BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028820
(203 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TWL|A Chain A, Inorganic Pyrophosphatase From Pyrococcus Furiosus
Pfu-264096-001
Length = 186
Score = 150 bits (379), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 71/139 (51%), Positives = 99/139 (71%)
Query: 37 AAHPWHDLEIGPGAPKIFNCVIEIGKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFI 96
++P+HDLE GP P++ +IEI KGS+ KYELDKK+GL+ +DRVLYS YP +YG I
Sbjct: 8 GSNPFHDLEPGPDVPEVVYAIIEIPKGSRNKYELDKKTGLLKLDRVLYSPFFYPVDYGII 67
Query: 97 PRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHY 156
PRT ED+DP D+++IM+EPV P + A+ IGL MID G+KD K++AV +DP ++ +
Sbjct: 68 PRTWYEDDDPFDIMVIMREPVYPLTIIEARPIGLFKMIDSGDKDYKVLAVPVEDPYFKDW 127
Query: 157 NDIKELPPHRLAEIRRFFE 175
DI ++P L EI FF+
Sbjct: 128 KDIDDVPKAFLDEIAHFFK 146
>pdb|1UDE|A Chain A, Crystal Structure Of The Inorganic Pyrophosphatase From
The Hyperthermophilic Archaeon Pyrococcus Horikoshii Ot3
pdb|1UDE|B Chain B, Crystal Structure Of The Inorganic Pyrophosphatase From
The Hyperthermophilic Archaeon Pyrococcus Horikoshii Ot3
pdb|1UDE|C Chain C, Crystal Structure Of The Inorganic Pyrophosphatase From
The Hyperthermophilic Archaeon Pyrococcus Horikoshii Ot3
Length = 195
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 70/143 (48%), Positives = 98/143 (68%)
Query: 33 RRSVAAHPWHDLEIGPGAPKIFNCVIEIGKGSKVKYELDKKSGLIMVDRVLYSSVVYPHN 92
R S +P+HDLE GP P++ +IEI KGS+ KYELDK++GL+ +DRVLY+ YP +
Sbjct: 13 RGSHMMNPFHDLEPGPNVPEVVYALIEIPKGSRNKYELDKETGLLKLDRVLYTPFHYPVD 72
Query: 93 YGFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPE 152
YG IPRT ED DP D+++IM+EP P + A+ IGL MID G+KD K++AV +DP
Sbjct: 73 YGIIPRTWYEDGDPFDIMVIMREPTYPLTIIEARPIGLFKMIDSGDKDYKVLAVPVEDPY 132
Query: 153 YRHYNDIKELPPHRLAEIRRFFE 175
++ + DI ++P L EI FF+
Sbjct: 133 FKDWKDISDVPKAFLDEIAHFFK 155
>pdb|3I98|A Chain A, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3I98|B Chain B, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3I98|C Chain C, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3I98|D Chain D, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3I98|E Chain E, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3I98|F Chain F, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3Q4W|A Chain A, The Structure Of Archaeal Inorganic Pyrophosphatase In
Complex With Substrate
pdb|3Q5V|A Chain A, The Structure Of Inorganic Pyrophosphatase From
Thermococcus Thioreducens In Complex With Magnesium And
Sulfate
pdb|3Q5V|B Chain B, The Structure Of Inorganic Pyrophosphatase From
Thermococcus Thioreducens In Complex With Magnesium And
Sulfate
pdb|3Q9M|A Chain A, The Structure Archaeal Inorganic Pyrophosphatase In
Complex With Pyrophosphate
pdb|3Q9M|B Chain B, The Structure Archaeal Inorganic Pyrophosphatase In
Complex With Pyrophosphate
pdb|3Q9M|C Chain C, The Structure Archaeal Inorganic Pyrophosphatase In
Complex With Pyrophosphate
pdb|3Q3L|A Chain A, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3Q3L|B Chain B, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3Q3L|C Chain C, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3Q3L|D Chain D, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3Q3L|E Chain E, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3Q3L|F Chain F, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3R5U|A Chain A, The Structure Of Manganese Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase
pdb|3R5U|B Chain B, The Structure Of Manganese Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase
pdb|3R5V|A Chain A, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
pdb|3R5V|B Chain B, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
pdb|3R5V|C Chain C, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
pdb|3R5V|D Chain D, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
pdb|3R5V|E Chain E, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
pdb|3R5V|F Chain F, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
Length = 178
Score = 141 bits (356), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 96/137 (70%)
Query: 39 HPWHDLEIGPGAPKIFNCVIEIGKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPR 98
+P+H+LE GP P++ +IEI KGS+ KYELDKK+GL+ +DRVLYS YP +YG IP+
Sbjct: 2 NPFHELEPGPEVPEVVYALIEIPKGSRNKYELDKKTGLLKLDRVLYSPFFYPVDYGIIPQ 61
Query: 99 TLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYND 158
T +D DP D+++IM+EPV P + A+ IG+M M D G+KD K++AV +DP + + D
Sbjct: 62 TWYDDGDPFDIMVIMREPVYPLTIIEARPIGIMKMEDSGDKDWKVLAVPVEDPYFNDWKD 121
Query: 159 IKELPPHRLAEIRRFFE 175
I ++P L EI FF+
Sbjct: 122 ISDVPKAFLDEIAHFFQ 138
>pdb|3Q46|A Chain A, Magnesium Activated Inorganic Pyrophosphatase From
Thermococcus Thioreducens Bound To Hydrolyzed Product At
0.99 Angstrom Resolution
Length = 178
Score = 139 bits (351), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 66/137 (48%), Positives = 95/137 (69%)
Query: 39 HPWHDLEIGPGAPKIFNCVIEIGKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPR 98
+P+H+LE GP P++ +IEI KGS+ KYELDK +GL+ +DRVLYS YP +YG IP+
Sbjct: 2 NPFHELEPGPEVPEVVYALIEIPKGSRNKYELDKATGLLKLDRVLYSPFFYPVDYGIIPQ 61
Query: 99 TLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYND 158
T +D DP D+++IM+EPV P + A+ IG+M M D G+KD K++AV +DP + + D
Sbjct: 62 TWYDDGDPFDIMVIMREPVYPLTIIEARPIGIMKMEDSGDKDWKVLAVPVEDPYFNDWKD 121
Query: 159 IKELPPHRLAEIRRFFE 175
I ++P L EI FF+
Sbjct: 122 ISDVPKAFLDEIAHFFQ 138
>pdb|3R6E|A Chain A, The Structure Of Thermococcus Thioreducens' Inorganic
Pyrophosphatase Bound To Sulfate
pdb|3R6E|B Chain B, The Structure Of Thermococcus Thioreducens' Inorganic
Pyrophosphatase Bound To Sulfate
pdb|3R6E|C Chain C, The Structure Of Thermococcus Thioreducens' Inorganic
Pyrophosphatase Bound To Sulfate
pdb|3R6E|D Chain D, The Structure Of Thermococcus Thioreducens' Inorganic
Pyrophosphatase Bound To Sulfate
pdb|3R6E|E Chain E, The Structure Of Thermococcus Thioreducens' Inorganic
Pyrophosphatase Bound To Sulfate
pdb|3R6E|F Chain F, The Structure Of Thermococcus Thioreducens' Inorganic
Pyrophosphatase Bound To Sulfate
Length = 178
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 92/137 (67%)
Query: 39 HPWHDLEIGPGAPKIFNCVIEIGKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPR 98
+P+H+LE GP P++ +IEI KGS+ KYELDKK+GL+ +DRVLYS YP +YG IP+
Sbjct: 2 NPFHELEPGPEVPEVVYALIEIPKGSRNKYELDKKTGLLKLDRVLYSPFFYPVDYGIIPQ 61
Query: 99 TLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYND 158
T +D DP D+ +I +EPV P + A+ IG+ D G+KD K++AV +DP + + D
Sbjct: 62 TWYDDGDPFDIXVIXREPVYPLTIIEARPIGIXKXEDSGDKDWKVLAVPVEDPYFNDWKD 121
Query: 159 IKELPPHRLAEIRRFFE 175
I ++P L EI FF+
Sbjct: 122 ISDVPKAFLDEIAHFFQ 138
>pdb|1QEZ|A Chain A, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase.
pdb|1QEZ|B Chain B, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase.
pdb|1QEZ|C Chain C, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase.
pdb|1QEZ|D Chain D, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase.
pdb|1QEZ|E Chain E, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase.
pdb|1QEZ|F Chain F, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase
Length = 173
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 84/131 (64%), Gaps = 2/131 (1%)
Query: 47 GPGAPKIFNCVIEIGKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDP 106
G AP + N ++EI +GS +KYE D + G+I VDRVLY+S+ YP NYGFIP TL ED DP
Sbjct: 6 GKNAPDVVNVLVEIPQGSNIKYEYDDEEGVIKVDRVLYTSMNYPFNYGFIPGTLEEDGDP 65
Query: 107 LDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD--DPEYRHYNDIKELPP 164
LDVL+I + PG + + IG++ M D+ +D KI+AV D DP + + DI +LP
Sbjct: 66 LDVLVITNYQLYPGSVIEVRPIGILYMKDEEGEDAKIVAVPKDKTDPSFSNIKDINDLPQ 125
Query: 165 HRLAEIRRFFE 175
+I FFE
Sbjct: 126 ATKNKIVHFFE 136
>pdb|3SW5|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Bartonella Henselae
pdb|3SW5|B Chain B, Crystal Structure Of Inorganic Pyrophosphatase From
Bartonella Henselae
pdb|3SW5|C Chain C, Crystal Structure Of Inorganic Pyrophosphatase From
Bartonella Henselae
pdb|3SW5|D Chain D, Crystal Structure Of Inorganic Pyrophosphatase From
Bartonella Henselae
pdb|3SW5|E Chain E, Crystal Structure Of Inorganic Pyrophosphatase From
Bartonella Henselae
pdb|3SW5|F Chain F, Crystal Structure Of Inorganic Pyrophosphatase From
Bartonella Henselae
Length = 180
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/136 (46%), Positives = 86/136 (63%), Gaps = 3/136 (2%)
Query: 43 DLEIGPGAPKIFNCVIEIGKGSK-VKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLC 101
++ +G P+ N ++E+ G + +KYE+DKKSG + VDR LY+S+VYP NYGF+P TL
Sbjct: 9 EIAVGKNPPEDVNVIVEVSLGGQPIKYEMDKKSGALFVDRFLYTSMVYPGNYGFVPHTLS 68
Query: 102 EDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYN--DI 159
ED DP+DVLI P+LPGC + IG + M D G KD+KIIA+ R+ N D
Sbjct: 69 EDGDPIDVLICNTRPLLPGCVINVYPIGALIMEDDGGKDEKIIAIPTPKLTQRYNNIHDY 128
Query: 160 KELPPHRLAEIRRFFE 175
+LP L +I FFE
Sbjct: 129 TDLPEITLKQIEHFFE 144
>pdb|2UXS|A Chain A, 2.7a Crystal Structure Of Inorganic Pyrophosphatase
(rv3628) From Mycobacterium Tuberculosis At Ph 7.5
pdb|2UXS|B Chain B, 2.7a Crystal Structure Of Inorganic Pyrophosphatase
(rv3628) From Mycobacterium Tuberculosis At Ph 7.5
pdb|2UXS|C Chain C, 2.7a Crystal Structure Of Inorganic Pyrophosphatase
(rv3628) From Mycobacterium Tuberculosis At Ph 7.5
Length = 169
Score = 117 bits (293), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 79/121 (65%)
Query: 54 FNCVIEIGKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIM 113
F+ IEI KG + KYE+D ++G + +DR LY+ + YP +YGFI TL +D DPLD L+++
Sbjct: 10 FDVTIEIPKGQRNKYEVDHETGRVRLDRYLYTPMAYPTDYGFIEDTLGDDGDPLDALVLL 69
Query: 114 QEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRF 173
+PV PG + A+ +G+ M+D+ DDK++ V A DP + H DI ++P L I+ F
Sbjct: 70 PQPVFPGVLVAARPVGMFRMVDEHGGDDKVLCVPAGDPRWDHVQDIGDVPAFELDAIKHF 129
Query: 174 F 174
F
Sbjct: 130 F 130
>pdb|1SXV|A Chain A, 1.3a Crystal Structure Of Rv3628, Mycobacterium
Tuberculosis Inorganic Pyrophosphatase (Ppase) At Ph5.0
Length = 172
Score = 117 bits (293), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 79/121 (65%)
Query: 54 FNCVIEIGKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIM 113
F+ IEI KG + KYE+D ++G + +DR LY+ + YP +YGFI TL +D DPLD L+++
Sbjct: 13 FDVTIEIPKGQRNKYEVDHETGRVRLDRYLYTPMAYPTDYGFIEDTLGDDGDPLDALVLL 72
Query: 114 QEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRF 173
+PV PG + A+ +G+ M+D+ DDK++ V A DP + H DI ++P L I+ F
Sbjct: 73 PQPVFPGVLVAARPVGMFRMVDEHGGDDKVLCVPAGDPRWDHVQDIGDVPAFELDAIKHF 132
Query: 174 F 174
F
Sbjct: 133 F 133
>pdb|1WCF|A Chain A, 1.54 A Crystal Structure Of Rv3628, Mycobacterium
Tuberculosis Inorganic Pyrophosphatase (Ppase) At Ph7.0
Length = 171
Score = 117 bits (293), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 79/121 (65%)
Query: 54 FNCVIEIGKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIM 113
F+ IEI KG + KYE+D ++G + +DR LY+ + YP +YGFI TL +D DPLD L+++
Sbjct: 12 FDVTIEIPKGQRNKYEVDHETGRVRLDRYLYTPMAYPTDYGFIEDTLGDDGDPLDALVLL 71
Query: 114 QEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRF 173
+PV PG + A+ +G+ M+D+ DDK++ V A DP + H DI ++P L I+ F
Sbjct: 72 PQPVFPGVLVAARPVGMFRMVDEHGGDDKVLCVPAGDPRWDHVQDIGDVPAFELDAIKHF 131
Query: 174 F 174
F
Sbjct: 132 F 132
>pdb|4ECP|A Chain A, X-Ray Crystal Structure Of Inorganic Pyrophosphate Ppa
From Mycobacterium Leprae
pdb|4ECP|B Chain B, X-Ray Crystal Structure Of Inorganic Pyrophosphate Ppa
From Mycobacterium Leprae
Length = 167
Score = 116 bits (291), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 82/128 (64%)
Query: 47 GPGAPKIFNCVIEIGKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDP 106
GPG+ F+ IEI KG + KYE+D K+G + +DR LY+ + YP +YGFI TL ED DP
Sbjct: 1 GPGSMVQFDVTIEIPKGQRNKYEVDHKTGRVRLDRYLYTPMAYPTDYGFIEDTLGEDGDP 60
Query: 107 LDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHR 166
LD L+++ EP+ PG + A+ +G+ M+D+ DDK++ V +D + H + I ++P
Sbjct: 61 LDALVLLPEPLFPGVLVEARPVGMFRMVDEHGGDDKVLCVPVNDHRWDHIHGIIDVPTFE 120
Query: 167 LAEIRRFF 174
L I+ FF
Sbjct: 121 LDAIKHFF 128
>pdb|2BQX|A Chain A, Inorganic Pyrophosphatase From The Pathogenic Bacterium
Helicobacter Pylori-Kinetic And Structural Properties
pdb|2BQY|A Chain A, Inorganic Pyrophosphatase From The Pathogenic Bacterium
Helicobacter Pylori-Kinetic And Structural Properties
Length = 173
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 79/122 (64%), Gaps = 2/122 (1%)
Query: 56 CVIEIGKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQE 115
VIEI K S +KYELDK+SG +MVDRVLY + YP NYGF+P TL D DP+D L++
Sbjct: 17 VVIEISKHSNIKYELDKESGALMVDRVLYGAQNYPANYGFVPNTLGSDGDPVDALVLSDV 76
Query: 116 PVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD--DPEYRHYNDIKELPPHRLAEIRRF 173
G ++A+ +G++ M D+ D+K+IA+ D DP + + DI +L H L +I+ F
Sbjct: 77 AFQAGSVVKARLVGVLNMEDESGMDEKLIALPIDKIDPTHSYVKDIDDLSKHTLDKIKHF 136
Query: 174 FE 175
FE
Sbjct: 137 FE 138
>pdb|3FQ3|A Chain A, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|B Chain B, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|C Chain C, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|D Chain D, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|E Chain E, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|F Chain F, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|G Chain G, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|H Chain H, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|I Chain I, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|J Chain J, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|K Chain K, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|L Chain L, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
Length = 197
Score = 114 bits (285), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 85/135 (62%), Gaps = 3/135 (2%)
Query: 44 LEIGPGAPKIFNCVIEIGKGSK-VKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCE 102
+ IG P+ N +IE+ G + +KYE+DKK+G ++VDR LY+ + YP NYGF+P TL E
Sbjct: 27 ISIGSNPPEDVNVIIEVPVGGQPIKYEMDKKAGALIVDRFLYTPMTYPGNYGFVPHTLSE 86
Query: 103 DNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD--DPEYRHYNDIK 160
D DP+DVL+ P++PGC + + IG++ M D KD+KIIAV + Y +D
Sbjct: 87 DGDPIDVLVCNTRPLIPGCVINVRPIGVLVMEDNSGKDEKIIAVPSPHLTRRYEKIHDYT 146
Query: 161 ELPPHRLAEIRRFFE 175
++P L +I FFE
Sbjct: 147 DMPEITLKQIAHFFE 161
>pdb|1YGZ|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Helicobacter Pylori
pdb|1YGZ|B Chain B, Crystal Structure Of Inorganic Pyrophosphatase From
Helicobacter Pylori
pdb|1YGZ|C Chain C, Crystal Structure Of Inorganic Pyrophosphatase From
Helicobacter Pylori
pdb|1YGZ|D Chain D, Crystal Structure Of Inorganic Pyrophosphatase From
Helicobacter Pylori
pdb|1YGZ|E Chain E, Crystal Structure Of Inorganic Pyrophosphatase From
Helicobacter Pylori
pdb|1YGZ|F Chain F, Crystal Structure Of Inorganic Pyrophosphatase From
Helicobacter Pylori
Length = 173
Score = 110 bits (275), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 77/122 (63%), Gaps = 2/122 (1%)
Query: 56 CVIEIGKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQE 115
VIEI K S +KYELDK+SG + VDRVLY + YP NYGF+P TL D DP+D L++
Sbjct: 17 VVIEISKHSNIKYELDKESGALXVDRVLYGAQNYPANYGFVPNTLGSDGDPVDALVLSDV 76
Query: 116 PVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD--DPEYRHYNDIKELPPHRLAEIRRF 173
G ++A+ +G++ D+ D+K+IA+ D DP + + DI +L H L +I+ F
Sbjct: 77 AFQAGSVVKARLVGVLNXEDESGXDEKLIALPIDKIDPTHSYVKDIDDLSKHTLDKIKHF 136
Query: 174 FE 175
FE
Sbjct: 137 FE 138
>pdb|2PRD|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Thermus Thermophilus
Length = 174
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/132 (43%), Positives = 80/132 (60%)
Query: 44 LEIGPGAPKIFNCVIEIGKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCED 103
L +G AP++ + VIE+ +GS KYE D G I +DRVL + YP +YGFIP TL ED
Sbjct: 6 LPVGDKAPEVVHMVIEVPRGSGNKYEYDPDLGAIKLDRVLPGAQFYPGDYGFIPSTLAED 65
Query: 104 NDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELP 163
DPLD L++ P+LPG + + +GL+ M D+ D K+I V A+D H DI ++P
Sbjct: 66 GDPLDGLVLSTYPLLPGVVVEVRVVGLLLMEDEKGGDAKVIGVVAEDQRLDHIQDIGDVP 125
Query: 164 PHRLAEIRRFFE 175
EI+ FFE
Sbjct: 126 EGVKQEIQHFFE 137
>pdb|3D63|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Burkholderia Pseudomallei
pdb|3D63|B Chain B, Crystal Structure Of Inorganic Pyrophosphatase From
Burkholderia Pseudomallei
pdb|3D63|C Chain C, Crystal Structure Of Inorganic Pyrophosphatase From
Burkholderia Pseudomallei
pdb|3EIY|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Burkholderia Pseudomallei With Bound Pyrophosphate
pdb|3EIZ|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Burkholderia Pseudomallei, H32 Crystal Form
pdb|3EJ0|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Burkholderia Pseudomallei With Bound
N-(Pyridin-3-Ylmethyl) Aniline, H32 Crystal Form
pdb|3EJ2|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Burkholderia Pseudomallei With Bound 5-Amino-1-(4-
Chlorophenyl)-1h-Pyrazole-4-Carbonitrile, H32 Crystal
Form
pdb|3GVF|A Chain A, 1.7 Angstrom Crystal Structure Of Inorganic
Pyrophosphatase From Burkholderia Pseudomallei Bound
With Phosphate
Length = 196
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 83/132 (62%), Gaps = 3/132 (2%)
Query: 47 GPGAPKIFNCVIEIGKGSK-VKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDND 105
G P+ FN +IEI S+ VKYE DK GL++VDR + + + YP NYGFIP+TL D D
Sbjct: 30 GKDLPQDFNVIIEIPAQSEPVKYEADKALGLLVVDRFIGTGMRYPVNYGFIPQTLSGDGD 89
Query: 106 PLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADD--PEYRHYNDIKELP 163
P+DVL+I P+L G +RA+A+G++ M D+ D K++AV D P + I ++P
Sbjct: 90 PVDVLVITPFPLLAGSVVRARALGMLKMTDESGVDAKLVAVPHDKVCPMTANLKSIDDVP 149
Query: 164 PHRLAEIRRFFE 175
+ +I+ FFE
Sbjct: 150 AYLKDQIKHFFE 161
>pdb|3LD3|A Chain A, Crystal Structure Of Inorganic Phosphatase From Anaplasma
Phagocytophilum At 1.75a Resolution
pdb|3LD3|B Chain B, Crystal Structure Of Inorganic Phosphatase From Anaplasma
Phagocytophilum At 1.75a Resolution
Length = 199
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 83/135 (61%), Gaps = 3/135 (2%)
Query: 43 DLEIGPGAPKIFNCVIEIGKGSK-VKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLC 101
D+ G AP+ N VIE+ + S VKYE D+K+G + VDR L +++ YP NYGFIP T+
Sbjct: 26 DIGSGSNAPEEVNVVIEVSQDSHPVKYEFDEKNGALWVDRFLPTAMYYPCNYGFIPNTIA 85
Query: 102 EDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD--DPEYRHYNDI 159
D DP+DVL++ + PV+PG + + +G++ M D+ +D K++AV A D Y + +
Sbjct: 86 GDGDPVDVLVLARFPVMPGAVICVRPVGVLMMNDEKGEDAKVLAVPATKVDQYYGNIVNY 145
Query: 160 KELPPHRLAEIRRFF 174
+LP L I FF
Sbjct: 146 SDLPSSFLDSISHFF 160
>pdb|3LO0|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Ehrlichia Chaffeensis
Length = 193
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 75/131 (57%), Gaps = 3/131 (2%)
Query: 47 GPGAPKIFNCVIEIGKGS-KVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDND 105
G PK N +IEI + S VKYE DK+ L VDR L +S+ YP NYGFIP T D D
Sbjct: 30 GDNVPKEINVIIEISQNSCPVKYEFDKEKNLFCVDRFLPTSMYYPCNYGFIPHTCAGDGD 89
Query: 106 PLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD--DPEYRHYNDIKELP 163
P+DVL+ + PV+ G +RA+ +G++ M D+ +D KI+AV D Y + D + P
Sbjct: 90 PVDVLVASRFPVMSGAVIRARPVGVLVMHDESGEDVKILAVPTHKVDQYYNNIKDYSDFP 149
Query: 164 PHRLAEIRRFF 174
L I FF
Sbjct: 150 VSFLNSISHFF 160
>pdb|3D53|A Chain A, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3D53|B Chain B, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3D53|C Chain C, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3D53|D Chain D, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3D53|E Chain E, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3D53|F Chain F, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3EMJ|A Chain A, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|B Chain B, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|C Chain C, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|D Chain D, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|E Chain E, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|F Chain F, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|G Chain G, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|H Chain H, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|I Chain I, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|J Chain J, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|K Chain K, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|L Chain L, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
Length = 173
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 76/124 (61%), Gaps = 3/124 (2%)
Query: 55 NCVIEIGKGSK-VKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIM 113
N +IEI S +KYE DK+SG + VDR + +++ YP NYGFIP TL D DP+DVL++
Sbjct: 17 NVIIEIPMNSGPIKYEFDKESGALFVDRFMQTTMSYPCNYGFIPDTLSNDGDPVDVLVVA 76
Query: 114 QEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD--DPEYRHYNDIKELPPHRLAEIR 171
PV+PG ++ +AIG++ M D+ D+KIIAV D + H ++ +L I
Sbjct: 77 HHPVVPGSVIKCRAIGVLMMEDESGLDEKIIAVPTSKLDITFDHIKELDDLCEMLKKRIV 136
Query: 172 RFFE 175
FFE
Sbjct: 137 HFFE 140
>pdb|2EIP|A Chain A, Inorganic Pyrophosphatase
pdb|2EIP|B Chain B, Inorganic Pyrophosphatase
pdb|1IPW|A Chain A, Inorganic Pyrophosphatase From Escherichia Coli With Three
Magnesium Ions
pdb|1IPW|B Chain B, Inorganic Pyrophosphatase From Escherichia Coli With Three
Magnesium Ions
pdb|1JFD|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1JFD|B Chain B, Structure Of Inorganic Pyrophosphatase
pdb|1FAJ|A Chain A, Inorganic Pyrophosphatase
pdb|1INO|A Chain A, Recombinant Inorganic Pyrophosphatase From Escherichia
Coli
Length = 175
Score = 96.7 bits (239), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 77/132 (58%), Gaps = 3/132 (2%)
Query: 47 GPGAPKIFNCVIEI-GKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDND 105
G P+ VIEI +KYE+DK+SG + VDR + +++ YP NYG+I TL D D
Sbjct: 8 GKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDRFMSTAMFYPCNYGYINHTLSLDGD 67
Query: 106 PLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAV--CADDPEYRHYNDIKELP 163
P+DVL+ P+ PG +R + +G++ M D+ +D K++AV EY H D+ +LP
Sbjct: 68 PVDVLVPTPYPLQPGSVIRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLP 127
Query: 164 PHRLAEIRRFFE 175
A+I FFE
Sbjct: 128 ELLKAQIAHFFE 139
>pdb|1OBW|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1OBW|B Chain B, Structure Of Inorganic Pyrophosphatase
pdb|1OBW|C Chain C, Structure Of Inorganic Pyrophosphatase
pdb|1I6T|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1I40|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|2AU6|A Chain A, Crystal Structure Of Catalytic Intermediate Of Inorganic
Pyrophosphatase
pdb|2AU8|A Chain A, Catalytic Intermediate Structure Of Inorganic
Pyrophosphatase
pdb|2AU9|A Chain A, Inorganic Pyrophosphatase Complexed With Substrate
pdb|2AUU|A Chain A, Inorganic Pyrophosphatase Complexed With Magnesium
Pyrophosphate And Fluoride
pdb|1IGP|A Chain A, X-Ray Crystallographic Studies Of Recombinant Inorganic
Pyrophosphatase From Escherichia Coli
Length = 175
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 76/132 (57%), Gaps = 3/132 (2%)
Query: 47 GPGAPKIFNCVIEI-GKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDND 105
G P+ VIEI +KYE+DK+SG + VDR + +++ YP NYG+I TL D D
Sbjct: 8 GKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDRFMSTAMFYPCNYGYINHTLSLDGD 67
Query: 106 PLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAV--CADDPEYRHYNDIKELP 163
P+DVL+ P+ PG R + +G++ M D+ +D K++AV EY H D+ +LP
Sbjct: 68 PVDVLVPTPYPLQPGSVTRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLP 127
Query: 164 PHRLAEIRRFFE 175
A+I FFE
Sbjct: 128 ELLKAQIAHFFE 139
>pdb|3TR4|A Chain A, Structure Of An Inorganic Pyrophosphatase (Ppa) From
Coxiella Burnetii
pdb|3TR4|B Chain B, Structure Of An Inorganic Pyrophosphatase (Ppa) From
Coxiella Burnetii
pdb|3TR4|C Chain C, Structure Of An Inorganic Pyrophosphatase (Ppa) From
Coxiella Burnetii
pdb|3TR4|D Chain D, Structure Of An Inorganic Pyrophosphatase (Ppa) From
Coxiella Burnetii
pdb|3TR4|E Chain E, Structure Of An Inorganic Pyrophosphatase (Ppa) From
Coxiella Burnetii
pdb|3TR4|F Chain F, Structure Of An Inorganic Pyrophosphatase (Ppa) From
Coxiella Burnetii
Length = 178
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 3/125 (2%)
Query: 54 FNCVIEI-GKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLII 112
FN +IEI G +VKYE DK+ G + VDR +S YP NYGF+P TL +D DPLDVL++
Sbjct: 17 FNVIIEIPANGGEVKYEYDKELGFLTVDRFXPTSXRYPCNYGFVPSTLAQDGDPLDVLVL 76
Query: 113 MQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDP--EYRHYNDIKELPPHRLAEI 170
PV PG R +A+G+ D+ +D K++AV Y +K++ L I
Sbjct: 77 TPVPVQPGVLXRVRALGIXKXEDEAGEDSKVLAVPVVKACRAYEAIQSLKDISSLLLDAI 136
Query: 171 RRFFE 175
FFE
Sbjct: 137 SHFFE 141
>pdb|1MJZ|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D97n
Length = 175
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 77/132 (58%), Gaps = 3/132 (2%)
Query: 47 GPGAPKIFNCVIEI-GKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDND 105
G P+ VIEI +KYE+DK+SG + VDR + +++ YP NYG+I TL D D
Sbjct: 8 GKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDRFMSTAMFYPCNYGYINHTLSLDGD 67
Query: 106 PLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAV--CADDPEYRHYNDIKELP 163
P+DVL+ P+ PG +R + +G++ M ++ +D K++AV EY H D+ +LP
Sbjct: 68 PVDVLVPTPYPLQPGSVIRCRPVGVLKMTNEAGEDAKLVAVPHSKLSKEYDHIKDVNDLP 127
Query: 164 PHRLAEIRRFFE 175
A+I FFE
Sbjct: 128 ELLKAQIAHFFE 139
>pdb|1MJW|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D42n
pdb|1MJW|B Chain B, Structure Of Inorganic Pyrophosphatase Mutant D42n
Length = 175
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 77/132 (58%), Gaps = 3/132 (2%)
Query: 47 GPGAPKIFNCVIEI-GKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDND 105
G P+ VIEI +KYE+DK+SG + V+R + +++ YP NYG+I TL D D
Sbjct: 8 GKDLPEDIYVVIEIPANADPIKYEIDKESGALFVNRFMSTAMFYPCNYGYINHTLSLDGD 67
Query: 106 PLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAV--CADDPEYRHYNDIKELP 163
P+DVL+ P+ PG +R + +G++ M D+ +D K++AV EY H D+ +LP
Sbjct: 68 PVDVLVPTPYPLQPGSVIRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLP 127
Query: 164 PHRLAEIRRFFE 175
A+I FFE
Sbjct: 128 ELLKAQIAHFFE 139
>pdb|1MJX|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D65n
pdb|1MJX|B Chain B, Structure Of Inorganic Pyrophosphatase Mutant D65n
Length = 175
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 77/132 (58%), Gaps = 3/132 (2%)
Query: 47 GPGAPKIFNCVIEI-GKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDND 105
G P+ VIEI +KYE+DK+SG + VDR + +++ YP NYG+I TL + D
Sbjct: 8 GKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDRFMSTAMFYPCNYGYINHTLSLNGD 67
Query: 106 PLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAV--CADDPEYRHYNDIKELP 163
P+DVL+ P+ PG +R + +G++ M D+ +D K++AV EY H D+ +LP
Sbjct: 68 PVDVLVPTPYPLQPGSVIRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLP 127
Query: 164 PHRLAEIRRFFE 175
A+I FFE
Sbjct: 128 ELLKAQIAHFFE 139
>pdb|1MJY|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D70n
pdb|1MJY|B Chain B, Structure Of Inorganic Pyrophosphatase Mutant D70n
Length = 175
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 76/132 (57%), Gaps = 3/132 (2%)
Query: 47 GPGAPKIFNCVIEI-GKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDND 105
G P+ VIEI +KYE+DK+SG + VDR + +++ YP NYG+I TL D D
Sbjct: 8 GKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDRFMSTAMFYPCNYGYINHTLSLDGD 67
Query: 106 PLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAV--CADDPEYRHYNDIKELP 163
P++VL+ P+ PG R + +G++ M D+ +D K++AV EY H D+ +LP
Sbjct: 68 PVNVLVPTPYPLQPGSVTRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLP 127
Query: 164 PHRLAEIRRFFE 175
A+I FFE
Sbjct: 128 ELLKAQIAHFFE 139
>pdb|2AU7|A Chain A, The R43q Active Site Variant Of E.Coli Inorganic
Pyrophosphatase
Length = 175
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 76/132 (57%), Gaps = 3/132 (2%)
Query: 47 GPGAPKIFNCVIEI-GKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDND 105
G P+ VIEI +KYE+DK+SG + VD+ + +++ YP NYG+I TL D D
Sbjct: 8 GKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDQFMSTAMFYPCNYGYINHTLSLDGD 67
Query: 106 PLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAV--CADDPEYRHYNDIKELP 163
P+DVL+ P+ PG R + +G++ M D+ +D K++AV EY H D+ +LP
Sbjct: 68 PVDVLVPTPYPLQPGSVTRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLP 127
Query: 164 PHRLAEIRRFFE 175
A+I FFE
Sbjct: 128 ELLKAQIAHFFE 139
>pdb|3I4Q|A Chain A, Structure Of A Putative Inorganic Pyrophosphatase From The
Oil- Degrading Bacterium Oleispira Antarctica
Length = 176
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 71/132 (53%), Gaps = 3/132 (2%)
Query: 47 GPGAPKIFNCVIEI-GKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDND 105
G P IEI S +KYE+DK ++VDR + YP NYG+I TL +D D
Sbjct: 10 GKDLPNDIYVAIEIPANASPIKYEIDKDXDALLVDRFXATPXFYPANYGYINNTLADDGD 69
Query: 106 PLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPE--YRHYNDIKELP 163
LDVL+I PV PG +RA+ +G++ D+ D+K++AV + Y +DI ++P
Sbjct: 70 ALDVLVITPYPVAPGSVIRARPVGVLKXSDEAGGDEKLLAVPHEKLTQLYNDIHDIDDVP 129
Query: 164 PHRLAEIRRFFE 175
+I FFE
Sbjct: 130 QLLKDQIVHFFE 141
>pdb|1M38|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1M38|B Chain B, Structure Of Inorganic Pyrophosphatase
Length = 287
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 66/133 (49%), Gaps = 23/133 (17%)
Query: 53 IFNCVIEIGKGSKVKYEL-----------DKKSGLIMVDRVLYSSVVYPHNYGFIPRTLC 101
IFN V+EI + + K E+ D K G + R + Y HNYG P+T
Sbjct: 43 IFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWE 102
Query: 102 E------------DNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD 149
+ DNDP+DVL I + G + KA+G+M ++D+GE D K+IA+ +
Sbjct: 103 DPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIN 162
Query: 150 DPEYRHYNDIKEL 162
DP NDI+++
Sbjct: 163 DPLAPKLNDIEDV 175
>pdb|1HUJ|A Chain A, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
pdb|1HUJ|B Chain B, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
Length = 281
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 66/133 (49%), Gaps = 23/133 (17%)
Query: 53 IFNCVIEIGKGSKVKYEL-----------DKKSGLIMVDRVLYSSVVYPHNYGFIPRTLC 101
IFN V+EI + + K E+ D K G + R + Y HNYG P+T
Sbjct: 42 IFNMVVEIPRWTNAKLEITREETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWE 101
Query: 102 E------------DNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD 149
+ DNDP+DVL I + G + KA+G+M ++D+GE D K+IA+ +
Sbjct: 102 DPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIN 161
Query: 150 DPEYRHYNDIKEL 162
DP NDI+++
Sbjct: 162 DPLAPKLNDIEDV 174
>pdb|1HUK|A Chain A, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
pdb|1HUK|B Chain B, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
Length = 281
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 66/133 (49%), Gaps = 23/133 (17%)
Query: 53 IFNCVIEIGKGSKVKYEL-----------DKKSGLIMVDRVLYSSVVYPHNYGFIPRTLC 101
IFN V+EI + + K E+ D K G + R + Y HNYG P+T
Sbjct: 42 IFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWE 101
Query: 102 E------------DNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD 149
+ DNDP+DVL I + G + KA+G+M ++D+GE D K+IA+ +
Sbjct: 102 DPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIN 161
Query: 150 DPEYRHYNDIKEL 162
DP NDI+++
Sbjct: 162 DPLAPKLNDIEDV 174
>pdb|1WGI|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1WGI|B Chain B, Structure Of Inorganic Pyrophosphatase
pdb|1WGJ|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1WGJ|B Chain B, Structure Of Inorganic Pyrophosphatase
pdb|1E6A|A Chain A, Fluoride-Inhibited Substrate Complex Of Saccharomyces
Cerevisiae Inorganic Pyrophosphatase
pdb|1E6A|B Chain B, Fluoride-Inhibited Substrate Complex Of Saccharomyces
Cerevisiae Inorganic Pyrophosphatase
pdb|2IHP|A Chain A, Yeast Inorganic Pyrophosphatase With Magnesium And
Phosphate
pdb|2IHP|B Chain B, Yeast Inorganic Pyrophosphatase With Magnesium And
Phosphate
pdb|1E9G|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1E9G|B Chain B, Structure Of Inorganic Pyrophosphatase
Length = 286
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 66/133 (49%), Gaps = 23/133 (17%)
Query: 53 IFNCVIEIGKGSKVKYEL-----------DKKSGLIMVDRVLYSSVVYPHNYGFIPRTLC 101
IFN V+EI + + K E+ D K G + R + Y HNYG P+T
Sbjct: 42 IFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWE 101
Query: 102 E------------DNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD 149
+ DNDP+DVL I + G + KA+G+M ++D+GE D K+IA+ +
Sbjct: 102 DPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIN 161
Query: 150 DPEYRHYNDIKEL 162
DP NDI+++
Sbjct: 162 DPLAPKLNDIEDV 174
>pdb|8PRK|A Chain A, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
pdb|8PRK|B Chain B, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
Length = 287
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 66/133 (49%), Gaps = 23/133 (17%)
Query: 53 IFNCVIEIGKGSKVKYEL-----------DKKSGLIMVDRVLYSSVVYPHNYGFIPRTLC 101
IFN V+EI + + K E+ D K G + R + Y HNYG P+T
Sbjct: 43 IFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLKFVRNCFPHHGYIHNYGAFPQTWE 102
Query: 102 E------------DNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD 149
+ DNDP+DVL I + G + KA+G+M ++D+GE D K+IA+ +
Sbjct: 103 DPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIN 162
Query: 150 DPEYRHYNDIKEL 162
DP NDI+++
Sbjct: 163 DPLAPKLNDIEDV 175
>pdb|2IK1|A Chain A, Yeast Inorganic Pyrophosphatase Variant Y93f With
Magnesium And Phosphate
pdb|2IK1|B Chain B, Yeast Inorganic Pyrophosphatase Variant Y93f With
Magnesium And Phosphate
Length = 286
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 23/133 (17%)
Query: 53 IFNCVIEIGKGSKVKYEL-----------DKKSGLIMVDRVLYSSVVYPHNYGFIPRTLC 101
IFN V+EI + + K E+ D K G + R + Y HN+G P+T
Sbjct: 42 IFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFPHHGYIHNFGAFPQTWE 101
Query: 102 E------------DNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD 149
+ DNDP+DVL I + G + KA+G+M ++D+GE D K+IA+ +
Sbjct: 102 DPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIN 161
Query: 150 DPEYRHYNDIKEL 162
DP NDI+++
Sbjct: 162 DPLAPKLNDIEDV 174
>pdb|2IK0|A Chain A, Yeast Inorganic Pyrophosphatase Variant E48d With
Magnesium And Phosphate
pdb|2IK0|B Chain B, Yeast Inorganic Pyrophosphatase Variant E48d With
Magnesium And Phosphate
Length = 286
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 23/133 (17%)
Query: 53 IFNCVIEIGKGSKVKYEL-----------DKKSGLIMVDRVLYSSVVYPHNYGFIPRTLC 101
IFN V++I + + K E+ D K G + R + Y HNYG P+T
Sbjct: 42 IFNMVVDIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWE 101
Query: 102 E------------DNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD 149
+ DNDP+DVL I + G + KA+G+M ++D+GE D K+IA+ +
Sbjct: 102 DPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIN 161
Query: 150 DPEYRHYNDIKEL 162
DP NDI+++
Sbjct: 162 DPLAPKLNDIEDV 174
>pdb|2IK7|A Chain A, Yeast Inorganic Pyrophosphatase Variant D120n With
Magnesium And Phosphate
pdb|2IK7|B Chain B, Yeast Inorganic Pyrophosphatase Variant D120n With
Magnesium And Phosphate
Length = 286
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 23/133 (17%)
Query: 53 IFNCVIEIGKGSKVKYEL-----------DKKSGLIMVDRVLYSSVVYPHNYGFIPRTLC 101
IFN V+EI + + K E+ D K G + R + Y HNYG P+T
Sbjct: 42 IFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWE 101
Query: 102 E------------DNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD 149
+ DNDP++VL I + G + KA+G+M ++D+GE D K+IA+ +
Sbjct: 102 DPNVSHPETKAVGDNDPINVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIN 161
Query: 150 DPEYRHYNDIKEL 162
DP NDI+++
Sbjct: 162 DPLAPKLNDIEDV 174
>pdb|117E|A Chain A, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
pdb|117E|B Chain B, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
pdb|2IK4|A Chain A, Yeast Inorganic Pyrophosphatase Variant D117e With
Magnesium And Phosphate
pdb|2IK4|B Chain B, Yeast Inorganic Pyrophosphatase Variant D117e With
Magnesium And Phosphate
Length = 286
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 23/133 (17%)
Query: 53 IFNCVIEIGKGSKVKYEL-----------DKKSGLIMVDRVLYSSVVYPHNYGFIPRTLC 101
IFN V+EI + + K E+ D K G + R + Y HNYG P+T
Sbjct: 42 IFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWE 101
Query: 102 E------------DNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD 149
+ DN+P+DVL I + G + KA+G+M ++D+GE D K+IA+ +
Sbjct: 102 DPNVSHPETKAVGDNEPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIN 161
Query: 150 DPEYRHYNDIKEL 162
DP NDI+++
Sbjct: 162 DPLAPKLNDIEDV 174
>pdb|2IK6|A Chain A, Yeast Inorganic Pyrophosphatase Variant D120e With
Magnesium And Phosphate
pdb|2IK6|B Chain B, Yeast Inorganic Pyrophosphatase Variant D120e With
Magnesium And Phosphate
Length = 286
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 23/133 (17%)
Query: 53 IFNCVIEIGKGSKVKYEL-----------DKKSGLIMVDRVLYSSVVYPHNYGFIPRTLC 101
IFN V+EI + + K E+ D K G + R + Y HNYG P+T
Sbjct: 42 IFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWE 101
Query: 102 E------------DNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD 149
+ DNDP++VL I + G + KA+G+M ++D+GE D K+IA+ +
Sbjct: 102 DPNVSHPETKAVGDNDPIEVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIN 161
Query: 150 DPEYRHYNDIKEL 162
DP NDI+++
Sbjct: 162 DPLAPKLNDIEDV 174
>pdb|2IK9|A Chain A, Yeast Inorganic Pyrophosphatase Variant D152e With
Magnesium And Phosphate
pdb|2IK9|B Chain B, Yeast Inorganic Pyrophosphatase Variant D152e With
Magnesium And Phosphate
Length = 286
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 23/133 (17%)
Query: 53 IFNCVIEIGKGSKVKYEL-----------DKKSGLIMVDRVLYSSVVYPHNYGFIPRTLC 101
IFN V+EI + + K E+ D K G + R + Y HNYG P+T
Sbjct: 42 IFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWE 101
Query: 102 E------------DNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD 149
+ DNDP+DVL I + G + KA+G+M ++D+GE + K+IA+ +
Sbjct: 102 DPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETEWKVIAIDIN 161
Query: 150 DPEYRHYNDIKEL 162
DP NDI+++
Sbjct: 162 DPLAPKLNDIEDV 174
>pdb|2IK2|A Chain A, Yeast Inorganic Pyrophosphatase Variant D115e With
Magnesium And Phosphate
pdb|2IK2|B Chain B, Yeast Inorganic Pyrophosphatase Variant D115e With
Magnesium And Phosphate
Length = 286
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 23/133 (17%)
Query: 53 IFNCVIEIGKGSKVKYEL-----------DKKSGLIMVDRVLYSSVVYPHNYGFIPRTLC 101
IFN V+EI + + K E+ D K G + R + Y HNYG P+T
Sbjct: 42 IFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWE 101
Query: 102 E------------DNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD 149
+ +NDP+DVL I + G + KA+G+M ++D+GE D K+IA+ +
Sbjct: 102 DPNVSHPETKAVGENDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIN 161
Query: 150 DPEYRHYNDIKEL 162
DP NDI+++
Sbjct: 162 DPLAPKLNDIEDV 174
>pdb|1YPP|A Chain A, Acid Anhydride Hydrolase
pdb|1YPP|B Chain B, Acid Anhydride Hydrolase
Length = 286
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 68/133 (51%), Gaps = 23/133 (17%)
Query: 53 IFNCVIEIGKGSKVKYELDKKSGL--IMVD---------RVLYSSVVYPHNYGFIPRTLC 101
IFN V+EI + + K E+ K+ L I+ D R + Y HNYG P+T
Sbjct: 42 IFNMVVEIPRWTNAKLEITKEETLNPIIQDTAKGKLRFVRNCFPHHGYIHNYGAFPQTWE 101
Query: 102 E------------DNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD 149
+ DNDP+DVL I + G + KA+G+M ++D+GE D K+IA+ +
Sbjct: 102 DPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIN 161
Query: 150 DPEYRHYNDIKEL 162
DP NDI+++
Sbjct: 162 DPLAPKLNDIEDV 174
>pdb|1PYP|A Chain A, X-Ray Diffraction Study Of Inorganic Pyrophosphatase From
Baker,S Yeast At The 3 Angstroms Resolution (Russian)
pdb|1PYP|B Chain B, X-Ray Diffraction Study Of Inorganic Pyrophosphatase From
Baker,S Yeast At The 3 Angstroms Resolution (Russian)
Length = 285
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 22/132 (16%)
Query: 53 IFNCVIEIGKGSKVKYELDKK----------SGLIMVDRVLYSSVVYPHNYGFIPRTLCE 102
IFN V+EI + + K E+ K+ G + R + Y HNYG P+T +
Sbjct: 42 IFNMVVEIPRWTNAKLEITKEETLNPIIQNTKGKLRFVRNCFPHHGYIHNYGAFPQTWED 101
Query: 103 ------------DNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADD 150
DN+P+DVL I + G KA+G+M ++D+GE D K+IA+ +D
Sbjct: 102 PNVSHPETKAVGDNNPIDVLQIGETIAYTGQVKEVKALGIMALLDEGETDWKVIAIDIND 161
Query: 151 PEYRHYNDIKEL 162
P NDI+++
Sbjct: 162 PLAPKLNDIEDV 173
>pdb|4A29|A Chain A, Structure Of The Engineered Retro-Aldolase Ra95.0
Length = 258
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 77 IMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDV 109
I+ +R L S + Y +YG P L D + LD+
Sbjct: 136 ILTERELESLLEYARSYGMEPLILINDENDLDI 168
>pdb|4A2S|A Chain A, Structure Of The Engineered Retro-aldolase Ra95.5
Length = 258
Score = 26.6 bits (57), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 77 IMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDV 109
I+ +R L S + Y +YG P L D + LD+
Sbjct: 136 ILTERELESLLEYARSYGMEPLILINDENDLDI 168
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.141 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,385,530
Number of Sequences: 62578
Number of extensions: 264132
Number of successful extensions: 700
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 613
Number of HSP's gapped (non-prelim): 47
length of query: 203
length of database: 14,973,337
effective HSP length: 94
effective length of query: 109
effective length of database: 9,091,005
effective search space: 990919545
effective search space used: 990919545
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)