Query 028818
Match_columns 203
No_of_seqs 75 out of 77
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 04:14:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028818.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028818hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u1c_A Tropomyosin alpha-1 cha 97.0 0.035 1.2E-06 41.8 13.9 77 40-116 20-99 (101)
2 1c1g_A Tropomyosin; contractIl 97.0 0.026 8.8E-07 43.7 13.4 42 40-81 3-44 (284)
3 3hnw_A Uncharacterized protein 96.6 0.032 1.1E-06 44.4 11.7 71 37-111 62-132 (138)
4 3u59_A Tropomyosin beta chain; 96.6 0.085 2.9E-06 39.4 13.4 77 40-116 20-99 (101)
5 2dfs_A Myosin-5A; myosin-V, in 96.4 0.038 1.3E-06 55.9 13.3 80 41-122 982-1061(1080)
6 3a7p_A Autophagy protein 16; c 95.9 0.095 3.3E-06 43.0 11.2 71 40-114 72-143 (152)
7 3bas_A Myosin heavy chain, str 95.5 0.23 7.7E-06 36.5 10.8 70 44-113 15-87 (89)
8 2v4h_A NF-kappa-B essential mo 95.1 0.14 4.9E-06 40.0 9.1 64 49-116 44-110 (110)
9 2dfs_A Myosin-5A; myosin-V, in 95.1 0.024 8.2E-07 57.4 5.8 71 45-115 923-996 (1080)
10 2fxo_A Myosin heavy chain, car 94.7 0.94 3.2E-05 34.9 12.8 32 82-113 62-93 (129)
11 2v71_A Nuclear distribution pr 94.4 0.8 2.7E-05 38.5 12.5 41 88-128 94-134 (189)
12 3a7o_A Autophagy protein 16; c 94.3 0.31 1.1E-05 35.8 8.6 61 45-109 13-73 (75)
13 3oja_B Anopheles plasmodium-re 94.3 0.28 9.7E-06 44.3 10.2 41 89-129 544-584 (597)
14 2b9c_A Striated-muscle alpha t 94.3 0.73 2.5E-05 36.9 11.6 75 38-112 47-124 (147)
15 2efr_A General control protein 94.2 1.4 4.8E-05 35.9 13.2 77 40-116 67-146 (155)
16 2fxo_A Myosin heavy chain, car 94.2 1.2 4E-05 34.4 12.2 76 41-116 39-124 (129)
17 3cvf_A Homer-3, homer protein 93.6 0.44 1.5E-05 35.1 8.3 70 46-122 2-71 (79)
18 3m9b_A Proteasome-associated A 93.4 0.06 2E-06 47.2 3.9 69 42-115 23-94 (251)
19 2v66_B Nuclear distribution pr 93.3 1.9 6.6E-05 33.5 12.0 60 40-99 7-73 (111)
20 3i00_A HIP-I, huntingtin-inter 93.2 0.67 2.3E-05 36.2 9.3 53 48-100 20-79 (120)
21 3o0z_A RHO-associated protein 93.0 1.8 6E-05 35.9 12.0 66 47-116 66-138 (168)
22 1i84_S Smooth muscle myosin he 93.0 0.74 2.5E-05 46.5 11.6 75 44-118 858-942 (1184)
23 3oja_B Anopheles plasmodium-re 92.8 1 3.6E-05 40.6 11.3 22 92-113 540-561 (597)
24 3nmd_A CGMP dependent protein 92.8 0.44 1.5E-05 34.8 7.2 45 52-100 21-65 (72)
25 3hnw_A Uncharacterized protein 92.6 1.4 4.7E-05 34.9 10.5 53 65-117 76-131 (138)
26 3s4r_A Vimentin; alpha-helix, 92.5 2.5 8.4E-05 31.4 11.5 71 40-116 20-90 (93)
27 3na7_A HP0958; flagellar bioge 92.4 3.1 0.00011 34.9 13.1 76 25-102 88-163 (256)
28 2q6q_A Spindle POLE BODY compo 92.3 1.1 3.8E-05 32.8 8.7 58 52-113 5-62 (74)
29 4emc_A Monopolin complex subun 92.2 0.5 1.7E-05 40.0 7.8 37 45-81 22-58 (190)
30 3tnu_B Keratin, type II cytosk 92.1 3.2 0.00011 31.8 11.9 21 40-60 40-60 (129)
31 1ic2_A Tropomyosin alpha chain 92.0 2.4 8.1E-05 30.3 10.2 40 42-81 19-58 (81)
32 3jsv_C NF-kappa-B essential mo 92.0 0.84 2.9E-05 34.8 8.1 66 48-117 21-89 (94)
33 3vkg_A Dynein heavy chain, cyt 92.0 1 3.6E-05 50.7 12.0 84 43-126 2014-2132(3245)
34 3na7_A HP0958; flagellar bioge 91.9 3.2 0.00011 34.8 12.6 28 99-126 146-173 (256)
35 1ic2_A Tropomyosin alpha chain 91.8 2.6 8.8E-05 30.1 11.2 42 40-81 3-44 (81)
36 3mq9_A Bone marrow stromal ant 91.6 5.9 0.0002 34.9 14.5 63 55-117 402-464 (471)
37 1l8d_A DNA double-strand break 91.4 3.2 0.00011 30.3 11.6 32 86-117 68-99 (112)
38 4fm3_A Uncharacterized hypothe 91.2 2.8 9.5E-05 32.0 10.3 87 26-112 5-94 (98)
39 3tnu_A Keratin, type I cytoske 91.1 3 0.0001 32.0 10.7 21 40-60 42-62 (131)
40 1gd2_E Transcription factor PA 90.0 0.7 2.4E-05 33.1 5.7 45 60-115 25-69 (70)
41 2v71_A Nuclear distribution pr 89.8 5.7 0.0002 33.3 12.0 67 40-106 60-133 (189)
42 2akf_A Coronin-1A; coiled coil 89.7 0.43 1.5E-05 29.9 3.8 30 45-81 1-30 (32)
43 3nmd_A CGMP dependent protein 89.5 1.3 4.4E-05 32.3 6.8 37 45-81 21-57 (72)
44 1x79_B RAB GTPase binding effe 89.4 1.2 4E-05 34.8 7.0 15 46-60 9-23 (112)
45 2v66_B Nuclear distribution pr 89.2 6.5 0.00022 30.5 11.8 77 52-128 5-81 (111)
46 2e7s_A RAB guanine nucleotide 88.5 2.5 8.5E-05 33.9 8.5 46 25-71 5-53 (135)
47 3tnu_A Keratin, type I cytoske 88.3 7.2 0.00025 29.9 11.7 74 49-122 37-117 (131)
48 1cii_A Colicin IA; bacteriocin 88.1 3.5 0.00012 39.7 10.5 64 50-113 349-415 (602)
49 3a7p_A Autophagy protein 16; c 87.9 8.2 0.00028 31.6 11.4 29 86-114 100-128 (152)
50 2xnx_M M protein, M1-BC1; cell 87.9 0.51 1.7E-05 38.5 4.2 37 86-122 98-134 (146)
51 3tnu_B Keratin, type II cytosk 87.7 7.8 0.00027 29.6 11.7 74 49-122 35-115 (129)
52 2jee_A YIIU; FTSZ, septum, coi 87.4 7.1 0.00024 28.9 10.5 46 64-109 27-75 (81)
53 2wt7_A Proto-oncogene protein 86.8 4.9 0.00017 27.5 8.1 33 86-118 27-59 (63)
54 1x4t_A Hypothetical protein LO 86.5 0.93 3.2E-05 34.5 4.7 48 62-109 30-79 (92)
55 4etp_A Kinesin-like protein KA 86.4 1.1 3.6E-05 40.7 5.9 37 43-79 3-39 (403)
56 3ol1_A Vimentin; structural ge 86.4 9.2 0.00032 29.1 11.1 20 99-118 86-105 (119)
57 1wt6_A Myotonin-protein kinase 86.3 6.3 0.00021 29.3 9.0 56 45-108 16-71 (81)
58 3qh9_A Liprin-beta-2; coiled-c 86.3 1.5 5E-05 32.7 5.5 34 40-73 30-77 (81)
59 1gk4_A Vimentin; intermediate 85.9 7.9 0.00027 27.8 10.8 67 40-113 5-71 (84)
60 3s9g_A Protein hexim1; cyclin 85.8 4.1 0.00014 31.5 8.0 49 40-99 41-89 (104)
61 1go4_E MAD1 (mitotic arrest de 85.5 4.6 0.00016 30.9 8.1 24 86-109 72-95 (100)
62 3mq7_A Bone marrow stromal ant 85.3 4.9 0.00017 31.9 8.4 34 48-81 30-63 (121)
63 2eqb_B RAB guanine nucleotide 85.1 11 0.00037 28.7 11.7 70 43-112 19-92 (97)
64 1l8d_A DNA double-strand break 84.5 9.7 0.00033 27.7 10.6 38 90-127 65-102 (112)
65 1m1j_B Fibrinogen beta chain; 84.5 18 0.00062 33.9 13.3 73 55-127 126-199 (464)
66 1ci6_A Transcription factor AT 84.2 2.8 9.6E-05 28.9 5.9 36 83-118 24-59 (63)
67 3o0z_A RHO-associated protein 83.4 18 0.00061 29.9 13.2 79 44-122 42-123 (168)
68 4ghu_A TNF receptor-associated 83.3 1.6 5.5E-05 35.4 5.1 32 47-78 4-35 (198)
69 3mov_A Lamin-B1; LMNB1, B-type 83.0 6.1 0.00021 29.5 7.8 63 44-113 20-82 (95)
70 1x8y_A Lamin A/C; structural p 82.8 11 0.00039 27.2 9.4 65 41-112 8-72 (86)
71 1jnm_A Proto-oncogene C-JUN; B 82.7 4.7 0.00016 27.4 6.5 34 84-117 24-57 (62)
72 1lwu_C Fibrinogen gamma chain; 82.4 4 0.00014 36.5 7.7 42 40-81 2-43 (323)
73 1t2k_D Cyclic-AMP-dependent tr 82.3 9.2 0.00031 25.8 9.0 32 86-117 26-57 (61)
74 2xdj_A Uncharacterized protein 82.3 12 0.00043 27.3 9.7 9 42-50 5-13 (83)
75 3ghg_A Fibrinogen alpha chain; 82.2 13 0.00044 35.9 11.4 59 68-130 114-193 (562)
76 1x8y_A Lamin A/C; structural p 81.9 8 0.00027 28.0 7.9 66 50-122 3-68 (86)
77 3efg_A Protein SLYX homolog; x 81.9 5.4 0.00018 28.8 6.9 32 100-131 32-63 (78)
78 2xdj_A Uncharacterized protein 81.8 7.8 0.00027 28.4 7.8 43 39-81 23-65 (83)
79 1hjb_A Ccaat/enhancer binding 81.7 7.6 0.00026 28.8 7.8 33 86-118 40-72 (87)
80 4etp_A Kinesin-like protein KA 81.1 4.5 0.00015 36.6 7.6 42 90-131 18-59 (403)
81 3cve_A Homer protein homolog 1 80.4 14 0.00048 26.7 10.1 46 55-104 5-50 (72)
82 1t2k_D Cyclic-AMP-dependent tr 79.9 7.7 0.00026 26.2 6.8 39 61-103 19-57 (61)
83 1yf2_A Type I restriction-modi 79.5 3.3 0.00011 34.5 5.8 39 88-126 378-416 (425)
84 3u1c_A Tropomyosin alpha-1 cha 79.2 17 0.00058 26.9 11.2 42 40-81 6-47 (101)
85 3q8t_A Beclin-1; autophagy, AT 78.6 18 0.00061 26.8 12.3 29 88-116 66-94 (96)
86 4dci_A Uncharacterized protein 78.3 17 0.00058 29.4 9.4 62 62-127 27-101 (150)
87 2jee_A YIIU; FTSZ, septum, coi 78.1 18 0.0006 26.8 8.7 31 86-116 31-61 (81)
88 3mq9_A Bone marrow stromal ant 77.7 36 0.0012 29.9 13.7 17 65-81 398-414 (471)
89 3etw_A Adhesin A; antiparallel 77.7 23 0.0008 27.7 12.9 30 91-120 77-106 (119)
90 3m91_A Proteasome-associated A 76.8 12 0.0004 25.4 6.8 33 65-101 17-49 (51)
91 3htk_A Structural maintenance 76.6 14 0.00047 24.4 7.6 47 46-96 8-54 (60)
92 2oqq_A Transcription factor HY 76.4 5 0.00017 26.6 4.7 21 60-80 13-33 (42)
93 1yf2_A Type I restriction-modi 75.7 4.9 0.00017 33.5 5.8 40 88-127 168-207 (425)
94 2ocy_A RAB guanine nucleotide 75.7 22 0.00075 28.9 9.4 27 27-54 19-45 (154)
95 1gu4_A CAAT/enhancer binding p 75.0 11 0.00039 27.2 6.9 33 86-118 40-72 (78)
96 1gd2_E Transcription factor PA 74.5 18 0.00061 25.7 7.7 39 42-80 28-66 (70)
97 2efr_A General control protein 74.5 29 0.00098 28.1 9.8 33 48-80 26-58 (155)
98 2gkw_A TNF receptor-associated 74.5 4.9 0.00017 32.0 5.3 33 46-78 3-35 (192)
99 2wt7_A Proto-oncogene protein 74.3 16 0.00053 24.9 7.1 40 61-104 20-59 (63)
100 4emc_A Monopolin complex subun 74.1 9 0.00031 32.4 6.9 56 55-114 11-66 (190)
101 3bas_A Myosin heavy chain, str 73.8 23 0.00078 25.6 10.2 61 58-122 15-75 (89)
102 2eqb_B RAB guanine nucleotide 73.6 21 0.00072 27.1 8.3 50 50-103 12-61 (97)
103 2lw1_A ABC transporter ATP-bin 73.4 22 0.00077 25.4 8.5 18 43-60 29-46 (89)
104 2oqq_A Transcription factor HY 73.3 14 0.00047 24.5 6.3 36 67-106 6-41 (42)
105 1deq_A Fibrinogen (alpha chain 72.5 31 0.0011 31.9 10.7 18 38-55 62-79 (390)
106 2w83_C C-JUN-amino-terminal ki 72.3 9.2 0.00031 28.2 5.8 46 35-80 29-74 (77)
107 3he4_A Synzip6; heterodimeric 72.0 2.4 8.1E-05 29.2 2.4 28 87-114 29-56 (56)
108 3kqg_A Langerin, C-type lectin 71.9 7.1 0.00024 29.7 5.4 32 46-81 2-33 (182)
109 3oja_A Leucine-rich immune mol 71.8 52 0.0018 29.0 12.1 59 54-112 414-472 (487)
110 1ydx_A Type I restriction enzy 71.7 6.8 0.00023 33.2 5.8 40 87-126 353-392 (406)
111 2no2_A HIP-I, huntingtin-inter 71.7 30 0.001 26.2 13.6 37 88-124 67-103 (107)
112 3m91_A Proteasome-associated A 71.3 18 0.00061 24.4 6.7 30 86-115 20-49 (51)
113 3m48_A General control protein 71.3 5.3 0.00018 25.3 3.7 27 83-109 1-27 (33)
114 3m9b_A Proteasome-associated A 71.1 4 0.00014 35.7 4.2 41 82-122 54-94 (251)
115 3ghg_A Fibrinogen alpha chain; 70.7 34 0.0012 33.1 10.8 42 40-81 106-148 (562)
116 3u59_A Tropomyosin beta chain; 70.4 29 0.00099 25.4 12.2 42 40-81 6-47 (101)
117 2hy6_A General control protein 70.0 7 0.00024 24.8 4.1 28 83-110 2-29 (34)
118 3u06_A Protein claret segregat 70.0 14 0.00049 33.5 7.9 39 93-131 21-59 (412)
119 1m1j_A Fibrinogen alpha subuni 69.8 65 0.0022 30.7 12.3 45 37-81 59-117 (491)
120 3swy_A Cyclic nucleotide-gated 69.8 22 0.00074 23.7 7.2 43 68-117 2-44 (46)
121 3m0d_C TNF receptor-associated 69.3 20 0.00069 24.6 6.8 47 32-79 17-63 (65)
122 4dyl_A Tyrosine-protein kinase 69.1 32 0.0011 30.5 9.8 89 37-130 303-393 (406)
123 2p22_A Suppressor protein STP2 69.0 24 0.00083 29.1 8.3 34 86-119 60-93 (174)
124 1d7m_A Cortexillin I; coiled-c 68.3 38 0.0013 25.9 12.6 42 35-76 17-58 (101)
125 1uo4_A General control protein 67.8 7 0.00024 24.9 3.7 27 83-109 2-28 (34)
126 3c3g_A Alpha/beta peptide with 67.7 6.9 0.00024 24.7 3.7 26 84-109 2-27 (33)
127 3thf_A Protein shroom; coiled- 67.6 41 0.0014 28.4 9.5 57 65-122 71-127 (190)
128 1lwu_C Fibrinogen gamma chain; 67.5 9.3 0.00032 34.1 6.0 36 43-78 19-54 (323)
129 3e98_A GAF domain of unknown f 66.9 24 0.00081 29.9 8.1 90 15-131 33-134 (252)
130 3fpp_A Macrolide-specific effl 66.7 43 0.0015 27.8 9.6 17 45-61 71-87 (341)
131 3u06_A Protein claret segregat 66.7 15 0.0005 33.5 7.2 56 45-111 5-60 (412)
132 1jnm_A Proto-oncogene C-JUN; B 66.5 8.9 0.0003 26.0 4.4 21 61-81 19-39 (62)
133 3swf_A CGMP-gated cation chann 66.5 29 0.00099 25.3 7.4 51 67-124 3-53 (74)
134 4dk0_A Putative MACA; alpha-ha 66.5 27 0.00092 29.4 8.4 17 45-61 72-88 (369)
135 3vkg_A Dynein heavy chain, cyt 66.3 37 0.0013 38.8 11.4 8 122-129 2078-2085(3245)
136 3m0a_A TNF receptor-associated 66.0 27 0.00094 23.5 7.3 38 41-78 24-61 (66)
137 3he5_A Synzip1; heterodimeric 65.8 19 0.00063 24.1 5.7 35 43-77 10-44 (49)
138 2oxj_A Hybrid alpha/beta pepti 65.7 7.9 0.00027 24.6 3.7 27 83-109 2-28 (34)
139 3c3f_A Alpha/beta peptide with 65.7 7.9 0.00027 24.6 3.7 27 83-109 2-28 (34)
140 3s4r_A Vimentin; alpha-helix, 65.5 38 0.0013 24.9 9.5 59 45-110 32-91 (93)
141 1ydx_A Type I restriction enzy 65.1 11 0.00038 31.9 5.8 39 88-126 166-204 (406)
142 2r2v_A GCN4 leucine zipper; co 65.0 8.8 0.0003 24.4 3.8 27 83-109 2-28 (34)
143 1hjb_A Ccaat/enhancer binding 64.7 18 0.00062 26.7 6.1 19 40-58 40-58 (87)
144 2wvr_A Geminin; DNA replicatio 64.4 49 0.0017 28.3 9.5 54 56-110 107-160 (209)
145 1zxa_A CGMP-dependent protein 64.2 8.3 0.00028 27.6 4.0 24 52-75 27-50 (67)
146 3qne_A Seryl-tRNA synthetase, 64.0 40 0.0014 31.6 9.7 61 67-128 50-110 (485)
147 3ibp_A Chromosome partition pr 63.6 55 0.0019 29.3 10.1 22 93-114 80-101 (302)
148 2wq1_A General control protein 63.4 9.4 0.00032 24.1 3.7 26 84-109 2-27 (33)
149 1dh3_A Transcription factor CR 62.6 30 0.001 23.2 6.4 34 61-112 19-52 (55)
150 1kd8_A GABH AIV, GCN4 acid bas 62.6 8.9 0.0003 24.6 3.5 28 84-111 3-30 (36)
151 2dq0_A Seryl-tRNA synthetase; 62.5 46 0.0016 30.5 9.7 66 63-129 44-109 (455)
152 4b6x_A AVRRPS4, avirulence pro 62.3 38 0.0013 25.4 7.5 57 53-109 25-89 (90)
153 2lw1_A ABC transporter ATP-bin 61.7 41 0.0014 24.0 7.8 23 59-81 24-46 (89)
154 1fzc_C Fibrin; blood coagulati 61.1 7.8 0.00027 34.6 4.2 40 41-80 9-48 (319)
155 2akf_A Coronin-1A; coiled coil 60.8 12 0.00041 23.3 3.8 25 93-117 3-27 (32)
156 3plt_A Sphingolipid long chain 60.0 84 0.0029 27.1 12.2 41 41-81 67-107 (234)
157 2cly_A ATP synthase B chain, m 59.7 79 0.0027 26.7 10.8 50 48-97 82-137 (214)
158 2w6a_A ARF GTPase-activating p 59.4 40 0.0014 23.9 6.8 34 84-117 22-55 (63)
159 1nfn_A Apolipoprotein E3; lipi 59.1 38 0.0013 27.5 7.7 27 98-124 134-161 (191)
160 1wlq_A Geminin; coiled-coil; 2 58.9 53 0.0018 24.4 8.5 51 57-108 31-81 (83)
161 1m1j_C Fibrinogen gamma chain; 58.8 92 0.0032 28.5 11.0 32 40-71 35-66 (409)
162 2bni_A General control protein 58.6 13 0.00045 23.6 3.7 27 83-109 2-28 (34)
163 1kd8_B GABH BLL, GCN4 acid bas 58.4 21 0.00073 22.9 4.7 13 44-56 2-14 (36)
164 3efg_A Protein SLYX homolog; x 58.3 26 0.0009 25.1 5.9 50 64-117 14-63 (78)
165 1dh3_A Transcription factor CR 57.9 39 0.0013 22.6 7.2 12 45-56 24-35 (55)
166 3swk_A Vimentin; cytoskeleton, 57.8 51 0.0017 23.8 9.3 12 101-112 68-79 (86)
167 2v4h_A NF-kappa-B essential mo 57.8 43 0.0015 26.1 7.4 30 51-80 25-54 (110)
168 2xv5_A Lamin-A/C; structural p 57.7 49 0.0017 23.6 7.7 44 65-112 6-49 (74)
169 2dgc_A Protein (GCN4); basic d 57.3 17 0.00059 25.0 4.6 34 61-112 27-60 (63)
170 1gk4_A Vimentin; intermediate 57.3 49 0.0017 23.5 9.5 50 73-122 17-66 (84)
171 2yy0_A C-MYC-binding protein; 56.8 25 0.00084 23.7 5.2 27 50-76 19-45 (53)
172 1zhc_A Hypothetical protein HP 56.5 21 0.00071 25.4 5.0 61 54-115 7-70 (76)
173 1fxk_C Protein (prefoldin); ar 56.4 30 0.001 25.8 6.2 60 16-77 70-129 (133)
174 3iv1_A Tumor susceptibility ge 56.4 56 0.0019 23.9 9.8 60 53-116 14-73 (78)
175 2no2_A HIP-I, huntingtin-inter 55.8 63 0.0022 24.3 13.7 66 52-117 17-82 (107)
176 3oa7_A Head morphogenesis prot 55.7 26 0.00088 30.0 6.3 55 61-119 27-81 (206)
177 3oja_A Leucine-rich immune mol 55.6 1.1E+02 0.0037 26.9 13.8 44 25-69 350-393 (487)
178 3viq_B Mating-type switching p 55.6 33 0.0011 25.5 6.1 65 46-116 4-68 (85)
179 2d4y_A HAP1, flagellar HOOK-as 55.5 1.1E+02 0.0039 27.3 10.9 87 19-108 56-148 (463)
180 1ca9_A TRAF2, protein (TNF rec 54.8 18 0.00062 28.4 5.0 32 46-77 6-37 (192)
181 4afl_A P29ING4, inhibitor of g 54.7 58 0.002 23.6 10.7 76 41-116 9-100 (104)
182 3he5_B Synzip2; heterodimeric 54.3 36 0.0012 23.0 5.6 29 89-117 17-45 (52)
183 4aj5_1 SKA3, spindle and kinet 54.1 72 0.0025 24.5 11.3 73 46-118 16-96 (101)
184 1m1j_C Fibrinogen gamma chain; 53.9 1.3E+02 0.0043 27.6 11.1 17 44-60 49-65 (409)
185 1gu4_A CAAT/enhancer binding p 53.9 20 0.00067 26.0 4.6 14 42-55 42-55 (78)
186 3ghg_B Fibrinogen beta chain; 53.9 1.2E+02 0.0042 28.5 11.1 88 40-127 92-194 (461)
187 2aze_B Transcription factor E2 52.9 22 0.00076 26.8 5.0 32 41-72 4-35 (106)
188 2qyw_A Vesicle transport throu 52.7 66 0.0023 23.6 9.5 20 97-116 79-98 (102)
189 4h8s_A DCC-interacting protein 52.6 42 0.0014 29.2 7.4 21 41-61 42-62 (407)
190 1kd8_B GABH BLL, GCN4 acid bas 52.5 23 0.00078 22.7 4.2 28 83-110 2-29 (36)
191 2e7s_A RAB guanine nucleotide 52.3 19 0.00064 28.8 4.7 85 40-128 36-124 (135)
192 3q8t_A Beclin-1; autophagy, AT 52.2 68 0.0023 23.6 11.7 24 86-109 50-73 (96)
193 4h22_A Leucine-rich repeat fli 52.2 78 0.0027 24.3 9.4 20 51-70 31-50 (103)
194 3c9i_A Tail needle protein GP2 51.9 1.2E+02 0.0041 26.3 10.6 35 82-116 112-146 (242)
195 3iox_A AGI/II, PA; alpha helix 51.8 1.7E+02 0.0057 28.0 14.8 67 29-97 15-81 (497)
196 3m48_A General control protein 51.7 21 0.00071 22.5 3.8 12 44-55 1-12 (33)
197 2xnx_M M protein, M1-BC1; cell 51.5 96 0.0033 25.1 9.3 32 86-117 77-108 (146)
198 2q13_A DCC-interacting protein 51.4 71 0.0024 27.5 8.6 21 41-61 19-39 (385)
199 2fcw_A Alpha-2-macroglobulin r 51.1 84 0.0029 24.3 11.5 72 49-124 23-103 (109)
200 1vcs_A Vesicle transport throu 50.8 44 0.0015 24.6 6.3 54 60-117 34-88 (102)
201 3bbp_D GRIP and coiled-coil do 50.8 12 0.0004 27.3 2.9 31 82-112 36-66 (71)
202 1gk6_A Vimentin; intermediate 50.6 43 0.0015 22.6 5.7 38 68-109 4-41 (59)
203 3mud_A DNA repair protein XRCC 49.6 76 0.0026 26.3 8.1 41 53-97 124-164 (175)
204 1ci6_A Transcription factor AT 49.5 59 0.002 22.1 6.8 36 62-101 21-56 (63)
205 2i1j_A Moesin; FERM, coiled-co 49.1 10 0.00035 35.8 3.1 39 40-78 339-377 (575)
206 2wt7_B Transcription factor MA 49.0 53 0.0018 24.5 6.4 36 64-103 48-83 (90)
207 1wle_A Seryl-tRNA synthetase; 48.8 1.7E+02 0.0058 27.2 11.5 66 63-129 83-156 (501)
208 3d5a_X RF1, peptide chain rele 48.5 1.3E+02 0.0046 27.2 10.2 82 44-125 4-99 (354)
209 2ke4_A CDC42-interacting prote 48.3 82 0.0028 23.4 7.8 27 90-116 63-89 (98)
210 1kd8_A GABH AIV, GCN4 acid bas 48.3 39 0.0013 21.7 4.7 12 44-55 2-13 (36)
211 3ghg_C Fibrinogen gamma chain; 47.9 60 0.002 30.0 7.9 34 40-73 35-68 (411)
212 1uii_A Geminin; human, DNA rep 47.8 41 0.0014 25.0 5.6 31 86-116 43-73 (83)
213 4h22_A Leucine-rich repeat fli 47.5 93 0.0032 23.9 8.0 55 57-115 19-77 (103)
214 3trt_A Vimentin; cytoskeleton, 47.3 65 0.0022 22.0 6.6 9 103-111 63-71 (77)
215 2q12_A DIP13 alpha, DCC-intera 47.3 1.1E+02 0.0039 24.8 10.2 86 41-127 19-108 (265)
216 2ke4_A CDC42-interacting prote 47.1 86 0.0029 23.3 7.4 29 94-122 60-88 (98)
217 1zme_C Proline utilization tra 46.7 10 0.00035 25.0 2.0 22 40-61 48-69 (70)
218 4dac_A Computationally designe 46.6 15 0.00051 22.1 2.5 18 100-117 5-22 (28)
219 1gk6_A Vimentin; intermediate 46.4 64 0.0022 21.7 7.1 41 41-81 5-45 (59)
220 2yy0_A C-MYC-binding protein; 46.4 35 0.0012 22.9 4.6 27 89-115 19-45 (53)
221 1ztm_A Fusion glycoprotein; fu 45.9 65 0.0022 30.5 8.0 77 30-116 102-180 (490)
222 1f5n_A Interferon-induced guan 45.9 73 0.0025 30.3 8.4 22 59-80 482-503 (592)
223 3rrk_A V-type ATPase 116 kDa s 45.8 1.1E+02 0.0038 25.9 8.9 22 98-119 257-278 (357)
224 2wq1_A General control protein 45.2 34 0.0012 21.5 4.1 12 44-55 1-12 (33)
225 2zdi_C Prefoldin subunit alpha 45.0 27 0.00093 26.9 4.5 62 15-78 79-140 (151)
226 2wvr_A Geminin; DNA replicatio 45.0 77 0.0026 27.1 7.5 19 84-102 110-128 (209)
227 4b4t_K 26S protease regulatory 44.6 38 0.0013 30.8 6.1 33 85-117 52-84 (428)
228 2vrs_A Sigma-C capsid protein; 44.4 29 0.00098 29.8 4.8 28 89-116 11-38 (211)
229 1zxa_A CGMP-dependent protein 44.4 43 0.0015 23.8 5.1 25 53-77 14-38 (67)
230 3okg_A Restriction endonucleas 44.3 41 0.0014 28.0 5.8 16 111-126 392-407 (412)
231 1yke_B RNA polymerase II holoe 44.2 1.2E+02 0.0041 24.1 9.4 79 27-113 52-130 (151)
232 1gmj_A ATPase inhibitor; coile 44.2 95 0.0033 23.0 9.0 60 37-110 18-79 (84)
233 3qh9_A Liprin-beta-2; coiled-c 43.9 95 0.0033 22.9 8.1 45 65-109 27-74 (81)
234 2dgc_A Protein (GCN4); basic d 43.8 43 0.0015 23.0 4.9 16 45-60 32-47 (63)
235 1ytz_T Troponin T; muscle, THI 43.6 41 0.0014 25.6 5.2 37 40-76 53-89 (107)
236 1joc_A EEA1, early endosomal a 43.1 78 0.0027 24.0 6.7 28 39-66 7-34 (125)
237 2w6a_A ARF GTPase-activating p 42.9 87 0.003 22.2 8.0 45 54-102 17-61 (63)
238 4fla_A Regulation of nuclear P 42.8 1.3E+02 0.0043 24.0 9.4 19 52-70 88-106 (152)
239 1bg1_A Protein (transcription 42.7 99 0.0034 29.9 8.8 40 41-80 11-50 (596)
240 1lq7_A Alpha3W; three helix bu 42.2 28 0.00095 24.5 3.7 12 44-55 3-14 (67)
241 3he4_A Synzip6; heterodimeric 42.1 36 0.0012 23.3 4.1 27 91-117 26-52 (56)
242 1wlq_A Geminin; coiled-coil; 2 41.8 51 0.0017 24.5 5.2 32 86-117 35-66 (83)
243 2w6b_A RHO guanine nucleotide 41.7 86 0.0029 21.8 6.9 40 87-126 15-54 (56)
244 1fmh_A General control protein 41.2 43 0.0015 20.8 4.0 21 59-79 10-30 (33)
245 3mq7_A Bone marrow stromal ant 41.0 1.3E+02 0.0045 23.7 12.4 49 52-104 55-107 (121)
246 3lss_A Seryl-tRNA synthetase; 41.0 2.3E+02 0.0078 26.4 12.0 40 89-128 99-143 (484)
247 1wle_A Seryl-tRNA synthetase; 40.8 2.3E+02 0.0078 26.4 11.2 35 97-131 117-151 (501)
248 2olt_A Hypothetical protein; s 40.6 1.3E+02 0.0046 23.7 10.7 15 18-32 7-21 (227)
249 1nkp_B MAX protein, MYC proto- 40.5 86 0.0029 21.8 6.2 6 52-57 21-26 (83)
250 2yko_A LINE-1 ORF1P; RNA-bindi 40.3 57 0.0019 28.2 6.1 10 115-124 71-80 (233)
251 2pms_C Pneumococcal surface pr 40.2 42 0.0014 26.5 4.9 25 92-116 64-88 (125)
252 1ykh_B RNA polymerase II holoe 40.2 1.3E+02 0.0043 23.3 9.5 78 27-112 52-129 (132)
253 3ter_A Mammalian stromal inter 40.0 60 0.002 26.0 5.8 29 82-110 59-87 (136)
254 2zxx_A Geminin; coiled-coil, c 39.9 1.1E+02 0.0037 22.4 7.8 20 61-80 31-50 (79)
255 3hhm_B NISH2 P85alpha; PI3KCA, 39.4 1.1E+02 0.0038 27.4 8.2 41 40-80 209-249 (373)
256 3cvf_A Homer-3, homer protein 39.3 1.1E+02 0.0037 22.3 9.4 40 42-81 12-51 (79)
257 1t6f_A Geminin; coiled-coil, c 39.3 53 0.0018 21.1 4.4 22 51-72 8-29 (37)
258 2zxx_A Geminin; coiled-coil, c 38.7 82 0.0028 23.0 5.9 23 86-108 31-53 (79)
259 2zvf_A Alanyl-tRNA synthetase; 38.7 45 0.0015 25.5 4.8 30 86-115 29-58 (171)
260 2aze_A Transcription factor DP 38.5 65 0.0022 26.3 5.9 35 43-77 5-39 (155)
261 3k29_A Putative uncharacterize 38.3 1.7E+02 0.0058 24.2 16.2 60 22-81 2-65 (169)
262 2yo3_A General control protein 38.1 65 0.0022 28.4 6.2 39 43-81 216-254 (268)
263 1uo4_A General control protein 37.9 48 0.0017 21.0 3.9 12 44-55 2-13 (34)
264 2wuj_A Septum site-determining 37.8 30 0.001 23.2 3.2 26 86-111 31-56 (57)
265 2dq0_A Seryl-tRNA synthetase; 37.2 1.4E+02 0.0047 27.3 8.6 34 98-131 71-104 (455)
266 1j1d_C Troponin I, TNI; THIN f 37.0 69 0.0024 25.4 5.7 39 40-78 69-107 (133)
267 1gqe_A Release factor 2, RF2; 37.0 1.8E+02 0.0062 26.4 9.2 86 32-117 14-115 (365)
268 3sjb_C Golgi to ER traffic pro 36.8 1.3E+02 0.0046 22.6 7.3 62 40-108 20-86 (93)
269 2dq3_A Seryl-tRNA synthetase; 36.3 51 0.0017 29.8 5.5 41 89-129 68-108 (425)
270 1nlw_A MAD protein, MAX dimeri 36.2 1E+02 0.0035 21.8 6.1 21 92-112 57-77 (80)
271 1ik9_A DNA repair protein XRCC 36.0 1.9E+02 0.0064 24.1 13.6 71 45-128 134-204 (213)
272 3fx0_A NF-kappa-B essential mo 35.9 24 0.00081 27.0 2.7 55 49-107 37-94 (96)
273 1ses_A Seryl-tRNA synthetase; 35.8 1.5E+02 0.0052 26.6 8.5 41 89-129 64-104 (421)
274 3mtu_E Head morphogenesis prot 35.7 1.3E+02 0.0044 22.0 7.8 45 61-108 27-74 (77)
275 1wlo_A SUFE protein; structura 35.6 20 0.00069 28.0 2.4 46 11-61 87-132 (136)
276 2b5u_A Colicin E3; high resolu 35.5 1.7E+02 0.0058 28.2 9.0 62 20-81 289-352 (551)
277 1y1u_A Signal transducer and a 35.4 2.7E+02 0.0093 26.7 10.6 45 37-81 6-50 (585)
278 3cl3_D NF-kappa-B essential mo 35.4 91 0.0031 24.9 6.1 39 40-81 34-72 (130)
279 3mov_A Lamin-B1; LMNB1, B-type 35.4 1.3E+02 0.0045 22.1 9.2 38 85-122 40-77 (95)
280 2ve7_A Kinetochore protein HEC 35.3 45 0.0016 29.0 4.8 45 37-81 151-202 (315)
281 3kpe_A Fusion glycoprotein F0; 35.3 1E+02 0.0035 20.8 6.9 35 47-81 1-35 (51)
282 2ocy_A RAB guanine nucleotide 35.0 1.8E+02 0.0061 23.5 13.9 18 43-60 51-68 (154)
283 3swy_A Cyclic nucleotide-gated 34.9 91 0.0031 20.6 5.2 17 43-59 5-21 (46)
284 3swf_A CGMP-gated cation chann 34.8 1.1E+02 0.0039 22.1 6.1 16 43-58 7-22 (74)
285 2ve7_A Kinetochore protein HEC 34.8 74 0.0025 27.7 6.1 23 48-70 183-205 (315)
286 3c9i_A Tail needle protein GP2 34.7 2.3E+02 0.0077 24.6 14.5 98 19-116 28-132 (242)
287 3tq2_A KE1; parallel three hel 34.6 86 0.0029 19.7 4.9 30 45-74 3-32 (36)
288 3ra3_B P2F; coiled coil domain 34.3 34 0.0012 20.6 2.7 18 53-70 3-20 (28)
289 1ni7_A ER75, hypothetical prot 34.2 6.3 0.00022 31.7 -0.8 50 11-64 100-149 (155)
290 1pl5_A Regulatory protein SIR4 34.1 76 0.0026 25.1 5.5 43 27-69 73-128 (142)
291 1no4_A Late, head morphogenesi 34.0 1.5E+02 0.0051 22.3 8.1 51 60-114 22-72 (97)
292 2p22_C Protein SRN2; endosome, 34.0 2E+02 0.0067 23.7 10.1 28 100-127 125-152 (192)
293 3c3f_A Alpha/beta peptide with 33.7 66 0.0023 20.3 4.1 11 44-54 2-12 (34)
294 3l4q_C Phosphatidylinositol 3- 33.6 2E+02 0.0067 23.6 9.7 57 40-107 100-156 (170)
295 1x79_B RAB GTPase binding effe 33.5 1.6E+02 0.0056 22.6 12.6 31 51-81 46-76 (112)
296 4e61_A Protein BIM1; EB1-like 33.1 1.1E+02 0.0039 23.4 6.2 42 48-89 9-53 (106)
297 1f5n_A Interferon-induced guan 33.1 2.8E+02 0.0097 26.2 10.2 15 102-116 566-580 (592)
298 2xus_A Breast cancer metastasi 32.9 72 0.0025 21.5 4.4 29 44-81 14-42 (49)
299 2j5u_A MREC protein; bacterial 32.8 23 0.0008 29.9 2.5 35 86-120 23-57 (255)
300 1bf5_A Signal transducer and a 32.6 2.9E+02 0.01 26.6 10.3 33 40-72 13-45 (575)
301 3m0a_A TNF receptor-associated 32.5 1.1E+02 0.0038 20.4 9.4 60 48-111 3-62 (66)
302 1nyh_A Regulatory protein SIR4 32.5 92 0.0031 25.2 5.8 43 27-69 97-152 (166)
303 2avr_X Adhesion A; antiparalle 32.4 1.8E+02 0.0061 22.7 9.7 23 40-62 6-28 (119)
304 1t3j_A Mitofusin 1; coiled coi 32.3 1.6E+02 0.0055 22.2 8.2 18 63-80 53-70 (96)
305 1gqe_A Release factor 2, RF2; 32.2 2.9E+02 0.0099 25.1 12.0 15 43-57 9-23 (365)
306 2k48_A Nucleoprotein; viral pr 32.2 1.8E+02 0.006 22.5 8.2 16 66-81 37-52 (107)
307 3a5t_A Transcription factor MA 31.9 3.4 0.00012 31.8 -2.6 22 9-30 3-24 (107)
308 4ad8_A DNA repair protein RECN 31.1 2.2E+02 0.0075 25.5 8.7 9 25-33 162-170 (517)
309 2rr9_C Putative uncharacterize 31.1 1.2E+02 0.004 20.2 5.3 9 27-35 4-12 (46)
310 1s94_A S-syntaxin; three helix 31.0 1.9E+02 0.0063 22.5 8.0 20 40-59 40-59 (180)
311 2zdi_C Prefoldin subunit alpha 31.0 1.8E+02 0.006 22.2 8.1 41 87-127 96-136 (151)
312 1deq_A Fibrinogen (alpha chain 30.9 2.4E+02 0.0082 26.1 9.0 23 91-113 136-158 (390)
313 3qwe_A GMIP, GEM-interacting p 30.8 2.7E+02 0.0091 24.2 9.3 66 59-126 172-237 (279)
314 1ez3_A Syntaxin-1A; three heli 30.7 1.5E+02 0.0052 21.3 8.1 21 40-60 9-29 (127)
315 2y7c_A Type-1 restriction enzy 30.5 94 0.0032 26.1 5.9 21 106-126 184-204 (464)
316 2lf0_A Uncharacterized protein 30.0 1.4E+02 0.0049 23.6 6.4 50 65-114 11-69 (123)
317 1ik9_A DNA repair protein XRCC 29.9 2.4E+02 0.0082 23.4 12.0 88 24-112 117-209 (213)
318 2d4y_A HAP1, flagellar HOOK-as 29.6 1.8E+02 0.0062 26.0 7.9 58 55-115 65-122 (463)
319 1yvl_A Signal transducer and a 29.6 2.7E+02 0.0093 27.3 9.6 38 41-78 135-172 (683)
320 2dnx_A Syntaxin-12; snare, HAB 29.5 1.8E+02 0.0063 21.9 14.3 91 25-116 8-118 (130)
321 2qm4_A Non-homologous END-join 29.2 56 0.0019 27.8 4.3 39 32-71 133-171 (235)
322 1yke_B RNA polymerase II holoe 29.1 2.1E+02 0.0073 22.6 8.1 73 47-122 54-129 (151)
323 1fxk_C Protein (prefoldin); ar 29.0 1.7E+02 0.006 21.5 11.8 40 89-128 88-127 (133)
324 3t97_B Nuclear pore complex pr 28.9 1.4E+02 0.0046 21.2 5.5 37 42-78 9-45 (65)
325 1avy_A Fibritin, gpwac M; bact 28.8 1.2E+02 0.004 22.2 5.2 18 43-60 8-25 (74)
326 2y7c_A Type-1 restriction enzy 28.6 2.6E+02 0.0089 23.4 8.4 22 14-36 360-385 (464)
327 1m1j_B Fibrinogen beta chain; 28.4 3.7E+02 0.013 25.1 13.2 41 41-81 98-138 (464)
328 2dq3_A Seryl-tRNA synthetase; 28.4 1.2E+02 0.0042 27.2 6.6 30 100-129 72-101 (425)
329 3q0x_A Centriole protein; cent 28.4 1.4E+02 0.0047 25.5 6.6 52 32-83 169-227 (228)
330 2xv5_A Lamin-A/C; structural p 28.3 1.6E+02 0.0054 20.9 8.0 25 48-72 3-27 (74)
331 2er8_A Regulatory protein Leu3 27.8 59 0.002 21.4 3.4 16 65-80 50-65 (72)
332 3lay_A Zinc resistance-associa 27.6 1.5E+02 0.0051 24.1 6.4 63 45-107 80-142 (175)
333 2wg5_A General control protein 27.5 61 0.0021 24.1 3.8 20 90-109 15-34 (109)
334 4e61_A Protein BIM1; EB1-like 27.2 2.1E+02 0.0072 21.9 9.9 28 53-80 7-34 (106)
335 1rtm_1 Mannose-binding protein 27.2 38 0.0013 24.8 2.6 19 41-59 2-20 (149)
336 3tul_A Cell invasion protein S 27.0 2.6E+02 0.0089 22.9 8.1 24 58-81 70-93 (158)
337 1j1e_C Troponin I, TNI; THIN f 27.0 1.2E+02 0.004 25.2 5.7 41 40-80 69-109 (180)
338 3tso_C RAB11 family-interactin 26.9 1.1E+02 0.0038 22.3 4.9 30 48-77 19-48 (75)
339 3t98_B Nucleoporin NUP58/NUP45 26.7 48 0.0016 24.6 3.0 20 39-58 61-80 (93)
340 2gkw_A TNF receptor-associated 26.6 82 0.0028 24.8 4.6 13 68-80 4-16 (192)
341 3q4f_C DNA repair protein XRCC 26.4 93 0.0032 26.1 5.0 22 82-103 161-182 (186)
342 1t6f_A Geminin; coiled-coil, c 26.4 1.3E+02 0.0045 19.3 5.1 12 86-97 4-15 (37)
343 3s9g_A Protein hexim1; cyclin 26.0 2.3E+02 0.0077 21.8 8.8 41 83-123 45-85 (104)
344 3frt_A Charged multivesicular 25.9 1E+02 0.0035 25.9 5.3 20 105-124 56-75 (218)
345 1uii_A Geminin; human, DNA rep 25.7 2E+02 0.0069 21.2 6.7 24 57-80 39-62 (83)
346 1zbt_A RF-1, peptide chain rel 25.6 1.2E+02 0.004 27.8 5.9 24 100-123 91-115 (371)
347 2qyw_A Vesicle transport throu 25.6 2E+02 0.0068 21.0 9.7 75 42-122 14-94 (102)
348 3cve_A Homer protein homolog 1 25.4 1.9E+02 0.0064 20.7 9.9 40 42-81 6-45 (72)
349 4fi5_A Nucleoprotein; structur 25.4 2.4E+02 0.0082 21.9 8.1 25 66-90 24-51 (113)
350 1flk_A TNF receptor associated 25.3 73 0.0025 25.9 4.2 7 114-120 81-87 (228)
351 3qne_A Seryl-tRNA synthetase, 25.3 4.2E+02 0.014 24.7 10.1 32 99-130 74-105 (485)
352 3htk_A Structural maintenance 25.1 1.4E+02 0.0049 19.3 8.7 22 88-109 32-53 (60)
353 2ve7_C Kinetochore protein NUF 24.5 1.5E+02 0.0051 25.0 6.1 29 84-112 150-178 (250)
354 3m0d_C TNF receptor-associated 24.3 1.7E+02 0.0058 19.8 9.0 15 64-78 6-20 (65)
355 2xzr_A Immunoglobulin-binding 24.1 2.5E+02 0.0085 21.7 12.5 79 40-118 17-105 (114)
356 3ra3_A P1C; coiled coil domain 24.1 1.1E+02 0.0037 18.3 3.6 24 93-116 4-27 (28)
357 4adz_A CSOR; transcription, co 24.1 2.7E+02 0.0093 22.1 8.8 43 38-81 51-93 (136)
358 3a1q_C Ubiquitin interaction m 24.1 1.6E+02 0.0055 19.5 5.3 8 27-34 7-14 (45)
359 2p22_A Suppressor protein STP2 23.8 3E+02 0.01 22.5 10.4 46 72-117 39-84 (174)
360 1ykh_B RNA polymerase II holoe 23.7 2.5E+02 0.0085 21.5 8.6 67 47-116 54-123 (132)
361 1urq_A M-tomosyn isoform; tran 23.7 1.8E+02 0.0061 19.9 8.0 42 40-81 8-49 (63)
362 1bf5_A Signal transducer and a 23.7 5E+02 0.017 25.0 10.5 38 44-81 3-40 (575)
363 3g0m_A Cysteine desulfuration 23.6 18 0.0006 28.5 0.1 45 11-59 93-137 (141)
364 4e8u_A Putative uncharacterize 23.5 74 0.0025 26.2 3.8 22 52-73 150-171 (172)
365 3g67_A Methyl-accepting chemot 23.2 3.1E+02 0.011 22.5 12.5 27 86-112 50-76 (213)
366 1zhc_A Hypothetical protein HP 23.1 61 0.0021 22.9 2.9 28 50-77 17-44 (76)
367 3ni0_A Bone marrow stromal ant 22.9 2.6E+02 0.0087 21.4 11.1 65 48-116 23-87 (99)
368 3a7o_A Autophagy protein 16; c 22.5 2.3E+02 0.0078 20.6 8.9 43 37-79 19-61 (75)
369 2ic9_A Nucleocapsid protein; h 22.4 2.6E+02 0.0087 21.2 7.9 25 66-90 7-34 (96)
370 3pe0_A Plectin; cytoskeleton, 22.2 3.5E+02 0.012 22.7 8.0 47 67-118 83-129 (283)
371 1fzc_B Fibrin; blood coagulati 22.1 46 0.0016 29.6 2.5 25 101-125 35-59 (328)
372 3gp4_A Transcriptional regulat 21.9 2.6E+02 0.009 21.1 9.1 13 27-39 43-55 (142)
373 2oto_A M protein; helical coil 21.6 2.8E+02 0.0095 21.3 11.7 72 47-122 26-98 (155)
374 3etw_A Adhesin A; antiparallel 20.8 3E+02 0.01 21.3 9.6 20 39-58 5-24 (119)
375 2oa5_A Hypothetical protein BQ 20.8 2.9E+02 0.0098 21.4 6.5 20 41-60 13-32 (110)
376 1tu3_F RAB GTPase binding effe 20.6 55 0.0019 24.1 2.2 35 89-123 5-39 (79)
377 4g63_A Cytosolic IMP-GMP speci 20.6 80 0.0027 29.4 3.9 10 46-55 325-334 (470)
378 3kin_B Kinesin heavy chain; mo 20.6 1.7E+02 0.0057 22.0 5.1 46 36-81 60-113 (117)
379 4f61_I Stathmin-like domain R4 20.5 3.5E+02 0.012 23.4 7.6 26 49-74 110-135 (240)
380 3ck6_A Putative membrane trans 20.4 3.2E+02 0.011 21.6 8.3 17 65-81 172-188 (252)
381 3w03_C DNA repair protein XRCC 20.0 2.3E+02 0.008 23.4 6.2 24 83-106 153-176 (184)
No 1
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=96.99 E-value=0.035 Score=41.79 Aligned_cols=77 Identities=16% Similarity=0.212 Sum_probs=63.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (203)
.+.-|+..+|.++..+.+....++..|..|+.|+..++..|- .+|..+.+....-.+-...-...|..|||-+.-||
T Consensus 20 ~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 20 NALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 567788899999999999999999999999999999999987 66776666655555555666678999999887776
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.97 E-value=0.026 Score=43.73 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=21.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
+|..+|..|+.++..+...+.+-...+..++.++..++..+.
T Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~ 44 (284)
T 1c1g_A 3 AIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELV 44 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555444444443
No 3
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=96.63 E-value=0.032 Score=44.38 Aligned_cols=71 Identities=14% Similarity=0.212 Sum_probs=58.9
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028818 37 TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRD 111 (203)
Q Consensus 37 ts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rD 111 (203)
++.=++.-.-++..+...|++++.+++..|++|...+.++...+- .+.+++.+|.++++.|...+++|...
T Consensus 62 aALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e----~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 62 MYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAE----SSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555677777888899999999999999999999988887776654 88888888888888888888888643
No 4
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=96.62 E-value=0.085 Score=39.37 Aligned_cols=77 Identities=16% Similarity=0.238 Sum_probs=63.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (203)
.+.-|+..+|.++..+......++..|..|+.|+..++..+- .+|..+.+....-.+....-...|..|||-+.-||
T Consensus 20 ~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllE 99 (101)
T 3u59_A 20 NAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 567788889999999999999999999999999999999987 67776666665555566666778999999887664
No 5
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.39 E-value=0.038 Score=55.90 Aligned_cols=80 Identities=18% Similarity=0.318 Sum_probs=38.1
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 028818 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (203)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk 120 (203)
...+|..||.|+..|+.++.+-..+..+|++++..+...|+.++....+++.+|..+.+.|...+.+.+.+.+ |.+|.
T Consensus 982 ~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~~~~--~~~~~ 1059 (1080)
T 2dfs_A 982 ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEIT--ETMEK 1059 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 3345555555555555555555555555555555555544444444444444444444444433333333222 23555
Q ss_pred HH
Q 028818 121 TL 122 (203)
Q Consensus 121 ~L 122 (203)
.+
T Consensus 1060 ~~ 1061 (1080)
T 2dfs_A 1060 KL 1061 (1080)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 6
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=95.94 E-value=0.095 Score=43.00 Aligned_cols=71 Identities=18% Similarity=0.216 Sum_probs=52.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNT-VRKLQRDVSK 114 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~T-vKkL~rDvaK 114 (203)
.+.+-...|+.++..|...+.+|...+..|++-+.+|..++. .+.+...+|++||+.|... +++-+++-.+
T Consensus 72 ~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n----~lE~kl~kLq~EN~~LV~RWM~rk~qEAe~ 143 (152)
T 3a7p_A 72 ILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENN----VLQQKLSDLKKEHSQLVARWLKKTEKETEA 143 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566667777777777777888888888888888777776 8889999999999988764 4455555444
No 7
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=95.50 E-value=0.23 Score=36.52 Aligned_cols=70 Identities=20% Similarity=0.269 Sum_probs=60.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 028818 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (203)
Q Consensus 44 RVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (203)
-+..++.++..|+..+..-.....+|+.+...|..+.. ..+..+.+.+.+|.+.+..|...++.|+..|.
T Consensus 15 Em~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 15 EMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45678999999999999888889999999888887766 44889999999999999999999999987653
No 8
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=95.14 E-value=0.14 Score=40.04 Aligned_cols=64 Identities=19% Similarity=0.345 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028818 49 ESEHSALRSQLAEKDS---RIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (203)
Q Consensus 49 E~E~~~LR~~LaEKd~---~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (203)
..++..|++.++.++. .|.-|+.++.-....+. .=+.+-++++.|+..|...+..|+|++.+|+
T Consensus 44 q~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~----aERadREkl~~eKe~L~~ql~~Lq~q~~~l~ 110 (110)
T 2v4h_A 44 QELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQ----AERHAREKLVEKKEYLQEQLEQLQREFNKLK 110 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----cchhhHHHHHhHHHHHHHHHHHHHHHHHhcC
Confidence 3566667776666665 45555555555544444 5556678999999999999999999998873
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.11 E-value=0.024 Score=57.38 Aligned_cols=71 Identities=23% Similarity=0.299 Sum_probs=21.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028818 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (203)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (203)
..+||.++..|..+|.++.+...+|++++..++..+. ..|+...++..++.+|+..+.+.|+.|..++++|
T Consensus 923 ~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l 996 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKL 996 (1080)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888887777777777666655555444 4444444444455555555555555444444443
No 10
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=94.74 E-value=0.94 Score=34.95 Aligned_cols=32 Identities=22% Similarity=0.410 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 028818 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (203)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (203)
+.+..+.+...+|...+..|...++-|+.++.
T Consensus 62 ~~l~e~EE~~~~L~~~k~eLe~~l~el~~rle 93 (129)
T 2fxo_A 62 DNLADAEERCDQLIKNKIQLEAKVKEMNKRLE 93 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443
No 11
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=94.40 E-value=0.8 Score=38.48 Aligned_cols=41 Identities=27% Similarity=0.368 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 028818 88 QADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (203)
Q Consensus 88 ~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~ 128 (203)
..+...|..++..|...++.|...-.-||+=.|...-||.|
T Consensus 94 q~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD 134 (189)
T 2v71_A 94 EDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLED 134 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHH
Confidence 44445555555566666666666666666666666666554
No 12
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=94.33 E-value=0.31 Score=35.81 Aligned_cols=61 Identities=18% Similarity=0.192 Sum_probs=42.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028818 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (203)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (203)
-+.|+.-+..||..|.+|+.+|..|++.+.---.. .....++..-|.=||+-|...+.+|.
T Consensus 13 ~~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd----~ErLNDEiislNIENNlL~~rl~~l~ 73 (75)
T 3a7o_A 13 DDALLNTLAILQKELKSKEQEIRRLKEVIALKNKN----TERLNDELISGTIENNVLQQKLSDLK 73 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----HHHhhHHHHHhHHHHHHHHHHHHHHh
Confidence 34456678999999999999999999776522222 23556777788888888877665554
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.29 E-value=0.28 Score=44.26 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 028818 89 ADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (203)
Q Consensus 89 ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (203)
++..+|.+.-+.-..++..|.++++++..=.|+|++-+++.
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~ 584 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRN 584 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33334444444444466677777777766666666666543
No 14
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=94.28 E-value=0.73 Score=36.91 Aligned_cols=75 Identities=16% Similarity=0.225 Sum_probs=68.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 028818 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (203)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (203)
+++.--|+..||.++...+....+.++...+...|+.-++..|. .|+..+...+..|..|...+.+++|.|...-
T Consensus 47 ~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~e 124 (147)
T 2b9c_A 47 AQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKV 124 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
Confidence 34777899999999999999999999999999999999999999 9999999999999999999999999987544
No 15
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=94.19 E-value=1.4 Score=35.86 Aligned_cols=77 Identities=22% Similarity=0.286 Sum_probs=57.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (203)
-+..|...+|.+|..|..+|.+-+.....-+..|..|+..+- ++|.........+..+-+..-+.+..+.-++-.|+
T Consensus 67 kasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~ 146 (155)
T 2efr_A 67 KYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLE 146 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 677899999999999999999988888888888888888777 66777777777777777765555544444444443
No 16
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=94.16 E-value=1.2 Score=34.41 Aligned_cols=76 Identities=18% Similarity=0.353 Sum_probs=47.2
Q ss_pred HHHhhhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028818 41 ISTRVSDLESEHSALRSQLA-------EKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQR 110 (203)
Q Consensus 41 ~atRVs~LE~E~~~LR~~La-------EKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvKkL~r 110 (203)
+-.+..+|+.|...|..+|. +++.....|..+-..|+..|. .||..-.+.+..|..++..|...+..|..
T Consensus 39 le~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~ 118 (129)
T 2fxo_A 39 LEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKR 118 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666655554 444444445555555555555 66667777777777777777777777777
Q ss_pred hHHHHH
Q 028818 111 DVSKLE 116 (203)
Q Consensus 111 DvaKLE 116 (203)
++.-+|
T Consensus 119 ~led~e 124 (129)
T 2fxo_A 119 DIDDLE 124 (129)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776665
No 17
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=93.58 E-value=0.44 Score=35.14 Aligned_cols=70 Identities=24% Similarity=0.377 Sum_probs=45.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 028818 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (203)
Q Consensus 46 s~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (203)
+.||++...+-++|.+-.....+|++||..|+..|. .+..+...+..|-..|..+. ---+..|--|+..|
T Consensus 2 ~~l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le----~s~~~q~~~~~Elk~l~e~L---d~KI~eL~elRqgL 71 (79)
T 3cvf_A 2 SHMAAEREETQQKVQDLETRNAELEHQLRAMERSLE----EARAERERARAEVGRAAQLL---DVSLFELSELREGL 71 (79)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHH
Confidence 358888888999999999999999999999999887 77777777777766665543 23333444444443
No 18
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=93.38 E-value=0.06 Score=47.19 Aligned_cols=69 Identities=17% Similarity=0.303 Sum_probs=22.6
Q ss_pred HHhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028818 42 STRVSDLESEHSALRSQLAEK---DSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (203)
Q Consensus 42 atRVs~LE~E~~~LR~~LaEK---d~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (203)
+..|..|+.|+..||.++.+- .+.... ++|+..|+.++. .....|.+|..+...+...+.+|..+|.+|
T Consensus 23 ~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~-~~~l~eL~~ql~----~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 23 AAELEQLRREAAVLREQLENAVGSHAPTRS-ARDIHQLEARID----SLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp -----------------------------C-CHHHHHHHHHHH----HHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhhhcccCcccchh-hhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556667888888888888644 333333 444554444443 444455555555555555555555555554
No 19
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=93.33 E-value=1.9 Score=33.47 Aligned_cols=60 Identities=12% Similarity=0.230 Sum_probs=37.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKD----SRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENE 99 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd----~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~ 99 (203)
.+..++..|+.|+..+|.++..-. ..|..||+.+..|-..-. .+++...+.|..|.....
T Consensus 7 dL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R 73 (111)
T 2v66_B 7 DLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKR 73 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 577888999999999998887433 345556666555544433 455555555555554443
No 20
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=93.21 E-value=0.67 Score=36.25 Aligned_cols=53 Identities=26% Similarity=0.293 Sum_probs=34.2
Q ss_pred hHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 028818 48 LESEHSALRSQ----LAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEA 100 (203)
Q Consensus 48 LE~E~~~LR~~----LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~ 100 (203)
|-.|+.+||.. ..|-.+.|.+|+.||+.|+.+|. .-...|..++..|..|...
T Consensus 20 Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~ 79 (120)
T 3i00_A 20 LYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDE 79 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444 35889999999999999999998 2223344455555544443
No 21
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=93.01 E-value=1.8 Score=35.93 Aligned_cols=66 Identities=18% Similarity=0.353 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHHH-HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028818 47 DLESEHSALRSQLA-EK------DSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (203)
Q Consensus 47 ~LE~E~~~LR~~La-EK------d~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (203)
.||.|+..|..+|. || ...|.+|+.|+..|+.++. ...+.-.++..||..|..-|-.|.+.-+-+|
T Consensus 66 ~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~----~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 66 QTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVK----HLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45556666666665 55 3456788888888888886 3333334444444444444444444444444
No 22
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=93.00 E-value=0.74 Score=46.48 Aligned_cols=75 Identities=11% Similarity=0.235 Sum_probs=44.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 028818 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (203)
Q Consensus 44 RVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~----------~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (203)
++..|+.++..++.++..-...+.+++.++..|+.++. ..+..+.++..+|..++..|...++.|..++.
T Consensus 858 El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~ele 937 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIE 937 (1184)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666667776666666666666666665555444 33444555566666666666666666666655
Q ss_pred HHHHH
Q 028818 114 KLEVF 118 (203)
Q Consensus 114 KLE~F 118 (203)
.++.-
T Consensus 938 e~ee~ 942 (1184)
T 1i84_S 938 EEEER 942 (1184)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 54443
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.84 E-value=1 Score=40.58 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHH
Q 028818 92 ERLSKENEALTNTVRKLQRDVS 113 (203)
Q Consensus 92 ~kL~~E~~~La~TvKkL~rDva 113 (203)
.+|.+|+..|...++.-.+.+.
T Consensus 540 ~~~~~~~~~le~~~~~~~~~~~ 561 (597)
T 3oja_B 540 EDLEQENIALEKQLDNKRAKQA 561 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhhHHHHHHHhhhhhHHH
Confidence 3333455555544444444433
No 24
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=92.83 E-value=0.44 Score=34.76 Aligned_cols=45 Identities=20% Similarity=0.188 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 52 HSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEA 100 (203)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~ 100 (203)
+..|+..|.+|++.|...++++..||..|+ +..+++.+|+.|-+.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~----ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELD----QKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 455666666666666666666665555554 444444455554443
No 25
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=92.62 E-value=1.4 Score=34.91 Aligned_cols=53 Identities=28% Similarity=0.317 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028818 65 RIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (203)
Q Consensus 65 ~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (203)
.+..|+.++..++.++. ..|..+..+...+.+|+..|...+..|.+.+.+||+
T Consensus 76 ~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 76 MADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444 455588888999999999999999999999999985
No 26
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=92.47 E-value=2.5 Score=31.36 Aligned_cols=71 Identities=13% Similarity=0.241 Sum_probs=46.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (203)
.|--||-.||.+-..|..++..-.. ...+.+...+..-+.........+..||..|...+..|..++..|+
T Consensus 20 syIdKVR~LEqqN~~Le~~i~~l~~------~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k 90 (93)
T 3s4r_A 20 NLIDKVRFLEQQNKILLAELEQLKG------QGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh------ccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778999999998888766543211 1223333333344556667777777788888777777777766543
No 27
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=92.41 E-value=3.1 Score=34.88 Aligned_cols=76 Identities=8% Similarity=0.118 Sum_probs=46.1
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 25 DPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALT 102 (203)
Q Consensus 25 DP~EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La 102 (203)
++-|-=+|-+.|. .+..|.+.||.++..+-.++.++...+.+++.++..++..|...-....+....+.++...|.
T Consensus 88 ~~kE~~aL~kEie--~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~ 163 (256)
T 3na7_A 88 SERELRSLNIEED--IAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIF 163 (256)
T ss_dssp SSSHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555 445788888888888888888887778777777777777776322333333333333333333
No 28
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=92.27 E-value=1.1 Score=32.80 Aligned_cols=58 Identities=28% Similarity=0.364 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 028818 52 HSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (203)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (203)
-..|-.+|.+|+++|..|..=+.+ |.+||-.-.+-+.||+.+...+..-+..|++|++
T Consensus 5 NKeL~~kl~~Kq~EI~rLnvlvgs----lR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~~ 62 (74)
T 2q6q_A 5 NKELNFKLREKQNEIFELKKIAET----LRSKLEKYVDITKKLEDQNLNLQIKISDLEKKLS 62 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcc
Confidence 456888999999999887655554 4456668889999999999999999988888764
No 29
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=92.17 E-value=0.5 Score=39.98 Aligned_cols=37 Identities=32% Similarity=0.487 Sum_probs=34.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
|++|-+|...|+++|..|+.+|..|++++.+++....
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 6789999999999999999999999999999888774
No 30
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=92.11 E-value=3.2 Score=31.80 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=11.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLA 60 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~La 60 (203)
-+...|+.|+.|+..|+.+-+
T Consensus 40 elrr~iq~L~~el~~l~~~~~ 60 (129)
T 3tnu_B 40 EMNRMIQRLRAEIDNVKKQCA 60 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHH
Confidence 344556666666666655443
No 31
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=92.01 E-value=2.4 Score=30.29 Aligned_cols=40 Identities=15% Similarity=0.270 Sum_probs=18.4
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 42 atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
..|+..+|.++.............|..|+.|+..+|..|-
T Consensus 19 ~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld 58 (81)
T 1ic2_A 19 LDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELD 58 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444443
No 32
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=91.98 E-value=0.84 Score=34.81 Aligned_cols=66 Identities=20% Similarity=0.351 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028818 48 LESEHSALRSQLAEKD---SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (203)
Q Consensus 48 LE~E~~~LR~~LaEKd---~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (203)
...+|..|++.++.+. ..|.-|+.++.-....+. .=+.+-+++..|+..|...+..|.+++.+|..
T Consensus 21 kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~----aERadREkl~~eKe~L~~ql~~lq~q~~~L~~ 89 (94)
T 3jsv_C 21 KQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQ----AERHAREKLVEKKEYLQEQLEQLQREFNKLKV 89 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHTTSHHHHHHHHHHHTTC----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777887777666 566777777776666665 55667789999999999999999999998864
No 33
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=91.97 E-value=1 Score=50.68 Aligned_cols=84 Identities=19% Similarity=0.294 Sum_probs=58.7
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-----------------DKLGQAQADKERLSKENEALTNTV 105 (203)
Q Consensus 43 tRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~-----------------~rL~~a~ee~~kL~~E~~~La~Tv 105 (203)
.++..+|.+....+++|.++.+.+.++++++..|+.++. .||..|..=...|..|+..=..++
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~ 2093 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQS 2093 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHH
Confidence 466677777777777777777777777777777666654 455556666677888888888888
Q ss_pred HHHhhhHHHH------------------HHHHHHHHhhc
Q 028818 106 RKLQRDVSKL------------------EVFRKTLVQSL 126 (203)
Q Consensus 106 KkL~rDvaKL------------------E~FKk~LmqSL 126 (203)
+.|..+...| +.||+.|++..
T Consensus 2094 ~~l~~~~~~L~GD~LLaaafisY~G~f~~~~R~~l~~~W 2132 (3245)
T 3vkg_A 2094 ENFNTQMSTVVGDVVLASAFLAYIGFFDQNFRTDLMRKW 2132 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 8777766664 45777777643
No 34
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=91.95 E-value=3.2 Score=34.79 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 028818 99 EALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (203)
Q Consensus 99 ~~La~TvKkL~rDvaKLE~FKk~LmqSL 126 (203)
..+...+..+..+++.|..=+..|...|
T Consensus 146 ~~~~~~~~e~~~e~~~l~~~r~~l~~~i 173 (256)
T 3na7_A 146 SLVENEVKNIKETQQIIFKKKEDLVEKT 173 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3334444444445555554444555444
No 35
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=91.81 E-value=2.6 Score=30.11 Aligned_cols=42 Identities=10% Similarity=0.158 Sum_probs=31.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
||..|+..|+.|......++.+-...+.+.+.+...++..+.
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~ 44 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELV 44 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 678888888888888777777777777777777766666665
No 36
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=91.64 E-value=5.9 Score=34.94 Aligned_cols=63 Identities=16% Similarity=0.282 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028818 55 LRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (203)
Q Consensus 55 LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (203)
|+++|.|=..-..+++.+.++....+-........+..+-++....|.+.|++||..+..+++
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (471)
T 3mq9_A 402 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASA 464 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444333222111111122233334556677778888877665554
No 37
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=91.36 E-value=3.2 Score=30.33 Aligned_cols=32 Identities=13% Similarity=0.289 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028818 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (203)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (203)
....+...|..+...|...+..|.+.+..|+.
T Consensus 68 ~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~ 99 (112)
T 1l8d_A 68 KYHLDLNNSKNTLAKLIDRKSELERELRRIDM 99 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444433
No 38
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=91.15 E-value=2.8 Score=31.99 Aligned_cols=87 Identities=13% Similarity=0.246 Sum_probs=63.0
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 26 PFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAEL---QSQIESIYSSLSDKLGQAQADKERLSKENEALT 102 (203)
Q Consensus 26 P~EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~L---q~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La 102 (203)
|.|||.++..-+..|.+..++....|...-|.+|..-..-+.+= +.|.-.=+.++-+||..+.-...|=++..+.|.
T Consensus 5 P~eql~~te~Ai~~A~~aga~~~apEl~~A~dKl~~A~~Am~~~~y~~Ar~lAEqAe~DArLAeAka~~~Ka~~~~~el~ 84 (98)
T 4fm3_A 5 PLEQMRLTEQALEQAKAVGATDDVAELKLAQDKYAAAQIAMTAESYKKARLLAEQAELDARLAESKVLTQKSKDQLGELD 84 (98)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999888888888887655544321 111111122333777788888888888888888
Q ss_pred HHHHHHhhhH
Q 028818 103 NTVRKLQRDV 112 (203)
Q Consensus 103 ~TvKkL~rDv 112 (203)
..|..|..++
T Consensus 85 ~~I~~LrqEl 94 (98)
T 4fm3_A 85 KSLKRLRKQL 94 (98)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777776654
No 39
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=91.11 E-value=3 Score=32.05 Aligned_cols=21 Identities=24% Similarity=0.203 Sum_probs=12.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLA 60 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~La 60 (203)
-+...|+.|+.|+..|+.+-+
T Consensus 42 elrr~iq~L~~el~~l~~~~~ 62 (131)
T 3tnu_A 42 ELRRTMQNLEIELQSQLSMKA 62 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHH
Confidence 345566677777766665443
No 40
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=89.97 E-value=0.7 Score=33.13 Aligned_cols=45 Identities=24% Similarity=0.412 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028818 60 AEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (203)
Q Consensus 60 aEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (203)
.-|+.+|.+|+.++..|+.... .|..||..|-..|..|...+..|
T Consensus 25 eRK~~~i~~LE~~v~~le~~~~-----------~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 25 KRKEDHLKALETQVVTLKELHS-----------STTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHc
Confidence 3588999999999887776554 46677777777777776665443
No 41
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=89.79 E-value=5.7 Score=33.27 Aligned_cols=67 Identities=12% Similarity=0.221 Sum_probs=44.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSR----IAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVR 106 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~----i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvK 106 (203)
.+.+++..|..|+..+|.++..=... |..|++.++.|..... .+++...+.|..|.........++.
T Consensus 60 ~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~Sle 133 (189)
T 2v71_A 60 DLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLE 133 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHH
Confidence 56677777777777777777643333 6677777766666555 6666777777777666666655554
No 42
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=89.69 E-value=0.43 Score=29.87 Aligned_cols=30 Identities=23% Similarity=0.422 Sum_probs=21.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
||+||.|++.|. ..+.+||+|+..||..+|
T Consensus 1 isrlee~~r~l~-------~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 1 VSRLEEDVRNLN-------AIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp CCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Confidence 467888877775 456678888888877765
No 43
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=89.46 E-value=1.3 Score=32.30 Aligned_cols=37 Identities=19% Similarity=0.287 Sum_probs=29.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
|-.|+..+..-..+|..||..|.+|+.++...|..++
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~ 57 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQ 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777888888888888888888887776
No 44
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=89.45 E-value=1.2 Score=34.83 Aligned_cols=15 Identities=20% Similarity=0.140 Sum_probs=6.7
Q ss_pred hhhHHHHHHHHHHHH
Q 028818 46 SDLESEHSALRSQLA 60 (203)
Q Consensus 46 s~LE~E~~~LR~~La 60 (203)
.+|..+.+.|+.+|.
T Consensus 9 ~~lq~~~~ql~~qL~ 23 (112)
T 1x79_B 9 KKLQLMLRQANDQLE 23 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 45
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=89.21 E-value=6.5 Score=30.49 Aligned_cols=77 Identities=19% Similarity=0.296 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 028818 52 HSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (203)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~ 128 (203)
.+.|+.+..-=...+.+++.|+.....+..........+..+|..+++.|..-++.|...-.-||.=.|...-||.|
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD 81 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLED 81 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHH
Confidence 44455555544455555666655555444344455667777788888888888888888888888888888877765
No 46
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=88.45 E-value=2.5 Score=33.93 Aligned_cols=46 Identities=17% Similarity=0.329 Sum_probs=29.4
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhhHH---HHHHHHHHHHHHHHHHHHHHH
Q 028818 25 DPFEQLDVARKITSIAISTRVSDLES---EHSALRSQLAEKDSRIAELQS 71 (203)
Q Consensus 25 DP~EQLdlarkIts~A~atRVs~LE~---E~~~LR~~LaEKd~~i~~Lq~ 71 (203)
|=.++|-++|++.+. ...|+++||. +...|...+..++..+..|+.
T Consensus 5 ~LEd~L~~~r~~l~~-~~~~~~~le~l~~~l~~l~~~l~~~~~e~~~L~~ 53 (135)
T 2e7s_A 5 SLEEQLNKSLKTIAS-QKAAIENYNQLKEDYNTLKRELSDRDDEVKRLRE 53 (135)
T ss_dssp -CCSTTTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTHHH
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 445788888875544 4677777776 455555556566666666655
No 47
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=88.31 E-value=7.2 Score=29.91 Aligned_cols=74 Identities=20% Similarity=0.183 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 028818 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (203)
Q Consensus 49 E~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~-------~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~ 121 (203)
..|+..||..+..-...|..++.+-..||.++. ..+..+......|..+...+-..+-...++-..|=+.|-.
T Consensus 37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~ 116 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTR 116 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555554 2333444444445555555555555555555555555544
Q ss_pred H
Q 028818 122 L 122 (203)
Q Consensus 122 L 122 (203)
|
T Consensus 117 L 117 (131)
T 3tnu_A 117 L 117 (131)
T ss_dssp H
T ss_pred H
Confidence 3
No 48
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=88.08 E-value=3.5 Score=39.66 Aligned_cols=64 Identities=23% Similarity=0.385 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 028818 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (203)
Q Consensus 50 ~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (203)
+|-.+||+.+.++...|..++.-++++...+. .....+.+..+.+.+|+..+.+.+-.++..++
T Consensus 349 ae~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~KiA 415 (602)
T 1cii_A 349 AEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQKIA 415 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 56788999999999999999999999988888 67788899999999999999888877776654
No 49
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=87.91 E-value=8.2 Score=31.55 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 028818 86 QAQADKERLSKENEALTNTVRKLQRDVSK 114 (203)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (203)
...++..-|+=+.+.+...+++|..+-.+
T Consensus 100 ~l~DEl~aLqlq~n~lE~kl~kLq~EN~~ 128 (152)
T 3a7p_A 100 RLNAALISGTIENNVLQQKLSDLKKEHSQ 128 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555566666666666554433
No 50
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=87.89 E-value=0.51 Score=38.54 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 028818 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (203)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (203)
....+..||..++..+...-+.|.||+.-...-||+|
T Consensus 98 ~LeAE~aKLeEekQIseASRqgLrRDLeASReAKKql 134 (146)
T 2xnx_M 98 QLTIEKAKLEEEKQISDASRQSLRRDLDASREAKKQV 134 (146)
T ss_dssp HHHHHHHHHGGGTTTC---------------------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555543
No 51
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=87.69 E-value=7.8 Score=29.59 Aligned_cols=74 Identities=15% Similarity=0.217 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 028818 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (203)
Q Consensus 49 E~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~-------~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~ 121 (203)
..|+..||..+..-...|..|+.+...||.++. ..+..+......|..+...+-..+-...++-..|=+.|-.
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~ 114 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLA 114 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666665 2334444444455555555555555555555555555544
Q ss_pred H
Q 028818 122 L 122 (203)
Q Consensus 122 L 122 (203)
|
T Consensus 115 L 115 (129)
T 3tnu_B 115 L 115 (129)
T ss_dssp H
T ss_pred H
Confidence 3
No 52
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=87.44 E-value=7.1 Score=28.87 Aligned_cols=46 Identities=13% Similarity=0.272 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028818 64 SRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQ 109 (203)
Q Consensus 64 ~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (203)
..|.+|+++-..|..+.+ +.-....++|.+|..|..+-...+..|-
T Consensus 27 mEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LL 75 (81)
T 2jee_A 27 MEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443 1112355566777777777666666654
No 53
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=86.79 E-value=4.9 Score=27.52 Aligned_cols=33 Identities=30% Similarity=0.491 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 028818 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (203)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (203)
...++...|..+|..|...|..|...+..|..+
T Consensus 27 ~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 27 TLQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667777778888888888887777654
No 54
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=86.52 E-value=0.93 Score=34.46 Aligned_cols=48 Identities=13% Similarity=0.227 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028818 62 KDSRIAELQSQIESIYSSLS--DKLGQAQADKERLSKENEALTNTVRKLQ 109 (203)
Q Consensus 62 Kd~~i~~Lq~r~s~Le~~L~--~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (203)
+...|.|+-++++.++..-- -+++...++++||.+|+..-...++.|.
T Consensus 30 R~qvikEIs~Kv~~Iqn~~L~E~~IRdLNDEINkL~rEK~~WE~rI~eLG 79 (92)
T 1x4t_A 30 RRQIIGEISKKVAQIQNAGLGEFRIRDLNDEINKLLREKGHWEVRIKELG 79 (92)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34556777777776654433 7888999999999999999999998875
No 55
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=86.42 E-value=1.1 Score=40.67 Aligned_cols=37 Identities=14% Similarity=0.346 Sum_probs=20.5
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSS 79 (203)
Q Consensus 43 tRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~ 79 (203)
+++..|+.|+..|+++..+.++.|++++.++..++..
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 39 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEI 39 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666665554444433
No 56
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=86.41 E-value=9.2 Score=29.13 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhhhHHHHHHH
Q 028818 99 EALTNTVRKLQRDVSKLEVF 118 (203)
Q Consensus 99 ~~La~TvKkL~rDvaKLE~F 118 (203)
-.|.+.|..|.-++..|+..
T Consensus 86 ~dLE~~iesL~eEl~FLKk~ 105 (119)
T 3ol1_A 86 LDLERKVESLQEEIAFLKKL 105 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555565555555443
No 57
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=86.34 E-value=6.3 Score=29.31 Aligned_cols=56 Identities=21% Similarity=0.260 Sum_probs=35.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL 108 (203)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL 108 (203)
-|.||+||.. |+..-.+| .++...-..++.+|+.+...|..|..|...|...++-|
T Consensus 16 QSALeaEIqA-------KQ~i~EEL-s~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 16 QEALEEEVLT-------RQSLSREM-EAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHH-------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666543 44444455 45554444555888899999998888866666555554
No 58
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=86.26 E-value=1.5 Score=32.71 Aligned_cols=34 Identities=38% Similarity=0.569 Sum_probs=22.3
Q ss_pred HHHHhhhhhHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESE--------------HSALRSQLAEKDSRIAELQSQI 73 (203)
Q Consensus 40 A~atRVs~LE~E--------------~~~LR~~LaEKd~~i~~Lq~r~ 73 (203)
-+.-||+.||+| +..|+++|..|+..|.-|+.++
T Consensus 30 ~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 30 HLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 456677777754 6666777777777666666554
No 59
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=85.86 E-value=7.9 Score=27.81 Aligned_cols=67 Identities=18% Similarity=0.267 Sum_probs=46.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (203)
++.+....||..+..+..... ..+.+++.++..+|.+|+ .+..+......|-..|-+.=-+|--+++
T Consensus 5 ~l~~~~~sLE~~l~e~e~~~~---~~~~~~q~~i~~lE~eL~----~~r~e~~~q~~EYq~LlnvK~~Ld~EIa 71 (84)
T 1gk4_A 5 ALKGTNESLERQMREMEENFA---VEAANYQDTIGRLQDEIQ----NMKEEMARHLREYQDLLNVKMALDIEIA 71 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 345566677777776666653 346788888999999888 6777777777777777776556655543
No 60
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=85.83 E-value=4.1 Score=31.53 Aligned_cols=49 Identities=29% Similarity=0.474 Sum_probs=32.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENE 99 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~ 99 (203)
-+-.|++.||.|..+||..-.+=...|.+|+..+. ....+|..|..||.
T Consensus 41 ~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~eve-----------rL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 41 ELEKSLSRMEDENNRLRLESKRLDARVRELELELD-----------RLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 56778999999999999885555555555554433 44445555555554
No 61
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=85.52 E-value=4.6 Score=30.88 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 028818 86 QAQADKERLSKENEALTNTVRKLQ 109 (203)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~ 109 (203)
.+.++..+|+.|...|-..|++|.
T Consensus 72 ~~~~~~e~Lq~E~erLr~~v~~lE 95 (100)
T 1go4_E 72 RLREDHSQLQAECERLRGLLRAME 95 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455667777777776666665543
No 62
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=85.32 E-value=4.9 Score=31.87 Aligned_cols=34 Identities=15% Similarity=0.296 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 48 LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
||.+...-.+-|.+++.....-..-|..|-..|-
T Consensus 30 Lq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~ 63 (121)
T 3mq7_A 30 LQQELTEAQKGFQDVEAQAATANHTVMALMASLD 63 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444443
No 63
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=85.06 E-value=11 Score=28.73 Aligned_cols=70 Identities=16% Similarity=0.244 Sum_probs=43.2
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 028818 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----DKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (203)
Q Consensus 43 tRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~----~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (203)
.+++..+.|+.+|+..|.+-...-...+.....++.+|- +-..+|..+...-..++..+...+.+|...+
T Consensus 19 ~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL 92 (97)
T 2eqb_B 19 RELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQL 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667788888888888666666666666666666665 3344555555555555555555555555444
No 64
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=84.49 E-value=9.7 Score=27.68 Aligned_cols=38 Identities=21% Similarity=0.123 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 028818 90 DKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (203)
Q Consensus 90 e~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq 127 (203)
...+...+...|...+..|...+..|+.-.+.|-+.+.
T Consensus 65 ~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 65 LLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666665555544443
No 65
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=84.46 E-value=18 Score=33.88 Aligned_cols=73 Identities=10% Similarity=0.166 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 028818 55 LRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQAD-KERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (203)
Q Consensus 55 LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee-~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq 127 (203)
|+..+.+++..+.++...+......|........+. +.+....-..|...+..|...|.+||..-.+++....
T Consensus 126 Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~L~~~~~~l~~ki~~l~~~~~~~~~~~~ 199 (464)
T 1m1j_B 126 IDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRVLRAVIDSLHKKIQKLENAIATQTDYCR 199 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 455556666666666655555555554111111111 1123344556677788888888888888887776554
No 66
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=84.17 E-value=2.8 Score=28.90 Aligned_cols=36 Identities=22% Similarity=0.346 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 028818 83 KLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (203)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (203)
+.....++...|..+|+.|...|..|.+++.-|..+
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667788888888888898888888887543
No 67
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=83.37 E-value=18 Score=29.89 Aligned_cols=79 Identities=19% Similarity=0.215 Sum_probs=37.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 028818 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (203)
Q Consensus 44 RVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk 120 (203)
-++.+|.-++.|+.++.-=...-..|++.+..|..+|. .-..+..+.+..|+....+|..-++.+.--.+|++.=+|
T Consensus 42 ~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r 121 (168)
T 3o0z_A 42 SISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERK 121 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555444444555555555555555 112233333344444444444444444444444444444
Q ss_pred HH
Q 028818 121 TL 122 (203)
Q Consensus 121 ~L 122 (203)
+|
T Consensus 122 ~L 123 (168)
T 3o0z_A 122 EA 123 (168)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 68
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=83.26 E-value=1.6 Score=35.42 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (203)
Q Consensus 47 ~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~ 78 (203)
.||..++.|...|..|+..|.+|++|+..+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 35 (198)
T 4ghu_A 4 LLESQLSRHDQMLSVHDIRLADMDLRFQVLET 35 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 67888888888888888888888877776664
No 69
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=83.03 E-value=6.1 Score=29.46 Aligned_cols=63 Identities=11% Similarity=0.112 Sum_probs=41.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 028818 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (203)
Q Consensus 44 RVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (203)
+...||..++.+....+ ..+..++..+..||.+|+ .+.++......|-..|-+.=-+|--+++
T Consensus 20 ~~~~LE~~l~e~E~~~~---~e~~~~q~~i~~lE~eL~----~~r~e~~~ql~EYq~LlnvKl~Le~EIa 82 (95)
T 3mov_A 20 ESRACLERIQELEDLLA---KEKDNSRRMLTDKEREMA----EIRDQMQQQLNDYEQLLDVKLALDMEIS 82 (95)
T ss_dssp CCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555544433 356778888888898887 6667777777777777776556665544
No 70
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=82.80 E-value=11 Score=27.18 Aligned_cols=65 Identities=11% Similarity=0.156 Sum_probs=37.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 028818 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (203)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (203)
+.+..+.||.-+..+.... ...+..++..+..+|.+|+ .+..+......|-..|-+.=-+|--++
T Consensus 8 L~~q~~~Le~~l~e~E~~~---~~~l~~~q~~i~~lE~el~----~~r~e~~~ql~EYq~LlnvK~~Le~EI 72 (86)
T 1x8y_A 8 LQCQLAAKEAKLRDLEDSL---ARERDTSRRLLAEKEREMA----EMRARMQQQLDEYQELLDIKLALDMEI 72 (86)
T ss_dssp ----CTTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3444455665555555543 3356667777777777776 666666666667666666555555544
No 71
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=82.71 E-value=4.7 Score=27.40 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028818 84 LGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (203)
Q Consensus 84 L~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (203)
+....++...|..+|+.|...|..|...++.|..
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566777888888888888888777643
No 72
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=82.37 E-value=4 Score=36.50 Aligned_cols=42 Identities=17% Similarity=0.103 Sum_probs=30.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
++..++++|..|+.+|...+...+..|..|+.++..++..++
T Consensus 2 ~~~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~ 43 (323)
T 1lwu_C 2 SGQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVT 43 (323)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Confidence 355678888888888888888888888888877776655443
No 73
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=82.31 E-value=9.2 Score=25.77 Aligned_cols=32 Identities=28% Similarity=0.357 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028818 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (203)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (203)
...++...|..+|..|...|..|..++..|..
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556667777777777777777776654
No 74
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=82.27 E-value=12 Score=27.28 Aligned_cols=9 Identities=44% Similarity=0.671 Sum_probs=4.5
Q ss_pred HHhhhhhHH
Q 028818 42 STRVSDLES 50 (203)
Q Consensus 42 atRVs~LE~ 50 (203)
..||..||.
T Consensus 5 e~rv~~LEr 13 (83)
T 2xdj_A 5 EDRVTQLER 13 (83)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 345555554
No 75
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=82.17 E-value=13 Score=35.92 Aligned_cols=59 Identities=24% Similarity=0.291 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH---------------------HHHHHHHHHHhhc
Q 028818 68 ELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS---------------------KLEVFRKTLVQSL 126 (203)
Q Consensus 68 ~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva---------------------KLE~FKk~LmqSL 126 (203)
+|++++..|+..++ .-...+..|+.-.+.+...++||.-||+ --|+.-|+|-|-.
T Consensus 114 ELRRrIqyLKekVd----nQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~ 189 (562)
T 3ghg_A 114 DLRSRIEVLKRKVI----EKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVI 189 (562)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHHh
Confidence 45555555554444 1123334444444444444555554443 2567889998855
Q ss_pred cccc
Q 028818 127 KDDE 130 (203)
Q Consensus 127 q~d~ 130 (203)
--|-
T Consensus 190 a~dL 193 (562)
T 3ghg_A 190 AKDL 193 (562)
T ss_dssp TTCC
T ss_pred hccc
Confidence 4443
No 76
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=81.93 E-value=8 Score=28.01 Aligned_cols=66 Identities=15% Similarity=0.246 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 028818 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (203)
Q Consensus 50 ~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (203)
.|+..||.+.+.....+.+++.++. ..+.........|..|...+-..+....++-..|=+.|-.|
T Consensus 3 ~eie~L~~q~~~Le~~l~e~E~~~~-------~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~L 68 (86)
T 1x8y_A 3 CQLSQLQCQLAAKEAKLRDLEDSLA-------RERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLAL 68 (86)
T ss_dssp ---------CTTHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4666677766665555556555443 22234444455555555555555556666666665555443
No 77
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=81.92 E-value=5.4 Score=28.80 Aligned_cols=32 Identities=9% Similarity=0.146 Sum_probs=16.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhcccccC
Q 028818 100 ALTNTVRKLQRDVSKLEVFRKTLVQSLKDDED 131 (203)
Q Consensus 100 ~La~TvKkL~rDvaKLE~FKk~LmqSLq~d~~ 131 (203)
.|..+|-+.++++++|..-=+.|.+.|++-.+
T Consensus 32 eLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 32 ELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45556666666666666666666666655443
No 78
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=81.81 E-value=7.8 Score=28.39 Aligned_cols=43 Identities=19% Similarity=0.356 Sum_probs=29.1
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
.-+..++..|..|+..||-++.+-...|..|++|-..+-..|-
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777777777766555544443
No 79
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=81.71 E-value=7.6 Score=28.77 Aligned_cols=33 Identities=33% Similarity=0.468 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 028818 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (203)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (203)
...++...|.+||..|-..|..|..+|..|..+
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~l 72 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667889999999999999999998877543
No 80
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=81.14 E-value=4.5 Score=36.57 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccC
Q 028818 90 DKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDED 131 (203)
Q Consensus 90 e~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d~~ 131 (203)
+..+|.++...+...++.|+..+.+-|..+|.|-..+++-..
T Consensus 18 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 18 KIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 333444444444444445555555666666666666665443
No 81
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=80.40 E-value=14 Score=26.67 Aligned_cols=46 Identities=17% Similarity=0.311 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 55 LRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNT 104 (203)
Q Consensus 55 LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~T 104 (203)
+-++|.+-.....+|++||..|+..|. .+..+...+..|-..|..+
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le----~s~~~q~~~~~Elk~~~e~ 50 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLE----KSQSEQDAFRSNLKTLLEI 50 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 345566666667778888888887776 6666666666665555443
No 82
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=79.90 E-value=7.7 Score=26.17 Aligned_cols=39 Identities=21% Similarity=0.245 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 61 EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTN 103 (203)
Q Consensus 61 EKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~ 103 (203)
-|...+.+|+.++..|+..-. ....+...|..|+..|-+
T Consensus 19 rKk~~~~~Le~~~~~L~~~n~----~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 19 KRKVWVQSLEKKAEDLSSLNG----QLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 455677777777776666554 444445555555555443
No 83
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=79.46 E-value=3.3 Score=34.50 Aligned_cols=39 Identities=13% Similarity=0.308 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 028818 88 QADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (203)
Q Consensus 88 ~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSL 126 (203)
.++|.+..+--+.|-..+..+++.+.+|+.+|+.||+.+
T Consensus 378 l~eQ~~I~~~l~~ld~~i~~~~~~~~~l~~~k~~Ll~~l 416 (425)
T 1yf2_A 378 LEEQKQIAKILSSVDKSIELKKQKKEKLQRMKKKIMELL 416 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666777788888999999999999976
No 84
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=79.23 E-value=17 Score=26.93 Aligned_cols=42 Identities=7% Similarity=0.151 Sum_probs=28.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
||+.+|..|-.|....-.....-...+.+++.+...+|..+.
T Consensus 6 aIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~ 47 (101)
T 3u1c_A 6 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIV 47 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 778888777777666666666666666666666666665554
No 85
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=78.57 E-value=18 Score=26.79 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028818 88 QADKERLSKENEALTNTVRKLQRDVSKLE 116 (203)
Q Consensus 88 ~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (203)
.-+...+++|+++|.++..--...+.||.
T Consensus 66 ~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~ 94 (96)
T 3q8t_A 66 KRQQLELDDELKSVENQMRYAQMQLDKLK 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33456677888888887776666666664
No 86
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=78.27 E-value=17 Score=29.39 Aligned_cols=62 Identities=18% Similarity=0.257 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 028818 62 KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEA-------------LTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (203)
Q Consensus 62 Kd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~-------------La~TvKkL~rDvaKLE~FKk~LmqSLq 127 (203)
|+....+|+.++..+|.+|+ +..-+..++.+|... +.+--...+..-++++..|+.|.+-|+
T Consensus 27 Ke~l~~~l~~~i~q~d~elq----QLefq~kr~~~e~~~q~~~~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~ 101 (150)
T 4dci_A 27 KEEAEREISNGIANADQQLA----QLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQA 101 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777778877777777 333333333333322 112224455666677777777766544
No 87
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=78.14 E-value=18 Score=26.75 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028818 86 QAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (203)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (203)
...++|..|..|+..+.+....|.++..+|.
T Consensus 31 ELKekN~~L~~e~~e~~~~~~~L~~en~qLk 61 (81)
T 2jee_A 31 ELKEKNNSLSQEVQNAQHQREELERENNHLK 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5555666666666665555555666666554
No 88
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=77.74 E-value=36 Score=29.88 Aligned_cols=17 Identities=12% Similarity=0.110 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028818 65 RIAELQSQIESIYSSLS 81 (203)
Q Consensus 65 ~i~~Lq~r~s~Le~~L~ 81 (203)
.-..||+++..++..+.
T Consensus 398 ~~~~~~~~~~~~~~~~~ 414 (471)
T 3mq9_A 398 VTHLLQQELTEAQKGFQ 414 (471)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHH
Confidence 33445555555555444
No 89
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=77.70 E-value=23 Score=27.67 Aligned_cols=30 Identities=10% Similarity=0.182 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 028818 91 KERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (203)
Q Consensus 91 ~~kL~~E~~~La~TvKkL~rDvaKLE~FKk 120 (203)
..++.+.+..|-..+|+...=|+-+|.+|+
T Consensus 77 ~k~Y~~~~keLd~~ik~qekiIdnFE~ik~ 106 (119)
T 3etw_A 77 ASKYEDALKKLEAEMEQQKAVISDFEKIQA 106 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777777766666553
No 90
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=76.78 E-value=12 Score=25.38 Aligned_cols=33 Identities=24% Similarity=0.347 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 65 RIAELQSQIESIYSSLSDKLGQAQADKERLSKENEAL 101 (203)
Q Consensus 65 ~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~L 101 (203)
.+..|-+|-..|...|. .+.++..+|.+|-+.|
T Consensus 17 ~l~~L~~rN~rL~~~L~----~AR~el~~Lkeele~L 49 (51)
T 3m91_A 17 RIDSLAARNSKLMETLK----EARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 33444444444444444 5666666665555544
No 91
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=76.55 E-value=14 Score=24.38 Aligned_cols=47 Identities=15% Similarity=0.268 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSK 96 (203)
Q Consensus 46 s~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~ 96 (203)
.+||..+..+.....++.+.+..+..++..+...|. .+++++.++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~----~~~~~I~~~k~ 54 (60)
T 3htk_A 8 KTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLN----TIRDEVIKKKN 54 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 445555555555555555555555555555544444 44444444433
No 92
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=76.37 E-value=5 Score=26.61 Aligned_cols=21 Identities=10% Similarity=0.311 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028818 60 AEKDSRIAELQSQIESIYSSL 80 (203)
Q Consensus 60 aEKd~~i~~Lq~r~s~Le~~L 80 (203)
.+.+..+++|++|++.|+.+=
T Consensus 13 k~le~~naeLEervstLq~EN 33 (42)
T 2oqq_A 13 KDLENKNSELEERLSTLQNEN 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhH
Confidence 344555666666666665544
No 93
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=75.72 E-value=4.9 Score=33.45 Aligned_cols=40 Identities=18% Similarity=0.379 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 028818 88 QADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (203)
Q Consensus 88 ~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq 127 (203)
.+||.+..+--+.|-..+..+++.+++|+.+|++||+.+=
T Consensus 168 l~EQ~~I~~~l~~ld~~i~~~~~~i~~l~~~k~~l~~~~~ 207 (425)
T 1yf2_A 168 LEEQKQIAKILTKIDEGIEIIEKSINKLERIKKGLMHKLL 207 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666667777778888888999999999998753
No 94
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=75.66 E-value=22 Score=28.88 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHHHH
Q 028818 27 FEQLDVARKITSIAISTRVSDLESEHSA 54 (203)
Q Consensus 27 ~EQLdlarkIts~A~atRVs~LE~E~~~ 54 (203)
++.|-.+|+... ....|+..||..-..
T Consensus 19 eD~L~~~R~el~-~~~~ri~~lE~~r~~ 45 (154)
T 2ocy_A 19 EEQLNKSLKTIA-SQKAAIENYNQLKED 45 (154)
T ss_dssp HHHHHHHHHHHH-HHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 344555555443 335566666654333
No 95
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=74.95 E-value=11 Score=27.22 Aligned_cols=33 Identities=33% Similarity=0.468 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 028818 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (203)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (203)
...++...|..||..|-..|..|..+|..|..+
T Consensus 40 e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~l 72 (78)
T 1gu4_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566788889999999999999988887643
No 96
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=74.48 E-value=18 Score=25.75 Aligned_cols=39 Identities=13% Similarity=0.240 Sum_probs=24.5
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (203)
Q Consensus 42 atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L 80 (203)
..++..||.++..|......=...+..|+.++..|..++
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777665555555666666665555544
No 97
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=74.46 E-value=29 Score=28.09 Aligned_cols=33 Identities=15% Similarity=0.277 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (203)
Q Consensus 48 LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L 80 (203)
+|.+..+--..+..-...|.+|++.+-.+...|
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nl 58 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNL 58 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444444444444444444444444333333
No 98
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=74.46 E-value=4.9 Score=32.00 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=23.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (203)
Q Consensus 46 s~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~ 78 (203)
..||..+..+..++..++..|++|+.|+..+|.
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (192)
T 2gkw_A 3 GLLESQLSRHDQMLSVHDIRLADMDLRFQVLET 35 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356777777777777777777777777666554
No 99
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=74.27 E-value=16 Score=24.92 Aligned_cols=40 Identities=23% Similarity=0.237 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 61 EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNT 104 (203)
Q Consensus 61 EKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~T 104 (203)
-|-..+.+|+.++..|+..-. ....+...|..|...|...
T Consensus 20 rKk~~~~~Le~~v~~L~~~n~----~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 20 RRRELTDTLQAETDQLEDEKS----ALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 455667777777776665443 3333444455555444443
No 100
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=74.12 E-value=9 Score=32.38 Aligned_cols=56 Identities=20% Similarity=0.325 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 028818 55 LRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (203)
Q Consensus 55 LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (203)
+.++|..-|..|..|+.....|..+|. ...+++..|+++-++|.+.++.+.-.++|
T Consensus 11 ~q~ql~~ad~LV~~L~~En~~L~~ql~----~k~~ei~~L~~ql~sl~~~~~~~~~~~~~ 66 (190)
T 4emc_A 11 VKQQIDSADLLVANLVNENFVLSEKLD----TKATEIKQLQKQIDSLNAQVKELKTQTSQ 66 (190)
T ss_dssp ---------CHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 456777778888888888888877776 78888888888888888888876655554
No 101
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=73.77 E-value=23 Score=25.65 Aligned_cols=61 Identities=11% Similarity=0.211 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 028818 58 QLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (203)
Q Consensus 58 ~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (203)
.+..|+..+..|++++...+.... ...+.+.+|..|++.|..++....--.++|..-|..|
T Consensus 15 Em~~~eeel~~lke~l~k~e~~rk----ele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eL 75 (89)
T 3bas_A 15 EMKEQLKQMDKMKEDLAKTERIKK----ELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHL 75 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344566666666666665555444 6677777777777777777444444444444444433
No 102
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=73.65 E-value=21 Score=27.12 Aligned_cols=50 Identities=24% Similarity=0.440 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTN 103 (203)
Q Consensus 50 ~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~ 103 (203)
.++..|..++.+.+..+..|+.++..-. .+-..+..+..++..|-..|..
T Consensus 12 e~l~~le~~~~~~~~e~~~L~~~l~eE~----~~R~~aE~~~~~ie~ElEeLTa 61 (97)
T 2eqb_B 12 EDYNTLKRELSDRDDEVKRLREDIAKEN----ELRTKAEEEADKLNKEVEDLTA 61 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554443322 2333555666666666655544
No 103
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=73.41 E-value=22 Score=25.41 Aligned_cols=18 Identities=39% Similarity=0.538 Sum_probs=7.7
Q ss_pred HhhhhhHHHHHHHHHHHH
Q 028818 43 TRVSDLESEHSALRSQLA 60 (203)
Q Consensus 43 tRVs~LE~E~~~LR~~La 60 (203)
.++..||.++..|-.+|+
T Consensus 29 ~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 29 QLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344444444444444443
No 104
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=73.33 E-value=14 Score=24.47 Aligned_cols=36 Identities=17% Similarity=0.355 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 67 AELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVR 106 (203)
Q Consensus 67 ~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvK 106 (203)
.+|+.|+..|+.-. .+..++..-|+.||.-|-+-+|
T Consensus 6 ~eLE~r~k~le~~n----aeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 6 SELENRVKDLENKN----SELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHhc
Confidence 45555555555433 3666666777777777765543
No 105
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=72.50 E-value=31 Score=31.93 Aligned_cols=18 Identities=11% Similarity=0.217 Sum_probs=11.3
Q ss_pred HHHHHHhhhhhHHHHHHH
Q 028818 38 SIAISTRVSDLESEHSAL 55 (203)
Q Consensus 38 s~A~atRVs~LE~E~~~L 55 (203)
..-|..||..|-.++..+
T Consensus 62 er~~~~rIe~L~~~L~~~ 79 (390)
T 1deq_A 62 DQDFTSRINKLRDSLFNY 79 (390)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 356667777776665554
No 106
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=72.31 E-value=9.2 Score=28.21 Aligned_cols=46 Identities=17% Similarity=0.285 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 35 KITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (203)
Q Consensus 35 kIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L 80 (203)
.|+-+++..||-.|=.|-..||..+.--......++.|+..+|.+|
T Consensus 29 nvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 29 NIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555444444444444444444444433
No 107
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=71.98 E-value=2.4 Score=29.17 Aligned_cols=28 Identities=29% Similarity=0.516 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 028818 87 AQADKERLSKENEALTNTVRKLQRDVSK 114 (203)
Q Consensus 87 a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (203)
...++..|.+...+|..-+-.|.|||++
T Consensus 29 lendnanlekdianlekdianlerdvar 56 (56)
T 3he4_A 29 LENDNANLEKDIANLEKDIANLERDVAR 56 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HhcccchHHHHHHHHHHHHHHHHHhhcC
Confidence 3456677777777777777777777753
No 108
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=71.85 E-value=7.1 Score=29.71 Aligned_cols=32 Identities=28% Similarity=0.480 Sum_probs=11.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 46 s~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
++|.+++..||+.+. .+..|+.++..|+..|.
T Consensus 2 ~~l~~~~~~l~~~~~----~~~~l~~~~~~l~~~l~ 33 (182)
T 3kqg_A 2 STLNAQIPELKSDLE----KASALNTKIRALQGSLE 33 (182)
T ss_dssp -----------CHHH----HHHHHHHHHHHHHHHHH
T ss_pred CchhhhHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 567788888888776 44555555555555553
No 109
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=71.84 E-value=52 Score=28.98 Aligned_cols=59 Identities=15% Similarity=0.108 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 028818 54 ALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (203)
Q Consensus 54 ~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (203)
....+..+.+......++++.......+.+.....+++++|.++...+...+.+-+.-+
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (487)
T 3oja_A 414 AIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATL 472 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHH
Confidence 34444444444455555555555555555555555566666666666655555544333
No 110
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=71.74 E-value=6.8 Score=33.24 Aligned_cols=40 Identities=23% Similarity=0.314 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 028818 87 AQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (203)
Q Consensus 87 a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSL 126 (203)
..++|.+..+--+.+-..+..+.+.+.+|+.+|+.||+.+
T Consensus 353 pl~eQ~~I~~~l~~id~~i~~~~~~i~~L~~lk~~LL~~l 392 (406)
T 1ydx_A 353 SFQLQRKAGKIVFLLDQKLDQYKKELSSLTVIRDTLLKKL 392 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666777778888899999999999999976
No 111
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=71.71 E-value=30 Score=26.15 Aligned_cols=37 Identities=22% Similarity=0.234 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 028818 88 QADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (203)
Q Consensus 88 ~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~Lmq 124 (203)
.++...|.+..+.+.+.=-+|+-.++-|+.-|..|+.
T Consensus 67 ~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L~~ 103 (107)
T 2no2_A 67 QRELQVLQGSLETSAQSEANWAAEFAELEKERDSLVS 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333334444444444444444444445555555544
No 112
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=71.32 E-value=18 Score=24.45 Aligned_cols=30 Identities=17% Similarity=0.271 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028818 86 QAQADKERLSKENEALTNTVRKLQRDVSKL 115 (203)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (203)
.....|.+|.+-...--+.+.+|..+|.+|
T Consensus 20 ~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 20 SLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444555555445555555555555544
No 113
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=71.26 E-value=5.3 Score=25.27 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028818 83 KLGQAQADKERLSKENEALTNTVRKLQ 109 (203)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (203)
|+.+..++...|-.||..|.+-|.+|.
T Consensus 1 RM~QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 1 RMAQLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344556666777777777777766664
No 114
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=71.07 E-value=4 Score=35.72 Aligned_cols=41 Identities=20% Similarity=0.257 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 028818 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (203)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (203)
.|++....++..|...|..|..+.|.+.+++.+|+.==+.|
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778888888888888888999998888887775543333
No 115
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=70.70 E-value=34 Score=33.05 Aligned_cols=42 Identities=29% Similarity=0.359 Sum_probs=25.8
Q ss_pred HHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVS-DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 40 A~atRVs-~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
....-|+ .||..+..|+.++...-..|..||..|..+-..+|
T Consensus 106 NtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQ 148 (562)
T 3ghg_A 106 NTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMK 148 (562)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455 77777777777777666666666665555444444
No 116
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=70.41 E-value=29 Score=25.43 Aligned_cols=42 Identities=7% Similarity=0.141 Sum_probs=25.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
||+.++..|--|....-.+...-...+.+++.+...++..+.
T Consensus 6 ~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~ 47 (101)
T 3u59_A 6 AIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQ 47 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 778888777766666555555555555555555555555554
No 117
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=70.03 E-value=7 Score=24.85 Aligned_cols=28 Identities=32% Similarity=0.399 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028818 83 KLGQAQADKERLSKENEALTNTVRKLQR 110 (203)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~r 110 (203)
|+.+..+..++|..+|..|++.|.+|..
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4556667777888888888888877653
No 118
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=70.02 E-value=14 Score=33.50 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccC
Q 028818 93 RLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDED 131 (203)
Q Consensus 93 kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d~~ 131 (203)
+|.++...+...++.+...+-+.+..+|.|-..+++-.+
T Consensus 21 ~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 21 ELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRD 59 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 333333333333333334444455555555555555444
No 119
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=69.79 E-value=65 Score=30.67 Aligned_cols=45 Identities=13% Similarity=0.156 Sum_probs=26.3
Q ss_pred HHHHHHHhhhhhHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 37 TSIAISTRVSDLESEHSA--------------LRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 37 ts~A~atRVs~LE~E~~~--------------LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
+..-+..||.+|-..+.. +...+.++...+.+.+..++++-.+|.
T Consensus 59 qerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe 117 (491)
T 1m1j_A 59 TDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELR 117 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 344566666666555443 355566666666666666665555555
No 120
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=69.76 E-value=22 Score=23.69 Aligned_cols=43 Identities=26% Similarity=0.367 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028818 68 ELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (203)
Q Consensus 68 ~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (203)
++++++..||..+. .. +.++++=-.....+-.||.+-+.+||.
T Consensus 2 dlEekv~~Le~~ld----~L---qTr~ArLlae~~ssq~KlKqRit~lE~ 44 (46)
T 3swy_A 2 ALEEKVEQLGSSLD----TL---QTRFARLLAEYNATQMKMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57788888888775 22 222333333344555677777777775
No 121
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=69.27 E-value=20 Score=24.65 Aligned_cols=47 Identities=15% Similarity=0.191 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 32 VARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSS 79 (203)
Q Consensus 32 larkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~ 79 (203)
...+|++. ....|..+..+++.+-++...=.+.|..|+.|++.+|..
T Consensus 17 ~lEnIv~~-l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~l~~~ 63 (65)
T 3m0d_C 17 VFENIVAV-LNKEVEASHLALATSIHQSQLDRERILSLEQRVVELQQT 63 (65)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-HhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Confidence 33555554 444555555555555333333355556666666666543
No 122
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=69.13 E-value=32 Score=30.50 Aligned_cols=89 Identities=11% Similarity=0.165 Sum_probs=57.6
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 028818 37 TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS--DKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (203)
Q Consensus 37 ts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~--~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (203)
+--.|..|+++++.++..++..+..|.+.+..|+..+..-..-.. ..+ ...-...-|+ .+..+|--|...-+|
T Consensus 303 ~~~~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----e~~~~~~~~~~~~~~ 377 (406)
T 4dyl_A 303 TVESVQHTLTSVTDELAVATEMVFRRQEMVTQLQQELRNEEENTHPRERV-QLLGKRQVLQ----EALQGLQVALCSQAK 377 (406)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCGG-GGHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHH-HHHhHHhhHH----HHHHHHHHHHhHHHH
Confidence 345788999999999999999999999999999877654422111 010 0001111111 123456667777788
Q ss_pred HHHHHHHHHhhccccc
Q 028818 115 LEVFRKTLVQSLKDDE 130 (203)
Q Consensus 115 LE~FKk~LmqSLq~d~ 130 (203)
|++=|-.|-+.|++-.
T Consensus 378 ~~~q~~~~~~~~~~~~ 393 (406)
T 4dyl_A 378 LQAQQELLQTKLEHLG 393 (406)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcC
Confidence 8887777766666543
No 123
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=68.96 E-value=24 Score=29.08 Aligned_cols=34 Identities=15% Similarity=0.286 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 028818 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFR 119 (203)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FK 119 (203)
...++...|.+++..|...+..|.....|++.|-
T Consensus 60 ~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e~~ 93 (174)
T 2p22_A 60 HLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQFS 93 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666666666666553
No 124
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=68.28 E-value=38 Score=25.91 Aligned_cols=42 Identities=24% Similarity=0.405 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 35 KITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (203)
Q Consensus 35 kIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~L 76 (203)
|.-.--++.....||+-...||.+-+++..+|.+||.|+...
T Consensus 17 K~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~ 58 (101)
T 1d7m_A 17 KVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDET 58 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445667778888889999999999999999999887643
No 125
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=67.81 E-value=7 Score=24.86 Aligned_cols=27 Identities=11% Similarity=0.263 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028818 83 KLGQAQADKERLSKENEALTNTVRKLQ 109 (203)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (203)
|+.+..++.+.|..+|..|.+-|.+|.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 556677777778888888877776664
No 126
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=67.69 E-value=6.9 Score=24.74 Aligned_cols=26 Identities=4% Similarity=0.132 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028818 84 LGQAQADKERLSKENEALTNTVRKLQ 109 (203)
Q Consensus 84 L~~a~ee~~kL~~E~~~La~TvKkL~ 109 (203)
+.+..+..+.|..+|..|.+.|.+|.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45666677777788887777766653
No 127
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=67.60 E-value=41 Score=28.37 Aligned_cols=57 Identities=21% Similarity=0.338 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 028818 65 RIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (203)
Q Consensus 65 ~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (203)
.|++| +||..|=-.|.+||....--......|+.+|....+.|.++..-=+.+|.+|
T Consensus 71 FigDL-ekVv~LLLsLs~RLaRvenaL~~~~~Er~sL~~K~~~L~~Q~EDAkeLKe~l 127 (190)
T 3thf_A 71 HVDAV-GNITSLLLSLSERLAQTESSLETRQQERGALESKRDLLYEQMEEAQRLKSDI 127 (190)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHhHHHHHHHHHccChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666 3666666666677777777767779999999999999999988888887765
No 128
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=67.47 E-value=9.3 Score=34.11 Aligned_cols=36 Identities=14% Similarity=0.108 Sum_probs=17.6
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (203)
Q Consensus 43 tRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~ 78 (203)
..|...+.++..|+.+|..-+..|.+|+.++..|+.
T Consensus 19 ~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 19 QIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555444555555544444443
No 129
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=66.90 E-value=24 Score=29.85 Aligned_cols=90 Identities=24% Similarity=0.303 Sum_probs=44.2
Q ss_pred hHHHHhhCCCCch---------hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 15 PEEVLQVLPSDPF---------EQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLG 85 (203)
Q Consensus 15 p~eil~vLP~DP~---------EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~ 85 (203)
+++|..+|-.+|+ ++|.|.... ..=||=.|.++.+||++ +..||..+
T Consensus 33 ~~~V~~yL~~~PdFf~~~~~Ll~~L~lph~~-----~~aVSL~erQ~~~LR~r--------------~~~Le~~L----- 88 (252)
T 3e98_A 33 AEQVAAYLSQHPEFFVEHDELIPELRIPHQP-----GDAVSLVERQVRLLRER--------------NIEMRHRL----- 88 (252)
T ss_dssp ---------------------------------------CHHHHHHHHHHHHH--------------HHHHHHHH-----
T ss_pred HHHHHHHHHhCCHHHhhCHHHHHhCCCCCCC-----CCcccHHHHHHHHHHHH--------------HHHHHHHH-----
Confidence 5678899988886 345554432 12245566666666653 33333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHhhcccccC
Q 028818 86 QAQADKERLSKENEALTNTVRKLQRDVS---KLEVFRKTLVQSLKDDED 131 (203)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDva---KLE~FKk~LmqSLq~d~~ 131 (203)
.+....+.+|+.+.+.+..|...+- -++.|-+.|..+|+++=.
T Consensus 89 ---~~Li~~A~~Ne~l~~~~~~l~l~LL~a~sl~~l~~~L~~~l~~~F~ 134 (252)
T 3e98_A 89 ---SQLMDVARENDRLFDKTRRLVLDLLDATSLEDVVSTVEDSLRHEFQ 134 (252)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHTSC
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHCC
Confidence 2345567788899999999988887 588888888888876644
No 130
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=66.72 E-value=43 Score=27.82 Aligned_cols=17 Identities=24% Similarity=0.409 Sum_probs=7.7
Q ss_pred hhhhHHHHHHHHHHHHH
Q 028818 45 VSDLESEHSALRSQLAE 61 (203)
Q Consensus 45 Vs~LE~E~~~LR~~LaE 61 (203)
+..+++++..++.++..
T Consensus 71 ~~~~~a~l~~~~a~l~~ 87 (341)
T 3fpp_A 71 IKEVEATLMELRAQRQQ 87 (341)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 131
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=66.69 E-value=15 Score=33.47 Aligned_cols=56 Identities=23% Similarity=0.223 Sum_probs=36.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028818 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRD 111 (203)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rD 111 (203)
...||.|+..||++..+-++.|..++..+..++.+| .+...+|..|-|++-.|...
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l-----------~~~~~~rr~l~n~~~~l~gn 60 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQL-----------FQSNMERKELHNTVMDLRDN 60 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhCCC
Confidence 356777777777777777777777766655555444 34556777777777666543
No 132
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=66.52 E-value=8.9 Score=25.98 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028818 61 EKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 61 EKd~~i~~Lq~r~s~Le~~L~ 81 (203)
-|-..+.+|+.++..|+.+-.
T Consensus 19 rKk~~~~~Le~~v~~L~~~n~ 39 (62)
T 1jnm_A 19 RKLERIARLEEKVKTLKAQNS 39 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777766655443
No 133
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=66.49 E-value=29 Score=25.27 Aligned_cols=51 Identities=22% Similarity=0.361 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 028818 67 AELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (203)
Q Consensus 67 ~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~Lmq 124 (203)
.+|++||..||..|- .. +.++++=-.....+-.||.+-|.+||.+=+.+.-
T Consensus 3 ~dlEEKv~~LE~sld----~L---QTrfARLLaEy~ssQ~KLKqRit~LE~~~~~~~~ 53 (74)
T 3swf_A 3 MGLEEKVTRMESSVD----LL---QTRFARILAEYESMQQKLKQRLTKVEKFLKPLID 53 (74)
T ss_dssp -CHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 467888999988875 22 2333333444556677888999999987666543
No 134
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=66.47 E-value=27 Score=29.35 Aligned_cols=17 Identities=12% Similarity=0.247 Sum_probs=7.4
Q ss_pred hhhhHHHHHHHHHHHHH
Q 028818 45 VSDLESEHSALRSQLAE 61 (203)
Q Consensus 45 Vs~LE~E~~~LR~~LaE 61 (203)
+..+++++..++.++..
T Consensus 72 l~~~~a~l~~~~a~l~~ 88 (369)
T 4dk0_A 72 LNTRKAALASYQAQLVA 88 (369)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 135
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=66.34 E-value=37 Score=38.79 Aligned_cols=8 Identities=25% Similarity=0.650 Sum_probs=3.7
Q ss_pred HHhhcccc
Q 028818 122 LVQSLKDD 129 (203)
Q Consensus 122 LmqSLq~d 129 (203)
|+.+|..|
T Consensus 2078 Li~gL~~E 2085 (3245)
T 3vkg_A 2078 LLDNLNSE 2085 (3245)
T ss_dssp HHHHHHHH
T ss_pred HHHhhhhc
Confidence 44444444
No 136
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=65.96 E-value=27 Score=23.47 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=15.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (203)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~ 78 (203)
...-|..+..+++.+.++...=...|+.|+.++..++.
T Consensus 24 l~~~v~~~~~~le~~~~q~~~~~~~i~~Le~k~~~l~~ 61 (66)
T 3m0a_A 24 LNREVERVAMTAEACSRQHRLDQDKIEALSSKVQQLER 61 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHH
Confidence 33334444444444433333333444444444444443
No 137
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=65.84 E-value=19 Score=24.13 Aligned_cols=35 Identities=29% Similarity=0.416 Sum_probs=27.1
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (203)
Q Consensus 43 tRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le 77 (203)
.-|.+||.|-..|+.+-.-|...|+-|++.+..|-
T Consensus 10 nevaslenenetlkkknlhkkdliaylekeianlr 44 (49)
T 3he5_A 10 NEVASLENENETLKKKNLHKKDLIAYLEKEIANLR 44 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 45778888888888888888888888877766553
No 138
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=65.72 E-value=7.9 Score=24.62 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028818 83 KLGQAQADKERLSKENEALTNTVRKLQ 109 (203)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (203)
|+.+..+....|..+|+.|.+.|.+|.
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 344556666677777777777666653
No 139
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=65.68 E-value=7.9 Score=24.61 Aligned_cols=27 Identities=11% Similarity=0.157 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028818 83 KLGQAQADKERLSKENEALTNTVRKLQ 109 (203)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (203)
|+.+..+..+.|..+|..|.+.|.+|.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 455666677777778877777766654
No 140
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=65.48 E-value=38 Score=24.87 Aligned_cols=59 Identities=20% Similarity=0.356 Sum_probs=36.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028818 45 VSDLESEHSALRSQLAEKDSRIAEL-QSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQR 110 (203)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~L-q~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~r 110 (203)
=..||.++..++.+-.-. +..+ +..+..|-. .+..+..++.+|.-|.++|...+..+..
T Consensus 32 N~~Le~~i~~l~~~~~~~---~~~~ye~~i~~Lr~----~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 32 NKILLAELEQLKGQGKSR---LGDLYEEEMRELRR----QVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCC---cHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345788888777654322 2222 223333333 3347778888888888888888877754
No 141
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=65.14 E-value=11 Score=31.88 Aligned_cols=39 Identities=8% Similarity=0.188 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 028818 88 QADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (203)
Q Consensus 88 ~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSL 126 (203)
.++|.+..+--+.+-..+..+++-+++|+.+|+.||+.+
T Consensus 166 l~eQ~~I~~~l~~~d~~i~~~~~~~~~l~~~k~~l~~~~ 204 (406)
T 1ydx_A 166 KNEQHAIANTLSVFDERLENLASLIEINRKLRDEYAHKL 204 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555666666677777888888888888865
No 142
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=65.03 E-value=8.8 Score=24.41 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028818 83 KLGQAQADKERLSKENEALTNTVRKLQ 109 (203)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (203)
|+.+..+..+.|.+++..|++.|.+|.
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 456667777788888888888777664
No 143
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=64.72 E-value=18 Score=26.71 Aligned_cols=19 Identities=21% Similarity=0.396 Sum_probs=7.6
Q ss_pred HHHHhhhhhHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQ 58 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~ 58 (203)
.+..||..||.|-..||.+
T Consensus 40 e~~~r~~~Le~EN~~Lr~~ 58 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKK 58 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333
No 144
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=64.37 E-value=49 Score=28.29 Aligned_cols=54 Identities=15% Similarity=0.264 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028818 56 RSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQR 110 (203)
Q Consensus 56 R~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~r 110 (203)
|..|.|--.++..|.+++..++.++. +|+.-+++...|+++-..|+..++.|..
T Consensus 107 R~AL~eaLeEN~~Lh~~ie~l~eEi~-~LkeEn~eLkeLae~~q~la~vi~~l~~ 160 (209)
T 2wvr_A 107 RKALYEALKENEKLHKEIEQKDNEIA-RLKKENKELAEVAEHVQYMAELIERLNG 160 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444555666777777777776663 6666666666667777777777766653
No 145
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=64.23 E-value=8.3 Score=27.55 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 52 HSALRSQLAEKDSRIAELQSQIES 75 (203)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s~ 75 (203)
|+.|...|.+||+.|++|+.++-.
T Consensus 27 I~eLE~~L~~kd~eI~eLr~~LdK 50 (67)
T 1zxa_A 27 IKELEKRLSEKEEEIQELKRKLHK 50 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444333
No 146
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=63.98 E-value=40 Score=31.60 Aligned_cols=61 Identities=16% Similarity=0.261 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 028818 67 AELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (203)
Q Consensus 67 ~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~ 128 (203)
.+|+.+.+.+-.++. +++..-++...|..|-..|...++.|...+..+|.=-..++.+|-+
T Consensus 50 ~~l~~~rn~~sk~i~-~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN 110 (485)
T 3qne_A 50 DEHNKKLNSVQKEIG-KRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGN 110 (485)
T ss_dssp HHHHHHHHHHHHHHH-HHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHH-HHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 334444444444332 3333334556777888888888888888888888777777877744
No 147
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=63.63 E-value=55 Score=29.35 Aligned_cols=22 Identities=5% Similarity=0.191 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHH
Q 028818 93 RLSKENEALTNTVRKLQRDVSK 114 (203)
Q Consensus 93 kL~~E~~~La~TvKkL~rDvaK 114 (203)
++..+++.++..-..|.+++.+
T Consensus 80 e~~~~Rd~~a~~k~~Le~~ier 101 (302)
T 3ibp_A 80 EAIVERDEVGARKNAVDEEIER 101 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555445444443
No 148
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=63.35 E-value=9.4 Score=24.13 Aligned_cols=26 Identities=15% Similarity=0.078 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028818 84 LGQAQADKERLSKENEALTNTVRKLQ 109 (203)
Q Consensus 84 L~~a~ee~~kL~~E~~~La~TvKkL~ 109 (203)
+.+..+..++|..+|..|.+.|.+|.
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45556666777777777777766654
No 149
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=62.58 E-value=30 Score=23.19 Aligned_cols=34 Identities=18% Similarity=0.365 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 028818 61 EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (203)
Q Consensus 61 EKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (203)
-|..++.+|+.+|.. |..||..|...+..|...+
T Consensus 19 RKk~~~~~LE~~v~~------------------L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 19 KKKEYVKSLENRVAV------------------LENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHh
Confidence 344667777666553 4455556665555555443
No 150
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=62.56 E-value=8.9 Score=24.65 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028818 84 LGQAQADKERLSKENEALTNTVRKLQRD 111 (203)
Q Consensus 84 L~~a~ee~~kL~~E~~~La~TvKkL~rD 111 (203)
+.+..++...|..+|..|.+.|.+|..-
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3444555556666666666666555443
No 151
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=62.50 E-value=46 Score=30.46 Aligned_cols=66 Identities=14% Similarity=0.166 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 028818 63 DSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (203)
Q Consensus 63 d~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (203)
...+.+|+.+.+.+-.++. +++..-++...|..|-..|...+|.|...+..++.=-..++.+|-+-
T Consensus 44 ~~~~~~l~~~~n~~sk~i~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~ 109 (455)
T 2dq0_A 44 LKEINRLRHERNKIAVEIG-KRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNI 109 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHH-HhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3334445555554444443 33333345567778888888888888888888888777788777543
No 152
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=62.30 E-value=38 Score=25.43 Aligned_cols=57 Identities=23% Similarity=0.378 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028818 53 SALRSQLAEKDSRIAELQSQIESIYSS----LS----DKLGQAQADKERLSKENEALTNTVRKLQ 109 (203)
Q Consensus 53 ~~LR~~LaEKd~~i~~Lq~r~s~Le~~----L~----~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (203)
..||+.+.+|.-.|..|.+.+.....+ ++ -.|.+|+.+...|+..-..|.+--++.|
T Consensus 25 ~~lrq~I~DKQ~~i~~Lt~eLq~A~~eaNpaeIA~~~~~L~qAraDL~~l~r~~av~g~E~RRIN 89 (90)
T 4b6x_A 25 AALRQEIEDKQLMVNNLTDELQDAIDEANPAEIANTSQQLRHARADLADLQRRFAVLRNEDRRIN 89 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 467888888888887776544433221 11 3445555555555555555544444443
No 153
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=61.69 E-value=41 Score=24.00 Aligned_cols=23 Identities=13% Similarity=0.405 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028818 59 LAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 59 LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
|..=...|..|+.++..|+..+.
T Consensus 24 le~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444556666666666666664
No 154
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=61.06 E-value=7.8 Score=34.57 Aligned_cols=40 Identities=10% Similarity=0.206 Sum_probs=24.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (203)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L 80 (203)
|..+|..+|+++..|+..|.+.+..|.+|+.++..|+..+
T Consensus 9 lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~ 48 (319)
T 1fzc_C 9 YEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQC 48 (319)
T ss_dssp -CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666667777777666666666666665555554433
No 155
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=60.78 E-value=12 Score=23.29 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHH
Q 028818 93 RLSKENEALTNTVRKLQRDVSKLEV 117 (203)
Q Consensus 93 kL~~E~~~La~TvKkL~rDvaKLE~ 117 (203)
.|.+|-..|..-|.+|+..|.+||.
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666677777777777664
No 156
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=60.00 E-value=84 Score=27.07 Aligned_cols=41 Identities=20% Similarity=0.239 Sum_probs=26.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
|..||+-|=.|++.+-...+.+...+..-=+.|-..|..++
T Consensus 67 IsdklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~svq 107 (234)
T 3plt_A 67 VTDKLGVLIYELGELQDQFIDKYDQYRVTLKSIRNIEASVQ 107 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45677777777777777777666665554455555566665
No 157
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=59.72 E-value=79 Score=26.67 Aligned_cols=50 Identities=20% Similarity=0.170 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Q 028818 48 LESEHSALRSQLA-EKDSRIAELQSQIESIYSSLS-----DKLGQAQADKERLSKE 97 (203)
Q Consensus 48 LE~E~~~LR~~La-EKd~~i~~Lq~r~s~Le~~L~-----~rL~~a~ee~~kL~~E 97 (203)
|+.++......+. =|+.+|..+++++..-...-. .-|-++-.++.+|+-|
T Consensus 82 ~D~~~~~i~~~ln~~r~~~i~~lk~~Ie~~k~~q~~~~~~~~Lf~~~kEn~al~lE 137 (214)
T 2cly_A 82 ADKLNEQKIAQLEEVKQASIKQIQDAIDMEKSQQALVQKRHYLFDVQRNNIAMALE 137 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666665 577888888888876443322 3444455555555543
No 158
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=59.41 E-value=40 Score=23.90 Aligned_cols=34 Identities=38% Similarity=0.628 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028818 84 LGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (203)
Q Consensus 84 L~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (203)
|..++.+..+|-+-|++|..-++.+++.+.+|-+
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQs 55 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQA 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHh
Confidence 4466666777777777777777777777766654
No 159
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=59.07 E-value=38 Score=27.55 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhhhHH-HHHHHHHHHHh
Q 028818 98 NEALTNTVRKLQRDVS-KLEVFRKTLVQ 124 (203)
Q Consensus 98 ~~~La~TvKkL~rDva-KLE~FKk~Lmq 124 (203)
+..|.--+..|...|. ++|.||+.|.-
T Consensus 134 r~~L~Py~eelr~kl~~~~eeLr~~l~P 161 (191)
T 1nfn_A 134 RVRLASHLRKLRKRLLRDADDLQKRLAV 161 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhHH
Confidence 3344444444443333 67777777643
No 160
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=58.91 E-value=53 Score=24.39 Aligned_cols=51 Identities=18% Similarity=0.281 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 57 SQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL 108 (203)
Q Consensus 57 ~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL 108 (203)
..|.+--..+..|.+++..++.++. +|+.-.++...|+..-.-|+.-+++|
T Consensus 31 ~AL~eaL~EN~~Lh~~ie~~~eEi~-~Lk~en~~L~elA~~~q~la~~i~~L 81 (83)
T 1wlq_A 31 KALYEALKENEKLHKEIEQKDSEIA-RLRKENKDLAEVAEHVQYMAEVIERL 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555556666666666666653 55555555555666666666666555
No 161
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=58.79 E-value=92 Score=28.53 Aligned_cols=32 Identities=6% Similarity=0.105 Sum_probs=18.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQS 71 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~ 71 (203)
.|.+.+..||.-+..+-..-.+-...+..|+.
T Consensus 35 ~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~ 66 (409)
T 1m1j_C 35 TTDGELLEIEGLLQQATNSTGSIEYLIQHIKT 66 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777766666555555555555544443
No 162
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=58.63 E-value=13 Score=23.61 Aligned_cols=27 Identities=11% Similarity=0.326 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028818 83 KLGQAQADKERLSKENEALTNTVRKLQ 109 (203)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (203)
|+.+..+..+.|..+|..|.+.|.+|.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHH
Confidence 556666777777778877777766553
No 163
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=58.38 E-value=21 Score=22.88 Aligned_cols=13 Identities=23% Similarity=0.501 Sum_probs=5.7
Q ss_pred hhhhhHHHHHHHH
Q 028818 44 RVSDLESEHSALR 56 (203)
Q Consensus 44 RVs~LE~E~~~LR 56 (203)
||++||.-+..|-
T Consensus 2 RMnQLE~KVEeLl 14 (36)
T 1kd8_B 2 KVKQLKAKVEELK 14 (36)
T ss_dssp CHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHH
Confidence 4444444444433
No 164
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=58.28 E-value=26 Score=25.12 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028818 64 SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (203)
Q Consensus 64 ~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (203)
+.|.+|+.|++-.|..+. ...+...+.+++.+.|...++.|...+..++.
T Consensus 14 ~Ri~~LE~klAfqE~tIe----eLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 14 ARLVELETRLSFQEQALT----ELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344455555554444443 66666677777777777777777766665553
No 165
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=57.95 E-value=39 Score=22.58 Aligned_cols=12 Identities=33% Similarity=0.459 Sum_probs=6.1
Q ss_pred hhhhHHHHHHHH
Q 028818 45 VSDLESEHSALR 56 (203)
Q Consensus 45 Vs~LE~E~~~LR 56 (203)
|..||.++..|.
T Consensus 24 ~~~LE~~v~~L~ 35 (55)
T 1dh3_A 24 VKSLENRVAVLE 35 (55)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445555555444
No 166
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=57.79 E-value=51 Score=23.83 Aligned_cols=12 Identities=33% Similarity=0.587 Sum_probs=4.5
Q ss_pred HHHHHHHHhhhH
Q 028818 101 LTNTVRKLQRDV 112 (203)
Q Consensus 101 La~TvKkL~rDv 112 (203)
|...|..|.-++
T Consensus 68 LE~kvesL~eEl 79 (86)
T 3swk_A 68 LERKVESLQEEI 79 (86)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 167
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=57.78 E-value=43 Score=26.05 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 51 EHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (203)
Q Consensus 51 E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L 80 (203)
|+..|+.+|...++.+...+..+..|...+
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei 54 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEA 54 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455565555544444444444444444333
No 168
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=57.70 E-value=49 Score=23.59 Aligned_cols=44 Identities=9% Similarity=0.104 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 028818 65 RIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (203)
Q Consensus 65 ~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (203)
....++..+..+|.+|+ .+..+.+....|-..|-+.=-+|.-++
T Consensus 6 e~~~~~~~i~~lE~eL~----~~r~e~~~ql~EYq~LlniKl~Le~EI 49 (74)
T 2xv5_A 6 ERDTSRRLLAEKEREMA----EMRARMQQQLDEYQELLDIKLALDMEI 49 (74)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666665 555555555556666665544555444
No 169
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=57.33 E-value=17 Score=25.01 Aligned_cols=34 Identities=32% Similarity=0.463 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 028818 61 EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (203)
Q Consensus 61 EKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (203)
-|..++.+|+.++.. |..||..|...|..|...|
T Consensus 27 RK~~~~~~Le~~v~~------------------L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 27 RKLQRMKQLEDKVEE------------------LLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHH
Confidence 456666777666554 3455556665555555444
No 170
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=57.26 E-value=49 Score=23.53 Aligned_cols=50 Identities=14% Similarity=0.203 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 028818 73 IESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (203)
Q Consensus 73 ~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (203)
+..++..+...+.........|..+...+-..+-...++-..|=+.|-.|
T Consensus 17 l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~L 66 (84)
T 1gk4_A 17 MREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMAL 66 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333344455556666666666666666666666666666666443
No 171
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=56.85 E-value=25 Score=23.66 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 50 SEHSALRSQLAEKDSRIAELQSQIESI 76 (203)
Q Consensus 50 ~E~~~LR~~LaEKd~~i~~Lq~r~s~L 76 (203)
+++..||..++|=...+.+|++++..|
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555444444444444444433
No 172
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=56.49 E-value=21 Score=25.37 Aligned_cols=61 Identities=8% Similarity=0.155 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028818 54 ALRSQLAEKDSRIAELQSQIESIYSSLSDKLG---QAQADKERLSKENEALTNTVRKLQRDVSKL 115 (203)
Q Consensus 54 ~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~---~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (203)
.+=.+|...|.++..|.+++..|+.++. ++. ...++...|-++|=.|-+.+-.+-+...+-
T Consensus 7 d~I~~Lk~~d~~f~~L~~eH~~LD~~I~-~le~~~~~~~~l~~LKk~KL~LKDeI~~lL~~~~~~ 70 (76)
T 1zhc_A 7 DEISVLKANNPHFDKIFEKHNQLDDDIK-TAEQQNASDAEVSHMKKQKLKLKDEIHSMIIEYREK 70 (76)
T ss_dssp HHHHHSTTTSTTHHHHHHHHHHHHHHHH-HHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHhcCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3345556678888888888888888887 111 111267778888777777766665554443
No 173
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=56.36 E-value=30 Score=25.84 Aligned_cols=60 Identities=17% Similarity=0.204 Sum_probs=37.9
Q ss_pred HHHHhhCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 16 EEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (203)
Q Consensus 16 ~eil~vLP~DP~EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le 77 (203)
+.|+-||-.+=|--..+.- +-.=+..|+..|+..+..|...+.++...|..+++.+..+.
T Consensus 70 ~~V~v~lG~g~~vE~~~~e--A~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 70 SEVIMSVGAGVAIKKNFED--AMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp TEEEEEEETTEEEEEEHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCEEEEeeHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555554443333333 22345678888888888888888888887777776666554
No 174
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=56.36 E-value=56 Score=23.88 Aligned_cols=60 Identities=12% Similarity=0.237 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028818 53 SALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (203)
Q Consensus 53 ~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (203)
++||..+....+.+..|+.=-..|..--+ ...+...+|..|.+.|...+..|.+-.+-|+
T Consensus 14 rrl~E~~~q~qaEl~sLrrT~~EL~~G~~----KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 14 WRMKEEMDRAQAELNALKRTEEDLKKGHQ----KLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666677766544443333332 3455567788888888888877776655554
No 175
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=55.81 E-value=63 Score=24.34 Aligned_cols=66 Identities=18% Similarity=0.140 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028818 52 HSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (203)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (203)
+...|+.-.|..+.+.+|+.++..+...-+.++....+...+|.+|-..=...|..|++++..++.
T Consensus 17 L~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~ 82 (107)
T 2no2_A 17 VSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQ 82 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555555554443322444444444444444444433444444444444443
No 176
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=55.75 E-value=26 Score=29.96 Aligned_cols=55 Identities=20% Similarity=0.282 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 028818 61 EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFR 119 (203)
Q Consensus 61 EKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FK 119 (203)
|+.+..++|+.-+-+.-.+++ ..+--.++|+.|++.|...++||..|-+..=+|+
T Consensus 27 ~~~~~~~~~~a~~~s~~s~~~----dl~~s~~~l~ae~~~L~~~l~kLeGn~se~ITfe 81 (206)
T 3oa7_A 27 ERTEALQQLRVNYGSFVSEYN----DLTKSHNTLSKELDNLRSRFGNLEGNTSERITIK 81 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHCCGGGCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHccCCHHhccCHH
Confidence 555666666666666666665 5555566799999999999999999999865554
No 177
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=55.61 E-value=1.1e+02 Score=26.95 Aligned_cols=44 Identities=18% Similarity=0.299 Sum_probs=26.9
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 028818 25 DPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAEL 69 (203)
Q Consensus 25 DP~EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~L 69 (203)
.|.+|+..-++ ..+.+..+-..||..+...|....+.+....+.
T Consensus 350 s~~~~~~~~~~-~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~ 393 (487)
T 3oja_A 350 TVIDQVTLRKQ-AKITLEQKKKALDEQVSNGRRAHAELDGTLQQA 393 (487)
T ss_dssp CCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHh
Confidence 45555554332 233677777788888888887776666555333
No 178
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=55.56 E-value=33 Score=25.49 Aligned_cols=65 Identities=17% Similarity=0.179 Sum_probs=34.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028818 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (203)
Q Consensus 46 s~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (203)
++|++++..|+.+...-+..|.+++.++...+. ....++..+|..|-+.+-+.--.|-.-+|-++
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~------~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA~~r 68 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLKNRDA------KQTVQKHIDLLHTYNEIRDIALGMIGKVAEHE 68 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 455666666655555555555555443332111 13345666666776666666655555555443
No 179
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=55.49 E-value=1.1e+02 Score=27.28 Aligned_cols=87 Identities=15% Similarity=0.221 Sum_probs=47.3
Q ss_pred HhhCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Q 028818 19 LQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLA----EKDSRIAELQSQIESIYSSLSDKLGQ--AQADKE 92 (203)
Q Consensus 19 l~vLP~DP~EQLdlarkIts~A~atRVs~LE~E~~~LR~~La----EKd~~i~~Lq~r~s~Le~~L~~rL~~--a~ee~~ 92 (203)
|+.=|+|+-..=.|.- ...+++.++..+-..+..+|..+. ..-..|..|=+++..|..++. +... .-..-+
T Consensus 56 la~~P~~~~~R~~vl~--~a~~La~~~n~~~~~L~~~~~~~n~~i~~~V~~iN~l~~qIa~LN~qI~-~~~~~~~g~~~n 132 (463)
T 2d4y_A 56 LVSNAEDPAARQALIG--KAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQIS-RMTGVGAGASPN 132 (463)
T ss_dssp HHHTTTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHC--------C
T ss_pred HHhCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhccCCCCCch
Confidence 4456776654444443 455777777777777777776554 233344555555555555553 1111 124455
Q ss_pred HHHHHHHHHHHHHHHH
Q 028818 93 RLSKENEALTNTVRKL 108 (203)
Q Consensus 93 kL~~E~~~La~TvKkL 108 (203)
.|..+|+.|...+-++
T Consensus 133 dLlDqRD~ll~eLS~~ 148 (463)
T 2d4y_A 133 DLLDQRDQLVSELNKI 148 (463)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhh
Confidence 6777777776665554
No 180
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=54.77 E-value=18 Score=28.38 Aligned_cols=32 Identities=22% Similarity=0.323 Sum_probs=20.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (203)
Q Consensus 46 s~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le 77 (203)
..|+..+..|...+..++..|.+|++++..++
T Consensus 6 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (192)
T 1ca9_A 6 EALSSKVQQLERSIGLKDLAMADLEQKVLEME 37 (192)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555555666667777777777776665443
No 181
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=54.66 E-value=58 Score=23.55 Aligned_cols=76 Identities=12% Similarity=0.254 Sum_probs=51.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---------------DKLGQAQADKERLSKENEALTNTV 105 (203)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---------------~rL~~a~ee~~kL~~E~~~La~Tv 105 (203)
|--.|..|=.|+.+.=..+.|+|....++..++...-..+. .++.....+...+.+||=.|++++
T Consensus 9 yld~ie~LP~El~r~~~~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~l~~I~~~~~~~~~l~dEKv~lA~~~ 88 (104)
T 4afl_A 9 YLDSIENLPFELQRNFQLMRDLDQRTEDLKAEIDKLATEYMSSARSLSSEEKLALLKQIQEAYGKCKEFGDDKVQLAMQT 88 (104)
T ss_dssp HHHSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888888888888888877777665543332 345566677788888998888775
Q ss_pred HH-HhhhHHHHH
Q 028818 106 RK-LQRDVSKLE 116 (203)
Q Consensus 106 Kk-L~rDvaKLE 116 (203)
-- +.|.+.+|+
T Consensus 89 ~dlvdkhirrLD 100 (104)
T 4afl_A 89 YEMVDKHIRRLD 100 (104)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 43 344444444
No 182
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=54.26 E-value=36 Score=22.97 Aligned_cols=29 Identities=21% Similarity=0.499 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028818 89 ADKERLSKENEALTNTVRKLQRDVSKLEV 117 (203)
Q Consensus 89 ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (203)
.++-+|.....+|...+-.|.-++++||+
T Consensus 17 kdnlqlerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 17 KDNLQLERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 34444555555566666666666666654
No 183
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=54.14 E-value=72 Score=24.47 Aligned_cols=73 Identities=18% Similarity=0.264 Sum_probs=43.0
Q ss_pred hhhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028818 46 SDLESEHSALRSQLAEKD--------SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (203)
Q Consensus 46 s~LE~E~~~LR~~LaEKd--------~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (203)
..||.|..+|.+.|..-| +..++|..-|..|-..++..|..+.-+.+.+-.=..+=--..++...|+.||+.
T Consensus 16 ~tLe~Eta~L~~al~~edsd~E~~~~rilhdl~seV~~LK~dv~~~L~k~~~e~qe~~~FIKa~kvL~~rns~DI~~ire 95 (101)
T 4aj5_1 16 STLDCETARLQRALDGEESDFEDYPMRILYDLHSEVQTLKDDINILLDKARLENQEGIDFIKATKVLMEKNSMDIMKIRE 95 (101)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 568999999999888322 345788888888877777444444333332222222222223444557777765
Q ss_pred H
Q 028818 118 F 118 (203)
Q Consensus 118 F 118 (203)
|
T Consensus 96 ~ 96 (101)
T 4aj5_1 96 Y 96 (101)
T ss_dssp H
T ss_pred H
Confidence 4
No 184
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=53.94 E-value=1.3e+02 Score=27.62 Aligned_cols=17 Identities=6% Similarity=0.098 Sum_probs=8.0
Q ss_pred hhhhhHHHHHHHHHHHH
Q 028818 44 RVSDLESEHSALRSQLA 60 (203)
Q Consensus 44 RVs~LE~E~~~LR~~La 60 (203)
+|+++=+++..|+..+.
T Consensus 49 elsn~ts~v~~Lvk~iq 65 (409)
T 1m1j_C 49 QATNSTGSIEYLIQHIK 65 (409)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444445555554444
No 185
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=53.90 E-value=20 Score=25.98 Aligned_cols=14 Identities=29% Similarity=0.477 Sum_probs=5.1
Q ss_pred HHhhhhhHHHHHHH
Q 028818 42 STRVSDLESEHSAL 55 (203)
Q Consensus 42 atRVs~LE~E~~~L 55 (203)
..||..||.|-..|
T Consensus 42 ~~r~~~L~~eN~~L 55 (78)
T 1gu4_A 42 QHKVLELTAENERL 55 (78)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 186
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=53.86 E-value=1.2e+02 Score=28.50 Aligned_cols=88 Identities=11% Similarity=0.133 Sum_probs=59.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH---------HHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSK---------ENEALTNT 104 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~------~rL~~a~ee~~kL~~---------E~~~La~T 104 (203)
-+..-+..||..+..+-+.-.+-.+.|..|+.-+...+.... .+-+..+|++.+..+ -.+.|.+.
T Consensus 92 ~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~n~~~~~~s~~mle~~~~~~~~~~~~~~~~~i~~l~~~ 171 (461)
T 3ghg_B 92 PIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVVNEYSSELEKHQLYIDETVNSNIPTNLRVLRSI 171 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHHTHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHH
Confidence 577778888888888888878888888888777776666555 223344555544444 33567777
Q ss_pred HHHHhhhHHHHHHHHHHHHhhcc
Q 028818 105 VRKLQRDVSKLEVFRKTLVQSLK 127 (203)
Q Consensus 105 vKkL~rDvaKLE~FKk~LmqSLq 127 (203)
+.++++.|.+|+.--.+++..-+
T Consensus 172 ~~~~~~~i~~l~~~~~~~~~~c~ 194 (461)
T 3ghg_B 172 LENLRSKIQKLESDVSAQMEYCR 194 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHhhhhhcc
Confidence 77777777777776666665443
No 187
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=52.87 E-value=22 Score=26.79 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=20.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQ 72 (203)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r 72 (203)
+..|+..|..|+..|..+=.+=|++|..++..
T Consensus 4 ~~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~ 35 (106)
T 2aze_B 4 MGGRLEGLTQDLRQLQESEQQLDHLMNICTTQ 35 (106)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777666666666666544
No 188
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=52.66 E-value=66 Score=23.64 Aligned_cols=20 Identities=20% Similarity=0.459 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhhhHHHHH
Q 028818 97 ENEALTNTVRKLQRDVSKLE 116 (203)
Q Consensus 97 E~~~La~TvKkL~rDvaKLE 116 (203)
.|..+.+.|+.-.+||.+|+
T Consensus 79 ~R~~~~~klr~Yk~dL~~lk 98 (102)
T 2qyw_A 79 FRNPMMSKLRNYRKDLAKLH 98 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666543
No 189
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=52.60 E-value=42 Score=29.19 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=13.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHH
Q 028818 41 ISTRVSDLESEHSALRSQLAE 61 (203)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaE 61 (203)
+...|..+|.++..|+..|..
T Consensus 42 FRa~l~~~E~~~~~l~~~l~k 62 (407)
T 4h8s_A 42 TRSLLSVFEEDAGTLTDYTNQ 62 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777766653
No 190
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=52.53 E-value=23 Score=22.73 Aligned_cols=28 Identities=32% Similarity=0.372 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028818 83 KLGQAQADKERLSKENEALTNTVRKLQR 110 (203)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~r 110 (203)
|+.+..+..++|..+|..|.+.|.+|..
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4556666777888888888887777654
No 191
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=52.27 E-value=19 Score=28.83 Aligned_cols=85 Identities=14% Similarity=0.240 Sum_probs=51.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----DKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~----~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (203)
++.+.++..+.|+.+|+..|.+=...-.+.+.+...++.+|- +-..+|+.....-..++..+...+.+|.+.+.-
T Consensus 36 ~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e- 114 (135)
T 2e7s_A 36 TLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLRE- 114 (135)
T ss_dssp HHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTH-
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 444566667777777777777655566666666777777666 455556666666666666666666666665543
Q ss_pred HHHHHHHHhhccc
Q 028818 116 EVFRKTLVQSLKD 128 (203)
Q Consensus 116 E~FKk~LmqSLq~ 128 (203)
|..++.++|+
T Consensus 115 ---~e~ll~~lq~ 124 (135)
T 2e7s_A 115 ---KDMLLDTLTL 124 (135)
T ss_dssp ---HHHCC-----
T ss_pred ---HHHHHHHHHH
Confidence 3344555543
No 192
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=52.22 E-value=68 Score=23.60 Aligned_cols=24 Identities=8% Similarity=0.231 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 028818 86 QAQADKERLSKENEALTNTVRKLQ 109 (203)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~ 109 (203)
...++-.+.-++.+.+.-++--+.
T Consensus 50 ~L~~eE~~~w~eyn~~~~ql~e~~ 73 (96)
T 3q8t_A 50 RLDQEEAQYQREYSEFKRQQLELD 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444433333
No 193
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=52.21 E-value=78 Score=24.30 Aligned_cols=20 Identities=25% Similarity=0.400 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028818 51 EHSALRSQLAEKDSRIAELQ 70 (203)
Q Consensus 51 E~~~LR~~LaEKd~~i~~Lq 70 (203)
+|..||.+|.|.++..++++
T Consensus 31 qVdlLKD~LEe~eE~~aql~ 50 (103)
T 4h22_A 31 QVDTLKDMLLELEEQLAESR 50 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555444444
No 194
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=51.89 E-value=1.2e+02 Score=26.31 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028818 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (203)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (203)
-|+..++.+..-|.-+-..|..+|....-.++-|+
T Consensus 112 ~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~ 146 (242)
T 3c9i_A 112 VRVTTAEGEIASLQTNVSALDGRVTTAENNISALQ 146 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred heeecccccchhhhhhhhhhcccccccccchhhhh
Confidence 45556666666666555555555555555554443
No 195
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=51.81 E-value=1.7e+02 Score=27.95 Aligned_cols=67 Identities=19% Similarity=0.186 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 29 QLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKE 97 (203)
Q Consensus 29 QLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E 97 (203)
|=+||| +..|-+.-...-|.-++..+.+=++..++.+.+++|-......+..+|.+-.++.++-.++
T Consensus 15 q~elar--vqkana~aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~ 81 (497)
T 3iox_A 15 QTELAR--VQKANADAKAAYEAAVAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKD 81 (497)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777 5556666666666667777777777777778888777777777665555555554444444
No 196
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=51.69 E-value=21 Score=22.54 Aligned_cols=12 Identities=33% Similarity=0.567 Sum_probs=4.6
Q ss_pred hhhhhHHHHHHH
Q 028818 44 RVSDLESEHSAL 55 (203)
Q Consensus 44 RVs~LE~E~~~L 55 (203)
||++||..+..|
T Consensus 1 RM~QLE~kVEeL 12 (33)
T 3m48_A 1 RMAQLEAKVEEL 12 (33)
T ss_dssp --CHHHHHHHHH
T ss_pred CccHHHHHHHHH
Confidence 344444444444
No 197
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=51.45 E-value=96 Score=25.14 Aligned_cols=32 Identities=19% Similarity=0.121 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028818 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (203)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (203)
..++...++..+.+.|....+.|+.+.+||+.
T Consensus 77 asr~akk~~ea~la~l~~~~~~LeAE~aKLeE 108 (146)
T 2xnx_M 77 INRNLLGNAKLELDQLSSEKEQLTIEKAKLEE 108 (146)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33444444455555555555556666666554
No 198
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=51.43 E-value=71 Score=27.50 Aligned_cols=21 Identities=10% Similarity=0.246 Sum_probs=15.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHH
Q 028818 41 ISTRVSDLESEHSALRSQLAE 61 (203)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaE 61 (203)
+...|..+|.++..|+..|..
T Consensus 19 FR~~l~~~E~~~~~l~~~l~k 39 (385)
T 2q13_A 19 TRSLLGVFEEDATAISNYMNQ 39 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888877764
No 199
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Probab=51.08 E-value=84 Score=24.34 Aligned_cols=72 Identities=21% Similarity=0.320 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHH
Q 028818 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQ-----ADKERLSKENEALTNTVRKLQRDVSK-LEVFR 119 (203)
Q Consensus 49 E~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~-----ee~~kL~~E~~~La~TvKkL~rDvaK-LE~FK 119 (203)
+.|...||..|.==+..|.-+ .-++.++. .+++... ++..+....+..|.+.+|++.+-|.| +..++
T Consensus 23 ~~ELeSlK~EL~HfE~rl~K~----rH~~~el~l~~~k~~~~~~~g~~e~~s~~~ek~~~le~k~Kk~~~kV~Kl~~dl~ 98 (109)
T 2fcw_A 23 DKELEAFREELKHFEAKIEKH----NHYQKQLEIAHEKLRHAESVGDGERVSRSREKHALLEGRTKELGYTVKKHLQDLS 98 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677888876333333222 22333332 2221111 22334456688888888888888888 46677
Q ss_pred HHHHh
Q 028818 120 KTLVQ 124 (203)
Q Consensus 120 k~Lmq 124 (203)
..+++
T Consensus 99 ~rI~~ 103 (109)
T 2fcw_A 99 GRISR 103 (109)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77765
No 200
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=50.80 E-value=44 Score=24.56 Aligned_cols=54 Identities=22% Similarity=0.382 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhHHHHHH
Q 028818 60 AEKDSRIAELQSQIESIYSSLSDKLGQAQADKERL-SKENEALTNTVRKLQRDVSKLEV 117 (203)
Q Consensus 60 aEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL-~~E~~~La~TvKkL~rDvaKLE~ 117 (203)
.+|...|.+++..+..++.-|. +-.-|...+ ...|..+.+.|+.-.+||.+|+.
T Consensus 34 eerk~~i~~ie~~l~EA~ell~----qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~ 88 (102)
T 1vcs_A 34 DEKKQMVANVEKQLEEARELLE----QMDLEVREIPPQSRGMYSNRMRSYKQEMGKLET 88 (102)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH----HHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3555556666555555544443 111111111 24577888888888888887654
No 201
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=50.75 E-value=12 Score=27.26 Aligned_cols=31 Identities=23% Similarity=0.378 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 028818 82 DKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (203)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (203)
+-|..+...+.+|.+.++-|-.-|++|.|+-
T Consensus 36 ~LL~EsEatnarL~eq~~lLK~EIRRlERnq 66 (71)
T 3bbp_D 36 GLLRETEATNAILMEQIKLLKSEIRRLERNQ 66 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHhhH
Confidence 5566888888889998988988888888864
No 202
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=50.56 E-value=43 Score=22.58 Aligned_cols=38 Identities=24% Similarity=0.286 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028818 68 ELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (203)
Q Consensus 68 ~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (203)
+++.+++.+|.+|+ .+..+.+....|-..|-+.=-+|.
T Consensus 4 ~~q~~i~~le~el~----~~r~e~~~q~~eYq~LlniK~~Le 41 (59)
T 1gk6_A 4 QLEDKVEELLSKNY----HLENEVARLKKLVGDLLNVKMALD 41 (59)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34444555555544 344444444444444444333333
No 203
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=49.55 E-value=76 Score=26.31 Aligned_cols=41 Identities=10% Similarity=0.174 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 53 SALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKE 97 (203)
Q Consensus 53 ~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E 97 (203)
.-.|+-+....+.+..||+.+..||..|- ...+++..+.+|
T Consensus 124 E~ireli~~AertV~kLqkeiD~LEDeL~----~eKek~k~i~~e 164 (175)
T 3mud_A 124 EVIRELICYCLDTTAKNEKSIDDLEEKVA----HAKEENLNMHQM 164 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 34444455555555555555555554443 444444444444
No 204
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=49.52 E-value=59 Score=22.11 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 62 KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEAL 101 (203)
Q Consensus 62 Kd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~L 101 (203)
|-..+.+|+.++..|+..-. ....+...|..|+..|
T Consensus 21 Kk~~~~~le~~~~~L~~~N~----~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNE----ALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 34444555555554444333 3334444444444444
No 205
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=49.12 E-value=10 Score=35.77 Aligned_cols=39 Identities=18% Similarity=0.323 Sum_probs=18.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~ 78 (203)
.+..|+-.+|.|....+..|.+-.+.+..|+++...++.
T Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~ 377 (575)
T 2i1j_A 339 EYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQA 377 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 455677777777777777777766666666655554443
No 206
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=49.03 E-value=53 Score=24.46 Aligned_cols=36 Identities=17% Similarity=0.311 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 64 SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTN 103 (203)
Q Consensus 64 ~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~ 103 (203)
..+.+|+.....|..++. ...+++..+.+|++.+-.
T Consensus 48 ~q~~~LE~e~~~L~~e~~----~L~~e~~~~~~e~d~~k~ 83 (90)
T 2wt7_B 48 QQKHHLENEKTQLIQQVE----QLKQEVSRLARERDAYKV 83 (90)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443 344444444444444433
No 207
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=48.78 E-value=1.7e+02 Score=27.25 Aligned_cols=66 Identities=15% Similarity=0.155 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 028818 63 DSRIAELQSQIESIYSSLSDKLGQAQ--------ADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (203)
Q Consensus 63 d~~i~~Lq~r~s~Le~~L~~rL~~a~--------ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (203)
...+.+|+.+.+.+-.++. +++..- ++...|..|-..|...+|.|...+..++.=-..++.+|-+-
T Consensus 83 ~~~~~~l~~~rn~~sk~i~-~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iPN~ 156 (501)
T 1wle_A 83 REQIRSLEEEKEAVTEAVR-ALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQ 156 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHH-HHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3334455555555555443 222221 35567777888888888888888888877777777776543
No 208
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=48.54 E-value=1.3e+02 Score=27.18 Aligned_cols=82 Identities=18% Similarity=0.254 Sum_probs=43.7
Q ss_pred hhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-----H-HHHHHHHHHHHhh
Q 028818 44 RVSDLESEHSALRSQLAEK-----DSRIAELQSQIESIYSSLS--DKLGQAQADKERLSK-----E-NEALTNTVRKLQR 110 (203)
Q Consensus 44 RVs~LE~E~~~LR~~LaEK-----d~~i~~Lq~r~s~Le~~L~--~rL~~a~ee~~kL~~-----E-~~~La~TvKkL~r 110 (203)
|+..++.+...|-.++++- ......+-++++.|+.-+. ..+....++...|.+ | +.....-++.|..
T Consensus 4 ~l~~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~~D~e~~~~a~~e~~~l~~ 83 (354)
T 3d5a_X 4 KLDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLLDDPELKEMAKAEREALLA 83 (354)
T ss_dssp HHHHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 4555556666666555532 2334445555555555444 344444444433322 1 2334556778888
Q ss_pred hHHHHHH-HHHHHHhh
Q 028818 111 DVSKLEV-FRKTLVQS 125 (203)
Q Consensus 111 DvaKLE~-FKk~LmqS 125 (203)
.+.+||. ++.-|+-+
T Consensus 84 ~~~~le~~l~~lLlp~ 99 (354)
T 3d5a_X 84 RKEALEKELERHLLPK 99 (354)
T ss_dssp HHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhcCCC
Confidence 8888885 66655543
No 209
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=48.28 E-value=82 Score=23.44 Aligned_cols=27 Identities=19% Similarity=0.107 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028818 90 DKERLSKENEALTNTVRKLQRDVSKLE 116 (203)
Q Consensus 90 e~~kL~~E~~~La~TvKkL~rDvaKLE 116 (203)
+.+......+.|...+.|+..-|+.||
T Consensus 63 ~L~e~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 63 QIAETLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444445555555555555555554
No 210
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=48.28 E-value=39 Score=21.65 Aligned_cols=12 Identities=33% Similarity=0.504 Sum_probs=5.9
Q ss_pred hhhhhHHHHHHH
Q 028818 44 RVSDLESEHSAL 55 (203)
Q Consensus 44 RVs~LE~E~~~L 55 (203)
||++||..+..|
T Consensus 2 RMnQLE~kVEeL 13 (36)
T 1kd8_A 2 EVKQLEAEVEEI 13 (36)
T ss_dssp CCHHHHHHHHHH
T ss_pred chhHHHHHHHHH
Confidence 455555554443
No 211
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=47.92 E-value=60 Score=30.02 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=20.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQI 73 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~ 73 (203)
-+...+..||..+..+-..-.+-.+.|..|+.-+
T Consensus 35 ~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~ 68 (411)
T 3ghg_C 35 KVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTY 68 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Confidence 4556666777776666666666666666665443
No 212
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=47.81 E-value=41 Score=24.97 Aligned_cols=31 Identities=29% Similarity=0.473 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028818 86 QAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (203)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (203)
.++++|.+|.++...|..-+..|...+..|.
T Consensus 43 eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 43 EALKENEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555544444444444444433
No 213
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=47.53 E-value=93 Score=23.86 Aligned_cols=55 Identities=22% Similarity=0.245 Sum_probs=30.4
Q ss_pred HHHH-HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028818 57 SQLA-EKDSRIAE---LQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (203)
Q Consensus 57 ~~La-EKd~~i~~---Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (203)
.||. ||...+++ |.+++..+|..+. +...+.....+|...+--+...|+++++.|
T Consensus 19 AQLDNEKsal~YqVdlLKD~LEe~eE~~a----ql~Re~~eK~re~e~~Kr~~~~L~~~~~~l 77 (103)
T 4h22_A 19 AQLDNEKTNFMYQVDTLKDMLLELEEQLA----ESRRQYEEKNKEFEREKHAHSILQFQFAEV 77 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3554 67766554 4555665555554 444444445555555555555666655553
No 214
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=47.34 E-value=65 Score=22.01 Aligned_cols=9 Identities=22% Similarity=0.383 Sum_probs=3.5
Q ss_pred HHHHHHhhh
Q 028818 103 NTVRKLQRD 111 (203)
Q Consensus 103 ~TvKkL~rD 111 (203)
.+|..|.-+
T Consensus 63 r~iq~L~~e 71 (77)
T 3trt_A 63 RQVQSLTME 71 (77)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333444433
No 215
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=47.27 E-value=1.1e+02 Score=24.81 Aligned_cols=86 Identities=10% Similarity=0.226 Sum_probs=45.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhHHHHH
Q 028818 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKER----LSKENEALTNTVRKLQRDVSKLE 116 (203)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~k----L~~E~~~La~TvKkL~rDvaKLE 116 (203)
+...|..+|.++..++..|..=-.....+-+-...+..+. ..+.....+-.. +...-..+...+++...-+..+.
T Consensus 19 FR~~l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~-~~f~~~L~~~~~~~~~~~~~d~~~~~~L~~f~~~l~ei~ 97 (265)
T 2q12_A 19 TRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAAT-HLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELS 97 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHGGGGSCCC-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHHHHHHHH
Confidence 5567888888888888877754444433332222222211 122233333111 11112334567777777777788
Q ss_pred HHHHHHHhhcc
Q 028818 117 VFRKTLVQSLK 127 (203)
Q Consensus 117 ~FKk~LmqSLq 127 (203)
+++..|++.++
T Consensus 98 ~~~~~l~~~~~ 108 (265)
T 2q12_A 98 SCHAVLSTQLA 108 (265)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88887777654
No 216
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=47.11 E-value=86 Score=23.34 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 028818 94 LSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (203)
Q Consensus 94 L~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (203)
+..+.+.....+.+|.-++-|++.+=-.|
T Consensus 60 ~~~~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 60 LEPQIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555556666666666666666654433
No 217
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=46.69 E-value=10 Score=25.01 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=15.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAE 61 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaE 61 (203)
.+..||..||..+..|+..|+|
T Consensus 48 ~L~~ri~~Le~~l~~l~~~l~~ 69 (70)
T 1zme_C 48 QLQKDLNDKTEENNRLKALLLE 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4667777777777777766554
No 218
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=46.57 E-value=15 Score=22.13 Aligned_cols=18 Identities=39% Similarity=0.649 Sum_probs=13.9
Q ss_pred HHHHHHHHHhhhHHHHHH
Q 028818 100 ALTNTVRKLQRDVSKLEV 117 (203)
Q Consensus 100 ~La~TvKkL~rDvaKLE~ 117 (203)
.|-..||+|.++|-|||.
T Consensus 5 kldanvkrlekevgkleg 22 (28)
T 4dac_A 5 KLDANVKRLEKEVGKLEG 22 (28)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eccccHHHHHHHHhhhhh
Confidence 466778888888888874
No 219
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=46.43 E-value=64 Score=21.68 Aligned_cols=41 Identities=15% Similarity=0.249 Sum_probs=26.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
+-.+++.||+++..+|..++.--+...+|=.=-..||.++.
T Consensus 5 ~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIa 45 (59)
T 1gk6_A 5 LEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIA 45 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 44577888999888888877665555555444444555443
No 220
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=46.38 E-value=35 Score=22.88 Aligned_cols=27 Identities=19% Similarity=0.210 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028818 89 ADKERLSKENEALTNTVRKLQRDVSKL 115 (203)
Q Consensus 89 ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (203)
.+..+|..||+.|...+..|...++.|
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666665555554443
No 221
>1ztm_A Fusion glycoprotein; fusion protein, 6-helix bundle,trimer, post-fusion, viral PR; HET: NAG; 3.05A {Human parainfluenza virus 3}
Probab=45.92 E-value=65 Score=30.54 Aligned_cols=77 Identities=18% Similarity=0.320 Sum_probs=44.7
Q ss_pred HHHH--HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 30 LDVA--RKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRK 107 (203)
Q Consensus 30 Ldla--rkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKk 107 (203)
|.|| -.||+-+--.+..+.+++|.+||+.+..=.+.+.+|..-++.+-.+++ +.|+. =|+.+.-++.+
T Consensus 102 LGVataaqiTAavAl~qa~~na~~I~~lk~si~~tn~Av~~l~~g~~~l~~av~-----~lQd~-----IN~~i~PaIn~ 171 (490)
T 1ztm_A 102 LGVATSAQITAAVALVEAKQARSDIEKLKEAIRDTNKAVQSVQSSIGNLIVAIK-----SVQDY-----VNKEIVPSIAR 171 (490)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH-----HHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH-----HHHHhhhhhhh
Confidence 6666 778887777888999999999999999999999999999998888886 22222 25677788888
Q ss_pred HhhhHHHHH
Q 028818 108 LQRDVSKLE 116 (203)
Q Consensus 108 L~rDvaKLE 116 (203)
|..+++-++
T Consensus 172 l~C~v~~~~ 180 (490)
T 1ztm_A 172 LGCEAAGLQ 180 (490)
T ss_dssp HHHHHHHHH
T ss_pred cccHhHHHH
Confidence 888887654
No 222
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=45.88 E-value=73 Score=30.26 Aligned_cols=22 Identities=32% Similarity=0.312 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028818 59 LAEKDSRIAELQSQIESIYSSL 80 (203)
Q Consensus 59 LaEKd~~i~~Lq~r~s~Le~~L 80 (203)
|.+|+..|++=+.|...++.+-
T Consensus 482 l~~~~k~~~~~~~~~e~~~~~~ 503 (592)
T 1f5n_A 482 LTEKEKEIEVERVKAESAQASA 503 (592)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555554444
No 223
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=45.79 E-value=1.1e+02 Score=25.91 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHH
Q 028818 98 NEALTNTVRKLQRDVSKLEVFR 119 (203)
Q Consensus 98 ~~~La~TvKkL~rDvaKLE~FK 119 (203)
...|..--..+....++.+++.
T Consensus 257 ~~~l~~~~~~l~~~~~~~~~~~ 278 (357)
T 3rrk_A 257 GEALIALWTRAKDEVARYKAVA 278 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 224
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=45.25 E-value=34 Score=21.54 Aligned_cols=12 Identities=25% Similarity=0.324 Sum_probs=5.7
Q ss_pred hhhhhHHHHHHH
Q 028818 44 RVSDLESEHSAL 55 (203)
Q Consensus 44 RVs~LE~E~~~L 55 (203)
||++||..+..|
T Consensus 1 RMnQLEdKVEel 12 (33)
T 2wq1_A 1 RMKQLEDKIEEN 12 (33)
T ss_dssp CHHHHHHHHHHH
T ss_pred CchHHHHHHHHH
Confidence 445555444444
No 225
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=45.03 E-value=27 Score=26.88 Aligned_cols=62 Identities=13% Similarity=0.201 Sum_probs=39.5
Q ss_pred hHHHHhhCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 15 PEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (203)
Q Consensus 15 p~eil~vLP~DP~EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~ 78 (203)
++.|+-||=.+=|--.++.- +-.-+..|+..|+..+..|...+.++.+.|..++..+..+..
T Consensus 79 ~~~V~v~lG~g~~vE~~~~e--A~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~ 140 (151)
T 2zdi_C 79 KNNAIVSVGSGYAVERSIDE--AISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQ 140 (151)
T ss_dssp TTEEEEEEETTEEEEEEHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CCEEEEEeCCCeEEEecHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555444443333333 233467788888888888888888888888777766665544
No 226
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=45.02 E-value=77 Score=27.11 Aligned_cols=19 Identities=37% Similarity=0.370 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028818 84 LGQAQADKERLSKENEALT 102 (203)
Q Consensus 84 L~~a~ee~~kL~~E~~~La 102 (203)
|..++++|.+|-++...|.
T Consensus 110 L~eaLeEN~~Lh~~ie~l~ 128 (209)
T 2wvr_A 110 LYEALKENEKLHKEIEQKD 128 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344555555554444443
No 227
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.62 E-value=38 Score=30.75 Aligned_cols=33 Identities=15% Similarity=0.344 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028818 85 GQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (203)
Q Consensus 85 ~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (203)
+....+..-|.-|++-|.+..+.|++++.+++.
T Consensus 52 k~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~e 84 (428)
T 4b4t_K 52 KKLEKEYELLTLQEDYIKDEQRHLKRELKRAQE 84 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444455555566666666666655544
No 228
>2vrs_A Sigma-C capsid protein; alpha-helical coiled coil, receptor-binding, triple beta-spiral, viral protein, virion, coiled coil, beta-barrel; 1.75A {Avian reovirus} PDB: 2jjl_A 2bsf_A 2bt7_A 2bt8_A
Probab=44.45 E-value=29 Score=29.77 Aligned_cols=28 Identities=21% Similarity=0.220 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028818 89 ADKERLSKENEALTNTVRKLQRDVSKLE 116 (203)
Q Consensus 89 ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (203)
-+..+|...-..++-+|..|.+-|..||
T Consensus 11 t~v~NlkssVS~~~l~ls~L~~Rv~~le 38 (211)
T 2vrs_A 11 TAISNLKSDISSNGLAITDLQDRVKSLE 38 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 3445666666777777777777777777
No 229
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=44.39 E-value=43 Score=23.79 Aligned_cols=25 Identities=24% Similarity=0.318 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 53 SALRSQLAEKDSRIAELQSQIESIY 77 (203)
Q Consensus 53 ~~LR~~LaEKd~~i~~Lq~r~s~Le 77 (203)
..+...+..|+..|.+|+..+..-+
T Consensus 14 e~~~~~i~~Kde~I~eLE~~L~~kd 38 (67)
T 1zxa_A 14 EDFAKILMLKEERIKELEKRLSEKE 38 (67)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHH
Confidence 4566778888888888875544333
No 230
>3okg_A Restriction endonuclease S subunits; coiled-coil, type I methyltransferase, DNA binding, DNA BIND protein; 1.95A {Thermoanaerobacter tengcongensis}
Probab=44.26 E-value=41 Score=28.02 Aligned_cols=16 Identities=6% Similarity=0.262 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHhhc
Q 028818 111 DVSKLEVFRKTLVQSL 126 (203)
Q Consensus 111 DvaKLE~FKk~LmqSL 126 (203)
.+.+|+.+|+.||+.+
T Consensus 392 ~~~~L~~lk~~LL~k~ 407 (412)
T 3okg_A 392 TEAELKRLEQAILDKA 407 (412)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5677888888887754
No 231
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=44.22 E-value=1.2e+02 Score=24.10 Aligned_cols=79 Identities=18% Similarity=0.151 Sum_probs=34.9
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 27 FEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVR 106 (203)
Q Consensus 27 ~EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvK 106 (203)
-+.+.-.++=.+..+..+....|.=|..|=.--. --.+-.+|+..|+.++. .+.++..+..+|.+.|-..|.
T Consensus 52 ~~~f~~~~~ela~dli~kakqIe~LIdsLPg~~~----seeeQ~~ri~~Le~E~~----~~~~el~~~v~eae~ll~~v~ 123 (151)
T 1yke_B 52 PEEFSNTIDELSTDIILKTRQINKLIDSLPGVDV----SAEEQLRKIDMLQKKLV----EVEDEKIEAIKKKEKLLRHVD 123 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSS----CHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3455444444444555555555555544432110 00111233344444443 444444444555555555555
Q ss_pred HHhhhHH
Q 028818 107 KLQRDVS 113 (203)
Q Consensus 107 kL~rDva 113 (203)
.+-++++
T Consensus 124 ~~l~~ia 130 (151)
T 1yke_B 124 SLIEDFV 130 (151)
T ss_dssp HHHHTTC
T ss_pred HHHHHHH
Confidence 5554443
No 232
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=44.17 E-value=95 Score=22.99 Aligned_cols=60 Identities=25% Similarity=0.342 Sum_probs=29.1
Q ss_pred HHHHHHHhhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028818 37 TSIAISTRVSDLESE--HSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQR 110 (203)
Q Consensus 37 ts~A~atRVs~LE~E--~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~r 110 (203)
..-||..|-...|.+ -..-+++|.. |++++ + ..|..-.+++.+|+++.+.....+++|..
T Consensus 18 aggaFgKrEaA~Ee~YfrqkekEqL~~-------LKkkl---~----~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 18 AGGAFGKREQAEEERYFRARAKEQLAA-------LKKHK---E----NEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH---H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcccHHHHhHHHHHHHHHHHHHHH-------HHHHH---H----HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445677777777776 2222333321 33333 1 12224445555666665555555555544
No 233
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=43.92 E-value=95 Score=22.93 Aligned_cols=45 Identities=16% Similarity=0.263 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028818 65 RIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQ 109 (203)
Q Consensus 65 ~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (203)
.|.+|+-||+.+|.+=. -+|+..-++...|++.-..=-.-++.|.
T Consensus 27 Ei~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~ 74 (81)
T 3qh9_A 27 ELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLH 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHH
Confidence 34555555555555433 5555555555555554433333444443
No 234
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=43.75 E-value=43 Score=22.98 Aligned_cols=16 Identities=25% Similarity=0.218 Sum_probs=9.6
Q ss_pred hhhhHHHHHHHHHHHH
Q 028818 45 VSDLESEHSALRSQLA 60 (203)
Q Consensus 45 Vs~LE~E~~~LR~~La 60 (203)
+..||.++..|...-.
T Consensus 32 ~~~Le~~v~~L~~eN~ 47 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNY 47 (63)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666777766654433
No 235
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=43.57 E-value=41 Score=25.64 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=24.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~L 76 (203)
-|-.|+-.||+|-=.|-.++..++-.|.+|..||..|
T Consensus 53 eLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 53 ELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 3455666677776666666666666677776666655
No 236
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=43.09 E-value=78 Score=24.00 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=20.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 028818 39 IAISTRVSDLESEHSALRSQLAEKDSRI 66 (203)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~LaEKd~~i 66 (203)
.|+..|..+.|.|+..||.++.|....+
T Consensus 7 ~~~~~~~~~~e~e~~~l~~~~~el~~~l 34 (125)
T 1joc_A 7 RALLERCLKGEGEIEKLQTKVLELQRKL 34 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3667778888888888888776655444
No 237
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=42.95 E-value=87 Score=22.18 Aligned_cols=45 Identities=24% Similarity=0.357 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 54 ALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALT 102 (203)
Q Consensus 54 ~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La 102 (203)
.++..|+--++.|..|=+=-+.|-.+| +....+..+|+.||.+|.
T Consensus 17 evK~ALaaSeAkiQQLmkVN~~ls~El----r~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 17 ELKKALATSEAKVQQLMKVNSSLSDEL----RKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHhHhhhHHH----HHHHHHHHHHHhhhhhhc
Confidence 345555555556655543333333333 355566667777777664
No 238
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=42.79 E-value=1.3e+02 Score=23.98 Aligned_cols=19 Identities=16% Similarity=0.237 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028818 52 HSALRSQLAEKDSRIAELQ 70 (203)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq 70 (203)
+++|...+.++...+..|+
T Consensus 88 n~rL~~E~~dR~~L~~~L~ 106 (152)
T 4fla_A 88 NGRLAAELEDRRQLARMLV 106 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443
No 239
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Probab=42.66 E-value=99 Score=29.92 Aligned_cols=40 Identities=8% Similarity=0.215 Sum_probs=22.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (203)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L 80 (203)
+..|-..+|+.+..||..+.+.++.|..|++.-..++-.+
T Consensus 11 ~~~k~~ei~~~v~~lr~~~q~~e~~ik~Le~~Qe~f~~~y 50 (596)
T 1bg1_A 11 VTEKQQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNY 50 (596)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3345555566666666666666665555555544444333
No 240
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=42.19 E-value=28 Score=24.54 Aligned_cols=12 Identities=50% Similarity=0.595 Sum_probs=5.7
Q ss_pred hhhhhHHHHHHH
Q 028818 44 RVSDLESEHSAL 55 (203)
Q Consensus 44 RVs~LE~E~~~L 55 (203)
||..||..+..|
T Consensus 3 rvkaleekvkal 14 (67)
T 1lq7_A 3 RVKALEEKVKAL 14 (67)
T ss_dssp SHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 455555444443
No 241
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=42.10 E-value=36 Score=23.27 Aligned_cols=27 Identities=30% Similarity=0.567 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028818 91 KERLSKENEALTNTVRKLQRDVSKLEV 117 (203)
Q Consensus 91 ~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (203)
...|...|.+|..-+-.|.+|++.||.
T Consensus 26 varlendnanlekdianlekdianler 52 (56)
T 3he4_A 26 VARLENDNANLEKDIANLEKDIANLER 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777777764
No 242
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=41.77 E-value=51 Score=24.50 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028818 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (203)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (203)
.++++|.+|.++...+..-+-.|......|..
T Consensus 35 eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 35 EALKENEKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666655555554444444444433
No 243
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=41.72 E-value=86 Score=21.78 Aligned_cols=40 Identities=15% Similarity=0.374 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 028818 87 AQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (203)
Q Consensus 87 a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSL 126 (203)
..++.+.|.+|+..|..++-.=++-=-+||.+=|.++++.
T Consensus 15 LkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k~~ 54 (56)
T 2w6b_A 15 LKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNM 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4445555555555555555555555555565555555544
No 244
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=41.18 E-value=43 Score=20.79 Aligned_cols=21 Identities=10% Similarity=0.278 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028818 59 LAEKDSRIAELQSQIESIYSS 79 (203)
Q Consensus 59 LaEKd~~i~~Lq~r~s~Le~~ 79 (203)
++.-+...+.|+..+..||.+
T Consensus 10 vaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 10 VAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHh
Confidence 344455555565555555543
No 245
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=41.02 E-value=1.3e+02 Score=23.70 Aligned_cols=49 Identities=31% Similarity=0.477 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 52 HSALRSQLAEKDSR----IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNT 104 (203)
Q Consensus 52 ~~~LR~~LaEKd~~----i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~T 104 (203)
+..||..|.++-.. +.+|+..+..|...|+ .+..+.++|.+++..|...
T Consensus 55 V~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq----~a~ae~erlr~~~~~~~~r 107 (121)
T 3mq7_A 55 VMALMASLDAEKAQGQKKVEELEGEITTLNHKLQ----DASAEVERLRRENQVLSVR 107 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhchhhhhH
Confidence 34555555543333 4555555555544444 5555666666666555443
No 246
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=40.99 E-value=2.3e+02 Score=26.45 Aligned_cols=40 Identities=25% Similarity=0.403 Sum_probs=26.9
Q ss_pred HHHHHH----HHH-HHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 028818 89 ADKERL----SKE-NEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (203)
Q Consensus 89 ee~~kL----~~E-~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~ 128 (203)
++...| .+| -..|...++.|...+..+|.=-..++.+|-+
T Consensus 99 ~~~~~l~~~~~~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN 143 (484)
T 3lss_A 99 EQVEQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEERDKLMLNVGN 143 (484)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 344556 566 7788888888888888888877778877754
No 247
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=40.83 E-value=2.3e+02 Score=26.41 Aligned_cols=35 Identities=11% Similarity=0.097 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccC
Q 028818 97 ENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDED 131 (203)
Q Consensus 97 E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d~~ 131 (203)
+...|...++.|..++..||.--+.+-..|++.--
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~ 151 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRAL 151 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577788888888888887777777766665543
No 248
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=40.63 E-value=1.3e+02 Score=23.72 Aligned_cols=15 Identities=27% Similarity=0.556 Sum_probs=5.9
Q ss_pred HHhhCCCCchhhHHH
Q 028818 18 VLQVLPSDPFEQLDV 32 (203)
Q Consensus 18 il~vLP~DP~EQLdl 32 (203)
++.++|.+||+-|.=
T Consensus 7 ~~~lf~~s~f~~l~~ 21 (227)
T 2olt_A 7 ILGVFAKSPIKPLQE 21 (227)
T ss_dssp -------CTTHHHHH
T ss_pred HHHHhccChHHHHHH
Confidence 566789999887653
No 249
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=40.55 E-value=86 Score=21.80 Aligned_cols=6 Identities=33% Similarity=0.556 Sum_probs=2.2
Q ss_pred HHHHHH
Q 028818 52 HSALRS 57 (203)
Q Consensus 52 ~~~LR~ 57 (203)
...||.
T Consensus 21 f~~Lr~ 26 (83)
T 1nkp_B 21 FHSLRD 26 (83)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 333333
No 250
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=40.32 E-value=57 Score=28.16 Aligned_cols=10 Identities=30% Similarity=0.371 Sum_probs=4.9
Q ss_pred HHHHHHHHHh
Q 028818 115 LEVFRKTLVQ 124 (203)
Q Consensus 115 LE~FKk~Lmq 124 (203)
+|++=+.+|.
T Consensus 71 aenlf~eII~ 80 (233)
T 2yko_A 71 LENTLQDIIQ 80 (233)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555444443
No 251
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=40.25 E-value=42 Score=26.53 Aligned_cols=25 Identities=28% Similarity=0.419 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHH
Q 028818 92 ERLSKENEALTNTVRKLQRDVSKLE 116 (203)
Q Consensus 92 ~kL~~E~~~La~TvKkL~rDvaKLE 116 (203)
..|++.++.|.+-|-+|..+|++++
T Consensus 64 eeL~~ki~eL~~kvA~le~e~~~~e 88 (125)
T 2pms_C 64 EELSDKIDELDAEIAKLEDQLKAAE 88 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666654
No 252
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=40.24 E-value=1.3e+02 Score=23.26 Aligned_cols=78 Identities=17% Similarity=0.155 Sum_probs=37.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 27 FEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVR 106 (203)
Q Consensus 27 ~EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvK 106 (203)
-+.+.-.++=.+..+..+....|.=|..|=.--. --.+-.+|+..|+.++. .+.++..+..+|.+.|-..|.
T Consensus 52 ~~~f~~~~~ela~dli~k~kqIe~LIdsLP~~~~----see~Q~~ri~~L~~E~~----~~~~el~~~v~e~e~ll~~v~ 123 (132)
T 1ykh_B 52 PEEFSNTIDELSTDIILKTRQINKLIDSLPGVDV----SAEEQLRKIDMLQKKLV----EVEDEKIEAIKKKEKLMRHVD 123 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTC----CHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3555555554555566666666655555542210 01111233444444443 444444455555555555555
Q ss_pred HHhhhH
Q 028818 107 KLQRDV 112 (203)
Q Consensus 107 kL~rDv 112 (203)
.+-+++
T Consensus 124 ~~l~~i 129 (132)
T 1ykh_B 124 SMIEDF 129 (132)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 555544
No 253
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=39.96 E-value=60 Score=26.03 Aligned_cols=29 Identities=14% Similarity=0.243 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028818 82 DKLGQAQADKERLSKENEALTNTVRKLQR 110 (203)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~TvKkL~r 110 (203)
-+|..|.+.+.||.+-|.++-.+++-.+-
T Consensus 59 kql~~Ake~~eKlkKKrsSv~gs~~~aHs 87 (136)
T 3ter_A 59 KEMKEAIEMVDRLQKKQGSVLSSLKLATG 87 (136)
T ss_dssp HHHHHHHHHHHHHHHC------CCCCCCS
T ss_pred HHHHHHHHHHHHHHHhhhchheeeeeecC
Confidence 45668888888888888888777655444
No 254
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=39.95 E-value=1.1e+02 Score=22.41 Aligned_cols=20 Identities=25% Similarity=0.222 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028818 61 EKDSRIAELQSQIESIYSSL 80 (203)
Q Consensus 61 EKd~~i~~Lq~r~s~Le~~L 80 (203)
+-=.....|.+++..++.++
T Consensus 31 eaL~EN~~Lh~~ie~~~eEi 50 (79)
T 2zxx_A 31 EALKENEKLHKEIEQKDSEI 50 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433
No 255
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=39.36 E-value=1.1e+02 Score=27.42 Aligned_cols=41 Identities=20% Similarity=0.410 Sum_probs=20.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L 80 (203)
-+.+||..|..--..|-+.|..+...+.+|++++++|.-.|
T Consensus 209 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l 249 (373)
T 3hhm_B 209 KLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDL 249 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHH
Confidence 44555555555555555555555555555555555444433
No 256
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=39.34 E-value=1.1e+02 Score=22.28 Aligned_cols=40 Identities=23% Similarity=0.381 Sum_probs=19.4
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 42 atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
..|+..+|.+-..|..++..=...+.+=+.+-..+..+|.
T Consensus 12 ~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk 51 (79)
T 3cvf_A 12 QQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVG 51 (79)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555444444444444444444443
No 257
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=39.27 E-value=53 Score=21.10 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028818 51 EHSALRSQLAEKDSRIAELQSQ 72 (203)
Q Consensus 51 E~~~LR~~LaEKd~~i~~Lq~r 72 (203)
|-..|-..+..||..|+.|+++
T Consensus 8 ENekLhk~ie~KdeeIa~Lk~e 29 (37)
T 1t6f_A 8 ENEKLHKEIEQKDNEIARLKKE 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3345555556666666655544
No 258
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=38.72 E-value=82 Score=23.04 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028818 86 QAQADKERLSKENEALTNTVRKL 108 (203)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL 108 (203)
.++++|.+|-++...+..-+.+|
T Consensus 31 eaL~EN~~Lh~~ie~~~eEi~~L 53 (79)
T 2zxx_A 31 EALKENEKLHKEIEQKDSEIARL 53 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555544444444433333
No 259
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=38.71 E-value=45 Score=25.52 Aligned_cols=30 Identities=17% Similarity=0.266 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028818 86 QAQADKERLSKENEALTNTVRKLQRDVSKL 115 (203)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (203)
+..+...+|.+|+..|...+++|.+.++..
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555556666666666666666555554
No 260
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=38.49 E-value=65 Score=26.28 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=27.7
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (203)
Q Consensus 43 tRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le 77 (203)
.-+..||.|-.+++..+..|.+.+++|..+...+.
T Consensus 5 qe~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafk 39 (155)
T 2aze_A 5 QECQNLEVERQRRLERIKQKQSQLQELILQQIAFK 39 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999998887655443
No 261
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=38.34 E-value=1.7e+02 Score=24.21 Aligned_cols=60 Identities=18% Similarity=0.242 Sum_probs=45.6
Q ss_pred CCCCchhhHHHHH-HH---HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 22 LPSDPFEQLDVAR-KI---TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 22 LP~DP~EQLdlar-kI---ts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
+|.-|.+|+=--+ += +-.+++.+.-.||.|-..||..-+++|......+.++..|-..+-
T Consensus 2 m~~yple~~~~~k~~r~e~aek~~~~k~~~le~ek~~l~~~e~~r~k~~~h~~~k~~qlre~~d 65 (169)
T 3k29_A 2 MVRYPLEPVLSIKKDRVDRAEKVVKEKRRLLELEQEKLRERESERDKVKNHYMQKIRQLREQLD 65 (169)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4777888863221 11 234789999999999999999999999988888888887766654
No 262
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=38.10 E-value=65 Score=28.38 Aligned_cols=39 Identities=15% Similarity=0.388 Sum_probs=35.5
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 43 tRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
.|+..|...+..++.++...+..++++-.++-.||.+++
T Consensus 216 ~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~ 254 (268)
T 2yo3_A 216 QKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIA 254 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999998886
No 263
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=37.87 E-value=48 Score=20.97 Aligned_cols=12 Identities=17% Similarity=0.473 Sum_probs=5.6
Q ss_pred hhhhhHHHHHHH
Q 028818 44 RVSDLESEHSAL 55 (203)
Q Consensus 44 RVs~LE~E~~~L 55 (203)
||++||..+..|
T Consensus 2 RM~QLEdKVEeL 13 (34)
T 1uo4_A 2 RMKQIEDKGEEI 13 (34)
T ss_dssp -CHHHHHHHHHH
T ss_pred chhHHHHHHHHH
Confidence 555555554444
No 264
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=37.82 E-value=30 Score=23.25 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028818 86 QAQADKERLSKENEALTNTVRKLQRD 111 (203)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rD 111 (203)
...++...|.+||..|...+..|...
T Consensus 31 ~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 31 QVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55566666777777777776666543
No 265
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=37.16 E-value=1.4e+02 Score=27.29 Aligned_cols=34 Identities=15% Similarity=0.105 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccC
Q 028818 98 NEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDED 131 (203)
Q Consensus 98 ~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d~~ 131 (203)
...|...++.|..++..||.--+.+-..|++---
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (455)
T 2dq0_A 71 VDELLAKSREIVKRIGELENEVEELKKKIDYYLW 104 (455)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777777777777766666666655433
No 266
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=37.03 E-value=69 Score=25.36 Aligned_cols=39 Identities=18% Similarity=0.376 Sum_probs=23.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~ 78 (203)
-|-.|+..||.|-=.|-.++..++-.|.+|..||+.|..
T Consensus 69 eLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~g 107 (133)
T 1j1d_C 69 QLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRG 107 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHHc
Confidence 344556666666666666666666666666666665543
No 267
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=36.96 E-value=1.8e+02 Score=26.39 Aligned_cols=86 Identities=14% Similarity=0.180 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH---HH----
Q 028818 32 VARKITSIAISTRVSDLESEHSALRSQLAEK-----DSRIAELQSQIESIYSSLS--DKLGQAQADKERLS---KE---- 97 (203)
Q Consensus 32 larkIts~A~atRVs~LE~E~~~LR~~LaEK-----d~~i~~Lq~r~s~Le~~L~--~rL~~a~ee~~kL~---~E---- 97 (203)
+..+|....-.-++..++.+...|-.++++- ......+-++++.|+..+. ..+....++...|. +|
T Consensus 14 ~~~~~~~~~~~~~l~~~~~r~~el~~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~e~D~ 93 (365)
T 1gqe_A 14 LTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVEADDE 93 (365)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH
Confidence 3444444444455566666666666666543 2344555566666666655 45555555444333 22
Q ss_pred --HHHHHHHHHHHhhhHHHHHH
Q 028818 98 --NEALTNTVRKLQRDVSKLEV 117 (203)
Q Consensus 98 --~~~La~TvKkL~rDvaKLE~ 117 (203)
+..+...++.|...+.+||.
T Consensus 94 e~~~~a~~e~~~l~~~l~~le~ 115 (365)
T 1gqe_A 94 ETFNEAVAELDALEEKLAQLEF 115 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 13355667888888888874
No 268
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=36.82 E-value=1.3e+02 Score=22.56 Aligned_cols=62 Identities=16% Similarity=0.258 Sum_probs=26.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLA-----EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL 108 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~La-----EKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL 108 (203)
..+.+..+|-.|+..||..+. +==+.-+-|+.++..|..+|. .-+..|...+.+...+|+||
T Consensus 20 ~~a~~~~~lk~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele-------~l~~~l~~~k~~F~~~~~~~ 86 (93)
T 3sjb_C 20 ELSKKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEIN-------NLKDEIQSENKAFQAHLHKL 86 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHC----
T ss_pred HhHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666655543 111222344444444444332 33344455555555555554
No 269
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=36.33 E-value=51 Score=29.76 Aligned_cols=41 Identities=15% Similarity=0.237 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 028818 89 ADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (203)
Q Consensus 89 ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (203)
++...|..|-..|...+|.|...+..++.=-..++.+|-+-
T Consensus 68 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~ 108 (425)
T 2dq3_A 68 KDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLLWIPNL 108 (425)
T ss_dssp SCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 44566777788888888888888888887777777777554
No 270
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=36.23 E-value=1e+02 Score=21.83 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhH
Q 028818 92 ERLSKENEALTNTVRKLQRDV 112 (203)
Q Consensus 92 ~kL~~E~~~La~TvKkL~rDv 112 (203)
.+|..|++.|.....-|.+.|
T Consensus 57 ~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 57 RKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 271
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=36.01 E-value=1.9e+02 Score=24.06 Aligned_cols=71 Identities=10% Similarity=0.203 Sum_probs=37.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 028818 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (203)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~Lmq 124 (203)
+..|+.+...|..+.......+..|.+++..+ . +.|-.-|.+-+..-|--||--=+|+..+++.|.+
T Consensus 134 ~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~-----------v--~~K~~~E~~L~~KF~~lLNeKK~KIR~lq~~Ll~ 200 (213)
T 1ik9_A 134 IAENQAKNEHLQKENERLLRDWNDVQGRFEKA-----------V--SAKEALETDLYKRFILVLNEKKTKIRSLHNKLLN 200 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44566666666555554444444444333211 1 1233345555555556666666666666666666
Q ss_pred hccc
Q 028818 125 SLKD 128 (203)
Q Consensus 125 SLq~ 128 (203)
..|+
T Consensus 201 ~~~~ 204 (213)
T 1ik9_A 201 AAQE 204 (213)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 272
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=35.90 E-value=24 Score=26.95 Aligned_cols=55 Identities=13% Similarity=0.299 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 49 ESEHSALRSQLAEKD---SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRK 107 (203)
Q Consensus 49 E~E~~~LR~~LaEKd---~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKk 107 (203)
..+|..|++.++.+. ..|.-|+.++.-....+. .=+.+-.++..|+..|...+-.
T Consensus 37 Q~~ideLKe~i~q~~~~~E~i~vL~aQ~~iY~~DF~----aERaaREk~~~EKe~L~~ql~~ 94 (96)
T 3fx0_A 37 QEVIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQ----AERQAREKLAEKKELLQEQLEQ 94 (96)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHTSSTTSCC------
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----HHHHHHHHHHhhHHHHHHHHHh
Confidence 455667777666555 556666666666555554 3444556666777666655443
No 273
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=35.80 E-value=1.5e+02 Score=26.61 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 028818 89 ADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (203)
Q Consensus 89 ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (203)
++...|..|-..|...+|.|...+..++.=-..++.+|-+-
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~ 104 (421)
T 1ses_A 64 EEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLP 104 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 45566777777778888888888877777667777776543
No 274
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=35.67 E-value=1.3e+02 Score=22.02 Aligned_cols=45 Identities=20% Similarity=0.355 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 61 EKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKL 108 (203)
Q Consensus 61 EKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvKkL 108 (203)
|+...++.|+.-+.+.|..+- ++|....+++..+..+ |-.|..-|
T Consensus 27 ~~~~~~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~ee---LDqTL~EL 74 (77)
T 3mtu_E 27 ERTEALQQLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQM---LDQTLLEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---HHHHHHHh
Confidence 444455555555555555554 4444555555555555 44444444
No 275
>1wlo_A SUFE protein; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; NMR {Thermus thermophilus}
Probab=35.55 E-value=20 Score=27.99 Aligned_cols=46 Identities=26% Similarity=0.356 Sum_probs=36.7
Q ss_pred CCCChHHHHhhCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 028818 11 TFDLPEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAE 61 (203)
Q Consensus 11 ~f~lp~eil~vLP~DP~EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaE 61 (203)
+..=|+||+++=| |=|++|.|...++ .+|.+.|.+=+.++|....+
T Consensus 87 ~G~tp~eIl~~d~-~~~~~lGL~~~LS----psR~nGl~am~~~ik~~a~~ 132 (136)
T 1wlo_A 87 EGESPEAVLEVPP-GFYRGYGLEEFFT----PLRLRGLEAALLRLQAQVRK 132 (136)
T ss_dssp TTCCTTTTTSSCT-TTTTTTTSHHHHT----HHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHhCCH-HHHHHcCchhhcC----chHHHHHHHHHHHHHHHHHH
Confidence 4456899999888 7899999998666 58898888888888776543
No 276
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=35.52 E-value=1.7e+02 Score=28.21 Aligned_cols=62 Identities=16% Similarity=0.177 Sum_probs=41.2
Q ss_pred hhCCCCchh-hHHHHHHHHHHH-HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 20 QVLPSDPFE-QLDVARKITSIA-ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 20 ~vLP~DP~E-QLdlarkIts~A-~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
.+|+.+++- |.+=.-|--+-+ .+.=+...|.|..+.|+.|.+-+..++.+|+|....+.-|+
T Consensus 289 ~ilt~~elkqrqeee~r~~qew~~~hp~~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~ 352 (551)
T 2b5u_A 289 DVLSPDQVKQRQDEENRRQQEWDATHPVEAAERNYERARAELNQANEDVARNQERQAKAVQVYN 352 (551)
T ss_dssp ECCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCHHHHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344554442 233333333333 33446778899999999999999999999999886666665
No 277
>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}
Probab=35.42 E-value=2.7e+02 Score=26.73 Aligned_cols=45 Identities=16% Similarity=0.180 Sum_probs=25.9
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 37 TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 37 ts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
.+.++..+-..+|..+..||....+.++.+..|++.-..+.-.++
T Consensus 6 ~~~~~~~~~~eI~~~v~~l~~~~q~~e~~~k~Le~~Qe~F~~~y~ 50 (585)
T 1y1u_A 6 LVDAMSQKHLQINQRFEELRLITQDTENELKKLQQTQEYFIIQYQ 50 (585)
T ss_dssp -----CCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 444555666667777777777777777777666655555554444
No 278
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=35.41 E-value=91 Score=24.88 Aligned_cols=39 Identities=33% Similarity=0.410 Sum_probs=13.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
++..+++.+|+|...+++++. -.|..|+=++.+++.+|.
T Consensus 34 ~~e~~~~~~~~Elee~kqq~~---~~~d~L~lQ~esmeaalk 72 (130)
T 3cl3_D 34 AASEQARQLESEREALQQQHS---VQVDQLRMQGQSVEAALR 72 (130)
T ss_dssp -----------------CTTT---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 444555556666555555432 234556667777777776
No 279
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=35.40 E-value=1.3e+02 Score=22.09 Aligned_cols=38 Identities=11% Similarity=0.133 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 028818 85 GQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (203)
Q Consensus 85 ~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (203)
.........|..+...+-..+....++-..|=+.|-.|
T Consensus 40 ~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~L 77 (95)
T 3mov_A 40 DNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLAL 77 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555555555655554
No 280
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=35.28 E-value=45 Score=29.02 Aligned_cols=45 Identities=13% Similarity=0.278 Sum_probs=20.7
Q ss_pred HHHHHHHhhhh---hHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 028818 37 TSIAISTRVSD---LESEHSALRSQLAE----KDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 37 ts~A~atRVs~---LE~E~~~LR~~LaE----Kd~~i~~Lq~r~s~Le~~L~ 81 (203)
+..+|..=+.. -+..-..+++++.+ +...++.|+++...|+.++.
T Consensus 151 ~~~~Y~~fl~~~d~~~~~~~e~~~~~~~~~n~~~~eie~L~~~~~~L~eEi~ 202 (315)
T 2ve7_A 151 TIKCYESFMSGADSFDEMNAELQSKLKDLFNVDAFKLESLEAKNRALNEQIA 202 (315)
T ss_dssp HHHHHHHHHHTCSCCHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455544443 22333333344433 34455556555555555553
No 281
>3kpe_A Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus} PDB: 1g2c_A
Probab=35.27 E-value=1e+02 Score=20.84 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 47 ~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
.||+||..|+..+.+=.+.+.+|-.=+..+-.+++
T Consensus 1 ~le~~I~~Lk~ai~~TNeAV~~L~~g~~~la~Av~ 35 (51)
T 3kpe_A 1 HLEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVL 35 (51)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38899999999988888888888777766666664
No 282
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=34.98 E-value=1.8e+02 Score=23.49 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=10.9
Q ss_pred HhhhhhHHHHHHHHHHHH
Q 028818 43 TRVSDLESEHSALRSQLA 60 (203)
Q Consensus 43 tRVs~LE~E~~~LR~~La 60 (203)
.+.+..+.|+.+|...|.
T Consensus 51 ~~~~~~~~e~~~L~~~l~ 68 (154)
T 2ocy_A 51 RELSDRDDEVKRLREDIA 68 (154)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHH
Confidence 445556666666666665
No 283
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=34.93 E-value=91 Score=20.62 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=8.8
Q ss_pred HhhhhhHHHHHHHHHHH
Q 028818 43 TRVSDLESEHSALRSQL 59 (203)
Q Consensus 43 tRVs~LE~E~~~LR~~L 59 (203)
.||.+||+-+..|..++
T Consensus 5 ekv~~Le~~ld~LqTr~ 21 (46)
T 3swy_A 5 EKVEQLGSSLDTLQTRF 21 (46)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555665555544443
No 284
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=34.76 E-value=1.1e+02 Score=22.09 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=8.2
Q ss_pred HhhhhhHHHHHHHHHH
Q 028818 43 TRVSDLESEHSALRSQ 58 (203)
Q Consensus 43 tRVs~LE~E~~~LR~~ 58 (203)
-||.+||+-+..|..+
T Consensus 7 EKv~~LE~sld~LQTr 22 (74)
T 3swf_A 7 EKVTRMESSVDLLQTR 22 (74)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555544443
No 285
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=34.76 E-value=74 Score=27.67 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 028818 48 LESEHSALRSQLAEKDSRIAELQ 70 (203)
Q Consensus 48 LE~E~~~LR~~LaEKd~~i~~Lq 70 (203)
.+.|+..|+.+..+-..+|++|+
T Consensus 183 ~~~eie~L~~~~~~L~eEi~~Le 205 (315)
T 2ve7_A 183 DAFKLESLEAKNRALNEQIARLE 205 (315)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333344443
No 286
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=34.74 E-value=2.3e+02 Score=24.58 Aligned_cols=98 Identities=17% Similarity=0.263 Sum_probs=55.7
Q ss_pred HhhCCCCchhhHHHHHHHHHHHHHHhhhhhHHH--HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 028818 19 LQVLPSDPFEQLDVARKITSIAISTRVSDLESE--HSALRSQL--AEKDSRIAELQSQIESIYSSLS---DKLGQAQADK 91 (203)
Q Consensus 19 l~vLP~DP~EQLdlarkIts~A~atRVs~LE~E--~~~LR~~L--aEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~ 91 (203)
-++||.+-|-|==+-.-|.+-.=..+|..--.| -+..-.|+ .|-|-.+.+-+.|+..++..|. .|+.......
T Consensus 28 ~sILPrNiFS~sYllyVi~qgtDvG~VA~KANeAGqgAYdAQVrNDEQDViL~dHe~rI~a~~a~l~dHE~RIt~~~~~i 107 (242)
T 3c9i_A 28 ASILPRNVFSKSYLLYVIAQGTDVGAIAGKANEAGQGAYDAQVKNDEQDVELADHEARIKQLRIDVDDHESRITANTKAI 107 (242)
T ss_dssp SSSSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhHHHHHHhcccchHHHHhhhhhhhhhhhhHHHhcCcccceeeecchhhhhhhhcccccHHHHhhhhhhhh
Confidence 468999988886665555444222222222222 22333333 3666777788888888888888 6666666555
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHH
Q 028818 92 ERLSKENEALTNTVRKLQRDVSKLE 116 (203)
Q Consensus 92 ~kL~~E~~~La~TvKkL~rDvaKLE 116 (203)
..|.-.--.-.+.+-.|.-+|+-|+
T Consensus 108 a~~e~Rit~~e~~i~~l~~~v~~ld 132 (242)
T 3c9i_A 108 TALNVRVTTAEGEIASLQTNVSALD 132 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhheeecccccchhhhhhhhhhc
Confidence 5554444444444444444444443
No 287
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=34.59 E-value=86 Score=19.72 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=11.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 45 VSDLESEHSALRSQLAEKDSRIAELQSQIE 74 (203)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s 74 (203)
|+.|-..+..|+.|..----.+..|.++++
T Consensus 3 vsalkekvsalkeqflmlmfkvsalkekvs 32 (36)
T 3tq2_A 3 VSALKEKVSALKEQFLMLMFKVSALKEKVS 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443322222333444444
No 288
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=34.30 E-value=34 Score=20.58 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028818 53 SALRSQLAEKDSRIAELQ 70 (203)
Q Consensus 53 ~~LR~~LaEKd~~i~~Lq 70 (203)
++|+++-+.-.++|+.|+
T Consensus 3 rrlkqknarlkqeiaale 20 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALE 20 (28)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHH
Confidence 344444433333344443
No 289
>1ni7_A ER75, hypothetical protein YGDK; RD-structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: d.224.1.1
Probab=34.17 E-value=6.3 Score=31.74 Aligned_cols=50 Identities=14% Similarity=0.182 Sum_probs=39.8
Q ss_pred CCCChHHHHhhCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 028818 11 TFDLPEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDS 64 (203)
Q Consensus 11 ~f~lp~eil~vLP~DP~EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~ 64 (203)
+..=|+||+++=|.|=|++|.|..-++ .+|.+.|.+=+.++|.+..+.-+
T Consensus 100 ~G~tp~eIl~~d~~~f~~~lGL~~~LS----psR~NGl~am~~~ik~~a~~~~~ 149 (155)
T 1ni7_A 100 EGKTAAELQAQSPLALFDELGLRAQLS----ASRSQGLNALSEAIIAATKQVLE 149 (155)
T ss_dssp TTCCHHHHHHSCTHHHHHHHTSSSSSC----HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCHHHHHhCCHHHHHHHcCchhhcC----chHHHHHHHHHHHHHHHHHHHHH
Confidence 445699999998878899999987665 37999999888888887765543
No 290
>1pl5_A Regulatory protein SIR4; parallel coiled coil homodimer, DNA binding protein/transcription complex; 2.50A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=34.09 E-value=76 Score=25.13 Aligned_cols=43 Identities=35% Similarity=0.479 Sum_probs=23.7
Q ss_pred hhhHHHHHHHHHH------HHHHhhhhhHHH-------HHHHHHHHHHHHHHHHHH
Q 028818 27 FEQLDVARKITSI------AISTRVSDLESE-------HSALRSQLAEKDSRIAEL 69 (203)
Q Consensus 27 ~EQLdlarkIts~------A~atRVs~LE~E-------~~~LR~~LaEKd~~i~~L 69 (203)
.-||.||-.|+.- ----|+..|..+ ...-|.++.|||+.|..|
T Consensus 73 ekqlavaneiirslsdevmrneiritslqgdltftkkclenarsqisekdakinkl 128 (142)
T 1pl5_A 73 EKQLAVANEIIRSLSDEVMRNEIRITSLQGDLTFTKKCLENARSQISEKDAKINKL 128 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhHHHHHhhheeeeeeccchhhHHHHHHHHHhhhhhhhHHHHHH
Confidence 3478888776542 122344555544 234466666666666554
No 291
>1no4_A Late, head morphogenesis protein; coiled-coil, viral protein; 2.20A {Bacillus phage PHI29} SCOP: h.1.24.1 PDB: 1noh_A
Probab=34.03 E-value=1.5e+02 Score=22.26 Aligned_cols=51 Identities=22% Similarity=0.332 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 028818 60 AEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (203)
Q Consensus 60 aEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (203)
.|+.+.++.|+.-+.+.=.++. ...---.||.-||+.|+-.--||-|+|--
T Consensus 22 serte~lqqlr~~y~s~~se~~----dlt~s~ekl~ae~~dlivsnsklfrqig~ 72 (97)
T 1no4_A 22 SERTEALQQLRVNYGSFVSEYN----DLTKSHEKLAAEKDDLIVSNSKLFRQIGL 72 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHhccCCeeeecHHHHHHhcc
Confidence 3666777777777776666665 55566678999999999888888887753
No 292
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=33.98 E-value=2e+02 Score=23.65 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=17.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 028818 100 ALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (203)
Q Consensus 100 ~La~TvKkL~rDvaKLE~FKk~LmqSLq 127 (203)
+......+|..-+++.|.-=..|.++|-
T Consensus 125 sp~~L~~~L~~a~~e~eeeS~~l~~~F~ 152 (192)
T 2p22_C 125 GDIALKKKLEQNTKKLDEESSQLETTTR 152 (192)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444556666666666666666666663
No 293
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=33.68 E-value=66 Score=20.34 Aligned_cols=11 Identities=18% Similarity=0.416 Sum_probs=4.9
Q ss_pred hhhhhHHHHHH
Q 028818 44 RVSDLESEHSA 54 (203)
Q Consensus 44 RVs~LE~E~~~ 54 (203)
||++||..+..
T Consensus 2 RMnQLEdKVEe 12 (34)
T 3c3f_A 2 RMXQIEXKLEX 12 (34)
T ss_dssp CHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 44444444433
No 294
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=33.65 E-value=2e+02 Score=23.57 Aligned_cols=57 Identities=16% Similarity=0.314 Sum_probs=42.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRK 107 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKk 107 (203)
-+.+|+..|+.--..|-..|..+...+.+|++++++|--.|. .|.+.++....-++.
T Consensus 100 ~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~-----------qL~K~rD~yl~wL~~ 156 (170)
T 3l4q_C 100 RLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLM-----------QLRKIRDQYLVWLTQ 156 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-----------HHHHHHHHHHHHHHH
Confidence 577888888888888888888888888888888887766664 566666665554443
No 295
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=33.52 E-value=1.6e+02 Score=22.62 Aligned_cols=31 Identities=19% Similarity=0.193 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 51 EHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 51 E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
+|..|+.+...=+..+.+|+..++.+..+.+
T Consensus 46 qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq 76 (112)
T 1x79_B 46 QISALVLRAQASEILLEELQQGLSQAKRDVQ 76 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444555544444444444
No 296
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=33.14 E-value=1.1e+02 Score=23.38 Aligned_cols=42 Identities=10% Similarity=0.244 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 028818 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQA 89 (203)
Q Consensus 48 LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~e 89 (203)
|-.|+...+.++.+=...+.+|+..+..||.+=- .||+...-
T Consensus 9 l~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEi 53 (106)
T 4e61_A 9 IQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEI 53 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444555555555544322 55555443
No 297
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=33.11 E-value=2.8e+02 Score=26.20 Aligned_cols=15 Identities=13% Similarity=0.426 Sum_probs=7.7
Q ss_pred HHHHHHHhhhHHHHH
Q 028818 102 TNTVRKLQRDVSKLE 116 (203)
Q Consensus 102 a~TvKkL~rDvaKLE 116 (203)
.+.++.|+.++..|+
T Consensus 566 ~~~~~~~~~ei~~l~ 580 (592)
T 1f5n_A 566 QKESRIMKNEIQDLQ 580 (592)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555443
No 298
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=32.93 E-value=72 Score=21.50 Aligned_cols=29 Identities=24% Similarity=0.409 Sum_probs=19.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 44 RVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
=++.||.+-..||.++. ++|+++++.+|+
T Consensus 14 ~l~~LEkqF~~LkEqlY---------~ERl~ql~~~Le 42 (49)
T 2xus_A 14 EMLDLEKQFSELKEKLF---------RERLSQLRLRLE 42 (49)
T ss_dssp HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHH
Confidence 46678888888888876 245555555554
No 299
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=32.84 E-value=23 Score=29.90 Aligned_cols=35 Identities=9% Similarity=0.131 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 028818 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (203)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk 120 (203)
...++|.+|.+|+..|......+..--+..+.+|+
T Consensus 23 ~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~ 57 (255)
T 2j5u_A 23 NTYTENQHLKERLEELAQLESEVADLKKENKDLKE 57 (255)
T ss_dssp ---CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666555554444443333344433
No 300
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1
Probab=32.57 E-value=2.9e+02 Score=26.57 Aligned_cols=33 Identities=24% Similarity=0.287 Sum_probs=18.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQ 72 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r 72 (203)
.+..+|..+|.++..|.+.-.+=+=..++++.+
T Consensus 13 ~l~~~~q~~e~~~k~Le~~Qe~f~~~y~~~~~~ 45 (575)
T 1bf5_A 13 NVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNR 45 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 455566666666666655555555555555443
No 301
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=32.55 E-value=1.1e+02 Score=20.36 Aligned_cols=60 Identities=18% Similarity=0.255 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028818 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRD 111 (203)
Q Consensus 48 LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rD 111 (203)
|+.++..|..++..=...+..+...+..+...+. ...++....+.-...|.+.+..|.+-
T Consensus 3 ~~~~~~~le~k~~~~e~iv~~l~~~v~~~~~~le----~~~~q~~~~~~~i~~Le~k~~~l~~~ 62 (66)
T 3m0a_A 3 LLQRCESLEKKTATFENIVCVLNREVERVAMTAE----ACSRQHRLDQDKIEALSSKVQQLERS 62 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH----HHHhhhhHHHhHHHHHHHHHHHHHHH
Confidence 4555555555555444444444444444333332 22233333333344455555555443
No 302
>1nyh_A Regulatory protein SIR4; coiled-coil, transcription regulation, repressor, transcript repressor; 3.10A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=32.50 E-value=92 Score=25.19 Aligned_cols=43 Identities=35% Similarity=0.479 Sum_probs=23.7
Q ss_pred hhhHHHHHHHHHH------HHHHhhhhhHHH-------HHHHHHHHHHHHHHHHHH
Q 028818 27 FEQLDVARKITSI------AISTRVSDLESE-------HSALRSQLAEKDSRIAEL 69 (203)
Q Consensus 27 ~EQLdlarkIts~------A~atRVs~LE~E-------~~~LR~~LaEKd~~i~~L 69 (203)
.-||.||-.|+.- ----|+..|..+ ...-|.++.|||+.|..|
T Consensus 97 ekqlavaneiirslsdevmrneiritslqgdltftkkclenarsqisekdakinkl 152 (166)
T 1nyh_A 97 EKQLAVANEIIRSLSDEVMRNEIRITSLQGDLTFTKKCLENARSQISEKDAKINKL 152 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHhhheeeeeeccchhhHHHHHHHHHhhhhhhhHHHHHH
Confidence 3478888776542 122344455544 234466666666666554
No 303
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=32.37 E-value=1.8e+02 Score=22.73 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=18.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEK 62 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEK 62 (203)
.|-+|+.+||.|...|.++=.++
T Consensus 6 ~V~s~l~~LEaeyq~L~~kE~qr 28 (119)
T 2avr_X 6 SLVGELQALDAEYQNLANQEEAR 28 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47789999999998887765544
No 304
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=32.27 E-value=1.6e+02 Score=22.15 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028818 63 DSRIAELQSQIESIYSSL 80 (203)
Q Consensus 63 d~~i~~Lq~r~s~Le~~L 80 (203)
..+|.+|++++..||..-
T Consensus 53 ~~EI~~L~~eI~~LE~iq 70 (96)
T 1t3j_A 53 EEEIARLSKEIDQLEKMQ 70 (96)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445566666666555543
No 305
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=32.16 E-value=2.9e+02 Score=25.06 Aligned_cols=15 Identities=33% Similarity=0.605 Sum_probs=6.3
Q ss_pred HhhhhhHHHHHHHHH
Q 028818 43 TRVSDLESEHSALRS 57 (203)
Q Consensus 43 tRVs~LE~E~~~LR~ 57 (203)
.++..|...+..++.
T Consensus 9 ~~~~~~~~~~~~~~~ 23 (365)
T 1gqe_A 9 NRIQDLTERSDVLRG 23 (365)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 306
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=32.16 E-value=1.8e+02 Score=22.54 Aligned_cols=16 Identities=31% Similarity=0.362 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 028818 66 IAELQSQIESIYSSLS 81 (203)
Q Consensus 66 i~~Lq~r~s~Le~~L~ 81 (203)
|.+||+.+...|.+|.
T Consensus 37 ieeLQ~Ei~~~E~QL~ 52 (107)
T 2k48_A 37 LQELQENITAHEQQLV 52 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555555554
No 307
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=31.86 E-value=3.4 Score=31.83 Aligned_cols=22 Identities=18% Similarity=0.161 Sum_probs=17.8
Q ss_pred CCCCCChHHHHhhCCCCchhhH
Q 028818 9 GSTFDLPEEVLQVLPSDPFEQL 30 (203)
Q Consensus 9 ~~~f~lp~eil~vLP~DP~EQL 30 (203)
..-..|+++-|.-||.+-|.++
T Consensus 3 ~~~~~~sd~~Lv~m~v~elN~~ 24 (107)
T 3a5t_A 3 HMGTSLTDEELVTMSVRELNQH 24 (107)
T ss_dssp CCCCCCCHHHHHHSCHHHHHHT
T ss_pred CCCCCCCHHHHhcCCHHHHHHH
Confidence 3356889999999999888776
No 308
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=31.10 E-value=2.2e+02 Score=25.48 Aligned_cols=9 Identities=22% Similarity=0.294 Sum_probs=5.0
Q ss_pred CchhhHHHH
Q 028818 25 DPFEQLDVA 33 (203)
Q Consensus 25 DP~EQLdla 33 (203)
+|..++.+-
T Consensus 162 ~~~~rr~~L 170 (517)
T 4ad8_A 162 SPANQRGLL 170 (517)
T ss_dssp SHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 666665543
No 309
>2rr9_C Putative uncharacterized protein UIMC1; Lys63-linked diubiquitin, ubiquitin-interacting motif, ubiqu RAP80, DNA repair, nuclear protein; NMR {Homo sapiens}
Probab=31.08 E-value=1.2e+02 Score=20.21 Aligned_cols=9 Identities=44% Similarity=0.346 Sum_probs=5.3
Q ss_pred hhhHHHHHH
Q 028818 27 FEQLDVARK 35 (203)
Q Consensus 27 ~EQLdlark 35 (203)
.|||.||-|
T Consensus 4 EEq~ALA~k 12 (46)
T 2rr9_C 4 EEQFALALK 12 (46)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 467666653
No 310
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=30.99 E-value=1.9e+02 Score=22.45 Aligned_cols=20 Identities=5% Similarity=0.197 Sum_probs=11.0
Q ss_pred HHHHhhhhhHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQL 59 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~L 59 (203)
.|-..|..+..++..++..+
T Consensus 40 ~F~~~v~~I~~~i~~i~~~v 59 (180)
T 1s94_A 40 EFFEQVEEIRAMIDKISDNV 59 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45556655555555555444
No 311
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=30.99 E-value=1.8e+02 Score=22.21 Aligned_cols=41 Identities=15% Similarity=0.151 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 028818 87 AQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (203)
Q Consensus 87 a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq 127 (203)
..+-..-|.+..+.|...+++|..++.+++.--+++...|+
T Consensus 96 ~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~ 136 (151)
T 2zdi_C 96 IDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQ 136 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666777777777777777777766666655544
No 312
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=30.93 E-value=2.4e+02 Score=26.11 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHH
Q 028818 91 KERLSKENEALTNTVRKLQRDVS 113 (203)
Q Consensus 91 ~~kL~~E~~~La~TvKkL~rDva 113 (203)
..-|+.-.+.+.-.+++|.-|+.
T Consensus 136 ir~Lq~~l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 136 INLLQKNVRDQLVDMKRLEVDID 158 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555555553
No 313
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=30.79 E-value=2.7e+02 Score=24.23 Aligned_cols=66 Identities=18% Similarity=0.222 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 028818 59 LAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (203)
Q Consensus 59 LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSL 126 (203)
+..+.++-.|++.|+..++..+..+...+......|...+-.....++.|-.+-. .++|...|.=+
T Consensus 172 lek~r~~EEea~~K~eeAd~~Y~~~V~~a~~~r~eL~~tk~~~v~~Lr~LI~e~D--~~lk~~t~~~f 237 (279)
T 3qwe_A 172 QERRRRSREEAQAKAQEAEALYQACVREANARQQDLEIAKQRIVSHVRKLVFQGD--EVLRRVTLSLF 237 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 4446677788999999999999988888888888887777666666666655444 25565554433
No 314
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=30.67 E-value=1.5e+02 Score=21.33 Aligned_cols=21 Identities=5% Similarity=0.135 Sum_probs=11.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLA 60 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~La 60 (203)
+|-..|..+..++..|+..+.
T Consensus 9 ~F~~~v~~I~~~i~~i~~~v~ 29 (127)
T 1ez3_A 9 EFFEQVEEIRGFIDKIAENVE 29 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666555443
No 315
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=30.52 E-value=94 Score=26.14 Aligned_cols=21 Identities=14% Similarity=0.297 Sum_probs=15.4
Q ss_pred HHHhhhHHHHHHHHHHHHhhc
Q 028818 106 RKLQRDVSKLEVFRKTLVQSL 126 (203)
Q Consensus 106 KkL~rDvaKLE~FKk~LmqSL 126 (203)
.++.+-.+.|+.||+.||+-+
T Consensus 184 ~~~~~~~~~l~~~k~~ll~~~ 204 (464)
T 2y7c_A 184 ARFEQIPQILKRFRQAVLGGA 204 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555677888999999864
No 316
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=30.02 E-value=1.4e+02 Score=23.56 Aligned_cols=50 Identities=24% Similarity=0.401 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhHHH
Q 028818 65 RIAELQSQIESIYSSLS--------DKLGQAQADKERLSKENEALTN-TVRKLQRDVSK 114 (203)
Q Consensus 65 ~i~~Lq~r~s~Le~~L~--------~rL~~a~ee~~kL~~E~~~La~-TvKkL~rDvaK 114 (203)
+|..|.+|+..+.+.+. ..+.+..+|+++|.+|..+|-+ +..+|+.+-.+
T Consensus 11 Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~q~~~lske~~~ 69 (123)
T 2lf0_A 11 EIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHSQKLSKEAQK 69 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 44555555555555544 4556666666666666666643 23344444333
No 317
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=29.90 E-value=2.4e+02 Score=23.41 Aligned_cols=88 Identities=16% Similarity=0.239 Sum_probs=54.0
Q ss_pred CCchhh----HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 028818 24 SDPFEQ----LDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLG-QAQADKERLSKEN 98 (203)
Q Consensus 24 ~DP~EQ----LdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~-~a~ee~~kL~~E~ 98 (203)
+||++= ||-+.-.+ .++..++..|..|..+|.....+=...+.++-.--..+|.+|-.|.. ..++.+.|+.+-.
T Consensus 117 ~d~~e~i~elfd~~~~~~-~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq 195 (213)
T 1ik9_A 117 ENPAEVIRELIAYALDTI-AENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLH 195 (213)
T ss_dssp SCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 566642 45544332 24555666666666666666655555555665566666777764443 3456667777777
Q ss_pred HHHHHHHHHHhhhH
Q 028818 99 EALTNTVRKLQRDV 112 (203)
Q Consensus 99 ~~La~TvKkL~rDv 112 (203)
+.|.+.++.+..+.
T Consensus 196 ~~Ll~~~~~~~~~~ 209 (213)
T 1ik9_A 196 NKLLNAAQEREKDI 209 (213)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhh
Confidence 78888888777654
No 318
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=29.61 E-value=1.8e+02 Score=25.98 Aligned_cols=58 Identities=16% Similarity=0.189 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028818 55 LRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (203)
Q Consensus 55 LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (203)
.|+.+.++...+ -.++..+...|+.--..+.++...-.++-+.|..++-+||+++.+.
T Consensus 65 ~R~~vl~~a~~L---a~~~n~~~~~L~~~~~~~n~~i~~~V~~iN~l~~qIa~LN~qI~~~ 122 (463)
T 2d4y_A 65 ARQALIGKAEGL---VNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQISRM 122 (463)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555544332 2333334444432223444455555555566666666666666544
No 319
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens}
Probab=29.60 E-value=2.7e+02 Score=27.31 Aligned_cols=38 Identities=11% Similarity=0.182 Sum_probs=22.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (203)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~ 78 (203)
+..+-..++..+..||..+.+-++.|..|+..-..++-
T Consensus 135 ~~~~~~~i~~~v~~lr~~~q~~e~~ik~Le~~Qe~f~~ 172 (683)
T 1yvl_A 135 MLDKQKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDF 172 (683)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666667776666666666555555444443
No 320
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.48 E-value=1.8e+02 Score=21.92 Aligned_cols=91 Identities=21% Similarity=0.278 Sum_probs=51.3
Q ss_pred CchhhHHHHHHHHHH--HHHHhhhhhHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Q 028818 25 DPFEQLDVARKITSI--AISTRVSDLESEH---------SALRSQLAEKDSRIAELQSQIESIYSSLSDKL----GQAQA 89 (203)
Q Consensus 25 DP~EQLdlarkIts~--A~atRVs~LE~E~---------~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL----~~a~e 89 (203)
||-|=-+|...|.++ -|-+-|+.|+.-+ ..||.+|.+..+.+.+|=+..+..=..|. .+ ....+
T Consensus 8 d~~ef~~l~~~is~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~-~~~~~~~~~~~ 86 (130)
T 2dnx_A 8 QLRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELG-SLPLPLSTSEQ 86 (130)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HSCCCSSHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccchH
Confidence 333334577777766 5667788888875 66788888777777777665554444443 11 00111
Q ss_pred -----HHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028818 90 -----DKERLSKENEALTNTVRKLQRDVSKLE 116 (203)
Q Consensus 90 -----e~~kL~~E~~~La~TvKkL~rDvaKLE 116 (203)
...||.+|-....+.-.+++|..+.-|
T Consensus 87 r~~k~q~~KL~~dF~~~L~~FQ~~Qr~~aeke 118 (130)
T 2dnx_A 87 RQQRLQKERLMNDFSAALNNFQAVQRRVSEKE 118 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234455554555555555555554433
No 321
>2qm4_A Non-homologous END-joining factor 1; XRCC4 like factor, homodimer, beta-sandwich, coiled-coil, recombination; HET: MSE; 2.30A {Homo sapiens} PDB: 3sr2_C* 2r9a_A 3q4f_E* 3rwr_D*
Probab=29.19 E-value=56 Score=27.77 Aligned_cols=39 Identities=21% Similarity=0.228 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 32 VARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQS 71 (203)
Q Consensus 32 larkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~ 71 (203)
|.+.|+---+ .=+..|+.++..|-..|.+||.+|.+++.
T Consensus 133 l~~~LilPLl-~~~~~l~~q~~~L~~lL~~KD~eI~~y~~ 171 (235)
T 2qm4_A 133 VSQHLIRPLM-GMSLALQCQVRELATLLHMKDLEIQDYQE 171 (235)
T ss_dssp HHHHTHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443333 34568899999999999999999998653
No 322
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=29.11 E-value=2.1e+02 Score=22.59 Aligned_cols=73 Identities=11% Similarity=0.229 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 028818 47 DLESEHSALRSQLAEKDSRIAELQSQIESIY--SSLS-DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (203)
Q Consensus 47 ~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le--~~L~-~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (203)
.+...+..|-..|..|.+.|..|=+.+=.++ .+.| .|++...+++....+|+ ...|++-.+-+.+++..-+.+
T Consensus 54 ~f~~~~~ela~dli~kakqIe~LIdsLPg~~~seeeQ~~ri~~Le~E~~~~~~el---~~~v~eae~ll~~v~~~l~~i 129 (151)
T 1yke_B 54 EFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEK---IEAIKKKEKLLRHVDSLIEDF 129 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSSCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777777788887777644433332 2222 55555555555555443 344555555555555544443
No 323
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=28.95 E-value=1.7e+02 Score=21.52 Aligned_cols=40 Identities=13% Similarity=0.258 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 028818 89 ADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (203)
Q Consensus 89 ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~ 128 (203)
+-..-|.+..+.|...+++|.+++.++..--+++...|++
T Consensus 88 eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~ 127 (133)
T 1fxk_C 88 DAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEE 127 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566777788888888888888888887777776653
No 324
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=28.86 E-value=1.4e+02 Score=21.18 Aligned_cols=37 Identities=16% Similarity=0.279 Sum_probs=28.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (203)
Q Consensus 42 atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~ 78 (203)
..|+..++.|+..||.+.+.-.+.|.+.+.|+..|-.
T Consensus 9 ~~~Ld~i~~el~eLq~~~~~~~aki~e~krkl~eLsH 45 (65)
T 3t97_B 9 QTRLDIISEDISELQKNQTTTMAKIAQYKRKLMDLSH 45 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4567778888888888888888888888777665543
No 325
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=28.76 E-value=1.2e+02 Score=22.16 Aligned_cols=18 Identities=11% Similarity=0.494 Sum_probs=10.3
Q ss_pred HhhhhhHHHHHHHHHHHH
Q 028818 43 TRVSDLESEHSALRSQLA 60 (203)
Q Consensus 43 tRVs~LE~E~~~LR~~La 60 (203)
..|..+|..|..++....
T Consensus 8 nsVk~~eT~iaa~~~ev~ 25 (74)
T 1avy_A 8 NKIKAIETDIASVRQEVN 25 (74)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred chhcccccchhhhheeec
Confidence 345566666666665543
No 326
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=28.58 E-value=2.6e+02 Score=23.38 Aligned_cols=22 Identities=23% Similarity=0.534 Sum_probs=12.5
Q ss_pred ChHHHHh----hCCCCchhhHHHHHHH
Q 028818 14 LPEEVLQ----VLPSDPFEQLDVARKI 36 (203)
Q Consensus 14 lp~eil~----vLP~DP~EQLdlarkI 36 (203)
|....+. .||+ -.||-.++.+|
T Consensus 360 i~~~~l~~~~i~lPp-l~EQ~~Iv~~l 385 (464)
T 2y7c_A 360 ISGKDIKSQVVLLPP-VKEQAEIVRRV 385 (464)
T ss_dssp CCHHHHHHCEEEECC-HHHHHHHHHHH
T ss_pred ecHHHHhcCcCCCCC-HHHHHHHHHHH
Confidence 5555554 4564 55777666543
No 327
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=28.43 E-value=3.7e+02 Score=25.10 Aligned_cols=41 Identities=5% Similarity=0.092 Sum_probs=25.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
+...+..||..+..|-++-.+--..|..|+..+...+.++.
T Consensus 98 V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~ 138 (464)
T 1m1j_B 98 VKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRK 138 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccccccc
Confidence 55556666666666655555555556666666666666655
No 328
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=28.41 E-value=1.2e+02 Score=27.24 Aligned_cols=30 Identities=23% Similarity=0.470 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 028818 100 ALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (203)
Q Consensus 100 ~La~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (203)
.|...++.|..++..||.--+.+-..|++-
T Consensus 72 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T 2dq3_A 72 EIQNRVKELKEEIDRLEEELRKVEEELKNT 101 (425)
T ss_dssp TSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555554444443
No 329
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=28.37 E-value=1.4e+02 Score=25.48 Aligned_cols=52 Identities=19% Similarity=0.344 Sum_probs=0.0
Q ss_pred HHHHHHHH-----HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 028818 32 VARKITSI-----AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS--DK 83 (203)
Q Consensus 32 larkIts~-----A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~--~r 83 (203)
||.|+..+ .+-.++++...|...++.+|++=.+..+++++.+..+--+.| +|
T Consensus 169 La~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (228)
T 3q0x_A 169 LAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHLLEVQAQAK 227 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecccC
No 330
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=28.35 E-value=1.6e+02 Score=20.86 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 48 LESEHSALRSQLAEKDSRIAELQSQ 72 (203)
Q Consensus 48 LE~E~~~LR~~LaEKd~~i~~Lq~r 72 (203)
|+.|...++..+.+.+..+..++..
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e 27 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRAR 27 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333
No 331
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=27.82 E-value=59 Score=21.39 Aligned_cols=16 Identities=13% Similarity=0.347 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 028818 65 RIAELQSQIESIYSSL 80 (203)
Q Consensus 65 ~i~~Lq~r~s~Le~~L 80 (203)
.|.+|++++..|+..|
T Consensus 50 ~~~~Le~ri~~Le~~l 65 (72)
T 2er8_A 50 RNEAIEKRFKELTRTL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444445555555444
No 332
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=27.56 E-value=1.5e+02 Score=24.08 Aligned_cols=63 Identities=16% Similarity=0.155 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRK 107 (203)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKk 107 (203)
..+.-.+...||+++..|...+..|-..=+-=+.++.+...+..+-..+|..++-...+.++|
T Consensus 80 ~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~em~K 142 (175)
T 3lay_A 80 YDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAMAQ 142 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 333
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=27.53 E-value=61 Score=24.14 Aligned_cols=20 Identities=35% Similarity=0.416 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 028818 90 DKERLSKENEALTNTVRKLQ 109 (203)
Q Consensus 90 e~~kL~~E~~~La~TvKkL~ 109 (203)
+...|.+|...|...++.|.
T Consensus 15 ~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 15 KVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33333344444444444444
No 334
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=27.22 E-value=2.1e+02 Score=21.89 Aligned_cols=28 Identities=21% Similarity=0.421 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 53 SALRSQLAEKDSRIAELQSQIESIYSSL 80 (203)
Q Consensus 53 ~~LR~~LaEKd~~i~~Lq~r~s~Le~~L 80 (203)
..|...|++..+.|.+|..++..|...+
T Consensus 7 ~al~~eL~~~~~ei~~L~~ei~eLk~~v 34 (106)
T 4e61_A 7 VAIQAELTKSQETIGSLNEEIEQYKGTV 34 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554444444333
No 335
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=27.21 E-value=38 Score=24.83 Aligned_cols=19 Identities=32% Similarity=0.646 Sum_probs=9.7
Q ss_pred HHHhhhhhHHHHHHHHHHH
Q 028818 41 ISTRVSDLESEHSALRSQL 59 (203)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L 59 (203)
+..|+..||.++..|..+|
T Consensus 2 ~~~~l~~l~~~~~~l~~~l 20 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKL 20 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555444443
No 336
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=26.97 E-value=2.6e+02 Score=22.88 Aligned_cols=24 Identities=8% Similarity=0.073 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 58 QLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 58 ~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
++.--+.++.+|++|+..++..|+
T Consensus 70 n~~sA~~~~d~lekKl~~aq~kL~ 93 (158)
T 3tul_A 70 KTDTAKSVYDAATKKLTQAQNKLQ 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHHHHHHHHh
Confidence 334557788888888888888876
No 337
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=26.95 E-value=1.2e+02 Score=25.25 Aligned_cols=41 Identities=17% Similarity=0.375 Sum_probs=25.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L 80 (203)
-|-.|+..||.|-=.|-.++...+-.|.+|..||+.|..-+
T Consensus 69 ELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DLrGKF 109 (180)
T 1j1e_C 69 QLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRGKF 109 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHHHhcc
Confidence 34556666666666666666666666777776766665444
No 338
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=26.92 E-value=1.1e+02 Score=22.31 Aligned_cols=30 Identities=27% Similarity=0.386 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 48 LESEHSALRSQLAEKDSRIAELQSQIESIY 77 (203)
Q Consensus 48 LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le 77 (203)
|-..+-.++..|..|+.+|.+||+=+..|=
T Consensus 19 Li~l~lk~~~~l~~k~~~v~eLEdYID~LL 48 (75)
T 3tso_C 19 VLQELVKHKELLRRKDTHIRELEDYIDNLL 48 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777788999999999987666543
No 339
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=26.67 E-value=48 Score=24.59 Aligned_cols=20 Identities=15% Similarity=0.436 Sum_probs=0.0
Q ss_pred HHHHHhhhhhHHHHHHHHHH
Q 028818 39 IAISTRVSDLESEHSALRSQ 58 (203)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~ 58 (203)
||+|.||..|-.++..++.+
T Consensus 61 iaLAa~l~~lH~~V~~~Ke~ 80 (93)
T 3t98_B 61 VALAAQLQSIHENVKVLKEQ 80 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 340
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=26.65 E-value=82 Score=24.80 Aligned_cols=13 Identities=31% Similarity=0.217 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 028818 68 ELQSQIESIYSSL 80 (203)
Q Consensus 68 ~Lq~r~s~Le~~L 80 (203)
.|+.|+..++..+
T Consensus 4 ~l~~~~~~~~~~~ 16 (192)
T 2gkw_A 4 LLESQLSRHDQML 16 (192)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 341
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=26.43 E-value=93 Score=26.15 Aligned_cols=22 Identities=45% Similarity=0.620 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028818 82 DKLGQAQADKERLSKENEALTN 103 (203)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~ 103 (203)
++......+|..|++||+.|..
T Consensus 161 ~~i~~L~a~N~hLqkENeRL~~ 182 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKENERLLR 182 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777888888888888864
No 342
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=26.36 E-value=1.3e+02 Score=19.26 Aligned_cols=12 Identities=42% Similarity=0.626 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 028818 86 QAQADKERLSKE 97 (203)
Q Consensus 86 ~a~ee~~kL~~E 97 (203)
.++++|+||.++
T Consensus 4 ~~L~ENekLhk~ 15 (37)
T 1t6f_A 4 EALKENEKLHKE 15 (37)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344455554444
No 343
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=25.98 E-value=2.3e+02 Score=21.82 Aligned_cols=41 Identities=24% Similarity=0.417 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 028818 83 KLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLV 123 (203)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~Lm 123 (203)
++..+.+++..|+......-..|..|...|.+|.+=-..|.
T Consensus 45 ~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 45 SLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHH
Confidence 33466666777776666666677777777766655444443
No 344
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=25.93 E-value=1e+02 Score=25.85 Aligned_cols=20 Identities=10% Similarity=0.049 Sum_probs=9.6
Q ss_pred HHHHhhhHHHHHHHHHHHHh
Q 028818 105 VRKLQRDVSKLEVFRKTLVQ 124 (203)
Q Consensus 105 vKkL~rDvaKLE~FKk~Lmq 124 (203)
+|-|.+++-+...-+..|..
T Consensus 56 arilAkelVR~Rk~~~rl~~ 75 (218)
T 3frt_A 56 CIVLAKEMIRSRKAVSKLYA 75 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555444444433
No 345
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=25.68 E-value=2e+02 Score=21.20 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 57 SQLAEKDSRIAELQSQIESIYSSL 80 (203)
Q Consensus 57 ~~LaEKd~~i~~Lq~r~s~Le~~L 80 (203)
..|.+-=..+..|.+++..++.++
T Consensus 39 ~AL~eaL~EN~~Lh~~ie~l~eEi 62 (83)
T 1uii_A 39 KALYEALKENEKLHKEIEQKDNEI 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455566666655544444
No 346
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=25.58 E-value=1.2e+02 Score=27.75 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=15.4
Q ss_pred HHHHHHHHHhhhHHHHHH-HHHHHH
Q 028818 100 ALTNTVRKLQRDVSKLEV-FRKTLV 123 (203)
Q Consensus 100 ~La~TvKkL~rDvaKLE~-FKk~Lm 123 (203)
.+..-++.|...+.+||. ++.-|+
T Consensus 91 ~a~~e~~~l~~~l~~le~~l~~lLl 115 (371)
T 1zbt_A 91 MAKEELKNSKVAKEEYEEKLRFLLL 115 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345567788888888875 554443
No 347
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=25.57 E-value=2e+02 Score=21.02 Aligned_cols=75 Identities=20% Similarity=0.206 Sum_probs=38.8
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028818 42 STRVSDLESEHSALRSQLAEKDSRIAEL---Q---SQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (203)
Q Consensus 42 atRVs~LE~E~~~LR~~LaEKd~~i~~L---q---~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (203)
+.-....|.+...+...+..|-..|..+ + ..+..++..| .+|.+=..++.-|..++-.+.|. .=.+||
T Consensus 14 SelFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~l----dEA~eLl~qMelE~r~~p~s~R~--~~~~kl 87 (102)
T 2qyw_A 14 SEHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQ----QEANETLAEMEEELRYAPLTFRN--PMMSKL 87 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTSCHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCHHHHH--HHHHHH
Confidence 4555566666666666555555554322 1 2222333333 36666666666666666555543 334566
Q ss_pred HHHHHHH
Q 028818 116 EVFRKTL 122 (203)
Q Consensus 116 E~FKk~L 122 (203)
..+|+.|
T Consensus 88 r~Yk~dL 94 (102)
T 2qyw_A 88 RNYRKDL 94 (102)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666655
No 348
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=25.44 E-value=1.9e+02 Score=20.70 Aligned_cols=40 Identities=25% Similarity=0.424 Sum_probs=19.2
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 42 atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
..|+..+|.+-..|..++..=...+.+=+.+-..+..+|.
T Consensus 6 ~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk 45 (72)
T 3cve_A 6 HMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLK 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555444444444444444444443
No 349
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=25.40 E-value=2.4e+02 Score=21.94 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHH
Q 028818 66 IAELQSQIESIYSSLS---DKLGQAQAD 90 (203)
Q Consensus 66 i~~Lq~r~s~Le~~L~---~rL~~a~ee 90 (203)
|.+||+-+...|.+|. -||+.|.+.
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~~ 51 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEKQ 51 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777776 455555543
No 350
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=25.29 E-value=73 Score=25.93 Aligned_cols=7 Identities=14% Similarity=0.667 Sum_probs=3.2
Q ss_pred HHHHHHH
Q 028818 114 KLEVFRK 120 (203)
Q Consensus 114 KLE~FKk 120 (203)
++++|-+
T Consensus 81 kI~nfS~ 87 (228)
T 1flk_A 81 KIRDYKR 87 (228)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 3445544
No 351
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=25.26 E-value=4.2e+02 Score=24.69 Aligned_cols=32 Identities=13% Similarity=0.114 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhccccc
Q 028818 99 EALTNTVRKLQRDVSKLEVFRKTLVQSLKDDE 130 (203)
Q Consensus 99 ~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d~ 130 (203)
..|...++.|..++..||.--+.+-..|++--
T Consensus 74 ~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l 105 (485)
T 3qne_A 74 KDLIAEKEKLSNEKKEIIEKEAEADKNLRSKI 105 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777776666666665543
No 352
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=25.15 E-value=1.4e+02 Score=19.25 Aligned_cols=22 Identities=9% Similarity=0.160 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 028818 88 QADKERLSKENEALTNTVRKLQ 109 (203)
Q Consensus 88 ~ee~~kL~~E~~~La~TvKkL~ 109 (203)
.....++.++-......|.+++
T Consensus 32 k~~~~~~~~~l~~~~~~I~~~k 53 (60)
T 3htk_A 32 KEKINEIFEKLNTIRDEVIKKK 53 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444433
No 353
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=24.52 E-value=1.5e+02 Score=25.05 Aligned_cols=29 Identities=10% Similarity=0.280 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 028818 84 LGQAQADKERLSKENEALTNTVRKLQRDV 112 (203)
Q Consensus 84 L~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (203)
.....++...|++|+..+.+.+.+|.+++
T Consensus 150 ~e~~~~~i~ql~~En~~le~~Ie~Lk~e~ 178 (250)
T 2ve7_C 150 YKSSADKMQQLNAAHQEALMKLERLEKEV 178 (250)
T ss_dssp TTHHHHHHHHHHHHHHHHHHSCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555544444444443
No 354
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=24.28 E-value=1.7e+02 Score=19.84 Aligned_cols=15 Identities=20% Similarity=0.350 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 028818 64 SRIAELQSQIESIYS 78 (203)
Q Consensus 64 ~~i~~Lq~r~s~Le~ 78 (203)
..+.+|+.++..+|.
T Consensus 6 ~~~~~le~kl~~lEn 20 (65)
T 3m0d_C 6 KLLAELEGKLRVFEN 20 (65)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444333
No 355
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=24.13 E-value=2.5e+02 Score=21.69 Aligned_cols=79 Identities=11% Similarity=0.277 Sum_probs=38.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-------HHh
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVR-------KLQ 109 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~---~rL~~a~ee~~kL~~E~~~La~TvK-------kL~ 109 (203)
|+..|..+...-++.+-..++--.+.|..=-.++....++|| +||..-...+..=-+|-..+++++- -|.
T Consensus 17 ~~~~~~~ri~~aig~~d~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~e 96 (114)
T 2xzr_A 17 HIENEIARIKKLIGAIDGRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIE 96 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHhhhhHHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 555555555555555555555555555544455555566665 4444333333333333333333333 344
Q ss_pred hhHHHHHHH
Q 028818 110 RDVSKLEVF 118 (203)
Q Consensus 110 rDvaKLE~F 118 (203)
.+|++|+.+
T Consensus 97 ne~ar~kkl 105 (114)
T 2xzr_A 97 NEIARIKKL 105 (114)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455555443
No 356
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=24.11 E-value=1.1e+02 Score=18.35 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHH
Q 028818 93 RLSKENEALTNTVRKLQRDVSKLE 116 (203)
Q Consensus 93 kL~~E~~~La~TvKkL~rDvaKLE 116 (203)
.|.=||+.|.+.+-.|...++.|+
T Consensus 4 alefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHHHhc
Confidence 456678888888777777666553
No 357
>4adz_A CSOR; transcription, copper sensor; 1.70A {Streptomyces lividans}
Probab=24.11 E-value=2.7e+02 Score=22.13 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=32.1
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
...+..|+.+.|.+++.+..-+.| ++--.++=.|++....+|.
T Consensus 51 Kk~ll~RLkRIeGQvrGI~rMIEe-dr~C~DIL~QlaAVrsAL~ 93 (136)
T 4adz_A 51 KAEHLKRLRRIEGQIRGLQRMVDE-DVYCIDILTQVSASTKALQ 93 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHH
Confidence 347889999999999999888864 4444555557777777766
No 358
>3a1q_C Ubiquitin interaction motif-containing protein 1; protein complex, cytoplasm, nucleus, phosphoprotein, UBL conjugation, transcription regulation; 2.20A {Mus musculus}
Probab=24.11 E-value=1.6e+02 Score=19.47 Aligned_cols=8 Identities=38% Similarity=0.256 Sum_probs=4.9
Q ss_pred hhhHHHHH
Q 028818 27 FEQLDVAR 34 (203)
Q Consensus 27 ~EQLdlar 34 (203)
.|||.||-
T Consensus 7 EEq~ALA~ 14 (45)
T 3a1q_C 7 EEQFALAL 14 (45)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 46776665
No 359
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=23.85 E-value=3e+02 Score=22.49 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028818 72 QIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (203)
Q Consensus 72 r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (203)
+-..++.+|..+=........+|..+...|......|.+.+..|+.
T Consensus 39 ~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 39 RQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp GGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444333344556778889999999999999999988888
No 360
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=23.74 E-value=2.5e+02 Score=21.54 Aligned_cols=67 Identities=12% Similarity=0.224 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028818 47 DLESEHSALRSQLAEKDSRIAELQSQIESIY--SSLS-DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (203)
Q Consensus 47 ~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le--~~L~-~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (203)
.+...+..|-..|..|.+.|..|=+.+=.++ .+.| .|++...+++....+|+.. .|++-.+-+.+++
T Consensus 54 ~f~~~~~ela~dli~k~kqIe~LIdsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~---~v~e~e~ll~~v~ 123 (132)
T 1ykh_B 54 EFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIE---AIKKKEKLMRHVD 123 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 4555667777777788887777754443332 2222 5666666666655555443 3344333344443
No 361
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=23.72 E-value=1.8e+02 Score=19.89 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=28.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
.+...|+..-+....-+.++.|+.+.+..|++|-+.|...=+
T Consensus 8 ~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~ 49 (63)
T 1urq_A 8 GVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSAD 49 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666777778888888888888877766655443
No 362
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1
Probab=23.70 E-value=5e+02 Score=25.01 Aligned_cols=38 Identities=11% Similarity=0.167 Sum_probs=32.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 44 RVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
|-..+|..+..||....+=++.|..|++.-..++-.++
T Consensus 3 ~~~~i~~~~~~l~~~~q~~e~~~k~Le~~Qe~f~~~y~ 40 (575)
T 1bf5_A 3 KQKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCK 40 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 55678899999999999999999888888777777765
No 363
>3g0m_A Cysteine desulfuration protein SUFE; YNHA, csgid, national I of allergy and infectious diseases, niaid, hydrolase, struc genomics; 1.76A {Salmonella typhimurium LT2} SCOP: d.224.1.1 PDB: 1mzg_A
Probab=23.60 E-value=18 Score=28.52 Aligned_cols=45 Identities=20% Similarity=0.296 Sum_probs=35.3
Q ss_pred CCCChHHHHhhCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 028818 11 TFDLPEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQL 59 (203)
Q Consensus 11 ~f~lp~eil~vLP~DP~EQLdlarkIts~A~atRVs~LE~E~~~LR~~L 59 (203)
+..=|+||+++=|.+=|++|.|..-++ .+|.+.|.+=+.++|...
T Consensus 93 ~G~tp~eIl~~d~~~f~~~lGL~~~LS----psR~nGl~am~~~ik~~a 137 (141)
T 3g0m_A 93 HQMTAQDIVHFDVRPWFEKMALAQHLT----PSRSQGLEAMIRAIRAKA 137 (141)
T ss_dssp TTCBHHHHHHCCCHHHHHHHTCGGGSC----HHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHhCCHHHHHHHcCchhhcC----chHHHHHHHHHHHHHHHH
Confidence 345699999987777889999987654 578888888888887754
No 364
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=23.45 E-value=74 Score=26.17 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028818 52 HSALRSQLAEKDSRIAELQSQI 73 (203)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~ 73 (203)
+..|..++..|..++.+||-++
T Consensus 150 v~~L~~~ie~kn~~l~ele~k~ 171 (172)
T 4e8u_A 150 VQNLRQLVEEKKKDMKEIEELC 171 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 5556677777777777777554
No 365
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=23.19 E-value=3.1e+02 Score=22.51 Aligned_cols=27 Identities=0% Similarity=0.207 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 028818 86 QAQADKERLSKENEALTNTVRKLQRDV 112 (203)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (203)
.+.+....+.+.-..+...+..+...+
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (213)
T 3g67_A 50 KSGTNVDQIVERVKEASSQIGETLENI 76 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334443333444444433333
No 366
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=23.11 E-value=61 Score=22.88 Aligned_cols=28 Identities=14% Similarity=0.058 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 50 SEHSALRSQLAEKDSRIAELQSQIESIY 77 (203)
Q Consensus 50 ~E~~~LR~~LaEKd~~i~~Lq~r~s~Le 77 (203)
++...|+.+=.+=|..|..++.+...-+
T Consensus 17 ~~f~~L~~eH~~LD~~I~~le~~~~~~~ 44 (76)
T 1zhc_A 17 PHFDKIFEKHNQLDDDIKTAEQQNASDA 44 (76)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCChH
Confidence 3345555555555555555554444333
No 367
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=22.89 E-value=2.6e+02 Score=21.36 Aligned_cols=65 Identities=17% Similarity=0.236 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028818 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (203)
Q Consensus 48 LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (203)
|+.+.-+-.+-|.+++.....-..-|..|-.+|- +-+. + ..+-++.-..|..-|++||..|....
T Consensus 23 Lq~qLT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~-keka--q-~q~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 23 LQRQLTRTQDSLLQAETQANSCNLTVVTLQESLE-KKVS--Q-ALEQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--h-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555666666666666655665555554 1101 0 11122344556666777777665554
No 368
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=22.49 E-value=2.3e+02 Score=20.63 Aligned_cols=43 Identities=19% Similarity=0.169 Sum_probs=30.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 37 TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSS 79 (203)
Q Consensus 37 ts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~ 79 (203)
+-.++..-...=|.||++|+..++=|..-.+-|.+.+-++.-+
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIE 61 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIE 61 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHH
Confidence 3345556666668899999999888877777777777665443
No 369
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=22.44 E-value=2.6e+02 Score=21.19 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHH
Q 028818 66 IAELQSQIESIYSSLS---DKLGQAQAD 90 (203)
Q Consensus 66 i~~Lq~r~s~Le~~L~---~rL~~a~ee 90 (203)
|.+||+-+...|.+|. -||+.|...
T Consensus 7 i~eLq~e~~~~E~QL~~A~QKLkdA~~~ 34 (96)
T 2ic9_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERA 34 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777776 455555543
No 370
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=22.21 E-value=3.5e+02 Score=22.69 Aligned_cols=47 Identities=15% Similarity=0.047 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 028818 67 AELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (203)
Q Consensus 67 ~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (203)
..+++|+..|....+.-+..+..+...|.. +..+....+|++.+++.
T Consensus 83 ~~I~~r~~~L~~~W~~L~~l~~~R~~~L~~-----a~~~~qF~~da~e~e~W 129 (283)
T 3pe0_A 83 PTVESFQAALQTQWSWMLQLCCCIEAHLKE-----NAAYFQFFSDVREAEGQ 129 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 345556665555554222222222233322 12345678888888884
No 371
>1fzc_B Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_B* 1fza_B* 1fze_B* 1fzf_B* 1fzg_B* 1n86_B* 1n8e_B 2h43_B* 2hlo_B* 2hod_B* 2hpc_B* 2q9i_B* 2xnx_B 2xny_B 3e1i_B* 2z4e_B* 2oyh_B* 1ltj_B* 1rf0_B* 1lt9_B* ...
Probab=22.08 E-value=46 Score=29.56 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=11.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhh
Q 028818 101 LTNTVRKLQRDVSKLEVFRKTLVQS 125 (203)
Q Consensus 101 La~TvKkL~rDvaKLE~FKk~LmqS 125 (203)
|...+..|...|.+||.--.+++..
T Consensus 35 Lq~~le~l~~KIq~Le~~v~~~~~~ 59 (328)
T 1fzc_B 35 LRSILENLRSKIQKLESDVSAQMEY 59 (328)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333444455555555444444433
No 372
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=21.95 E-value=2.6e+02 Score=21.14 Aligned_cols=13 Identities=15% Similarity=-0.026 Sum_probs=7.1
Q ss_pred hhhHHHHHHHHHH
Q 028818 27 FEQLDVARKITSI 39 (203)
Q Consensus 27 ~EQLdlarkIts~ 39 (203)
.++++..+.|...
T Consensus 43 ~~dl~~l~~I~~l 55 (142)
T 3gp4_A 43 AEDLRWILFTRQM 55 (142)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4566665555443
No 373
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=21.62 E-value=2.8e+02 Score=21.31 Aligned_cols=72 Identities=13% Similarity=0.131 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHH
Q 028818 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL-QRDVSKLEVFRKTL 122 (203)
Q Consensus 47 ~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~~rL~~a~ee~~kL~~E~~~La~TvKkL-~rDvaKLE~FKk~L 122 (203)
.|=.|...|+....+-...+..+......|+..+. .....+..|.++...+......| ...+..++...+.|
T Consensus 26 ~l~~eN~~Lk~e~e~l~~~~~~~~~~~~eL~~~~~----~Le~~n~~L~~~lke~~~~~~~l~ek~~~e~~~le~~L 98 (155)
T 2oto_A 26 RLRHENKDLKARLENAMEVAGRDFKRAEELEKAKQ----ALEDQRKDLETKLKELQQDYDLAKESTSWDRQRLEKEL 98 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 374
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=20.84 E-value=3e+02 Score=21.34 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=14.9
Q ss_pred HHHHHhhhhhHHHHHHHHHH
Q 028818 39 IAISTRVSDLESEHSALRSQ 58 (203)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~ 58 (203)
..|-++...||.|...|...
T Consensus 5 ~~i~~~l~~Leae~q~L~~~ 24 (119)
T 3etw_A 5 ASLVGELQALDAEYQNLANQ 24 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 35677888888888877654
No 375
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=20.81 E-value=2.9e+02 Score=21.39 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=16.6
Q ss_pred HHHhhhhhHHHHHHHHHHHH
Q 028818 41 ISTRVSDLESEHSALRSQLA 60 (203)
Q Consensus 41 ~atRVs~LE~E~~~LR~~La 60 (203)
++.++.+|+-|-..||.++.
T Consensus 13 LaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 13 MVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp HHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 46788999999999999986
No 376
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=20.59 E-value=55 Score=24.12 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 028818 89 ADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLV 123 (203)
Q Consensus 89 ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~Lm 123 (203)
+.+++|.+.+..|.+.|..|+.+|+--|+.-|-.+
T Consensus 5 ~~k~~Le~~~~e~k~kv~~LQ~eLdtsE~VQrDFV 39 (79)
T 1tu3_F 5 SAKATVEQLMFEEKNKAQRLQTELDVSEQVQRDFV 39 (79)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666665555433
No 377
>4g63_A Cytosolic IMP-GMP specific 5'-nucleotidase; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.70A {Legionella pneumophila subsp} PDB: 2bde_A
Probab=20.57 E-value=80 Score=29.45 Aligned_cols=10 Identities=20% Similarity=0.278 Sum_probs=5.9
Q ss_pred hhhHHHHHHH
Q 028818 46 SDLESEHSAL 55 (203)
Q Consensus 46 s~LE~E~~~L 55 (203)
-+||.|+..+
T Consensus 325 ~EL~~Ei~~~ 334 (470)
T 4g63_A 325 EELGEEIASQ 334 (470)
T ss_dssp TTHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3577776543
No 378
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=20.56 E-value=1.7e+02 Score=22.02 Aligned_cols=46 Identities=11% Similarity=0.238 Sum_probs=30.7
Q ss_pred HHHHHHHHhhhhhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 36 ITSIAISTRVSDLE--------SEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (203)
Q Consensus 36 Its~A~atRVs~LE--------~E~~~LR~~LaEKd~~i~~Lq~r~s~Le~~L~ 81 (203)
+-..-||+|+.... .....++.++.+-...+..|++++..||.+|.
T Consensus 60 l~TL~fa~rak~i~n~~~~n~~~~~~~l~~~~~~e~~~~~~L~~~i~~Le~el~ 113 (117)
T 3kin_B 60 KSTLMFGQRAKTIKNTVSVNLELTAEEWKKKYEKEKEKNKALKSVIQHLEVELN 113 (117)
T ss_dssp HHHHHHHHHHTTCEEEECCCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccCCceecCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666665443 23566777777777777888888888887774
No 379
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene}
Probab=20.53 E-value=3.5e+02 Score=23.43 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 49 ESEHSALRSQLAEKDSRIAELQSQIE 74 (203)
Q Consensus 49 E~E~~~LR~~LaEKd~~i~~Lq~r~s 74 (203)
|+-+..|+.+|.+|+.+..+.+..+.
T Consensus 110 eA~laal~erLkek~~~aeeVRr~~~ 135 (240)
T 4f61_I 110 EAHFAAMLERLQEKDKHAEEVRQRAI 135 (240)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45588889999999999888877653
No 380
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=20.43 E-value=3.2e+02 Score=21.63 Aligned_cols=17 Identities=18% Similarity=0.051 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028818 65 RIAELQSQIESIYSSLS 81 (203)
Q Consensus 65 ~i~~Lq~r~s~Le~~L~ 81 (203)
.|+.|++.+..+-..+.
T Consensus 172 ~l~~lrr~l~~lrr~l~ 188 (252)
T 3ck6_A 172 NHIAAQKALISIKRFIR 188 (252)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555555554
No 381
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=20.02 E-value=2.3e+02 Score=23.38 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028818 83 KLGQAQADKERLSKENEALTNTVR 106 (203)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvK 106 (203)
+.....+++.+|++||+.|..--.
T Consensus 153 ~~~~L~~~n~~LqkeNeRL~~E~n 176 (184)
T 3w03_C 153 TIAENQAKNEHLQKENERLLRDWN 176 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555556666665554433
Done!