LE~-E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~--~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (203)
...+..+.. ++..|+.++.. +.++..|...+..++..+. .+.. ...........+.+...++++...+++++.+
T Consensus 472 ~~~~~~~~~~el~~l~~~i~~-~~~~~~l~~e~~~l~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~e~l~~~~e~~~~~ 548 (908)
T COG0419 472 EKELLELYELELEELEEELSR-EKEEAELREEIEELEKELRELEEEL--IELLELEEALKEELEEKLEKLENLLEELEEL 548 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHhHHHHHHHHHHHHHHHHHHHhH
Q ss_pred HHHH-Hhhcccc
Q 028818 119 RKTL-VQSLKDD 129 (203)
Q Consensus 119 Kk~L-mqSLq~d 129 (203)
+..+ .+.++.+
T Consensus 549 ~~~~~~~~l~~e 560 (908)
T COG0419 549 KEKLQLQQLKEE 560 (908)
T ss_pred HHHHHHHHHHHH
No 343
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=65.62 E-value=68 Score=26.91 Aligned_cols=62 Identities=18% Similarity=0.193 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 028818 61 EKDSRIAELQSQIESIYSSLS--DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLV 123 (203)
Q Consensus 61 EKd~~i~~Lq~r~s~Le~~L~--~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~Lm 123 (203)
.|++.+.==|+|-+--.+-+. =|.+.. +.+..|.++|..|.+.|++|.++++.+-.=.-.++
T Consensus 45 ~reEVvrlKQrRRTLKNRGYA~sCR~KRv-~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k 108 (135)
T KOG4196|consen 45 SREEVVRLKQRRRTLKNRGYAQSCRVKRV-QQKHELEKEKAELQQQVEKLKEENSRLRRELDAYK 108 (135)
T ss_pred CHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555544444433333333 344444 34678999999999999999999988654443333
No 344
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=65.54 E-value=24 Score=35.99 Aligned_cols=45 Identities=18% Similarity=0.298 Sum_probs=33.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 37 TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 37 ts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
|+.++-..|..||.++.+.++.|.+++.++.+|.++++.++.+++
T Consensus 18 t~~~~~~~v~~l~~~v~~kd~elr~rqt~~~~l~~~~~~~~~~i~ 62 (732)
T KOG0614|consen 18 TARELQNLVPQLEEAVQRKDAELRQRQTILEELIKEISKLEGEIA 62 (732)
T ss_pred chHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 455666778888888888888888888888887777776666554
No 345
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=65.49 E-value=47 Score=23.74 Aligned_cols=67 Identities=21% Similarity=0.350 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028818 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKL-GQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (203)
Q Consensus 49 E~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL-~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (203)
+.+++..++.+.+....+..|+..+..+...+.+.. .....+......-...|...++.+...+..+
T Consensus 4 ~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~ 71 (123)
T PF02050_consen 4 EQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERL 71 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666644444111 1122333334444444444444444444443
No 346
>PF14282 FlxA: FlxA-like protein
Probab=65.40 E-value=40 Score=26.16 Aligned_cols=42 Identities=19% Similarity=0.392 Sum_probs=31.8
Q ss_pred HHHHhhhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQ----LAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~----LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
.|..++..|..++..|... -.+|...+..|+.++..|+.+|.
T Consensus 23 ~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~ 68 (106)
T PF14282_consen 23 QLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIA 68 (106)
T ss_pred HHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777772 23778888888888888888886
No 347
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=65.26 E-value=1.3e+02 Score=28.62 Aligned_cols=85 Identities=19% Similarity=0.308 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH--------
Q 028818 32 VARKITSIAISTRVSDLESEHSALRSQLAE-----KDSRIAELQSQIESIYSSLS--DKLGQAQADKERLSK-------- 96 (203)
Q Consensus 32 larkIts~A~atRVs~LE~E~~~LR~~LaE-----Kd~~i~~Lq~r~s~Le~~L~--~rL~~a~ee~~kL~~-------- 96 (203)
|+++|....=.-.+..++.+...|...+.+ ....+..|-++++.|...+. .++....++...+.+
T Consensus 12 ~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~p~~~~d~~~~~~l~ke~~~L~~iv~~~~~l~~~~~e~~~~~ell~~e~D~ 91 (367)
T PRK00578 12 LDEKLENIRGVLDVDALKERLEELEAEAEDPDFWNDQERAQKVTKELSSLKAKLDTLEELRQRLDDLEELLELAEEEDDE 91 (367)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH
Confidence 555555554445555666666666666643 12334455555555555554 444444444332221
Q ss_pred -HHHHHHHHHHHHhhhHHHHH
Q 028818 97 -ENEALTNTVRKLQRDVSKLE 116 (203)
Q Consensus 97 -E~~~La~TvKkL~rDvaKLE 116 (203)
-+..+...++.|...+.+||
T Consensus 92 el~~~a~~e~~~l~~~l~~le 112 (367)
T PRK00578 92 ETLAEAEAELKALEKKLAALE 112 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 12345567788888888888
No 348
>PF05859 Mis12: Mis12 protein; InterPro: IPR008685 Kinetochores are the chromosomal sites for spindle interaction and play a vital role for chromosome segregation. Fission Saccharomyces cerevisiae kinetochore protein Mis12, is required for correct spindle morphogenesis, determining metaphase spindle length []. Thirty-five to sixty percent extension of metaphase spindle length takes place in Mis12 mutants []. It has been shown that Mis12 might genetically interact with Mal2p [].; GO: 0007049 cell cycle, 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=65.15 E-value=5.4 Score=32.17 Aligned_cols=55 Identities=29% Similarity=0.394 Sum_probs=38.6
Q ss_pred CCCChHHHH--hhCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 028818 11 TFDLPEEVL--QVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQ 70 (203)
Q Consensus 11 ~f~lp~eil--~vLP~DP~EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq 70 (203)
=|.+|.++| .|+...+++-+++.. .-...-..|+.|+..||.+|.+.-..-..|+
T Consensus 86 if~IP~~llp~~~~~l~~~~~~~~~~-----~~~~~~~~ld~el~~lr~kL~~~~~~~~~L~ 142 (144)
T PF05859_consen 86 IFSIPEDLLPEDWIRLYHHEGLDFSS-----NQLEEDYELDAELEQLRRKLEEQRKLNAELE 142 (144)
T ss_pred cccCChhhcchhhhcccccccccccc-----ccccchhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 478896665 366666777666554 3344567888999999999888777666664
No 349
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=65.12 E-value=85 Score=33.91 Aligned_cols=77 Identities=17% Similarity=0.270 Sum_probs=48.7
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 028818 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (203)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (203)
.-+..++...|.++..||..+..+...+.+|++++......+. .......-+-+|+..+-..+++.++-.+++|+.
T Consensus 625 ~~l~~~~~~~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le----~~~~~~~~~~~er~~~~~~~~~~~~r~~~ie~~ 700 (1072)
T KOG0979|consen 625 PVLEELDNRIEEEIQKLKAEIDIRSSTLRELEEKKQKERKELE----EEQKKLKLLKRERTKLNSELKSYQQRKERIENL 700 (1072)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3445556667888888888888888888888888777766665 333333444445555555555555555555554
Q ss_pred H
Q 028818 119 R 119 (203)
Q Consensus 119 K 119 (203)
+
T Consensus 701 ~ 701 (1072)
T KOG0979|consen 701 V 701 (1072)
T ss_pred H
Confidence 3
No 350
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=64.91 E-value=36 Score=32.02 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 028818 95 SKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (203)
Q Consensus 95 ~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (203)
.+....|..+.++|.+.+.+|+.-.+.|...|...
T Consensus 374 ~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 374 KEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555555666666666655555555555443
No 351
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=64.85 E-value=1.3e+02 Score=30.15 Aligned_cols=16 Identities=19% Similarity=0.268 Sum_probs=8.5
Q ss_pred HhhhhhHHHHHHHHHH
Q 028818 43 TRVSDLESEHSALRSQ 58 (203)
Q Consensus 43 tRVs~LE~E~~~LR~~ 58 (203)
.++..++.|+..+-++
T Consensus 346 q~~~~~~~~l~~~~~~ 361 (656)
T PRK06975 346 RKVDRLDQELVQRQQA 361 (656)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566666665544443
No 352
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=64.80 E-value=41 Score=36.72 Aligned_cols=65 Identities=23% Similarity=0.408 Sum_probs=44.3
Q ss_pred HHHHHHHHHHH------HHhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Q 028818 31 DVARKITSIAI------STRVSDLESEHSALRSQLAEKDS-RIAELQSQIESIYSSLS-------DKLGQAQADKERLS 95 (203)
Q Consensus 31 dlarkIts~A~------atRVs~LE~E~~~LR~~LaEKd~-~i~~Lq~r~s~Le~~L~-------~rL~~a~ee~~kL~ 95 (203)
|=|+||..+|+ +.=+..|-.|+..||.+|..+++ ...+|++|+..++.-+. .||+..++-+..++
T Consensus 346 drAkrIvN~avvNedpnarvirElReEve~lr~qL~~ae~~~~~el~e~l~esekli~ei~~twEEkl~ktE~in~erq 424 (1714)
T KOG0241|consen 346 DRAKRIVNHAVVNEDPNARVIRELREEVEKLREQLEQAEAMKLPELKEKLEESEKLIKEITVTWEEKLRKTEEINQERQ 424 (1714)
T ss_pred HHHHHhhccccccCCchHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 67899999987 34456788899999999987554 45777777777666444 45544444443333
No 353
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=64.76 E-value=86 Score=31.50 Aligned_cols=75 Identities=25% Similarity=0.389 Sum_probs=35.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHH
Q 028818 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ---RDVSKLEVFRKTL 122 (203)
Q Consensus 46 s~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~---rDvaKLE~FKk~L 122 (203)
..|..++..|+.++.+-...+..++..+..++.++. ....++..|.++......++.=|. ..|+||+.+-..-
T Consensus 331 ~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~----~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s 406 (594)
T PF05667_consen 331 EELQEQLDELESQIEELEAEIKMLKSSLKQLEEELE----EKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEAS 406 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444443 455555555555554444433332 3456666554444
Q ss_pred Hh
Q 028818 123 VQ 124 (203)
Q Consensus 123 mq 124 (203)
++
T Consensus 407 ~~ 408 (594)
T PF05667_consen 407 EQ 408 (594)
T ss_pred HH
Confidence 33
No 354
>PF09302 XLF: XLF (XRCC4-like factor); InterPro: IPR015381 XLF (also called Cernunnos) interacts with the XRCC4-DNA ligase IV complex to promote DNA non-homologous end-joining. It directly interacts with the XRCC4-Ligase IV complex and siRNA-mediated downregulation of XLF in human cell lines leads to radio-sensitivity and impaired DNA non-homologous end-joining []. XLF is homologous to the yeast non-homologous end-joining factor Nej1 []. ; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z56_A 3RWR_D 3Q4F_A 3SR2_H 2R9A_A 2QM4_C.
Probab=64.50 E-value=9.9 Score=30.82 Aligned_cols=43 Identities=26% Similarity=0.386 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 31 DVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIE 74 (203)
Q Consensus 31 dlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s 74 (203)
.+++.+..- +...+..++.++..|...|.+||..|..|.++++
T Consensus 128 ~~~~~L~~P-ll~~~~~l~~~~~~L~~~l~~KD~~i~~l~~~~~ 170 (171)
T PF09302_consen 128 QFLSHLNSP-LLRMSSALQRQVESLKDLLKEKDKEIEKLRDKLE 170 (171)
T ss_dssp HHHHHTHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455544433 3455678888999999999999999999987653
No 355
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=64.45 E-value=31 Score=33.25 Aligned_cols=36 Identities=22% Similarity=0.342 Sum_probs=23.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
|-+||.|+.-+...-.-..+ +..|+.....++..+.
T Consensus 324 i~ELe~Ei~~~~~~~~~~~~-l~~L~~~~~~~~~~~~ 359 (448)
T PF05761_consen 324 IPELEQEIEIWNSKKYRFEE-LQELEELLEELQDHLD 359 (448)
T ss_dssp -TTHHHHHHHHHHTHHHHHH-HHHHHHHCHHHHCHHH
T ss_pred ehhhhhhhhhhhhcchhhhH-HHHHHHHHHHHHHHhc
Confidence 56899998887766543333 7777777776666654
No 356
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=64.20 E-value=49 Score=23.44 Aligned_cols=52 Identities=19% Similarity=0.362 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhHHHHH
Q 028818 61 EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLS-KENEALTNTVRKLQRDVSKLE 116 (203)
Q Consensus 61 EKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~-~E~~~La~TvKkL~rDvaKLE 116 (203)
+|...|.+++..+..++.-|. +-.-|...+- .++..+...|+....++.+|+
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~----qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk 74 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLK----QMELEVRSLPPSERNQYKSKLRSYRSELKKLK 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666655554 3222333332 677778888888887777654
No 357
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=64.11 E-value=95 Score=32.09 Aligned_cols=80 Identities=21% Similarity=0.282 Sum_probs=51.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (203)
++...+++|+.|...+.+.+..=-.++.++...+..|...+- ++|.++......+..|.+-+....+.|.-++.
T Consensus 535 ~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e--- 611 (698)
T KOG0978|consen 535 GLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELE--- 611 (698)
T ss_pred HhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 556666677777776666666666666666666666666555 66667777777777776666666666665443
Q ss_pred HHHHHH
Q 028818 117 VFRKTL 122 (203)
Q Consensus 117 ~FKk~L 122 (203)
.||+.|
T Consensus 612 ~L~~kl 617 (698)
T KOG0978|consen 612 RLKRKL 617 (698)
T ss_pred HHHHHH
Confidence 344444
No 358
>PHA03161 hypothetical protein; Provisional
Probab=64.03 E-value=67 Score=27.29 Aligned_cols=9 Identities=44% Similarity=0.475 Sum_probs=5.0
Q ss_pred hHHHHHHHH
Q 028818 29 QLDVARKIT 37 (203)
Q Consensus 29 QLdlarkIt 37 (203)
||+-+++-.
T Consensus 39 Qf~~t~~~l 47 (150)
T PHA03161 39 QLDHTKKSL 47 (150)
T ss_pred HHHHHHHHH
Confidence 666665443
No 359
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=64.01 E-value=1.5e+02 Score=29.16 Aligned_cols=14 Identities=14% Similarity=0.292 Sum_probs=6.4
Q ss_pred HHHHHHHhhhHHHH
Q 028818 102 TNTVRKLQRDVSKL 115 (203)
Q Consensus 102 a~TvKkL~rDvaKL 115 (203)
-.++++..+.|..+
T Consensus 146 ~e~l~~f~~~v~~~ 159 (475)
T PRK10361 146 REQLDGFRRQVQDS 159 (475)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 360
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=63.74 E-value=55 Score=23.87 Aligned_cols=11 Identities=27% Similarity=0.431 Sum_probs=4.1
Q ss_pred HHHHhhhHHHH
Q 028818 105 VRKLQRDVSKL 115 (203)
Q Consensus 105 vKkL~rDvaKL 115 (203)
.+.|+.++++|
T Consensus 81 ~~~l~~~l~~l 91 (127)
T smart00502 81 LESLTQKQEKL 91 (127)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 361
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=63.68 E-value=1.1e+02 Score=32.23 Aligned_cols=29 Identities=17% Similarity=0.158 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 028818 99 EALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (203)
Q Consensus 99 ~~La~TvKkL~rDvaKLE~FKk~LmqSLq 127 (203)
..+.++..+-|+=...|+.|||+|-+...
T Consensus 209 kermaAle~kn~L~~e~~s~kk~l~~~~~ 237 (916)
T KOG0249|consen 209 KERMAALEDKNRLEQELESVKKQLEEMRH 237 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555666667776665433
No 362
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=63.61 E-value=83 Score=27.66 Aligned_cols=18 Identities=39% Similarity=0.471 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028818 60 AEKDSRIAELQSQIESIY 77 (203)
Q Consensus 60 aEKd~~i~~Lq~r~s~Le 77 (203)
.+|++.|..+++++..++
T Consensus 103 ~~kd~~i~~~~~~l~~~~ 120 (196)
T PF15272_consen 103 IEKDREIRTLQDELLSLE 120 (196)
T ss_pred HHhHHHHHHHHHHHHHHH
Confidence 466666666666654333
No 363
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=63.45 E-value=57 Score=35.36 Aligned_cols=48 Identities=17% Similarity=0.325 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028818 69 LQSQIESIYSSLS------DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (203)
Q Consensus 69 Lq~r~s~Le~~L~------~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (203)
++.-+..|..+|+ ++.....++-.+|.+..-.|-+.+..|.+.++.++
T Consensus 453 ~q~eve~l~~~l~~l~~~~~~~e~l~q~~~~l~~~~~~lk~~~~~l~a~~~~~~ 506 (1174)
T KOG0933|consen 453 LQNEVEKLKKRLQSLGYKIGQEEALKQRRAKLHEDIGRLKDELDRLLARLANYE 506 (1174)
T ss_pred HHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 3344444444444 34444444444444444444444444444444433
No 364
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=63.44 E-value=56 Score=23.89 Aligned_cols=64 Identities=22% Similarity=0.311 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028818 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (203)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (203)
..+|+.-+.+=.+.+..+++++..+-.+.. .......++.+.-.+.-+.+...|+.+..-|..|
T Consensus 21 l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~l 87 (90)
T PF06103_consen 21 LKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSEL 87 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344555555555556666666555555554 2333334444444444455555555555554443
No 365
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=63.22 E-value=7.2 Score=32.67 Aligned_cols=75 Identities=19% Similarity=0.231 Sum_probs=18.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 028818 36 ITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (203)
Q Consensus 36 Its~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (203)
=+-+++...++.|+.+-.+|+.++.-=.+...-|+.++..-...|+ .+.++...|-.|++-|...+-+..-|+..
T Consensus 8 q~~~~l~~~L~~l~~erqkl~~qv~rL~qEN~~Lr~el~~tq~~lq----~se~~~~~Lpee~~~Lqfl~~~~r~d~~~ 82 (181)
T PF09311_consen 8 QVMRALQQHLQSLEAERQKLRAQVRRLCQENDWLRGELANTQQKLQ----ESEQEVAQLPEEVKHLQFLVSIKREDLIE 82 (181)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHT---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhhhhcCcchHHHHHHHHHhccccccc
Confidence 3677888999999999888888777666666666666665555444 77777778888777777766666555433
No 366
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=63.10 E-value=55 Score=26.19 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028818 83 KLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (203)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (203)
.+....+....|.+||..|.---..|.+-++++
T Consensus 23 el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 23 ELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334666677777788877777777777666655
No 367
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=62.86 E-value=1.6e+02 Score=28.91 Aligned_cols=75 Identities=24% Similarity=0.295 Sum_probs=35.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhH
Q 028818 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIY--------SSLSDKLGQAQADKERLSKENEA----LTNTVRKLQRDV 112 (203)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le--------~~L~~rL~~a~ee~~kL~~E~~~----La~TvKkL~rDv 112 (203)
+.+||.| ..||.....|+..-.+-+.|...+. .+|-.| ...+.+...|.+|-.. |++.-..+.=+-
T Consensus 306 rQKle~e-~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEK-aaLrkerd~L~keLeekkreleql~~q~~v~~ 383 (442)
T PF06637_consen 306 RQKLEAE-QGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEK-AALRKERDSLAKELEEKKRELEQLKMQLAVKT 383 (442)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445554 3455555555555555555554442 222233 2334444455554444 444444444444
Q ss_pred HHHHHHHHH
Q 028818 113 SKLEVFRKT 121 (203)
Q Consensus 113 aKLE~FKk~ 121 (203)
+-|++-=|+
T Consensus 384 saLdtCika 392 (442)
T PF06637_consen 384 SALDTCIKA 392 (442)
T ss_pred hHHHHHHHh
Confidence 556665444
No 368
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=62.82 E-value=33 Score=27.77 Aligned_cols=54 Identities=22% Similarity=0.300 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHH
Q 028818 64 SRIAELQSQIESIYSSLSDKLGQAQADKE-RLSKENEALTNTVRKLQRDVSKLEV 117 (203)
Q Consensus 64 ~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~-kL~~E~~~La~TvKkL~rDvaKLE~ 117 (203)
..+.+++..-..++...+.|+...+++-. -=++|-+.|...|..|.|.|++||+
T Consensus 50 dl~~q~k~~~~e~e~K~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Len 104 (108)
T COG3937 50 DLLRQAKEAQGELEEKIPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLEN 104 (108)
T ss_pred HHHHHHHHHhhhHHHhhhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 34444454555555555566666665544 1123558888889999999999986
No 369
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=62.74 E-value=1.4e+02 Score=28.11 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=19.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHH
Q 028818 35 KITSIAISTRVSDLESEHSALRSQL 59 (203)
Q Consensus 35 kIts~A~atRVs~LE~E~~~LR~~L 59 (203)
|+.--.+..|+..|+.|+..||..-
T Consensus 40 k~El~~ek~~~~~L~~e~~~lr~~s 64 (310)
T PF09755_consen 40 KRELETEKARCKHLQEENRALREAS 64 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455578889999999999888653
No 370
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=62.36 E-value=43 Score=26.09 Aligned_cols=33 Identities=12% Similarity=0.158 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028818 84 LGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (203)
Q Consensus 84 L~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (203)
..+..++.+.+.+|++.|.+.-..|.++|..|.
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555555555555555555555555554
No 371
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=62.34 E-value=49 Score=31.65 Aligned_cols=31 Identities=26% Similarity=0.434 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028818 87 AQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (203)
Q Consensus 87 a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (203)
-.++..||..++..|..-+-+++|-.++.+.
T Consensus 375 h~eEk~kle~~rr~Leee~~~f~~rk~~~~~ 405 (406)
T KOG3859|consen 375 HQEEKKKLEEKRKQLEEEVNAFQRRKTAAEL 405 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4577889999999999999999888877664
No 372
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=62.24 E-value=20 Score=26.98 Aligned_cols=64 Identities=19% Similarity=0.354 Sum_probs=47.3
Q ss_pred CCCChHHHHhhCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 11 TFDLPEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (203)
Q Consensus 11 ~f~lp~eil~vLP~DP~EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~L 76 (203)
.+.-++.|+-.|-.+=|-...+.. +-.=+..|+..|+..+..++.++.+...+|..++..+..+
T Consensus 54 ~i~~~~~vlV~lG~~~~vE~s~~e--A~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 117 (120)
T PF02996_consen 54 KIPDTDKVLVSLGAGYYVEMSLEE--AIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQL 117 (120)
T ss_dssp E-SSTTEEEEEEETTEEEEEEHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred EeCCCCEEEEEeeCCeEEEecHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566777777777777666665 3344678899999999999999999888888888776654
No 373
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=62.06 E-value=42 Score=34.13 Aligned_cols=89 Identities=15% Similarity=0.200 Sum_probs=59.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHH
Q 028818 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------------------------DKLGQAQADKER 93 (203)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~------------------------~rL~~a~ee~~k 93 (203)
...|+.|+.-+|-||+.|.....-|.+.|+.|+.+-..|+..+. .||-.-..|+=-
T Consensus 592 ekG~Aeki~~me~Ei~glq~DkQ~ar~qIh~Le~~Reelsk~V~DLtssaQgakKAVhdaK~ElA~~Y~klLagiKEKwv 671 (790)
T PF07794_consen 592 EKGYAEKIGFMEMEIGGLQADKQTARNQIHRLEQRREELSKRVMDLTSSAQGAKKAVHDAKVELAAAYSKLLAGIKEKWV 671 (790)
T ss_pred hhhhHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34789999999999999999999999999998887776665543 111111122212
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 028818 94 LSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (203)
Q Consensus 94 L~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSL 126 (203)
-.||--.|..+.-.+.-.++-++..-|+-+++-
T Consensus 672 ~KKe~t~le~qAaEvesNlaLidqi~kaaIdlt 704 (790)
T PF07794_consen 672 AKKEYTVLEGQAAEVESNLALIDQITKAAIDLT 704 (790)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 234445566666666666666766666666654
No 374
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=61.87 E-value=1.2e+02 Score=26.97 Aligned_cols=52 Identities=21% Similarity=0.298 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 028818 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTN 103 (203)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~ 103 (203)
+++||..=+||-..+-+--.-+....+.|| .-++...+.|.+|++||..|-.
T Consensus 22 ~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRd 76 (195)
T PF10226_consen 22 VRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRD 76 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444554444444443333222333333333 3334677788888888887753
No 375
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=61.83 E-value=1.3e+02 Score=29.25 Aligned_cols=39 Identities=18% Similarity=0.341 Sum_probs=20.8
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 43 tRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
..|..+..|+...+..|......+..|+.-+..|..+|.
T Consensus 281 ~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe 319 (522)
T PF05701_consen 281 SSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELE 319 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555555555555555555555555555555555554
No 376
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=61.79 E-value=1.5e+02 Score=28.19 Aligned_cols=27 Identities=19% Similarity=0.374 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhhhHHHHHH-HHHHHHhh
Q 028818 99 EALTNTVRKLQRDVSKLEV-FRKTLVQS 125 (203)
Q Consensus 99 ~~La~TvKkL~rDvaKLE~-FKk~LmqS 125 (203)
..+...++.|...+.+||. ++..||-+
T Consensus 78 ~~a~~e~~~l~~~~~~~e~~l~~~ll~~ 105 (360)
T TIGR00019 78 EMAKEELEELEEKIEELEEQLKVLLLPK 105 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3445677778888888875 55555544
No 377
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=61.78 E-value=79 Score=25.04 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028818 84 LGQAQADKERLSKENEALTNT 104 (203)
Q Consensus 84 L~~a~ee~~kL~~E~~~La~T 104 (203)
|....++...+..+...|...
T Consensus 61 L~~lr~e~~~~~~~~~~l~~~ 81 (132)
T PF07926_consen 61 LQQLREELQELQQEINELKAE 81 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444443333333
No 378
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=61.75 E-value=1e+02 Score=28.76 Aligned_cols=65 Identities=15% Similarity=0.376 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028818 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (203)
Q Consensus 47 ~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (203)
.|..++..+|.+-.++.+...++.+++.++-.... ..+++..+|-.+++.+-..+-.|.+++.+|
T Consensus 31 El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rd----eineev~elK~kR~ein~kl~eL~~~~~~l 95 (294)
T COG1340 31 ELRKEASELAEKRDELNAKVRELREKAQELREERD----EINEEVQELKEKRDEINAKLQELRKEYREL 95 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 379
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=61.66 E-value=1.3e+02 Score=28.85 Aligned_cols=88 Identities=33% Similarity=0.439 Sum_probs=55.9
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH---H---------HHH
Q 028818 25 DPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDS-------RIAELQSQIESIYSSLS---D---------KLG 85 (203)
Q Consensus 25 DP~EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~-------~i~~Lq~r~s~Le~~L~---~---------rL~ 85 (203)
||-+|=+|+ .+=|++||.|.-.+-.+|+--.. .|..|..|+.+|..+|. . .|.
T Consensus 213 dp~~qaevq--------~~Lvs~Le~eL~~iqaqL~tvks~m~~~nPqi~~LkarieSlrkql~qe~q~isag~~~~sl~ 284 (372)
T COG3524 213 DPKAQAEVQ--------MSLVSKLEDELIVIQAQLDTVKSVMNPENPQIPGLKARIESLRKQLLQEKQAISAGGSSQSLS 284 (372)
T ss_pred ChhhhhHHH--------HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCCCccchh
Confidence 677777776 35678889888888888774333 35788889988888876 1 233
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHhhhHHHHHHHHHHH
Q 028818 86 QAQADKERLSKEN----EALTNTVRKLQRDVSKLEVFRKTL 122 (203)
Q Consensus 86 ~a~ee~~kL~~E~----~~La~TvKkL~rDvaKLE~FKk~L 122 (203)
.-..+-+.|.=|| ..++..++.|. -||.|+.++++
T Consensus 285 ~qaAefq~l~lE~~fAekay~AAl~SlE--sArieAdrqq~ 323 (372)
T COG3524 285 NQAAEFQRLYLENTFAEKAYAAALTSLE--SARIEADRQQL 323 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhhhhhh
Confidence 3333334444444 24555555553 36777777765
No 380
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=61.54 E-value=53 Score=23.20 Aligned_cols=27 Identities=22% Similarity=0.430 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 48 LESEHSALRSQLAEKDSRIAELQSQIE 74 (203)
Q Consensus 48 LE~E~~~LR~~LaEKd~~i~~Lq~r~s 74 (203)
++.|+.+|..++..=...|..++.+++
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~ 28 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLS 28 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 466677776666655555555555554
No 381
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=61.48 E-value=1.5e+02 Score=32.93 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 028818 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQS 125 (203)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqS 125 (203)
....++.+|.+|...+.....+++-.+.|+...+|+|-..
T Consensus 512 ~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~ 551 (1317)
T KOG0612|consen 512 KLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEA 551 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 3333334444444444444444444455556666666543
No 382
>PRK00106 hypothetical protein; Provisional
Probab=61.47 E-value=1.8e+02 Score=29.03 Aligned_cols=41 Identities=12% Similarity=0.289 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 028818 87 AQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (203)
Q Consensus 87 a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq 127 (203)
..++..+|.+....|...-+.|.+--..++.++....+-|.
T Consensus 120 LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le 160 (535)
T PRK00106 120 LSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELE 160 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444555555544443
No 383
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=61.27 E-value=29 Score=26.32 Aligned_cols=34 Identities=24% Similarity=0.378 Sum_probs=15.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQI 73 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~ 73 (203)
.+..|+..|+.++.+|..++.+....+.+++.++
T Consensus 67 ~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l 100 (105)
T cd00632 67 ELKERLETIELRIKRLERQEEDLQEKLKELQEKI 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444433
No 384
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=61.01 E-value=1.5e+02 Score=27.90 Aligned_cols=15 Identities=40% Similarity=0.530 Sum_probs=6.4
Q ss_pred HHhhhhhHHHHHHHH
Q 028818 42 STRVSDLESEHSALR 56 (203)
Q Consensus 42 atRVs~LE~E~~~LR 56 (203)
.+|--.||++..+|+
T Consensus 58 etrnrdl~t~nqrl~ 72 (333)
T KOG1853|consen 58 ETRNRDLETRNQRLT 72 (333)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
No 385
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=60.95 E-value=1.4e+02 Score=30.92 Aligned_cols=18 Identities=28% Similarity=0.267 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028818 90 DKERLSKENEALTNTVRK 107 (203)
Q Consensus 90 e~~kL~~E~~~La~TvKk 107 (203)
....|.+|...+...+..
T Consensus 420 ri~~LE~ELr~l~~~A~E 437 (717)
T PF09730_consen 420 RISELEKELRALSKLAGE 437 (717)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 444444444444444443
No 386
>PRK10869 recombination and repair protein; Provisional
Probab=60.89 E-value=87 Score=30.69 Aligned_cols=46 Identities=13% Similarity=0.229 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-----HHHHHHHHHhhccc
Q 028818 83 KLGQAQADKERLSKENEALTNTVRKLQRDVSK-----LEVFRKTLVQSLKD 128 (203)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaK-----LE~FKk~LmqSLq~ 128 (203)
.|....+...+|.++.+.+...++++...+++ .+.|.+.+..-|++
T Consensus 335 ~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~v~~~L~~ 385 (553)
T PRK10869 335 QLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQLITESMHE 385 (553)
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666777888888888888888877773 56777777665554
No 387
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=60.75 E-value=8.7 Score=34.49 Aligned_cols=24 Identities=42% Similarity=0.488 Sum_probs=19.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHH
Q 028818 37 TSIAISTRVSDLESEHSALRSQLA 60 (203)
Q Consensus 37 ts~A~atRVs~LE~E~~~LR~~La 60 (203)
..-|-..|++.||.|..+||.|+|
T Consensus 116 ~~~~AlqKIsALEdELs~LRaQIA 139 (253)
T PF05308_consen 116 ANEAALQKISALEDELSRLRAQIA 139 (253)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666899999999999999875
No 388
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.66 E-value=74 Score=24.37 Aligned_cols=44 Identities=20% Similarity=0.358 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 65 RIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKL 108 (203)
Q Consensus 65 ~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvKkL 108 (203)
.|.+|.++-++|..+.+ ..-.....+|++|..|-..-...++.|
T Consensus 26 EieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 26 EIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555 111123344555555555555555444
No 389
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=60.64 E-value=26 Score=36.49 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 48 LESEHSALRSQLAEKDSRIAELQSQIE 74 (203)
Q Consensus 48 LE~E~~~LR~~LaEKd~~i~~Lq~r~s 74 (203)
+++|+.+|..++..-...|..++.+++
T Consensus 927 ~~~E~~rL~K~l~kl~~ei~~~~~kL~ 953 (995)
T PTZ00419 927 LKKELAKLEKKLAKLQKSLESYLKKIS 953 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345555555444444444444444443
No 390
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=60.61 E-value=1.2e+02 Score=26.85 Aligned_cols=71 Identities=23% Similarity=0.283 Sum_probs=40.5
Q ss_pred CCCChHHHHhhCCCCc--hhhH-------HHHHHHHHHHHHHhhh----hhH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 11 TFDLPEEVLQVLPSDP--FEQL-------DVARKITSIAISTRVS----DLE---SEHSALRSQLAEKDSRIAELQSQIE 74 (203)
Q Consensus 11 ~f~lp~eil~vLP~DP--~EQL-------dlarkIts~A~atRVs----~LE---~E~~~LR~~LaEKd~~i~~Lq~r~s 74 (203)
+|++-+-.|.-||.+. .+++ .-.-.+++.-+...|+ ..- .++..|+.+|.+=-..+..+++++.
T Consensus 12 ~FD~~~~~L~~l~~~~~~~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L~ 91 (291)
T PF10475_consen 12 DFDPVRYELEKLPEDELDLEDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVICKNLRRNLK 91 (291)
T ss_pred CCCchHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8998888899999983 3332 2222222322222221 111 1255666666666677777777777
Q ss_pred HHHHHHH
Q 028818 75 SIYSSLS 81 (203)
Q Consensus 75 ~Le~~L~ 81 (203)
.++..+.
T Consensus 92 ~~~~~~~ 98 (291)
T PF10475_consen 92 SADENLT 98 (291)
T ss_pred HHHHHhH
Confidence 6666654
No 391
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=60.57 E-value=98 Score=33.69 Aligned_cols=52 Identities=21% Similarity=0.304 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 30 LDVARKITSIAIST---RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 30 LdlarkIts~A~at---RVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
|+.-+|+..+.+-. |+..||+.+..|+.++.+.+..+..|..+++++.+.+.
T Consensus 386 ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~ 440 (1141)
T KOG0018|consen 386 LNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYE 440 (1141)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777776654 78889999999999998889999999999998888876
No 392
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=60.51 E-value=1.4e+02 Score=29.02 Aligned_cols=83 Identities=20% Similarity=0.343 Sum_probs=53.7
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 028818 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (203)
Q Consensus 42 atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~ 121 (203)
..++-.|+.+.+++... ..+|+.+.+.+-.++...++.-.++...|..|...|...++.+...+..++.=-.+
T Consensus 28 ~~~~~~ld~~~r~~~~~-------~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~ 100 (429)
T COG0172 28 VDKLLELDEERRKLLRE-------LEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDT 100 (429)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33444444444444443 44555555555555542222323356789999999999999999999999888888
Q ss_pred HHhhcccccC
Q 028818 122 LVQSLKDDED 131 (203)
Q Consensus 122 LmqSLq~d~~ 131 (203)
++.+|.+-..
T Consensus 101 ~ll~ipNi~~ 110 (429)
T COG0172 101 LLLTIPNIPH 110 (429)
T ss_pred HHHhCCCCCc
Confidence 8988876543
No 393
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=60.44 E-value=1e+02 Score=30.11 Aligned_cols=75 Identities=24% Similarity=0.406 Sum_probs=53.8
Q ss_pred Cchh--hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 25 DPFE--QLDVARKITSIAISTRVSDLESEHSALRSQLA-----EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKE 97 (203)
Q Consensus 25 DP~E--QLdlarkIts~A~atRVs~LE~E~~~LR~~La-----EKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E 97 (203)
-||| =|++|.--.-..+.+|+..||-++-.+=+.|. ++=+++..+.++++.|..-.+ ..+|+...|.++
T Consensus 174 lPFEFrALE~aLe~~~s~L~~~~~~Le~~~~~~LdeLt~~is~~nL~~lr~~k~~Lt~l~~rvq----kvRDeLe~LLdd 249 (414)
T KOG2662|consen 174 LPFEFRALEVALEAACSFLDSRLSELETEAYPLLDELTNKISTLNLERLRILKKRLTELTSRVQ----KVRDELEELLDD 249 (414)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHHhcC
Confidence 3555 57888877778889999999988766555553 556667777777777766555 777777777777
Q ss_pred HHHHHH
Q 028818 98 NEALTN 103 (203)
Q Consensus 98 ~~~La~ 103 (203)
.+.++.
T Consensus 250 d~Dma~ 255 (414)
T KOG2662|consen 250 DDDMAE 255 (414)
T ss_pred hHHHHH
Confidence 776665
No 394
>PF14992 TMCO5: TMCO5 family
Probab=60.44 E-value=38 Score=31.29 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=17.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (203)
Q Consensus 44 RVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~ 78 (203)
.+.+|-..-..|=+++.+|+..|..|++.++..+.
T Consensus 12 d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~ 46 (280)
T PF14992_consen 12 DEQRLDEANQSLLQKIQEKEGAIQSLEREITKMDH 46 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 33444444445555555555555555554444433
No 395
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=60.39 E-value=1.7e+02 Score=31.69 Aligned_cols=12 Identities=33% Similarity=0.440 Sum_probs=6.5
Q ss_pred HHHHhhhhhHHH
Q 028818 40 AISTRVSDLESE 51 (203)
Q Consensus 40 A~atRVs~LE~E 51 (203)
++..++..+|.|
T Consensus 184 ~l~~~~~~l~~~ 195 (1109)
T PRK10929 184 ALKALVDELELA 195 (1109)
T ss_pred HHHHHHHHHHHH
Confidence 455555555554
No 396
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=60.38 E-value=1e+02 Score=25.86 Aligned_cols=105 Identities=17% Similarity=0.227 Sum_probs=49.3
Q ss_pred hHHHHhhCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHH
Q 028818 15 PEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRI------------AELQSQIESIYSSLSD 82 (203)
Q Consensus 15 p~eil~vLP~DP~EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i------------~~Lq~r~s~Le~~L~~ 82 (203)
|..+|--.=.|--++|.=+++-+..+++.+ ..||.++..+.....+-.... ...-.+...++..+
T Consensus 24 P~~~l~q~ird~e~~l~~a~~~~a~~~a~~-~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~-- 100 (221)
T PF04012_consen 24 PEKMLEQAIRDMEEQLRKARQALARVMANQ-KRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQA-- 100 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH--
Confidence 555555555555666666665555444433 355555555555555333222 11111222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 028818 83 KLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (203)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~Lmq 124 (203)
....+....+...-..|...+++|...+..+++=+..|+.
T Consensus 101 --~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~a 140 (221)
T PF04012_consen 101 --ERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKA 140 (221)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333344444444455555555555555555555555443
No 397
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=60.22 E-value=62 Score=27.15 Aligned_cols=54 Identities=22% Similarity=0.300 Sum_probs=43.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKEN 98 (203)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~ 98 (203)
|-.+|....+-|++|..-+..|..++.|..+.+..|.+|-....+-..++.++.
T Consensus 3 ve~a~rny~~a~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~eae 56 (136)
T PF11570_consen 3 VEVAERNYEAARAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKEAE 56 (136)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 345666777889999999999999999999999999877777777777776643
No 398
>COG1777 Predicted transcriptional regulators [Transcription]
Probab=60.14 E-value=70 Score=28.68 Aligned_cols=70 Identities=27% Similarity=0.317 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 028818 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLV 123 (203)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~Lm 123 (203)
+..+-..|.++.+++.+|..+-..|+..+. +|++...++..-.-.++.-|..-.+...++|+ |+++++.+
T Consensus 120 ~~~l~srl~~~~~~~e~l~~~~~~L~~~~~el~~rik~~ied~~~~~~~~~vl~~l~~n~~~~v~--E~~r~~~~ 192 (217)
T COG1777 120 ISELISRLLEINREIEELSRAQTELQKQLNELMDRIKEEIEDKDGDMTERIVLEYLLKNGAADVE--ETSRRTVL 192 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhHHH--HHHhccch
Confidence 455556667777777777777777777666 78888888887777777777777777777776 45555443
No 399
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=60.02 E-value=1.4e+02 Score=27.21 Aligned_cols=7 Identities=43% Similarity=0.876 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 028818 68 ELQSQIE 74 (203)
Q Consensus 68 ~Lq~r~s 74 (203)
+|++++.
T Consensus 38 ~l~~~~~ 44 (378)
T TIGR01554 38 ELETDVE 44 (378)
T ss_pred HHHHHHH
Confidence 3333333
No 400
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=59.94 E-value=93 Score=31.85 Aligned_cols=71 Identities=34% Similarity=0.417 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHHH
Q 028818 52 HSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV---SKLEVFRKTL 122 (203)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv---aKLE~FKk~L 122 (203)
+..+-..|.-||.+|..|-.-|..++.+++.-+...-..+..|.++.......+..|.+.+ +--|..|+-|
T Consensus 280 i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~EL 353 (629)
T KOG0963|consen 280 IDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSRSDYEEIKKEL 353 (629)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHH
Confidence 6677788889999999999999999999982222222334444444444444443333322 3445566643
No 401
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=59.83 E-value=78 Score=26.23 Aligned_cols=50 Identities=20% Similarity=0.308 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 52 HSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALT 102 (203)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La 102 (203)
+...+.++.+....+..++.++...+.+|- .|+....++..|+.+-..|.
T Consensus 15 i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~-~Lk~~~~d~eeLk~~i~~lq 64 (155)
T PF06810_consen 15 IEAPKAKVDKVKEERDNLKTQLKEADKQIK-DLKKSAKDNEELKKQIEELQ 64 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccCCHHHHHHHHHHHH
Confidence 444555566556666666666666666553 33333333333333333333
No 402
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=59.75 E-value=1.2e+02 Score=26.62 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 49 ESEHSALRSQLAEKDSRIAELQSQIES 75 (203)
Q Consensus 49 E~E~~~LR~~LaEKd~~i~~Lq~r~s~ 75 (203)
+-|..+||.+|++=+..+...++..+.
T Consensus 95 dwEevrLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 95 DWEEVRLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 347888999999888888888877765
No 403
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=59.65 E-value=1.8e+02 Score=29.66 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 028818 66 IAELQSQIESIYSSLS 81 (203)
Q Consensus 66 i~~Lq~r~s~Le~~L~ 81 (203)
|..|+.++..|...+.
T Consensus 243 i~~l~~~l~~l~~~~~ 258 (670)
T KOG0239|consen 243 IQALQQELEELKAELK 258 (670)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444444
No 404
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=59.53 E-value=1.5e+02 Score=30.36 Aligned_cols=51 Identities=22% Similarity=0.326 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 52 HSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALT 102 (203)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La 102 (203)
+..|++++.+..+...+|...+..+...++.-++.....+..|...+..|.
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~ 293 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLV 293 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555333333333444444444433
No 405
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=59.49 E-value=1.1e+02 Score=28.57 Aligned_cols=30 Identities=27% Similarity=0.328 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
+..|...|+.|-+.....|+.|+.|-.++.
T Consensus 215 ia~LseELa~k~Ee~~rQQEEIt~Llsqiv 244 (306)
T PF04849_consen 215 IASLSEELARKTEENRRQQEEITSLLSQIV 244 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666666665555
No 406
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=59.34 E-value=87 Score=24.71 Aligned_cols=41 Identities=29% Similarity=0.361 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHh
Q 028818 84 LGQAQADKERLSKENEALTNTVRKLQR--------DVSKLEVFRKTLVQ 124 (203)
Q Consensus 84 L~~a~ee~~kL~~E~~~La~TvKkL~r--------DvaKLE~FKk~Lmq 124 (203)
-.++.-.+.+|++||.++..-.+-..| |-.-++.|+-.|++
T Consensus 33 A~EAMaMI~RLQ~EKAa~~mEA~Qy~Rm~EEk~~yD~e~ie~L~~~l~~ 81 (94)
T PF04576_consen 33 ASEAMAMILRLQEEKAAVEMEARQYQRMAEEKAEYDQEAIESLKDILYK 81 (94)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 347778889999999998877765544 44556666555544
No 407
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=59.09 E-value=1.8e+02 Score=31.51 Aligned_cols=76 Identities=20% Similarity=0.292 Sum_probs=34.6
Q ss_pred hCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 21 VLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRI-------AELQSQIESIYSSLSDKLGQAQADKER 93 (203)
Q Consensus 21 vLP~DP~EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i-------~~Lq~r~s~Le~~L~~rL~~a~ee~~k 93 (203)
.||.+-|-|..-=+ ++-+-++.+||.|+..++.++.+-.+.. ..|.++...++..|+ ....+...
T Consensus 430 yisee~y~~~e~e~----~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~----~~~~el~~ 501 (1041)
T KOG0243|consen 430 YISEERYTQEEKEK----KEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQ----NKNKELES 501 (1041)
T ss_pred EechHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 35666665553322 1223344444444444444444333333 255555555555554 44444444
Q ss_pred HHHHHHHHHHH
Q 028818 94 LSKENEALTNT 104 (203)
Q Consensus 94 L~~E~~~La~T 104 (203)
+.+|...+..+
T Consensus 502 ~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 502 LKEELQQAKAT 512 (1041)
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 408
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=58.92 E-value=1.3e+02 Score=26.58 Aligned_cols=25 Identities=12% Similarity=0.272 Sum_probs=12.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhc
Q 028818 102 TNTVRKLQRDVSKLEVFRKTLVQSL 126 (203)
Q Consensus 102 a~TvKkL~rDvaKLE~FKk~LmqSL 126 (203)
...+..|...++.|++-|..|+...
T Consensus 119 ~~~~~~Le~Ki~e~~~~~~~l~ar~ 143 (225)
T COG1842 119 KKQLAALEQKIAELRAKKEALKARK 143 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555556666665543
No 409
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=58.85 E-value=1.6e+02 Score=27.55 Aligned_cols=80 Identities=15% Similarity=0.283 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028818 33 ARKITSIAISTRVSDLESEHSALRSQLA-EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRD 111 (203)
Q Consensus 33 arkIts~A~atRVs~LE~E~~~LR~~La-EKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rD 111 (203)
......+|-.-|. ....||..+. =-...+.+|+.+....+.+|..|+.+..+-..+|..+.......+..+.++
T Consensus 206 s~~ni~~a~~e~~-----~S~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~ 280 (384)
T PF03148_consen 206 SNENIQRAEKERQ-----SSAQLREDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKN 280 (384)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3444555555444 3466777776 455667788888888888888777777777777777766666666666666
Q ss_pred HHHHHH
Q 028818 112 VSKLEV 117 (203)
Q Consensus 112 vaKLE~ 117 (203)
+..|+.
T Consensus 281 i~~L~~ 286 (384)
T PF03148_consen 281 IEDLEK 286 (384)
T ss_pred HHHHHH
Confidence 655554
No 410
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=58.81 E-value=78 Score=27.82 Aligned_cols=47 Identities=23% Similarity=0.296 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028818 63 DSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (203)
Q Consensus 63 d~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (203)
.....+|+.+++.|+.+|.++...+...+.++.++...+.-+.+.|.
T Consensus 81 ~~~~~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l~~~~~r~~el~ 127 (196)
T PF15272_consen 81 SKQSEDLQSRISNLEKQLVDQMIEKDREIRTLQDELLSLELRNKELQ 127 (196)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45557788999999999988888888999999999999998888887
No 411
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=58.72 E-value=86 Score=24.63 Aligned_cols=18 Identities=11% Similarity=0.253 Sum_probs=7.0
Q ss_pred HHHhhhhhHHHHHHHHHH
Q 028818 41 ISTRVSDLESEHSALRSQ 58 (203)
Q Consensus 41 ~atRVs~LE~E~~~LR~~ 58 (203)
+..++..++.|+..+.++
T Consensus 48 ~~~~l~~~~~el~~~~~~ 65 (158)
T PF03938_consen 48 LQKELQAKQKELQKLQQK 65 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333444444433333
No 412
>PRK09737 EcoKI restriction-modification system protein HsdS; Provisional
Probab=58.70 E-value=25 Score=31.64 Aligned_cols=39 Identities=10% Similarity=0.359 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHH---HHHHHH-HhhhHHHHHHHHHHHHhhc
Q 028818 88 QADKERLSKENEAL---TNTVRK-LQRDVSKLEVFRKTLVQSL 126 (203)
Q Consensus 88 ~ee~~kL~~E~~~L---a~TvKk-L~rDvaKLE~FKk~LmqSL 126 (203)
.++|.+..+.-+.+ .+.+.+ +++.+++|+.+|+.|||.+
T Consensus 372 l~EQ~kI~~~l~~l~~~~d~i~~~~~~~l~~L~~lKqslLqk~ 414 (461)
T PRK09737 372 LEEQAEIVRRVEQLFAYADTIEKQVNNALARVNNLTQSILAKA 414 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566655544444 444544 5778999999999999965
No 413
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=58.56 E-value=1e+02 Score=31.31 Aligned_cols=86 Identities=19% Similarity=0.264 Sum_probs=42.4
Q ss_pred hHHHHhhCCCCchh----hHHHHHHHHHH---------HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 15 PEEVLQVLPSDPFE----QLDVARKITSI---------AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 15 p~eil~vLP~DP~E----QLdlarkIts~---------A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
|+.|-.++=.+|.- .=.||.++-.. .+..|...|+.++.++.. .|.++++|+..+|..|.
T Consensus 559 p~~V~~lF~~~~~g~~~~~~Gla~~l~~~l~~~t~~~G~i~~r~~~l~~~i~~l~~-------~i~~~e~rl~~~e~rl~ 631 (661)
T PRK06664 559 PDSVRELFAFDSNGDAVMDNGVAKMLLEYLSPYTQAGGIIYNKVKGLDERIADNNK-------KIEEYEKKLESKERKLK 631 (661)
T ss_pred HHHHHHHhcCCCcccccccCcHHHHHHHHHHHHHcCCCceehHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 55555555433221 22556655443 344555555555555444 44445555555555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 82 DKLGQAQADKERLSKENEALTNTVRK 107 (203)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~TvKk 107 (203)
.+....+.-..+|+..-+.|.+..+.
T Consensus 632 ~QFtaME~~msqmnsqss~L~~~~~~ 657 (661)
T PRK06664 632 GKYLTMDQTVKKMKEQSNYLKNFNKS 657 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444455555555555555443
No 414
>PRK08724 fliD flagellar capping protein; Validated
Probab=58.44 E-value=1.2e+02 Score=31.16 Aligned_cols=54 Identities=19% Similarity=0.262 Sum_probs=23.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEAL 101 (203)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~L 101 (203)
|.+|...|+..+.+|- ..+..|++|+..+|..|..+....+.-..+|+..-+.|
T Consensus 615 I~~R~~sL~~~i~~l~-------dqi~~Le~Rle~~E~Ry~~QFtAMD~~msqMnsQ~s~L 668 (673)
T PRK08724 615 IRTREKSLREQNYRLN-------DDQVALDRRMESLEKRTHAKFAAMQDATGKMQGQLGGM 668 (673)
T ss_pred hhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555554443 33445555555555544433333333333443333333
No 415
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=58.38 E-value=49 Score=25.84 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028818 86 QAQADKERLSKENEALTNTVRKLQRD 111 (203)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rD 111 (203)
.+.+++.+|.++...+.+.+|+|.++
T Consensus 91 ~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 91 ELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555555555555555555443
No 416
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=58.07 E-value=1e+02 Score=25.08 Aligned_cols=72 Identities=18% Similarity=0.225 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 028818 47 DLESEHSALRSQLAE-KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (203)
Q Consensus 47 ~LE~E~~~LR~~LaE-Kd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (203)
.|+.++...+..-+. .+....-+...++.|..... ....+...|...+......+..+...+..|+..+..|
T Consensus 2 ~~~~e~~~~~~~~a~~~e~e~~~~~~~~~~l~~~~~----~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl 74 (136)
T PF04871_consen 2 ELKSELEEEKQLAAKILELETKLKSQAESSLEQENK----RLEAEEKELKEAEQAAEAELEELASEVKELEAEKEKL 74 (136)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 417
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=57.89 E-value=99 Score=24.92 Aligned_cols=71 Identities=17% Similarity=0.288 Sum_probs=43.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHH
Q 028818 42 STRVSDLESEHSALRSQLAEKDSR--IAELQSQIESIYSSLSDKLGQAQADK-ERLSKENEALTNTVRKLQRDVSKLE 116 (203)
Q Consensus 42 atRVs~LE~E~~~LR~~LaEKd~~--i~~Lq~r~s~Le~~L~~rL~~a~ee~-~kL~~E~~~La~TvKkL~rDvaKLE 116 (203)
-.=|-.|-.|+.+..+...+-++. ..++...+..|...|. .+...+ .++..++......+..+.+-++-||
T Consensus 66 P~tvLALLDElE~~~~~i~~~~~~~e~~~~a~~~~~l~~~Le----~ae~~~~~~~~~~~~~~e~~~~~~~~riaEle 139 (139)
T PF13935_consen 66 PATVLALLDELERAQQRIAELEQECENEDIALDVQKLRVELE----AAEKRIAAELAEQAEAYEGEIADYAKRIAELE 139 (139)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC
Confidence 344555666666655555555544 6666666666666555 343344 5666777777777777777666654
No 418
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=57.82 E-value=1.7e+02 Score=29.18 Aligned_cols=39 Identities=31% Similarity=0.377 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 028818 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (203)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq 127 (203)
++.|--++|..|-..|. .+|-+-+.|||.=||-|..-|-
T Consensus 187 e~V~lentlEQEqEalv---N~LwKrmdkLe~ekr~Lq~KlD 225 (552)
T KOG2129|consen 187 EAVQLENTLEQEQEALV---NSLWKRMDKLEQEKRYLQKKLD 225 (552)
T ss_pred HHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhc
Confidence 33444456666666664 4677788999999999999883
No 419
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=57.71 E-value=80 Score=23.79 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=14.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 37 TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQS 71 (203)
Q Consensus 37 ts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~ 71 (203)
....+......++.++..+...+.+-...+..|+.
T Consensus 82 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (120)
T PF11740_consen 82 AEEELEAARAELEQERAAAEAELAEAEAQAEELEA 116 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444433
No 420
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=57.70 E-value=2.4e+02 Score=29.39 Aligned_cols=25 Identities=20% Similarity=0.395 Sum_probs=16.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh
Q 028818 100 ALTNTVRKLQRDVSKLEVFRKTLVQ 124 (203)
Q Consensus 100 ~La~TvKkL~rDvaKLE~FKk~Lmq 124 (203)
.|....+...-.|..|+-+++.+++
T Consensus 238 ele~i~~~~~dqlqel~~l~~a~~q 262 (716)
T KOG4593|consen 238 ELEAINKNMKDQLQELEELERALSQ 262 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555667778888887776
No 421
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=57.67 E-value=2.7e+02 Score=29.88 Aligned_cols=50 Identities=20% Similarity=0.362 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccC
Q 028818 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDED 131 (203)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d~~ 131 (203)
..+..+..+..++.++++....+++.+.+.+.+++.=-..|-.-|....+
T Consensus 490 ~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~g 539 (1201)
T PF12128_consen 490 QAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKG 539 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 34446666667777778888888888888888877666666666654443
No 422
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=57.64 E-value=1.4e+02 Score=26.48 Aligned_cols=36 Identities=17% Similarity=0.325 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 028818 46 SDLESEHSALRSQLAEK-DSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 46 s~LE~E~~~LR~~LaEK-d~~i~~Lq~r~s~Le~~L~ 81 (203)
..+...+..++..|... .+.+...+.++..+...+.
T Consensus 146 ~~~~~~l~~~~~~l~~~~~~~l~~~~~~L~~l~~~l~ 182 (319)
T PF02601_consen 146 RELLQRLDELRQRLNRAMRNRLQRKRQRLNQLAKRLQ 182 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444322 2233333344444444443
No 423
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=57.59 E-value=1.8e+02 Score=27.94 Aligned_cols=88 Identities=23% Similarity=0.232 Sum_probs=47.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH---HHHHHHH----HHHHHHHHHH-HH
Q 028818 40 AISTRVSDLESEHSALRSQLA-----------EKDSRIAELQSQIESIYSSLS---DKLGQAQ----ADKERLSKEN-EA 100 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~La-----------EKd~~i~~Lq~r~s~Le~~L~---~rL~~a~----ee~~kL~~E~-~~ 100 (203)
.+......|+.++.+|+.++. |-.-...-|+++++.+..-.+ ..|++-+ ++.+=+..|| ..
T Consensus 223 eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRd 302 (395)
T PF10267_consen 223 EIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYERARD 302 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhH
Confidence 566777888888888887544 222333334444444443333 3333332 2222233333 34
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 028818 101 LTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (203)
Q Consensus 101 La~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (203)
+...+...+--|+||| ..++.|-.|-+
T Consensus 303 i~E~~Es~qtRisklE--~~~~Qq~~q~e 329 (395)
T PF10267_consen 303 IWEVMESCQTRISKLE--QQQQQQVVQLE 329 (395)
T ss_pred HHHHHHHHHHHHHHHH--HHHhhhhhhhc
Confidence 5556677777788888 66666655543
No 424
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=57.39 E-value=1.3e+02 Score=27.82 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028818 52 HSALRSQLAEKDSRIAELQSQIE 74 (203)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s 74 (203)
|..|+.+|.|.+..++++++.+.
T Consensus 114 vd~Lkd~lee~eE~~~~~~re~~ 136 (302)
T PF09738_consen 114 VDLLKDKLEELEETLAQLQREYR 136 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555544443
No 425
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=57.08 E-value=53 Score=31.30 Aligned_cols=58 Identities=19% Similarity=0.344 Sum_probs=35.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 028818 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKEN 98 (203)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~ 98 (203)
|++|-..|-.+...|-++..+-.....++++++.++..-+. .-|.+..++++++..|-
T Consensus 264 I~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~Kqem 324 (384)
T KOG0972|consen 264 IASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEM 324 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666666666666655554 44555666666655543
No 426
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=57.03 E-value=88 Score=33.65 Aligned_cols=31 Identities=13% Similarity=0.326 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 47 DLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (203)
Q Consensus 47 ~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le 77 (203)
+|-+++..+|..|.|-.+....+-++.+.||
T Consensus 327 kltrqkadirc~LlEarrk~egfddk~~eLE 357 (1265)
T KOG0976|consen 327 KLTRQKADIRCALLEARRKAEGFDDKLNELE 357 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 3446677777777766555544444444444
No 427
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=56.98 E-value=9.6 Score=26.98 Aligned_cols=28 Identities=39% Similarity=0.544 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 028818 33 ARKITSIAISTRVSDLESEHSALRSQLA 60 (203)
Q Consensus 33 arkIts~A~atRVs~LE~E~~~LR~~La 60 (203)
+|.....+...|+++||.|-+.||.+|.
T Consensus 19 ~R~~d~~~a~~rl~~l~~EN~~Lr~eL~ 46 (52)
T PF12808_consen 19 ARSLDRSAARKRLSKLEGENRLLRAELE 46 (52)
T ss_pred hccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 4555667888999999999999998886
No 428
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=56.94 E-value=2.2e+02 Score=28.61 Aligned_cols=81 Identities=20% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH---------------HH
Q 028818 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEA---------------LT 102 (203)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~---------------La 102 (203)
|..|+..|=.+......+..-=......|+.|+...|.... ..|+.+.+.+..|++|... |+
T Consensus 418 Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLa 497 (518)
T PF10212_consen 418 YMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLA 497 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhHHHHHHHHHH
Q 028818 103 NTVRKLQRDVSKLEVFRKT 121 (203)
Q Consensus 103 ~TvKkL~rDvaKLE~FKk~ 121 (203)
+-..+|..+=...++||..
T Consensus 498 smNeqL~~Q~eeI~~LK~~ 516 (518)
T PF10212_consen 498 SMNEQLAKQREEIQTLKLA 516 (518)
T ss_pred HHHHHHHHHHHHHHHHhhc
No 429
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=56.93 E-value=1.9e+02 Score=27.98 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 54 ALRSQLAEKDSRIAELQSQIESIYSS 79 (203)
Q Consensus 54 ~LR~~LaEKd~~i~~Lq~r~s~Le~~ 79 (203)
..|..+.|+.....+|+-+-..|-.+
T Consensus 89 ~i~es~~e~q~e~~qL~~qnqkL~nq 114 (401)
T PF06785_consen 89 KIRESVEERQQESEQLQSQNQKLKNQ 114 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34444555555555555444444333
No 430
>COG3334 Uncharacterized conserved protein [Function unknown]
Probab=56.90 E-value=1.4e+02 Score=26.28 Aligned_cols=84 Identities=19% Similarity=0.266 Sum_probs=49.5
Q ss_pred hhCCCCch-hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 028818 20 QVLPSDPF-EQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSK-- 96 (203)
Q Consensus 20 ~vLP~DP~-EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~-- 96 (203)
.-+|..+- .|....+.=+..+=+.+.+. ..++.++.+|-+.|.++.+++..||.. .++++..+++......
T Consensus 44 ~~~~~~~~~~~~e~~k~~~~i~da~~dq~-----~~~q~e~~~~lk~~a~~~E~lk~lE~~-kae~k~~~e~re~~l~~~ 117 (192)
T COG3334 44 AELAEKKAAAQSEIEKFCANIADAAADQL-----YALQKELLEKLKDLAEVNERLKALEKK-KAELKDLEEEREGILRSK 117 (192)
T ss_pred hhcccccchhhhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 44444443 66666665555444333332 666777777777788888888877776 5666666666666653
Q ss_pred --HHHHHHHHHHHHh
Q 028818 97 --ENEALTNTVRKLQ 109 (203)
Q Consensus 97 --E~~~La~TvKkL~ 109 (203)
|.+.|..+.++.-
T Consensus 118 qae~~klv~iY~~Mk 132 (192)
T COG3334 118 QAEDGKLVKIYSKMK 132 (192)
T ss_pred HhhhhHHHHHHHcCC
Confidence 2333555554443
No 431
>COG5570 Uncharacterized small protein [Function unknown]
Probab=56.89 E-value=24 Score=25.55 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028818 64 SRIAELQSQIESIYSSLS 81 (203)
Q Consensus 64 ~~i~~Lq~r~s~Le~~L~ 81 (203)
.|+++|++|...||.+++
T Consensus 5 shl~eL~kkHg~le~ei~ 22 (57)
T COG5570 5 SHLAELEKKHGNLEREIQ 22 (57)
T ss_pred HHHHHHHHhhchHHHHHH
Confidence 466777777777777777
No 432
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=56.85 E-value=90 Score=31.16 Aligned_cols=87 Identities=15% Similarity=0.213 Sum_probs=49.9
Q ss_pred HhhCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 19 LQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEK----DSRIAELQSQIESIYSSLSDKLGQAQADKERL 94 (203)
Q Consensus 19 l~vLP~DP~EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEK----d~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL 94 (203)
|+.=|+|+-.+-.|.- ...+++.++..+-.++..+|..+.+. =..|..|=+++..|..++. +....-..-+.|
T Consensus 131 ls~~P~~~a~R~~vl~--~A~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~qIa~LN~qI~-~~~~~g~~~ndL 207 (627)
T PRK06665 131 LSNYPEGLAERQVVLE--RAQSLGERIHDRYRSLERIRDMANDEIEITVEEINNILRNIADLNEQIV-KSQAMGDNPNDL 207 (627)
T ss_pred HHhCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcCCCCchhh
Confidence 4556666665555544 45677888888777777777765532 2444555555555555554 111111123457
Q ss_pred HHHHHHHHHHHHHH
Q 028818 95 SKENEALTNTVRKL 108 (203)
Q Consensus 95 ~~E~~~La~TvKkL 108 (203)
..+|+.|...+-++
T Consensus 208 lDqRD~ll~eLS~~ 221 (627)
T PRK06665 208 LDRRDLLVDKLSSL 221 (627)
T ss_pred HHHHHHHHHHHHhh
Confidence 77777776665554
No 433
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=56.84 E-value=1.3e+02 Score=32.89 Aligned_cols=71 Identities=28% Similarity=0.376 Sum_probs=46.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028818 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (203)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (203)
...+.+.|..|+..++..+.+|+.+|.+|..-+.... +|+.....++..+..+++.|..+=|.|-|.=.+|
T Consensus 409 ~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~----~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l 479 (1200)
T KOG0964|consen 409 TKEQENILQKEIEDLESELKEKLEEIKELESSINETK----GRMEEFDAENTELKRELDELQDKRKELWREEKKL 479 (1200)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888999999999999999988876655333 3444555555555555555555555555555444
No 434
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=56.82 E-value=59 Score=24.44 Aligned_cols=43 Identities=23% Similarity=0.211 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 66 IAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKL 108 (203)
Q Consensus 66 i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvKkL 108 (203)
..+|++++.....+|. =.--.|-.-+++|.+||+.+...+.+|
T Consensus 24 ~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~~l 69 (70)
T PF08606_consen 24 NFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREALAEL 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhc
Confidence 3556666666666665 122345556789999999988777655
No 435
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=56.81 E-value=95 Score=24.40 Aligned_cols=42 Identities=26% Similarity=0.303 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 028818 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (203)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq 127 (203)
....++.+|..++..|...|++|+-+.+.++..-|.-.....
T Consensus 61 ~~~~e~~~L~~~~~~l~~ei~~L~dg~~~i~e~AR~~l~~~~ 102 (117)
T COG2919 61 AQQAELEKLSARNTALEAEIKDLKDGRDYIEERARSELGMSK 102 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhCCCC
Confidence 666778888888888888888888887777777776666333
No 436
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=56.29 E-value=1.1e+02 Score=28.89 Aligned_cols=62 Identities=19% Similarity=0.343 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 028818 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (203)
Q Consensus 66 i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~ 128 (203)
+..|+.+.+.+-.++. +++...++..+|..|-..|...++.|...+..+|.=-..++.+|-+
T Consensus 44 ~~~lr~~rn~~sk~i~-~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN 105 (425)
T PRK05431 44 LEELQAERNALSKEIG-QAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIPN 105 (425)
T ss_pred HHHHHHHHHHHHHHHH-HHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3444444444444443 1111222334566666666666777777666666666666666643
No 437
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=56.27 E-value=1.2e+02 Score=25.22 Aligned_cols=31 Identities=32% Similarity=0.470 Sum_probs=13.3
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 028818 50 SEHSALRSQLA-EKDSRIAELQSQIESIYSSL 80 (203)
Q Consensus 50 ~E~~~LR~~La-EKd~~i~~Lq~r~s~Le~~L 80 (203)
+.+..||..+. -...+++.|+.....|...+
T Consensus 58 a~~~eLr~el~~~~k~~~~~lr~~~e~L~~ei 89 (177)
T PF07798_consen 58 AAIAELRSELQNSRKSEFAELRSENEKLQREI 89 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555554 22233344444444444433
No 438
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=56.24 E-value=1.4e+02 Score=26.04 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 028818 83 KLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (203)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~ 121 (203)
.+....++|.+|.+|+..|...+..++.--+..+.+|+.
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~l 108 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQELEQLEAENARLREL 108 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667777777777777777777666555556666663
No 439
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=56.19 E-value=69 Score=23.13 Aligned_cols=11 Identities=55% Similarity=1.062 Sum_probs=9.6
Q ss_pred hHHHHhhCCCC
Q 028818 15 PEEVLQVLPSD 25 (203)
Q Consensus 15 p~eil~vLP~D 25 (203)
|.+||.+||+|
T Consensus 13 ~~~vL~~LP~~ 23 (109)
T PF10367_consen 13 PIDVLKLLPDD 23 (109)
T ss_pred HHHHHHhCcCC
Confidence 78899999985
No 440
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=56.09 E-value=1.3e+02 Score=25.83 Aligned_cols=74 Identities=16% Similarity=0.274 Sum_probs=50.1
Q ss_pred HHHHhhhhhHHHHHHHHH---HHH----HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRS---QLA----EKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSKENEALT 102 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~---~La----EKd~~i~~Lq~r~s~Le~~L~----------~rL~~a~ee~~kL~~E~~~La 102 (203)
-+.++.+..|.+..+|-. .|. =....++.++++|.....+|. --++++++--+..++|++.|+
T Consensus 53 kVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv 132 (159)
T PF04949_consen 53 KVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLV 132 (159)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666554433 332 134567888889988888886 336678888888999999998
Q ss_pred HHHHHHhhhHH
Q 028818 103 NTVRKLQRDVS 113 (203)
Q Consensus 103 ~TvKkL~rDva 113 (203)
..+-.|-.+-+
T Consensus 133 ~~L~eLv~eSE 143 (159)
T PF04949_consen 133 TRLMELVSESE 143 (159)
T ss_pred HHHHHHHHHHH
Confidence 88777755433
No 441
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=55.85 E-value=19 Score=30.38 Aligned_cols=32 Identities=22% Similarity=0.458 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 50 ~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
.|+.+|..+|-+....+..++.+|+.+-..+.
T Consensus 105 ~Ea~~L~~KLkeEq~kv~~ME~~v~elas~m~ 136 (152)
T PF11500_consen 105 AEAMRLAEKLKEEQEKVAEMERHVTELASQMA 136 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555444444
No 442
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=55.78 E-value=1.4e+02 Score=29.52 Aligned_cols=64 Identities=13% Similarity=0.205 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028818 53 SALRSQLAEKDSRIAELQSQIESIYSSLS-DKLGQA--QADKERLSKENEALTNTVRKLQRDVSKLE 116 (203)
Q Consensus 53 ~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~-~rL~~a--~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (203)
..++.++.+-+..|..|++++..|+.++. .-+-.. ..+..+|.+|...+...+..+...-..|+
T Consensus 559 ~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~ 625 (638)
T PRK10636 559 QPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQ 625 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555666666666666666664 101000 11345555555555555555555544444
No 443
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=55.67 E-value=48 Score=25.64 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 028818 83 KLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFR 119 (203)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FK 119 (203)
|+..+..++++|++||..|..-.+--+.+|---+.=|
T Consensus 24 k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrq 60 (87)
T PF10883_consen 24 KVKKAKKQNAKLQKENEQLKTEKAVAETQVKNAKVRQ 60 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666665555555554444333
No 444
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=55.55 E-value=58 Score=29.10 Aligned_cols=73 Identities=21% Similarity=0.356 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhhHHHHHHH
Q 028818 57 SQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSK--------ENEALTNTVRKLQRDVSKLEVF 118 (203)
Q Consensus 57 ~~LaEKd~~i~~Lq~r~s~Le~~L~----------~rL~~a~ee~~kL~~--------E~~~La~TvKkL~rDvaKLE~F 118 (203)
..+..+|....-++++|+..|.-+. .|....++....|.+ |+=+|...++.+...|+++..+
T Consensus 4 ~~~~~rd~q~K~i~~~i~~vEkhFg~lC~~~a~ytRKtArLRDk~D~lak~l~~yA~~E~~~l~~~L~~fae~la~vqDY 83 (219)
T PF06730_consen 4 RELRSRDSQTKFIQDRITNVEKHFGELCQLFAAYTRKTARLRDKGDELAKQLQDYANTENPNLKLGLKNFAECLAKVQDY 83 (219)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHH
Confidence 3455666666666666666665443 233333333334443 4445666899999999999999
Q ss_pred HHHHHhhcccc
Q 028818 119 RKTLVQSLKDD 129 (203)
Q Consensus 119 Kk~LmqSLq~d 129 (203)
+...|..|..-
T Consensus 84 Rqa~v~RlE~K 94 (219)
T PF06730_consen 84 RQAEVERLEAK 94 (219)
T ss_pred HHHHHHHHHHH
Confidence 99999877644
No 445
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=55.43 E-value=3.9 Score=41.98 Aligned_cols=78 Identities=23% Similarity=0.365 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 028818 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (203)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~ 121 (203)
+..||.++..|+.++.+-.+.+.+|......|+..+. ..|..+......|.+.+.+|..++.-+.+.+.---.-|-+
T Consensus 182 ~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~ 261 (859)
T PF01576_consen 182 RKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQA 261 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhh
Confidence 4556666666666666666666666666666665555 4455555555555555555555555555555444333333
Q ss_pred H
Q 028818 122 L 122 (203)
Q Consensus 122 L 122 (203)
|
T Consensus 262 L 262 (859)
T PF01576_consen 262 L 262 (859)
T ss_dssp -
T ss_pred h
Confidence 3
No 446
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=55.40 E-value=91 Score=23.74 Aligned_cols=85 Identities=19% Similarity=0.294 Sum_probs=62.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (203)
.+..|-..|+..-..|+..+..=+..+.+-..+...+..... ..-.....++.+|..+...|..-+.++...|.++.
T Consensus 29 ~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 29 QLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777777777777777777777666665555444 34456667788888888888888888888888888
Q ss_pred HHHHHHHh
Q 028818 117 VFRKTLVQ 124 (203)
Q Consensus 117 ~FKk~Lmq 124 (203)
.|+.-|.+
T Consensus 109 ~Y~~fL~~ 116 (126)
T PF13863_consen 109 KYEEFLEK 116 (126)
T ss_pred HHHHHHHH
Confidence 88877765
No 447
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=55.08 E-value=1e+02 Score=24.15 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=12.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHH
Q 028818 37 TSIAISTRVSDLESEHSALRSQL 59 (203)
Q Consensus 37 ts~A~atRVs~LE~E~~~LR~~L 59 (203)
+..-+..++.+||.++..+..++
T Consensus 9 ~~~~L~~~~~~le~~i~~~~~~~ 31 (171)
T PF03357_consen 9 TIRRLEKQIKRLEKKIKKLEKKA 31 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566666655555444
No 448
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=55.04 E-value=39 Score=25.54 Aligned_cols=36 Identities=28% Similarity=0.503 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (203)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~L 76 (203)
+..|+..|+.++..|...+.++...+..++..+..+
T Consensus 92 l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 92 LKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 449
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.94 E-value=1.1e+02 Score=31.61 Aligned_cols=74 Identities=23% Similarity=0.268 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 028818 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (203)
Q Consensus 47 ~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~------~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk 120 (203)
.+|.+-++||..|-|=--.-+-|=..|+.||.+=+ +-|+...=+-.-|--|+..|..++-=||-.+.-+..+|.
T Consensus 146 ~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~~Lk~ 225 (772)
T KOG0999|consen 146 AVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKE 225 (772)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888887533322333345666665433 566777777777888888888888888888877776664
No 450
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=54.93 E-value=23 Score=29.82 Aligned_cols=7 Identities=29% Similarity=0.582 Sum_probs=3.7
Q ss_pred hHHHHHH
Q 028818 29 QLDVARK 35 (203)
Q Consensus 29 QLdlark 35 (203)
|++-|++
T Consensus 39 Qf~~t~~ 45 (146)
T PF05852_consen 39 QFQFTKK 45 (146)
T ss_pred HHHHHHH
Confidence 5555553
No 451
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.69 E-value=1.3e+02 Score=32.12 Aligned_cols=42 Identities=17% Similarity=0.291 Sum_probs=27.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
++...+..|+-|...|..++.++-..+..|.++++-|..+|.
T Consensus 675 ~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 675 NLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455566666666666666666666666667777777766665
No 452
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=54.62 E-value=1.7e+02 Score=26.51 Aligned_cols=19 Identities=37% Similarity=0.490 Sum_probs=12.6
Q ss_pred CChHHHHhhCCCCchhhHH
Q 028818 13 DLPEEVLQVLPSDPFEQLD 31 (203)
Q Consensus 13 ~lp~eil~vLP~DP~EQLd 31 (203)
.|-+||-.||-.+|..=.|
T Consensus 2 sL~Eeikrvl~enpeilvd 20 (231)
T COG5493 2 SLAEEIKRVLLENPEILVD 20 (231)
T ss_pred CHHHHHHHHHHhCcHHHHH
Confidence 4667777888777744443
No 453
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=54.61 E-value=1.3e+02 Score=25.42 Aligned_cols=40 Identities=23% Similarity=0.399 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 61 EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEA 100 (203)
Q Consensus 61 EKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~ 100 (203)
++...+..+++|+..-+..|..+..........|.+....
T Consensus 75 ~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~ 114 (201)
T PF12072_consen 75 ERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEE 114 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555544444443333333333333333333
No 454
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=54.39 E-value=67 Score=28.98 Aligned_cols=63 Identities=21% Similarity=0.310 Sum_probs=37.1
Q ss_pred HHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSA-LRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALT 102 (203)
Q Consensus 40 A~atRVs~LE~E~~~-LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La 102 (203)
.|...+.+|+.++.. -+.....+.+.+..++..+..|..+++....+...-...|++|++..-
T Consensus 28 ~Y~~ei~~L~~~i~~~~~~~~~~~~k~~~~l~~~i~~L~~E~~~h~~~~~~v~~~L~~~k~~wf 91 (298)
T PF11262_consen 28 LYDEEIERLEKEISQMSRATISKKKKEKERLKNLIDKLPEELKKHQEHVEKVKKRLQEEKDSWF 91 (298)
T ss_pred HHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 344455556666555 333444566666777777777777666445555555566666666655
No 455
>PHA00489 scaffolding protein
Probab=54.38 E-value=60 Score=25.88 Aligned_cols=49 Identities=24% Similarity=0.333 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 028818 60 AEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (203)
Q Consensus 60 aEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (203)
.||...+..|+.-|.+.-.++. ...+--.||..||+.|+-.-.||-|.|
T Consensus 23 sErTeaLqqlr~~ygSf~sEy~----elT~a~eKl~aek~DLivsNskLFrql 71 (101)
T PHA00489 23 SERTEALQQLRESYGSFHSEYE----ELTEALEKLTAEKEDLIVSNSKLFRQL 71 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhhhhhhhhHHHHHHc
Confidence 4788888889988888888886 777778899999999988777776554
No 456
>PF14739 DUF4472: Domain of unknown function (DUF4472)
Probab=54.25 E-value=1.1e+02 Score=24.51 Aligned_cols=61 Identities=25% Similarity=0.371 Sum_probs=32.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRD 111 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rD 111 (203)
.++++|-.||+.+-.|-.....+...+.++. .++..+.++..+|..|--.|-..+..+..+
T Consensus 32 ELk~~vL~lE~rvleLel~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~~e~~~l~~~~~a~~k~ 92 (108)
T PF14739_consen 32 ELKNEVLRLENRVLELELHGDKAAPQIADLR-----------HRLAEAQEDRQELQEEYVSLKKNYQALPKA 92 (108)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhhHHHhhHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555555544444443333333333 555566667777777766665555555444
No 457
>PF15480 DUF4640: Domain of unknown function (DUF4640)
Probab=54.17 E-value=20 Score=33.29 Aligned_cols=30 Identities=30% Similarity=0.385 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 028818 92 ERLSKENEALTNTVRKLQRDVSKLEVFRKTLV 123 (203)
Q Consensus 92 ~kL~~E~~~La~TvKkL~rDvaKLE~FKk~Lm 123 (203)
.|..+|+. ..|+.||+.-|.|||+|..+..
T Consensus 104 Dk~pee~t--~lt~~kLd~lvQklEtflen~k 133 (292)
T PF15480_consen 104 DKYPEEKT--KLTLSKLDNLVQKLETFLENQK 133 (292)
T ss_pred ccChhhcc--ccchhhhhhHHHHHHHHHHhhc
Confidence 34555554 4589999999999999987643
No 458
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=54.17 E-value=95 Score=27.60 Aligned_cols=32 Identities=13% Similarity=0.281 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 50 ~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
++|..||..+.+.+..+.+.+.++..+-.++.
T Consensus 32 s~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~ 63 (207)
T PF05546_consen 32 SEIEKLKKSIEELEDELEAARQEVREAKAAYD 63 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666666666666666555555
No 459
>PRK11415 hypothetical protein; Provisional
Probab=54.10 E-value=44 Score=24.53 Aligned_cols=57 Identities=18% Similarity=0.265 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhh
Q 028818 53 SALRSQLAEKDSRIAELQSQIESIYSSLSDKLG-----QAQADKERLSKENEALTNTVRKLQR 110 (203)
Q Consensus 53 ~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~-----~a~ee~~kL~~E~~~La~TvKkL~r 110 (203)
+.+=.+|...|.++..|.+++..|+.++. ++. ....+...|-++|=.|-+.+-.+-+
T Consensus 6 ~d~I~~Lk~~D~~F~~L~~~h~~Ld~~I~-~lE~~~~~~~d~~i~~LKk~KL~LKDeI~~~L~ 67 (74)
T PRK11415 6 RDLISRLKNENPRFMSLFDKHNKLDHEIA-RKEGSDGRGYNAEVVRMKKQKLQLKDEMLKILQ 67 (74)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHcCCCCCCHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34446778899999999999999999996 111 2356677788887777666655443
No 460
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=54.10 E-value=1.5e+02 Score=25.82 Aligned_cols=80 Identities=10% Similarity=0.174 Sum_probs=49.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 028818 44 RVSDLESEHSALRSQLAEKDSRIAELQ---SQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (203)
Q Consensus 44 RVs~LE~E~~~LR~~LaEKd~~i~~Lq---~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk 120 (203)
+|..+|.+++.|+..+..=-..+..+- .-+..... .......+-.+....-...+.++++...-+..+++++.
T Consensus 3 ~i~~~E~d~~~Le~~l~Kl~K~~~~~~dag~~~~~a~~----~F~~~l~d~~~~~~~De~i~~~l~kF~~~l~ei~~~~~ 78 (200)
T cd07638 3 ALEDVEGDVAELELKLDKLVKLCIGMIDAGKAFCQANK----QFMNGIRDLAQYSSKDAVIETSLTKFSDTLQEMINYHT 78 (200)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 577888888888888865444443332 22222233 33344455544545555677788888888888888887
Q ss_pred HHHhhcc
Q 028818 121 TLVQSLK 127 (203)
Q Consensus 121 ~LmqSLq 127 (203)
.|+.-.+
T Consensus 79 ~L~~q~~ 85 (200)
T cd07638 79 ILFDQAQ 85 (200)
T ss_pred HHHHHHH
Confidence 7776443
No 461
>PRK14160 heat shock protein GrpE; Provisional
Probab=54.06 E-value=1.6e+02 Score=26.05 Aligned_cols=39 Identities=10% Similarity=0.328 Sum_probs=30.5
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 43 tRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
..+..|+.++..|.+++.+....+.+|++++-.+.+.+.
T Consensus 54 ~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~Aefe 92 (211)
T PRK14160 54 VKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYD 92 (211)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888888888888888887777776
No 462
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=54.03 E-value=8.2 Score=27.17 Aligned_cols=18 Identities=44% Similarity=0.599 Sum_probs=15.0
Q ss_pred HHHhhhhhHHHHHHHHHH
Q 028818 41 ISTRVSDLESEHSALRSQ 58 (203)
Q Consensus 41 ~atRVs~LE~E~~~LR~~ 58 (203)
+.-||+.||.|++.||..
T Consensus 16 l~vrv~eLEeEV~~LrKI 33 (48)
T PF14077_consen 16 LRVRVSELEEEVRTLRKI 33 (48)
T ss_pred heeeHHHHHHHHHHHHHH
Confidence 456899999999999864
No 463
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=54.00 E-value=2.2e+02 Score=27.80 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH
Q 028818 66 IAELQSQIESIYSSLS------------DKLGQAQADKERLSKENE 99 (203)
Q Consensus 66 i~~Lq~r~s~Le~~L~------------~rL~~a~ee~~kL~~E~~ 99 (203)
..+|..|+..+..++. .++..+..+...|.+|-.
T Consensus 48 ~~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~~L~~eL~ 93 (593)
T PF06248_consen 48 AKDLIERSKSLAREINDLLQSEIENEIQPQLRDAAEELQELKRELE 93 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666552 566666666666665544
No 464
>PRK00295 hypothetical protein; Provisional
Probab=53.98 E-value=82 Score=22.81 Aligned_cols=13 Identities=15% Similarity=0.314 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHH
Q 028818 69 LQSQIESIYSSLS 81 (203)
Q Consensus 69 Lq~r~s~Le~~L~ 81 (203)
+++|+..||..+.
T Consensus 3 ~e~Ri~~LE~kla 15 (68)
T PRK00295 3 LEERVTELESRQA 15 (68)
T ss_pred HHHHHHHHHHHHH
Confidence 4566666665554
No 465
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=53.91 E-value=1.1e+02 Score=24.21 Aligned_cols=42 Identities=29% Similarity=0.314 Sum_probs=33.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
.+|.+.-.++.++..+|.++.++-..+..|+.++..++..+.
T Consensus 45 ~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~ 86 (150)
T PF07200_consen 45 ELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQD 86 (150)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888999999999999999999999988888877665
No 466
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=53.89 E-value=58 Score=23.99 Aligned_cols=23 Identities=26% Similarity=0.266 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 028818 88 QADKERLSKENEALTNTVRKLQR 110 (203)
Q Consensus 88 ~ee~~kL~~E~~~La~TvKkL~r 110 (203)
...+.+|..||..|-..+..+..
T Consensus 13 i~~~~~L~~EN~~Lr~q~~~~~~ 35 (65)
T TIGR02449 13 LEYLERLKSENRLLRAQEKTWRE 35 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444333333
No 467
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=53.81 E-value=1.7e+02 Score=29.77 Aligned_cols=83 Identities=20% Similarity=0.261 Sum_probs=51.4
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHH
Q 028818 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALT----NTVRKLQRDVSK 114 (203)
Q Consensus 42 atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La----~TvKkL~rDvaK 114 (203)
+..|.++|.++..|++.+.+=...+..=...++.|+..|. ..|.....+++++++.-.+|- +.=-.|.|=+.+
T Consensus 346 ~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~ 425 (570)
T COG4477 346 LGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSK 425 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777777666666555555555555554 444577777777766555543 223456666677
Q ss_pred HHHHHHHHHh
Q 028818 115 LEVFRKTLVQ 124 (203)
Q Consensus 115 LE~FKk~Lmq 124 (203)
|...||-+-.
T Consensus 426 l~eikR~mek 435 (570)
T COG4477 426 LHEIKRYMEK 435 (570)
T ss_pred HHHHHHHHHH
Confidence 7777776654
No 468
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=53.80 E-value=1.4e+02 Score=33.14 Aligned_cols=66 Identities=17% Similarity=0.370 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028818 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (203)
Q Consensus 50 ~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~------~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (203)
.+...+|..+.+...+|..-.++++.+|.++. .-+....++..++..+...|...-+++..+++.|
T Consensus 216 ~~~e~~~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i~ei~~~~~el~k~~~~~~~l~~e~~~l~~~~~~l 287 (1294)
T KOG0962|consen 216 ERAEVLRLNIHSGQRKIEKSKEEVSELENELGPIEAKIEEIEKSLKELEKLLKQVKLLDSEHKNLKKQISRL 287 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667778888888888888888888888887 3344445555555555555555555555555444
No 469
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=53.53 E-value=1.5e+02 Score=25.59 Aligned_cols=14 Identities=14% Similarity=0.375 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 028818 67 AELQSQIESIYSSL 80 (203)
Q Consensus 67 ~~Lq~r~s~Le~~L 80 (203)
..|+.-+..++..|
T Consensus 139 ~~Le~~~~~le~~l 152 (221)
T PF05700_consen 139 EQLEAMLKRLEKEL 152 (221)
T ss_pred HHHHHHHHHHHHHH
Confidence 33433344444433
No 470
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=53.32 E-value=2.9e+02 Score=28.95 Aligned_cols=35 Identities=34% Similarity=0.470 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 47 ~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
.|...+..|.+.|.++++.++++..++...+..++
T Consensus 518 ~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lq 552 (739)
T PF07111_consen 518 QLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQ 552 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 44445677788888888888888888887777776
No 471
>PF11418 Scaffolding_pro: Phi29 scaffolding protein; InterPro: IPR024374 This protein is also referred to as Gp7. The protein contains a DNA-binding function and may have a role in mediating the structural transition from prohead to mature virus and also scaffold release [].Gp7 is arranged within the capsid as a series of concentric shells [].; PDB: 1NOH_C 1NO4_C 3MTU_E 3OA7_A.
Probab=53.06 E-value=1.1e+02 Score=24.19 Aligned_cols=49 Identities=24% Similarity=0.307 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 028818 60 AEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (203)
Q Consensus 60 aEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (203)
.||...+..||.-|.+.-.++. ....--.||.+||+.|+-.-.||-|++
T Consensus 22 sErTeaLqqlr~~~~sf~sEy~----dlT~~~eKl~aek~DL~vsNskLFrQ~ 70 (97)
T PF11418_consen 22 SERTEALQQLRESYTSFHSEYE----DLTEALEKLTAEKEDLIVSNSKLFRQH 70 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhhhhhhhhHHHHHHh
Confidence 4788888889888888888886 777777899999999987777776554
No 472
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=52.91 E-value=13 Score=28.48 Aligned_cols=43 Identities=28% Similarity=0.452 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 028818 84 LGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (203)
Q Consensus 84 L~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSL 126 (203)
|....++...|.+|++.|...+..|+..+..++.-...|-+.|
T Consensus 27 l~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 27 LDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 4466677778888999999999999999888876666555554
No 473
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=52.80 E-value=80 Score=23.93 Aligned_cols=21 Identities=24% Similarity=0.370 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHH
Q 028818 94 LSKENEALTNTVRKLQRDVSK 114 (203)
Q Consensus 94 L~~E~~~La~TvKkL~rDvaK 114 (203)
|.+.-+.+..++..|+..|+.
T Consensus 40 l~~klDa~~~~l~~l~~~V~~ 60 (75)
T PF05531_consen 40 LNKKLDAQSAQLTTLNTKVNE 60 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555554443
No 474
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=52.76 E-value=74 Score=30.56 Aligned_cols=42 Identities=21% Similarity=0.306 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccC
Q 028818 90 DKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDED 131 (203)
Q Consensus 90 e~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d~~ 131 (203)
....+..+...|...++.|.+-+..|+..-+.|-.+......
T Consensus 194 ~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~~~~ 235 (475)
T PF10359_consen 194 DDPELKSDIEELERHISSLKERIEFLENMLEDLEDSESSSDQ 235 (475)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Confidence 445667888888888888988888888888777766554443
No 475
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=52.59 E-value=1.2e+02 Score=29.35 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=25.6
Q ss_pred HhhCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 028818 19 LQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLA 60 (203)
Q Consensus 19 l~vLP~DP~EQLdlarkIts~A~atRVs~LE~E~~~LR~~La 60 (203)
|+.=|+|+-.+-.|.- ...+++.++..+-.++..+|..+.
T Consensus 131 la~~P~~~~~r~~vl~--~a~~La~~~n~~~~~L~~~~~~~~ 170 (507)
T PRK07739 131 LSKNPENLGARSVVRQ--RAQALAETFNYLSQSLTDIQNDLK 170 (507)
T ss_pred HHhCcCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555777766655554 455677777777777776666654
No 476
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=52.53 E-value=83 Score=22.42 Aligned_cols=43 Identities=21% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 32 VARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (203)
Q Consensus 32 larkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~L 76 (203)
+|.-+...-+..| .+..++..+.+++.+......+|+.+++.|
T Consensus 15 ~~~~~v~~~~~~~--~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 15 SAISVVSAQHQTR--QLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 477
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=52.48 E-value=1.9e+02 Score=26.88 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=7.8
Q ss_pred HhhhhhHHHHHHHHHHHH
Q 028818 43 TRVSDLESEHSALRSQLA 60 (203)
Q Consensus 43 tRVs~LE~E~~~LR~~La 60 (203)
.++..|+.++..+.+.+.
T Consensus 60 ~~~~~L~~ql~~~~~~~~ 77 (372)
T PF04375_consen 60 QQLQALQQQLQQLQQQLE 77 (372)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344444444444444333
No 478
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=52.40 E-value=1.9e+02 Score=26.45 Aligned_cols=23 Identities=13% Similarity=0.115 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHH
Q 028818 29 QLDVARKITSIAISTRVSDLESE 51 (203)
Q Consensus 29 QLdlarkIts~A~atRVs~LE~E 51 (203)
++.=|..|..-....++..+.+|
T Consensus 49 ~~~~~i~~le~~~~~~l~~ak~e 71 (258)
T PF15397_consen 49 IYRTAIDILEYSNHKQLQQAKAE 71 (258)
T ss_pred HHHHHHHHHHccChHHHHHHHHH
Confidence 33333333333444444433333
No 479
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=52.18 E-value=1.2e+02 Score=24.05 Aligned_cols=83 Identities=22% Similarity=0.328 Sum_probs=37.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 028818 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (203)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~ 121 (203)
+..|-.+...|-....++...+.+++.++...-..+. ........+...+ ..+=+......+|...++..|.-=..
T Consensus 36 ~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l-~~~~s~~~l~~~L~~~~~e~eeeSe~ 114 (150)
T PF07200_consen 36 REELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDEL-SSNYSPDALLARLQAAASEAEEESEE 114 (150)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444555555555444444433 2222333333333 34444455566666666666665555
Q ss_pred HHhhccc
Q 028818 122 LVQSLKD 128 (203)
Q Consensus 122 LmqSLq~ 128 (203)
|..+|.+
T Consensus 115 lae~fl~ 121 (150)
T PF07200_consen 115 LAEEFLD 121 (150)
T ss_dssp HC-S-SS
T ss_pred HHHHHhC
Confidence 5555543
No 480
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=52.09 E-value=45 Score=27.44 Aligned_cols=20 Identities=20% Similarity=0.297 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028818 61 EKDSRIAELQSQIESIYSSL 80 (203)
Q Consensus 61 EKd~~i~~Lq~r~s~Le~~L 80 (203)
|....|...+.-+..|+.++
T Consensus 84 e~qsli~~yE~~~~kLe~e~ 103 (131)
T PF04859_consen 84 EQQSLIKTYEIVVKKLEAEL 103 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444443
No 481
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=52.00 E-value=1.4e+02 Score=24.79 Aligned_cols=9 Identities=11% Similarity=0.217 Sum_probs=4.1
Q ss_pred HHHHHHHHh
Q 028818 116 EVFRKTLVQ 124 (203)
Q Consensus 116 E~FKk~Lmq 124 (203)
|+.|-.+++
T Consensus 148 E~~K~~~lr 156 (177)
T PF07798_consen 148 ESLKWDTLR 156 (177)
T ss_pred HHHHHHHHH
Confidence 444444444
No 482
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=51.95 E-value=1.5e+02 Score=31.01 Aligned_cols=87 Identities=28% Similarity=0.413 Sum_probs=56.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH---HHHHHHHHHHHHHHHHHH----HHHH--
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQ-------SQIESIYSSLS---DKLGQAQADKERLSKENE----ALTN-- 103 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq-------~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~----~La~-- 103 (203)
-|..-|+.-|.+++-|-.++.+|+..|.+|. ++++.|+..-- .-|+.+.+++.-|..|-. +|.-
T Consensus 230 ey~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~ 309 (786)
T PF05483_consen 230 EYKKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESE 309 (786)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHH
Confidence 4677888889999999999999999987764 44555554433 667777777777776655 2322
Q ss_pred -HHHHHhhhHHHHHHHHHHHHhhcccc
Q 028818 104 -TVRKLQRDVSKLEVFRKTLVQSLKDD 129 (203)
Q Consensus 104 -TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (203)
|-++|.- .|..-.+++.+-.++-
T Consensus 310 ~tq~~le~---~lq~~~k~~~qlt~eK 333 (786)
T PF05483_consen 310 STQKALEE---DLQQATKTLIQLTEEK 333 (786)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHhH
Confidence 2222222 4455566666655443
No 483
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=51.82 E-value=2.6e+02 Score=27.93 Aligned_cols=15 Identities=20% Similarity=0.206 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 028818 67 AELQSQIESIYSSLS 81 (203)
Q Consensus 67 ~~Lq~r~s~Le~~L~ 81 (203)
++|==|+...|.+..
T Consensus 430 gEllvrl~eaeea~~ 444 (488)
T PF06548_consen 430 GELLVRLREAEEAAS 444 (488)
T ss_pred HHHHHHHHhHHHHHH
Confidence 333334444444433
No 484
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=51.80 E-value=2.4e+02 Score=28.72 Aligned_cols=88 Identities=22% Similarity=0.356 Sum_probs=0.0
Q ss_pred HHHHhhhhhHHHHHHHHHHH----------HHHHHHHH-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQL----------AEKDSRIA-ELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTV 105 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L----------aEKd~~i~-~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~Tv 105 (203)
|+--|.-.+|.|+..||.+. .+|....+ ++.+++-.+..+.+ .-|.....+++.+++|+..|.+.+
T Consensus 163 aL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql 242 (596)
T KOG4360|consen 163 ALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQL 242 (596)
T ss_pred HHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhHHHHHHHHHHHHhhcc
Q 028818 106 RKLQRDVSKLEVFRKTLVQSLK 127 (203)
Q Consensus 106 KkL~rDvaKLE~FKk~LmqSLq 127 (203)
-.+.+.+--+--=|--+-.-||
T Consensus 243 ~d~qkk~k~~~~Ekeel~~~Lq 264 (596)
T KOG4360|consen 243 VDLQKKIKYLRHEKEELDEHLQ 264 (596)
T ss_pred HhhHHHHHHHHHHHHHHHHHHH
No 485
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=51.77 E-value=1.7e+02 Score=28.78 Aligned_cols=59 Identities=19% Similarity=0.405 Sum_probs=30.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALT 102 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La 102 (203)
.+..++..|+.....+...+.++......+++++..+...|. ...+++..+.+.-++|-
T Consensus 348 ~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~----~ie~~q~~~~~~l~~L~ 406 (560)
T PF06160_consen 348 ELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLE----EIEEEQEEINESLQSLR 406 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 444555566666666666666665555555555555554444 44444444444433333
No 486
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=51.75 E-value=1.6e+02 Score=25.37 Aligned_cols=34 Identities=26% Similarity=0.366 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 028818 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFR 119 (203)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FK 119 (203)
+...++.++..+...|...+-.|.+..+++..-|
T Consensus 121 ~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~k 154 (190)
T PF05266_consen 121 EKEAELKELESEIKELEMKILELQRQAAKLKEKK 154 (190)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666677777777777777655554333
No 487
>PF04363 DUF496: Protein of unknown function (DUF496); InterPro: IPR007458 Members of this family are uncharacterised proteins.
Probab=51.63 E-value=1.2e+02 Score=24.06 Aligned_cols=57 Identities=16% Similarity=0.362 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028818 53 SALRSQLAEKDSRIAELQSQIESIYSSLS-----------------------DKLGQAQADKERLSKENEALTNTVRKLQ 109 (203)
Q Consensus 53 ~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~-----------------------~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (203)
-.|+..+.+-+..|.+=|+||.-|+.-.+ +|.-.-.=.++.|.+|+..+...+|.+.
T Consensus 15 NKl~REi~Dn~kKIRDNqKRV~LLdNL~~YI~~~Ms~edi~~II~nMr~DYEdRVDDyiIknAElsKeRReis~k~k~~k 94 (95)
T PF04363_consen 15 NKLKREIEDNEKKIRDNQKRVLLLDNLSDYIKPDMSIEDIRAIIENMRSDYEDRVDDYIIKNAELSKERREISKKIKELK 94 (95)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhHHHHhHHHHHHhhHHHhHHHHHHHHHHHHhc
Confidence 45666677788888888888888876444 3333344456889999999988887653
No 488
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=51.49 E-value=86 Score=25.56 Aligned_cols=30 Identities=17% Similarity=0.360 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028818 82 DKLGQAQADKERLSKENEALTNTVRKLQRD 111 (203)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~TvKkL~rD 111 (203)
.|.....+++-||..||..|-+-+..|+--
T Consensus 77 qRVdsVKEEnLKLrSENQVLGQYIeNLMSa 106 (120)
T KOG3650|consen 77 QRVDSVKEENLKLRSENQVLGQYIENLMSA 106 (120)
T ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHhh
Confidence 455578899999999999999888777643
No 489
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=51.43 E-value=1.8e+02 Score=26.07 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=13.3
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHH
Q 028818 38 SIAISTRVSDLESEHSALRSQLAE 61 (203)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~LaE 61 (203)
...|..-+.++|.++..+.+++-.
T Consensus 149 ~d~~~~~le~i~~~~~~ie~~l~~ 172 (322)
T COG0598 149 VDNYFPVLEQIEDELEAIEDQLLA 172 (322)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhc
Confidence 335555555566665555555553
No 490
>PHA03185 UL14 tegument protein; Provisional
Probab=51.43 E-value=1.2e+02 Score=27.22 Aligned_cols=61 Identities=16% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 30 LDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKER 93 (203)
Q Consensus 30 LdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~k 93 (203)
+|+.++|-|++ ||...|.-++.++..+.+-...-..|...--=|.-.|+.+|-.+.+.+..
T Consensus 55 ~dl~aqLrS~a---Rve~VeQKar~Iq~rVEeQ~a~r~iL~~hRRyL~pdf~e~lD~~ED~l~e 115 (214)
T PHA03185 55 RELEARLKSRA---RLEMLRQHAACVKIRVEEQAERRDFLIAHRRYLDPALGERLDEAEDRLAD 115 (214)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
No 491
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=51.41 E-value=1.2e+02 Score=26.16 Aligned_cols=54 Identities=24% Similarity=0.330 Sum_probs=0.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSK 96 (203)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~ 96 (203)
......+...+.=+......|.||...+..-+.|+..|...|. .++.|..+..+
T Consensus 119 ~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~----~Ar~D~~~tk~ 172 (188)
T PF05335_consen 119 KAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQ----AARADYEKTKK 172 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
No 492
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=51.37 E-value=1.8e+02 Score=26.03 Aligned_cols=98 Identities=19% Similarity=0.275 Sum_probs=0.0
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhhHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 25 DPFEQLDVARKITSIAISTRVSDLESE-----------HSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKER 93 (203)
Q Consensus 25 DP~EQLdlarkIts~A~atRVs~LE~E-----------~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~k 93 (203)
+|+..+.-+.-..+.++...+..|+.. +..+|.-+.+++..-.+++.+...+...-.+| .++..+..+
T Consensus 110 ~~L~~~a~~~d~~~~~~~~~~~~l~~~f~~~Lkeyv~y~~slK~vlk~R~~~Q~~le~k~e~l~k~~~dr-~~~~~ev~~ 188 (243)
T cd07666 110 DSLKGMASCIDRCCKATDKRMKGLSEQLLPVIHEYVLYSETLMGVIKRRDQIQAELDSKVEALANKKADR-DLLKEEIEK 188 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 028818 94 LSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (203)
Q Consensus 94 L~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSL 126 (203)
|...-..-.++|| .|+.+.+..|+.=|...
T Consensus 189 ~e~kve~a~~~~k---~e~~Rf~~~k~~D~k~~ 218 (243)
T cd07666 189 LEDKVECANNALK---ADWERWKQNMQTDLRSA 218 (243)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
No 493
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.35 E-value=1.3e+02 Score=31.56 Aligned_cols=78 Identities=13% Similarity=0.244 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 028818 45 VSDLESEHSALRSQLAEKDSRI----AELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (203)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i----~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk 120 (203)
+++++.|++++..+|..=-+.- .+-++.+..++.++. ...++...++..-.+=..+|+.+.||+.+|.==||
T Consensus 42 i~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~da~~ai~----eL~~~i~eiks~ae~Te~~V~eiTrdIKqLD~AKk 117 (793)
T KOG2180|consen 42 IQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLADAQAAIE----ELFQKIQEIKSVAESTEAMVQEITRDIKQLDFAKK 117 (793)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHh
Q ss_pred HHHhhc
Q 028818 121 TLVQSL 126 (203)
Q Consensus 121 ~LmqSL 126 (203)
+|-.|+
T Consensus 118 NLTtSi 123 (793)
T KOG2180|consen 118 NLTTSI 123 (793)
T ss_pred hHHHHH
No 494
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=51.23 E-value=2.6e+02 Score=30.38 Aligned_cols=88 Identities=17% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028818 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (203)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~----~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (203)
++.|+..+|.++..|+..+.+|...-.+..-+-+....+-. .-+..-.+.|.+|.++-......+..|.++-.+-+
T Consensus 213 ~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~~~~~~~~~i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~ 292 (1109)
T PRK10929 213 AKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLAEQSGDLPKSIVAQFKINRELSQALNQQAQRMDLIASQQRQAA 292 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhccc
Q 028818 117 VFRKTLVQSLKD 128 (203)
Q Consensus 117 ~FKk~LmqSLq~ 128 (203)
+.-..+-|+++.
T Consensus 293 ~~l~~~~q~~~~ 304 (1109)
T PRK10929 293 SQTLQVRQALNT 304 (1109)
T ss_pred HHHHHHHHHHHH
No 495
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=51.13 E-value=1.2e+02 Score=27.29 Aligned_cols=59 Identities=19% Similarity=0.357 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhh
Q 028818 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKEN---EALTNTVRKLQR 110 (203)
Q Consensus 49 E~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~---~~La~TvKkL~r 110 (203)
|..+..|..-+.|+-. .+++++..++...+..+....+...+|.+.+ ..|...+.+|.+
T Consensus 1 ~~~l~~l~~pl~e~l~---~~~~~l~~~~~~~~~~~~~L~~~l~~l~~~~~~~~~l~~~~~~L~~ 62 (304)
T PF02646_consen 1 QEQLEQLLKPLKEQLE---KFEKRLEESFEQRSEEFGSLKEQLKQLSEANGEIQQLSQEASNLTS 62 (304)
T ss_pred ChhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
No 496
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=50.83 E-value=1.7e+02 Score=25.38 Aligned_cols=82 Identities=17% Similarity=0.336 Sum_probs=0.0
Q ss_pred HHHHHhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 028818 39 IAISTRVSDLESEH-SALRSQLAEKDSRIAELQSQIESIYSSLS----DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (203)
Q Consensus 39 ~A~atRVs~LE~E~-~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~----~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (203)
..+..|++.++.++ ..-+.+-..-+..++.|++.+..|+..|. .|......-+..+...-..+.+.|.....+
T Consensus 8 ~~i~e~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~~~-- 85 (247)
T PF06705_consen 8 ASINERFSGFESDLENEKRQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQISE-- 85 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_pred HHHHHHHHH
Q 028818 114 KLEVFRKTL 122 (203)
Q Consensus 114 KLE~FKk~L 122 (203)
+.+.|+..|
T Consensus 86 ~~~~~~~~l 94 (247)
T PF06705_consen 86 KQEQLQSRL 94 (247)
T ss_pred HHHHHHHHH
No 497
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=50.64 E-value=1.4e+02 Score=24.58 Aligned_cols=74 Identities=19% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 028818 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (203)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (203)
|...+..+..++..+-.++.+=...+.+|+.++...+..-. ...+.+++|..|...|......+...|.-.+.+
T Consensus 5 y~~~L~~~~~~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~----~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~L 78 (157)
T PF04136_consen 5 YLDYLQQYREECDQLLDQTDEILDQLDELQEQYNSVSEKTN----SLHEACEQLLEEQTRLEELAEEISEKLQYFEEL 78 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhH
No 498
>PHA02414 hypothetical protein
Probab=50.62 E-value=25 Score=28.39 Aligned_cols=52 Identities=29% Similarity=0.425 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 028818 61 EKDSRIAELQSQIESIYSSLS-DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (203)
Q Consensus 61 EKd~~i~~Lq~r~s~Le~~L~-~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (203)
++|-.|..|=.|+..|+.-+| +-|-..- ++..|..+-..|-.-|-.|-+|+|
T Consensus 1 ~~D~~in~Lv~~v~~ledKiQ~Gelt~kg-dn~eL~~av~ELRdivvslDKd~A 53 (111)
T PHA02414 1 EMDKEINNLVSQVETLEDKIQEGELTDKG-DNKELEVAVAELRDIVVSLDKDVA 53 (111)
T ss_pred CcchHHHHHHHHHHHHHHHHhcCccccCC-chHHHHHHHHHHHHHHHHhhhHhh
No 499
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.55 E-value=2.8e+02 Score=27.89 Aligned_cols=90 Identities=20% Similarity=0.390 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhh-----hHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH----------------HHHHH
Q 028818 31 DVARKITSIAISTRVSD-----LESEHSALRSQLAEKDSRI---AELQSQIESIYSSLS----------------DKLGQ 86 (203)
Q Consensus 31 dlarkIts~A~atRVs~-----LE~E~~~LR~~LaEKd~~i---~~Lq~r~s~Le~~L~----------------~rL~~ 86 (203)
+|-+||...+++.-+-+ |-.+-+.||.||..=-+.+ .+|..|+..|-..+. +++.+
T Consensus 387 ~Ls~RiLRv~ikqeilr~~G~~L~~~EE~Lr~Kldtll~~ln~Pnq~k~Rl~~L~e~~r~q~~~~~~~~~~~iD~~~~~e 466 (508)
T KOG3091|consen 387 ELSHRILRVMIKQEILRKRGYALTPDEEELRAKLDTLLAQLNAPNQLKARLDELYEILRMQNSQLKLQESYWIDFDKLIE 466 (508)
T ss_pred HHHHHHHHHHHHHHHHhccCCcCCccHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhcchhccccceeechhhhHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 028818 87 AQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (203)
Q Consensus 87 a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSL 126 (203)
..+-...-++--.-|.+.||+..||+. ..|..++
T Consensus 467 ~~e~lt~~~e~l~~Lv~Ilk~d~edi~------~~l~E~~ 500 (508)
T KOG3091|consen 467 MKEHLTQEQEALTKLVNILKGDQEDIK------HQLIEDL 500 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH------HHHHhhH
No 500
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=50.54 E-value=52 Score=24.95 Aligned_cols=46 Identities=24% Similarity=0.455 Sum_probs=0.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQA 89 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~e 89 (203)
|+.+||..|+..+..|+..+ .-+.+|.+|+..+..+|. .+.....+
T Consensus 15 ~vd~KVdaLq~~V~~l~~~~----~~v~~l~~klDa~~~~l~~l~~~V~~I~~ 63 (75)
T PF05531_consen 15 AVDDKVDALQTQVDDLESNL----PDVTELNKKLDAQSAQLTTLNTKVNEIQD 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!