Query 028819
Match_columns 203
No_of_seqs 276 out of 1390
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 03:02:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028819.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028819hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0907 Thioredoxin [Posttrans 99.9 1.1E-23 2.3E-28 154.5 10.4 89 111-200 13-101 (106)
2 cd02954 DIM1 Dim1 family; Dim1 99.9 4.6E-23 1E-27 152.6 12.9 87 107-194 2-89 (114)
3 KOG0910 Thioredoxin-like prote 99.9 3.5E-23 7.5E-28 158.4 9.7 93 101-195 44-137 (150)
4 cd02985 TRX_CDSP32 TRX family, 99.9 1.3E-22 2.9E-27 147.8 11.7 93 105-198 1-96 (103)
5 PHA02278 thioredoxin-like prot 99.9 1.9E-21 4.2E-26 142.0 11.9 86 105-193 2-92 (103)
6 cd02948 TRX_NDPK TRX domain, T 99.9 3E-21 6.6E-26 140.3 11.5 96 103-202 3-100 (102)
7 cd02986 DLP Dim1 family, Dim1- 99.9 4.4E-21 9.5E-26 141.5 12.3 95 107-201 2-97 (114)
8 PLN00410 U5 snRNP protein, DIM 99.9 3.2E-21 7E-26 147.9 11.9 95 101-195 5-101 (142)
9 cd02989 Phd_like_TxnDC9 Phosdu 99.9 8.7E-21 1.9E-25 140.7 13.0 93 99-194 4-96 (113)
10 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 1.1E-20 2.4E-25 136.6 11.1 91 100-194 2-93 (101)
11 KOG0908 Thioredoxin-like prote 99.8 2.4E-21 5.3E-26 158.4 8.5 101 100-201 2-102 (288)
12 cd03006 PDI_a_EFP1_N PDIa fami 99.8 2.5E-20 5.3E-25 138.3 12.6 94 99-194 9-105 (113)
13 cd02957 Phd_like Phosducin (Ph 99.8 1.3E-20 2.9E-25 139.3 11.1 93 100-195 5-98 (113)
14 PTZ00051 thioredoxin; Provisio 99.8 3.7E-20 8E-25 132.7 12.6 95 101-198 2-96 (98)
15 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 3.2E-20 7E-25 134.6 12.1 92 101-194 3-95 (104)
16 cd02999 PDI_a_ERp44_like PDIa 99.8 3.3E-20 7.2E-25 134.6 10.8 85 108-194 7-92 (100)
17 cd02956 ybbN ybbN protein fami 99.8 6.3E-20 1.4E-24 131.1 11.2 84 109-193 2-86 (96)
18 cd02984 TRX_PICOT TRX domain, 99.8 2E-19 4.3E-24 128.5 11.4 93 106-199 1-94 (97)
19 cd02962 TMX2 TMX2 family; comp 99.8 3.6E-19 7.9E-24 138.5 13.2 94 99-194 28-129 (152)
20 PF00085 Thioredoxin: Thioredo 99.8 3.4E-19 7.4E-24 127.8 12.0 86 105-192 4-90 (103)
21 COG3118 Thioredoxin domain-con 99.8 1.3E-19 2.9E-24 152.2 10.0 95 100-195 24-119 (304)
22 cd02987 Phd_like_Phd Phosducin 99.8 3.8E-19 8.2E-24 141.5 12.2 97 98-196 61-158 (175)
23 cd02963 TRX_DnaJ TRX domain, D 99.8 8.1E-19 1.8E-23 129.5 10.5 87 106-193 10-99 (111)
24 cd03065 PDI_b_Calsequestrin_N 99.8 8E-19 1.7E-23 131.4 10.4 91 100-194 10-107 (120)
25 cd02965 HyaE HyaE family; HyaE 99.8 1.2E-18 2.6E-23 128.3 10.5 85 107-194 17-104 (111)
26 cd02996 PDI_a_ERp44 PDIa famil 99.8 2.2E-18 4.7E-23 126.1 11.6 91 101-194 3-100 (108)
27 PRK09381 trxA thioredoxin; Pro 99.8 4.9E-18 1.1E-22 124.2 12.5 91 100-193 4-95 (109)
28 cd03005 PDI_a_ERp46 PDIa famil 99.8 8.4E-18 1.8E-22 120.8 10.9 85 106-194 6-94 (102)
29 PRK10996 thioredoxin 2; Provis 99.8 1E-17 2.2E-22 128.5 12.0 87 105-194 40-127 (139)
30 cd03002 PDI_a_MPD1_like PDI fa 99.8 6.3E-18 1.4E-22 123.2 10.2 87 106-193 6-99 (109)
31 cd02994 PDI_a_TMX PDIa family, 99.8 1.3E-17 2.9E-22 120.2 11.7 87 101-194 3-91 (101)
32 cd03001 PDI_a_P5 PDIa family, 99.8 1.4E-17 3E-22 119.9 10.9 88 106-194 6-94 (103)
33 cd02997 PDI_a_PDIR PDIa family 99.7 3.1E-17 6.8E-22 118.1 11.3 89 102-194 3-96 (104)
34 cd02952 TRP14_like Human TRX-r 99.7 1.5E-17 3.3E-22 124.3 9.2 95 103-198 5-115 (119)
35 cd02988 Phd_like_VIAF Phosduci 99.7 5.2E-17 1.1E-21 131.0 11.7 92 98-194 81-173 (192)
36 cd02993 PDI_a_APS_reductase PD 99.7 6.3E-17 1.4E-21 118.8 10.8 86 107-192 8-98 (109)
37 cd02949 TRX_NTR TRX domain, no 99.7 1.1E-16 2.4E-21 115.0 11.7 82 111-194 6-88 (97)
38 TIGR01068 thioredoxin thioredo 99.7 1.1E-16 2.3E-21 114.2 11.5 86 107-194 3-89 (101)
39 cd02950 TxlA TRX-like protein 99.7 6.6E-17 1.4E-21 124.5 10.6 84 108-194 11-98 (142)
40 PTZ00443 Thioredoxin domain-co 99.7 1.2E-16 2.7E-21 131.5 11.9 90 100-191 31-124 (224)
41 cd02975 PfPDO_like_N Pyrococcu 99.7 1.3E-16 2.9E-21 118.1 10.5 82 110-194 15-98 (113)
42 cd02953 DsbDgamma DsbD gamma f 99.7 7E-17 1.5E-21 117.2 8.5 84 108-194 2-95 (104)
43 TIGR01126 pdi_dom protein disu 99.7 1.6E-16 3.5E-21 113.8 10.2 85 107-194 3-90 (102)
44 cd02995 PDI_a_PDI_a'_C PDIa fa 99.7 2E-16 4.3E-21 113.8 10.4 85 107-193 7-95 (104)
45 TIGR01295 PedC_BrcD bacterioci 99.7 1.6E-16 3.6E-21 119.3 10.1 93 105-201 11-121 (122)
46 cd02998 PDI_a_ERp38 PDIa famil 99.7 2.4E-16 5.3E-21 113.4 10.2 90 102-193 3-96 (105)
47 PTZ00062 glutaredoxin; Provisi 99.7 1.3E-16 2.9E-21 129.5 9.3 85 104-198 3-87 (204)
48 cd02961 PDI_a_family Protein D 99.7 3.2E-16 7E-21 110.9 10.2 86 106-193 4-92 (101)
49 cd03000 PDI_a_TMX3 PDIa family 99.7 2E-16 4.3E-21 115.0 9.2 81 108-193 7-91 (104)
50 cd02992 PDI_a_QSOX PDIa family 99.7 9.6E-16 2.1E-20 113.7 10.2 77 106-183 7-89 (114)
51 cd02947 TRX_family TRX family; 99.6 1.8E-15 3.8E-20 105.0 10.2 83 109-194 2-84 (93)
52 cd02951 SoxW SoxW family; SoxW 99.6 4.8E-15 1.1E-19 111.0 10.2 85 108-194 4-107 (125)
53 TIGR00424 APS_reduc 5'-adenyly 99.6 9.3E-15 2E-19 131.4 11.9 91 100-191 352-447 (463)
54 PLN02309 5'-adenylylsulfate re 99.6 1.4E-14 2.9E-19 130.3 12.0 91 100-191 346-441 (457)
55 KOG0190 Protein disulfide isom 99.6 4.3E-15 9.4E-20 133.4 8.0 91 100-194 26-120 (493)
56 TIGR01130 ER_PDI_fam protein d 99.5 3.3E-14 7.1E-19 127.1 11.4 87 106-194 7-97 (462)
57 PTZ00102 disulphide isomerase; 99.5 4.4E-14 9.5E-19 127.4 11.0 86 105-194 37-126 (477)
58 PHA02125 thioredoxin-like prot 99.5 4.5E-14 9.8E-19 97.0 8.4 65 123-196 2-66 (75)
59 PTZ00102 disulphide isomerase; 99.5 5.3E-14 1.2E-18 126.9 10.4 87 107-194 364-453 (477)
60 KOG4277 Uncharacterized conser 99.5 1.2E-14 2.6E-19 122.4 5.7 84 109-194 32-120 (468)
61 cd02959 ERp19 Endoplasmic reti 99.5 4.4E-14 9.6E-19 105.3 7.9 72 117-189 17-93 (117)
62 cd03007 PDI_a_ERp29_N PDIa fam 99.5 6.2E-14 1.4E-18 104.2 8.2 83 105-192 6-101 (116)
63 PRK00293 dipZ thiol:disulfide 99.5 3.4E-13 7.5E-18 124.9 11.1 93 100-193 453-557 (571)
64 cd02982 PDI_b'_family Protein 99.5 1.6E-13 3.5E-18 98.8 6.5 64 119-182 12-78 (103)
65 TIGR02187 GlrX_arch Glutaredox 99.4 6.9E-13 1.5E-17 108.6 10.8 75 119-194 19-99 (215)
66 TIGR00411 redox_disulf_1 small 99.4 1E-12 2.2E-17 90.7 8.9 66 122-192 2-68 (82)
67 TIGR02187 GlrX_arch Glutaredox 99.4 1.2E-12 2.7E-17 107.1 10.4 80 111-194 125-204 (215)
68 KOG0190 Protein disulfide isom 99.4 3.3E-13 7.1E-18 121.4 7.5 84 108-194 374-461 (493)
69 cd02973 TRX_GRX_like Thioredox 99.4 1.2E-12 2.5E-17 87.5 7.7 56 123-178 3-58 (67)
70 TIGR00412 redox_disulf_2 small 99.4 1.5E-12 3.3E-17 89.7 7.8 62 123-192 2-64 (76)
71 cd03010 TlpA_like_DsbE TlpA-li 99.4 2.8E-12 6.1E-17 95.9 9.6 75 118-194 24-122 (127)
72 cd03008 TryX_like_RdCVF Trypar 99.4 2.9E-12 6.4E-17 99.0 9.8 73 118-191 24-130 (146)
73 cd02955 SSP411 TRX domain, SSP 99.4 8.1E-12 1.8E-16 94.1 10.4 82 108-192 6-100 (124)
74 PF13905 Thioredoxin_8: Thiore 99.4 7.3E-12 1.6E-16 89.0 9.7 64 119-182 1-92 (95)
75 cd03009 TryX_like_TryX_NRX Try 99.3 6.2E-12 1.3E-16 94.6 9.1 66 118-183 17-111 (131)
76 TIGR02740 TraF-like TraF-like 99.3 1.4E-11 2.9E-16 104.5 11.8 75 116-192 163-250 (271)
77 cd02964 TryX_like_family Trypa 99.3 7.5E-12 1.6E-16 94.6 9.1 73 118-191 16-117 (132)
78 TIGR01130 ER_PDI_fam protein d 99.3 3.9E-12 8.4E-17 113.7 8.7 83 107-192 353-440 (462)
79 KOG0912 Thiol-disulfide isomer 99.3 3.1E-12 6.7E-17 107.9 7.0 83 110-194 6-94 (375)
80 PF13098 Thioredoxin_2: Thiore 99.3 5.2E-12 1.1E-16 92.3 6.9 77 117-194 3-104 (112)
81 cd03026 AhpF_NTD_C TRX-GRX-lik 99.3 2.2E-11 4.9E-16 86.5 9.8 70 118-192 11-80 (89)
82 cd02966 TlpA_like_family TlpA- 99.3 2.5E-11 5.3E-16 87.2 9.5 73 118-191 18-116 (116)
83 PRK14018 trifunctional thiored 99.3 1.6E-11 3.5E-16 112.0 10.2 77 117-194 54-161 (521)
84 PRK15412 thiol:disulfide inter 99.3 2.9E-11 6.3E-16 96.8 10.4 74 118-194 67-164 (185)
85 TIGR02738 TrbB type-F conjugat 99.3 2.8E-11 6.1E-16 94.3 10.0 75 118-193 49-140 (153)
86 KOG0191 Thioredoxin/protein di 99.3 8.6E-12 1.9E-16 110.4 7.9 76 117-193 45-121 (383)
87 TIGR00385 dsbE periplasmic pro 99.2 7.8E-11 1.7E-15 93.2 9.1 74 117-193 61-158 (173)
88 cd03012 TlpA_like_DipZ_like Tl 99.2 2E-10 4.3E-15 86.1 10.1 73 118-191 22-124 (126)
89 cd03011 TlpA_like_ScsD_MtbDsbE 99.2 1.2E-10 2.6E-15 86.4 8.5 75 118-194 19-114 (123)
90 PLN02919 haloacid dehalogenase 99.2 1.4E-10 2.9E-15 114.3 9.9 75 118-193 419-523 (1057)
91 PRK03147 thiol-disulfide oxido 99.1 3.6E-10 7.8E-15 88.6 10.2 76 118-194 60-160 (173)
92 cd02967 mauD Methylamine utili 99.1 1.3E-10 2.9E-15 84.9 6.2 63 118-180 20-103 (114)
93 KOG1672 ATP binding protein [P 99.1 3.7E-10 8.1E-15 89.8 8.9 97 93-192 60-156 (211)
94 COG4232 Thiol:disulfide interc 99.1 2.5E-10 5.4E-15 104.1 7.8 89 102-191 457-553 (569)
95 PF02114 Phosducin: Phosducin; 99.1 7.1E-10 1.5E-14 93.6 9.0 95 99-195 125-220 (265)
96 PF08534 Redoxin: Redoxin; In 99.0 1.6E-09 3.4E-14 82.8 9.4 78 117-195 26-137 (146)
97 COG0526 TrxA Thiol-disulfide i 99.0 7.1E-10 1.5E-14 78.6 7.0 72 119-191 32-107 (127)
98 PF13899 Thioredoxin_7: Thiore 99.0 6.1E-10 1.3E-14 77.5 6.4 63 117-180 15-81 (82)
99 KOG1731 FAD-dependent sulfhydr 99.0 7.6E-11 1.6E-15 106.7 1.9 78 104-182 43-126 (606)
100 cd02960 AGR Anterior Gradient 99.0 1.8E-09 3.8E-14 81.8 7.7 74 117-193 21-100 (130)
101 KOG0191 Thioredoxin/protein di 99.0 1.8E-09 3.9E-14 95.6 7.9 88 101-191 146-237 (383)
102 PRK13728 conjugal transfer pro 99.0 6.9E-09 1.5E-13 82.8 10.2 70 123-194 73-159 (181)
103 cd02958 UAS UAS family; UAS is 98.9 1.1E-08 2.4E-13 75.4 10.3 77 117-194 15-99 (114)
104 KOG0914 Thioredoxin-like prote 98.9 1.9E-09 4.1E-14 87.3 6.0 94 100-194 125-226 (265)
105 PRK11509 hydrogenase-1 operon 98.9 1.3E-08 2.9E-13 77.2 10.1 84 108-194 25-112 (132)
106 TIGR02661 MauD methylamine deh 98.9 9E-09 2E-13 82.7 9.1 62 118-180 73-154 (189)
107 cd01659 TRX_superfamily Thiore 98.9 1.6E-08 3.4E-13 64.0 7.8 60 123-182 1-63 (69)
108 KOG3414 Component of the U4/U6 98.8 6.3E-08 1.4E-12 72.1 10.3 99 103-201 7-106 (142)
109 PF14595 Thioredoxin_9: Thiore 98.8 2.5E-08 5.5E-13 75.6 8.2 90 108-197 30-122 (129)
110 TIGR01626 ytfJ_HI0045 conserve 98.8 1.8E-08 4E-13 80.7 7.8 72 118-192 58-166 (184)
111 PTZ00056 glutathione peroxidas 98.8 2.7E-08 5.9E-13 80.7 8.3 42 118-159 38-81 (199)
112 cd02969 PRX_like1 Peroxiredoxi 98.8 6E-08 1.3E-12 76.3 9.7 69 118-187 24-123 (171)
113 TIGR02196 GlrX_YruB Glutaredox 98.7 4E-08 8.6E-13 65.5 6.7 64 123-197 2-69 (74)
114 PF06110 DUF953: Eukaryotic pr 98.7 2.5E-08 5.3E-13 74.5 6.1 94 104-198 2-114 (119)
115 TIGR02200 GlrX_actino Glutared 98.7 9.5E-08 2.1E-12 64.7 6.7 55 123-183 2-61 (77)
116 PLN02399 phospholipid hydroper 98.6 1.7E-07 3.7E-12 77.9 9.2 42 118-159 98-141 (236)
117 smart00594 UAS UAS domain. 98.6 4.4E-07 9.6E-12 67.8 10.4 64 117-180 25-94 (122)
118 KOG0911 Glutaredoxin-related p 98.6 1.8E-08 3.9E-13 82.0 3.0 90 101-195 3-92 (227)
119 cd00340 GSH_Peroxidase Glutath 98.6 1.6E-07 3.4E-12 72.7 8.0 41 118-159 21-63 (152)
120 PF00578 AhpC-TSA: AhpC/TSA fa 98.6 1.8E-07 4E-12 68.9 8.0 66 118-183 24-119 (124)
121 KOG3425 Uncharacterized conser 98.6 1.5E-07 3.3E-12 69.5 6.3 93 106-198 11-121 (128)
122 cd03014 PRX_Atyp2cys Peroxired 98.6 5.8E-07 1.3E-11 68.3 9.8 73 118-191 25-128 (143)
123 TIGR02540 gpx7 putative glutat 98.6 1.3E-07 2.9E-12 73.1 5.9 41 118-158 21-63 (153)
124 PRK00522 tpx lipid hydroperoxi 98.5 8E-07 1.7E-11 70.0 10.2 42 118-159 43-85 (167)
125 PF02966 DIM1: Mitosis protein 98.5 2.1E-06 4.5E-11 64.6 11.1 99 102-201 3-103 (133)
126 cd03017 PRX_BCP Peroxiredoxin 98.5 6.8E-07 1.5E-11 67.4 8.7 75 118-193 22-130 (140)
127 PF13728 TraF: F plasmid trans 98.5 1.7E-06 3.7E-11 71.0 11.2 69 114-183 115-194 (215)
128 KOG2501 Thioredoxin, nucleored 98.5 2.7E-07 5.9E-12 71.6 6.1 64 118-181 32-124 (157)
129 cd02970 PRX_like2 Peroxiredoxi 98.5 1.5E-06 3.2E-11 66.0 9.5 42 119-160 24-67 (149)
130 KOG0913 Thiol-disulfide isomer 98.4 4E-08 8.6E-13 80.5 -0.3 85 105-195 29-115 (248)
131 TIGR02180 GRX_euk Glutaredoxin 98.4 9.2E-07 2E-11 60.9 6.3 58 123-183 1-63 (84)
132 PLN02412 probable glutathione 98.4 9.4E-07 2E-11 69.6 6.7 42 118-159 28-71 (167)
133 cd02971 PRX_family Peroxiredox 98.3 4.7E-06 1E-10 62.7 9.1 76 118-194 21-131 (140)
134 cd03018 PRX_AhpE_like Peroxire 98.3 5E-06 1.1E-10 63.4 9.2 74 119-193 28-134 (149)
135 PF11009 DUF2847: Protein of u 98.3 7.7E-06 1.7E-10 59.6 9.6 82 102-183 2-89 (105)
136 TIGR03137 AhpC peroxiredoxin. 98.3 5.5E-06 1.2E-10 66.4 9.0 66 118-183 30-130 (187)
137 cd03015 PRX_Typ2cys Peroxiredo 98.3 5.3E-06 1.1E-10 65.4 8.6 42 118-159 28-72 (173)
138 cd02968 SCO SCO (an acronym fo 98.3 4.4E-06 9.5E-11 63.1 7.8 42 118-159 21-68 (142)
139 PRK11200 grxA glutaredoxin 1; 98.2 4.8E-06 1E-10 58.1 7.1 59 123-183 3-67 (85)
140 cd02976 NrdH NrdH-redoxin (Nrd 98.2 1.1E-05 2.3E-10 53.5 7.7 51 123-178 2-56 (73)
141 PRK09437 bcp thioredoxin-depen 98.2 1.1E-05 2.4E-10 62.1 8.3 74 118-192 29-139 (154)
142 PTZ00256 glutathione peroxidas 98.2 3.4E-06 7.4E-11 67.3 5.5 42 118-159 39-83 (183)
143 TIGR02739 TraF type-F conjugat 98.2 2.2E-05 4.9E-10 66.0 10.5 70 113-183 144-224 (256)
144 KOG3171 Conserved phosducin-li 98.1 1.3E-05 2.7E-10 65.2 8.2 89 100-190 139-228 (273)
145 PF13192 Thioredoxin_3: Thiore 98.1 2E-05 4.4E-10 53.9 7.7 62 124-192 3-64 (76)
146 PF03190 Thioredox_DsbH: Prote 98.1 3.2E-05 6.9E-10 60.8 9.6 72 108-181 28-111 (163)
147 TIGR02183 GRXA Glutaredoxin, G 98.1 1E-05 2.3E-10 56.7 6.2 59 123-183 2-66 (86)
148 PRK10382 alkyl hydroperoxide r 98.0 5.1E-05 1.1E-09 61.0 9.7 63 118-180 30-126 (187)
149 PRK10606 btuE putative glutath 98.0 1.7E-05 3.7E-10 63.5 6.0 41 118-159 24-66 (183)
150 COG2143 Thioredoxin-related pr 98.0 6.1E-05 1.3E-09 58.5 8.7 78 117-194 40-137 (182)
151 PRK13703 conjugal pilus assemb 98.0 8.4E-05 1.8E-09 62.2 10.1 69 118-187 142-221 (248)
152 cd03419 GRX_GRXh_1_2_like Glut 97.9 3.4E-05 7.3E-10 52.8 6.2 56 123-183 2-62 (82)
153 cd02991 UAS_ETEA UAS family, E 97.9 0.00019 4E-09 53.4 10.3 75 117-193 15-100 (116)
154 TIGR03143 AhpF_homolog putativ 97.9 6.3E-05 1.4E-09 69.9 9.3 73 108-183 465-538 (555)
155 PF00462 Glutaredoxin: Glutare 97.9 7.2E-05 1.6E-09 48.5 7.0 54 123-183 1-58 (60)
156 PRK15000 peroxidase; Provision 97.9 7.3E-05 1.6E-09 60.7 8.4 42 118-159 33-77 (200)
157 TIGR02190 GlrX-dom Glutaredoxi 97.9 5.3E-05 1.2E-09 52.1 6.2 57 120-183 7-66 (79)
158 PRK15317 alkyl hydroperoxide r 97.8 9.4E-05 2E-09 68.0 9.1 74 108-183 105-178 (517)
159 PRK13190 putative peroxiredoxi 97.8 0.00011 2.4E-09 59.7 8.2 63 118-180 26-124 (202)
160 cd02066 GRX_family Glutaredoxi 97.8 0.00011 2.3E-09 48.3 6.5 59 123-189 2-64 (72)
161 PTZ00137 2-Cys peroxiredoxin; 97.7 0.0002 4.4E-09 60.5 9.0 63 118-180 97-195 (261)
162 PF13848 Thioredoxin_6: Thiore 97.7 0.00093 2E-08 52.2 12.3 96 85-183 63-162 (184)
163 TIGR02194 GlrX_NrdH Glutaredox 97.7 0.00022 4.9E-09 48.0 7.3 50 124-178 2-54 (72)
164 PRK10877 protein disulfide iso 97.6 0.00022 4.8E-09 59.2 7.4 64 117-183 105-212 (232)
165 PHA03050 glutaredoxin; Provisi 97.6 0.00035 7.5E-09 51.3 7.4 59 123-183 15-78 (108)
166 PRK13599 putative peroxiredoxi 97.6 0.00032 7E-09 57.6 7.6 43 118-160 27-72 (215)
167 KOG3170 Conserved phosducin-li 97.6 0.00047 1E-08 55.6 8.1 82 99-183 91-172 (240)
168 PF07449 HyaE: Hydrogenase-1 e 97.5 0.00038 8.3E-09 51.0 6.9 82 107-191 16-100 (107)
169 TIGR03140 AhpF alkyl hydropero 97.5 0.00045 9.8E-09 63.5 9.0 74 108-183 106-179 (515)
170 cd03020 DsbA_DsbC_DsbG DsbA fa 97.5 0.0003 6.4E-09 56.6 6.6 62 118-183 76-182 (197)
171 PRK10329 glutaredoxin-like pro 97.5 0.00077 1.7E-08 46.8 7.8 51 123-178 3-56 (81)
172 PRK13191 putative peroxiredoxi 97.5 0.00052 1.1E-08 56.3 8.0 43 118-160 32-77 (215)
173 TIGR02181 GRX_bact Glutaredoxi 97.5 0.00036 7.7E-09 47.6 5.8 54 123-183 1-58 (79)
174 PTZ00253 tryparedoxin peroxida 97.5 0.00092 2E-08 54.0 9.0 42 118-159 35-79 (199)
175 cd02981 PDI_b_family Protein D 97.5 0.00088 1.9E-08 47.2 8.0 89 102-199 2-93 (97)
176 PRK11657 dsbG disulfide isomer 97.4 0.00092 2E-08 56.1 9.0 76 117-194 115-240 (251)
177 cd03016 PRX_1cys Peroxiredoxin 97.4 0.0007 1.5E-08 54.9 8.1 40 121-160 28-69 (203)
178 cd03418 GRX_GRXb_1_3_like Glut 97.4 0.00088 1.9E-08 45.0 7.1 54 123-183 2-60 (75)
179 TIGR02189 GlrX-like_plant Glut 97.4 0.00045 9.8E-09 49.8 5.9 54 123-183 10-70 (99)
180 cd03029 GRX_hybridPRX5 Glutare 97.4 0.00059 1.3E-08 45.8 6.1 54 123-183 3-59 (72)
181 PRK13189 peroxiredoxin; Provis 97.4 0.00092 2E-08 55.1 8.4 42 118-159 34-78 (222)
182 cd03027 GRX_DEP Glutaredoxin ( 97.3 0.0015 3.2E-08 44.0 7.1 54 123-183 3-60 (73)
183 cd02972 DsbA_family DsbA famil 97.2 0.0015 3.3E-08 44.9 6.5 58 123-180 1-91 (98)
184 cd03023 DsbA_Com1_like DsbA fa 97.1 0.0016 3.4E-08 49.2 6.3 40 118-157 4-43 (154)
185 TIGR03143 AhpF_homolog putativ 97.0 0.0062 1.3E-07 56.7 10.8 87 108-194 355-442 (555)
186 TIGR00365 monothiol glutaredox 97.0 0.0056 1.2E-07 43.8 8.2 57 120-183 12-76 (97)
187 PRK10824 glutaredoxin-4; Provi 97.0 0.0041 8.8E-08 46.2 7.1 57 120-183 15-79 (115)
188 cd03028 GRX_PICOT_like Glutare 96.9 0.003 6.5E-08 44.5 5.9 58 119-183 7-72 (90)
189 PF01216 Calsequestrin: Calseq 96.9 0.004 8.7E-08 54.2 7.2 95 100-200 35-140 (383)
190 PRK10638 glutaredoxin 3; Provi 96.9 0.005 1.1E-07 42.5 6.5 54 123-183 4-61 (83)
191 COG0695 GrxC Glutaredoxin and 96.8 0.0047 1E-07 42.7 6.2 54 123-183 3-62 (80)
192 PF05768 DUF836: Glutaredoxin- 96.8 0.0059 1.3E-07 42.1 6.5 54 123-178 2-55 (81)
193 cd02983 P5_C P5 family, C-term 96.3 0.092 2E-06 39.6 10.6 83 99-183 2-92 (130)
194 PTZ00062 glutaredoxin; Provisi 96.2 0.029 6.3E-07 45.7 7.8 48 129-183 126-177 (204)
195 PRK12759 bifunctional gluaredo 96.1 0.019 4.2E-07 51.6 7.1 54 123-183 4-69 (410)
196 KOG1752 Glutaredoxin and relat 96.0 0.031 6.6E-07 40.8 6.4 68 120-198 14-86 (104)
197 cd03019 DsbA_DsbA DsbA family, 95.5 0.03 6.5E-07 43.5 5.2 36 118-153 14-50 (178)
198 PF13462 Thioredoxin_4: Thiore 95.4 0.052 1.1E-06 41.4 6.1 42 117-158 10-54 (162)
199 KOG2603 Oligosaccharyltransfer 95.2 0.078 1.7E-06 45.7 7.1 83 100-183 41-137 (331)
200 cd03067 PDI_b_PDIR_N PDIb fami 94.9 0.25 5.4E-06 35.8 7.9 79 102-183 4-90 (112)
201 cd03073 PDI_b'_ERp72_ERp57 PDI 94.7 0.22 4.8E-06 36.5 7.6 50 132-181 31-86 (111)
202 PF13848 Thioredoxin_6: Thiore 94.7 0.097 2.1E-06 40.7 6.1 52 137-192 8-60 (184)
203 cd03072 PDI_b'_ERp44 PDIb' fam 94.7 0.31 6.8E-06 35.6 8.3 64 117-182 14-83 (111)
204 cd03013 PRX5_like Peroxiredoxi 94.2 0.12 2.6E-06 40.0 5.3 42 119-160 30-75 (155)
205 COG1225 Bcp Peroxiredoxin [Pos 94.1 0.18 3.8E-06 39.5 6.2 43 117-159 28-73 (157)
206 PRK10954 periplasmic protein d 93.7 0.1 2.3E-06 42.2 4.4 39 119-157 37-79 (207)
207 cd02974 AhpF_NTD_N Alkyl hydro 93.6 1.5 3.3E-05 31.1 9.9 75 108-194 8-82 (94)
208 cd02978 KaiB_like KaiB-like fa 93.3 0.41 8.9E-06 32.5 6.1 58 122-179 3-62 (72)
209 PF07912 ERp29_N: ERp29, N-ter 93.0 2.9 6.2E-05 31.4 10.7 79 109-191 13-102 (126)
210 cd03066 PDI_b_Calsequestrin_mi 92.9 1.8 3.9E-05 30.8 9.4 80 101-189 2-83 (102)
211 COG1331 Highly conserved prote 92.8 0.39 8.4E-06 45.5 7.1 73 107-183 33-120 (667)
212 PF00837 T4_deiodinase: Iodoth 92.7 0.18 3.9E-06 41.9 4.4 58 100-159 83-143 (237)
213 cd03069 PDI_b_ERp57 PDIb famil 92.7 1.4 3E-05 31.6 8.6 70 101-180 2-72 (104)
214 cd03031 GRX_GRX_like Glutaredo 92.2 0.68 1.5E-05 35.8 6.8 54 123-183 2-69 (147)
215 PRK09301 circadian clock prote 90.8 0.95 2.1E-05 32.9 5.8 77 118-196 4-82 (103)
216 PHA03075 glutaredoxin-like pro 90.8 0.46 1E-05 35.2 4.2 29 120-148 2-30 (123)
217 TIGR02654 circ_KaiB circadian 90.6 1 2.2E-05 31.7 5.7 75 120-196 3-79 (87)
218 cd03060 GST_N_Omega_like GST_N 89.8 1.4 2.9E-05 28.9 5.7 51 124-177 2-53 (71)
219 cd02977 ArsC_family Arsenate R 89.3 0.52 1.1E-05 33.8 3.6 32 124-160 2-33 (105)
220 cd03068 PDI_b_ERp72 PDIb famil 87.8 8.4 0.00018 27.8 9.5 84 101-192 2-92 (107)
221 TIGR01617 arsC_related transcr 87.8 1.3 2.8E-05 32.5 4.9 34 124-162 2-35 (117)
222 KOG2640 Thioredoxin [Function 86.3 0.18 4E-06 43.4 -0.4 70 111-180 68-138 (319)
223 PF06053 DUF929: Domain of unk 86.1 3.3 7.1E-05 34.8 6.9 57 117-180 56-113 (249)
224 PRK15317 alkyl hydroperoxide r 85.9 6.9 0.00015 36.0 9.7 75 108-194 8-82 (517)
225 PRK01655 spxA transcriptional 85.5 1.7 3.8E-05 32.7 4.6 33 123-160 2-34 (131)
226 cd03036 ArsC_like Arsenate Red 85.3 1.5 3.3E-05 31.9 4.1 32 124-160 2-33 (111)
227 cd03037 GST_N_GRX2 GST_N famil 85.1 2 4.3E-05 28.0 4.3 50 125-177 3-52 (71)
228 cd03040 GST_N_mPGES2 GST_N fam 84.5 2.7 5.8E-05 27.8 4.8 51 123-179 2-54 (77)
229 PF09673 TrbC_Ftype: Type-F co 84.2 4.7 0.0001 29.6 6.3 21 161-181 60-80 (113)
230 cd03035 ArsC_Yffb Arsenate Red 84.2 1.4 3E-05 31.9 3.4 32 124-160 2-33 (105)
231 cd03051 GST_N_GTT2_like GST_N 84.0 2.6 5.7E-05 27.2 4.5 52 124-178 2-57 (74)
232 cd00570 GST_N_family Glutathio 83.6 1.4 3E-05 27.5 3.0 51 125-178 3-55 (71)
233 TIGR03140 AhpF alkyl hydropero 83.2 12 0.00026 34.4 10.0 76 108-194 8-83 (515)
234 PF04592 SelP_N: Selenoprotein 83.2 2.4 5.2E-05 35.3 4.7 46 114-159 21-71 (238)
235 PF07689 KaiB: KaiB domain; I 80.7 0.63 1.4E-05 32.4 0.5 50 128-177 5-56 (82)
236 cd03032 ArsC_Spx Arsenate Redu 80.1 5 0.00011 29.2 5.2 33 123-160 2-34 (115)
237 PF13743 Thioredoxin_5: Thiore 79.6 4 8.6E-05 32.2 4.8 26 125-150 2-27 (176)
238 cd03045 GST_N_Delta_Epsilon GS 78.8 7.3 0.00016 25.3 5.3 51 124-177 2-56 (74)
239 cd03059 GST_N_SspA GST_N famil 78.5 6.3 0.00014 25.5 4.8 51 124-177 2-53 (73)
240 PRK12559 transcriptional regul 77.8 4.1 8.9E-05 30.7 4.2 32 123-159 2-33 (131)
241 COG3634 AhpF Alkyl hydroperoxi 77.5 12 0.00025 33.5 7.3 75 107-183 104-178 (520)
242 PF02630 SCO1-SenC: SCO1/SenC; 77.3 6.2 0.00014 31.0 5.3 42 118-159 51-97 (174)
243 KOG2792 Putative cytochrome C 75.6 6.7 0.00015 33.2 5.1 79 118-196 138-264 (280)
244 cd03041 GST_N_2GST_N GST_N fam 74.8 6 0.00013 26.3 4.0 49 124-177 3-55 (77)
245 PF01323 DSBA: DSBA-like thior 73.1 6 0.00013 30.7 4.2 31 122-152 1-31 (193)
246 cd03055 GST_N_Omega GST_N fami 72.8 14 0.00029 25.4 5.5 53 123-178 19-72 (89)
247 TIGR02742 TrbC_Ftype type-F co 71.9 6 0.00013 29.9 3.7 23 161-183 60-82 (130)
248 COG1651 DsbG Protein-disulfide 71.5 8.1 0.00018 31.6 4.8 38 119-156 84-121 (244)
249 COG3019 Predicted metal-bindin 71.1 14 0.0003 28.4 5.5 45 122-171 27-71 (149)
250 COG1999 Uncharacterized protei 70.0 28 0.00061 28.2 7.6 63 118-180 66-138 (207)
251 COG4545 Glutaredoxin-related p 69.1 11 0.00023 25.9 4.0 56 124-183 5-74 (85)
252 PF13417 GST_N_3: Glutathione 66.9 27 0.00058 22.9 5.8 53 126-183 2-55 (75)
253 PF01323 DSBA: DSBA-like thior 66.8 5.9 0.00013 30.8 2.9 29 161-194 156-184 (193)
254 PRK13344 spxA transcriptional 65.2 12 0.00026 28.2 4.2 32 123-159 2-33 (132)
255 PF13743 Thioredoxin_5: Thiore 63.9 6.2 0.00013 31.1 2.5 20 161-180 136-155 (176)
256 COG0278 Glutaredoxin-related p 62.4 25 0.00054 25.5 5.1 52 128-183 27-80 (105)
257 PF04134 DUF393: Protein of un 62.0 13 0.00028 26.6 3.8 57 126-183 2-61 (114)
258 cd03025 DsbA_FrnE_like DsbA fa 59.6 13 0.00028 28.9 3.7 27 123-149 3-29 (193)
259 cd03056 GST_N_4 GST_N family, 59.5 36 0.00077 21.6 5.3 52 124-178 2-57 (73)
260 cd03025 DsbA_FrnE_like DsbA fa 54.3 11 0.00023 29.4 2.4 23 161-183 158-180 (193)
261 cd02967 mauD Methylamine utili 51.4 22 0.00048 24.9 3.5 6 109-114 66-71 (114)
262 cd03019 DsbA_DsbA DsbA family, 50.3 10 0.00022 29.0 1.6 21 161-183 132-152 (178)
263 PF06764 DUF1223: Protein of u 48.5 81 0.0018 25.6 6.6 59 124-183 3-79 (202)
264 PRK10954 periplasmic protein d 48.2 13 0.00027 29.9 1.9 21 161-183 156-176 (207)
265 cd03052 GST_N_GDAP1 GST_N fami 46.5 67 0.0015 21.0 5.0 55 124-183 2-60 (73)
266 PF14424 Toxin-deaminase: The 44.2 85 0.0018 23.7 5.8 31 124-157 99-131 (133)
267 COG2077 Tpx Peroxiredoxin [Pos 43.2 77 0.0017 24.7 5.4 65 118-182 44-111 (158)
268 PF00255 GSHPx: Glutathione pe 42.8 76 0.0017 23.0 5.2 43 117-160 19-63 (108)
269 COG3531 Predicted protein-disu 40.3 23 0.00051 28.8 2.2 22 162-183 164-185 (212)
270 cd03021 DsbA_GSTK DsbA family, 38.3 25 0.00054 28.2 2.2 31 163-194 170-200 (209)
271 cd03053 GST_N_Phi GST_N family 36.8 1.1E+02 0.0025 19.5 5.3 52 123-177 2-57 (76)
272 cd03033 ArsC_15kD Arsenate Red 36.5 49 0.0011 24.1 3.4 21 123-143 2-22 (113)
273 PRK13730 conjugal transfer pil 36.1 1.1E+02 0.0025 25.0 5.6 29 161-191 151-179 (212)
274 TIGR00014 arsC arsenate reduct 34.1 58 0.0013 23.6 3.4 31 124-159 2-32 (114)
275 cd03034 ArsC_ArsC Arsenate Red 33.9 59 0.0013 23.4 3.4 30 124-158 2-31 (112)
276 COG2761 FrnE Predicted dithiol 33.7 36 0.00078 28.2 2.4 16 163-178 175-190 (225)
277 PF11287 DUF3088: Protein of u 30.8 86 0.0019 23.1 3.8 50 131-180 24-76 (112)
278 KOG0911 Glutaredoxin-related p 30.8 1.5E+02 0.0033 24.5 5.6 60 118-183 137-203 (227)
279 cd00307 RuBisCO_small_like Rib 29.9 50 0.0011 23.0 2.3 33 126-158 28-70 (84)
280 PRK09481 sspA stringent starva 29.8 1.3E+02 0.0027 23.8 5.1 57 118-177 6-63 (211)
281 COG5429 Uncharacterized secret 28.5 1.4E+02 0.0029 25.2 4.9 63 120-183 42-122 (261)
282 COG0295 Cdd Cytidine deaminase 27.8 1.2E+02 0.0026 23.1 4.2 9 130-138 87-95 (134)
283 PF09822 ABC_transp_aux: ABC-t 27.2 3.6E+02 0.0078 22.3 10.9 63 111-174 17-90 (271)
284 cd03058 GST_N_Tau GST_N family 26.5 1.8E+02 0.0039 18.5 4.7 49 125-177 3-54 (74)
285 cd03030 GRX_SH3BGR Glutaredoxi 25.7 2.2E+02 0.0047 19.9 5.0 18 150-167 30-47 (92)
286 cd03049 GST_N_3 GST_N family, 25.7 1.8E+02 0.0038 18.4 4.4 53 125-178 3-56 (73)
287 cd03074 PDI_b'_Calsequestrin_C 25.3 2.8E+02 0.0062 20.5 7.1 62 119-180 20-89 (120)
288 PF01216 Calsequestrin: Calseq 25.1 5E+02 0.011 23.2 8.5 92 88-180 238-337 (383)
289 KOG1651 Glutathione peroxidase 24.5 1.5E+02 0.0033 23.4 4.4 43 117-159 32-76 (171)
290 KOG0855 Alkyl hydroperoxide re 22.8 74 0.0016 25.4 2.3 30 118-147 89-123 (211)
291 COG1393 ArsC Arsenate reductas 22.3 1.3E+02 0.0027 22.2 3.4 23 123-145 3-25 (117)
292 PF03960 ArsC: ArsC family; I 22.0 2.2E+02 0.0047 20.2 4.6 30 126-160 1-30 (110)
293 COG2761 FrnE Predicted dithiol 21.1 2.4E+02 0.0052 23.4 5.1 31 120-150 4-35 (225)
294 PRK10853 putative reductase; P 21.0 1.4E+02 0.0029 21.9 3.4 31 123-158 2-32 (118)
295 COG0450 AhpC Peroxiredoxin [Po 20.2 2E+02 0.0044 23.3 4.4 41 119-159 33-76 (194)
No 1
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.1e-23 Score=154.52 Aligned_cols=89 Identities=43% Similarity=0.678 Sum_probs=80.1
Q ss_pred HHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHHHHcCCCcccEEEEEECCCeeEEEEe
Q 028819 111 VESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFS 190 (203)
Q Consensus 111 ~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g~~~v~~~~ 190 (203)
.......++++++|+|||+|||||+.+.|.+++++.+|+++.|++||+|+..++++.++|..+|||++|++|+ ++..+.
T Consensus 13 ~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~-~~~~~v 91 (106)
T KOG0907|consen 13 VLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGE-EVDEVV 91 (106)
T ss_pred HHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceEeeEEEEEECCE-EEEEEe
Confidence 3333345679999999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred cCCccccccc
Q 028819 191 CTNATVSTDS 200 (203)
Q Consensus 191 g~~~~i~~~~ 200 (203)
|++...++..
T Consensus 92 Ga~~~~l~~~ 101 (106)
T KOG0907|consen 92 GANKAELEKK 101 (106)
T ss_pred cCCHHHHHHH
Confidence 9998755443
No 2
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.90 E-value=4.6e-23 Score=152.64 Aligned_cols=87 Identities=14% Similarity=0.119 Sum_probs=80.0
Q ss_pred HhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC-cEEEEEECCCcHHHHHHcCCCcccEEEEEECCCee
Q 028819 107 AQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGR 185 (203)
Q Consensus 107 ~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g~~~ 185 (203)
.++|.+.+..++++++||+|||+||+||+.|.|.++++++++++ +.|++||+|++++++++|+|.++||+++|++|+ .
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~-~ 80 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNK-H 80 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCE-E
Confidence 56788888766789999999999999999999999999999998 799999999999999999999999999999999 8
Q ss_pred EEEEecCCc
Q 028819 186 VCSFSCTNA 194 (203)
Q Consensus 186 v~~~~g~~~ 194 (203)
+....|+-.
T Consensus 81 v~~~~G~~~ 89 (114)
T cd02954 81 MKIDLGTGN 89 (114)
T ss_pred EEEEcCCCC
Confidence 898888443
No 3
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3.5e-23 Score=158.40 Aligned_cols=93 Identities=22% Similarity=0.413 Sum_probs=85.2
Q ss_pred eEEeCCHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC-cEEEEEECCCcHHHHHHcCCCcccEEEEE
Q 028819 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179 (203)
Q Consensus 101 ~~~i~s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~ 179 (203)
...+.+.++|++.+. +++.||+|+|||+||+||+.+.|.++++..+|.| ++|++||.|++.+++.+|+|..+||+++|
T Consensus 44 ~~~~~s~~~~~~~Vi-~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvf 122 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVI-NSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVF 122 (150)
T ss_pred cccccCHHHHHHHHH-ccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEE
Confidence 344677888999887 5789999999999999999999999999999988 99999999999999999999999999999
Q ss_pred ECCCeeEEEEecCCcc
Q 028819 180 RGAHGRVCSFSCTNAT 195 (203)
Q Consensus 180 ~~g~~~v~~~~g~~~~ 195 (203)
+||+ ++.++.|+-+.
T Consensus 123 knGe-~~d~~vG~~~~ 137 (150)
T KOG0910|consen 123 KNGE-KVDRFVGAVPK 137 (150)
T ss_pred ECCE-EeeeecccCCH
Confidence 9999 88999987653
No 4
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.89 E-value=1.3e-22 Score=147.79 Aligned_cols=93 Identities=26% Similarity=0.410 Sum_probs=83.8
Q ss_pred CCHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcH---HHHHHcCCCcccEEEEEEC
Q 028819 105 ASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK---SMCYSLNVHVLPFFRFYRG 181 (203)
Q Consensus 105 ~s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~---~l~~~~~V~~~Pt~~~~~~ 181 (203)
++.++|.+.+....+++|||+|||+||++|+.+.|.+++++++++++.|+.||+|++. +++++|+|.++||+++|++
T Consensus 1 ~~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~ 80 (103)
T cd02985 1 HSVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKD 80 (103)
T ss_pred CCHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeC
Confidence 3578899998766799999999999999999999999999999988999999999874 7999999999999999999
Q ss_pred CCeeEEEEecCCccccc
Q 028819 182 AHGRVCSFSCTNATVST 198 (203)
Q Consensus 182 g~~~v~~~~g~~~~i~~ 198 (203)
|+ .+.++.|.+..-+.
T Consensus 81 G~-~v~~~~G~~~~~l~ 96 (103)
T cd02985 81 GE-KIHEEEGIGPDELI 96 (103)
T ss_pred Ce-EEEEEeCCCHHHHH
Confidence 98 89999998875443
No 5
>PHA02278 thioredoxin-like protein
Probab=99.87 E-value=1.9e-21 Score=142.01 Aligned_cols=86 Identities=20% Similarity=0.272 Sum_probs=76.9
Q ss_pred CCHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC-cEEEEEECCCc----HHHHHHcCCCcccEEEEE
Q 028819 105 ASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEH----KSMCYSLNVHVLPFFRFY 179 (203)
Q Consensus 105 ~s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~----~~l~~~~~V~~~Pt~~~~ 179 (203)
++.++|.+.+ .+++++||+|||+||+||+.+.|.++++++++.+ +.|+.||+|.+ +.++++|+|.++||+++|
T Consensus 2 ~~~~~~~~~i--~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~f 79 (103)
T PHA02278 2 NSLVDLNTAI--RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGY 79 (103)
T ss_pred CCHHHHHHHH--hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEE
Confidence 4678888888 4788999999999999999999999999988544 78999999975 689999999999999999
Q ss_pred ECCCeeEEEEecCC
Q 028819 180 RGAHGRVCSFSCTN 193 (203)
Q Consensus 180 ~~g~~~v~~~~g~~ 193 (203)
++|+ .+.++.|..
T Consensus 80 k~G~-~v~~~~G~~ 92 (103)
T PHA02278 80 KDGQ-LVKKYEDQV 92 (103)
T ss_pred ECCE-EEEEEeCCC
Confidence 9998 899999944
No 6
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.86 E-value=3e-21 Score=140.28 Aligned_cols=96 Identities=22% Similarity=0.362 Sum_probs=85.8
Q ss_pred EeCCHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC--cEEEEEECCCcHHHHHHcCCCcccEEEEEE
Q 028819 103 EVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 180 (203)
Q Consensus 103 ~i~s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~--v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~ 180 (203)
.+.+.++|.+.+ +++++++|+|||+||++|+.+.|.++++++++++ +.|+.+|+| +++++++|+|.++||+++|+
T Consensus 3 ~i~~~~~~~~~i--~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~ 79 (102)
T cd02948 3 EINNQEEWEELL--SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYK 79 (102)
T ss_pred EccCHHHHHHHH--ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEE
Confidence 478889999987 4688999999999999999999999999999874 899999999 78899999999999999999
Q ss_pred CCCeeEEEEecCCccccccccC
Q 028819 181 GAHGRVCSFSCTNATVSTDSVD 202 (203)
Q Consensus 181 ~g~~~v~~~~g~~~~i~~~~v~ 202 (203)
+|+ .+.+..|.+.+-+...||
T Consensus 80 ~g~-~~~~~~G~~~~~~~~~i~ 100 (102)
T cd02948 80 NGE-LVAVIRGANAPLLNKTIT 100 (102)
T ss_pred CCE-EEEEEecCChHHHHHHHh
Confidence 998 899999988776666555
No 7
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.86 E-value=4.4e-21 Score=141.45 Aligned_cols=95 Identities=11% Similarity=0.170 Sum_probs=81.7
Q ss_pred HhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC-cEEEEEECCCcHHHHHHcCCCcccEEEEEECCCee
Q 028819 107 AQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGR 185 (203)
Q Consensus 107 ~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g~~~ 185 (203)
.+++.+.+...++++|||+|+|+||+||+.+.|.++++++++++ +.|++||+|+.+++++.|+|...||+++|++|+-.
T Consensus 2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~ 81 (114)
T cd02986 2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHM 81 (114)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEE
Confidence 46788888866899999999999999999999999999999999 99999999999999999999999999999999844
Q ss_pred EEEEecCCcccccccc
Q 028819 186 VCSFSCTNATVSTDSV 201 (203)
Q Consensus 186 v~~~~g~~~~i~~~~v 201 (203)
...+--.+.+.+++.+
T Consensus 82 ~~d~gt~~~~k~~~~~ 97 (114)
T cd02986 82 KVDYGSPDHTKFVGSF 97 (114)
T ss_pred EEecCCCCCcEEEEEc
Confidence 4455444445555443
No 8
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.86 E-value=3.2e-21 Score=147.91 Aligned_cols=95 Identities=15% Similarity=0.137 Sum_probs=85.6
Q ss_pred eEEeCCHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC-cEEEEEECCCcHHHHHHcCCCcccEEE-E
Q 028819 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFR-F 178 (203)
Q Consensus 101 ~~~i~s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~~l~~~~~V~~~Pt~~-~ 178 (203)
+.++.+.+++.+.+...++++|||+|||+||+||+.+.|.++++++++++ +.|++||+|+++++++.|+|.+.|+++ +
T Consensus 5 l~~l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~f 84 (142)
T PLN00410 5 LPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFF 84 (142)
T ss_pred HhhhCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEE
Confidence 34678899999999877899999999999999999999999999999998 888999999999999999999776666 9
Q ss_pred EECCCeeEEEEecCCcc
Q 028819 179 YRGAHGRVCSFSCTNAT 195 (203)
Q Consensus 179 ~~~g~~~v~~~~g~~~~ 195 (203)
|++|+..+.+.+|.+.+
T Consensus 85 fk~g~~~vd~~tG~~~k 101 (142)
T PLN00410 85 FRNKHIMIDLGTGNNNK 101 (142)
T ss_pred EECCeEEEEEecccccc
Confidence 99998788899996643
No 9
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.86 E-value=8.7e-21 Score=140.69 Aligned_cols=93 Identities=24% Similarity=0.391 Sum_probs=85.9
Q ss_pred CCeEEeCCHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHHHHcCCCcccEEEE
Q 028819 99 PNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF 178 (203)
Q Consensus 99 ~~~~~i~s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~ 178 (203)
..+.+|++.++|.+.+. ++++|+|+||++||++|+.+.|.+++++++++++.|++||.+++++++++|+|..+||+++
T Consensus 4 g~v~~i~~~~~~~~~i~--~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~ 81 (113)
T cd02989 4 GKYREVSDEKEFFEIVK--SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLPTVIL 81 (113)
T ss_pred CCeEEeCCHHHHHHHHh--CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCCEEEE
Confidence 46778999999999984 5689999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCeeEEEEecCCc
Q 028819 179 YRGAHGRVCSFSCTNA 194 (203)
Q Consensus 179 ~~~g~~~v~~~~g~~~ 194 (203)
|++|+ .+.++.|..+
T Consensus 82 fk~G~-~v~~~~g~~~ 96 (113)
T cd02989 82 FKNGK-TVDRIVGFEE 96 (113)
T ss_pred EECCE-EEEEEECccc
Confidence 99998 8888888644
No 10
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.85 E-value=1.1e-20 Score=136.60 Aligned_cols=91 Identities=18% Similarity=0.383 Sum_probs=80.0
Q ss_pred CeEEeCCHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC-cEEEEEECCCcHHHHHHcCCCcccEEEE
Q 028819 100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRF 178 (203)
Q Consensus 100 ~~~~i~s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~ 178 (203)
++.++ +.++|.+.+ ..+++++|+||++||++|+.+.|.++++++++++ +.|++||+++++.++++++|.++||+++
T Consensus 2 ~~~~l-~~~~f~~~v--~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 78 (101)
T cd03003 2 EIVTL-DRGDFDAAV--NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYV 78 (101)
T ss_pred CeEEc-CHhhHHHHh--cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEE
Confidence 44555 456788777 4568999999999999999999999999999986 8999999999999999999999999999
Q ss_pred EECCCeeEEEEecCCc
Q 028819 179 YRGAHGRVCSFSCTNA 194 (203)
Q Consensus 179 ~~~g~~~v~~~~g~~~ 194 (203)
|++|+ .+..|.|...
T Consensus 79 ~~~g~-~~~~~~G~~~ 93 (101)
T cd03003 79 FPSGM-NPEKYYGDRS 93 (101)
T ss_pred EcCCC-CcccCCCCCC
Confidence 99998 7888888544
No 11
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.4e-21 Score=158.40 Aligned_cols=101 Identities=32% Similarity=0.516 Sum_probs=95.0
Q ss_pred CeEEeCCHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHHHHcCCCcccEEEEE
Q 028819 100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179 (203)
Q Consensus 100 ~~~~i~s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~ 179 (203)
.+..|.+.++|...+...+.|.|+|+|+|+|||||+++.|.+.+++.+|++..|++||+|+.+..+..+||...|||++|
T Consensus 2 ~Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amPTFiff 81 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMPTFIFF 81 (288)
T ss_pred CeEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCceEEEE
Confidence 46789999999999998899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCeeEEEEecCCcccccccc
Q 028819 180 RGAHGRVCSFSCTNATVSTDSV 201 (203)
Q Consensus 180 ~~g~~~v~~~~g~~~~i~~~~v 201 (203)
+||. ++..++|+++.-++..|
T Consensus 82 ~ng~-kid~~qGAd~~gLe~kv 102 (288)
T KOG0908|consen 82 RNGV-KIDQIQGADASGLEEKV 102 (288)
T ss_pred ecCe-EeeeecCCCHHHHHHHH
Confidence 9999 99999999987665544
No 12
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.85 E-value=2.5e-20 Score=138.34 Aligned_cols=94 Identities=14% Similarity=0.192 Sum_probs=79.3
Q ss_pred CCeEEeCCHhHHHHHHH-ccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC-cEEEEEECCCcHHHH-HHcCCCcccE
Q 028819 99 PNMREVASAQDLVESLW-HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMC-YSLNVHVLPF 175 (203)
Q Consensus 99 ~~~~~i~s~~~~~~~l~-~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~~l~-~~~~V~~~Pt 175 (203)
+++.++++. .|.+.+. ..++++++|+|||+||++|+.+.|.++++++++++ +.|++||++++..+| ++|+|.++||
T Consensus 9 ~~v~~l~~~-~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PT 87 (113)
T cd03006 9 SPVLDFYKG-QLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPV 87 (113)
T ss_pred CCeEEechh-hhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCE
Confidence 345555543 4555421 36789999999999999999999999999999987 899999999999999 5899999999
Q ss_pred EEEEECCCeeEEEEecCCc
Q 028819 176 FRFYRGAHGRVCSFSCTNA 194 (203)
Q Consensus 176 ~~~~~~g~~~v~~~~g~~~ 194 (203)
+++|++|+ ....|.|...
T Consensus 88 l~lf~~g~-~~~~y~G~~~ 105 (113)
T cd03006 88 IHLYYRSR-GPIEYKGPMR 105 (113)
T ss_pred EEEEECCc-cceEEeCCCC
Confidence 99999998 6788988654
No 13
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.85 E-value=1.3e-20 Score=139.31 Aligned_cols=93 Identities=27% Similarity=0.512 Sum_probs=83.0
Q ss_pred CeEEeCCHhHHHHHHHccC-CCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHHHHcCCCcccEEEE
Q 028819 100 NMREVASAQDLVESLWHAG-DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF 178 (203)
Q Consensus 100 ~~~~i~s~~~~~~~l~~~~-~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~ 178 (203)
.+.++++ ++|.+.+.+.+ +++++|+||++||++|+.+.|.+++++++++++.|++||++++ .++++|+|.++||+++
T Consensus 5 ~v~~i~~-~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i~~~Pt~~~ 82 (113)
T cd02957 5 EVREISS-KEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDIKVLPTLLV 82 (113)
T ss_pred eEEEEcH-HHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCCCcCCEEEE
Confidence 4667777 88888886432 5899999999999999999999999999999999999999988 9999999999999999
Q ss_pred EECCCeeEEEEecCCcc
Q 028819 179 YRGAHGRVCSFSCTNAT 195 (203)
Q Consensus 179 ~~~g~~~v~~~~g~~~~ 195 (203)
|++|+ .+.++.|..+.
T Consensus 83 f~~G~-~v~~~~G~~~~ 98 (113)
T cd02957 83 YKNGE-LIDNIVGFEEL 98 (113)
T ss_pred EECCE-EEEEEecHHHh
Confidence 99998 89999986543
No 14
>PTZ00051 thioredoxin; Provisional
Probab=99.84 E-value=3.7e-20 Score=132.67 Aligned_cols=95 Identities=22% Similarity=0.442 Sum_probs=87.0
Q ss_pred eEEeCCHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHHHHcCCCcccEEEEEE
Q 028819 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 180 (203)
Q Consensus 101 ~~~i~s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~ 180 (203)
+.++++.+++.+.+ ..+++++|+||++||++|+.+.|.+++++++++++.|+.+|++++..++++|+|.++||+++|+
T Consensus 2 v~~i~~~~~~~~~~--~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 79 (98)
T PTZ00051 2 VHIVTSQAEFESTL--SQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMPTFKVFK 79 (98)
T ss_pred eEEecCHHHHHHHH--hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceeeEEEEEe
Confidence 56788999998887 4678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEecCCccccc
Q 028819 181 GAHGRVCSFSCTNATVST 198 (203)
Q Consensus 181 ~g~~~v~~~~g~~~~i~~ 198 (203)
+|+ .+..+.|.+.+.++
T Consensus 80 ~g~-~~~~~~G~~~~~~~ 96 (98)
T PTZ00051 80 NGS-VVDTLLGANDEALK 96 (98)
T ss_pred CCe-EEEEEeCCCHHHhh
Confidence 998 89999998776543
No 15
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.84 E-value=3.2e-20 Score=134.60 Aligned_cols=92 Identities=25% Similarity=0.490 Sum_probs=80.3
Q ss_pred eEEeCCHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC-cEEEEEECCCcHHHHHHcCCCcccEEEEE
Q 028819 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179 (203)
Q Consensus 101 ~~~i~s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~ 179 (203)
+.++ +.++|.+.+. .++++++|+|||+||++|+.+.|.++++++++.+ +.|++||++++++++++++|.++||+++|
T Consensus 3 v~~l-~~~~f~~~i~-~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 80 (104)
T cd03004 3 VITL-TPEDFPELVL-NRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLY 80 (104)
T ss_pred ceEc-CHHHHHHHHh-cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEE
Confidence 4444 4567887776 4677999999999999999999999999999875 99999999999999999999999999999
Q ss_pred ECCCeeEEEEecCCc
Q 028819 180 RGAHGRVCSFSCTNA 194 (203)
Q Consensus 180 ~~g~~~v~~~~g~~~ 194 (203)
++|++.+..|.|...
T Consensus 81 ~~g~~~~~~~~G~~~ 95 (104)
T cd03004 81 PGNASKYHSYNGWHR 95 (104)
T ss_pred cCCCCCceEccCCCC
Confidence 998448999999643
No 16
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.83 E-value=3.3e-20 Score=134.62 Aligned_cols=85 Identities=14% Similarity=0.254 Sum_probs=76.2
Q ss_pred hHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECC-CcHHHHHHcCCCcccEEEEEECCCeeE
Q 028819 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE-EHKSMCYSLNVHVLPFFRFYRGAHGRV 186 (203)
Q Consensus 108 ~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d-~~~~l~~~~~V~~~Pt~~~~~~g~~~v 186 (203)
+.+.+++...++++++|+|||+||++|+.+.|.+++++++++++.|+.||.+ +++.++++|+|.++||+++|++| .+
T Consensus 7 ~~~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g--~~ 84 (100)
T cd02999 7 NIALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST--PR 84 (100)
T ss_pred hHHHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC--ce
Confidence 3456666667899999999999999999999999999999999999999998 79999999999999999999887 57
Q ss_pred EEEecCCc
Q 028819 187 CSFSCTNA 194 (203)
Q Consensus 187 ~~~~g~~~ 194 (203)
.++.|...
T Consensus 85 ~~~~G~~~ 92 (100)
T cd02999 85 VRYNGTRT 92 (100)
T ss_pred eEecCCCC
Confidence 88998643
No 17
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.83 E-value=6.3e-20 Score=131.10 Aligned_cols=84 Identities=24% Similarity=0.371 Sum_probs=76.0
Q ss_pred HHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC-cEEEEEECCCcHHHHHHcCCCcccEEEEEECCCeeEE
Q 028819 109 DLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVC 187 (203)
Q Consensus 109 ~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g~~~v~ 187 (203)
+|.+.+.+..+++++|+||++||++|+.+.|.++++++.+++ +.|+.||+++++.++++|+|.++||+++|++|+ .+.
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~-~~~ 80 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQ-PVD 80 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCE-Eee
Confidence 466667655688999999999999999999999999999976 899999999999999999999999999999887 788
Q ss_pred EEecCC
Q 028819 188 SFSCTN 193 (203)
Q Consensus 188 ~~~g~~ 193 (203)
.+.|..
T Consensus 81 ~~~g~~ 86 (96)
T cd02956 81 GFQGAQ 86 (96)
T ss_pred eecCCC
Confidence 898864
No 18
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.82 E-value=2e-19 Score=128.51 Aligned_cols=93 Identities=26% Similarity=0.422 Sum_probs=82.1
Q ss_pred CHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHh-CCCcEEEEEECCCcHHHHHHcCCCcccEEEEEECCCe
Q 028819 106 SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEM-NPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHG 184 (203)
Q Consensus 106 s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~-~~~v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g~~ 184 (203)
+.+++.+.+....+++++|+||++||++|+.+.|.+++++++ ++++.|+.+|.+++++++++|+|.++||+++|++|+
T Consensus 1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~- 79 (97)
T cd02984 1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGT- 79 (97)
T ss_pred CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCE-
Confidence 356788888755579999999999999999999999999999 556999999999999999999999999999999997
Q ss_pred eEEEEecCCcccccc
Q 028819 185 RVCSFSCTNATVSTD 199 (203)
Q Consensus 185 ~v~~~~g~~~~i~~~ 199 (203)
.+..+.|.+.+-+..
T Consensus 80 ~~~~~~g~~~~~l~~ 94 (97)
T cd02984 80 IVDRVSGADPKELAK 94 (97)
T ss_pred EEEEEeCCCHHHHHH
Confidence 889999987655543
No 19
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.81 E-value=3.6e-19 Score=138.48 Aligned_cols=94 Identities=17% Similarity=0.306 Sum_probs=82.3
Q ss_pred CCeEEeCCHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCC--CcEEEEEECCCcHHHHHHcCCCc----
Q 028819 99 PNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEEHKSMCYSLNVHV---- 172 (203)
Q Consensus 99 ~~~~~i~s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d~~~~l~~~~~V~~---- 172 (203)
..+.+++ .++|.+.+....+++++|+||++||++|+.+.|.+++++++++ ++.|++||++++++++++|+|..
T Consensus 28 ~~v~~l~-~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v 106 (152)
T cd02962 28 EHIKYFT-PKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLS 106 (152)
T ss_pred CccEEcC-HHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCc
Confidence 3555555 5678888765567899999999999999999999999999986 39999999999999999999998
Q ss_pred --ccEEEEEECCCeeEEEEecCCc
Q 028819 173 --LPFFRFYRGAHGRVCSFSCTNA 194 (203)
Q Consensus 173 --~Pt~~~~~~g~~~v~~~~g~~~ 194 (203)
+||+++|++|+ ++.++.|.+.
T Consensus 107 ~~~PT~ilf~~Gk-~v~r~~G~~~ 129 (152)
T cd02962 107 KQLPTIILFQGGK-EVARRPYYND 129 (152)
T ss_pred CCCCEEEEEECCE-EEEEEecccc
Confidence 99999999998 8999998544
No 20
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.81 E-value=3.4e-19 Score=127.77 Aligned_cols=86 Identities=28% Similarity=0.558 Sum_probs=79.1
Q ss_pred CCHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCC-CcEEEEEECCCcHHHHHHcCCCcccEEEEEECCC
Q 028819 105 ASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH 183 (203)
Q Consensus 105 ~s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~-~v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g~ 183 (203)
.+.++|.+.+.+ +++++||+||++||++|+.+.|.+.+++++++ ++.|+.||+++++.++++|+|.++||+++|++|+
T Consensus 4 lt~~~f~~~i~~-~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~ 82 (103)
T PF00085_consen 4 LTDENFEKFINE-SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKNGK 82 (103)
T ss_dssp ESTTTHHHHHTT-TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEETTE
T ss_pred CCHHHHHHHHHc-cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEECCc
Confidence 455678888853 58999999999999999999999999999998 6999999999999999999999999999999998
Q ss_pred eeEEEEecC
Q 028819 184 GRVCSFSCT 192 (203)
Q Consensus 184 ~~v~~~~g~ 192 (203)
.+.++.|.
T Consensus 83 -~~~~~~g~ 90 (103)
T PF00085_consen 83 -EVKRYNGP 90 (103)
T ss_dssp -EEEEEESS
T ss_pred -EEEEEECC
Confidence 78899997
No 21
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.3e-19 Score=152.18 Aligned_cols=95 Identities=23% Similarity=0.425 Sum_probs=84.3
Q ss_pred CeEEeCCHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC-cEEEEEECCCcHHHHHHcCCCcccEEEE
Q 028819 100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRF 178 (203)
Q Consensus 100 ~~~~i~s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~ 178 (203)
.+.++++.+--.+.+..+..+||||+||+|||++|+.+.|.+++++.+|.| +.+++||||+++.++.+|||+++||++.
T Consensus 24 ~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~a 103 (304)
T COG3118 24 GIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYA 103 (304)
T ss_pred cceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEE
Confidence 466676665444555555667999999999999999999999999999998 9999999999999999999999999999
Q ss_pred EECCCeeEEEEecCCcc
Q 028819 179 YRGAHGRVCSFSCTNAT 195 (203)
Q Consensus 179 ~~~g~~~v~~~~g~~~~ 195 (203)
|++|+ .|..|.|..++
T Consensus 104 f~dGq-pVdgF~G~qPe 119 (304)
T COG3118 104 FKDGQ-PVDGFQGAQPE 119 (304)
T ss_pred eeCCc-CccccCCCCcH
Confidence 99999 99999998765
No 22
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.81 E-value=3.8e-19 Score=141.54 Aligned_cols=97 Identities=23% Similarity=0.435 Sum_probs=86.5
Q ss_pred CCCeEEeCCHhHHHHHHHcc-CCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHHHHcCCCcccEE
Q 028819 98 QPNMREVASAQDLVESLWHA-GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 176 (203)
Q Consensus 98 ~~~~~~i~s~~~~~~~l~~~-~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~V~~~Pt~ 176 (203)
...+.+|++.++|.+.+... .+.+|||+||++||++|+.+.|.|.+++++|+++.|++||+++. .++.+|+|..+||+
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v~~vPTl 139 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDTDALPAL 139 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCCCCCCEE
Confidence 34778898888899888642 24599999999999999999999999999999999999999987 89999999999999
Q ss_pred EEEECCCeeEEEEecCCccc
Q 028819 177 RFYRGAHGRVCSFSCTNATV 196 (203)
Q Consensus 177 ~~~~~g~~~v~~~~g~~~~i 196 (203)
++|++|+ .+.++.|.....
T Consensus 140 llyk~G~-~v~~~vG~~~~~ 158 (175)
T cd02987 140 LVYKGGE-LIGNFVRVTEDL 158 (175)
T ss_pred EEEECCE-EEEEEechHHhc
Confidence 9999998 899999877644
No 23
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.79 E-value=8.1e-19 Score=129.47 Aligned_cols=87 Identities=13% Similarity=0.124 Sum_probs=76.3
Q ss_pred CHhHHHHHHH-ccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCC--CcEEEEEECCCcHHHHHHcCCCcccEEEEEECC
Q 028819 106 SAQDLVESLW-HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGA 182 (203)
Q Consensus 106 s~~~~~~~l~-~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g 182 (203)
+.++|.+.+. ...+++++|+|||+||++|+.+.|.+++++++++ ++.|+.||+++++.++++++|.++||+++|++|
T Consensus 10 ~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g 89 (111)
T cd02963 10 TFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIING 89 (111)
T ss_pred eHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECC
Confidence 4566765554 3468999999999999999999999999999986 489999999999999999999999999999999
Q ss_pred CeeEEEEecCC
Q 028819 183 HGRVCSFSCTN 193 (203)
Q Consensus 183 ~~~v~~~~g~~ 193 (203)
+ .+..+.|..
T Consensus 90 ~-~~~~~~G~~ 99 (111)
T cd02963 90 Q-VTFYHDSSF 99 (111)
T ss_pred E-EEEEecCCC
Confidence 7 788888854
No 24
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.79 E-value=8e-19 Score=131.41 Aligned_cols=91 Identities=11% Similarity=0.100 Sum_probs=78.8
Q ss_pred CeEEeCCHhHHHHHHHccCCCeEEEEEECCCChh--hH--HHHHHHHHHHHhC--CC-cEEEEEECCCcHHHHHHcCCCc
Q 028819 100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGG--CK--ALHPKICQLAEMN--PD-VQFLQVNYEEHKSMCYSLNVHV 172 (203)
Q Consensus 100 ~~~~i~s~~~~~~~l~~~~~k~vvV~F~a~WC~~--Ck--~~~p~l~~la~~~--~~-v~f~~Vd~d~~~~l~~~~~V~~ 172 (203)
.+..++ .++|.+.+. +++.++|++||++||++ |+ .+.|.+.+++.++ ++ +.|++||+|++++++++|+|.+
T Consensus 10 ~v~~lt-~~nF~~~v~-~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~ 87 (120)
T cd03065 10 RVIDLN-EKNYKQVLK-KYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDE 87 (120)
T ss_pred ceeeCC-hhhHHHHHH-hCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCcc
Confidence 444454 577887776 56789999999999988 99 8899999999987 54 9999999999999999999999
Q ss_pred ccEEEEEECCCeeEEEEecCCc
Q 028819 173 LPFFRFYRGAHGRVCSFSCTNA 194 (203)
Q Consensus 173 ~Pt~~~~~~g~~~v~~~~g~~~ 194 (203)
+||+++|++|+ .+. +.|..+
T Consensus 88 iPTl~lfk~G~-~v~-~~G~~~ 107 (120)
T cd03065 88 EDSIYVFKDDE-VIE-YDGEFA 107 (120)
T ss_pred ccEEEEEECCE-EEE-eeCCCC
Confidence 99999999998 676 999765
No 25
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.79 E-value=1.2e-18 Score=128.33 Aligned_cols=85 Identities=15% Similarity=0.138 Sum_probs=76.7
Q ss_pred HhHHHHHHHccCCCeEEEEEECCC--ChhhHHHHHHHHHHHHhCCC-cEEEEEECCCcHHHHHHcCCCcccEEEEEECCC
Q 028819 107 AQDLVESLWHAGDKLVVVDFFSPG--CGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH 183 (203)
Q Consensus 107 ~~~~~~~l~~~~~k~vvV~F~a~W--C~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g~ 183 (203)
..+|.+.+ ..+.+++|.||++| ||+|+.+.|.+++++++|++ +.|++||++++++++.+|+|.++||+++|++|+
T Consensus 17 ~~~~~~~~--~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~fkdGk 94 (111)
T cd02965 17 AATLDDWL--AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFFRDGR 94 (111)
T ss_pred cccHHHHH--hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEEECCE
Confidence 34566555 56789999999997 99999999999999999988 899999999999999999999999999999998
Q ss_pred eeEEEEecCCc
Q 028819 184 GRVCSFSCTNA 194 (203)
Q Consensus 184 ~~v~~~~g~~~ 194 (203)
.+..+.|...
T Consensus 95 -~v~~~~G~~~ 104 (111)
T cd02965 95 -YVGVLAGIRD 104 (111)
T ss_pred -EEEEEeCccC
Confidence 8999999654
No 26
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.78 E-value=2.2e-18 Score=126.08 Aligned_cols=91 Identities=16% Similarity=0.347 Sum_probs=76.1
Q ss_pred eEEeCCHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhC----C---CcEEEEEECCCcHHHHHHcCCCcc
Q 028819 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN----P---DVQFLQVNYEEHKSMCYSLNVHVL 173 (203)
Q Consensus 101 ~~~i~s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~----~---~v~f~~Vd~d~~~~l~~~~~V~~~ 173 (203)
+.++ +.++|.+.+ ..+++++|+|||+||++|+++.|.++++++.+ + .+.|+.||+++++.++++|+|.++
T Consensus 3 v~~l-~~~~f~~~i--~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~ 79 (108)
T cd02996 3 IVSL-TSGNIDDIL--QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKY 79 (108)
T ss_pred eEEc-CHhhHHHHH--hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcC
Confidence 4445 456788776 46789999999999999999999999998763 2 389999999999999999999999
Q ss_pred cEEEEEECCCeeEEEEecCCc
Q 028819 174 PFFRFYRGAHGRVCSFSCTNA 194 (203)
Q Consensus 174 Pt~~~~~~g~~~v~~~~g~~~ 194 (203)
||+++|++|+.....+.|...
T Consensus 80 Ptl~~~~~g~~~~~~~~g~~~ 100 (108)
T cd02996 80 PTLKLFRNGMMMKREYRGQRS 100 (108)
T ss_pred CEEEEEeCCcCcceecCCCCC
Confidence 999999999834477777543
No 27
>PRK09381 trxA thioredoxin; Provisional
Probab=99.78 E-value=4.9e-18 Score=124.18 Aligned_cols=91 Identities=13% Similarity=0.343 Sum_probs=79.7
Q ss_pred CeEEeCCHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC-cEEEEEECCCcHHHHHHcCCCcccEEEE
Q 028819 100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRF 178 (203)
Q Consensus 100 ~~~~i~s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~ 178 (203)
.+.+++. ++|.+.+. ..+++++|+||++||++|+.+.|.++++++.+++ +.|+.+|++.++.++++|+|.++||+++
T Consensus 4 ~v~~~~~-~~~~~~v~-~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 81 (109)
T PRK09381 4 KIIHLTD-DSFDTDVL-KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL 81 (109)
T ss_pred cceeeCh-hhHHHHHh-cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEE
Confidence 4566644 56776654 4688999999999999999999999999999976 8999999999999999999999999999
Q ss_pred EECCCeeEEEEecCC
Q 028819 179 YRGAHGRVCSFSCTN 193 (203)
Q Consensus 179 ~~~g~~~v~~~~g~~ 193 (203)
|++|+ .+..+.|..
T Consensus 82 ~~~G~-~~~~~~G~~ 95 (109)
T PRK09381 82 FKNGE-VAATKVGAL 95 (109)
T ss_pred EeCCe-EEEEecCCC
Confidence 99997 788888864
No 28
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.76 E-value=8.4e-18 Score=120.85 Aligned_cols=85 Identities=25% Similarity=0.491 Sum_probs=74.8
Q ss_pred CHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCC----CcEEEEEECCCcHHHHHHcCCCcccEEEEEEC
Q 028819 106 SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRG 181 (203)
Q Consensus 106 s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~----~v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~ 181 (203)
+.++|.+.+. ++ +++|+||++||++|+.+.|.+.++++++. ++.|+.||++++..++++|+|.++||+++|++
T Consensus 6 ~~~~f~~~~~--~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 82 (102)
T cd03005 6 TEDNFDHHIA--EG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLFKD 82 (102)
T ss_pred CHHHHHHHhh--cC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEEeC
Confidence 4567887773 33 59999999999999999999999998875 38999999999999999999999999999999
Q ss_pred CCeeEEEEecCCc
Q 028819 182 AHGRVCSFSCTNA 194 (203)
Q Consensus 182 g~~~v~~~~g~~~ 194 (203)
|+ .+..+.|...
T Consensus 83 g~-~~~~~~G~~~ 94 (102)
T cd03005 83 GE-KVDKYKGTRD 94 (102)
T ss_pred CC-eeeEeeCCCC
Confidence 98 7888998664
No 29
>PRK10996 thioredoxin 2; Provisional
Probab=99.76 E-value=1e-17 Score=128.46 Aligned_cols=87 Identities=24% Similarity=0.488 Sum_probs=77.9
Q ss_pred CCHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC-cEEEEEECCCcHHHHHHcCCCcccEEEEEECCC
Q 028819 105 ASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH 183 (203)
Q Consensus 105 ~s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g~ 183 (203)
.+.++|.+.+ .++++++|+||++||++|+.+.|.+.++++++.+ +.|+++|+++++.++++|+|.++||+++|++|+
T Consensus 40 ~~~~~~~~~i--~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~ 117 (139)
T PRK10996 40 ATGETLDKLL--QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFKNGQ 117 (139)
T ss_pred cCHHHHHHHH--hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEEECCE
Confidence 3567777766 4689999999999999999999999999998765 999999999999999999999999999999988
Q ss_pred eeEEEEecCCc
Q 028819 184 GRVCSFSCTNA 194 (203)
Q Consensus 184 ~~v~~~~g~~~ 194 (203)
.+..+.|...
T Consensus 118 -~v~~~~G~~~ 127 (139)
T PRK10996 118 -VVDMLNGAVP 127 (139)
T ss_pred -EEEEEcCCCC
Confidence 8888888654
No 30
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.76 E-value=6.3e-18 Score=123.16 Aligned_cols=87 Identities=23% Similarity=0.491 Sum_probs=74.8
Q ss_pred CHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC-cEEEEEECCC--cHHHHHHcCCCcccEEEEEECC
Q 028819 106 SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEE--HKSMCYSLNVHVLPFFRFYRGA 182 (203)
Q Consensus 106 s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~--~~~l~~~~~V~~~Pt~~~~~~g 182 (203)
+.++|.+.+. ..+++++|+||++||++|+.+.|.++++++.+++ +.|+.+|+++ ++.++++|+|.++||+++|++|
T Consensus 6 ~~~~~~~~i~-~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~~~ 84 (109)
T cd03002 6 TPKNFDKVVH-NTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFRPP 84 (109)
T ss_pred chhhHHHHHh-cCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEEeCC
Confidence 3456777775 4688999999999999999999999999999876 8999999998 8899999999999999999988
Q ss_pred C----eeEEEEecCC
Q 028819 183 H----GRVCSFSCTN 193 (203)
Q Consensus 183 ~----~~v~~~~g~~ 193 (203)
+ .....|.|..
T Consensus 85 ~~~~~~~~~~~~G~~ 99 (109)
T cd03002 85 KKASKHAVEDYNGER 99 (109)
T ss_pred CcccccccccccCcc
Confidence 6 2456677754
No 31
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.76 E-value=1.3e-17 Score=120.18 Aligned_cols=87 Identities=15% Similarity=0.348 Sum_probs=73.3
Q ss_pred eEEeCCHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCC--CcEEEEEECCCcHHHHHHcCCCcccEEEE
Q 028819 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEEHKSMCYSLNVHVLPFFRF 178 (203)
Q Consensus 101 ~~~i~s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~ 178 (203)
+.+++ .++|.+.+ . ++ ++|+|||+||++|+.+.|.++++++.++ ++.|+.+|+++++.++++|+|.++||+++
T Consensus 3 v~~l~-~~~f~~~~--~-~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02994 3 VVELT-DSNWTLVL--E-GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYH 77 (101)
T ss_pred eEEcC-hhhHHHHh--C-CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEE
Confidence 44554 56787765 2 33 7899999999999999999999998875 48999999999999999999999999999
Q ss_pred EECCCeeEEEEecCCc
Q 028819 179 YRGAHGRVCSFSCTNA 194 (203)
Q Consensus 179 ~~~g~~~v~~~~g~~~ 194 (203)
|++|+ +..+.|...
T Consensus 78 ~~~g~--~~~~~G~~~ 91 (101)
T cd02994 78 AKDGV--FRRYQGPRD 91 (101)
T ss_pred eCCCC--EEEecCCCC
Confidence 98886 577888543
No 32
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.75 E-value=1.4e-17 Score=119.95 Aligned_cols=88 Identities=19% Similarity=0.403 Sum_probs=76.8
Q ss_pred CHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC-cEEEEEECCCcHHHHHHcCCCcccEEEEEECCCe
Q 028819 106 SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHG 184 (203)
Q Consensus 106 s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g~~ 184 (203)
+.+++.+.+. ..+++++|+||++||++|+.+.|.+.++++++++ +.|+.+|+++++.++++|+|.++|++++|.+|+.
T Consensus 6 ~~~~~~~~i~-~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~ 84 (103)
T cd03001 6 TDSNFDKKVL-NSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGAGKN 84 (103)
T ss_pred CHHhHHHHHh-cCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECCCCc
Confidence 4567777775 4567899999999999999999999999998865 9999999999999999999999999999998855
Q ss_pred eEEEEecCCc
Q 028819 185 RVCSFSCTNA 194 (203)
Q Consensus 185 ~v~~~~g~~~ 194 (203)
....|.|...
T Consensus 85 ~~~~~~g~~~ 94 (103)
T cd03001 85 SPQDYQGGRT 94 (103)
T ss_pred ceeecCCCCC
Confidence 7778887544
No 33
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.74 E-value=3.1e-17 Score=118.12 Aligned_cols=89 Identities=22% Similarity=0.440 Sum_probs=75.8
Q ss_pred EEeCCHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCC--C-cEEEEEECCC--cHHHHHHcCCCcccEE
Q 028819 102 REVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--D-VQFLQVNYEE--HKSMCYSLNVHVLPFF 176 (203)
Q Consensus 102 ~~i~s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~--~-v~f~~Vd~d~--~~~l~~~~~V~~~Pt~ 176 (203)
.+++ .+++.+.+ +.+++++|+||++||++|+++.|.+.++++.++ + +.++.+|+++ ++.++++++|.++||+
T Consensus 3 ~~l~-~~~~~~~~--~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~ 79 (104)
T cd02997 3 VHLT-DEDFRKFL--KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTF 79 (104)
T ss_pred EEec-hHhHHHHH--hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEE
Confidence 4444 44677777 356699999999999999999999999998875 3 8899999998 9999999999999999
Q ss_pred EEEECCCeeEEEEecCCc
Q 028819 177 RFYRGAHGRVCSFSCTNA 194 (203)
Q Consensus 177 ~~~~~g~~~v~~~~g~~~ 194 (203)
++|++|+ .+..+.|...
T Consensus 80 ~~~~~g~-~~~~~~g~~~ 96 (104)
T cd02997 80 KYFENGK-FVEKYEGERT 96 (104)
T ss_pred EEEeCCC-eeEEeCCCCC
Confidence 9999998 7888888543
No 34
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.73 E-value=1.5e-17 Score=124.28 Aligned_cols=95 Identities=15% Similarity=0.319 Sum_probs=82.5
Q ss_pred EeCCHhHHHHHHHccCCCeEEEEEEC-------CCChhhHHHHHHHHHHHHhCC-CcEEEEEECCC-------cHHHHHH
Q 028819 103 EVASAQDLVESLWHAGDKLVVVDFFS-------PGCGGCKALHPKICQLAEMNP-DVQFLQVNYEE-------HKSMCYS 167 (203)
Q Consensus 103 ~i~s~~~~~~~l~~~~~k~vvV~F~a-------~WC~~Ck~~~p~l~~la~~~~-~v~f~~Vd~d~-------~~~l~~~ 167 (203)
.+.+.++|.+.+...++++++|+||| +||++|+.+.|.+++++++++ ++.|++||+++ +.+++.+
T Consensus 5 ~~~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~ 84 (119)
T cd02952 5 AVRGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTD 84 (119)
T ss_pred cccCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhc
Confidence 36778899999976568899999999 999999999999999999998 59999999976 4689999
Q ss_pred cCCC-cccEEEEEECCCeeEEEEecCCccccc
Q 028819 168 LNVH-VLPFFRFYRGAHGRVCSFSCTNATVST 198 (203)
Q Consensus 168 ~~V~-~~Pt~~~~~~g~~~v~~~~g~~~~i~~ 198 (203)
++|. ++||+++|++|+ ++....+-+.++..
T Consensus 85 ~~I~~~iPT~~~~~~~~-~l~~~~c~~~~~~~ 115 (119)
T cd02952 85 PKLTTGVPTLLRWKTPQ-RLVEDECLQADLVE 115 (119)
T ss_pred cCcccCCCEEEEEcCCc-eecchhhcCHHHHH
Confidence 9999 999999998886 78777776666543
No 35
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.72 E-value=5.2e-17 Score=131.02 Aligned_cols=92 Identities=24% Similarity=0.335 Sum_probs=78.0
Q ss_pred CCCeEEeCCHhHHHHHHHcc-CCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHHHHcCCCcccEE
Q 028819 98 QPNMREVASAQDLVESLWHA-GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFF 176 (203)
Q Consensus 98 ~~~~~~i~s~~~~~~~l~~~-~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~V~~~Pt~ 176 (203)
...+.+++ .++|...+..+ .+.+|||+||++||++|+.+.|.|.+++++|++++|++||++.. ...|+|..+||+
T Consensus 81 ~G~v~eis-~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~---~~~~~i~~lPTl 156 (192)
T cd02988 81 FGEVYEIS-KPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC---IPNYPDKNLPTI 156 (192)
T ss_pred CCeEEEeC-HHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HhhCCCCCCCEE
Confidence 34677775 45677666533 35699999999999999999999999999999999999998753 589999999999
Q ss_pred EEEECCCeeEEEEecCCc
Q 028819 177 RFYRGAHGRVCSFSCTNA 194 (203)
Q Consensus 177 ~~~~~g~~~v~~~~g~~~ 194 (203)
++|++|+ .+.++.|...
T Consensus 157 liyk~G~-~v~~ivG~~~ 173 (192)
T cd02988 157 LVYRNGD-IVKQFIGLLE 173 (192)
T ss_pred EEEECCE-EEEEEeCchh
Confidence 9999998 8999988644
No 36
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.72 E-value=6.3e-17 Score=118.78 Aligned_cols=86 Identities=15% Similarity=0.298 Sum_probs=73.4
Q ss_pred HhHHHHHHH-ccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC--cEEEEEECCC-cHHHHH-HcCCCcccEEEEEEC
Q 028819 107 AQDLVESLW-HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEE-HKSMCY-SLNVHVLPFFRFYRG 181 (203)
Q Consensus 107 ~~~~~~~l~-~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~--v~f~~Vd~d~-~~~l~~-~~~V~~~Pt~~~~~~ 181 (203)
.++|...+. ...+++++|.||++||++|+.+.|.+.++++.+.+ +.++.||++. +..++. .++|..+||+++|.+
T Consensus 8 ~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~f~~ 87 (109)
T cd02993 8 RAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILFFPK 87 (109)
T ss_pred HHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEEEEcC
Confidence 346776664 24678999999999999999999999999998864 8999999997 577886 499999999999988
Q ss_pred CCeeEEEEecC
Q 028819 182 AHGRVCSFSCT 192 (203)
Q Consensus 182 g~~~v~~~~g~ 192 (203)
|......|.|.
T Consensus 88 ~~~~~~~y~g~ 98 (109)
T cd02993 88 NSRQPIKYPSE 98 (109)
T ss_pred CCCCceeccCC
Confidence 76678889884
No 37
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.72 E-value=1.1e-16 Score=114.96 Aligned_cols=82 Identities=21% Similarity=0.463 Sum_probs=73.8
Q ss_pred HHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC-cEEEEEECCCcHHHHHHcCCCcccEEEEEECCCeeEEEE
Q 028819 111 VESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSF 189 (203)
Q Consensus 111 ~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g~~~v~~~ 189 (203)
...+. +.+++++|+||++||+.|+.+.|.++++++++++ +.++.+|++++++++++++|.++||+++|++|+ .+.++
T Consensus 6 ~~~~~-~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~-~v~~~ 83 (97)
T cd02949 6 RKLYH-ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKE-LVKEI 83 (97)
T ss_pred HHHHH-hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCe-EEEEE
Confidence 33444 5789999999999999999999999999999875 999999999999999999999999999999987 88999
Q ss_pred ecCCc
Q 028819 190 SCTNA 194 (203)
Q Consensus 190 ~g~~~ 194 (203)
.|...
T Consensus 84 ~g~~~ 88 (97)
T cd02949 84 SGVKM 88 (97)
T ss_pred eCCcc
Confidence 88654
No 38
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.72 E-value=1.1e-16 Score=114.18 Aligned_cols=86 Identities=24% Similarity=0.493 Sum_probs=76.3
Q ss_pred HhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC-cEEEEEECCCcHHHHHHcCCCcccEEEEEECCCee
Q 028819 107 AQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGR 185 (203)
Q Consensus 107 ~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g~~~ 185 (203)
.+++.+.+. ..+++++|+||++||++|+.+.|.++++++++++ +.|+.+|+++++.++++|+|..+|++++|++|+ .
T Consensus 3 ~~~~~~~~~-~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~-~ 80 (101)
T TIGR01068 3 DANFDETIA-SSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGK-E 80 (101)
T ss_pred HHHHHHHHh-hcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCc-E
Confidence 466777775 4567999999999999999999999999988875 999999999999999999999999999999887 6
Q ss_pred EEEEecCCc
Q 028819 186 VCSFSCTNA 194 (203)
Q Consensus 186 v~~~~g~~~ 194 (203)
+..+.|...
T Consensus 81 ~~~~~g~~~ 89 (101)
T TIGR01068 81 VDRSVGALP 89 (101)
T ss_pred eeeecCCCC
Confidence 777777654
No 39
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.71 E-value=6.6e-17 Score=124.49 Aligned_cols=84 Identities=19% Similarity=0.330 Sum_probs=71.9
Q ss_pred hHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC-cEEEEEECCCc--HHHHHHcCCCcccEEEEEE-CCC
Q 028819 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEH--KSMCYSLNVHVLPFFRFYR-GAH 183 (203)
Q Consensus 108 ~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~--~~l~~~~~V~~~Pt~~~~~-~g~ 183 (203)
.++.+.+ ..++++||+|||+||++|+.+.|.+.++++++.+ +.|+.||+|.. ..++++|+|.++||+++|. +|+
T Consensus 11 ~~~~~a~--~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~ 88 (142)
T cd02950 11 TPPEVAL--SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGN 88 (142)
T ss_pred CCHHHHH--hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCC
Confidence 3455555 5789999999999999999999999999999875 88998888764 5789999999999999995 677
Q ss_pred eeEEEEecCCc
Q 028819 184 GRVCSFSCTNA 194 (203)
Q Consensus 184 ~~v~~~~g~~~ 194 (203)
.+..+.|...
T Consensus 89 -~v~~~~G~~~ 98 (142)
T cd02950 89 -EEGQSIGLQP 98 (142)
T ss_pred -EEEEEeCCCC
Confidence 8888999664
No 40
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.71 E-value=1.2e-16 Score=131.54 Aligned_cols=90 Identities=11% Similarity=0.198 Sum_probs=76.9
Q ss_pred CeEEeCCHhHHHHHHHcc---CCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC-cEEEEEECCCcHHHHHHcCCCcccE
Q 028819 100 NMREVASAQDLVESLWHA---GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPF 175 (203)
Q Consensus 100 ~~~~i~s~~~~~~~l~~~---~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~~l~~~~~V~~~Pt 175 (203)
.+.++ +.++|.+.+... .+++++|+|||+||++|+.+.|.++++++++++ +.|+.+|++++++++++|+|.++||
T Consensus 31 ~Vv~L-t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PT 109 (224)
T PTZ00443 31 ALVLL-NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPT 109 (224)
T ss_pred CcEEC-CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCE
Confidence 45555 466788776532 368999999999999999999999999999987 8999999999999999999999999
Q ss_pred EEEEECCCeeEEEEec
Q 028819 176 FRFYRGAHGRVCSFSC 191 (203)
Q Consensus 176 ~~~~~~g~~~v~~~~g 191 (203)
+++|++|+ .+..+.|
T Consensus 110 l~~f~~G~-~v~~~~G 124 (224)
T PTZ00443 110 LLLFDKGK-MYQYEGG 124 (224)
T ss_pred EEEEECCE-EEEeeCC
Confidence 99999887 5555556
No 41
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.70 E-value=1.3e-16 Score=118.14 Aligned_cols=82 Identities=16% Similarity=0.244 Sum_probs=70.5
Q ss_pred HHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHHHHcCCCcccEEEEEECCCeeEE--
Q 028819 110 LVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVC-- 187 (203)
Q Consensus 110 ~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g~~~v~-- 187 (203)
+.+.+ .+++.++|+||++||++|+.+.|.+++++++++.+.|..+|.+++++++.+|+|.++||+++|++|+ ...
T Consensus 15 ~~~~l--~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~-~~~~~ 91 (113)
T cd02975 15 FFKEM--KNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGG-KDGGI 91 (113)
T ss_pred HHHHh--CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCe-ecceE
Confidence 55555 4577899999999999999999999999998877999999999999999999999999999999874 222
Q ss_pred EEecCCc
Q 028819 188 SFSCTNA 194 (203)
Q Consensus 188 ~~~g~~~ 194 (203)
.|.|...
T Consensus 92 ~~~G~~~ 98 (113)
T cd02975 92 RYYGLPA 98 (113)
T ss_pred EEEecCc
Confidence 6777543
No 42
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.70 E-value=7e-17 Score=117.19 Aligned_cols=84 Identities=23% Similarity=0.325 Sum_probs=70.6
Q ss_pred hHHHHHHHccCCCeEEEEEECCCChhhHHHHHHH---HHHHHhCC-CcEEEEEECCC----cHHHHHHcCCCcccEEEEE
Q 028819 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKI---CQLAEMNP-DVQFLQVNYEE----HKSMCYSLNVHVLPFFRFY 179 (203)
Q Consensus 108 ~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l---~~la~~~~-~v~f~~Vd~d~----~~~l~~~~~V~~~Pt~~~~ 179 (203)
++|.+.+ .++++++|+||++||++|+.+.|.+ .++++.+. ++.++.||+++ .+.++++|+|.++||+++|
T Consensus 2 ~~~~~~~--~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~ 79 (104)
T cd02953 2 AALAQAL--AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFY 79 (104)
T ss_pred HHHHHHH--HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEE
Confidence 4566666 5689999999999999999999988 57887777 59999999987 5789999999999999999
Q ss_pred E--CCCeeEEEEecCCc
Q 028819 180 R--GAHGRVCSFSCTNA 194 (203)
Q Consensus 180 ~--~g~~~v~~~~g~~~ 194 (203)
+ +|+ .+.++.|...
T Consensus 80 ~~~~g~-~~~~~~G~~~ 95 (104)
T cd02953 80 GPGGEP-EPLRLPGFLT 95 (104)
T ss_pred CCCCCC-CCcccccccC
Confidence 8 566 6777777543
No 43
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.70 E-value=1.6e-16 Score=113.76 Aligned_cols=85 Identities=22% Similarity=0.468 Sum_probs=75.7
Q ss_pred HhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC---cEEEEEECCCcHHHHHHcCCCcccEEEEEECCC
Q 028819 107 AQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD---VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH 183 (203)
Q Consensus 107 ~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~---v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g~ 183 (203)
.++|.+.+ .++++++|+||++||++|+.+.|.++++++.+.+ +.++.+|+++++.++++|+|.++|++++|++|+
T Consensus 3 ~~~~~~~~--~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~ 80 (102)
T TIGR01126 3 ASNFDDIV--LSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGK 80 (102)
T ss_pred hhhHHHHh--ccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCC
Confidence 45677776 3788999999999999999999999999998874 999999999999999999999999999999887
Q ss_pred eeEEEEecCCc
Q 028819 184 GRVCSFSCTNA 194 (203)
Q Consensus 184 ~~v~~~~g~~~ 194 (203)
.+..|.|...
T Consensus 81 -~~~~~~g~~~ 90 (102)
T TIGR01126 81 -KPVDYEGGRD 90 (102)
T ss_pred -cceeecCCCC
Confidence 4888988644
No 44
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.69 E-value=2e-16 Score=113.80 Aligned_cols=85 Identities=25% Similarity=0.427 Sum_probs=72.1
Q ss_pred HhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC---cEEEEEECCCcHHHHHHcCCCcccEEEEEECCC
Q 028819 107 AQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD---VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH 183 (203)
Q Consensus 107 ~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~---v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g~ 183 (203)
.++|.+.+. ..+++++|+||++||++|+.+.|.+.++++.+++ +.|+.+|++++ +++..+++.++||+++|.+|+
T Consensus 7 ~~~f~~~i~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~~~~~ 84 (104)
T cd02995 7 GKNFDEVVL-DSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFFPAGD 84 (104)
T ss_pred hhhhHHHHh-CCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEEcCCC
Confidence 456777765 4568999999999999999999999999998765 89999999987 588899999999999998886
Q ss_pred -eeEEEEecCC
Q 028819 184 -GRVCSFSCTN 193 (203)
Q Consensus 184 -~~v~~~~g~~ 193 (203)
.+...|.|..
T Consensus 85 ~~~~~~~~g~~ 95 (104)
T cd02995 85 KSNPIKYEGDR 95 (104)
T ss_pred cCCceEccCCc
Confidence 4566777754
No 45
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.69 E-value=1.6e-16 Score=119.32 Aligned_cols=93 Identities=9% Similarity=0.130 Sum_probs=73.7
Q ss_pred CCHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcH-----------HHHHHcC----
Q 028819 105 ASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK-----------SMCYSLN---- 169 (203)
Q Consensus 105 ~s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~-----------~l~~~~~---- 169 (203)
.+.+++.+.+ .+++.++|+||++|||+|+.+.|.+.+++++ .++.++.||.|.+. ++.+.|+
T Consensus 11 it~~~~~~~i--~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~-~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (122)
T TIGR01295 11 TTVVRALEAL--DKKETATFFIGRKTCPYCRKFSGTLSGVVAQ-TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTS 87 (122)
T ss_pred cCHHHHHHHH--HcCCcEEEEEECCCChhHHHHhHHHHHHHHh-cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCccc
Confidence 4556788888 4678899999999999999999999999998 45889999988542 4556665
Q ss_pred CCcccEEEEEECCCeeEEEEecCCc---ccccccc
Q 028819 170 VHVLPFFRFYRGAHGRVCSFSCTNA---TVSTDSV 201 (203)
Q Consensus 170 V~~~Pt~~~~~~g~~~v~~~~g~~~---~i~~~~v 201 (203)
|.++||+++|++|+ .+..+.|... +|+++.+
T Consensus 88 i~~~PT~v~~k~Gk-~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 88 FMGTPTFVHITDGK-QVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred CCCCCEEEEEeCCe-EEEEEeCCCCCHHHHHHHhh
Confidence 55699999999999 8999988543 4444443
No 46
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.69 E-value=2.4e-16 Score=113.38 Aligned_cols=90 Identities=24% Similarity=0.459 Sum_probs=75.5
Q ss_pred EEeCCHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCC---CcEEEEEECCC-cHHHHHHcCCCcccEEE
Q 028819 102 REVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---DVQFLQVNYEE-HKSMCYSLNVHVLPFFR 177 (203)
Q Consensus 102 ~~i~s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~---~v~f~~Vd~d~-~~~l~~~~~V~~~Pt~~ 177 (203)
.+++ .+++.+.+. ..+++++|+||++||++|+.+.|.+.++++.++ ++.++.+|+++ ++.++++++|.++|+++
T Consensus 3 ~~l~-~~~~~~~~~-~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~ 80 (105)
T cd02998 3 VELT-DSNFDKVVG-DDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLK 80 (105)
T ss_pred EEcc-hhcHHHHhc-CCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEE
Confidence 3443 356666553 466799999999999999999999999999875 39999999999 99999999999999999
Q ss_pred EEECCCeeEEEEecCC
Q 028819 178 FYRGAHGRVCSFSCTN 193 (203)
Q Consensus 178 ~~~~g~~~v~~~~g~~ 193 (203)
+|.+|+.....+.|..
T Consensus 81 ~~~~~~~~~~~~~g~~ 96 (105)
T cd02998 81 FFPKGSTEPVKYEGGR 96 (105)
T ss_pred EEeCCCCCccccCCcc
Confidence 9998854677777753
No 47
>PTZ00062 glutaredoxin; Provisional
Probab=99.68 E-value=1.3e-16 Score=129.51 Aligned_cols=85 Identities=16% Similarity=0.149 Sum_probs=75.2
Q ss_pred eCCHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHHHHcCCCcccEEEEEECCC
Q 028819 104 VASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH 183 (203)
Q Consensus 104 i~s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g~ 183 (203)
..+.+++.+.+. .+...+|++|||+||++|+.+.|.+.+++++|+++.|+.||.| |+|.++|||++|++|+
T Consensus 3 ~~~~ee~~~~i~-~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------~~V~~vPtfv~~~~g~ 73 (204)
T PTZ00062 3 FIKKEEKDKLIE-SNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------DANNEYGVFEFYQNSQ 73 (204)
T ss_pred CCCHHHHHHHHh-cCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc--------cCcccceEEEEEECCE
Confidence 356788888884 2336789999999999999999999999999999999999977 9999999999999999
Q ss_pred eeEEEEecCCccccc
Q 028819 184 GRVCSFSCTNATVST 198 (203)
Q Consensus 184 ~~v~~~~g~~~~i~~ 198 (203)
.+.++.|++..-+.
T Consensus 74 -~i~r~~G~~~~~~~ 87 (204)
T PTZ00062 74 -LINSLEGCNTSTLV 87 (204)
T ss_pred -EEeeeeCCCHHHHH
Confidence 89999999875544
No 48
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.68 E-value=3.2e-16 Score=110.90 Aligned_cols=86 Identities=23% Similarity=0.454 Sum_probs=75.1
Q ss_pred CHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhC---CCcEEEEEECCCcHHHHHHcCCCcccEEEEEECC
Q 028819 106 SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN---PDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGA 182 (203)
Q Consensus 106 s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~---~~v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g 182 (203)
+.++|.+.+. ++++++|+||++||++|+.+.|.+.++++.+ .++.|+.+|+++++.++++|+|.++||+++|.+|
T Consensus 4 ~~~~~~~~i~--~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~ 81 (101)
T cd02961 4 TDDNFDELVK--DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNG 81 (101)
T ss_pred cHHHHHHHHh--CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCC
Confidence 3467777774 4559999999999999999999999999988 3499999999999999999999999999999888
Q ss_pred CeeEEEEecCC
Q 028819 183 HGRVCSFSCTN 193 (203)
Q Consensus 183 ~~~v~~~~g~~ 193 (203)
...+.++.|..
T Consensus 82 ~~~~~~~~g~~ 92 (101)
T cd02961 82 SKEPVKYEGPR 92 (101)
T ss_pred CcccccCCCCc
Confidence 44788888864
No 49
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.68 E-value=2e-16 Score=114.96 Aligned_cols=81 Identities=19% Similarity=0.414 Sum_probs=68.5
Q ss_pred hHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCC----CcEEEEEECCCcHHHHHHcCCCcccEEEEEECCC
Q 028819 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH 183 (203)
Q Consensus 108 ~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~----~v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g~ 183 (203)
++|.+ + .++++++|+||++||++|+.+.|.++++++++. ++.++.+|+++.+.++++|+|.++||+++|++|.
T Consensus 7 ~~~~~-~--~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~ 83 (104)
T cd03000 7 DSFKD-V--RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDL 83 (104)
T ss_pred hhhhh-h--ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCC
Confidence 44554 3 346799999999999999999999999998873 3899999999999999999999999999997654
Q ss_pred eeEEEEecCC
Q 028819 184 GRVCSFSCTN 193 (203)
Q Consensus 184 ~~v~~~~g~~ 193 (203)
+..+.|..
T Consensus 84 --~~~~~G~~ 91 (104)
T cd03000 84 --AYNYRGPR 91 (104)
T ss_pred --ceeecCCC
Confidence 56677743
No 50
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.65 E-value=9.6e-16 Score=113.67 Aligned_cols=77 Identities=23% Similarity=0.457 Sum_probs=66.5
Q ss_pred CHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCC---C-cEEEEEECC--CcHHHHHHcCCCcccEEEEE
Q 028819 106 SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---D-VQFLQVNYE--EHKSMCYSLNVHVLPFFRFY 179 (203)
Q Consensus 106 s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~---~-v~f~~Vd~d--~~~~l~~~~~V~~~Pt~~~~ 179 (203)
+.++|.+.+. ..+++++|+||++||++|+.+.|.|+++++++. + +.|+.+|++ .++.++++|+|+++||+++|
T Consensus 7 ~~~~f~~~i~-~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~lf 85 (114)
T cd02992 7 DAASFNSALL-GSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLRYF 85 (114)
T ss_pred CHHhHHHHHh-cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEEEE
Confidence 4567777776 445899999999999999999999999998764 3 899999985 46789999999999999999
Q ss_pred ECCC
Q 028819 180 RGAH 183 (203)
Q Consensus 180 ~~g~ 183 (203)
++|.
T Consensus 86 ~~~~ 89 (114)
T cd02992 86 PPFS 89 (114)
T ss_pred CCCC
Confidence 8876
No 51
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.65 E-value=1.8e-15 Score=105.01 Aligned_cols=83 Identities=33% Similarity=0.616 Sum_probs=73.8
Q ss_pred HHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHHHHcCCCcccEEEEEECCCeeEEE
Q 028819 109 DLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCS 188 (203)
Q Consensus 109 ~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g~~~v~~ 188 (203)
++...+. .+++++|+||++||++|+.+.|.++++++..+++.|+.+|+++.+.+++.|++.++|++++|.+|+ .+..
T Consensus 2 ~~~~~~~--~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~-~~~~ 78 (93)
T cd02947 2 EFEELIK--SAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGK-EVDR 78 (93)
T ss_pred chHHHHh--cCCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcccccEEEEEECCE-EEEE
Confidence 3555563 448999999999999999999999999998777999999999999999999999999999999987 7888
Q ss_pred EecCCc
Q 028819 189 FSCTNA 194 (203)
Q Consensus 189 ~~g~~~ 194 (203)
+.|...
T Consensus 79 ~~g~~~ 84 (93)
T cd02947 79 VVGADP 84 (93)
T ss_pred EecCCC
Confidence 888665
No 52
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.61 E-value=4.8e-15 Score=110.98 Aligned_cols=85 Identities=19% Similarity=0.298 Sum_probs=68.3
Q ss_pred hHHHHHHHccCC-CeEEEEEECCCChhhHHHHHHHH---HHHHhCC-CcEEEEEECCCc-------------HHHHHHcC
Q 028819 108 QDLVESLWHAGD-KLVVVDFFSPGCGGCKALHPKIC---QLAEMNP-DVQFLQVNYEEH-------------KSMCYSLN 169 (203)
Q Consensus 108 ~~~~~~l~~~~~-k~vvV~F~a~WC~~Ck~~~p~l~---~la~~~~-~v~f~~Vd~d~~-------------~~l~~~~~ 169 (203)
+++.+.. ..+ ++++|+||++||++|+.+.|.+. ++.+.+. ++.++.||.++. ..++.+|+
T Consensus 4 ~~~~~a~--~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~ 81 (125)
T cd02951 4 EDLAEAA--ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYR 81 (125)
T ss_pred HHHHHHH--HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcC
Confidence 4555666 456 89999999999999999999884 5555554 488999998864 68999999
Q ss_pred CCcccEEEEEECC-CeeEEEEecCCc
Q 028819 170 VHVLPFFRFYRGA-HGRVCSFSCTNA 194 (203)
Q Consensus 170 V~~~Pt~~~~~~g-~~~v~~~~g~~~ 194 (203)
|.++||+++|.++ ...+.++.|...
T Consensus 82 v~~~Pt~~~~~~~gg~~~~~~~G~~~ 107 (125)
T cd02951 82 VRFTPTVIFLDPEGGKEIARLPGYLP 107 (125)
T ss_pred CccccEEEEEcCCCCceeEEecCCCC
Confidence 9999999999864 337888888654
No 53
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.59 E-value=9.3e-15 Score=131.42 Aligned_cols=91 Identities=16% Similarity=0.302 Sum_probs=75.0
Q ss_pred CeEEeCCHhHHHHHHH-ccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC--cEEEEEECCCcH-HHH-HHcCCCccc
Q 028819 100 NMREVASAQDLVESLW-HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEEHK-SMC-YSLNVHVLP 174 (203)
Q Consensus 100 ~~~~i~s~~~~~~~l~-~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~--v~f~~Vd~d~~~-~l~-~~~~V~~~P 174 (203)
.+.+++ .++|.+.+. ...++++||+|||+||++|+.+.|.|+++++++.+ +.|+.||+|.+. .++ ++|+|.++|
T Consensus 352 ~Vv~L~-~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~P 430 (463)
T TIGR00424 352 NVVSLS-RPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFP 430 (463)
T ss_pred CeEECC-HHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccc
Confidence 444544 456888774 46789999999999999999999999999999864 899999999753 454 789999999
Q ss_pred EEEEEECCCeeEEEEec
Q 028819 175 FFRFYRGAHGRVCSFSC 191 (203)
Q Consensus 175 t~~~~~~g~~~v~~~~g 191 (203)
|+++|++|......|.|
T Consensus 431 Tii~Fk~g~~~~~~Y~~ 447 (463)
T TIGR00424 431 TILFFPKHSSRPIKYPS 447 (463)
T ss_pred eEEEEECCCCCceeCCC
Confidence 99999998655666764
No 54
>PLN02309 5'-adenylylsulfate reductase
Probab=99.58 E-value=1.4e-14 Score=130.29 Aligned_cols=91 Identities=18% Similarity=0.299 Sum_probs=76.5
Q ss_pred CeEEeCCHhHHHHHHH-ccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC--cEEEEEECC-CcHHHHH-HcCCCccc
Q 028819 100 NMREVASAQDLVESLW-HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYE-EHKSMCY-SLNVHVLP 174 (203)
Q Consensus 100 ~~~~i~s~~~~~~~l~-~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~--v~f~~Vd~d-~~~~l~~-~~~V~~~P 174 (203)
.+.++ +.++|.+.+. ...++++||+|||+||++|+.+.|.|+++++++.+ +.|++||++ ++..+++ +|+|.++|
T Consensus 346 ~Vv~L-t~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~P 424 (457)
T PLN02309 346 NVVAL-SRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFP 424 (457)
T ss_pred CcEEC-CHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceee
Confidence 44444 4456777664 46789999999999999999999999999999864 999999999 7888886 69999999
Q ss_pred EEEEEECCCeeEEEEec
Q 028819 175 FFRFYRGAHGRVCSFSC 191 (203)
Q Consensus 175 t~~~~~~g~~~v~~~~g 191 (203)
|+++|++|......|.|
T Consensus 425 Til~f~~g~~~~v~Y~~ 441 (457)
T PLN02309 425 TILLFPKNSSRPIKYPS 441 (457)
T ss_pred EEEEEeCCCCCeeecCC
Confidence 99999988756667875
No 55
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=4.3e-15 Score=133.39 Aligned_cols=91 Identities=22% Similarity=0.489 Sum_probs=78.5
Q ss_pred CeEEeCCHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCC----CcEEEEEECCCcHHHHHHcCCCcccE
Q 028819 100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYEEHKSMCYSLNVHVLPF 175 (203)
Q Consensus 100 ~~~~i~s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~----~v~f~~Vd~d~~~~l~~~~~V~~~Pt 175 (203)
.+.++ +.+.|.+.+ ..+..++|.||||||++|+++.|.+++.++... .+..++||++++..+|.+|+|.++||
T Consensus 26 ~Vl~L-t~dnf~~~i--~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPT 102 (493)
T KOG0190|consen 26 DVLVL-TKDNFKETI--NGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPT 102 (493)
T ss_pred ceEEE-ecccHHHHh--ccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCe
Confidence 44444 446688888 578899999999999999999999999988753 49999999999999999999999999
Q ss_pred EEEEECCCeeEEEEecCCc
Q 028819 176 FRFYRGAHGRVCSFSCTNA 194 (203)
Q Consensus 176 ~~~~~~g~~~v~~~~g~~~ 194 (203)
+.+|+||+ ....|.|.+.
T Consensus 103 lkiFrnG~-~~~~Y~G~r~ 120 (493)
T KOG0190|consen 103 LKIFRNGR-SAQDYNGPRE 120 (493)
T ss_pred EEEEecCC-cceeccCccc
Confidence 99999998 4788888664
No 56
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.55 E-value=3.3e-14 Score=127.10 Aligned_cols=87 Identities=21% Similarity=0.490 Sum_probs=75.4
Q ss_pred CHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCC----CcEEEEEECCCcHHHHHHcCCCcccEEEEEEC
Q 028819 106 SAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRG 181 (203)
Q Consensus 106 s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~----~v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~ 181 (203)
+.++|.+.+ .++++++|+|||+||++|+.+.|.+.++++.+. ++.|+.||+++++++|++++|.++||+++|++
T Consensus 7 ~~~~~~~~i--~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~ 84 (462)
T TIGR01130 7 TKDNFDDFI--KSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIFRN 84 (462)
T ss_pred CHHHHHHHH--hcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEEEeC
Confidence 456787777 467899999999999999999999999887653 39999999999999999999999999999999
Q ss_pred CCeeEEEEecCCc
Q 028819 182 AHGRVCSFSCTNA 194 (203)
Q Consensus 182 g~~~v~~~~g~~~ 194 (203)
|+..+..|.|...
T Consensus 85 g~~~~~~~~g~~~ 97 (462)
T TIGR01130 85 GEDSVSDYNGPRD 97 (462)
T ss_pred CccceeEecCCCC
Confidence 9832788888553
No 57
>PTZ00102 disulphide isomerase; Provisional
Probab=99.54 E-value=4.4e-14 Score=127.43 Aligned_cols=86 Identities=22% Similarity=0.482 Sum_probs=74.2
Q ss_pred CCHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhC----CCcEEEEEECCCcHHHHHHcCCCcccEEEEEE
Q 028819 105 ASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN----PDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 180 (203)
Q Consensus 105 ~s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~----~~v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~ 180 (203)
.+.++|...+ .+++.++|+|||+||++|+++.|.+.++++.+ +++.|+.||++++..+|++|+|.++||+++|+
T Consensus 37 l~~~~f~~~i--~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~ 114 (477)
T PTZ00102 37 LTDSTFDKFI--TENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIKFFN 114 (477)
T ss_pred cchhhHHHHH--hcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEEEEE
Confidence 3556777777 45779999999999999999999999988654 34999999999999999999999999999999
Q ss_pred CCCeeEEEEecCCc
Q 028819 181 GAHGRVCSFSCTNA 194 (203)
Q Consensus 181 ~g~~~v~~~~g~~~ 194 (203)
+|+ .+ .|.|...
T Consensus 115 ~g~-~~-~y~g~~~ 126 (477)
T PTZ00102 115 KGN-PV-NYSGGRT 126 (477)
T ss_pred CCc-eE-EecCCCC
Confidence 987 55 8888653
No 58
>PHA02125 thioredoxin-like protein
Probab=99.53 E-value=4.5e-14 Score=97.02 Aligned_cols=65 Identities=17% Similarity=0.363 Sum_probs=57.3
Q ss_pred EEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHHHHcCCCcccEEEEEECCCeeEEEEecCCccc
Q 028819 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATV 196 (203)
Q Consensus 123 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g~~~v~~~~g~~~~i 196 (203)
+++||++||++|+.+.|.++++. +.++.||.+++++++++|+|.++||++ +|+ .+.++.|.+.++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-----~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~-~~~~~~G~~~~~ 66 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-----YTYVDVDTDEGVELTAKHHIRSLPTLV---NTS-TLDRFTGVPRNV 66 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-----heEEeeeCCCCHHHHHHcCCceeCeEE---CCE-EEEEEeCCCCcH
Confidence 78999999999999999998763 568999999999999999999999998 566 788999987654
No 59
>PTZ00102 disulphide isomerase; Provisional
Probab=99.52 E-value=5.3e-14 Score=126.87 Aligned_cols=87 Identities=20% Similarity=0.385 Sum_probs=74.9
Q ss_pred HhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC---cEEEEEECCCcHHHHHHcCCCcccEEEEEECCC
Q 028819 107 AQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD---VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH 183 (203)
Q Consensus 107 ~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~---v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g~ 183 (203)
.++|.+.+. ..+++|+|+|||+||++|+.+.|.++++++.+.+ +.++.+|++.+...++.++|.++||+++|++|+
T Consensus 364 ~~~f~~~v~-~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~ 442 (477)
T PTZ00102 364 GNTFEEIVF-KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGE 442 (477)
T ss_pred ccchHHHHh-cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEEECCC
Confidence 466766654 5689999999999999999999999999988764 899999999999999999999999999999887
Q ss_pred eeEEEEecCCc
Q 028819 184 GRVCSFSCTNA 194 (203)
Q Consensus 184 ~~v~~~~g~~~ 194 (203)
.....+.|...
T Consensus 443 ~~~~~~~G~~~ 453 (477)
T PTZ00102 443 RTPIPYEGERT 453 (477)
T ss_pred cceeEecCcCC
Confidence 44457888544
No 60
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.52 E-value=1.2e-14 Score=122.36 Aligned_cols=84 Identities=20% Similarity=0.473 Sum_probs=72.3
Q ss_pred HHHHHHH-ccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC----cEEEEEECCCcHHHHHHcCCCcccEEEEEECCC
Q 028819 109 DLVESLW-HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD----VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH 183 (203)
Q Consensus 109 ~~~~~l~-~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~----v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g~ 183 (203)
++.+... ...+..++|+||||||++|+++.|.|+++.-+..+ +++.++|++..+.++.+++|+++||+.+|+++.
T Consensus 32 DLddkFkdnkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~ 111 (468)
T KOG4277|consen 32 DLDDKFKDNKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDH 111 (468)
T ss_pred hhhHHhhhcccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCe
Confidence 3333333 35678999999999999999999999999887765 899999999999999999999999999999876
Q ss_pred eeEEEEecCCc
Q 028819 184 GRVCSFSCTNA 194 (203)
Q Consensus 184 ~~v~~~~g~~~ 194 (203)
+..|.|.+.
T Consensus 112 --a~dYRG~R~ 120 (468)
T KOG4277|consen 112 --AIDYRGGRE 120 (468)
T ss_pred --eeecCCCcc
Confidence 777888665
No 61
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.52 E-value=4.4e-14 Score=105.30 Aligned_cols=72 Identities=22% Similarity=0.369 Sum_probs=56.9
Q ss_pred cCCCeEEEEEECCCChhhHHHHHHHHHHHHhCC-CcEEEEEECCCcH-HHHHHcCCCc--ccEEEEEE-CCCeeEEEE
Q 028819 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHK-SMCYSLNVHV--LPFFRFYR-GAHGRVCSF 189 (203)
Q Consensus 117 ~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~-~v~f~~Vd~d~~~-~l~~~~~V~~--~Pt~~~~~-~g~~~v~~~ 189 (203)
.++++|+|+|||+||++|+.+.|.+.+...... +..|+.||++... ...+.|++.+ +||+++|. +|+ .+.++
T Consensus 17 ~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk-~~~~~ 93 (117)
T cd02959 17 DSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGD-VHPEI 93 (117)
T ss_pred HcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCC-Cchhh
Confidence 578999999999999999999999998766432 3567777777654 4567899987 99999996 776 55533
No 62
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.51 E-value=6.2e-14 Score=104.18 Aligned_cols=83 Identities=11% Similarity=0.155 Sum_probs=68.2
Q ss_pred CCHhHHHHHHHccCCCeEEEEEEC--CCCh---hhHHHHHHHHHHHHhCCCcEEEEEECC-----CcHHHHHHcCCC--c
Q 028819 105 ASAQDLVESLWHAGDKLVVVDFFS--PGCG---GCKALHPKICQLAEMNPDVQFLQVNYE-----EHKSMCYSLNVH--V 172 (203)
Q Consensus 105 ~s~~~~~~~l~~~~~k~vvV~F~a--~WC~---~Ck~~~p~l~~la~~~~~v~f~~Vd~d-----~~~~l~~~~~V~--~ 172 (203)
.+.+.|.+.+ .+++.+||.||| |||+ +|+.+.|.+.+.+.. +.+++||++ ++.+||++|+|. +
T Consensus 6 L~~~nF~~~v--~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~---v~lakVd~~d~~~~~~~~L~~~y~I~~~g 80 (116)
T cd03007 6 LDTVTFYKVI--PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD---LLVAEVGIKDYGEKLNMELGERYKLDKES 80 (116)
T ss_pred CChhhHHHHH--hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc---eEEEEEecccccchhhHHHHHHhCCCcCC
Confidence 4556788877 567899999999 9999 888888877766643 899999994 578899999999 9
Q ss_pred ccEEEEEECCC-eeEEEEecC
Q 028819 173 LPFFRFYRGAH-GRVCSFSCT 192 (203)
Q Consensus 173 ~Pt~~~~~~g~-~~v~~~~g~ 192 (203)
+||+.+|++|+ .....|.|.
T Consensus 81 yPTl~lF~~g~~~~~~~Y~G~ 101 (116)
T cd03007 81 YPVIYLFHGGDFENPVPYSGA 101 (116)
T ss_pred CCEEEEEeCCCcCCCccCCCC
Confidence 99999999884 245678885
No 63
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.46 E-value=3.4e-13 Score=124.88 Aligned_cols=93 Identities=19% Similarity=0.301 Sum_probs=77.3
Q ss_pred CeEEeCCHhHHHHHHHc--cCCCeEEEEEECCCChhhHHHHHHH---HHHHHhCCCcEEEEEECCC----cHHHHHHcCC
Q 028819 100 NMREVASAQDLVESLWH--AGDKLVVVDFFSPGCGGCKALHPKI---CQLAEMNPDVQFLQVNYEE----HKSMCYSLNV 170 (203)
Q Consensus 100 ~~~~i~s~~~~~~~l~~--~~~k~vvV~F~a~WC~~Ck~~~p~l---~~la~~~~~v~f~~Vd~d~----~~~l~~~~~V 170 (203)
...++.+.+++.+.+.+ .++|+|+|+|||+||++|+.+++.+ .++.++++++.++++|+++ +.+++++|+|
T Consensus 453 ~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v 532 (571)
T PRK00293 453 NFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNV 532 (571)
T ss_pred CceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCC
Confidence 45678889999888863 3579999999999999999999875 6788888889999999975 4688999999
Q ss_pred CcccEEEEEE-CCCee--EEEEecCC
Q 028819 171 HVLPFFRFYR-GAHGR--VCSFSCTN 193 (203)
Q Consensus 171 ~~~Pt~~~~~-~g~~~--v~~~~g~~ 193 (203)
.++||+++|+ +|+ + +.++.|..
T Consensus 533 ~g~Pt~~~~~~~G~-~i~~~r~~G~~ 557 (571)
T PRK00293 533 LGLPTILFFDAQGQ-EIPDARVTGFM 557 (571)
T ss_pred CCCCEEEEECCCCC-CcccccccCCC
Confidence 9999999996 666 4 35677743
No 64
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.45 E-value=1.6e-13 Score=98.76 Aligned_cols=64 Identities=14% Similarity=0.211 Sum_probs=61.3
Q ss_pred CCeEEEEEECCCChhhHHHHHHHHHHHHhCCC-cEEEEEECCCcHHHHHHcCCC--cccEEEEEECC
Q 028819 119 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVH--VLPFFRFYRGA 182 (203)
Q Consensus 119 ~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~~l~~~~~V~--~~Pt~~~~~~g 182 (203)
++++++.|+++||++|+.+.|.++++++++.+ +.|+.||+++++.+++.+++. ++|++++++++
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~ 78 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLS 78 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecc
Confidence 68999999999999999999999999999976 999999999999999999999 99999999983
No 65
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.45 E-value=6.9e-13 Score=108.60 Aligned_cols=75 Identities=19% Similarity=0.317 Sum_probs=63.3
Q ss_pred CCeEEEEEEC---CCChhhHHHHHHHHHHHHhCCCc--EEEEEECCCcHHHHHHcCCCcccEEEEEECCCeeE-EEEecC
Q 028819 119 DKLVVVDFFS---PGCGGCKALHPKICQLAEMNPDV--QFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRV-CSFSCT 192 (203)
Q Consensus 119 ~k~vvV~F~a---~WC~~Ck~~~p~l~~la~~~~~v--~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g~~~v-~~~~g~ 192 (203)
+...++.|++ +||++|+.+.|.+++++++++++ .++.+|.+++++++++|+|.++||+++|++|+ .+ .++.|.
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~-~~~~~~~G~ 97 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGK-DGGIRYTGI 97 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCe-eeEEEEeec
Confidence 3455666888 99999999999999999999775 46666666999999999999999999999998 55 488886
Q ss_pred Cc
Q 028819 193 NA 194 (203)
Q Consensus 193 ~~ 194 (203)
..
T Consensus 98 ~~ 99 (215)
T TIGR02187 98 PA 99 (215)
T ss_pred CC
Confidence 44
No 66
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.43 E-value=1e-12 Score=90.67 Aligned_cols=66 Identities=20% Similarity=0.273 Sum_probs=58.0
Q ss_pred EEEEEECCCChhhHHHHHHHHHHHHhCCC-cEEEEEECCCcHHHHHHcCCCcccEEEEEECCCeeEEEEecC
Q 028819 122 VVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCT 192 (203)
Q Consensus 122 vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g~~~v~~~~g~ 192 (203)
.+..||++||++|+.+.|.++++++++++ +.+..||.++++++++++++.++||+++ +|+ ..+.|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~---~~~~G~ 68 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD---VEFIGA 68 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE---EEEecC
Confidence 46789999999999999999999998865 9999999999999999999999999986 664 256675
No 67
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.42 E-value=1.2e-12 Score=107.08 Aligned_cols=80 Identities=18% Similarity=0.220 Sum_probs=65.7
Q ss_pred HHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHHHHcCCCcccEEEEEECCCeeEEEEe
Q 028819 111 VESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFS 190 (203)
Q Consensus 111 ~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g~~~v~~~~ 190 (203)
.+.+....+..+++.||++||++|+.+.|.+++++.+++++.+..+|.+++++++++|+|.++||++++++|+ + +.
T Consensus 125 ~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~-~---~~ 200 (215)
T TIGR02187 125 VELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMSVPKIVINKGVE-E---FV 200 (215)
T ss_pred HHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCE-E---EE
Confidence 4444433333455559999999999999999999999888999999999999999999999999999997665 2 77
Q ss_pred cCCc
Q 028819 191 CTNA 194 (203)
Q Consensus 191 g~~~ 194 (203)
|...
T Consensus 201 G~~~ 204 (215)
T TIGR02187 201 GAYP 204 (215)
T ss_pred CCCC
Confidence 7554
No 68
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=3.3e-13 Score=121.39 Aligned_cols=84 Identities=27% Similarity=0.463 Sum_probs=68.1
Q ss_pred hHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC---cEEEEEECCCcHHHHHHcCCCcccEEEEEECCCe
Q 028819 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD---VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHG 184 (203)
Q Consensus 108 ~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~---v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g~~ 184 (203)
+.|++.+ ...+|-|+|.|||||||+|+++.|.+++|++.|.+ +.++++|.+.|.- ....|.++||+.+|+.|.+
T Consensus 374 knfd~iv-~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~--~~~~~~~fPTI~~~pag~k 450 (493)
T KOG0190|consen 374 KNFDDIV-LDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDV--PSLKVDGFPTILFFPAGHK 450 (493)
T ss_pred cCHHHHh-hccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccC--ccccccccceEEEecCCCC
Confidence 3455555 47899999999999999999999999999999865 9999999887653 3456788999999987763
Q ss_pred -eEEEEecCCc
Q 028819 185 -RVCSFSCTNA 194 (203)
Q Consensus 185 -~v~~~~g~~~ 194 (203)
.+..|.|.+.
T Consensus 451 ~~pv~y~g~R~ 461 (493)
T KOG0190|consen 451 SNPVIYNGDRT 461 (493)
T ss_pred CCCcccCCCcc
Confidence 4777777654
No 69
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.40 E-value=1.2e-12 Score=87.51 Aligned_cols=56 Identities=20% Similarity=0.360 Sum_probs=52.9
Q ss_pred EEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHHHHcCCCcccEEEE
Q 028819 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF 178 (203)
Q Consensus 123 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~ 178 (203)
++.|+++||++|+.+.+.++++++.++++.|..+|.++++++++++++.++||+++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 67899999999999999999999988889999999999999999999999999865
No 70
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.39 E-value=1.5e-12 Score=89.70 Aligned_cols=62 Identities=15% Similarity=0.243 Sum_probs=52.2
Q ss_pred EEEEECCCChhhHHHHHHHHHHHHhCCC-cEEEEEECCCcHHHHHHcCCCcccEEEEEECCCeeEEEEecC
Q 028819 123 VVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCT 192 (203)
Q Consensus 123 vV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g~~~v~~~~g~ 192 (203)
.|+||++||++|+.+.|.+++++++++. +.|+.|| +.+.+.+|++.++||+++ ||+ .+ +.|.
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~-~~--~~G~ 64 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGE-LV--IMGK 64 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCE-EE--EEec
Confidence 3889999999999999999999999875 8888887 244478899999999999 776 44 6664
No 71
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.39 E-value=2.8e-12 Score=95.92 Aligned_cols=75 Identities=16% Similarity=0.241 Sum_probs=60.5
Q ss_pred CCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEE-----------------------CCCcHHHHHHcCCCccc
Q 028819 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVN-----------------------YEEHKSMCYSLNVHVLP 174 (203)
Q Consensus 118 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd-----------------------~d~~~~l~~~~~V~~~P 174 (203)
.+++++|+||++||++|+.+.|.++++.+++ ++.++.|+ +|.+..+++.|++.++|
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P 102 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQG-RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVP 102 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCCC
Confidence 5789999999999999999999999999887 46666665 34556788899999999
Q ss_pred EEEEE-ECCCeeEEEEecCCc
Q 028819 175 FFRFY-RGAHGRVCSFSCTNA 194 (203)
Q Consensus 175 t~~~~-~~g~~~v~~~~g~~~ 194 (203)
+.+++ ++|+ .+..+.|..+
T Consensus 103 ~~~~ld~~G~-v~~~~~G~~~ 122 (127)
T cd03010 103 ETFLIDGDGI-IRYKHVGPLT 122 (127)
T ss_pred eEEEECCCce-EEEEEeccCC
Confidence 66666 4676 7778888543
No 72
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.39 E-value=2.9e-12 Score=99.04 Aligned_cols=73 Identities=14% Similarity=0.257 Sum_probs=56.8
Q ss_pred CCCeEEEEEECCCChhhHHHHHHHHHHHHhCC---------CcEEEEEECCCc-------------------------HH
Q 028819 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---------DVQFLQVNYEEH-------------------------KS 163 (203)
Q Consensus 118 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~---------~v~f~~Vd~d~~-------------------------~~ 163 (203)
.+|+++|+|||+||++|+.+.|.+.++.+++. ++.++.|+.|+. ..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 58999999999999999999999999775432 478888886632 24
Q ss_pred HHHHcCCCcccEEEEEECCCeeEEEEec
Q 028819 164 MCYSLNVHVLPFFRFYRGAHGRVCSFSC 191 (203)
Q Consensus 164 l~~~~~V~~~Pt~~~~~~g~~~v~~~~g 191 (203)
+++.|+|.++||.+++.. +|++..-.|
T Consensus 104 l~~~y~v~~iPt~vlId~-~G~Vv~~~~ 130 (146)
T cd03008 104 LEAQFSVEELPTVVVLKP-DGDVLAANA 130 (146)
T ss_pred HHHHcCCCCCCEEEEECC-CCcEEeeCh
Confidence 677899999999999953 345654443
No 73
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.36 E-value=8.1e-12 Score=94.07 Aligned_cols=82 Identities=12% Similarity=0.120 Sum_probs=61.5
Q ss_pred hHHHHHHHccCCCeEEEEEECCCChhhHHHHHHH---HHHHHhC-CCcEEEEEECCCcHHHHHH--------cCCCcccE
Q 028819 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKI---CQLAEMN-PDVQFLQVNYEEHKSMCYS--------LNVHVLPF 175 (203)
Q Consensus 108 ~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l---~~la~~~-~~v~f~~Vd~d~~~~l~~~--------~~V~~~Pt 175 (203)
+.+..+. +++|+|+|+|+++||++|+.|.+.. .++++.. .++.++++|.++.+++++. |++.++|+
T Consensus 6 eal~~Ak--~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt 83 (124)
T cd02955 6 EAFEKAR--REDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPL 83 (124)
T ss_pred HHHHHHH--HcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCE
Confidence 4444444 6799999999999999999998743 2555553 4689999999988777653 58999999
Q ss_pred EEEEE-CCCeeEEEEecC
Q 028819 176 FRFYR-GAHGRVCSFSCT 192 (203)
Q Consensus 176 ~~~~~-~g~~~v~~~~g~ 192 (203)
++++. +|+ .+....+-
T Consensus 84 ~vfl~~~G~-~~~~~~~~ 100 (124)
T cd02955 84 NVFLTPDLK-PFFGGTYF 100 (124)
T ss_pred EEEECCCCC-EEeeeeec
Confidence 99996 455 66655443
No 74
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.36 E-value=7.3e-12 Score=88.96 Aligned_cols=64 Identities=23% Similarity=0.414 Sum_probs=53.2
Q ss_pred CCeEEEEEECCCChhhHHHHHHHHHHHHhCC---CcEEEEEECCCc-------------------------HHHHHHcCC
Q 028819 119 DKLVVVDFFSPGCGGCKALHPKICQLAEMNP---DVQFLQVNYEEH-------------------------KSMCYSLNV 170 (203)
Q Consensus 119 ~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~---~v~f~~Vd~d~~-------------------------~~l~~~~~V 170 (203)
||+++|+||++||++|+...|.+.++.++++ ++.|+.|..|+. ..+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 6899999999999999999999999999998 499999987642 247788999
Q ss_pred CcccEEEEEECC
Q 028819 171 HVLPFFRFYRGA 182 (203)
Q Consensus 171 ~~~Pt~~~~~~g 182 (203)
.++|+++++...
T Consensus 81 ~~iP~~~lld~~ 92 (95)
T PF13905_consen 81 NGIPTLVLLDPD 92 (95)
T ss_dssp TSSSEEEEEETT
T ss_pred CcCCEEEEECCC
Confidence 999999999743
No 75
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.34 E-value=6.2e-12 Score=94.64 Aligned_cols=66 Identities=15% Similarity=0.361 Sum_probs=54.5
Q ss_pred CCCeEEEEEECCCChhhHHHHHHHHHHHHhCC----CcEEEEEECCCc------------------------HHHHHHcC
Q 028819 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYEEH------------------------KSMCYSLN 169 (203)
Q Consensus 118 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~----~v~f~~Vd~d~~------------------------~~l~~~~~ 169 (203)
.++++||+||++||++|+.+.|.+.++.+++. ++.++.|+.|.. ..+++.|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 57899999999999999999999998877653 477777776643 35778899
Q ss_pred CCcccEEEEEE-CCC
Q 028819 170 VHVLPFFRFYR-GAH 183 (203)
Q Consensus 170 V~~~Pt~~~~~-~g~ 183 (203)
|.++|+++++. +|+
T Consensus 97 v~~~P~~~lid~~G~ 111 (131)
T cd03009 97 IEGIPTLIILDADGE 111 (131)
T ss_pred CCCCCEEEEECCCCC
Confidence 99999999996 454
No 76
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.34 E-value=1.4e-11 Score=104.51 Aligned_cols=75 Identities=13% Similarity=0.209 Sum_probs=61.1
Q ss_pred ccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCC-----------cHHHHHHcCCCcccEEEEEEC-CC
Q 028819 116 HAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-----------HKSMCYSLNVHVLPFFRFYRG-AH 183 (203)
Q Consensus 116 ~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~-----------~~~l~~~~~V~~~Pt~~~~~~-g~ 183 (203)
.-.++++||+||++||++|+.+.|.+.+++++|+ +.++.|++|. +..++++|+|.++||++++++ |+
T Consensus 163 ~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~ 241 (271)
T TIGR02740 163 DLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPN 241 (271)
T ss_pred HhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCC
Confidence 3458899999999999999999999999999985 6677777654 356889999999999999986 44
Q ss_pred eeEEE-EecC
Q 028819 184 GRVCS-FSCT 192 (203)
Q Consensus 184 ~~v~~-~~g~ 192 (203)
.+.. ..|.
T Consensus 242 -~v~~v~~G~ 250 (271)
T TIGR02740 242 -QFTPIGFGV 250 (271)
T ss_pred -EEEEEEeCC
Confidence 5543 3353
No 77
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.33 E-value=7.5e-12 Score=94.61 Aligned_cols=73 Identities=19% Similarity=0.329 Sum_probs=56.7
Q ss_pred CCCeEEEEEECCCChhhHHHHHHHHHHHHhCC----CcEEEEEECCCc-------------------------HHHHHHc
Q 028819 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----DVQFLQVNYEEH-------------------------KSMCYSL 168 (203)
Q Consensus 118 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~----~v~f~~Vd~d~~-------------------------~~l~~~~ 168 (203)
.+|+++|+||++||++|+.+.|.+.++++++. ++.++.|+.|.. ..+++.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 57999999999999999999999999887654 477777776643 2456779
Q ss_pred CCCcccEEEEEECCCeeEEEEec
Q 028819 169 NVHVLPFFRFYRGAHGRVCSFSC 191 (203)
Q Consensus 169 ~V~~~Pt~~~~~~g~~~v~~~~g 191 (203)
+|.++|+++++..+ |++....+
T Consensus 96 ~v~~iPt~~lid~~-G~iv~~~~ 117 (132)
T cd02964 96 KVEGIPTLVVLKPD-GDVVTTNA 117 (132)
T ss_pred CCCCCCEEEEECCC-CCEEchhH
Confidence 99999999999533 24554433
No 78
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.33 E-value=3.9e-12 Score=113.73 Aligned_cols=83 Identities=24% Similarity=0.426 Sum_probs=68.4
Q ss_pred HhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC----cEEEEEECCCcHHHHHHcCCCcccEEEEEECC
Q 028819 107 AQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD----VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGA 182 (203)
Q Consensus 107 ~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~----v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g 182 (203)
.++|.+.+. ..+++++|+||++||++|+.+.|.++++++.+.+ +.|+.+|++.+. +.. ++|.++||+++|++|
T Consensus 353 ~~~f~~~v~-~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~~Pt~~~~~~~ 429 (462)
T TIGR01130 353 GKNFDEIVL-DETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEGFPTIKFVPAG 429 (462)
T ss_pred CcCHHHHhc-cCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccccCEEEEEeCC
Confidence 456666664 5689999999999999999999999999998764 899999998764 334 999999999999988
Q ss_pred Ce-eEEEEecC
Q 028819 183 HG-RVCSFSCT 192 (203)
Q Consensus 183 ~~-~v~~~~g~ 192 (203)
+. ....+.|.
T Consensus 430 ~~~~~~~~~g~ 440 (462)
T TIGR01130 430 KKSEPVPYDGD 440 (462)
T ss_pred CCcCceEecCc
Confidence 73 34667773
No 79
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.32 E-value=3.1e-12 Score=107.91 Aligned_cols=83 Identities=17% Similarity=0.337 Sum_probs=71.8
Q ss_pred HHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHH----hCCC--cEEEEEECCCcHHHHHHcCCCcccEEEEEECCC
Q 028819 110 LVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAE----MNPD--VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH 183 (203)
Q Consensus 110 ~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~----~~~~--v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g~ 183 (203)
+...+ ....+|+|.|||+||+..+.++|.+++.+. ++|+ +.++.|||+.+..++.+|.|..+||+-+|++|.
T Consensus 6 ~~~il--~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG~ 83 (375)
T KOG0912|consen 6 IDSIL--DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNGE 83 (375)
T ss_pred HHHhh--ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeeccc
Confidence 44444 458899999999999999999999998765 5674 999999999999999999999999999999998
Q ss_pred eeEEEEecCCc
Q 028819 184 GRVCSFSCTNA 194 (203)
Q Consensus 184 ~~v~~~~g~~~ 194 (203)
..-..|.|.++
T Consensus 84 ~~~rEYRg~Rs 94 (375)
T KOG0912|consen 84 MMKREYRGQRS 94 (375)
T ss_pred hhhhhhccchh
Confidence 44447888776
No 80
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.31 E-value=5.2e-12 Score=92.29 Aligned_cols=77 Identities=25% Similarity=0.341 Sum_probs=57.6
Q ss_pred cCCCeEEEEEECCCChhhHHHHHHHHH---HHHhCC-CcEEEEEECCCc--------------------HHHHHHcCCCc
Q 028819 117 AGDKLVVVDFFSPGCGGCKALHPKICQ---LAEMNP-DVQFLQVNYEEH--------------------KSMCYSLNVHV 172 (203)
Q Consensus 117 ~~~k~vvV~F~a~WC~~Ck~~~p~l~~---la~~~~-~v~f~~Vd~d~~--------------------~~l~~~~~V~~ 172 (203)
.++++++++||++||++|+.+.+.+.+ +...+. ++.++.++++.. .++++.|+|.+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 578999999999999999999999885 444443 488888887643 35889999999
Q ss_pred ccEEEEEE-CCCeeEEEEecCCc
Q 028819 173 LPFFRFYR-GAHGRVCSFSCTNA 194 (203)
Q Consensus 173 ~Pt~~~~~-~g~~~v~~~~g~~~ 194 (203)
+||++++. +|+ .+..+.|..+
T Consensus 83 tPt~~~~d~~G~-~v~~~~G~~~ 104 (112)
T PF13098_consen 83 TPTIVFLDKDGK-IVYRIPGYLS 104 (112)
T ss_dssp SSEEEECTTTSC-EEEEEESS--
T ss_pred cCEEEEEcCCCC-EEEEecCCCC
Confidence 99999995 566 7878888654
No 81
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.31 E-value=2.2e-11 Score=86.49 Aligned_cols=70 Identities=10% Similarity=0.185 Sum_probs=61.5
Q ss_pred CCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHHHHcCCCcccEEEEEECCCeeEEEEecC
Q 028819 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCT 192 (203)
Q Consensus 118 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g~~~v~~~~g~ 192 (203)
.+..-+..|+++||++|..+.+.++++++.++++.+..+|.++.++++++|+|.++||+++ ||+ .+. .|.
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~-~~~--~G~ 80 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGE-LFG--FGR 80 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCE-EEE--eCC
Confidence 4556788899999999999999999999999999999999999999999999999999974 775 333 464
No 82
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.29 E-value=2.5e-11 Score=87.15 Aligned_cols=73 Identities=22% Similarity=0.344 Sum_probs=63.3
Q ss_pred CCCeEEEEEECCCChhhHHHHHHHHHHHHhC--CCcEEEEEECCCc-----------------------HHHHHHcCCCc
Q 028819 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMN--PDVQFLQVNYEEH-----------------------KSMCYSLNVHV 172 (203)
Q Consensus 118 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~--~~v~f~~Vd~d~~-----------------------~~l~~~~~V~~ 172 (203)
.+++++|+||++||++|+...+.+.++.+++ +++.++.|+.|.. ..+.+.|++.+
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 4789999999999999999999999999998 5699999999875 77899999999
Q ss_pred ccEEEEEE-CCCeeEEEEec
Q 028819 173 LPFFRFYR-GAHGRVCSFSC 191 (203)
Q Consensus 173 ~Pt~~~~~-~g~~~v~~~~g 191 (203)
+|+++++. +|+ .+..+.|
T Consensus 98 ~P~~~l~d~~g~-v~~~~~g 116 (116)
T cd02966 98 LPTTFLIDRDGR-IRARHVG 116 (116)
T ss_pred cceEEEECCCCc-EEEEecC
Confidence 99999995 454 6666554
No 83
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.29 E-value=1.6e-11 Score=111.98 Aligned_cols=77 Identities=16% Similarity=0.244 Sum_probs=63.5
Q ss_pred cCCCeEEEEEECCCChhhHHHHHHHHHHHHhCC--CcEEEEEE----------------------------CCCcHHHHH
Q 028819 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVN----------------------------YEEHKSMCY 166 (203)
Q Consensus 117 ~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd----------------------------~d~~~~l~~ 166 (203)
+++|+|||+|||+||++|+.+.|.+++++++++ ++.|+.|. .|.+..+++
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak 133 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQ 133 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHH
Confidence 478999999999999999999999999999876 46666553 345667889
Q ss_pred HcCCCcccEEEEE-ECCCeeEEEEecCCc
Q 028819 167 SLNVHVLPFFRFY-RGAHGRVCSFSCTNA 194 (203)
Q Consensus 167 ~~~V~~~Pt~~~~-~~g~~~v~~~~g~~~ 194 (203)
.|+|.++||++++ ++|+ .+..+.|...
T Consensus 134 ~fgV~giPTt~IIDkdGk-IV~~~~G~~~ 161 (521)
T PRK14018 134 SLNISVYPSWAIIGKDGD-VQRIVKGSIS 161 (521)
T ss_pred HcCCCCcCeEEEEcCCCe-EEEEEeCCCC
Confidence 9999999999766 5676 7888888554
No 84
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.28 E-value=2.9e-11 Score=96.77 Aligned_cols=74 Identities=18% Similarity=0.270 Sum_probs=58.5
Q ss_pred CCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcH-----------------------HHHHHcCCCccc
Q 028819 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK-----------------------SMCYSLNVHVLP 174 (203)
Q Consensus 118 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~-----------------------~l~~~~~V~~~P 174 (203)
.+|+++|+||++||++|+.+.|.+.++.+. ++.++.|+.++.. .+++.|+|.++|
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P 144 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP 144 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCC
Confidence 689999999999999999999999999763 6888888865432 244578999999
Q ss_pred EEEEEE-CCCeeEEEEecCCc
Q 028819 175 FFRFYR-GAHGRVCSFSCTNA 194 (203)
Q Consensus 175 t~~~~~-~g~~~v~~~~g~~~ 194 (203)
+.+++. +|+ .+..+.|...
T Consensus 145 ~t~vid~~G~-i~~~~~G~~~ 164 (185)
T PRK15412 145 ETFLIDGNGI-IRYRHAGDLN 164 (185)
T ss_pred eEEEECCCce-EEEEEecCCC
Confidence 777664 666 6777887543
No 85
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.28 E-value=2.8e-11 Score=94.31 Aligned_cols=75 Identities=11% Similarity=0.163 Sum_probs=55.7
Q ss_pred CCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCc------------HHHH-HHc---CCCcccEEEEEEC
Q 028819 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH------------KSMC-YSL---NVHVLPFFRFYRG 181 (203)
Q Consensus 118 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~------------~~l~-~~~---~V~~~Pt~~~~~~ 181 (203)
.++..+|+|||+||++|+++.|.++++++++ ++.++.|+.|+. .... ..+ ++.++||.+++..
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~-~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~ 127 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQF-GLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNV 127 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHc-CCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeC
Confidence 3566799999999999999999999999998 566766776642 2333 345 8899999999964
Q ss_pred -CCeeEEEEecCC
Q 028819 182 -AHGRVCSFSCTN 193 (203)
Q Consensus 182 -g~~~v~~~~g~~ 193 (203)
|+..+....|..
T Consensus 128 ~G~~i~~~~~G~~ 140 (153)
T TIGR02738 128 NTRKAYPVLQGAV 140 (153)
T ss_pred CCCEEEEEeeccc
Confidence 442344567754
No 86
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=8.6e-12 Score=110.37 Aligned_cols=76 Identities=28% Similarity=0.566 Sum_probs=70.0
Q ss_pred cCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC-cEEEEEECCCcHHHHHHcCCCcccEEEEEECCCeeEEEEecCC
Q 028819 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTN 193 (203)
Q Consensus 117 ~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g~~~v~~~~g~~ 193 (203)
..+++++|+||++||++|+.+.|.+.+++..+.+ +.+..||++++.++|++|+|.++||+.+|..| ..+..+.|.+
T Consensus 45 ~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~-~~~~~~~~~~ 121 (383)
T KOG0191|consen 45 KDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPG-KKPIDYSGPR 121 (383)
T ss_pred ccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCC-CceeeccCcc
Confidence 5788999999999999999999999999999887 99999999999999999999999999999988 3677787743
No 87
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.21 E-value=7.8e-11 Score=93.22 Aligned_cols=74 Identities=19% Similarity=0.290 Sum_probs=57.5
Q ss_pred cCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEEC-----------------------CCcHHHHHHcCCCcc
Q 028819 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNY-----------------------EEHKSMCYSLNVHVL 173 (203)
Q Consensus 117 ~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~-----------------------d~~~~l~~~~~V~~~ 173 (203)
..+++++|+||++||++|+.+.|.++++.+. ++.++.|+. |.+..+.+.|++.++
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~ 138 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGA 138 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeC
Confidence 3689999999999999999999999999764 466666664 333456778999999
Q ss_pred cEEEEE-ECCCeeEEEEecCC
Q 028819 174 PFFRFY-RGAHGRVCSFSCTN 193 (203)
Q Consensus 174 Pt~~~~-~~g~~~v~~~~g~~ 193 (203)
|+.+++ ++|+ .+..+.|..
T Consensus 139 P~~~~id~~G~-i~~~~~G~~ 158 (173)
T TIGR00385 139 PETFLVDGNGV-ILYRHAGPL 158 (173)
T ss_pred CeEEEEcCCce-EEEEEeccC
Confidence 976666 5676 777788843
No 88
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.19 E-value=2e-10 Score=86.06 Aligned_cols=73 Identities=15% Similarity=0.217 Sum_probs=59.1
Q ss_pred CCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC--cEEEEEECC---------------------------CcHHHHHHc
Q 028819 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYE---------------------------EHKSMCYSL 168 (203)
Q Consensus 118 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~--v~f~~Vd~d---------------------------~~~~l~~~~ 168 (203)
.++++||+||++||++|+...|.++++.+++.+ +.++.|+.+ ....+.+.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 578999999999999999999999999999974 778777531 233567789
Q ss_pred CCCcccEEEEEE-CCCeeEEEEec
Q 028819 169 NVHVLPFFRFYR-GAHGRVCSFSC 191 (203)
Q Consensus 169 ~V~~~Pt~~~~~-~g~~~v~~~~g 191 (203)
++.++|+.+++. +|+ .+..+.|
T Consensus 102 ~v~~~P~~~vid~~G~-v~~~~~G 124 (126)
T cd03012 102 GNQYWPALYLIDPTGN-VRHVHFG 124 (126)
T ss_pred CCCcCCeEEEECCCCc-EEEEEec
Confidence 999999999995 555 6666665
No 89
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.18 E-value=1.2e-10 Score=86.35 Aligned_cols=75 Identities=21% Similarity=0.268 Sum_probs=58.7
Q ss_pred CCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEE---------------------CCCcHHHHHHcCCCcccEE
Q 028819 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVN---------------------YEEHKSMCYSLNVHVLPFF 176 (203)
Q Consensus 118 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd---------------------~d~~~~l~~~~~V~~~Pt~ 176 (203)
.+++++|+||++||++|+.+.|.+.++++++. +..+.+| .|.+..+++.|+|.++|++
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~ 97 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPAI 97 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccEE
Confidence 46899999999999999999999999988743 2222221 1345679999999999999
Q ss_pred EEEECCCeeEEEEecCCc
Q 028819 177 RFYRGAHGRVCSFSCTNA 194 (203)
Q Consensus 177 ~~~~~g~~~v~~~~g~~~ 194 (203)
+++.+++ .+..+.|..+
T Consensus 98 ~vid~~g-i~~~~~g~~~ 114 (123)
T cd03011 98 VIVDPGG-IVFVTTGVTS 114 (123)
T ss_pred EEEcCCC-eEEEEeccCC
Confidence 9998776 7777887443
No 90
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.15 E-value=1.4e-10 Score=114.26 Aligned_cols=75 Identities=20% Similarity=0.342 Sum_probs=62.8
Q ss_pred CCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC--cEEEEEEC---------------------------CCcHHHHHHc
Q 028819 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNY---------------------------EEHKSMCYSL 168 (203)
Q Consensus 118 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~--v~f~~Vd~---------------------------d~~~~l~~~~ 168 (203)
.+|+|||+|||+||++|+.+.|.+++++++|++ +.++.|.. |....+.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 589999999999999999999999999999975 77777742 2244577889
Q ss_pred CCCcccEEEEE-ECCCeeEEEEecCC
Q 028819 169 NVHVLPFFRFY-RGAHGRVCSFSCTN 193 (203)
Q Consensus 169 ~V~~~Pt~~~~-~~g~~~v~~~~g~~ 193 (203)
+|.++|+++++ ++|+ .+.++.|..
T Consensus 499 ~V~~iPt~ilid~~G~-iv~~~~G~~ 523 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGK-LIAQLSGEG 523 (1057)
T ss_pred CCCccceEEEECCCCe-EEEEEeccc
Confidence 99999999999 5777 777888854
No 91
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.15 E-value=3.6e-10 Score=88.55 Aligned_cols=76 Identities=20% Similarity=0.276 Sum_probs=62.9
Q ss_pred CCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC--cEEEEEECCC----------------------cHHHHHHcCCCcc
Q 028819 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEE----------------------HKSMCYSLNVHVL 173 (203)
Q Consensus 118 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~--v~f~~Vd~d~----------------------~~~l~~~~~V~~~ 173 (203)
.+++++|+||++||++|+...|.+.++++++++ +.++.|++|. +..+++.|+|..+
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 578999999999999999999999999999864 8889898753 3567899999999
Q ss_pred cEEEEEE-CCCeeEEEEecCCc
Q 028819 174 PFFRFYR-GAHGRVCSFSCTNA 194 (203)
Q Consensus 174 Pt~~~~~-~g~~~v~~~~g~~~ 194 (203)
|+++++. +|+ .+..+.|...
T Consensus 140 P~~~lid~~g~-i~~~~~g~~~ 160 (173)
T PRK03147 140 PTTFLIDKDGK-VVKVITGEMT 160 (173)
T ss_pred CeEEEECCCCc-EEEEEeCCCC
Confidence 9998886 444 5556677544
No 92
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.12 E-value=1.3e-10 Score=84.91 Aligned_cols=63 Identities=25% Similarity=0.452 Sum_probs=46.3
Q ss_pred CCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC-cEEEEEECC---Cc-----------------HHHHHHcCCCcccEE
Q 028819 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYE---EH-----------------KSMCYSLNVHVLPFF 176 (203)
Q Consensus 118 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d---~~-----------------~~l~~~~~V~~~Pt~ 176 (203)
++++++|+||++||++|+.+.|.++++++++.+ +.++.+.-+ +. ..+.+.|++..+|+.
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~ 99 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYA 99 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeE
Confidence 378999999999999999999999999888754 666655211 11 234555667777777
Q ss_pred EEEE
Q 028819 177 RFYR 180 (203)
Q Consensus 177 ~~~~ 180 (203)
+++.
T Consensus 100 ~vid 103 (114)
T cd02967 100 VLLD 103 (114)
T ss_pred EEEC
Confidence 6664
No 93
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.12 E-value=3.7e-10 Score=89.78 Aligned_cols=97 Identities=26% Similarity=0.402 Sum_probs=88.3
Q ss_pred hhhcCCCCeEEeCCHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHHHHcCCCc
Q 028819 93 WEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHV 172 (203)
Q Consensus 93 ~~~~~~~~~~~i~s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~V~~ 172 (203)
|.......+.+|.++.+|.+... ....||++||-+.-..|+.|...++.+|+.+.+.+|++||.+..|-++.+++|..
T Consensus 60 ~~~~GhG~y~ev~~Ekdf~~~~~--kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL~IkV 137 (211)
T KOG1672|consen 60 WLSKGHGEYEEVASEKDFFEEVK--KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKLNIKV 137 (211)
T ss_pred HHHcCCceEEEeccHHHHHHHhh--cCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCceeeeeeeeeE
Confidence 45557778999999999999984 4567999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEECCCeeEEEEecC
Q 028819 173 LPFFRFYRGAHGRVCSFSCT 192 (203)
Q Consensus 173 ~Pt~~~~~~g~~~v~~~~g~ 192 (203)
+|++.+|++|+ .+..+.|-
T Consensus 138 LP~v~l~k~g~-~~D~iVGF 156 (211)
T KOG1672|consen 138 LPTVALFKNGK-TVDYVVGF 156 (211)
T ss_pred eeeEEEEEcCE-EEEEEeeH
Confidence 99999999998 77777773
No 94
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.09 E-value=2.5e-10 Score=104.05 Aligned_cols=89 Identities=21% Similarity=0.321 Sum_probs=72.6
Q ss_pred EEeCCHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHH---HHHHhCCCcEEEEEECCC----cHHHHHHcCCCccc
Q 028819 102 REVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKIC---QLAEMNPDVQFLQVNYEE----HKSMCYSLNVHVLP 174 (203)
Q Consensus 102 ~~i~s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~---~la~~~~~v~f~~Vd~d~----~~~l~~~~~V~~~P 174 (203)
..+.+..++++.+.++.+|+|+|||||+||-.||.+++..- +.+.+.+|+..+++|+++ +.++-++||+-++|
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P 536 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVP 536 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCC
Confidence 45677779999998777789999999999999999998763 666778899999999975 34577899999999
Q ss_pred EEEEEE-CCCeeEEEEec
Q 028819 175 FFRFYR-GAHGRVCSFSC 191 (203)
Q Consensus 175 t~~~~~-~g~~~v~~~~g 191 (203)
++++|. +|+ +.....|
T Consensus 537 ~~~ff~~~g~-e~~~l~g 553 (569)
T COG4232 537 TYLFFGPQGS-EPEILTG 553 (569)
T ss_pred EEEEECCCCC-cCcCCcc
Confidence 999997 555 4443444
No 95
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=99.06 E-value=7.1e-10 Score=93.62 Aligned_cols=95 Identities=18% Similarity=0.369 Sum_probs=76.1
Q ss_pred CCeEEeCCHhHHHHHHHc-cCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHHHHcCCCcccEEE
Q 028819 99 PNMREVASAQDLVESLWH-AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 177 (203)
Q Consensus 99 ~~~~~i~s~~~~~~~l~~-~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~V~~~Pt~~ 177 (203)
..+.+|.+.++|.+.+.. ..+..|||+||-+.++.|..+...|..||.+|+.++|++|..+..+ +..+|.+..+||++
T Consensus 125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-~~~~f~~~~LPtll 203 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-ASENFPDKNLPTLL 203 (265)
T ss_dssp -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-TTTTS-TTC-SEEE
T ss_pred ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-cccCCcccCCCEEE
Confidence 367889999999998863 2356899999999999999999999999999999999999987665 67889999999999
Q ss_pred EEECCCeeEEEEecCCcc
Q 028819 178 FYRGAHGRVCSFSCTNAT 195 (203)
Q Consensus 178 ~~~~g~~~v~~~~g~~~~ 195 (203)
+|++|+ .+..|.|-...
T Consensus 204 vYk~G~-l~~~~V~l~~~ 220 (265)
T PF02114_consen 204 VYKNGD-LIGNFVGLTDL 220 (265)
T ss_dssp EEETTE-EEEEECTGGGC
T ss_pred EEECCE-EEEeEEehHHh
Confidence 999998 88888885443
No 96
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.04 E-value=1.6e-09 Score=82.81 Aligned_cols=78 Identities=21% Similarity=0.313 Sum_probs=62.8
Q ss_pred cCCCeEEEEEECC-CChhhHHHHHHHHHHHHhCC--CcEEEEEECCC---------------------cHHHHHHcCCC-
Q 028819 117 AGDKLVVVDFFSP-GCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------HKSMCYSLNVH- 171 (203)
Q Consensus 117 ~~~k~vvV~F~a~-WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d~---------------------~~~l~~~~~V~- 171 (203)
-.+|++||+||++ ||++|+...|.+.++.+.|. ++.++.|..+. ...+.+.|++.
T Consensus 26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 105 (146)
T PF08534_consen 26 FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTI 105 (146)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEE
T ss_pred hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcc
Confidence 3689999999999 99999999999999988754 48888777542 34688899988
Q ss_pred --------cccEEEEEE-CCCeeEEEEecCCcc
Q 028819 172 --------VLPFFRFYR-GAHGRVCSFSCTNAT 195 (203)
Q Consensus 172 --------~~Pt~~~~~-~g~~~v~~~~g~~~~ 195 (203)
.+|+++++. +|+ .+....|.+.+
T Consensus 106 ~~~~~~~~~~P~~~lId~~G~-V~~~~~g~~~~ 137 (146)
T PF08534_consen 106 MEDPGNGFGIPTTFLIDKDGK-VVYRHVGPDPD 137 (146)
T ss_dssp ECCTTTTSSSSEEEEEETTSB-EEEEEESSBTT
T ss_pred ccccccCCeecEEEEEECCCE-EEEEEeCCCCC
Confidence 999988775 554 77777777664
No 97
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.04 E-value=7.1e-10 Score=78.65 Aligned_cols=72 Identities=28% Similarity=0.497 Sum_probs=64.5
Q ss_pred CCeEEEEEECCCChhhHHHHHHHHHHHHhCCC-cEEEEEECC-CcHHHHHHcC--CCcccEEEEEECCCeeEEEEec
Q 028819 119 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYE-EHKSMCYSLN--VHVLPFFRFYRGAHGRVCSFSC 191 (203)
Q Consensus 119 ~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d-~~~~l~~~~~--V~~~Pt~~~~~~g~~~v~~~~g 191 (203)
+++++++||++||++|+.+.|.+.++++++.+ +.+..+|.. ..+.+...++ +..+|+++++.+|+. +..+.+
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~ 107 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKE-VDRLVG 107 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcch-hhhhhh
Confidence 78999999999999999999999999999985 999999996 7889999999 999999999999884 555544
No 98
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.04 E-value=6.1e-10 Score=77.51 Aligned_cols=63 Identities=24% Similarity=0.386 Sum_probs=47.3
Q ss_pred cCCCeEEEEEECCCChhhHHHHHHH---HHHHH-hCCCcEEEEEECCCcHHHHHHcCCCcccEEEEEE
Q 028819 117 AGDKLVVVDFFSPGCGGCKALHPKI---CQLAE-MNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 180 (203)
Q Consensus 117 ~~~k~vvV~F~a~WC~~Ck~~~p~l---~~la~-~~~~v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~ 180 (203)
+.+|+++|+|+++||++|+.+...+ .++.+ -..++.++.||.++........+ .++|+++++.
T Consensus 15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ld 81 (82)
T PF13899_consen 15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR-QGYPTFFFLD 81 (82)
T ss_dssp HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH-CSSSEEEEEE
T ss_pred HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC-ccCCEEEEeC
Confidence 5799999999999999999999766 34433 12458999999987554332222 6799999985
No 99
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.03 E-value=7.6e-11 Score=106.65 Aligned_cols=78 Identities=21% Similarity=0.468 Sum_probs=65.9
Q ss_pred eCCHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC----cEEEEEECC--CcHHHHHHcCCCcccEEE
Q 028819 104 VASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD----VQFLQVNYE--EHKSMCYSLNVHVLPFFR 177 (203)
Q Consensus 104 i~s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~----v~f~~Vd~d--~~~~l~~~~~V~~~Pt~~ 177 (203)
..+.+.|.+.+.. +.+..+|.||++|||+|+++.|.++++++...+ +.++.|||- +|..+|++++|..+|++.
T Consensus 43 ~Ld~~tf~~~v~~-~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlr 121 (606)
T KOG1731|consen 43 ELDVDTFNAAVFG-SRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLR 121 (606)
T ss_pred EeehhhhHHHhcc-cchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceee
Confidence 3455677777753 446889999999999999999999999987654 899999995 588899999999999999
Q ss_pred EEECC
Q 028819 178 FYRGA 182 (203)
Q Consensus 178 ~~~~g 182 (203)
+|..+
T Consensus 122 yf~~~ 126 (606)
T KOG1731|consen 122 YFPPD 126 (606)
T ss_pred ecCCc
Confidence 99654
No 100
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.99 E-value=1.8e-09 Score=81.81 Aligned_cols=74 Identities=15% Similarity=0.220 Sum_probs=48.4
Q ss_pred cCCCeEEEEEECCCChhhHHHHHHHH---HHHHhCC-CcEEEEEECCCc-HHHHHHcCCCcccEEEEEE-CCCeeEEEEe
Q 028819 117 AGDKLVVVDFFSPGCGGCKALHPKIC---QLAEMNP-DVQFLQVNYEEH-KSMCYSLNVHVLPFFRFYR-GAHGRVCSFS 190 (203)
Q Consensus 117 ~~~k~vvV~F~a~WC~~Ck~~~p~l~---~la~~~~-~v~f~~Vd~d~~-~~l~~~~~V~~~Pt~~~~~-~g~~~v~~~~ 190 (203)
.++|+++|+|+++||++|+.+...+- ++.+... +...+.++.|.. .... ..+ .++||++|+. +|+ .+.++.
T Consensus 21 ~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~-~~g-~~vPtivFld~~g~-vi~~i~ 97 (130)
T cd02960 21 KSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS-PDG-QYVPRIMFVDPSLT-VRADIT 97 (130)
T ss_pred HCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC-ccC-cccCeEEEECCCCC-Cccccc
Confidence 67999999999999999999997542 3333221 344446665422 1111 233 6899999995 444 677777
Q ss_pred cCC
Q 028819 191 CTN 193 (203)
Q Consensus 191 g~~ 193 (203)
|..
T Consensus 98 Gy~ 100 (130)
T cd02960 98 GRY 100 (130)
T ss_pred ccc
Confidence 643
No 101
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1.8e-09 Score=95.58 Aligned_cols=88 Identities=25% Similarity=0.477 Sum_probs=70.6
Q ss_pred eEEeCCHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCC---CcEEEEEECCCcHHHHHHcCCCcccEEE
Q 028819 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP---DVQFLQVNYEEHKSMCYSLNVHVLPFFR 177 (203)
Q Consensus 101 ~~~i~s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~---~v~f~~Vd~d~~~~l~~~~~V~~~Pt~~ 177 (203)
+.+++.. ++..... ..+..++|.||+|||++|+.+.|.|++++..+. ++.+..+|++.+..++.+++|..+||+.
T Consensus 146 v~~l~~~-~~~~~~~-~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~ 223 (383)
T KOG0191|consen 146 VFELTKD-NFDETVK-DSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLK 223 (383)
T ss_pred eEEcccc-chhhhhh-ccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEE
Confidence 4444433 3333333 567889999999999999999999999998774 3999999999999999999999999999
Q ss_pred EEECCCee-EEEEec
Q 028819 178 FYRGAHGR-VCSFSC 191 (203)
Q Consensus 178 ~~~~g~~~-v~~~~g 191 (203)
+|.+|. + ...+.|
T Consensus 224 ~f~~~~-~~~~~~~~ 237 (383)
T KOG0191|consen 224 LFPPGE-EDIYYYSG 237 (383)
T ss_pred EecCCC-cccccccc
Confidence 999887 4 444444
No 102
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.95 E-value=6.9e-09 Score=82.82 Aligned_cols=70 Identities=16% Similarity=0.178 Sum_probs=54.3
Q ss_pred EEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCc-------------HHHHHHcCC--CcccEEEEEE-CCCeeE
Q 028819 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH-------------KSMCYSLNV--HVLPFFRFYR-GAHGRV 186 (203)
Q Consensus 123 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~-------------~~l~~~~~V--~~~Pt~~~~~-~g~~~v 186 (203)
+|+||++||++|+++.|.+++++++| ++.++.|+.|+. ..+.+.|++ .++|+.+++. +|+ .+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~-g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~-i~ 150 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY-GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTL-EA 150 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc-CCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCc-EE
Confidence 77799999999999999999999998 577777776632 236678885 6999999984 454 33
Q ss_pred -EEEecCCc
Q 028819 187 -CSFSCTNA 194 (203)
Q Consensus 187 -~~~~g~~~ 194 (203)
..+.|..+
T Consensus 151 ~~~~~G~~~ 159 (181)
T PRK13728 151 LPLLQGATD 159 (181)
T ss_pred EEEEECCCC
Confidence 46788654
No 103
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.94 E-value=1.1e-08 Score=75.42 Aligned_cols=77 Identities=16% Similarity=0.138 Sum_probs=60.0
Q ss_pred cCCCeEEEEEECCCChhhHHHHHH-H--HHHHHhCC-CcEEEEEECC--CcHHHHHHcCCCcccEEEEEEC--CCeeEEE
Q 028819 117 AGDKLVVVDFFSPGCGGCKALHPK-I--CQLAEMNP-DVQFLQVNYE--EHKSMCYSLNVHVLPFFRFYRG--AHGRVCS 188 (203)
Q Consensus 117 ~~~k~vvV~F~a~WC~~Ck~~~p~-l--~~la~~~~-~v~f~~Vd~d--~~~~l~~~~~V~~~Pt~~~~~~--g~~~v~~ 188 (203)
+++|+++|+|+++||++|+.+... | .++.+... +..++.+|.+ +...++..|++.++|+++++.. |+ .+..
T Consensus 15 ~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~-~l~~ 93 (114)
T cd02958 15 SEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGE-VLKV 93 (114)
T ss_pred hhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCc-EeEE
Confidence 568999999999999999999753 3 23444333 4778888876 4667899999999999999974 55 7888
Q ss_pred EecCCc
Q 028819 189 FSCTNA 194 (203)
Q Consensus 189 ~~g~~~ 194 (203)
+.|...
T Consensus 94 ~~G~~~ 99 (114)
T cd02958 94 WSGNIT 99 (114)
T ss_pred EcCCCC
Confidence 888654
No 104
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.9e-09 Score=87.30 Aligned_cols=94 Identities=14% Similarity=0.236 Sum_probs=82.0
Q ss_pred CeEEeCCHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC--cEEEEEECCCcHHHHHHcCCC------
Q 028819 100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEEHKSMCYSLNVH------ 171 (203)
Q Consensus 100 ~~~~i~s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~--v~f~~Vd~d~~~~l~~~~~V~------ 171 (203)
.+...++.+.+++.+..+....++|.|+|.|.+.|....|.+.+++.+|.. ..|.+||+...++.+++|+|.
T Consensus 125 ~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~sr 204 (265)
T KOG0914|consen 125 TIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSR 204 (265)
T ss_pred heeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccc
Confidence 455677888888888878889999999999999999999999999999864 999999999999999999875
Q ss_pred cccEEEEEECCCeeEEEEecCCc
Q 028819 172 VLPFFRFYRGAHGRVCSFSCTNA 194 (203)
Q Consensus 172 ~~Pt~~~~~~g~~~v~~~~g~~~ 194 (203)
.+||+++|++|+ ++.+....+.
T Consensus 205 QLPT~ilFq~gk-E~~RrP~vd~ 226 (265)
T KOG0914|consen 205 QLPTYILFQKGK-EVSRRPDVDV 226 (265)
T ss_pred cCCeEEEEccch-hhhcCccccc
Confidence 589999999998 7777665544
No 105
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.92 E-value=1.3e-08 Score=77.18 Aligned_cols=84 Identities=15% Similarity=0.041 Sum_probs=67.4
Q ss_pred hHHHHHHHccCCCeEEEEEECC--CChhhHHHHHHHHHHHHhCC-C-cEEEEEECCCcHHHHHHcCCCcccEEEEEECCC
Q 028819 108 QDLVESLWHAGDKLVVVDFFSP--GCGGCKALHPKICQLAEMNP-D-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH 183 (203)
Q Consensus 108 ~~~~~~l~~~~~k~vvV~F~a~--WC~~Ck~~~p~l~~la~~~~-~-v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g~ 183 (203)
..+.+.+. .....+|.|-.+ -++.+-.+.-.+++++++|+ + ++|++||.|++++++.+|||.++||+++|+||+
T Consensus 25 ~~~~~~~~--~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdGk 102 (132)
T PRK11509 25 SRLDDWLT--QAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGN 102 (132)
T ss_pred ccHHHHHh--CCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEECCE
Confidence 34444453 344455555543 36777888889999999998 3 899999999999999999999999999999999
Q ss_pred eeEEEEecCCc
Q 028819 184 GRVCSFSCTNA 194 (203)
Q Consensus 184 ~~v~~~~g~~~ 194 (203)
.+..+.|..+
T Consensus 103 -~v~~i~G~~~ 112 (132)
T PRK11509 103 -YRGVLNGIHP 112 (132)
T ss_pred -EEEEEeCcCC
Confidence 8999999654
No 106
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.90 E-value=9e-09 Score=82.70 Aligned_cols=62 Identities=16% Similarity=0.352 Sum_probs=48.9
Q ss_pred CCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECC--------------------CcHHHHHHcCCCcccEEE
Q 028819 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE--------------------EHKSMCYSLNVHVLPFFR 177 (203)
Q Consensus 118 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d--------------------~~~~l~~~~~V~~~Pt~~ 177 (203)
.+|+++|+||++||++|+.+.|.+.++.+++ ++.++.|+.+ ...++++.|++..+|+.+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~ 151 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGV 151 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEE
Confidence 6789999999999999999999999998765 3444444421 134677889999999988
Q ss_pred EEE
Q 028819 178 FYR 180 (203)
Q Consensus 178 ~~~ 180 (203)
++.
T Consensus 152 lID 154 (189)
T TIGR02661 152 LLD 154 (189)
T ss_pred EEC
Confidence 774
No 107
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.87 E-value=1.6e-08 Score=63.97 Aligned_cols=60 Identities=28% Similarity=0.505 Sum_probs=51.9
Q ss_pred EEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHHH---HcCCCcccEEEEEECC
Q 028819 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCY---SLNVHVLPFFRFYRGA 182 (203)
Q Consensus 123 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~---~~~V~~~Pt~~~~~~g 182 (203)
++.||++||++|+.+.+.+.++.....++.+..++++......+ .+++..+|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 57899999999999999999995555679999999998776654 7899999999999876
No 108
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.81 E-value=6.3e-08 Score=72.09 Aligned_cols=99 Identities=12% Similarity=0.143 Sum_probs=83.5
Q ss_pred EeCCHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC-cEEEEEECCCcHHHHHHcCCCcccEEEEEEC
Q 028819 103 EVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRG 181 (203)
Q Consensus 103 ~i~s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~ 181 (203)
.+++..+.++++....+++|||-|.-+|-+.|..+...+..+++...+ +.++-+|.|+-+.+.+-|++...||+++|-+
T Consensus 7 ~L~s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn 86 (142)
T KOG3414|consen 7 TLHSGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFN 86 (142)
T ss_pred ccccHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEc
Confidence 477888899999888899999999999999999999999999999888 8899999999999999999999999998877
Q ss_pred CCeeEEEEecCCcccccccc
Q 028819 182 AHGRVCSFSCTNATVSTDSV 201 (203)
Q Consensus 182 g~~~v~~~~g~~~~i~~~~v 201 (203)
++-....+.-.+.+.+++.+
T Consensus 87 ~kHmkiD~gtgdn~Kin~~~ 106 (142)
T KOG3414|consen 87 NKHMKIDLGTGDNNKINFAF 106 (142)
T ss_pred CceEEEeeCCCCCceEEEEe
Confidence 76344444444445555443
No 109
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.80 E-value=2.5e-08 Score=75.58 Aligned_cols=90 Identities=18% Similarity=0.300 Sum_probs=57.7
Q ss_pred hHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHHHH---cCCCcccEEEEEECCCe
Q 028819 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYS---LNVHVLPFFRFYRGAHG 184 (203)
Q Consensus 108 ~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~---~~V~~~Pt~~~~~~g~~ 184 (203)
++....+.....+.-++.|..+|||.|....|.+.++++..|++.+-.+..|+++++.++ .+...+|+++++.++..
T Consensus 30 ~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~ 109 (129)
T PF14595_consen 30 EEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGK 109 (129)
T ss_dssp HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--
T ss_pred HHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCC
Confidence 334445554566678888999999999999999999999999887777777888777665 46889999999965432
Q ss_pred eEEEEecCCcccc
Q 028819 185 RVCSFSCTNATVS 197 (203)
Q Consensus 185 ~v~~~~g~~~~i~ 197 (203)
.+..+......+.
T Consensus 110 ~lg~wgerP~~~~ 122 (129)
T PF14595_consen 110 ELGRWGERPKEVQ 122 (129)
T ss_dssp EEEEEESS-HHHH
T ss_pred EeEEEcCCCHHHh
Confidence 6666655544433
No 110
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.80 E-value=1.8e-08 Score=80.66 Aligned_cols=72 Identities=7% Similarity=-0.036 Sum_probs=53.2
Q ss_pred CCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEE------EEEECCC-----------------------------cH
Q 028819 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQF------LQVNYEE-----------------------------HK 162 (203)
Q Consensus 118 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f------~~Vd~d~-----------------------------~~ 162 (203)
.+|+.+|+|||+||++|+..+|.+++++++ ++.+ +.||.|+ ..
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~--~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g 135 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA--KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKG 135 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHc--CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcc
Confidence 599999999999999999999999999764 2344 5555443 23
Q ss_pred HHHHHcCCCcccEE-EEE-ECCCeeEEEEecC
Q 028819 163 SMCYSLNVHVLPFF-RFY-RGAHGRVCSFSCT 192 (203)
Q Consensus 163 ~l~~~~~V~~~Pt~-~~~-~~g~~~v~~~~g~ 192 (203)
.+...|++.++|+. +++ ++|+ .+..+.|.
T Consensus 136 ~v~~~~gv~~~P~T~fVIDk~Gk-Vv~~~~G~ 166 (184)
T TIGR01626 136 AVKNAWQLNSEDSAIIVLDKTGK-VKFVKEGA 166 (184)
T ss_pred hHHHhcCCCCCCceEEEECCCCc-EEEEEeCC
Confidence 45678999999877 444 3444 56677775
No 111
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.78 E-value=2.7e-08 Score=80.67 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=38.1
Q ss_pred CCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC--cEEEEEECC
Q 028819 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYE 159 (203)
Q Consensus 118 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~--v~f~~Vd~d 159 (203)
.++++||+|||+||++|+...|.++++.++|.+ +.++.|+++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~ 81 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTS 81 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecch
Confidence 578999999999999999999999999999864 899999863
No 112
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.77 E-value=6e-08 Score=76.26 Aligned_cols=69 Identities=20% Similarity=0.353 Sum_probs=56.4
Q ss_pred CCCeEEEEEECCCChhhHHHHHHHHHHHHhCC--CcEEEEEECCC-----------------------------cHHHHH
Q 028819 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-----------------------------HKSMCY 166 (203)
Q Consensus 118 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d~-----------------------------~~~l~~ 166 (203)
+++++||+||++||+.|....+.+.++.++++ ++.|+.|..|. +..+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 67899999999999999999999999999987 48999887653 224567
Q ss_pred HcCCCcccEEEEEECCCeeEE
Q 028819 167 SLNVHVLPFFRFYRGAHGRVC 187 (203)
Q Consensus 167 ~~~V~~~Pt~~~~~~g~~~v~ 187 (203)
.|++..+|+++++..+ |++.
T Consensus 104 ~~~v~~~P~~~lid~~-G~v~ 123 (171)
T cd02969 104 AYGAACTPDFFLFDPD-GKLV 123 (171)
T ss_pred HcCCCcCCcEEEECCC-CeEE
Confidence 8999999999888533 2444
No 113
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.74 E-value=4e-08 Score=65.54 Aligned_cols=64 Identities=14% Similarity=0.250 Sum_probs=48.8
Q ss_pred EEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHH----HHHHcCCCcccEEEEEECCCeeEEEEecCCcccc
Q 028819 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS----MCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATVS 197 (203)
Q Consensus 123 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~----l~~~~~V~~~Pt~~~~~~g~~~v~~~~g~~~~i~ 197 (203)
+..|+++||++|+.+.+.+++ .++.+..+|+++++. +.+.+++.++|++++. |+ + +.|.+...+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-----~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~--~--~~g~~~~~i 69 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-----KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HK--I--IVGFDPEKL 69 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-----CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CE--E--EeeCCHHHH
Confidence 467999999999999988865 368899999987654 4567999999999874 43 2 556555433
No 114
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.74 E-value=2.5e-08 Score=74.48 Aligned_cols=94 Identities=15% Similarity=0.278 Sum_probs=63.2
Q ss_pred eCCHhHHHHHHHc--cCCCeEEEEEEC-------CCChhhHHHHHHHHHHHHhCC-CcEEEEEECCCc-------HHHHH
Q 028819 104 VASAQDLVESLWH--AGDKLVVVDFFS-------PGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEH-------KSMCY 166 (203)
Q Consensus 104 i~s~~~~~~~l~~--~~~k~vvV~F~a-------~WC~~Ck~~~p~l~~la~~~~-~v~f~~Vd~d~~-------~~l~~ 166 (203)
+...++|.+.+.. .++++++|.|++ +|||.|.+..|.+++.-...+ +..|+.|.+... ..+..
T Consensus 2 v~gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~ 81 (119)
T PF06110_consen 2 VRGYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRT 81 (119)
T ss_dssp EECHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH
T ss_pred ccCHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceE
Confidence 3456778888864 567899999996 599999999999998877766 488888887432 23333
Q ss_pred --HcCCCcccEEEEEECCCeeEEEEecCCccccc
Q 028819 167 --SLNVHVLPFFRFYRGAHGRVCSFSCTNATVST 198 (203)
Q Consensus 167 --~~~V~~~Pt~~~~~~g~~~v~~~~g~~~~i~~ 198 (203)
++++.++||++-|..++ ++..-.+.+.++++
T Consensus 82 ~p~~~l~~IPTLi~~~~~~-rL~e~e~~~~~lv~ 114 (119)
T PF06110_consen 82 DPDLKLKGIPTLIRWETGE-RLVEEECLNEDLVE 114 (119)
T ss_dssp --CC---SSSEEEECTSS--EEEHHHHH-HHHHH
T ss_pred cceeeeeecceEEEECCCC-ccchhhhccHHHHH
Confidence 59999999999997775 66655555555443
No 115
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.66 E-value=9.5e-08 Score=64.69 Aligned_cols=55 Identities=16% Similarity=0.265 Sum_probs=42.6
Q ss_pred EEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHHHH-----cCCCcccEEEEEECCC
Q 028819 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYS-----LNVHVLPFFRFYRGAH 183 (203)
Q Consensus 123 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~-----~~V~~~Pt~~~~~~g~ 183 (203)
++.||++||++|+.+.+.+.++. +.+-.+|+++++..... +++..+|++ ++.+|.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~-----~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~ 61 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG-----AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGS 61 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC-----CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCe
Confidence 56799999999999999987663 45667888877665555 389999997 466665
No 116
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.64 E-value=1.7e-07 Score=77.91 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=38.2
Q ss_pred CCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC--cEEEEEECC
Q 028819 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYE 159 (203)
Q Consensus 118 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~--v~f~~Vd~d 159 (203)
.++++||+||++||++|+...|.+.++.++|.+ +.++.|+++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d 141 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCN 141 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 578999999999999999999999999999864 899999864
No 117
>smart00594 UAS UAS domain.
Probab=98.64 E-value=4.4e-07 Score=67.84 Aligned_cols=64 Identities=9% Similarity=0.211 Sum_probs=49.9
Q ss_pred cCCCeEEEEEECCCChhhHHHHHHH---HHHHHhCC-CcEEEEEECCC--cHHHHHHcCCCcccEEEEEE
Q 028819 117 AGDKLVVVDFFSPGCGGCKALHPKI---CQLAEMNP-DVQFLQVNYEE--HKSMCYSLNVHVLPFFRFYR 180 (203)
Q Consensus 117 ~~~k~vvV~F~a~WC~~Ck~~~p~l---~~la~~~~-~v~f~~Vd~d~--~~~l~~~~~V~~~Pt~~~~~ 180 (203)
+.+|+++|+|+++||++|+.+...+ .++.+... ++.+..+|++. ...++..|++.++|+++++.
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~ 94 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVD 94 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEe
Confidence 5788999999999999999987543 23333332 47777888763 56789999999999999995
No 118
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=1.8e-08 Score=81.97 Aligned_cols=90 Identities=21% Similarity=0.300 Sum_probs=79.6
Q ss_pred eEEeCCHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHHHHcCCCcccEEEEEE
Q 028819 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 180 (203)
Q Consensus 101 ~~~i~s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~ 180 (203)
+..+...++| .. ..++.++++||++||.+|+++...++.+++..+++.|++++.++.++++..+.+..+|+++++.
T Consensus 3 v~~i~~~~~f--~~--~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~ 78 (227)
T KOG0911|consen 3 VQFIVFQEQF--LD--QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEFPEISNLIAVEAVPYFVFFF 78 (227)
T ss_pred ceeehhHHHH--HH--hccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhhhHHHHHHHHhcCceeeeee
Confidence 4567777878 22 3788999999999999999999999999999888999999999999999999999999999999
Q ss_pred CCCeeEEEEecCCcc
Q 028819 181 GAHGRVCSFSCTNAT 195 (203)
Q Consensus 181 ~g~~~v~~~~g~~~~ 195 (203)
.|+ .+.++.|++..
T Consensus 79 ~~~-~v~~l~~~~~~ 92 (227)
T KOG0911|consen 79 LGE-KVDRLSGADPP 92 (227)
T ss_pred cch-hhhhhhccCcH
Confidence 888 78888887653
No 119
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.63 E-value=1.6e-07 Score=72.67 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=36.7
Q ss_pred CCCeEEEEEECCCChhhHHHHHHHHHHHHhCC--CcEEEEEECC
Q 028819 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYE 159 (203)
Q Consensus 118 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d 159 (203)
.+|+|||+||++||+ |+...|.++++.++|. ++.++.|+.+
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 479999999999999 9999999999999986 3889888753
No 120
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.62 E-value=1.8e-07 Score=68.92 Aligned_cols=66 Identities=20% Similarity=0.329 Sum_probs=55.0
Q ss_pred CCCeEEEEEECC-CChhhHHHHHHHHHHHHhCC--CcEEEEEECCC---------------------cHHHHHHcCCC--
Q 028819 118 GDKLVVVDFFSP-GCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------HKSMCYSLNVH-- 171 (203)
Q Consensus 118 ~~k~vvV~F~a~-WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d~---------------------~~~l~~~~~V~-- 171 (203)
.++++||.||+. ||+.|+...+.+.++.++++ ++.++.|..|. ...+++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 579999999999 99999999999999998876 59999998753 33567778888
Q ss_pred ----cccEEEEEECCC
Q 028819 172 ----VLPFFRFYRGAH 183 (203)
Q Consensus 172 ----~~Pt~~~~~~g~ 183 (203)
.+|+++++..+.
T Consensus 104 ~~~~~~p~~~lid~~g 119 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDG 119 (124)
T ss_dssp TTSEESEEEEEEETTS
T ss_pred cCCceEeEEEEECCCC
Confidence 888888886544
No 121
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=1.5e-07 Score=69.46 Aligned_cols=93 Identities=19% Similarity=0.356 Sum_probs=70.0
Q ss_pred CHhHHHHHHHc-cCCCeEEEEEEC--------CCChhhHHHHHHHHHHHHhCCC-cEEEEEECCC-------cHHHHHHc
Q 028819 106 SAQDLVESLWH-AGDKLVVVDFFS--------PGCGGCKALHPKICQLAEMNPD-VQFLQVNYEE-------HKSMCYSL 168 (203)
Q Consensus 106 s~~~~~~~l~~-~~~k~vvV~F~a--------~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~-------~~~l~~~~ 168 (203)
-.++|...+.+ .+++.++|+|++ +|||.|.+..|.+.+.-++.+. +.|+.|++.+ +..+....
T Consensus 11 g~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~ 90 (128)
T KOG3425|consen 11 GYESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDP 90 (128)
T ss_pred hHHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCC
Confidence 34566666652 356669999996 7999999999999998887774 9999999864 33455566
Q ss_pred CC-CcccEEEEEECCCeeEEEEecCCccccc
Q 028819 169 NV-HVLPFFRFYRGAHGRVCSFSCTNATVST 198 (203)
Q Consensus 169 ~V-~~~Pt~~~~~~g~~~v~~~~g~~~~i~~ 198 (203)
++ .++||++-|+++.++....+..++.+.+
T Consensus 91 ~~lt~vPTLlrw~~~~~rL~~~q~~~~~Lve 121 (128)
T KOG3425|consen 91 GILTAVPTLLRWKRQPQRLDGLQCLNDHLVE 121 (128)
T ss_pred CceeecceeeEEcCccccchHhHhhHHHHHH
Confidence 77 9999999998554577777776666554
No 122
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.58 E-value=5.8e-07 Score=68.32 Aligned_cols=73 Identities=11% Similarity=0.069 Sum_probs=54.9
Q ss_pred CCCeEEEEEECCC-ChhhHHHHHHHHHHHHhCCCcEEEEEECCCc-----------------------HHHHHHcCCCc-
Q 028819 118 GDKLVVVDFFSPG-CGGCKALHPKICQLAEMNPDVQFLQVNYEEH-----------------------KSMCYSLNVHV- 172 (203)
Q Consensus 118 ~~k~vvV~F~a~W-C~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~-----------------------~~l~~~~~V~~- 172 (203)
.+|++||+||+.| |++|+...|.+.++.++++++.++.|+.|.. ..+++.|++..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~ 104 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLIK 104 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCeec
Confidence 4789999999999 6999999999999999998899999887521 34556677653
Q ss_pred -----ccEEEEEE-CCCeeEEEEec
Q 028819 173 -----LPFFRFYR-GAHGRVCSFSC 191 (203)
Q Consensus 173 -----~Pt~~~~~-~g~~~v~~~~g 191 (203)
.|+.+++. +|. .+....|
T Consensus 105 ~~~~~~~~~~iid~~G~-I~~~~~~ 128 (143)
T cd03014 105 DLGLLARAVFVIDENGK-VIYVELV 128 (143)
T ss_pred cCCccceEEEEEcCCCe-EEEEEEC
Confidence 57767664 444 4444444
No 123
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.56 E-value=1.3e-07 Score=73.08 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=37.5
Q ss_pred CCCeEEEEEECCCChhhHHHHHHHHHHHHhCC--CcEEEEEEC
Q 028819 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNY 158 (203)
Q Consensus 118 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~ 158 (203)
.+|++||.|||+||++|+...|.+.++.++|. ++.++.|++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC 63 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence 57899999999999999999999999999986 489999985
No 124
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.55 E-value=8e-07 Score=69.96 Aligned_cols=42 Identities=21% Similarity=0.216 Sum_probs=38.0
Q ss_pred CCCeEEEEEECCC-ChhhHHHHHHHHHHHHhCCCcEEEEEECC
Q 028819 118 GDKLVVVDFFSPG-CGGCKALHPKICQLAEMNPDVQFLQVNYE 159 (203)
Q Consensus 118 ~~k~vvV~F~a~W-C~~Ck~~~p~l~~la~~~~~v~f~~Vd~d 159 (203)
.+|++||+||++| |++|....|.+.++++++.++.++.|..|
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D 85 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISAD 85 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 4789999999999 99999999999999999877888888765
No 125
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.52 E-value=2.1e-06 Score=64.62 Aligned_cols=99 Identities=14% Similarity=0.159 Sum_probs=75.3
Q ss_pred EEeCCHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC-cEEEEEECCCcHHHHHHcCCCccc-EEEEE
Q 028819 102 REVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLP-FFRFY 179 (203)
Q Consensus 102 ~~i~s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~~l~~~~~V~~~P-t~~~~ 179 (203)
..+++..+.++++....+|.|++-|.-+|-+.|.++...+.+++++..+ ..++.||.++-+.+.+.|.+. .| |+++|
T Consensus 3 ~~L~s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF 81 (133)
T PF02966_consen 3 PHLHSGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFF 81 (133)
T ss_dssp EEE-SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEE
T ss_pred cccCccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEE
Confidence 4578888999999988999999999999999999999999999999887 899999999999999999999 66 56666
Q ss_pred ECCCeeEEEEecCCcccccccc
Q 028819 180 RGAHGRVCSFSCTNATVSTDSV 201 (203)
Q Consensus 180 ~~g~~~v~~~~g~~~~i~~~~v 201 (203)
-+++-....+--.+...+.+.+
T Consensus 82 ~rnkhm~vD~GtgnnnKin~~~ 103 (133)
T PF02966_consen 82 FRNKHMMVDFGTGNNNKINWAF 103 (133)
T ss_dssp ETTEEEEEESSSSSSSSBCS--
T ss_pred ecCeEEEEEecCCCccEEEEEc
Confidence 5665344444333444455544
No 126
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.51 E-value=6.8e-07 Score=67.39 Aligned_cols=75 Identities=15% Similarity=0.094 Sum_probs=58.4
Q ss_pred CCCeEEEEEE-CCCChhhHHHHHHHHHHHHhCC--CcEEEEEECC---------------------CcHHHHHHcCCCcc
Q 028819 118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYE---------------------EHKSMCYSLNVHVL 173 (203)
Q Consensus 118 ~~k~vvV~F~-a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d---------------------~~~~l~~~~~V~~~ 173 (203)
.+++++|.|| +.||+.|....|.+.++.+++. ++.++.|..| ....+++.|++...
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 4789999999 5899999999999999888764 4777777654 33467788898888
Q ss_pred ---------cEEEEEE-CCCeeEEEEecCC
Q 028819 174 ---------PFFRFYR-GAHGRVCSFSCTN 193 (203)
Q Consensus 174 ---------Pt~~~~~-~g~~~v~~~~g~~ 193 (203)
|+.+++. +|+ .+..+.|..
T Consensus 102 ~~~~~~~~~p~~~lid~~G~-v~~~~~g~~ 130 (140)
T cd03017 102 KKKKYMGIERSTFLIDPDGK-IVKVWRKVK 130 (140)
T ss_pred cccccCCcceeEEEECCCCE-EEEEEecCC
Confidence 8888886 454 677777755
No 127
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.50 E-value=1.7e-06 Score=71.04 Aligned_cols=69 Identities=19% Similarity=0.298 Sum_probs=58.6
Q ss_pred HHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECC-----------CcHHHHHHcCCCcccEEEEEECC
Q 028819 114 LWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE-----------EHKSMCYSLNVHVLPFFRFYRGA 182 (203)
Q Consensus 114 l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d-----------~~~~l~~~~~V~~~Pt~~~~~~g 182 (203)
+..-.++.-|+.||.+.|+.|+.+.|.+..++++| ++.+..|+.| .+..++++++|..+|++++...+
T Consensus 115 l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~ 193 (215)
T PF13728_consen 115 LKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPN 193 (215)
T ss_pred HHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECC
Confidence 33345788999999999999999999999999999 7777777776 35789999999999999988654
Q ss_pred C
Q 028819 183 H 183 (203)
Q Consensus 183 ~ 183 (203)
.
T Consensus 194 ~ 194 (215)
T PF13728_consen 194 T 194 (215)
T ss_pred C
Confidence 4
No 128
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.50 E-value=2.7e-07 Score=71.60 Aligned_cols=64 Identities=19% Similarity=0.308 Sum_probs=48.7
Q ss_pred CCCeEEEEEECCCChhhHHHHHHHHHHHHhCC----C--cEEEEEECCC-----------------------cHHHHHHc
Q 028819 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP----D--VQFLQVNYEE-----------------------HKSMCYSL 168 (203)
Q Consensus 118 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~----~--v~f~~Vd~d~-----------------------~~~l~~~~ 168 (203)
.+|.|.++|.|.||+||+.+.|.+.++.++.. . |.|+.-|-+. ...+++.|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 57999999999999999999999987766532 2 4444444321 23577889
Q ss_pred CCCcccEEEEEEC
Q 028819 169 NVHVLPFFRFYRG 181 (203)
Q Consensus 169 ~V~~~Pt~~~~~~ 181 (203)
+|.++|++++.+.
T Consensus 112 ~v~~iP~l~i~~~ 124 (157)
T KOG2501|consen 112 EVKGIPALVILKP 124 (157)
T ss_pred ccCcCceeEEecC
Confidence 9999999998864
No 129
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.46 E-value=1.5e-06 Score=65.96 Aligned_cols=42 Identities=24% Similarity=0.335 Sum_probs=33.7
Q ss_pred CCeEEEEEECCCChhhHHHHHHHHHHHHhCC--CcEEEEEECCC
Q 028819 119 DKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE 160 (203)
Q Consensus 119 ~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d~ 160 (203)
++.+|+.||++||++|+...|.+.++.+++. ++.++.|+.+.
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~ 67 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPES 67 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCC
Confidence 3445555569999999999999999999874 58899888664
No 130
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.42 E-value=4e-08 Score=80.45 Aligned_cols=85 Identities=20% Similarity=0.338 Sum_probs=73.0
Q ss_pred CCHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC--cEEEEEECCCcHHHHHHcCCCcccEEEEEECC
Q 028819 105 ASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGA 182 (203)
Q Consensus 105 ~s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~--v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g 182 (203)
.+.+.+...+. + -.++.|+|+||+.|+...|.|++++.--.| |.+..||+..++.+.-+|-|..+|||.-.++|
T Consensus 29 ~~eenw~~~l~--g--ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHvkDG 104 (248)
T KOG0913|consen 29 IDEENWKELLT--G--EWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHVKDG 104 (248)
T ss_pred ecccchhhhhc--h--HHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEeecc
Confidence 44566666662 2 478999999999999999999999876544 99999999999999999999999999999998
Q ss_pred CeeEEEEecCCcc
Q 028819 183 HGRVCSFSCTNAT 195 (203)
Q Consensus 183 ~~~v~~~~g~~~~ 195 (203)
+ .-+|+|++++
T Consensus 105 e--FrrysgaRdk 115 (248)
T KOG0913|consen 105 E--FRRYSGARDK 115 (248)
T ss_pred c--cccccCcccc
Confidence 6 8889998874
No 131
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.40 E-value=9.2e-07 Score=60.86 Aligned_cols=58 Identities=16% Similarity=0.191 Sum_probs=44.7
Q ss_pred EEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcH-----HHHHHcCCCcccEEEEEECCC
Q 028819 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK-----SMCYSLNVHVLPFFRFYRGAH 183 (203)
Q Consensus 123 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~-----~l~~~~~V~~~Pt~~~~~~g~ 183 (203)
|+.|+++||++|+.+.+.+.++.-. +.+.++.||.+++. .+.+.+++..+|+++ .+|+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~--i~g~ 63 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF--INGK 63 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE--ECCE
Confidence 4779999999999999999998722 23788888876543 266668999999984 4665
No 132
>PLN02412 probable glutathione peroxidase
Probab=98.38 E-value=9.4e-07 Score=69.59 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=38.0
Q ss_pred CCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC--cEEEEEECC
Q 028819 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYE 159 (203)
Q Consensus 118 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~--v~f~~Vd~d 159 (203)
.+|++||+||++||++|+...|.+.++.++|.+ +.++.|+++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~ 71 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCN 71 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEeccc
Confidence 578999999999999999999999999999874 899999864
No 133
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.32 E-value=4.7e-06 Score=62.66 Aligned_cols=76 Identities=14% Similarity=0.020 Sum_probs=56.8
Q ss_pred CCCeEEEEEE-CCCChhhHHHHHHHHHHHHhC--CCcEEEEEECCC----------------------cHHHHHHcCCCc
Q 028819 118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMN--PDVQFLQVNYEE----------------------HKSMCYSLNVHV 172 (203)
Q Consensus 118 ~~k~vvV~F~-a~WC~~Ck~~~p~l~~la~~~--~~v~f~~Vd~d~----------------------~~~l~~~~~V~~ 172 (203)
.+++++|+|| +.||+.|....|.+.++.+++ .++.|+.|..+. ...+.+.|++..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~ 100 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI 100 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence 5789999999 789999999999999998876 347888777542 235667777776
Q ss_pred cc---------EEEEEE-CCCeeEEEEecCCc
Q 028819 173 LP---------FFRFYR-GAHGRVCSFSCTNA 194 (203)
Q Consensus 173 ~P---------t~~~~~-~g~~~v~~~~g~~~ 194 (203)
.| +++++. +|+ .+..+.|.+.
T Consensus 101 ~~~~~~~~~~p~~~lid~~g~-i~~~~~~~~~ 131 (140)
T cd02971 101 EKSAGGGLAARATFIIDPDGK-IRYVEVEPLP 131 (140)
T ss_pred ccccccCceeEEEEEECCCCc-EEEEEecCCC
Confidence 65 566665 354 6667777665
No 134
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.32 E-value=5e-06 Score=63.37 Aligned_cols=74 Identities=12% Similarity=0.066 Sum_probs=54.1
Q ss_pred CCeEEEEEE-CCCChhhHHHHHHHHHHHHhCC--CcEEEEEECC---------------------Cc--HHHHHHcCCCc
Q 028819 119 DKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYE---------------------EH--KSMCYSLNVHV 172 (203)
Q Consensus 119 ~k~vvV~F~-a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d---------------------~~--~~l~~~~~V~~ 172 (203)
+++++|.|| ++||+.|....|.+.++.+++. ++.++.|+.| .. ..+++.|++..
T Consensus 28 ~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~ 107 (149)
T cd03018 28 RKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFD 107 (149)
T ss_pred CCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCcc
Confidence 378888888 9999999999999999998875 4888887654 22 45677788773
Q ss_pred ----cc--EEEEEE-CCCeeEEEEecCC
Q 028819 173 ----LP--FFRFYR-GAHGRVCSFSCTN 193 (203)
Q Consensus 173 ----~P--t~~~~~-~g~~~v~~~~g~~ 193 (203)
+| +.+++. +|+ .+..+.|.+
T Consensus 108 ~~~~~~~~~~~lid~~G~-v~~~~~~~~ 134 (149)
T cd03018 108 EDLGVAERAVFVIDRDGI-IRYAWVSDD 134 (149)
T ss_pred ccCCCccceEEEECCCCE-EEEEEecCC
Confidence 23 666664 454 666666655
No 135
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=98.31 E-value=7.7e-06 Score=59.65 Aligned_cols=82 Identities=16% Similarity=0.204 Sum_probs=62.0
Q ss_pred EEeCCHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC-cEEEEEECCCcHH----HHHHcCCC-cccE
Q 028819 102 REVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKS----MCYSLNVH-VLPF 175 (203)
Q Consensus 102 ~~i~s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~~----l~~~~~V~-~~Pt 175 (203)
..+++.+++.+.+..+.+++++|.=.++.||-.......+++.....++ +.++.+|+-++++ ++.+|||. .-|.
T Consensus 2 ~~L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ 81 (105)
T PF11009_consen 2 KPLTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQ 81 (105)
T ss_dssp -E--SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSE
T ss_pred CccCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCc
Confidence 4688999999999888899999999999999999999999999988877 9999999987654 67889987 6899
Q ss_pred EEEEECCC
Q 028819 176 FRFYRGAH 183 (203)
Q Consensus 176 ~~~~~~g~ 183 (203)
+++++||+
T Consensus 82 ~ili~~g~ 89 (105)
T PF11009_consen 82 VILIKNGK 89 (105)
T ss_dssp EEEEETTE
T ss_pred EEEEECCE
Confidence 99999998
No 136
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.27 E-value=5.5e-06 Score=66.38 Aligned_cols=66 Identities=11% Similarity=-0.029 Sum_probs=50.2
Q ss_pred CCCeEEEEEE-CCCChhhHHHHHHHHHHHHhCC--CcEEEEEECCC-------------------------cHHHHHHcC
Q 028819 118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-------------------------HKSMCYSLN 169 (203)
Q Consensus 118 ~~k~vvV~F~-a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d~-------------------------~~~l~~~~~ 169 (203)
.+|++||+|| ++||++|....|.+.++.+++. ++.++.|..|. ...+++.|+
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 5789999999 9999999999999999888774 47777776542 235667788
Q ss_pred CC------cccEEEEEE-CCC
Q 028819 170 VH------VLPFFRFYR-GAH 183 (203)
Q Consensus 170 V~------~~Pt~~~~~-~g~ 183 (203)
+. ..|+.+++. +|.
T Consensus 110 v~~~~~g~~~p~tfiID~~G~ 130 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGV 130 (187)
T ss_pred CcccCCCceeeEEEEECCCCE
Confidence 76 358777774 443
No 137
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.27 E-value=5.3e-06 Score=65.42 Aligned_cols=42 Identities=19% Similarity=0.097 Sum_probs=35.8
Q ss_pred CCCeEEEEEE-CCCChhhHHHHHHHHHHHHhCC--CcEEEEEECC
Q 028819 118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYE 159 (203)
Q Consensus 118 ~~k~vvV~F~-a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d 159 (203)
.+|++||+|| ++||++|....|.+.++++++. ++.++.|..|
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d 72 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTD 72 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 4689999999 8999999999999999988875 4777777654
No 138
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.26 E-value=4.4e-06 Score=63.08 Aligned_cols=42 Identities=24% Similarity=0.308 Sum_probs=36.6
Q ss_pred CCCeEEEEEECCCChh-hHHHHHHHHHHHHhCC-----CcEEEEEECC
Q 028819 118 GDKLVVVDFFSPGCGG-CKALHPKICQLAEMNP-----DVQFLQVNYE 159 (203)
Q Consensus 118 ~~k~vvV~F~a~WC~~-Ck~~~p~l~~la~~~~-----~v~f~~Vd~d 159 (203)
.++++||.||++||++ |....+.+.++.+++. ++.++.|..|
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 5789999999999998 9999999999988775 3888888765
No 139
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.25 E-value=4.8e-06 Score=58.09 Aligned_cols=59 Identities=22% Similarity=0.312 Sum_probs=48.0
Q ss_pred EEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcH----HHHHHcC--CCcccEEEEEECCC
Q 028819 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK----SMCYSLN--VHVLPFFRFYRGAH 183 (203)
Q Consensus 123 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~----~l~~~~~--V~~~Pt~~~~~~g~ 183 (203)
++.|+.+||+.|++....++++..++.++.+..+|+++++ ++.+..+ +..+|+++ .||+
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~ 67 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQK 67 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCE
Confidence 6779999999999999999999988878999999988643 4544444 57899976 4776
No 140
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.19 E-value=1.1e-05 Score=53.47 Aligned_cols=51 Identities=22% Similarity=0.369 Sum_probs=39.4
Q ss_pred EEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHHHHc----CCCcccEEEE
Q 028819 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSL----NVHVLPFFRF 178 (203)
Q Consensus 123 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~----~V~~~Pt~~~ 178 (203)
++.|+++||++|+.+.+.+.+ .++.+..+|++.+....+.+ ++..+|++++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-----~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~ 56 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-----RGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI 56 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-----CCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE
Confidence 577999999999999887766 25777788887765544443 6889999975
No 141
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.17 E-value=1.1e-05 Score=62.12 Aligned_cols=74 Identities=12% Similarity=0.093 Sum_probs=52.6
Q ss_pred CCCeEEEEEECC-CChhhHHHHHHHHHHHHhCC--CcEEEEEECCC---------------------cHHHHHHcCCCcc
Q 028819 118 GDKLVVVDFFSP-GCGGCKALHPKICQLAEMNP--DVQFLQVNYEE---------------------HKSMCYSLNVHVL 173 (203)
Q Consensus 118 ~~k~vvV~F~a~-WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d~---------------------~~~l~~~~~V~~~ 173 (203)
.+|++||+||+. ||+.|....+.+.++.+++. ++.++.|..|. ...+++.|++...
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 108 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGE 108 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcc
Confidence 578999999986 68889999999999888764 48888887642 3356677777654
Q ss_pred ------------cEEEEEE-CCCeeEEEEecC
Q 028819 174 ------------PFFRFYR-GAHGRVCSFSCT 192 (203)
Q Consensus 174 ------------Pt~~~~~-~g~~~v~~~~g~ 192 (203)
|+.+++. +|+ .+..+.|.
T Consensus 109 ~~~~~~~~~~~~~~~~lid~~G~-i~~~~~g~ 139 (154)
T PRK09437 109 KKFMGKTYDGIHRISFLIDADGK-IEHVFDKF 139 (154)
T ss_pred cccccccccCcceEEEEECCCCE-EEEEEcCC
Confidence 5555553 454 55566664
No 142
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.16 E-value=3.4e-06 Score=67.32 Aligned_cols=42 Identities=14% Similarity=0.166 Sum_probs=35.0
Q ss_pred CCCeE-EEEEECCCChhhHHHHHHHHHHHHhCC--CcEEEEEECC
Q 028819 118 GDKLV-VVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYE 159 (203)
Q Consensus 118 ~~k~v-vV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d 159 (203)
.+|++ |+.+||+||++|+...|.++++.++|. ++.++.|+++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~ 83 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN 83 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence 46654 456699999999999999999999886 4899999763
No 143
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.15 E-value=2.2e-05 Score=65.99 Aligned_cols=70 Identities=10% Similarity=0.169 Sum_probs=56.6
Q ss_pred HHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCc-----------HHHHHHcCCCcccEEEEEEC
Q 028819 113 SLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH-----------KSMCYSLNVHVLPFFRFYRG 181 (203)
Q Consensus 113 ~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~-----------~~l~~~~~V~~~Pt~~~~~~ 181 (203)
.+..-.++.-++.||.+.|+.|.++.|.+..++++| ++.++.|++|.. ..+++++||..+|++++...
T Consensus 144 ~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~y-gi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~ 222 (256)
T TIGR02739 144 AIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY-GISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNP 222 (256)
T ss_pred HHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHh-CCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEEC
Confidence 333334668999999999999999999999999998 477777766643 55889999999999998865
Q ss_pred CC
Q 028819 182 AH 183 (203)
Q Consensus 182 g~ 183 (203)
+.
T Consensus 223 ~t 224 (256)
T TIGR02739 223 KS 224 (256)
T ss_pred CC
Confidence 53
No 144
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=98.14 E-value=1.3e-05 Score=65.18 Aligned_cols=89 Identities=21% Similarity=0.453 Sum_probs=77.0
Q ss_pred CeEEeCCHhHHHHHHHcc-CCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHHHHcCCCcccEEEE
Q 028819 100 NMREVASAQDLVESLWHA-GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF 178 (203)
Q Consensus 100 ~~~~i~s~~~~~~~l~~~-~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~ 178 (203)
-+.++.+..+|.+.+... +.-.++|..|-+.-+.|.++...+.-||.+||-++|+++-. .+-...++|...++||+++
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckiks-s~~gas~~F~~n~lP~Lli 217 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKS-SNTGASDRFSLNVLPTLLI 217 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeee-ccccchhhhcccCCceEEE
Confidence 688999999999999743 45678999999999999999999999999999999999984 4556678999999999999
Q ss_pred EECCCeeEEEEe
Q 028819 179 YRGAHGRVCSFS 190 (203)
Q Consensus 179 ~~~g~~~v~~~~ 190 (203)
|++|+ .+..|.
T Consensus 218 YkgGe-LIgNFv 228 (273)
T KOG3171|consen 218 YKGGE-LIGNFV 228 (273)
T ss_pred eeCCc-hhHHHH
Confidence 99998 554443
No 145
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.11 E-value=2e-05 Score=53.92 Aligned_cols=62 Identities=21% Similarity=0.385 Sum_probs=49.1
Q ss_pred EEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHHHHcCCCcccEEEEEECCCeeEEEEecC
Q 028819 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCT 192 (203)
Q Consensus 124 V~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g~~~v~~~~g~ 192 (203)
|.+++++|+.|..+...+++++.++ ++.+-.+|..+.+++ .+|||.++|++++ ||+ ..|.|.
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~-~i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~---~~~~G~ 64 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEEL-GIEVEIIDIEDFEEI-EKYGVMSVPALVI--NGK---VVFVGR 64 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHT-TEEEEEEETTTHHHH-HHTT-SSSSEEEE--TTE---EEEESS
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhc-CCeEEEEEccCHHHH-HHcCCCCCCEEEE--CCE---EEEEec
Confidence 3447888999999999999999998 487877887777777 9999999999954 665 336774
No 146
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.10 E-value=3.2e-05 Score=60.77 Aligned_cols=72 Identities=15% Similarity=0.172 Sum_probs=45.4
Q ss_pred hHHHHHHHccCCCeEEEEEECCCChhhHHHHH-HH--HHHHHhCC-CcEEEEEECCCcHHHHHHc--------CCCcccE
Q 028819 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHP-KI--CQLAEMNP-DVQFLQVNYEEHKSMCYSL--------NVHVLPF 175 (203)
Q Consensus 108 ~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p-~l--~~la~~~~-~v~f~~Vd~d~~~~l~~~~--------~V~~~Pt 175 (203)
+.+...- +.+|+++|+++++||+.|+.|.. .+ .++++.+. +..-++||.++.+++...| +..++|+
T Consensus 28 ea~~~Ak--~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl 105 (163)
T PF03190_consen 28 EALEKAK--KENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPL 105 (163)
T ss_dssp HHHHHHH--HHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSE
T ss_pred HHHHHHH--hcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCc
Confidence 4444443 57899999999999999999984 22 23443332 2677789999999998887 7889999
Q ss_pred EEEEEC
Q 028819 176 FRFYRG 181 (203)
Q Consensus 176 ~~~~~~ 181 (203)
.+|...
T Consensus 106 ~vfltP 111 (163)
T PF03190_consen 106 TVFLTP 111 (163)
T ss_dssp EEEE-T
T ss_pred eEEECC
Confidence 999864
No 147
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.09 E-value=1e-05 Score=56.73 Aligned_cols=59 Identities=20% Similarity=0.281 Sum_probs=46.8
Q ss_pred EEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCc----HHHHHHcCC--CcccEEEEEECCC
Q 028819 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH----KSMCYSLNV--HVLPFFRFYRGAH 183 (203)
Q Consensus 123 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~----~~l~~~~~V--~~~Pt~~~~~~g~ 183 (203)
++.|..+||++|.++...++++..+++++.+..+|++.. .++.+..+- ..+|+++ .+|+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if--i~g~ 66 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF--VDEK 66 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE--ECCE
Confidence 577999999999999999999988877788888888743 245566663 7899985 3665
No 148
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.02 E-value=5.1e-05 Score=61.01 Aligned_cols=63 Identities=11% Similarity=0.026 Sum_probs=49.5
Q ss_pred CCCeEEEEEE-CCCChhhHHHHHHHHHHHHhCC--CcEEEEEECCC-------------------------cHHHHHHcC
Q 028819 118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE-------------------------HKSMCYSLN 169 (203)
Q Consensus 118 ~~k~vvV~F~-a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d~-------------------------~~~l~~~~~ 169 (203)
.+|++|+.|| ++||+.|....+.+.++.+++. ++.++.|..|. +..+++.|+
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 5679999999 9999999999999999998874 47777776543 346777888
Q ss_pred CC----cc--cEEEEEE
Q 028819 170 VH----VL--PFFRFYR 180 (203)
Q Consensus 170 V~----~~--Pt~~~~~ 180 (203)
+. ++ |+.+++.
T Consensus 110 v~~~~~g~~~r~tfIID 126 (187)
T PRK10382 110 NMREDEGLADRATFVVD 126 (187)
T ss_pred CCcccCCceeeEEEEEC
Confidence 73 55 8777774
No 149
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=97.96 E-value=1.7e-05 Score=63.54 Aligned_cols=41 Identities=7% Similarity=0.143 Sum_probs=36.2
Q ss_pred CCCeEEEEEECCCChhhHHHHHHHHHHHHhCC--CcEEEEEECC
Q 028819 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYE 159 (203)
Q Consensus 118 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d 159 (203)
.+|++||.|||+||++|+. .|.++++.++|. ++.++.+.++
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence 5799999999999999974 889999999986 4899999874
No 150
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=6.1e-05 Score=58.45 Aligned_cols=78 Identities=18% Similarity=0.331 Sum_probs=58.8
Q ss_pred cCCCeEEEEEECCCChhhHHHHHHHH---HHHHhCCC-cEEEEEECC----------------CcHHHHHHcCCCcccEE
Q 028819 117 AGDKLVVVDFFSPGCGGCKALHPKIC---QLAEMNPD-VQFLQVNYE----------------EHKSMCYSLNVHVLPFF 176 (203)
Q Consensus 117 ~~~k~vvV~F~a~WC~~Ck~~~p~l~---~la~~~~~-v~f~~Vd~d----------------~~~~l~~~~~V~~~Pt~ 176 (203)
..+|..++.|-.+.|..|.++...+. ++.+-+.+ +.++.+|+. ...+|++.|+|+++|||
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtf 119 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTF 119 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceE
Confidence 57899999999999999999987664 34444333 666666653 13589999999999999
Q ss_pred EEEECCCeeEEEEecCCc
Q 028819 177 RFYRGAHGRVCSFSCTNA 194 (203)
Q Consensus 177 ~~~~~g~~~v~~~~g~~~ 194 (203)
++|+.....+..+.|--+
T Consensus 120 vFfdk~Gk~Il~lPGY~p 137 (182)
T COG2143 120 VFFDKTGKTILELPGYMP 137 (182)
T ss_pred EEEcCCCCEEEecCCCCC
Confidence 999754337777777544
No 151
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.95 E-value=8.4e-05 Score=62.24 Aligned_cols=69 Identities=13% Similarity=0.157 Sum_probs=54.0
Q ss_pred CCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCC-----------cHHHHHHcCCCcccEEEEEECCCeeE
Q 028819 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-----------HKSMCYSLNVHVLPFFRFYRGAHGRV 186 (203)
Q Consensus 118 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~-----------~~~l~~~~~V~~~Pt~~~~~~g~~~v 186 (203)
.++.-|++||.+.|+.|..+.|.+..++++| ++.++.|.+|. +...+++++|..+|++++...+.+..
T Consensus 142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y-g~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTY-GLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV 220 (248)
T ss_pred HhcceEEEEECCCCchhHHHHHHHHHHHHHh-CCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence 4568899999999999999999999999998 45555555542 33467899999999999886544333
Q ss_pred E
Q 028819 187 C 187 (203)
Q Consensus 187 ~ 187 (203)
.
T Consensus 221 ~ 221 (248)
T PRK13703 221 R 221 (248)
T ss_pred E
Confidence 3
No 152
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.93 E-value=3.4e-05 Score=52.82 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=42.9
Q ss_pred EEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcH-----HHHHHcCCCcccEEEEEECCC
Q 028819 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK-----SMCYSLNVHVLPFFRFYRGAH 183 (203)
Q Consensus 123 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~-----~l~~~~~V~~~Pt~~~~~~g~ 183 (203)
++.|+++|||.|+.+.+.+.++... +.++.++.+++. .+.+..++..+|++ |.+|+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~ 62 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK---PAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGK 62 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC---cEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCE
Confidence 4779999999999999999988764 577777776542 34455788899996 45676
No 153
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.91 E-value=0.00019 Score=53.39 Aligned_cols=75 Identities=11% Similarity=0.155 Sum_probs=57.5
Q ss_pred cCCCeEEEEEECC----CChhhHHHH--HHHHHHHHhCCCcEEEEEECCC--cHHHHHHcCCCcccEEEEEE--CCC-ee
Q 028819 117 AGDKLVVVDFFSP----GCGGCKALH--PKICQLAEMNPDVQFLQVNYEE--HKSMCYSLNVHVLPFFRFYR--GAH-GR 185 (203)
Q Consensus 117 ~~~k~vvV~F~a~----WC~~Ck~~~--p~l~~la~~~~~v~f~~Vd~d~--~~~l~~~~~V~~~Pt~~~~~--~g~-~~ 185 (203)
++.|.++|++|++ ||..|+... |.+.+...+ ++.+...|++. ...++..+++.++|++.++. +++ ..
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~--~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~v 92 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT--RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMTI 92 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc--CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceEE
Confidence 6899999999999 999998774 666666653 47888888764 45688999999999999883 333 24
Q ss_pred EEEEecCC
Q 028819 186 VCSFSCTN 193 (203)
Q Consensus 186 v~~~~g~~ 193 (203)
+.++.|..
T Consensus 93 v~~i~G~~ 100 (116)
T cd02991 93 VGRLEGLI 100 (116)
T ss_pred EEEEeCCC
Confidence 66777744
No 154
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.90 E-value=6.3e-05 Score=69.85 Aligned_cols=73 Identities=16% Similarity=0.228 Sum_probs=60.2
Q ss_pred hHHHHHHHccCCCeE-EEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHHHHcCCCcccEEEEEECCC
Q 028819 108 QDLVESLWHAGDKLV-VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH 183 (203)
Q Consensus 108 ~~~~~~l~~~~~k~v-vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g~ 183 (203)
++..+.+.. =++++ +-.|.+++|+.|......+++++.+++++..-.+|..+.++++++|+|.++|++++ ||+
T Consensus 465 ~~~~~~i~~-~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~ 538 (555)
T TIGR03143 465 EELLEKIKK-ITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQ 538 (555)
T ss_pred HHHHHHHHh-cCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCceecCEEEE--CCE
Confidence 334444442 24555 44568999999999999999999999999999999999999999999999999986 665
No 155
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.90 E-value=7.2e-05 Score=48.50 Aligned_cols=54 Identities=20% Similarity=0.357 Sum_probs=41.7
Q ss_pred EEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHHH----HcCCCcccEEEEEECCC
Q 028819 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCY----SLNVHVLPFFRFYRGAH 183 (203)
Q Consensus 123 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~----~~~V~~~Pt~~~~~~g~ 183 (203)
++.|+.+||++|++....|++ .++.+-.+|++++++..+ ..+...+|++++ ||+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~-----~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~ 58 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE-----KGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGK 58 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH-----TTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTE
T ss_pred cEEEEcCCCcCHHHHHHHHHH-----cCCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCE
Confidence 567999999999999888833 248888899887654433 349999999986 664
No 156
>PRK15000 peroxidase; Provisional
Probab=97.89 E-value=7.3e-05 Score=60.68 Aligned_cols=42 Identities=17% Similarity=0.120 Sum_probs=36.5
Q ss_pred CCCeEEEEEEC-CCChhhHHHHHHHHHHHHhCC--CcEEEEEECC
Q 028819 118 GDKLVVVDFFS-PGCGGCKALHPKICQLAEMNP--DVQFLQVNYE 159 (203)
Q Consensus 118 ~~k~vvV~F~a-~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d 159 (203)
.+|++||.||+ +||+.|....+.+.++++++. ++.++.|.+|
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D 77 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFD 77 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC
Confidence 57899999999 599999999999999998875 4778888766
No 157
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.86 E-value=5.3e-05 Score=52.12 Aligned_cols=57 Identities=19% Similarity=0.326 Sum_probs=42.3
Q ss_pred CeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCc---HHHHHHcCCCcccEEEEEECCC
Q 028819 120 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH---KSMCYSLNVHVLPFFRFYRGAH 183 (203)
Q Consensus 120 k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~---~~l~~~~~V~~~Pt~~~~~~g~ 183 (203)
+.-|+.|+.+||+.|++....|++. ++.|-.+|++++ ..+.+..+...+|.+++ +|+
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~-----gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~ 66 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEK-----GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGK 66 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHc-----CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCE
Confidence 3446679999999999999888643 567777887755 34545568899999853 676
No 158
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.83 E-value=9.4e-05 Score=68.03 Aligned_cols=74 Identities=14% Similarity=0.288 Sum_probs=61.6
Q ss_pred hHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHHHHcCCCcccEEEEEECCC
Q 028819 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH 183 (203)
Q Consensus 108 ~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g~ 183 (203)
++..+.+..-.+..-+..|.++.|++|......+++++.++++|.+-.||..++++++++|+|.++|++++ ||+
T Consensus 105 ~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~ 178 (517)
T PRK15317 105 QEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNIMAVPTVFL--NGE 178 (517)
T ss_pred HHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCCcccCEEEE--CCc
Confidence 33444454323444588899999999999999999999999999999999999999999999999999965 555
No 159
>PRK13190 putative peroxiredoxin; Provisional
Probab=97.80 E-value=0.00011 Score=59.66 Aligned_cols=63 Identities=11% Similarity=0.042 Sum_probs=46.3
Q ss_pred CCCeEEE-EEECCCChhhHHHHHHHHHHHHhCC--CcEEEEEECC---------------------------CcHHHHHH
Q 028819 118 GDKLVVV-DFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYE---------------------------EHKSMCYS 167 (203)
Q Consensus 118 ~~k~vvV-~F~a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d---------------------------~~~~l~~~ 167 (203)
.++.++| .||++||+.|....+.+.++.+++. ++.++.|.+| .+..+++.
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 4566655 6899999999999999998888764 3666666554 23456677
Q ss_pred cCCC------cccEEEEEE
Q 028819 168 LNVH------VLPFFRFYR 180 (203)
Q Consensus 168 ~~V~------~~Pt~~~~~ 180 (203)
|++. .+|+.+++.
T Consensus 106 ygv~~~~~g~~~p~~fiId 124 (202)
T PRK13190 106 YNLIDENSGATVRGVFIID 124 (202)
T ss_pred cCCccccCCcEEeEEEEEC
Confidence 7874 478887774
No 160
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.78 E-value=0.00011 Score=48.26 Aligned_cols=59 Identities=17% Similarity=0.232 Sum_probs=42.4
Q ss_pred EEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHH----HHHcCCCcccEEEEEECCCeeEEEE
Q 028819 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSM----CYSLNVHVLPFFRFYRGAHGRVCSF 189 (203)
Q Consensus 123 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l----~~~~~V~~~Pt~~~~~~g~~~v~~~ 189 (203)
++.|+++||++|+.+...+.+.. +.|..+|++.+.+. .+..+...+|+++ .+|+ .+..+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-----i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~--~~~~-~igg~ 64 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-----IEFEEIDILEDGELREELKELSGWPTVPQIF--INGE-FIGGY 64 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-----CcEEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCE-EEecH
Confidence 56799999999999999888764 67778888776543 3345677888774 4665 44433
No 161
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.74 E-value=0.0002 Score=60.46 Aligned_cols=63 Identities=11% Similarity=0.033 Sum_probs=47.7
Q ss_pred CCCeEEEEEE-CCCChhhHHHHHHHHHHHHhCC--CcEEEEEECCC----------------------------cHHHHH
Q 028819 118 GDKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE----------------------------HKSMCY 166 (203)
Q Consensus 118 ~~k~vvV~F~-a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d~----------------------------~~~l~~ 166 (203)
+++++|+.|| ++||++|....|.+.++.+++. ++.++.|..|. +..+++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 4677888888 8999999999999999988874 46777776553 235667
Q ss_pred HcCCC-----cccEEEEEE
Q 028819 167 SLNVH-----VLPFFRFYR 180 (203)
Q Consensus 167 ~~~V~-----~~Pt~~~~~ 180 (203)
.||+. ..|+.+++.
T Consensus 177 ayGv~~~~g~a~R~tFIID 195 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVD 195 (261)
T ss_pred HcCCCCcCCceecEEEEEC
Confidence 77875 467777775
No 162
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.73 E-value=0.00093 Score=52.24 Aligned_cols=96 Identities=13% Similarity=0.239 Sum_probs=78.8
Q ss_pred ccccchhhhhhcCCCCeEEeCCHhHHHHHHHccCCCe-EEEEEECCCChhhHHHHHHHHHHHHhCCC-cEEEEEECCCcH
Q 028819 85 RIGKAQRWWEKGLQPNMREVASAQDLVESLWHAGDKL-VVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEEHK 162 (203)
Q Consensus 85 ~~~~~~~w~~~~~~~~~~~i~s~~~~~~~l~~~~~k~-vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~ 162 (203)
-...+.+|.....-|.+.+++.. .+.... ..+++ +++.|...-......+...+..+++++.+ +.|+.+|++..+
T Consensus 63 ~~~~l~~fI~~~~~P~v~~~t~~-n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~ 139 (184)
T PF13848_consen 63 TPEELKKFIKKNSFPLVPELTPE-NFEKLF--SSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFP 139 (184)
T ss_dssp SHHHHHHHHHHHSSTSCEEESTT-HHHHHH--STSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTH
T ss_pred CHHHHHHHHHHhccccccccchh-hHHHHh--cCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhH
Confidence 34557789999899999998865 455555 45555 88888877788888999999999999988 999999999889
Q ss_pred HHHHHcCCC--cccEEEEEECCC
Q 028819 163 SMCYSLNVH--VLPFFRFYRGAH 183 (203)
Q Consensus 163 ~l~~~~~V~--~~Pt~~~~~~g~ 183 (203)
.+.+.+++. .+|+++++....
T Consensus 140 ~~~~~~~i~~~~~P~~vi~~~~~ 162 (184)
T PF13848_consen 140 RLLKYFGIDEDDLPALVIFDSNK 162 (184)
T ss_dssp HHHHHTTTTTSSSSEEEEEETTT
T ss_pred HHHHHcCCCCccCCEEEEEECCC
Confidence 999999998 899999998444
No 163
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.71 E-value=0.00022 Score=47.99 Aligned_cols=50 Identities=14% Similarity=0.283 Sum_probs=39.6
Q ss_pred EEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHHHHc---CCCcccEEEE
Q 028819 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSL---NVHVLPFFRF 178 (203)
Q Consensus 124 V~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~---~V~~~Pt~~~ 178 (203)
..|..++|+.|+.....|++ .++.|-.+|+++++...+.+ |...+|++++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-----~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~ 54 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-----HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA 54 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCCcccCEEEE
Confidence 56888999999999988875 36888888988877665544 8889999754
No 164
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.62 E-value=0.00022 Score=59.18 Aligned_cols=64 Identities=17% Similarity=0.344 Sum_probs=47.9
Q ss_pred cCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEE----------------------------------------
Q 028819 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQV---------------------------------------- 156 (203)
Q Consensus 117 ~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~V---------------------------------------- 156 (203)
.+++.+++.|.-+.||+|+++++.+.++.+. ++.+..+
T Consensus 105 ~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~ 182 (232)
T PRK10877 105 PQEKHVITVFTDITCGYCHKLHEQMKDYNAL--GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA 182 (232)
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHHhcC--CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence 4578899999999999999999998887542 2222211
Q ss_pred ----ECCCcHHHHHHcCCCcccEEEEEECCC
Q 028819 157 ----NYEEHKSMCYSLNVHVLPFFRFYRGAH 183 (203)
Q Consensus 157 ----d~d~~~~l~~~~~V~~~Pt~~~~~~g~ 183 (203)
+++++..+++++||.++||++ +.||+
T Consensus 183 ~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~ 212 (232)
T PRK10877 183 SCDVDIADHYALGVQFGVQGTPAIV-LSNGT 212 (232)
T ss_pred cccchHHHhHHHHHHcCCccccEEE-EcCCe
Confidence 122456788999999999999 66776
No 165
>PHA03050 glutaredoxin; Provisional
Probab=97.60 E-value=0.00035 Score=51.28 Aligned_cols=59 Identities=10% Similarity=0.068 Sum_probs=40.3
Q ss_pred EEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECC-Cc----HHHHHHcCCCcccEEEEEECCC
Q 028819 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE-EH----KSMCYSLNVHVLPFFRFYRGAH 183 (203)
Q Consensus 123 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d-~~----~~l~~~~~V~~~Pt~~~~~~g~ 183 (203)
|+.|..+|||+|++....|++..-+++.+..+.||-. .. ..+.+.-|...+|+++ .+|+
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~If--I~g~ 78 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIF--FGKT 78 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEE--ECCE
Confidence 5669999999999999998887654444444444421 12 2355556888999984 3666
No 166
>PRK13599 putative peroxiredoxin; Provisional
Probab=97.56 E-value=0.00032 Score=57.56 Aligned_cols=43 Identities=9% Similarity=0.116 Sum_probs=35.6
Q ss_pred CCCe-EEEEEECCCChhhHHHHHHHHHHHHhCC--CcEEEEEECCC
Q 028819 118 GDKL-VVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE 160 (203)
Q Consensus 118 ~~k~-vvV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d~ 160 (203)
.++. ||+.||++||+.|....+.+.++.++|. ++.++.|.+|.
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~ 72 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQ 72 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3555 5789999999999999999999998874 58888887764
No 167
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.55 E-value=0.00047 Score=55.61 Aligned_cols=82 Identities=17% Similarity=0.224 Sum_probs=67.8
Q ss_pred CCeEEeCCHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHHHHcCCCcccEEEE
Q 028819 99 PNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF 178 (203)
Q Consensus 99 ~~~~~i~s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~ 178 (203)
..|.+|.-.+-..+......+-.|||+.|...-+.|+-+...+.+++..||+++|+++-....- ..|--...||+++
T Consensus 91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~cI---pNYPe~nlPTl~V 167 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTCI---PNYPESNLPTLLV 167 (240)
T ss_pred cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEeccccccc---CCCcccCCCeEEE
Confidence 4677887777666666677788999999999999999999999999999999999998754321 2344577999999
Q ss_pred EECCC
Q 028819 179 YRGAH 183 (203)
Q Consensus 179 ~~~g~ 183 (203)
|..|.
T Consensus 168 Y~~G~ 172 (240)
T KOG3170|consen 168 YHHGA 172 (240)
T ss_pred eecch
Confidence 99886
No 168
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.54 E-value=0.00038 Score=50.96 Aligned_cols=82 Identities=15% Similarity=0.120 Sum_probs=57.5
Q ss_pred HhHHHHHHHccCCCeEEEEEECCC--ChhhHHHHHHHHHHHHhCCC-cEEEEEECCCcHHHHHHcCCCcccEEEEEECCC
Q 028819 107 AQDLVESLWHAGDKLVVVDFFSPG--CGGCKALHPKICQLAEMNPD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH 183 (203)
Q Consensus 107 ~~~~~~~l~~~~~k~vvV~F~a~W--C~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g~ 183 (203)
.+++.+.+. .+...++.|..+. ++.+..+.=.+-++.+.+++ +....++-+....+..+|++...|+++++++|+
T Consensus 16 ~~~ld~~l~--~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLvf~R~g~ 93 (107)
T PF07449_consen 16 ADTLDAFLA--APGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALVFFRDGR 93 (107)
T ss_dssp CCCHHHHHH--CCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEEEEETTE
T ss_pred hhhHHHHHh--CCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEEEEECCE
Confidence 444555663 3445555444432 34455555678899999998 677777766788999999999999999999998
Q ss_pred eeEEEEec
Q 028819 184 GRVCSFSC 191 (203)
Q Consensus 184 ~~v~~~~g 191 (203)
.+..+.|
T Consensus 94 -~lG~i~g 100 (107)
T PF07449_consen 94 -YLGAIEG 100 (107)
T ss_dssp -EEEEEES
T ss_pred -EEEEecC
Confidence 6666665
No 169
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.54 E-value=0.00045 Score=63.54 Aligned_cols=74 Identities=14% Similarity=0.310 Sum_probs=61.5
Q ss_pred hHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHHHHcCCCcccEEEEEECCC
Q 028819 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH 183 (203)
Q Consensus 108 ~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g~ 183 (203)
++..+.+..-.+..-+-.|.++.|++|......+++++.++|+|..-.+|..++++++++|+|.++|++++ ||+
T Consensus 106 ~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~ 179 (515)
T TIGR03140 106 EGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGIQGVPAVFL--NGE 179 (515)
T ss_pred HHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCCcccCEEEE--CCc
Confidence 33444454323445588899999999999999999999999999999999999999999999999999975 555
No 170
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.51 E-value=0.0003 Score=56.60 Aligned_cols=62 Identities=19% Similarity=0.246 Sum_probs=45.6
Q ss_pred CCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEE--------------------------------------------
Q 028819 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQF-------------------------------------------- 153 (203)
Q Consensus 118 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f-------------------------------------------- 153 (203)
+++..++.|..+.|++|+++++.+.+. ..++.+
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~~---~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~ 152 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKPN---ADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAA 152 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhhc---cCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcc
Confidence 467899999999999999999988751 112211
Q ss_pred -EEEECCCcHHHHHHcCCCcccEEEEEECCC
Q 028819 154 -LQVNYEEHKSMCYSLNVHVLPFFRFYRGAH 183 (203)
Q Consensus 154 -~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g~ 183 (203)
...+++++..+++++||.++|+++ +.+|+
T Consensus 153 ~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~ 182 (197)
T cd03020 153 SCDNPVAANLALGRQLGVNGTPTIV-LADGR 182 (197)
T ss_pred ccCchHHHHHHHHHHcCCCcccEEE-ECCCe
Confidence 122233456788999999999997 77776
No 171
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.50 E-value=0.00077 Score=46.78 Aligned_cols=51 Identities=14% Similarity=0.229 Sum_probs=40.0
Q ss_pred EEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHH---HHcCCCcccEEEE
Q 028819 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMC---YSLNVHVLPFFRF 178 (203)
Q Consensus 123 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~---~~~~V~~~Pt~~~ 178 (203)
+..|..+||++|++....|++ .++.|-.+|++++++.. +..+...+|++++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i 56 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA 56 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE
Confidence 566889999999999988854 36889999998877643 3357789999964
No 172
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.50 E-value=0.00052 Score=56.31 Aligned_cols=43 Identities=7% Similarity=0.044 Sum_probs=35.1
Q ss_pred CCCeEE-EEEECCCChhhHHHHHHHHHHHHhCC--CcEEEEEECCC
Q 028819 118 GDKLVV-VDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE 160 (203)
Q Consensus 118 ~~k~vv-V~F~a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d~ 160 (203)
.+|+++ +.||++||+.|....+.+.++++++. ++.++.|.+|.
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds 77 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDS 77 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 355555 58899999999999999999999884 58888887763
No 173
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.47 E-value=0.00036 Score=47.61 Aligned_cols=54 Identities=15% Similarity=0.247 Sum_probs=39.3
Q ss_pred EEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHH----HHcCCCcccEEEEEECCC
Q 028819 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMC----YSLNVHVLPFFRFYRGAH 183 (203)
Q Consensus 123 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~----~~~~V~~~Pt~~~~~~g~ 183 (203)
|+.|+.+||+.|......+++. ++.|-.+|++.++... +..+...+|+++ .+|+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-----~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~--i~g~ 58 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-----GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIF--IGDV 58 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-----CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEE--ECCE
Confidence 3568899999999999888753 4666777777665443 334788899974 3665
No 174
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.47 E-value=0.00092 Score=53.99 Aligned_cols=42 Identities=14% Similarity=0.124 Sum_probs=35.8
Q ss_pred CCCeEEEEEEC-CCChhhHHHHHHHHHHHHhCC--CcEEEEEECC
Q 028819 118 GDKLVVVDFFS-PGCGGCKALHPKICQLAEMNP--DVQFLQVNYE 159 (203)
Q Consensus 118 ~~k~vvV~F~a-~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d 159 (203)
.+|+++|.||+ +||+.|....+.+.++++++. ++.++.|+.|
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d 79 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMD 79 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 46899999995 889999999999999998886 4888888766
No 175
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.47 E-value=0.00088 Score=47.22 Aligned_cols=89 Identities=19% Similarity=0.212 Sum_probs=65.6
Q ss_pred EEeCCHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCC-CcEEEEEECCCcHHHHHHcCCCcccEEEEEE
Q 028819 102 REVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR 180 (203)
Q Consensus 102 ~~i~s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~-~v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~ 180 (203)
.++++.+++...+ ..+++++|-|+.++|+ .....+.++|+.+. ++.|+.+. +..+++.+++. .|++++|+
T Consensus 2 ~~i~s~~~l~~~~--~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~-~~~i~l~~ 72 (97)
T cd02981 2 KELTSKEELEKFL--DKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVK-PGSVVLFK 72 (97)
T ss_pred eecCCHHHHHHHh--ccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCC-CCceEEeC
Confidence 4577788887766 4677899999999987 46678888998886 58998777 46777778775 58999998
Q ss_pred CCCeeEEEEecCCc--ccccc
Q 028819 181 GAHGRVCSFSCTNA--TVSTD 199 (203)
Q Consensus 181 ~g~~~v~~~~g~~~--~i~~~ 199 (203)
........|.|... .|.+|
T Consensus 73 ~~~~~~~~y~g~~~~~~l~~f 93 (97)
T cd02981 73 PFEEEPVEYDGEFTEESLVEF 93 (97)
T ss_pred CcccCCccCCCCCCHHHHHHH
Confidence 75435666887543 44444
No 176
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.44 E-value=0.00092 Score=56.13 Aligned_cols=76 Identities=16% Similarity=0.266 Sum_probs=53.4
Q ss_pred cCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEEC--------------------------------------
Q 028819 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNY-------------------------------------- 158 (203)
Q Consensus 117 ~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~-------------------------------------- 158 (203)
.+.+.+|+.|.-+.||+|+++++.+.++.+. .+|.+..+..
T Consensus 115 ~~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~-g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~ 193 (251)
T PRK11657 115 ADAPRIVYVFADPNCPYCKQFWQQARPWVDS-GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKP 193 (251)
T ss_pred CCCCeEEEEEECCCChhHHHHHHHHHHHhhc-CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCc
Confidence 3567889999999999999999988776553 2233322210
Q ss_pred ------------CCcHHHHHHcCCCcccEEEEEECCCeeEEEEecCCc
Q 028819 159 ------------EEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNA 194 (203)
Q Consensus 159 ------------d~~~~l~~~~~V~~~Pt~~~~~~g~~~v~~~~g~~~ 194 (203)
+++..+.+++||.++|++++- ||+|.+..+.|..+
T Consensus 194 ~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~-d~~G~~~~v~G~~~ 240 (251)
T PRK11657 194 PASIPAAVRKQLADNQKLMDDLGANATPAIYYM-DKDGTLQQVVGLPD 240 (251)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEE-CCCCCEEEecCCCC
Confidence 012346778999999999976 55557777888753
No 177
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.44 E-value=0.0007 Score=54.89 Aligned_cols=40 Identities=10% Similarity=0.095 Sum_probs=33.6
Q ss_pred eEEEEEECCCChhhHHHHHHHHHHHHhCC--CcEEEEEECCC
Q 028819 121 LVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE 160 (203)
Q Consensus 121 ~vvV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d~ 160 (203)
.+|+.||++||+.|....+.+.++.+++. ++.++.|.+|.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~ 69 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDS 69 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 45668999999999999999999998875 48888887663
No 178
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.42 E-value=0.00088 Score=44.95 Aligned_cols=54 Identities=13% Similarity=0.222 Sum_probs=39.8
Q ss_pred EEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHHH----HcCCC-cccEEEEEECCC
Q 028819 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCY----SLNVH-VLPFFRFYRGAH 183 (203)
Q Consensus 123 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~----~~~V~-~~Pt~~~~~~g~ 183 (203)
++.|..+||+.|......|++. ++.|..+|++.+++..+ ..+.. .+|+++ .+|+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~--i~g~ 60 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-----GVDYEEIDVDGDPALREEMINRSGGRRTVPQIF--IGDV 60 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE--ECCE
Confidence 4678999999999999888753 57788888887655443 34666 899774 4665
No 179
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.41 E-value=0.00045 Score=49.77 Aligned_cols=54 Identities=17% Similarity=0.252 Sum_probs=37.1
Q ss_pred EEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHH-------HHHHcCCCcccEEEEEECCC
Q 028819 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS-------MCYSLNVHVLPFFRFYRGAH 183 (203)
Q Consensus 123 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~-------l~~~~~V~~~Pt~~~~~~g~ 183 (203)
++.|..+|||+|++....|.+.. +.|..+|+|+.++ +.+..+...+|.+ |.+|+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~-----i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~ 70 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLG-----VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGK 70 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-----CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCE
Confidence 45599999999999998777653 4455666654432 3333467899997 45675
No 180
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.41 E-value=0.00059 Score=45.76 Aligned_cols=54 Identities=13% Similarity=0.239 Sum_probs=39.6
Q ss_pred EEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHH---HHHHcCCCcccEEEEEECCC
Q 028819 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS---MCYSLNVHVLPFFRFYRGAH 183 (203)
Q Consensus 123 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~---l~~~~~V~~~Pt~~~~~~g~ 183 (203)
++.|..+||+.|.+....|.+. ++.+..+|++++.. +.+..+...+|.++ .+|+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-----~i~~~~~~v~~~~~~~~~~~~~g~~~vP~if--i~g~ 59 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-----GISYEEIPLGKDITGRSLRAVTGAMTVPQVF--IDGE 59 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEEECCCChhHHHHHHHhCCCCcCeEE--ECCE
Confidence 5679999999999998877742 57777778776542 33345888999973 4665
No 181
>PRK13189 peroxiredoxin; Provisional
Probab=97.40 E-value=0.00092 Score=55.11 Aligned_cols=42 Identities=7% Similarity=0.064 Sum_probs=33.8
Q ss_pred CCC-eEEEEEECCCChhhHHHHHHHHHHHHhCC--CcEEEEEECC
Q 028819 118 GDK-LVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYE 159 (203)
Q Consensus 118 ~~k-~vvV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d 159 (203)
.++ .+|+.||++||+.|....+.+.++++++. ++.++.|.+|
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D 78 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSID 78 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 456 45567889999999999999999988874 4777777665
No 182
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.31 E-value=0.0015 Score=43.97 Aligned_cols=54 Identities=15% Similarity=0.285 Sum_probs=40.7
Q ss_pred EEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHH----HHHHcCCCcccEEEEEECCC
Q 028819 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS----MCYSLNVHVLPFFRFYRGAH 183 (203)
Q Consensus 123 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~----l~~~~~V~~~Pt~~~~~~g~ 183 (203)
++.|..+||+.|++....|++ .++.|-.+|+++++. +.+..+-..+|+++ .||+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-----~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~--i~~~ 60 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-----KGLPYVEINIDIFPERKAELEERTGSSVVPQIF--FNEK 60 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCE
Confidence 456899999999999988876 357788888887664 44445777889884 3665
No 183
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.19 E-value=0.0015 Score=44.92 Aligned_cols=58 Identities=22% Similarity=0.423 Sum_probs=42.7
Q ss_pred EEEEECCCChhhHHHHHHHHHHHHhCCC-cEEEEEEC--CC------------------------------cHHHHHHcC
Q 028819 123 VVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNY--EE------------------------------HKSMCYSLN 169 (203)
Q Consensus 123 vV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~--d~------------------------------~~~l~~~~~ 169 (203)
|+.|+.+.|+.|..+.+.+.++.+..++ +.+....+ .. +..++.++|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 4679999999999999999999755544 55554432 22 123567789
Q ss_pred CCcccEEEEEE
Q 028819 170 VHVLPFFRFYR 180 (203)
Q Consensus 170 V~~~Pt~~~~~ 180 (203)
+.++||+++..
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999999753
No 184
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.10 E-value=0.0016 Score=49.18 Aligned_cols=40 Identities=33% Similarity=0.712 Sum_probs=33.2
Q ss_pred CCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEE
Q 028819 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVN 157 (203)
Q Consensus 118 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd 157 (203)
+.+++|+.|+.++||+|+.+.|.+.++..+++++.+...+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~ 43 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKE 43 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEe
Confidence 4678999999999999999999999988888775554443
No 185
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.05 E-value=0.0062 Score=56.67 Aligned_cols=87 Identities=14% Similarity=0.117 Sum_probs=68.2
Q ss_pred hHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHHHHcCCCcccEEEEEE-CCCeeE
Q 028819 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYR-GAHGRV 186 (203)
Q Consensus 108 ~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~-~g~~~v 186 (203)
+++...+..-.+...++.|+.+.|..|..+...++++++.-+.+.+...|..++..++++|+|...|+|.+++ +|+..-
T Consensus 355 ~~l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~ 434 (555)
T TIGR03143 355 QQLVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTG 434 (555)
T ss_pred HHHHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccc
Confidence 3455555543455567788888999999999999999977666888888988899999999999999999995 554334
Q ss_pred EEEecCCc
Q 028819 187 CSFSCTNA 194 (203)
Q Consensus 187 ~~~~g~~~ 194 (203)
.+|.|...
T Consensus 435 i~f~g~P~ 442 (555)
T TIGR03143 435 LKFHGVPS 442 (555)
T ss_pred eEEEecCc
Confidence 67877543
No 186
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.02 E-value=0.0056 Score=43.84 Aligned_cols=57 Identities=21% Similarity=0.148 Sum_probs=39.5
Q ss_pred CeEEEEEE----CCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHH----HHcCCCcccEEEEEECCC
Q 028819 120 KLVVVDFF----SPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMC----YSLNVHVLPFFRFYRGAH 183 (203)
Q Consensus 120 k~vvV~F~----a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~----~~~~V~~~Pt~~~~~~g~ 183 (203)
++|+|+-. ++|||+|++....|.+. ++.|..+|+++++++. +..|...+|.+. .+|+
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-----~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vf--i~g~ 76 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKAC-----GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLY--VKGE 76 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEE--ECCE
Confidence 45555443 38999999999888764 4667788887665543 345677888874 4665
No 187
>PRK10824 glutaredoxin-4; Provisional
Probab=96.96 E-value=0.0041 Score=46.17 Aligned_cols=57 Identities=12% Similarity=0.187 Sum_probs=36.1
Q ss_pred CeEEEEEEC----CCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHHHH----cCCCcccEEEEEECCC
Q 028819 120 KLVVVDFFS----PGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYS----LNVHVLPFFRFYRGAH 183 (203)
Q Consensus 120 k~vvV~F~a----~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~----~~V~~~Pt~~~~~~g~ 183 (203)
.+|+|+-.+ ||||+|++....|.++. +.|..+|+++++++.+. -|...+|.+. .+|+
T Consensus 15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~-----i~~~~idi~~d~~~~~~l~~~sg~~TVPQIF--I~G~ 79 (115)
T PRK10824 15 NPILLYMKGSPKLPSCGFSAQAVQALSACG-----ERFAYVDILQNPDIRAELPKYANWPTFPQLW--VDGE 79 (115)
T ss_pred CCEEEEECCCCCCCCCchHHHHHHHHHHcC-----CCceEEEecCCHHHHHHHHHHhCCCCCCeEE--ECCE
Confidence 455554333 69999999998887763 44555666665554333 3556667654 4776
No 188
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=96.92 E-value=0.003 Score=44.50 Aligned_cols=58 Identities=22% Similarity=0.295 Sum_probs=39.7
Q ss_pred CCeEEEEEEC----CCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHH----HHHcCCCcccEEEEEECCC
Q 028819 119 DKLVVVDFFS----PGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSM----CYSLNVHVLPFFRFYRGAH 183 (203)
Q Consensus 119 ~k~vvV~F~a----~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l----~~~~~V~~~Pt~~~~~~g~ 183 (203)
+++|+|+-.+ +||++|+.....|.+.. +.|..+|+++++++ .+..+...+|.+ |.+|+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~-----i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g~ 72 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLG-----VDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YVNGE 72 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcC-----CCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EECCE
Confidence 3456554332 79999999988887653 66777777666554 344577889997 34676
No 189
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=96.85 E-value=0.004 Score=54.21 Aligned_cols=95 Identities=13% Similarity=0.185 Sum_probs=59.0
Q ss_pred CeEEeCCHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHH------HHHHHHh---CCCcEEEEEECCCcHHHHHHcCC
Q 028819 100 NMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPK------ICQLAEM---NPDVQFLQVNYEEHKSMCYSLNV 170 (203)
Q Consensus 100 ~~~~i~s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~------l~~la~~---~~~v~f~~Vd~d~~~~l~~~~~V 170 (203)
.+..++ ..+|.+.+. +.+..+|+||.+-- .-+..... +-+|+.+ -.++.|+.||..++..+++++|+
T Consensus 35 RVi~Ln-eKNfk~~lK--kyd~l~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv 110 (383)
T PF01216_consen 35 RVIDLN-EKNFKRALK--KYDVLVLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGV 110 (383)
T ss_dssp -CEEE--TTTHHHHHH--H-SEEEEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT-
T ss_pred ceEEcc-hhHHHHHHH--hhcEEEEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCc
Confidence 344444 455777774 46688888998763 33333222 2233332 34699999999999999999999
Q ss_pred CcccEEEEEECCCeeEEEEecCCc--cccccc
Q 028819 171 HVLPFFRFYRGAHGRVCSFSCTNA--TVSTDS 200 (203)
Q Consensus 171 ~~~Pt~~~~~~g~~~v~~~~g~~~--~i~~~~ 200 (203)
...+++.+|++|+ +..|.|..+ ++.+|.
T Consensus 111 ~E~~SiyVfkd~~--~IEydG~~saDtLVeFl 140 (383)
T PF01216_consen 111 EEEGSIYVFKDGE--VIEYDGERSADTLVEFL 140 (383)
T ss_dssp -STTEEEEEETTE--EEEE-S--SHHHHHHHH
T ss_pred cccCcEEEEECCc--EEEecCccCHHHHHHHH
Confidence 9999999999986 777888665 444443
No 190
>PRK10638 glutaredoxin 3; Provisional
Probab=96.85 E-value=0.005 Score=42.48 Aligned_cols=54 Identities=15% Similarity=0.193 Sum_probs=39.1
Q ss_pred EEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHH----HHHHcCCCcccEEEEEECCC
Q 028819 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKS----MCYSLNVHVLPFFRFYRGAH 183 (203)
Q Consensus 123 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~----l~~~~~V~~~Pt~~~~~~g~ 183 (203)
++.|..+||++|+...-.+++. ++.+..+|++++++ +.+..+...+|+++ .+|+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-----gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~--~~g~ 61 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-----GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIF--IDAQ 61 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCE
Confidence 4568889999999999888753 46677778876653 33445778899874 3665
No 191
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.0047 Score=42.71 Aligned_cols=54 Identities=19% Similarity=0.396 Sum_probs=38.5
Q ss_pred EEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcH-----HHHHHc-CCCcccEEEEEECCC
Q 028819 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK-----SMCYSL-NVHVLPFFRFYRGAH 183 (203)
Q Consensus 123 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~-----~l~~~~-~V~~~Pt~~~~~~g~ 183 (203)
++.|..++||+|++....|.+ .++.|..+|++++. +..++. |...+|.+++ +|+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~-----~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~ 62 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDR-----KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGK 62 (80)
T ss_pred EEEEECCCCchHHHHHHHHHH-----cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCE
Confidence 567889999999999888873 24667776766544 334444 7899999875 554
No 192
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.80 E-value=0.0059 Score=42.14 Aligned_cols=54 Identities=17% Similarity=0.386 Sum_probs=46.3
Q ss_pred EEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHHHHcCCCcccEEEE
Q 028819 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRF 178 (203)
Q Consensus 123 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~ 178 (203)
|+.|..+.|+-|......+.++..+.+ +.+-.||+++++.+..+|+. .+|.+.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~-~~l~~vDI~~d~~l~~~Y~~-~IPVl~~ 55 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP-FELEEVDIDEDPELFEKYGY-RIPVLHI 55 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST-CEEEEEETTTTHHHHHHSCT-STSEEEE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC-ceEEEEECCCCHHHHHHhcC-CCCEEEE
Confidence 678999999999999999998776653 89999999999999999995 7998664
No 193
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=96.26 E-value=0.092 Score=39.62 Aligned_cols=83 Identities=17% Similarity=0.225 Sum_probs=61.9
Q ss_pred CCeEEeCCHhHHHHHHHccCCCeEEEEEECC--CCh-hh-HHHHHHHHHHHHhCCC--cEEEEEECCCcHHHHHHcCCC-
Q 028819 99 PNMREVASAQDLVESLWHAGDKLVVVDFFSP--GCG-GC-KALHPKICQLAEMNPD--VQFLQVNYEEHKSMCYSLNVH- 171 (203)
Q Consensus 99 ~~~~~i~s~~~~~~~l~~~~~k~vvV~F~a~--WC~-~C-k~~~p~l~~la~~~~~--v~f~~Vd~d~~~~l~~~~~V~- 171 (203)
+.+.++++.+.+.+.=. +++.-+|-|.-. .|. .+ ......+.++|++|.+ +.|+.+|.+++..+.+.||+.
T Consensus 2 ~~~~~l~~~~~~~~~C~--~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~ 79 (130)
T cd02983 2 PEIIELTSEDVFEETCE--EKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGG 79 (130)
T ss_pred CceEEecCHHHHHhhcc--CCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCc
Confidence 46778888887766552 356777777532 122 23 3556788999999975 899999999999999999995
Q ss_pred -cccEEEEEECCC
Q 028819 172 -VLPFFRFYRGAH 183 (203)
Q Consensus 172 -~~Pt~~~~~~g~ 183 (203)
.+|+++++...+
T Consensus 80 ~~~P~v~i~~~~~ 92 (130)
T cd02983 80 FGYPAMVAINFRK 92 (130)
T ss_pred cCCCEEEEEeccc
Confidence 499999997654
No 194
>PTZ00062 glutaredoxin; Provisional
Probab=96.16 E-value=0.029 Score=45.73 Aligned_cols=48 Identities=17% Similarity=0.124 Sum_probs=33.7
Q ss_pred CCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHHHH----cCCCcccEEEEEECCC
Q 028819 129 PGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYS----LNVHVLPFFRFYRGAH 183 (203)
Q Consensus 129 ~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~----~~V~~~Pt~~~~~~g~ 183 (203)
|||+.|+++...|.+. ++.|..+|++++.++.+. -+...+|.+. .+|+
T Consensus 126 p~C~~C~~~k~~L~~~-----~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVf--I~G~ 177 (204)
T PTZ00062 126 PFCRFSNAVVNMLNSS-----GVKYETYNIFEDPDLREELKVYSNWPTYPQLY--VNGE 177 (204)
T ss_pred CCChhHHHHHHHHHHc-----CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEE--ECCE
Confidence 7999999988877754 477778888776655433 3555677665 4666
No 195
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=96.09 E-value=0.019 Score=51.57 Aligned_cols=54 Identities=15% Similarity=0.254 Sum_probs=40.3
Q ss_pred EEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHH---HH---------cCCCcccEEEEEECCC
Q 028819 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMC---YS---------LNVHVLPFFRFYRGAH 183 (203)
Q Consensus 123 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~---~~---------~~V~~~Pt~~~~~~g~ 183 (203)
|+.|..+|||+|++....+.+. ++.|-.+|+++++... ++ .|...+|++++ +|+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-----gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~ 69 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-----DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDV 69 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCE
Confidence 6679999999999998877763 5888888888766322 22 36788999865 554
No 196
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.031 Score=40.77 Aligned_cols=68 Identities=15% Similarity=0.245 Sum_probs=42.3
Q ss_pred CeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcH-HHHH----HcCCCcccEEEEEECCCeeEEEEecCCc
Q 028819 120 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK-SMCY----SLNVHVLPFFRFYRGAHGRVCSFSCTNA 194 (203)
Q Consensus 120 k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~-~l~~----~~~V~~~Pt~~~~~~g~~~v~~~~g~~~ 194 (203)
++| |.|..+||+.|+++...|.++ -....++.+|-+++. ++.+ --+...+|.+++ +|+ +.|..+
T Consensus 14 ~~V-VifSKs~C~~c~~~k~ll~~~---~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk-----~iGG~~ 82 (104)
T KOG1752|consen 14 NPV-VIFSKSSCPYCHRAKELLSDL---GVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGK-----FIGGAS 82 (104)
T ss_pred CCE-EEEECCcCchHHHHHHHHHhC---CCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCE-----EEcCHH
Confidence 344 449999999999987777761 123566666655433 3332 234567887654 776 456666
Q ss_pred cccc
Q 028819 195 TVST 198 (203)
Q Consensus 195 ~i~~ 198 (203)
++.+
T Consensus 83 dl~~ 86 (104)
T KOG1752|consen 83 DLMA 86 (104)
T ss_pred HHHH
Confidence 5543
No 197
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=95.49 E-value=0.03 Score=43.46 Aligned_cols=36 Identities=33% Similarity=0.646 Sum_probs=31.2
Q ss_pred CCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC-cEE
Q 028819 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQF 153 (203)
Q Consensus 118 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f 153 (203)
..++.|+.|+...||+|+.+.+.+.++.+++++ +.|
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~ 50 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKF 50 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceE
Confidence 567899999999999999999999999888764 444
No 198
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=95.36 E-value=0.052 Score=41.38 Aligned_cols=42 Identities=24% Similarity=0.503 Sum_probs=34.2
Q ss_pred cCCCeEEEEEECCCChhhHHHHHHHHHHHHhC--CC-cEEEEEEC
Q 028819 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMN--PD-VQFLQVNY 158 (203)
Q Consensus 117 ~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~--~~-v~f~~Vd~ 158 (203)
...+++|+.|+..-|++|+.+.+.+.++.+++ ++ +.|...++
T Consensus 10 ~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 10 PDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 35678899999999999999999999998887 44 77777764
No 199
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.078 Score=45.66 Aligned_cols=83 Identities=17% Similarity=0.315 Sum_probs=60.7
Q ss_pred CeEEeCCHhHHHHHHHc-cCCCeEEEEEEC----CCChhhHHHHHHHHHHHHhC----C-----CcEEEEEECCCcHHHH
Q 028819 100 NMREVASAQDLVESLWH-AGDKLVVVDFFS----PGCGGCKALHPKICQLAEMN----P-----DVQFLQVNYEEHKSMC 165 (203)
Q Consensus 100 ~~~~i~s~~~~~~~l~~-~~~k~vvV~F~a----~WC~~Ck~~~p~l~~la~~~----~-----~v~f~~Vd~d~~~~l~ 165 (203)
.+..+++ +.+...+.. ..+=.++|.|.| ..|.-|+....++.-++..+ + .+-|..||.|+.++..
T Consensus 41 ~VI~~n~-d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~F 119 (331)
T KOG2603|consen 41 GVIRMND-DKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQVF 119 (331)
T ss_pred CeEEecC-cchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHHH
Confidence 4444444 334444442 223346677776 45999999999998888753 1 1789999999999999
Q ss_pred HHcCCCcccEEEEEECCC
Q 028819 166 YSLNVHVLPFFRFYRGAH 183 (203)
Q Consensus 166 ~~~~V~~~Pt~~~~~~g~ 183 (203)
+.++++.+|++++|...+
T Consensus 120 q~l~ln~~P~l~~f~P~~ 137 (331)
T KOG2603|consen 120 QQLNLNNVPHLVLFSPAK 137 (331)
T ss_pred HHhcccCCCeEEEeCCCc
Confidence 999999999999996554
No 200
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=94.89 E-value=0.25 Score=35.83 Aligned_cols=79 Identities=15% Similarity=0.299 Sum_probs=57.2
Q ss_pred EEeCCHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC-cEEEEEECCC--cHHHHHHcCCC----ccc
Q 028819 102 REVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYEE--HKSMCYSLNVH----VLP 174 (203)
Q Consensus 102 ~~i~s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d~--~~~l~~~~~V~----~~P 174 (203)
..|.+..+|..++. -.+.|+|.|..+--. -......+.++|+...| -.+..|||.+ ...+|+++.|. --|
T Consensus 4 e~i~d~KdfKKLLR--Tr~NVLvLy~ks~k~-a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~ 80 (112)
T cd03067 4 EDISDHKDFKKLLR--TRNNVLVLYSKSAKS-AEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKP 80 (112)
T ss_pred ccccchHHHHHHHh--hcCcEEEEEecchhh-HHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCc
Confidence 45778888998885 445677777766422 23334467788888776 7888999986 77899999998 555
Q ss_pred E-EEEEECCC
Q 028819 175 F-FRFYRGAH 183 (203)
Q Consensus 175 t-~~~~~~g~ 183 (203)
. +.-|+||+
T Consensus 81 ~~LkHYKdG~ 90 (112)
T cd03067 81 VELKHYKDGD 90 (112)
T ss_pred chhhcccCCC
Confidence 4 44688887
No 201
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=94.73 E-value=0.22 Score=36.48 Aligned_cols=50 Identities=12% Similarity=0.211 Sum_probs=42.5
Q ss_pred hhhHHHHHHHHHHHHhCC-C-cEEEEEECCCcHHHHHHcCCCc----ccEEEEEEC
Q 028819 132 GGCKALHPKICQLAEMNP-D-VQFLQVNYEEHKSMCYSLNVHV----LPFFRFYRG 181 (203)
Q Consensus 132 ~~Ck~~~p~l~~la~~~~-~-v~f~~Vd~d~~~~l~~~~~V~~----~Pt~~~~~~ 181 (203)
..-..+...+.++|+++. + +.|+.+|.++.....+.||+.. .|++.++..
T Consensus 31 ~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~ 86 (111)
T cd03073 31 KGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTA 86 (111)
T ss_pred hHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeC
Confidence 444677889999999998 5 9999999998877889999985 999999763
No 202
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=94.72 E-value=0.097 Score=40.66 Aligned_cols=52 Identities=15% Similarity=0.168 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhCC-CcEEEEEECCCcHHHHHHcCCCcccEEEEEECCCeeEEEEecC
Q 028819 137 LHPKICQLAEMNP-DVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCT 192 (203)
Q Consensus 137 ~~p~l~~la~~~~-~v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g~~~v~~~~g~ 192 (203)
....+.++|+.+. ++.|+.+. +.++++.+++.. |++++|++++++...|.|.
T Consensus 8 ~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~ 60 (184)
T PF13848_consen 8 LFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGD 60 (184)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSS
T ss_pred HHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccc
Confidence 4567888898887 49999988 677999999999 9999999977678889996
No 203
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=94.69 E-value=0.31 Score=35.61 Aligned_cols=64 Identities=13% Similarity=0.116 Sum_probs=49.8
Q ss_pred cCCCeEEEEEECCCChhhHHHHHHHHHHHHh---CCC-cEEEEEECCCcHHHHHHcCCCc--ccEEEEEECC
Q 028819 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEM---NPD-VQFLQVNYEEHKSMCYSLNVHV--LPFFRFYRGA 182 (203)
Q Consensus 117 ~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~---~~~-v~f~~Vd~d~~~~l~~~~~V~~--~Pt~~~~~~g 182 (203)
..+.+..+.|+. -..-..+...+.++|++ +.+ +.|+.+|.++.....+.+|+.. +|.+.+....
T Consensus 14 ~~~~~~~~l~f~--~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i~~~~ 83 (111)
T cd03072 14 EEGLPFLILFHD--KDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIAIDSFR 83 (111)
T ss_pred cCCCCeEEEEec--chHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEEEEcch
Confidence 345555556662 22346778899999999 987 9999999998877899999997 8999988653
No 204
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=94.16 E-value=0.12 Score=40.04 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=30.6
Q ss_pred CCeEEEEEECCCChhhHHH-HHHHHHHHHhCC--Cc-EEEEEECCC
Q 028819 119 DKLVVVDFFSPGCGGCKAL-HPKICQLAEMNP--DV-QFLQVNYEE 160 (203)
Q Consensus 119 ~k~vvV~F~a~WC~~Ck~~-~p~l~~la~~~~--~v-~f~~Vd~d~ 160 (203)
+..||+.|.+.||+.|... .+.+.+..+++. ++ .++.|..|.
T Consensus 30 k~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~ 75 (155)
T cd03013 30 KKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVND 75 (155)
T ss_pred CcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCC
Confidence 3455555559999999998 898988887764 45 477776653
No 205
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=94.14 E-value=0.18 Score=39.50 Aligned_cols=43 Identities=21% Similarity=0.217 Sum_probs=33.9
Q ss_pred cCCCeEEEEEE-CCCChhhHHHHHHHHHHHHhCCC--cEEEEEECC
Q 028819 117 AGDKLVVVDFF-SPGCGGCKALHPKICQLAEMNPD--VQFLQVNYE 159 (203)
Q Consensus 117 ~~~k~vvV~F~-a~WC~~Ck~~~p~l~~la~~~~~--v~f~~Vd~d 159 (203)
-.+++||++|| .++++.|-...-.+.+...++.+ +.++.|..|
T Consensus 28 ~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~D 73 (157)
T COG1225 28 LRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPD 73 (157)
T ss_pred hcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 35779999999 78899999998888888777653 777777654
No 206
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=93.71 E-value=0.1 Score=42.21 Aligned_cols=39 Identities=18% Similarity=0.347 Sum_probs=31.4
Q ss_pred CCeEEEEEECCCChhhHHHHHHH---HHHHHhCCC-cEEEEEE
Q 028819 119 DKLVVVDFFSPGCGGCKALHPKI---CQLAEMNPD-VQFLQVN 157 (203)
Q Consensus 119 ~k~vvV~F~a~WC~~Ck~~~p~l---~~la~~~~~-v~f~~Vd 157 (203)
+++.||+|+.-.||+|..++|.+ ..+.+.+++ +.|..+.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~ 79 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYH 79 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEec
Confidence 46779999999999999999876 788888874 6665544
No 207
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=93.64 E-value=1.5 Score=31.13 Aligned_cols=75 Identities=16% Similarity=0.155 Sum_probs=48.1
Q ss_pred hHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHHHHcCCCcccEEEEEECCCeeEE
Q 028819 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVC 187 (203)
Q Consensus 108 ~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g~~~v~ 187 (203)
+++...+..-.+...++.|..+. ..|..+...++++++--+.+.+-..+.++ ..|++.+..+|+..-.
T Consensus 8 ~qL~~~f~~l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSdkI~~~~~~~~~-----------~~P~~~i~~~~~~~gI 75 (94)
T cd02974 8 QQLKAYLERLENPVELVASLDDS-EKSAELLELLEEIASLSDKITLEEDNDDE-----------RKPSFSINRPGEDTGI 75 (94)
T ss_pred HHHHHHHHhCCCCEEEEEEeCCC-cchHHHHHHHHHHHHhCCceEEEEecCCC-----------CCCEEEEecCCCcccE
Confidence 34444444323444455555544 99999999999999877666665433221 3799999887753446
Q ss_pred EEecCCc
Q 028819 188 SFSCTNA 194 (203)
Q Consensus 188 ~~~g~~~ 194 (203)
+|.|...
T Consensus 76 rF~GiP~ 82 (94)
T cd02974 76 RFAGIPM 82 (94)
T ss_pred EEEecCC
Confidence 7887653
No 208
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=93.31 E-value=0.41 Score=32.49 Aligned_cols=58 Identities=5% Similarity=-0.011 Sum_probs=46.5
Q ss_pred EEEEEECCCChhhHHHHHHHHHHHHhCC-C-cEEEEEECCCcHHHHHHcCCCcccEEEEE
Q 028819 122 VVVDFFSPGCGGCKALHPKICQLAEMNP-D-VQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179 (203)
Q Consensus 122 vvV~F~a~WC~~Ck~~~p~l~~la~~~~-~-v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~ 179 (203)
.+..|-+..-+..+.....+.++.+++- + +.+-.||+.+++++++.++|-.+||++-.
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~ 62 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVKV 62 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhhc
Confidence 3444555555888888888888887764 3 89999999999999999999999998743
No 209
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=93.01 E-value=2.9 Score=31.41 Aligned_cols=79 Identities=16% Similarity=0.230 Sum_probs=53.4
Q ss_pred HHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHH-Hh---CCCcEEEEEECC-----CcHHHHHHcCC--CcccEEE
Q 028819 109 DLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLA-EM---NPDVQFLQVNYE-----EHKSMCYSLNV--HVLPFFR 177 (203)
Q Consensus 109 ~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la-~~---~~~v~f~~Vd~d-----~~~~l~~~~~V--~~~Pt~~ 177 (203)
.|+..+ ...+.++|.|=... |--.-+..+.+++ +. -+++-++.|.+. +|.+|+++|+| +.+|.+.
T Consensus 13 tFdKvi--~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~fPv~~ 88 (126)
T PF07912_consen 13 TFDKVI--PKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDFPVIY 88 (126)
T ss_dssp HHHHHG--GGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-SEEE
T ss_pred ehhhee--ccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccCCEEE
Confidence 466666 45689999997654 2223355677777 32 346888888764 48899999999 5689999
Q ss_pred EEECCCeeEEEEec
Q 028819 178 FYRGAHGRVCSFSC 191 (203)
Q Consensus 178 ~~~~g~~~v~~~~g 191 (203)
+|.+|......|.+
T Consensus 89 LF~~~~~~pv~~p~ 102 (126)
T PF07912_consen 89 LFVGDKEEPVRYPF 102 (126)
T ss_dssp EEESSTTSEEEE-T
T ss_pred EecCCCCCCccCCc
Confidence 99966667887843
No 210
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=92.88 E-value=1.8 Score=30.79 Aligned_cols=80 Identities=14% Similarity=0.203 Sum_probs=53.9
Q ss_pred eEEeCCHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhC-CCcEEEEEECCCcHHHHHHcCCCcccEEEEE
Q 028819 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN-PDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179 (203)
Q Consensus 101 ~~~i~s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~-~~v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~ 179 (203)
+..|++.+++.+.+.. .+..++|-|+..--. .....+.++|..+ .++.|+... +..+...+++. .|.+++|
T Consensus 2 v~~i~~~~~~e~~~~~-~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~~-~~~i~l~ 73 (102)
T cd03066 2 VEIINSERELQAFENI-EDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATF---DSKVAKKLGLK-MNEVDFY 73 (102)
T ss_pred ceEcCCHHHHHHHhcc-cCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEEC---cHHHHHHcCCC-CCcEEEe
Confidence 4568888888888730 455666666665333 3456788888888 568887654 45667777765 7999999
Q ss_pred EC-CCeeEEEE
Q 028819 180 RG-AHGRVCSF 189 (203)
Q Consensus 180 ~~-g~~~v~~~ 189 (203)
++ .+ ....|
T Consensus 74 ~~~~e-~~~~y 83 (102)
T cd03066 74 EPFME-EPVTI 83 (102)
T ss_pred CCCCC-CCccc
Confidence 76 44 34457
No 211
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.78 E-value=0.39 Score=45.53 Aligned_cols=73 Identities=15% Similarity=0.245 Sum_probs=52.0
Q ss_pred HhHHHHHHHccCCCeEEEEEECCCChhhHHHH------HHHHHHHHhCCCcEEEEEECCCcHHHHHHcC--------CCc
Q 028819 107 AQDLVESLWHAGDKLVVVDFFSPGCGGCKALH------PKICQLAEMNPDVQFLQVNYEEHKSMCYSLN--------VHV 172 (203)
Q Consensus 107 ~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~------p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~--------V~~ 172 (203)
.+.|...- ..+|||+|....+||.-|..|. |.+.++..+ +..-++||-++-|++-+.|. --+
T Consensus 33 ~eAf~~A~--~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~--~FV~IKVDREERPDvD~~Ym~~~q~~tG~GG 108 (667)
T COG1331 33 EEAFAKAK--EEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE--NFVPVKVDREERPDVDSLYMNASQAITGQGG 108 (667)
T ss_pred HHHHHHHH--HhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh--CceeeeEChhhccCHHHHHHHHHHHhccCCC
Confidence 45666555 5799999999999999999997 344444433 37778899888776655543 557
Q ss_pred ccEEEEEE-CCC
Q 028819 173 LPFFRFYR-GAH 183 (203)
Q Consensus 173 ~Pt~~~~~-~g~ 183 (203)
.|--+|.. +|+
T Consensus 109 WPLtVfLTPd~k 120 (667)
T COG1331 109 WPLTVFLTPDGK 120 (667)
T ss_pred CceeEEECCCCc
Confidence 89776664 444
No 212
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=92.70 E-value=0.18 Score=41.95 Aligned_cols=58 Identities=22% Similarity=0.274 Sum_probs=44.8
Q ss_pred CeEEeCCHh--HHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC-cEEEEEECC
Q 028819 100 NMREVASAQ--DLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD-VQFLQVNYE 159 (203)
Q Consensus 100 ~~~~i~s~~--~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~-v~f~~Vd~d 159 (203)
.+..+.... .+.+.. ++++|.||+|.+-.||+=+.-.+.+++++++|.+ +.|+.|-+.
T Consensus 83 ~vv~l~g~~~~~ildf~--~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~ 143 (237)
T PF00837_consen 83 PVVTLDGQRSCRILDFA--KGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIE 143 (237)
T ss_pred ceEeeCCCcceeHHHhc--cCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHh
Confidence 444444333 234444 6899999999999999999999999999999998 678877653
No 213
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=92.68 E-value=1.4 Score=31.59 Aligned_cols=70 Identities=17% Similarity=0.193 Sum_probs=49.4
Q ss_pred eEEeCCHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhC-CCcEEEEEECCCcHHHHHHcCCCcccEEEEE
Q 028819 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN-PDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179 (203)
Q Consensus 101 ~~~i~s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~-~~v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~ 179 (203)
+.++.+.+++.+.+. .+++++|-|+..--. .....+.++|..+ .++.|+... ...+.+.+++ .|++++|
T Consensus 2 ~~~i~s~~~l~~f~~--~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~--~~~ivl~ 71 (104)
T cd03069 2 SVELRTEAEFEKFLS--DDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTS---DKQLLEKYGY--GEGVVLF 71 (104)
T ss_pred ccccCCHHHHHHHhc--cCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEC---hHHHHHhcCC--CCceEEE
Confidence 346778888888773 566667767665333 4566778888888 458997655 3567788888 7888888
Q ss_pred E
Q 028819 180 R 180 (203)
Q Consensus 180 ~ 180 (203)
+
T Consensus 72 ~ 72 (104)
T cd03069 72 R 72 (104)
T ss_pred e
Confidence 4
No 214
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=92.24 E-value=0.68 Score=35.79 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=36.9
Q ss_pred EEEEECC------CChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHH----HHcCC----CcccEEEEEECCC
Q 028819 123 VVDFFSP------GCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMC----YSLNV----HVLPFFRFYRGAH 183 (203)
Q Consensus 123 vV~F~a~------WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~----~~~~V----~~~Pt~~~~~~g~ 183 (203)
||.|.++ +|++|+.+...|+.+ +|.|..+|++.+++.. +.++- ..+|.+++ +|+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~-----~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G~ 69 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF-----RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DGR 69 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CCE
Confidence 3446666 899999998888764 4788889998765543 33443 56776653 554
No 215
>PRK09301 circadian clock protein KaiB; Provisional
Probab=90.79 E-value=0.95 Score=32.86 Aligned_cols=77 Identities=4% Similarity=-0.027 Sum_probs=58.8
Q ss_pred CCCeEEEEEECCCChhhHHHHHHHHHHHHhC-CC-cEEEEEECCCcHHHHHHcCCCcccEEEEEECCCeeEEEEecCCcc
Q 028819 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMN-PD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNAT 195 (203)
Q Consensus 118 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~-~~-v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g~~~v~~~~g~~~~ 195 (203)
....++=.|.+.--+..+.....+.++.+++ ++ +.+-.||+.+++++++.++|-.+||++-...+ .+.++.|.-++
T Consensus 4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~--P~rriiGDlsd 81 (103)
T PRK09301 4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKILPP--PVRKIIGDLSD 81 (103)
T ss_pred CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcCCC--Ccceeeccccc
Confidence 3456777788888888898888888887754 44 88889999999999999999999997744322 45556665444
Q ss_pred c
Q 028819 196 V 196 (203)
Q Consensus 196 i 196 (203)
.
T Consensus 82 ~ 82 (103)
T PRK09301 82 R 82 (103)
T ss_pred H
Confidence 3
No 216
>PHA03075 glutaredoxin-like protein; Provisional
Probab=90.78 E-value=0.46 Score=35.19 Aligned_cols=29 Identities=21% Similarity=0.417 Sum_probs=26.3
Q ss_pred CeEEEEEECCCChhhHHHHHHHHHHHHhC
Q 028819 120 KLVVVDFFSPGCGGCKALHPKICQLAEMN 148 (203)
Q Consensus 120 k~vvV~F~a~WC~~Ck~~~p~l~~la~~~ 148 (203)
|.+++.|.-|-|+-|+.....+.++..+|
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY 30 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY 30 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc
Confidence 56899999999999999999998888876
No 217
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=90.55 E-value=1 Score=31.68 Aligned_cols=75 Identities=5% Similarity=-0.021 Sum_probs=56.6
Q ss_pred CeEEEEEECCCChhhHHHHHHHHHHHHhC-CC-cEEEEEECCCcHHHHHHcCCCcccEEEEEECCCeeEEEEecCCccc
Q 028819 120 KLVVVDFFSPGCGGCKALHPKICQLAEMN-PD-VQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNATV 196 (203)
Q Consensus 120 k~vvV~F~a~WC~~Ck~~~p~l~~la~~~-~~-v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g~~~v~~~~g~~~~i 196 (203)
..++=.|.+.--+..+.....+.++.+++ ++ +.+-.||+.+++++++.++|-++||++-...+ .+.++.|.-++.
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~--P~rriiGdls~~ 79 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKILPP--PVRKIIGDLSDR 79 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhcCCC--Ccceeeccccch
Confidence 34555677777888888888888887754 44 88889999999999999999999998754332 455666655443
No 218
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=89.79 E-value=1.4 Score=28.93 Aligned_cols=51 Identities=10% Similarity=0.069 Sum_probs=34.0
Q ss_pred EEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCC-cHHHHHHcCCCcccEEE
Q 028819 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-HKSMCYSLNVHVLPFFR 177 (203)
Q Consensus 124 V~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~-~~~l~~~~~V~~~Pt~~ 177 (203)
+.|+.+||+.|.+..-.+++..-. +.+..+|... ..++.+......+|++.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~---~e~~~v~~~~~~~~~~~~np~~~vP~L~ 53 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGIT---VELREVELKNKPAEMLAASPKGTVPVLV 53 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCC---cEEEEeCCCCCCHHHHHHCCCCCCCEEE
Confidence 357889999999987666554333 4555666433 34555555677899986
No 219
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=89.32 E-value=0.52 Score=33.77 Aligned_cols=32 Identities=9% Similarity=0.289 Sum_probs=23.6
Q ss_pred EEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCC
Q 028819 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160 (203)
Q Consensus 124 V~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~ 160 (203)
..|+.++|+.|+.....+++. ++.|-.+|+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~ 33 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH-----GIEYEFIDYLK 33 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCCcEEEeecc
Confidence 468999999999988766653 45566666644
No 220
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=87.79 E-value=8.4 Score=27.77 Aligned_cols=84 Identities=14% Similarity=0.175 Sum_probs=54.3
Q ss_pred eEEeCCHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhC-CCcEEEEEECCCcHHHHHHcCCCcccEEEEE
Q 028819 101 MREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN-PDVQFLQVNYEEHKSMCYSLNVHVLPFFRFY 179 (203)
Q Consensus 101 ~~~i~s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~-~~v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~ 179 (203)
+.++.+.+++...+.. .++.++|-|+..--+ .....+.++|..+ .++.|+... +..+.+.+++. .|.+++|
T Consensus 2 v~~i~s~~ele~f~~~-~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~---~~~~~~~~~~~-~~~vvl~ 73 (107)
T cd03068 2 SKQLQTLKQVQEFLRD-GDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTF---DSEIFKSLKVS-PGQLVVF 73 (107)
T ss_pred ceEcCCHHHHHHHHhc-CCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEC---hHHHHHhcCCC-CCceEEE
Confidence 4578888888887742 325666666655333 3556788888888 458997655 35677788876 5677777
Q ss_pred ECC------CeeEEEEecC
Q 028819 180 RGA------HGRVCSFSCT 192 (203)
Q Consensus 180 ~~g------~~~v~~~~g~ 192 (203)
+.. +.....|.|.
T Consensus 74 rp~~~~~k~e~~~~~~~~~ 92 (107)
T cd03068 74 QPEKFQSKYEPKSHVLNKK 92 (107)
T ss_pred CcHHHhhhcCcceeeeecc
Confidence 322 2245556655
No 221
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=87.76 E-value=1.3 Score=32.48 Aligned_cols=34 Identities=18% Similarity=0.347 Sum_probs=25.5
Q ss_pred EEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcH
Q 028819 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK 162 (203)
Q Consensus 124 V~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~ 162 (203)
..|+.++|+.|++....+++ .++.|-.+|+.+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-----~~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA-----NGIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH-----cCCceEEEecCCCh
Confidence 35889999999998877766 35677777776543
No 222
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=86.34 E-value=0.18 Score=43.40 Aligned_cols=70 Identities=16% Similarity=0.254 Sum_probs=53.1
Q ss_pred HHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEEC-CCcHHHHHHcCCCcccEEEEEE
Q 028819 111 VESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNY-EEHKSMCYSLNVHVLPFFRFYR 180 (203)
Q Consensus 111 ~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~-d~~~~l~~~~~V~~~Pt~~~~~ 180 (203)
.+.+-.++.-+|=+.||+.|||.-+..+|.++-....|+.+....++- ..-+.+..++++.+.|++.+..
T Consensus 68 ~~~ih~n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n 138 (319)
T KOG2640|consen 68 LDAIHGNKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFAVEESQALPSVFSSYGIHSEPSNLMLN 138 (319)
T ss_pred HHhhccccCCcccccchhcccCcccccCcccchhhhhccccccccHHHHhhcccchhccccccCCcceeec
Confidence 333433446688899999999999999999999888887655555441 2356678899999999998763
No 223
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=86.08 E-value=3.3 Score=34.84 Aligned_cols=57 Identities=16% Similarity=0.131 Sum_probs=39.6
Q ss_pred cCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHHHHcC-CCcccEEEEEE
Q 028819 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLN-VHVLPFFRFYR 180 (203)
Q Consensus 117 ~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~-V~~~Pt~~~~~ 180 (203)
.++|+.+++..+.|||.|...+=.+-..-.+|.++.+. -+..+. .+ --.+||+.|..
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~~l~-~~~S~~------~d~~pn~Ptl~F~~ 113 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNFSLE-YHYSDP------YDNYPNTPTLIFNN 113 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhcCCeeeE-EeecCc------ccCCCCCCeEEEec
Confidence 67999999999999999999886666666677766222 221211 11 24689988764
No 224
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=85.92 E-value=6.9 Score=36.04 Aligned_cols=75 Identities=11% Similarity=0.067 Sum_probs=51.2
Q ss_pred hHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHHHHcCCCcccEEEEEECCCeeEE
Q 028819 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVC 187 (203)
Q Consensus 108 ~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g~~~v~ 187 (203)
+++...+. .=.++|-+.++.+.|..|..+...++++++.-+.+.+-..+.+ ...|++.+..+|+..-.
T Consensus 8 ~~l~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~~~-----------~~~p~~~~~~~~~~~~i 75 (517)
T PRK15317 8 TQLKQYLE-LLERPIELVASLDDSEKSAELKELLEEIASLSDKITVEEDSLD-----------VRKPSFSITRPGEDTGV 75 (517)
T ss_pred HHHHHHHH-hCCCCEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEccCC-----------CCCCEEEEEcCCccceE
Confidence 34444444 2345666666666899999999999999988776766443211 24799999887764557
Q ss_pred EEecCCc
Q 028819 188 SFSCTNA 194 (203)
Q Consensus 188 ~~~g~~~ 194 (203)
+|.|...
T Consensus 76 ~f~g~P~ 82 (517)
T PRK15317 76 RFAGIPM 82 (517)
T ss_pred EEEecCc
Confidence 7877653
No 225
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=85.54 E-value=1.7 Score=32.65 Aligned_cols=33 Identities=27% Similarity=0.478 Sum_probs=23.6
Q ss_pred EEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCC
Q 028819 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160 (203)
Q Consensus 123 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~ 160 (203)
+..|+.++|+.|+.....+++- ++.|-.+|+.+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~-----gi~~~~idi~~ 34 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH-----DIPFTERNIFS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCcEEeeccC
Confidence 4568899999999987666543 45666666544
No 226
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=85.25 E-value=1.5 Score=31.86 Aligned_cols=32 Identities=16% Similarity=0.347 Sum_probs=24.1
Q ss_pred EEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCC
Q 028819 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160 (203)
Q Consensus 124 V~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~ 160 (203)
..|+.++|+.|++....+++- ++.|-.+|+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~ 33 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH-----GVDYTAIDIVE 33 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCceEEecccC
Confidence 468899999999988666652 56777777654
No 227
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=85.13 E-value=2 Score=28.00 Aligned_cols=50 Identities=8% Similarity=0.104 Sum_probs=28.8
Q ss_pred EEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHHHHcCCCcccEEE
Q 028819 125 DFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFR 177 (203)
Q Consensus 125 ~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~V~~~Pt~~ 177 (203)
.++.++|+.|++.+-.+....-. +....++.++.....+..+-..+|++.
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl~---~~~~~~~~~~~~~~~~~~~~~~vP~L~ 52 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNIP---VEQIILQNDDEATPIRMIGAKQVPILE 52 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCCC---eEEEECCCCchHHHHHhcCCCccCEEE
Confidence 46788999999887666554332 233334433332323334445688875
No 228
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=84.54 E-value=2.7 Score=27.82 Aligned_cols=51 Identities=12% Similarity=0.174 Sum_probs=30.7
Q ss_pred EEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCC--cHHHHHHcCCCcccEEEEE
Q 028819 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE--HKSMCYSLNVHVLPFFRFY 179 (203)
Q Consensus 123 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~--~~~l~~~~~V~~~Pt~~~~ 179 (203)
+..|+.+.|+.|++.+-.+.+.. +.|-.++.+. ..++ +.-+-..+|+++.=
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~g-----i~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~ 54 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHG-----IPYEVVEVNPVSRKEI-KWSSYKKVPILRVE 54 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCC-----CceEEEECCchhHHHH-HHhCCCccCEEEEC
Confidence 34577889999999886555443 3333344332 2233 33455689988753
No 229
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=84.21 E-value=4.7 Score=29.57 Aligned_cols=21 Identities=14% Similarity=0.328 Sum_probs=19.4
Q ss_pred cHHHHHHcCCCcccEEEEEEC
Q 028819 161 HKSMCYSLNVHVLPFFRFYRG 181 (203)
Q Consensus 161 ~~~l~~~~~V~~~Pt~~~~~~ 181 (203)
+|.+.++|+|+.+|++++-++
T Consensus 60 dP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 60 DPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred ChhHHhhCCceEcCEEEEEcC
Confidence 499999999999999999877
No 230
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=84.20 E-value=1.4 Score=31.87 Aligned_cols=32 Identities=13% Similarity=0.148 Sum_probs=22.9
Q ss_pred EEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCC
Q 028819 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160 (203)
Q Consensus 124 V~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~ 160 (203)
..|+.++|+.|+.....+++- ++.|-.+|+.+
T Consensus 2 ~iy~~~~C~~crka~~~L~~~-----~i~~~~~di~~ 33 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR-----GVAYTFHDYRK 33 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-----CCCeEEEeccc
Confidence 568999999999987666553 45555666543
No 231
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=84.03 E-value=2.6 Score=27.20 Aligned_cols=52 Identities=8% Similarity=0.064 Sum_probs=33.5
Q ss_pred EEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECC----CcHHHHHHcCCCcccEEEE
Q 028819 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE----EHKSMCYSLNVHVLPFFRF 178 (203)
Q Consensus 124 V~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d----~~~~l~~~~~V~~~Pt~~~ 178 (203)
..|+.++|+.|++++-.+....-.| ....++.. ..+++.+...-..+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~~---~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGIDV---PLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCCc---eEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 3577889999999987776664333 44445432 2344555555668899874
No 232
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=83.61 E-value=1.4 Score=27.54 Aligned_cols=51 Identities=10% Similarity=0.116 Sum_probs=32.0
Q ss_pred EEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcH--HHHHHcCCCcccEEEE
Q 028819 125 DFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHK--SMCYSLNVHVLPFFRF 178 (203)
Q Consensus 125 ~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~--~l~~~~~V~~~Pt~~~ 178 (203)
.|+.++|+.|.+..-.++...-. +....++.++.. .+.+...-..+|++..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGLP---YELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCCC---cEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 57788999999888776665333 344445443322 2445566778898763
No 233
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=83.20 E-value=12 Score=34.44 Aligned_cols=76 Identities=14% Similarity=0.118 Sum_probs=51.0
Q ss_pred hHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHHHHcCCCcccEEEEEECCCeeEE
Q 028819 108 QDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRVC 187 (203)
Q Consensus 108 ~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g~~~v~ 187 (203)
+++.+.+.. =.++|-+.++.+-|..|..+...++++++.-+.+.+...+.++ ...|++.+..+|+..-.
T Consensus 8 ~~l~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~ki~~~~~~~~~----------~~~p~~~~~~~~~~~~i 76 (515)
T TIGR03140 8 AQLKSYLAS-LENPVTLVLSAGSHEKSKELLELLDEIASLSDKISLTQNTADT----------LRKPSFTILRDGADTGI 76 (515)
T ss_pred HHHHHHHHh-cCCCEEEEEEeCCCchhHHHHHHHHHHHHhCCCeEEEEecCCc----------CCCCeEEEecCCcccce
Confidence 344445543 3445656555557999999999999999887767765444221 34699999887764456
Q ss_pred EEecCCc
Q 028819 188 SFSCTNA 194 (203)
Q Consensus 188 ~~~g~~~ 194 (203)
+|.|...
T Consensus 77 ~f~g~P~ 83 (515)
T TIGR03140 77 RFAGIPG 83 (515)
T ss_pred EEEecCC
Confidence 7777543
No 234
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=83.19 E-value=2.4 Score=35.30 Aligned_cols=46 Identities=20% Similarity=0.358 Sum_probs=38.3
Q ss_pred HHccCCCeEEEEEECCCChhhHHHHHHHHHHHHh-----CCCcEEEEEECC
Q 028819 114 LWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEM-----NPDVQFLQVNYE 159 (203)
Q Consensus 114 l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~-----~~~v~f~~Vd~d 159 (203)
+.+..++++||-+-..+|..|..-...++.|..+ +++|.|+.||-.
T Consensus 21 m~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 21 MLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred hhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 3446789999999999999999988888888743 567999999954
No 235
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=80.72 E-value=0.63 Score=32.38 Aligned_cols=50 Identities=8% Similarity=0.041 Sum_probs=40.8
Q ss_pred CCCChhhHHHHHHHHHHHHhC-CC-cEEEEEECCCcHHHHHHcCCCcccEEE
Q 028819 128 SPGCGGCKALHPKICQLAEMN-PD-VQFLQVNYEEHKSMCYSLNVHVLPFFR 177 (203)
Q Consensus 128 a~WC~~Ck~~~p~l~~la~~~-~~-v~f~~Vd~d~~~~l~~~~~V~~~Pt~~ 177 (203)
+..-+..+.....+..+.+++ ++ +.+-.||+.+++++++.++|-.+||++
T Consensus 5 ~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 5 AGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLI 56 (82)
T ss_dssp SSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEe
Confidence 444456677778888888764 33 899999999999999999999999976
No 236
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=80.10 E-value=5 Score=29.24 Aligned_cols=33 Identities=18% Similarity=0.412 Sum_probs=23.5
Q ss_pred EEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCC
Q 028819 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160 (203)
Q Consensus 123 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~ 160 (203)
+..|+.++|+.|++....+++. ++.|-.+|+.+
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~-----gi~~~~idi~~ 34 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH-----QIPFEERNLFK 34 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCceEEEecCC
Confidence 3468889999999988777653 45566666543
No 237
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=79.60 E-value=4 Score=32.22 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=21.8
Q ss_pred EEECCCChhhHHHHHHHHHHHHhCCC
Q 028819 125 DFFSPGCGGCKALHPKICQLAEMNPD 150 (203)
Q Consensus 125 ~F~a~WC~~Ck~~~p~l~~la~~~~~ 150 (203)
+|..|.|+.|-...|.+.++..++++
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~ 27 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGN 27 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-T
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCC
Confidence 68999999999999999999999986
No 238
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=78.81 E-value=7.3 Score=25.26 Aligned_cols=51 Identities=18% Similarity=0.243 Sum_probs=33.0
Q ss_pred EEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCC----cHHHHHHcCCCcccEEE
Q 028819 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE----HKSMCYSLNVHVLPFFR 177 (203)
Q Consensus 124 V~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~----~~~l~~~~~V~~~Pt~~ 177 (203)
..|+.++|+.|++..-.+++..-. +....+|..+ .+++.+......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~---~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLE---LNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCC---CEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 357889999999877666665433 3444555422 34555555566899996
No 239
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=78.47 E-value=6.3 Score=25.46 Aligned_cols=51 Identities=8% Similarity=0.068 Sum_probs=31.4
Q ss_pred EEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCC-cHHHHHHcCCCcccEEE
Q 028819 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-HKSMCYSLNVHVLPFFR 177 (203)
Q Consensus 124 V~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~-~~~l~~~~~V~~~Pt~~ 177 (203)
..|+.++|+.|++..-.++...-. +....+|.+. .+++.+......+|++.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~vP~l~ 53 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVS---VEIIDVDPDNPPEDLAELNPYGTVPTLV 53 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCc---cEEEEcCCCCCCHHHHhhCCCCCCCEEE
Confidence 457889999999987666544333 2333444433 33454545566889774
No 240
>PRK12559 transcriptional regulator Spx; Provisional
Probab=77.83 E-value=4.1 Score=30.67 Aligned_cols=32 Identities=16% Similarity=0.404 Sum_probs=22.4
Q ss_pred EEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECC
Q 028819 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE 159 (203)
Q Consensus 123 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d 159 (203)
+..|+.++|+.|+.....+++- ++.|-.+|+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----gi~~~~~di~ 33 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN-----QIDYTEKNIV 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCeEEEEee
Confidence 4578899999999977665543 4555555554
No 241
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=77.49 E-value=12 Score=33.55 Aligned_cols=75 Identities=15% Similarity=0.311 Sum_probs=60.4
Q ss_pred HhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHHHHcCCCcccEEEEEECCC
Q 028819 107 AQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAH 183 (203)
Q Consensus 107 ~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~g~ 183 (203)
.++..+.+..-.+..-+=-|++-.|..|-.+-..++-++--+|++....||..-.++-.+.-+|.++||+++ ||+
T Consensus 104 ~q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa~Fq~Evear~IMaVPtvfl--nGe 178 (520)
T COG3634 104 DQDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGALFQDEVEARNIMAVPTVFL--NGE 178 (520)
T ss_pred hHHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecchhhHhHHHhccceecceEEE--cch
Confidence 355666666556667777788888999999999999999999999999999877666667779999999764 665
No 242
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=77.34 E-value=6.2 Score=30.96 Aligned_cols=42 Identities=29% Similarity=0.405 Sum_probs=30.9
Q ss_pred CCCeEEEEEECCCC-hhhHHHHHHHHHHHHhC----CCcEEEEEECC
Q 028819 118 GDKLVVVDFFSPGC-GGCKALHPKICQLAEMN----PDVQFLQVNYE 159 (203)
Q Consensus 118 ~~k~vvV~F~a~WC-~~Ck~~~p~l~~la~~~----~~v~f~~Vd~d 159 (203)
.+|+++|+|.-+.| ..|-.+...+.++.+.. .+++++.|.+|
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD 97 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD 97 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC
Confidence 68999999999999 57887777776665432 34778777776
No 243
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=75.61 E-value=6.7 Score=33.21 Aligned_cols=79 Identities=18% Similarity=0.230 Sum_probs=50.0
Q ss_pred CCCeEEEEEECCCChh-hHHHHHHHHHHHHhC---CC-c---EEEEEECC--------------------------CcHH
Q 028819 118 GDKLVVVDFFSPGCGG-CKALHPKICQLAEMN---PD-V---QFLQVNYE--------------------------EHKS 163 (203)
Q Consensus 118 ~~k~vvV~F~a~WC~~-Ck~~~p~l~~la~~~---~~-v---~f~~Vd~d--------------------------~~~~ 163 (203)
.+|.+++||.-+.||. |=.....+.++..+. ++ . .|+.||=+ +-..
T Consensus 138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~ 217 (280)
T KOG2792|consen 138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQ 217 (280)
T ss_pred ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHH
Confidence 5899999999999974 655554444443322 23 2 68888742 2345
Q ss_pred HHHHcCCCccc-------------EEEEE-ECCCeeEEEEecCCccc
Q 028819 164 MCYSLNVHVLP-------------FFRFY-RGAHGRVCSFSCTNATV 196 (203)
Q Consensus 164 l~~~~~V~~~P-------------t~~~~-~~g~~~v~~~~g~~~~i 196 (203)
+|+.|.|.--+ ++++| .|.+|....+-|.|.+.
T Consensus 218 vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~ 264 (280)
T KOG2792|consen 218 VAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDA 264 (280)
T ss_pred HHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCH
Confidence 77777765433 34444 56677788888877654
No 244
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=74.75 E-value=6 Score=26.33 Aligned_cols=49 Identities=8% Similarity=0.120 Sum_probs=29.9
Q ss_pred EEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCc----HHHHHHcCCCcccEEE
Q 028819 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH----KSMCYSLNVHVLPFFR 177 (203)
Q Consensus 124 V~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~----~~l~~~~~V~~~Pt~~ 177 (203)
..++.++|+.|++.+-.+.+.. +.|-.++++.. .++.+.-.-..+|+++
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~g-----i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~ 55 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTELE-----LDVILYPCPKGSPKRDKFLEKGGKVQVPYLV 55 (77)
T ss_pred eEecCCCCchHHHHHHHHHHcC-----CcEEEEECCCChHHHHHHHHhCCCCcccEEE
Confidence 4567789999998876665543 44444454432 2333333456789875
No 245
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=73.08 E-value=6 Score=30.74 Aligned_cols=31 Identities=29% Similarity=0.489 Sum_probs=26.7
Q ss_pred EEEEEECCCChhhHHHHHHHHHHHHhCCCcE
Q 028819 122 VVVDFFSPGCGGCKALHPKICQLAEMNPDVQ 152 (203)
Q Consensus 122 vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~ 152 (203)
.|..|+..-||.|-...+.+.++.++++++.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~ 31 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVE 31 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCE
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCc
Confidence 3678899999999999999999999986633
No 246
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=72.81 E-value=14 Score=25.38 Aligned_cols=53 Identities=6% Similarity=0.012 Sum_probs=33.0
Q ss_pred EEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCc-HHHHHHcCCCcccEEEE
Q 028819 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH-KSMCYSLNVHVLPFFRF 178 (203)
Q Consensus 123 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~-~~l~~~~~V~~~Pt~~~ 178 (203)
+..|+.+.|+.|+++.-.+....-. +.+..++.... ..+.+......+|.+..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl~---~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNIP---HEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCC---CeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 4446788899999877655554322 45555654433 33555555678899874
No 247
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=71.88 E-value=6 Score=29.92 Aligned_cols=23 Identities=9% Similarity=0.232 Sum_probs=20.6
Q ss_pred cHHHHHHcCCCcccEEEEEECCC
Q 028819 161 HKSMCYSLNVHVLPFFRFYRGAH 183 (203)
Q Consensus 161 ~~~l~~~~~V~~~Pt~~~~~~g~ 183 (203)
+|.+.++|+|+.+|+|++.+++.
T Consensus 60 dP~lF~~f~I~~VPa~V~~~~~~ 82 (130)
T TIGR02742 60 DPQWFKQFDITAVPAFVVVKDGL 82 (130)
T ss_pred ChHHHhhcCceEcCEEEEECCCC
Confidence 59999999999999999998763
No 248
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=71.54 E-value=8.1 Score=31.58 Aligned_cols=38 Identities=24% Similarity=0.409 Sum_probs=29.4
Q ss_pred CCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEE
Q 028819 119 DKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQV 156 (203)
Q Consensus 119 ~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~V 156 (203)
.+.+++.|...-|++|+...|.+.+.....+++++...
T Consensus 84 ~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~~~~~~ 121 (244)
T COG1651 84 APVTVVEFFDYTCPYCKEAFPELKKKYIDDGKVRLVLR 121 (244)
T ss_pred CCceEEEEecCcCccHHHHHHHHHHHhhhcCCCceEEE
Confidence 47889999999999999999998887666666544433
No 249
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=71.12 E-value=14 Score=28.43 Aligned_cols=45 Identities=18% Similarity=0.351 Sum_probs=34.2
Q ss_pred EEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHHHHcCCC
Q 028819 122 VVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH 171 (203)
Q Consensus 122 vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~V~ 171 (203)
-++.|+.|.||=|......++ -.++.+-.+..++...+.++++|.
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk-----~~Gf~Vk~~~~~d~~alK~~~gIp 71 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMK-----ANGFEVKVVETDDFLALKRRLGIP 71 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHH-----hCCcEEEEeecCcHHHHHHhcCCC
Confidence 467799999999998776665 135677777777777787887765
No 250
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=70.00 E-value=28 Score=28.19 Aligned_cols=63 Identities=16% Similarity=0.124 Sum_probs=42.1
Q ss_pred CCCeEEEEEECCCCh-hhHHHHHHHHHHHHhCC-----CcEEEEEECC---CcHHHHHHcCC-CcccEEEEEE
Q 028819 118 GDKLVVVDFFSPGCG-GCKALHPKICQLAEMNP-----DVQFLQVNYE---EHKSMCYSLNV-HVLPFFRFYR 180 (203)
Q Consensus 118 ~~k~vvV~F~a~WC~-~Ck~~~p~l~~la~~~~-----~v~f~~Vd~d---~~~~l~~~~~V-~~~Pt~~~~~ 180 (203)
.+++++|+|.-+.|+ .|-.+...+.++.++.. +++++-|-+| +.++..++|.. ...|-+....
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~~lt 138 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWIGLT 138 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCeeeee
Confidence 789999999988885 68888887777766543 2555544444 24566666766 5555555443
No 251
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=69.10 E-value=11 Score=25.94 Aligned_cols=56 Identities=14% Similarity=0.132 Sum_probs=34.8
Q ss_pred EEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEEC------------CCcHHH--HHHcCCCcccEEEEEECCC
Q 028819 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNY------------EEHKSM--CYSLNVHVLPFFRFYRGAH 183 (203)
Q Consensus 124 V~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~------------d~~~~l--~~~~~V~~~Pt~~~~~~g~ 183 (203)
+.|++..||.|......++++.-.| .++.|-. |..+++ .+..|--++|.+++ .||+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~y---d~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~-~d~~ 74 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDY---DFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT-DDGK 74 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCc---eeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe-CCCc
Confidence 5699999999987766666554332 2322221 223332 35577888999875 4666
No 252
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=66.85 E-value=27 Score=22.86 Aligned_cols=53 Identities=11% Similarity=0.095 Sum_probs=36.0
Q ss_pred EECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCC-cHHHHHHcCCCcccEEEEEECCC
Q 028819 126 FFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-HKSMCYSLNVHVLPFFRFYRGAH 183 (203)
Q Consensus 126 F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~-~~~l~~~~~V~~~Pt~~~~~~g~ 183 (203)
++.++|+.|+++.-.++...- ++.+..++..+ ...+.+...-..+|++. .+|.
T Consensus 2 y~~~~Sp~~~kv~~~l~~~~i---~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~ 55 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEEKGI---PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGE 55 (75)
T ss_dssp EEETTSHHHHHHHHHHHHHTE---EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTE
T ss_pred CCcCCChHHHHHHHHHHHcCC---eEEEeccCcccchhHHHhhcccccceEEE--ECCE
Confidence 678999999998755554432 24666666554 35566666777899997 4554
No 253
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=66.79 E-value=5.9 Score=30.79 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=22.1
Q ss_pred cHHHHHHcCCCcccEEEEEECCCeeEEEEecCCc
Q 028819 161 HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNA 194 (203)
Q Consensus 161 ~~~l~~~~~V~~~Pt~~~~~~g~~~v~~~~g~~~ 194 (203)
+...+.++||.++||+++ ||+ ..+.|.+.
T Consensus 156 ~~~~a~~~gv~GvP~~vv--~g~---~~~~G~~~ 184 (193)
T PF01323_consen 156 DTAEARQLGVFGVPTFVV--NGK---YRFFGADR 184 (193)
T ss_dssp HHHHHHHTTCSSSSEEEE--TTT---EEEESCSS
T ss_pred HHHHHHHcCCcccCEEEE--CCE---EEEECCCC
Confidence 455678899999999999 665 55677654
No 254
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=65.19 E-value=12 Score=28.16 Aligned_cols=32 Identities=13% Similarity=0.300 Sum_probs=22.2
Q ss_pred EEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECC
Q 028819 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE 159 (203)
Q Consensus 123 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d 159 (203)
+..|+.++|+.|+.....+++- ++.|-.+|+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----~i~~~~~d~~ 33 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH-----QLSYKEQNLG 33 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc-----CCCeEEEECC
Confidence 4467889999999977555442 4566666654
No 255
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=63.90 E-value=6.2 Score=31.08 Aligned_cols=20 Identities=5% Similarity=0.340 Sum_probs=16.4
Q ss_pred cHHHHHHcCCCcccEEEEEE
Q 028819 161 HKSMCYSLNVHVLPFFRFYR 180 (203)
Q Consensus 161 ~~~l~~~~~V~~~Pt~~~~~ 180 (203)
+..++++++|+++||++++.
T Consensus 136 D~~la~~m~I~~~Ptlvi~~ 155 (176)
T PF13743_consen 136 DQQLAREMGITGFPTLVIFN 155 (176)
T ss_dssp HHHHHHHTT-SSSSEEEEE-
T ss_pred HHHHHHHcCCCCCCEEEEEe
Confidence 56789999999999999997
No 256
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=62.45 E-value=25 Score=25.51 Aligned_cols=52 Identities=19% Similarity=0.274 Sum_probs=37.1
Q ss_pred CCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHHHHcC-CCcccEEE-EEECCC
Q 028819 128 SPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLN-VHVLPFFR-FYRGAH 183 (203)
Q Consensus 128 a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~-V~~~Pt~~-~~~~g~ 183 (203)
.|-||...+....+..... +.|..+|+=.++++.+.+. ...+|||- +|-+|+
T Consensus 27 ~P~CGFS~~~vqiL~~~g~----v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GE 80 (105)
T COG0278 27 FPQCGFSAQAVQILSACGV----VDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGE 80 (105)
T ss_pred CCCCCccHHHHHHHHHcCC----cceeEEeeccCHHHHhccHhhcCCCCCceeeECCE
Confidence 4677777776655544322 7899999988888877654 34688875 788887
No 257
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=62.01 E-value=13 Score=26.57 Aligned_cols=57 Identities=11% Similarity=0.182 Sum_probs=36.1
Q ss_pred EECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHHHHcCCC--cccEEEEE-ECCC
Q 028819 126 FFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLNVH--VLPFFRFY-RGAH 183 (203)
Q Consensus 126 F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~V~--~~Pt~~~~-~~g~ 183 (203)
||-.+|+-|......+.... ....+.|+.+.-+...++.+.+++. ..-+.+.. .+|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRD-RGGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhcC-CCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 78899999999888777772 2234777776434444555666654 34444443 4554
No 258
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=59.63 E-value=13 Score=28.92 Aligned_cols=27 Identities=30% Similarity=0.556 Sum_probs=24.4
Q ss_pred EEEEECCCChhhHHHHHHHHHHHHhCC
Q 028819 123 VVDFFSPGCGGCKALHPKICQLAEMNP 149 (203)
Q Consensus 123 vV~F~a~WC~~Ck~~~p~l~~la~~~~ 149 (203)
|.+|+-+.||.|-...+.+.++.++++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 567889999999999999999999884
No 259
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=59.47 E-value=36 Score=21.62 Aligned_cols=52 Identities=12% Similarity=0.133 Sum_probs=31.5
Q ss_pred EEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCC----cHHHHHHcCCCcccEEEE
Q 028819 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE----HKSMCYSLNVHVLPFFRF 178 (203)
Q Consensus 124 V~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~----~~~l~~~~~V~~~Pt~~~ 178 (203)
..|+.+.|+.|++..-.+....-. +....+|... ...+.+...-..+|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~~---~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGIP---YEWVEVDILKGETRTPEFLALNPNGEVPVLEL 57 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCC---cEEEEecCCCcccCCHHHHHhCCCCCCCEEEE
Confidence 347788999999887666654333 3444555322 233444444557899863
No 260
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=54.30 E-value=11 Score=29.39 Aligned_cols=23 Identities=9% Similarity=0.203 Sum_probs=18.6
Q ss_pred cHHHHHHcCCCcccEEEEEECCC
Q 028819 161 HKSMCYSLNVHVLPFFRFYRGAH 183 (203)
Q Consensus 161 ~~~l~~~~~V~~~Pt~~~~~~g~ 183 (203)
+...+.++||.++|||++..+++
T Consensus 158 ~~~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 158 DQKLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHHHcCCCccCEEEEEeCCe
Confidence 45567889999999999996654
No 261
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=51.35 E-value=22 Score=24.92 Aligned_cols=6 Identities=17% Similarity=0.052 Sum_probs=2.2
Q ss_pred HHHHHH
Q 028819 109 DLVESL 114 (203)
Q Consensus 109 ~~~~~l 114 (203)
+..+.+
T Consensus 66 ~~~~~~ 71 (114)
T cd02967 66 EHQRFL 71 (114)
T ss_pred HHHHHH
Confidence 333333
No 262
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=50.31 E-value=10 Score=28.99 Aligned_cols=21 Identities=10% Similarity=0.252 Sum_probs=17.4
Q ss_pred cHHHHHHcCCCcccEEEEEECCC
Q 028819 161 HKSMCYSLNVHVLPFFRFYRGAH 183 (203)
Q Consensus 161 ~~~l~~~~~V~~~Pt~~~~~~g~ 183 (203)
+..++.+++|.++||+++ ||+
T Consensus 132 ~~~~~~~~gi~gTPt~iI--nG~ 152 (178)
T cd03019 132 AEKLAKKYKITGVPAFVV--NGK 152 (178)
T ss_pred HHHHHHHcCCCCCCeEEE--CCE
Confidence 456778899999999997 676
No 263
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=48.46 E-value=81 Score=25.62 Aligned_cols=59 Identities=19% Similarity=0.325 Sum_probs=36.0
Q ss_pred EEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECC--C----------------cHHHHHHcCCCcccEEEEEECCC
Q 028819 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE--E----------------HKSMCYSLNVHVLPFFRFYRGAH 183 (203)
Q Consensus 124 V~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d--~----------------~~~l~~~~~V~~~Pt~~~~~~g~ 183 (203)
=.|.+..|..|=-....|.+++.+ ++|.-+...+| + ....++.++...+-|--++-||.
T Consensus 3 ELFTSQGCsSCPpAD~~L~~l~~~-~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vVnG~ 79 (202)
T PF06764_consen 3 ELFTSQGCSSCPPADRLLSELAAR-PDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVVNGR 79 (202)
T ss_dssp EEEE-TT-TT-HHHHHHHHHHHHH-TSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEETTT
T ss_pred eEecCCCCCCCcHHHHHHHHhhcC-CCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEECCe
Confidence 357788999999999999999998 47655555443 1 23456667777765555556886
No 264
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=48.16 E-value=13 Score=29.95 Aligned_cols=21 Identities=10% Similarity=0.184 Sum_probs=17.4
Q ss_pred cHHHHHHcCCCcccEEEEEECCC
Q 028819 161 HKSMCYSLNVHVLPFFRFYRGAH 183 (203)
Q Consensus 161 ~~~l~~~~~V~~~Pt~~~~~~g~ 183 (203)
....+++++|.++|||++ ||+
T Consensus 156 ~~~~a~~~gI~gtPtfiI--nGk 176 (207)
T PRK10954 156 QEKAAADLQLRGVPAMFV--NGK 176 (207)
T ss_pred HHHHHHHcCCCCCCEEEE--CCE
Confidence 345678899999999998 777
No 265
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=46.53 E-value=67 Score=20.99 Aligned_cols=55 Identities=9% Similarity=-0.009 Sum_probs=33.6
Q ss_pred EEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCC----cHHHHHHcCCCcccEEEEEECCC
Q 028819 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE----HKSMCYSLNVHVLPFFRFYRGAH 183 (203)
Q Consensus 124 V~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~----~~~l~~~~~V~~~Pt~~~~~~g~ 183 (203)
..|+.+.|+.|++++-.+.+.... +.+..+|... .+++.+--.-..+|++. .+|.
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl~---~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~~g~ 60 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGLR---CEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI--HGDN 60 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCCC---CEEEEecCCcCccCCHHHHHhCcCCCCCEEE--ECCE
Confidence 457788899998877544444332 4566666531 33455555566789985 3553
No 266
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=44.20 E-value=85 Score=23.70 Aligned_cols=31 Identities=26% Similarity=0.494 Sum_probs=22.3
Q ss_pred EEEECCC--ChhhHHHHHHHHHHHHhCCCcEEEEEE
Q 028819 124 VDFFSPG--CGGCKALHPKICQLAEMNPDVQFLQVN 157 (203)
Q Consensus 124 V~F~a~W--C~~Ck~~~p~l~~la~~~~~v~f~~Vd 157 (203)
|+.|+.+ |..|. +.++++.++||++.+..++
T Consensus 99 i~l~te~~pC~SC~---~vi~qF~~~~pni~~~v~~ 131 (133)
T PF14424_consen 99 IDLFTELPPCESCS---NVIEQFKKDFPNIKVNVVY 131 (133)
T ss_pred EEEEecCCcChhHH---HHHHHHHHHCCCcEEEEec
Confidence 5556554 66665 5889999999998776554
No 267
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=43.20 E-value=77 Score=24.74 Aligned_cols=65 Identities=18% Similarity=0.188 Sum_probs=46.9
Q ss_pred CCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCC---cHHHHHHcCCCcccEEEEEECC
Q 028819 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE---HKSMCYSLNVHVLPFFRFYRGA 182 (203)
Q Consensus 118 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~---~~~l~~~~~V~~~Pt~~~~~~g 182 (203)
+.+.++.-|=+=.-+-|......+++.+.++.++.++.|..|- ...+|...||..+=++--|++.
T Consensus 44 gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~~~Vl~IS~DLPFAq~RfC~aeGi~nv~~lSd~r~~ 111 (158)
T COG2077 44 GKKKVISVFPSIDTPVCATQVRKFNEEAAKLGNTVVLCISMDLPFAQKRFCGAEGIENVITLSDFRDR 111 (158)
T ss_pred CceEEEEEccCCCCchhhHHHHHHHHHHhccCCcEEEEEeCCChhHHhhhhhhcCcccceEhhhhhhh
Confidence 3444455555666799999999999999999998888888773 5667777777765555444443
No 268
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=42.83 E-value=76 Score=23.04 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=36.0
Q ss_pred cCCCeEEEEEECCCChhhHHHHHHHHHHHHhCC--CcEEEEEECCC
Q 028819 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNP--DVQFLQVNYEE 160 (203)
Q Consensus 117 ~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d~ 160 (203)
-.+|++||.=-|+-|+.-. ....++++.++|. ++.++..-|++
T Consensus 19 y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnq 63 (108)
T PF00255_consen 19 YKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQ 63 (108)
T ss_dssp GTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBST
T ss_pred cCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHH
Confidence 4689999999999999998 6778999999986 47888877753
No 269
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=40.28 E-value=23 Score=28.84 Aligned_cols=22 Identities=14% Similarity=0.248 Sum_probs=19.9
Q ss_pred HHHHHHcCCCcccEEEEEECCC
Q 028819 162 KSMCYSLNVHVLPFFRFYRGAH 183 (203)
Q Consensus 162 ~~l~~~~~V~~~Pt~~~~~~g~ 183 (203)
..+++++++.++||+++-+||+
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~ 185 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGT 185 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCc
Confidence 4578899999999999999887
No 270
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=38.28 E-value=25 Score=28.16 Aligned_cols=31 Identities=13% Similarity=0.210 Sum_probs=20.2
Q ss_pred HHHHHcCCCcccEEEEEECCCeeEEEEecCCc
Q 028819 163 SMCYSLNVHVLPFFRFYRGAHGRVCSFSCTNA 194 (203)
Q Consensus 163 ~l~~~~~V~~~Pt~~~~~~g~~~v~~~~g~~~ 194 (203)
.-+.+.||.++|+|++=. ++|.-+.|-|.+.
T Consensus 170 ~~A~~~Gv~GVP~fvv~~-~~~~~e~fwG~Dr 200 (209)
T cd03021 170 DEALKYGAFGLPWIVVTN-DKGKTEMFFGSDR 200 (209)
T ss_pred HHHHHcCCCCCCEEEEEc-CCCCccceecCCc
Confidence 445678999999999843 2223446666553
No 271
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=36.82 E-value=1.1e+02 Score=19.49 Aligned_cols=52 Identities=4% Similarity=-0.051 Sum_probs=31.2
Q ss_pred EEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECC----CcHHHHHHcCCCcccEEE
Q 028819 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE----EHKSMCYSLNVHVLPFFR 177 (203)
Q Consensus 123 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d----~~~~l~~~~~V~~~Pt~~ 177 (203)
+..|+.+.|+.|++..-.+....-. +....++.. ..+.+.+......+|++.
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~ 57 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVD---YELVPVDLTKGEHKSPEHLARNPFGQIPALE 57 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCC---cEEEEeCccccccCCHHHHhhCCCCCCCEEE
Confidence 3445567799999887666654433 344445432 124455555567789875
No 272
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=36.47 E-value=49 Score=24.08 Aligned_cols=21 Identities=14% Similarity=0.376 Sum_probs=16.2
Q ss_pred EEEEECCCChhhHHHHHHHHH
Q 028819 123 VVDFFSPGCGGCKALHPKICQ 143 (203)
Q Consensus 123 vV~F~a~WC~~Ck~~~p~l~~ 143 (203)
+..|+.+.|..|+.....+++
T Consensus 2 i~iy~~p~C~~crkA~~~L~~ 22 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEA 22 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 356889999999987765554
No 273
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=36.10 E-value=1.1e+02 Score=24.99 Aligned_cols=29 Identities=3% Similarity=0.079 Sum_probs=22.0
Q ss_pred cHHHHHHcCCCcccEEEEEECCCeeEEEEec
Q 028819 161 HKSMCYSLNVHVLPFFRFYRGAHGRVCSFSC 191 (203)
Q Consensus 161 ~~~l~~~~~V~~~Pt~~~~~~g~~~v~~~~g 191 (203)
+|.+.++|+|..+|+|++...+ ......|
T Consensus 151 DP~lF~~F~I~~VPafVv~C~~--~yD~I~G 179 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVVFCSQ--GYDIIRG 179 (212)
T ss_pred CHHHHHhcCCccccEEEEEcCC--CCCEEEe
Confidence 5889999999999999997432 2344444
No 274
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=34.06 E-value=58 Score=23.59 Aligned_cols=31 Identities=13% Similarity=0.234 Sum_probs=21.9
Q ss_pred EEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECC
Q 028819 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYE 159 (203)
Q Consensus 124 V~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d 159 (203)
..|+.+.|..|++....+++- ++.|-.+|+-
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~ 32 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK-----GIEPEVVKYL 32 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEecc
Confidence 468889999999987666653 4555556654
No 275
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=33.89 E-value=59 Score=23.44 Aligned_cols=30 Identities=13% Similarity=0.289 Sum_probs=20.2
Q ss_pred EEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEEC
Q 028819 124 VDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNY 158 (203)
Q Consensus 124 V~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~ 158 (203)
..|+.+-|..|++....+++- ++.|-.+|+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di 31 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA-----GIEPEIVEY 31 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEec
Confidence 458889999999977555543 344555554
No 276
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.70 E-value=36 Score=28.21 Aligned_cols=16 Identities=19% Similarity=0.463 Sum_probs=14.2
Q ss_pred HHHHHcCCCcccEEEE
Q 028819 163 SMCYSLNVHVLPFFRF 178 (203)
Q Consensus 163 ~l~~~~~V~~~Pt~~~ 178 (203)
..+++.||+++|||++
T Consensus 175 ~~A~e~gI~gVP~fv~ 190 (225)
T COG2761 175 AAAQEMGIRGVPTFVF 190 (225)
T ss_pred HHHHHCCCccCceEEE
Confidence 4678899999999998
No 277
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=30.83 E-value=86 Score=23.10 Aligned_cols=50 Identities=14% Similarity=0.384 Sum_probs=32.5
Q ss_pred ChhhHHHHHHHHHHHHhCCCcEEEEEECCCcH-HHHHHcC--CCcccEEEEEE
Q 028819 131 CGGCKALHPKICQLAEMNPDVQFLQVNYEEHK-SMCYSLN--VHVLPFFRFYR 180 (203)
Q Consensus 131 C~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~-~l~~~~~--V~~~Pt~~~~~ 180 (203)
|++|..+...+...-.--..+.+..|+..... .+.+..| =++.|++++=.
T Consensus 24 Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~ 76 (112)
T PF11287_consen 24 CPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLAD 76 (112)
T ss_pred CCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCC
Confidence 99999988777644333334788888876532 3333333 36899988753
No 278
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=30.77 E-value=1.5e+02 Score=24.54 Aligned_cols=60 Identities=20% Similarity=0.345 Sum_probs=40.4
Q ss_pred CCCeEEEEEE-----CCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCcHHHHHHcC-CCcccEEE-EEECCC
Q 028819 118 GDKLVVVDFF-----SPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEHKSMCYSLN-VHVLPFFR-FYRGAH 183 (203)
Q Consensus 118 ~~k~vvV~F~-----a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~~~l~~~~~-V~~~Pt~~-~~~~g~ 183 (203)
+.++|++ |. .|-||..+++...+... ++.|...|+-.+.++.+..+ ...+|||- +|-+|+
T Consensus 137 ~a~~v~l-FmKG~p~~P~CGFS~~~v~iL~~~-----nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GE 203 (227)
T KOG0911|consen 137 KAKPVML-FMKGTPEEPKCGFSRQLVGILQSH-----NVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGE 203 (227)
T ss_pred ccCeEEE-EecCCCCcccccccHHHHHHHHHc-----CCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCE
Confidence 3445554 54 57788887766555443 46688888877777766554 34689876 788888
No 279
>cd00307 RuBisCO_small_like Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit and related proteins. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits. This superfamily also contains specific proteins from cyanobacteria. CcmM plays a role in a CO2 concentrating mechanism, which cyanobacteria need to to overcome t
Probab=29.86 E-value=50 Score=23.00 Aligned_cols=33 Identities=15% Similarity=0.385 Sum_probs=21.8
Q ss_pred EECCC---Chhh--HHHHHHHHH---HHHhCCC--cEEEEEEC
Q 028819 126 FFSPG---CGGC--KALHPKICQ---LAEMNPD--VQFLQVNY 158 (203)
Q Consensus 126 F~a~W---C~~C--k~~~p~l~~---la~~~~~--v~f~~Vd~ 158 (203)
||+-| |..| ......+.+ -.++|++ |+++.+|-
T Consensus 28 ywt~w~lp~f~~~~~~~~~Vl~el~~c~~~~p~~YVRlig~D~ 70 (84)
T cd00307 28 FRTSSWQSCGPIEGRSEAQVLAALEACLAEHPGEYVRLIGIDP 70 (84)
T ss_pred cHhhhcCCCCCCCCCCHHHHHHHHHHHHHHCCCCeEEEEEEeC
Confidence 45544 6777 545555544 4568888 89999884
No 280
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=29.79 E-value=1.3e+02 Score=23.84 Aligned_cols=57 Identities=12% Similarity=0.071 Sum_probs=34.9
Q ss_pred CCCeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCCc-HHHHHHcCCCcccEEE
Q 028819 118 GDKLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEEH-KSMCYSLNVHVLPFFR 177 (203)
Q Consensus 118 ~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~~-~~l~~~~~V~~~Pt~~ 177 (203)
+++..+..|+.++|+.|.+..=.+++..-. +....||.+.. +++.+..--..+|+++
T Consensus 6 ~~~~~~~Ly~~~~s~~~~rv~~~L~e~gl~---~e~~~v~~~~~~~~~~~~nP~g~VPvL~ 63 (211)
T PRK09481 6 NKRSVMTLFSGPTDIYSHQVRIVLAEKGVS---VEIEQVEKDNLPQDLIDLNPYQSVPTLV 63 (211)
T ss_pred CCCCeeEEeCCCCChhHHHHHHHHHHCCCC---CEEEeCCcccCCHHHHHhCCCCCCCEEE
Confidence 344556666678899999988666554322 45556665432 3444443456789986
No 281
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=28.48 E-value=1.4e+02 Score=25.19 Aligned_cols=63 Identities=21% Similarity=0.293 Sum_probs=44.7
Q ss_pred CeEEEEEECCCChhhHHHHHHHHHHHHhCCCcEE--EEEECC----------------CcHHHHHHcCCCcccEEEEEEC
Q 028819 120 KLVVVDFFSPGCGGCKALHPKICQLAEMNPDVQF--LQVNYE----------------EHKSMCYSLNVHVLPFFRFYRG 181 (203)
Q Consensus 120 k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f--~~Vd~d----------------~~~~l~~~~~V~~~Pt~~~~~~ 181 (203)
..||=.|.+..|..|--....+.+++++ +++.- +.||+- .+....+.|+-.+++|-..+-|
T Consensus 42 ~~VVELfTSQGCsSCPPAd~~l~k~a~~-~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavvn 120 (261)
T COG5429 42 LGVVELFTSQGCSSCPPADANLAKLADD-PGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVVN 120 (261)
T ss_pred ceEEEEeecCCcCCCChHHHHHHHhccC-CCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchheee
Confidence 3455567778899999999899998876 45433 344432 1335667789999999888888
Q ss_pred CC
Q 028819 182 AH 183 (203)
Q Consensus 182 g~ 183 (203)
|.
T Consensus 121 Gr 122 (261)
T COG5429 121 GR 122 (261)
T ss_pred ch
Confidence 86
No 282
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=27.83 E-value=1.2e+02 Score=23.07 Aligned_cols=9 Identities=33% Similarity=1.143 Sum_probs=6.3
Q ss_pred CChhhHHHH
Q 028819 130 GCGGCKALH 138 (203)
Q Consensus 130 WC~~Ck~~~ 138 (203)
=||.|+++.
T Consensus 87 PCG~CRQ~i 95 (134)
T COG0295 87 PCGACRQVL 95 (134)
T ss_pred CcHHHHHHH
Confidence 388887754
No 283
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=27.25 E-value=3.6e+02 Score=22.28 Aligned_cols=63 Identities=13% Similarity=0.140 Sum_probs=38.1
Q ss_pred HHHHHccCCCeEEEEEECCC------ChhhHHHHHHHHHHHHhCC-CcEEEEEECCCcHHHHHH----cCCCccc
Q 028819 111 VESLWHAGDKLVVVDFFSPG------CGGCKALHPKICQLAEMNP-DVQFLQVNYEEHKSMCYS----LNVHVLP 174 (203)
Q Consensus 111 ~~~l~~~~~k~vvV~F~a~W------C~~Ck~~~p~l~~la~~~~-~v~f~~Vd~d~~~~l~~~----~~V~~~P 174 (203)
.+.+. +=+++|-|.+|.+- -..=+.+...+++.+..-+ ++.+-.||-+.+++.+++ +||...+
T Consensus 17 ~~~L~-~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~~~ 90 (271)
T PF09822_consen 17 KKVLK-SLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQPVQ 90 (271)
T ss_pred HHHHH-hCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCccc
Confidence 44444 33557777777654 2333344445555555556 499999998776666555 8877744
No 284
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=26.52 E-value=1.8e+02 Score=18.53 Aligned_cols=49 Identities=4% Similarity=-0.020 Sum_probs=28.7
Q ss_pred EEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCC-cHHHHHHcCC--CcccEEE
Q 028819 125 DFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-HKSMCYSLNV--HVLPFFR 177 (203)
Q Consensus 125 ~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~-~~~l~~~~~V--~~~Pt~~ 177 (203)
.|+.+.|+.|.+..=.+....-. +....+|... .+.+ .+.+- ..+|++.
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~gl~---~~~~~~~~~~~~~~~-~~~~p~~~~vP~l~ 54 (74)
T cd03058 3 LLGAWASPFVLRVRIALALKGVP---YEYVEEDLGNKSELL-LASNPVHKKIPVLL 54 (74)
T ss_pred EEECCCCchHHHHHHHHHHcCCC---CEEEEeCcccCCHHH-HHhCCCCCCCCEEE
Confidence 45677899999987666554333 3444455432 2333 33332 5799886
No 285
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=25.70 E-value=2.2e+02 Score=19.90 Aligned_cols=18 Identities=11% Similarity=0.141 Sum_probs=13.3
Q ss_pred CcEEEEEECCCcHHHHHH
Q 028819 150 DVQFLQVNYEEHKSMCYS 167 (203)
Q Consensus 150 ~v~f~~Vd~d~~~~l~~~ 167 (203)
+|.|-.+|++.+++..+.
T Consensus 30 ~I~f~eiDI~~d~~~r~e 47 (92)
T cd03030 30 KIEFEEVDISMNEENRQW 47 (92)
T ss_pred CCceEEEecCCCHHHHHH
Confidence 599999999876654433
No 286
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=25.66 E-value=1.8e+02 Score=18.44 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=29.8
Q ss_pred EEECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCC-cHHHHHHcCCCcccEEEE
Q 028819 125 DFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE-HKSMCYSLNVHVLPFFRF 178 (203)
Q Consensus 125 ~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~-~~~l~~~~~V~~~Pt~~~ 178 (203)
.|+.+.|+.|.+..-.+....... .+....+|... .+++.+......+|.++.
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~~~~i-~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~ 56 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHETGLGD-DVELVLVNPWSDDESLLAVNPLGKIPALVL 56 (73)
T ss_pred EecCCCCcHHHHHHHHHHHhCCCC-CcEEEEcCcccCChHHHHhCCCCCCCEEEE
Confidence 467788999998775555421111 14444554322 344444445667897763
No 287
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=25.34 E-value=2.8e+02 Score=20.47 Aligned_cols=62 Identities=11% Similarity=0.179 Sum_probs=48.3
Q ss_pred CCeEEEEEECCCChhhHHHHHHHHHHHHhCC---CcEEEEEECCCcHHHH----HHcCCC-cccEEEEEE
Q 028819 119 DKLVVVDFFSPGCGGCKALHPKICQLAEMNP---DVQFLQVNYEEHKSMC----YSLNVH-VLPFFRFYR 180 (203)
Q Consensus 119 ~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~---~v~f~~Vd~d~~~~l~----~~~~V~-~~Pt~~~~~ 180 (203)
+...++.|--+--+.-.++.+.+.++|+++. ++.|+.||-|+.+-+. +.|+|. .-|.+-+..
T Consensus 20 ~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGVV~ 89 (120)
T cd03074 20 DGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGVVN 89 (120)
T ss_pred CCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCceeeEe
Confidence 4567888998999999999999999999874 4999999999877654 345655 247766653
No 288
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=25.14 E-value=5e+02 Score=23.24 Aligned_cols=92 Identities=13% Similarity=0.154 Sum_probs=58.9
Q ss_pred cchhhhhhcCCCCeEEeCCHhHHHHHHHccCCCeEEEEEECCCChhhHHHHHHHHHHHHhC---CCcEEEEEECCCcHHH
Q 028819 88 KAQRWWEKGLQPNMREVASAQDLVESLWHAGDKLVVVDFFSPGCGGCKALHPKICQLAEMN---PDVQFLQVNYEEHKSM 164 (203)
Q Consensus 88 ~~~~w~~~~~~~~~~~i~s~~~~~~~l~~~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~---~~v~f~~Vd~d~~~~l 164 (203)
...+|.+....|.+..++..+-|...-. .-+...+|.|--.--+.-..+...+.++|+.+ +++.++.||-|+.|-+
T Consensus 238 e~~~fi~~h~rptlrkl~~~~m~e~Wed-d~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPll 316 (383)
T PF01216_consen 238 ELVEFIEEHKRPTLRKLRPEDMFETWED-DIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLL 316 (383)
T ss_dssp HHHHHHHHT-S-SEEE--GGGHHHHHHS-SSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHH
T ss_pred HHHHHHHHhchhHhhhCChhhhhhhhcc-cCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchh
Confidence 3556777777888888877665554443 34567788898888999999999999999976 4599999999887655
Q ss_pred H----HHcCCC-cccEEEEEE
Q 028819 165 C----YSLNVH-VLPFFRFYR 180 (203)
Q Consensus 165 ~----~~~~V~-~~Pt~~~~~ 180 (203)
. +.|+|. .-|.+-+..
T Consensus 317 v~yWE~tF~Idl~~PqIGvVn 337 (383)
T PF01216_consen 317 VPYWEKTFGIDLSRPQIGVVN 337 (383)
T ss_dssp HHHHHHHHTT-TTS-EEEEEE
T ss_pred HHHHHhhcCccccCCceeEEe
Confidence 4 456765 348887764
No 289
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=24.53 E-value=1.5e+02 Score=23.44 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=36.2
Q ss_pred cCCCeEEEEEECCCChhhHHHHHHHHHHHHhCCC--cEEEEEECC
Q 028819 117 AGDKLVVVDFFSPGCGGCKALHPKICQLAEMNPD--VQFLQVNYE 159 (203)
Q Consensus 117 ~~~k~vvV~F~a~WC~~Ck~~~p~l~~la~~~~~--v~f~~Vd~d 159 (203)
-.++++||.=-|+-|+.-..-...+..|.++|.+ ..++..-|.
T Consensus 32 yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCN 76 (171)
T KOG1651|consen 32 YRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCN 76 (171)
T ss_pred hCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccc
Confidence 4789999999999999999777899999999864 777777664
No 290
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=22.78 E-value=74 Score=25.42 Aligned_cols=30 Identities=23% Similarity=0.504 Sum_probs=16.2
Q ss_pred CCCeEEEEEEC-CCChhhHH----HHHHHHHHHHh
Q 028819 118 GDKLVVVDFFS-PGCGGCKA----LHPKICQLAEM 147 (203)
Q Consensus 118 ~~k~vvV~F~a-~WC~~Ck~----~~p~l~~la~~ 147 (203)
.+++||++||- .--|.|-. ++-.++++.+.
T Consensus 89 ~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka 123 (211)
T KOG0855|consen 89 GNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKA 123 (211)
T ss_pred CCCcEEEEEeccCCCCCcccccccccccHHHHhhc
Confidence 56689999982 22344433 23445555443
No 291
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=22.25 E-value=1.3e+02 Score=22.17 Aligned_cols=23 Identities=13% Similarity=0.385 Sum_probs=17.9
Q ss_pred EEEEECCCChhhHHHHHHHHHHH
Q 028819 123 VVDFFSPGCGGCKALHPKICQLA 145 (203)
Q Consensus 123 vV~F~a~WC~~Ck~~~p~l~~la 145 (203)
+..|+.+-|..|+.....+++-.
T Consensus 3 itiy~~p~C~t~rka~~~L~~~g 25 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEHG 25 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHcC
Confidence 55688999999999887666543
No 292
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=22.02 E-value=2.2e+02 Score=20.15 Aligned_cols=30 Identities=13% Similarity=0.522 Sum_probs=19.0
Q ss_pred EECCCChhhHHHHHHHHHHHHhCCCcEEEEEECCC
Q 028819 126 FFSPGCGGCKALHPKICQLAEMNPDVQFLQVNYEE 160 (203)
Q Consensus 126 F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~d~ 160 (203)
|+.+-|..|+.....+++ .++.+-.+|+.+
T Consensus 1 Y~~~~C~t~rka~~~L~~-----~gi~~~~~d~~k 30 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEE-----NGIEYEFIDYKK 30 (110)
T ss_dssp EE-TT-HHHHHHHHHHHH-----TT--EEEEETTT
T ss_pred CcCCCCHHHHHHHHHHHH-----cCCCeEeehhhh
Confidence 577889999998766664 356777788755
No 293
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.12 E-value=2.4e+02 Score=23.40 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=25.0
Q ss_pred CeEEEEEECC-CChhhHHHHHHHHHHHHhCCC
Q 028819 120 KLVVVDFFSP-GCGGCKALHPKICQLAEMNPD 150 (203)
Q Consensus 120 k~vvV~F~a~-WC~~Ck~~~p~l~~la~~~~~ 150 (203)
..+-|++|++ -||.|-.-.+.|+++..++++
T Consensus 4 ~~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~ 35 (225)
T COG2761 4 MKIEIDVFSDVVCPWCYIGKRRLEKALAEYPQ 35 (225)
T ss_pred ceEEEEEEeCCcCchhhcCHHHHHHHHHhcCc
Confidence 4555666654 599999999999999999885
No 294
>PRK10853 putative reductase; Provisional
Probab=20.96 E-value=1.4e+02 Score=21.92 Aligned_cols=31 Identities=13% Similarity=0.162 Sum_probs=21.2
Q ss_pred EEEEECCCChhhHHHHHHHHHHHHhCCCcEEEEEEC
Q 028819 123 VVDFFSPGCGGCKALHPKICQLAEMNPDVQFLQVNY 158 (203)
Q Consensus 123 vV~F~a~WC~~Ck~~~p~l~~la~~~~~v~f~~Vd~ 158 (203)
+..|+.+-|..|+.....+++- ++.|-.+|+
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~d~ 32 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ-----GIDYRFHDY 32 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc-----CCCcEEeeh
Confidence 4567889999999987666643 445555554
No 295
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=20.21 E-value=2e+02 Score=23.29 Aligned_cols=41 Identities=20% Similarity=0.145 Sum_probs=27.5
Q ss_pred CCeEEEEEE-CCCChhhHHHHHHHHHHHHhCC--CcEEEEEECC
Q 028819 119 DKLVVVDFF-SPGCGGCKALHPKICQLAEMNP--DVQFLQVNYE 159 (203)
Q Consensus 119 ~k~vvV~F~-a~WC~~Ck~~~p~l~~la~~~~--~v~f~~Vd~d 159 (203)
+|.+|+.|| ++.-+-|-.....+.+...+|. |+.++.+.+|
T Consensus 33 gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~D 76 (194)
T COG0450 33 GKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTD 76 (194)
T ss_pred CcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecC
Confidence 478888888 5566777766667776666654 3666666654
Done!