Query 028820
Match_columns 203
No_of_seqs 133 out of 962
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 03:03:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028820.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028820hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02373 soluble inorganic pyr 100.0 8.7E-65 1.9E-69 428.2 17.4 155 30-184 1-155 (188)
2 PRK00642 inorganic pyrophospha 100.0 1.2E-62 2.6E-67 419.9 18.3 159 34-192 5-182 (205)
3 PLN02707 Soluble inorganic pyr 100.0 3.6E-61 7.8E-66 424.1 16.5 168 14-183 34-223 (267)
4 PRK01250 inorganic pyrophospha 100.0 5.9E-60 1.3E-64 395.3 17.0 142 40-181 2-146 (176)
5 cd00412 pyrophosphatase Inorga 100.0 6.4E-57 1.4E-61 370.4 14.9 131 52-182 1-131 (155)
6 PRK02230 inorganic pyrophospha 100.0 1.1E-55 2.5E-60 371.6 15.6 132 52-183 3-134 (184)
7 PF00719 Pyrophosphatase: Inor 100.0 2.3E-55 4.9E-60 361.1 11.3 127 55-181 1-127 (156)
8 KOG1626 Inorganic pyrophosphat 100.0 2.9E-55 6.3E-60 383.2 12.6 173 15-189 6-212 (279)
9 COG0221 Ppa Inorganic pyrophos 100.0 7.2E-53 1.6E-57 351.2 14.5 144 39-183 1-144 (171)
10 KOG1626 Inorganic pyrophosphat 94.5 0.049 1.1E-06 49.1 4.2 61 11-71 11-72 (279)
11 PF07177 Neuralized: Neuralize 42.2 28 0.00061 25.0 2.7 22 108-129 30-51 (69)
12 smart00588 NEUZ domain in neur 39.0 40 0.00087 26.7 3.4 44 105-152 28-71 (123)
13 cd05694 S1_Rrp5_repeat_hs2_sc2 37.4 23 0.00051 25.2 1.7 28 93-130 30-57 (74)
14 KOG1110 Putative steroid membr 34.8 27 0.00058 30.1 1.9 52 141-193 108-159 (183)
15 KOG3456 NADH:ubiquinone oxidor 33.1 18 0.00039 29.0 0.5 41 138-196 75-115 (120)
16 PF06249 EutQ: Ethanolamine ut 29.3 43 0.00094 27.9 2.2 28 58-93 123-150 (152)
17 cd01460 vWA_midasin VWA_Midasi 25.6 30 0.00066 31.0 0.8 27 151-177 237-263 (266)
18 COG1430 Uncharacterized conser 24.8 68 0.0015 26.0 2.5 30 39-70 82-111 (126)
19 PF08437 Glyco_transf_8C: Glyc 24.5 35 0.00075 23.7 0.7 13 36-48 11-23 (57)
20 cd02861 E_set_proteins_like E 23.5 94 0.002 22.1 2.9 33 39-71 23-56 (82)
21 PF05182 Fip1: Fip1 motif; In 21.7 26 0.00057 23.7 -0.3 10 91-100 24-33 (45)
22 cd05695 S1_Rrp5_repeat_hs3 S1_ 21.5 75 0.0016 21.8 2.0 32 94-131 26-57 (66)
23 PF07765 KIP1: KIP1-like prote 21.3 75 0.0016 23.7 2.0 17 164-180 53-69 (74)
No 1
>PLN02373 soluble inorganic pyrophosphatase
Probab=100.00 E-value=8.7e-65 Score=428.16 Aligned_cols=155 Identities=89% Similarity=1.457 Sum_probs=150.8
Q ss_pred hcccCCcccCcCCCCCCCCCCCCeeEEEEEeCCCCCceEEEeccCCCeEeeeecccccccccccCcCccccCCCCCcccE
Q 028820 30 SMSRRSVAAHPWHDLEIGPGAPKIFNCVIEIGKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDV 109 (203)
Q Consensus 30 ~~~~~~~~~spwHdipl~~~~~~~vn~VVEIPrgS~~KyEid~~~g~i~~Dr~l~~~~~yP~NYGfIPqT~~gDgDPLDv 109 (203)
||+++..++|||||||++++.++.+|+||||||||++|||+|+++|.|++||++++++.||||||||||||++|||||||
T Consensus 1 ~~~~~~~~~~~whdi~~~~~~~~~v~vVIEIP~gs~~KyE~dk~~g~i~~Dr~l~~~~~yP~nYGfIP~T~~~DgDPLDv 80 (188)
T PLN02373 1 SMSRRSVAAHPWHDLEIGPGAPAIFNCVVEITKGSKVKYELDKKTGLIKVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDV 80 (188)
T ss_pred CcccccccCCccccCCCCCCCCCEEEEEEEECCCCCeeEEEccCCCCEEEeeecccCCcCCcccccccccccCCCCccEE
Confidence 47788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccCCCceEEEEEEEeeEeeeeCCCCCcEEEEEeCCCccccCCCCCCCCChhhHHHHHHHHHHhhhccccC
Q 028820 110 LIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDCILSTIYN 184 (203)
Q Consensus 110 lvl~~~p~~~G~v~~vrviGvL~miD~gE~D~KIIaV~~~Dp~~~~i~di~Dv~~~~l~~I~~fFr~YK~l~~~~ 184 (203)
|||++.|+.||++++||+||+|+|+|+||.|||||||+.+||+|++++|++||+++++++|+|||++||.++++.
T Consensus 81 lvl~~~~~~~G~vi~~R~iG~l~m~D~ge~D~KiIaV~~~dp~~~~i~dl~Dl~~~~l~~I~~fF~~YK~legK~ 155 (188)
T PLN02373 81 LVLMQEPVLPGCFLRARAIGLMPMIDQGEKDDKIIAVCADDPEYRHYTDIKELPPHRLAEIRRFFEDYKKNENKE 155 (188)
T ss_pred EEecCCCCCCceEEEEEEEEEEEEeeCCCCCCeEEEEECCCcccccCCChHHCCHHHHHHHHHHHHHhcccCCCe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999554
No 2
>PRK00642 inorganic pyrophosphatase; Provisional
Probab=100.00 E-value=1.2e-62 Score=419.87 Aligned_cols=159 Identities=42% Similarity=0.639 Sum_probs=149.9
Q ss_pred CCcccCcCCCCCCCCCCCCeeEEEEEeCCCCCceEEEeccCCCeEeeeecccccccccccCcCccccC------------
Q 028820 34 RSVAAHPWHDLEIGPGAPKIFNCVIEIGKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLC------------ 101 (203)
Q Consensus 34 ~~~~~spwHdipl~~~~~~~vn~VVEIPrgS~~KyEid~~~g~i~~Dr~l~~~~~yP~NYGfIPqT~~------------ 101 (203)
.+.++|||||||++++.++.|||||||||||++|||+|+++|.+++||++++++.||+|||||||||+
T Consensus 5 ~~~~~spwhdi~~~~~~~~~vn~VIEIP~gs~~KyE~dk~~g~~~ldr~l~~~~~yP~nYGfIPqT~~dp~~~~~~~~~~ 84 (205)
T PRK00642 5 PLSRAHPWHGLSLGPDAPESVCCYIEITPFDTVKYELDKATGYLKVDRPQKFSNFCPALYGFIPRTYCGDLSGKLSGEQS 84 (205)
T ss_pred cccccCccccCCCCCCCCCEEEEEEEECCCCCeeEEEecCCCceEEeeecccCCcCCcccCcCcccccCccccccccccc
Confidence 45677999999999988999999999999999999999999999999999999999999999999995
Q ss_pred ------CCCCcccEEEeccccCCCceE-EEEEEEeeEeeeeCCCCCcEEEEEeCCCccccCCCCCCCCChhhHHHHHHHH
Q 028820 102 ------EDNDPLDVLIIMQEPVLPGCF-LRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFF 174 (203)
Q Consensus 102 ------gDgDPLDvlvl~~~p~~~G~v-~~vrviGvL~miD~gE~D~KIIaV~~~Dp~~~~i~di~Dv~~~~l~~I~~fF 174 (203)
|||||||||||++.|+.+|++ ++|||||+|+|+|+||+|||||||+++||+|++|+|++||+++++++|+|||
T Consensus 85 ~~~~~~gDgDPLDvlvl~~~~~~~G~v~i~~R~iG~l~miD~ge~D~KIiaV~~~Dp~~~~i~dl~Dl~~~~l~~I~~fF 164 (205)
T PRK00642 85 GREDIKGDGDPLDICVLTEKNITHGNILLQARPIGGLRMIDGGEADDKIIAVLEDDLVYGEIKDISECPGTLLDRLQHYF 164 (205)
T ss_pred ccccCCCCCCceEEEEecCCCcCCCceEEEEEEeEEEEEecCCCccceEEEEECCCCccccCCChHHCCHHHHHHHHHHH
Confidence 799999999999999999995 7999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccccCCceeeeeC
Q 028820 175 EDCILSTIYNGSICFICE 192 (203)
Q Consensus 175 r~YK~l~~~~~~~~~~~~ 192 (203)
++||.+++..++-..+.+
T Consensus 165 ~~YK~legk~~k~~~~~g 182 (205)
T PRK00642 165 LTYKATPGELIKGVEIVG 182 (205)
T ss_pred HHHcCcccCCCCeEEECC
Confidence 999999987766444433
No 3
>PLN02707 Soluble inorganic pyrophosphatase
Probab=100.00 E-value=3.6e-61 Score=424.09 Aligned_cols=168 Identities=33% Similarity=0.514 Sum_probs=155.0
Q ss_pred CCCCCCCCCcccchhhhcccCCcccCcCCCCCCCCCCCCeeEEEEEeCCCCCceEEEecc--CCCeEeeeeccccccccc
Q 028820 14 VSQPPAHPPLNERILSSMSRRSVAAHPWHDLEIGPGAPKIFNCVIEIGKGSKVKYELDKK--SGLIMVDRVLYSSVVYPH 91 (203)
Q Consensus 14 ~~~~g~~~~~~~r~~~~~~~~~~~~spwHdipl~~~~~~~vn~VVEIPrgS~~KyEid~~--~g~i~~Dr~l~~~~~yP~ 91 (203)
..++|..+|.+||+|+ ....|+.+|||||||++ ..+++|||||||||||++|||++++ .++|+|||.+...+.||+
T Consensus 34 ~~~~G~~~t~~~r~~~-~~~~g~~~spwHdIpl~-~~~~~vn~VVEIPrgs~~KyEidk~~~~npi~qD~~~g~lr~yP~ 111 (267)
T PLN02707 34 VEEEGEAETLDYRVFF-SDGSGKKVSPWHDIPLH-AGDGTFNFVVEIPKETSAKMEVATDEPFTPIKQDTKKGKLRDYPY 111 (267)
T ss_pred EEeecCCCCcceEEEE-ECCCCCccCchhcCCCC-CCCCEEEEEEEECCCCceeEEECccCCCCCEEEeeecCceEECCC
Confidence 3789999999999984 23368889999999999 5689999999999999999999987 568999999888778886
Q ss_pred ----ccCcCcccc-------------CCCCCcccEEEeccccCCCceEEEEEEEeeEeeeeCCCCCcEEEEEeCCCcccc
Q 028820 92 ----NYGFIPRTL-------------CEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYR 154 (203)
Q Consensus 92 ----NYGfIPqT~-------------~gDgDPLDvlvl~~~p~~~G~v~~vrviGvL~miD~gE~D~KIIaV~~~Dp~~~ 154 (203)
||||||||| +|||||||||||++.++.||++++|||||+|+|+|+||+|||||||+++||+|+
T Consensus 112 ~~~~NYGfIPqTwedp~~~~~~~~~l~gDgDPLDVlvi~~~~~~pG~Vv~vR~IGvL~miDeGE~D~KIIaV~~~Dp~~~ 191 (267)
T PLN02707 112 NINWNYGLLPQTWEDPTHANPEVEGAFGDNDPVDVVEIGERAAKIGEVLKVKPLGVLAMIDEGELDWKVVAISADDPKAS 191 (267)
T ss_pred cCccccccccccccCcccccccccccCCCCCccEEEEecCCCcCCccEEEEEEeEEEEEEeCCCCCCEEEEEECCCCccc
Confidence 999999998 489999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChhh---HHHHHHHHHHhhhcccc
Q 028820 155 HYNDIKELPPHR---LAEIRRFFEDCILSTIY 183 (203)
Q Consensus 155 ~i~di~Dv~~~~---l~~I~~fFr~YK~l~~~ 183 (203)
++||++||+++. +++|+|||++||.++++
T Consensus 192 ~i~di~Dv~~~~pg~l~~I~~fF~~YK~~eGK 223 (267)
T PLN02707 192 LVNDVDDVEKHFPGTLTAIRDWFRDYKIPDGK 223 (267)
T ss_pred ccCChhHhhhhhhhHHHHHHHHHHHhcCCCCC
Confidence 999999999765 89999999999999854
No 4
>PRK01250 inorganic pyrophosphatase; Provisional
Probab=100.00 E-value=5.9e-60 Score=395.30 Aligned_cols=142 Identities=43% Similarity=0.788 Sum_probs=139.7
Q ss_pred cCCCCCCCCCCCCeeEEEEEeCCCCC-ceEEEeccCCCeEeeeecccccccccccCcCccccCCCCCcccEEEeccccCC
Q 028820 40 PWHDLEIGPGAPKIFNCVIEIGKGSK-VKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVL 118 (203)
Q Consensus 40 pwHdipl~~~~~~~vn~VVEIPrgS~-~KyEid~~~g~i~~Dr~l~~~~~yP~NYGfIPqT~~gDgDPLDvlvl~~~p~~ 118 (203)
.||++|.+.+.++.|||||||||||+ +|||+|+++|.+++||++++++.||||||||||||++||||||||||++.|+.
T Consensus 2 ~~~~l~~~~~~~~~v~vvvEIPkgs~~~KyE~d~~~g~~~~dR~l~~~~~yP~nYGfIP~T~~~DgDPLDvlvl~~~~~~ 81 (176)
T PRK01250 2 SLNKIPAGKDLPEDINVIIEIPANSDPIKYEVDKESGALFVDRFLYTAMFYPCNYGFIPHTLSLDGDPVDVLVVTPYPLV 81 (176)
T ss_pred ChhhCCCCCCCCCEEEEEEEeCCCCCceeEEEecCCCCEEEeeccCCCCcCCcCcccCCCcccCCCCceEEEEecCCCCC
Confidence 69999999899999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEEEeeEeeeeCCCCCcEEEEEeCC--CccccCCCCCCCCChhhHHHHHHHHHHhhhcc
Q 028820 119 PGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD--DPEYRHYNDIKELPPHRLAEIRRFFEDCILST 181 (203)
Q Consensus 119 ~G~v~~vrviGvL~miD~gE~D~KIIaV~~~--Dp~~~~i~di~Dv~~~~l~~I~~fFr~YK~l~ 181 (203)
||++++||+||+|+|+|+||.|||||||+.+ ||+|++++|++||+++++++|+|||++||.++
T Consensus 82 ~G~vv~~r~iG~l~m~D~ge~D~KiiaV~~~~~dp~~~~i~dl~dl~~~~l~eI~~fF~~YK~le 146 (176)
T PRK01250 82 PGSVIRCRPVGVLKMEDESGEDAKIIAVPHDKLSPEYDHIKDVNDLPELLKAQIKHFFEHYKDLE 146 (176)
T ss_pred CceEEEEEEEEEEEeecCCCCCCeEEEEECCCCCccccccCChHHCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999998 79999999999999999999999999999997
No 5
>cd00412 pyrophosphatase Inorganic pyrophosphatase. These enzymes hydrolyze inorganic pyrophosphate (PPi) to two molecules of orthophosphates (Pi). The reaction requires bivalent cations. The enzymes in general exist as homooligomers.
Probab=100.00 E-value=6.4e-57 Score=370.42 Aligned_cols=131 Identities=56% Similarity=0.944 Sum_probs=129.0
Q ss_pred CeeEEEEEeCCCCCceEEEeccCCCeEeeeecccccccccccCcCccccCCCCCcccEEEeccccCCCceEEEEEEEeeE
Q 028820 52 KIFNCVIEIGKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLM 131 (203)
Q Consensus 52 ~~vn~VVEIPrgS~~KyEid~~~g~i~~Dr~l~~~~~yP~NYGfIPqT~~gDgDPLDvlvl~~~p~~~G~v~~vrviGvL 131 (203)
+.+|+||||||||++|||+|+++|.|++||++++++.||+|||||||||++|||||||+||++.|+.||++++||+||+|
T Consensus 1 ~~v~vvIEIP~gs~~KyE~d~~~g~i~~DR~l~~~~~yP~nYGfiP~T~~~DgDPlDvlvl~~~~~~~G~~~~~r~iG~l 80 (155)
T cd00412 1 EVVNVVIEIPKGSNAKYEIDKETGPIKVDRFLYSSMGYPWNYGFIPQTLEDDGDPLDVLVIGEEPLFPGSVIRVRPLGVL 80 (155)
T ss_pred CEEEEEEEECCCCceeEEEccCCCceeeccccccCCcCcccccccCCcccCCCCceEEEEEcCCCCCCeeEEEEEEEEEE
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCcEEEEEeCCCccccCCCCCCCCChhhHHHHHHHHHHhhhccc
Q 028820 132 PMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDCILSTI 182 (203)
Q Consensus 132 ~miD~gE~D~KIIaV~~~Dp~~~~i~di~Dv~~~~l~~I~~fFr~YK~l~~ 182 (203)
+|+|+||.|||||||+.+||+|++++|++|||++++++|+|||++||.+++
T Consensus 81 ~m~D~ge~D~KiiaV~~~dp~~~~i~~l~Dl~~~~l~~I~~fF~~YK~le~ 131 (155)
T cd00412 81 KMIDEGETDWKVIAVPVDDPRYSHINDISDVPPHLLDEIKHFFEHYKDLEG 131 (155)
T ss_pred EeccCCCccceEEEeeCCCcccccCCChHHCCHHHHHHHHHHHHHhcccCC
Confidence 999999999999999999999999999999999999999999999999997
No 6
>PRK02230 inorganic pyrophosphatase; Provisional
Probab=100.00 E-value=1.1e-55 Score=371.62 Aligned_cols=132 Identities=48% Similarity=0.741 Sum_probs=129.7
Q ss_pred CeeEEEEEeCCCCCceEEEeccCCCeEeeeecccccccccccCcCccccCCCCCcccEEEeccccCCCceEEEEEEEeeE
Q 028820 52 KIFNCVIEIGKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLM 131 (203)
Q Consensus 52 ~~vn~VVEIPrgS~~KyEid~~~g~i~~Dr~l~~~~~yP~NYGfIPqT~~gDgDPLDvlvl~~~p~~~G~v~~vrviGvL 131 (203)
+.||+||||||||++|||+|+++|.+++||++++++.||+|||||||||++|||||||+||++.|+.||++++||+||+|
T Consensus 3 ~~vnvvIEIP~gs~~KyE~d~~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DGDPLDvlvl~~~~~~pG~vi~~r~IGvl 82 (184)
T PRK02230 3 KIIEVTIEIPKGSNIKYEYDRKTNKIVVDRILRGDFVYPANYGFIKEALDWDGDELDVLVYSDQKFLPGTVLNARIIGAM 82 (184)
T ss_pred cEEEEEEEECCCCCeeEEEecCCCCEEEEeecCCCCCCCcCcccCCCccCCCCCceEEEEECCCCCCCccEEEEEEEEEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCcEEEEEeCCCccccCCCCCCCCChhhHHHHHHHHHHhhhcccc
Q 028820 132 PMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDCILSTIY 183 (203)
Q Consensus 132 ~miD~gE~D~KIIaV~~~Dp~~~~i~di~Dv~~~~l~~I~~fFr~YK~l~~~ 183 (203)
+|+|+||.|||||||+.+||+|+++++++|||++++++|+|||++||.+++.
T Consensus 83 ~m~D~ge~D~KIIaV~~~dp~~~~i~di~Dlp~~~l~~I~~fF~~YK~legk 134 (184)
T PRK02230 83 KMIDDGETDTKLIAVHDDDYRLDHINSLKDLPQHWLDEIEYFFSNYKNWKRK 134 (184)
T ss_pred EeccCCCcCcEEEEEECCCCChhhcCChHHCCHHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999999999999999999999999999999954
No 7
>PF00719 Pyrophosphatase: Inorganic pyrophosphatase; InterPro: IPR008162 Inorganic pyrophosphatase (3.6.1.1 from EC) (PPase) [, ] is the enzyme responsible for the hydrolysis of pyrophosphate (PPi) which is formed principally as the product of the many biosynthetic reactions that utilise ATP. All known PPases require the presence of divalent metal cations, with magnesium conferring the highest activity. Among other residues, a lysine has been postulated to be part of or close to the active site. PPases have been sequenced from bacteria such as Escherichia coli (homohexamer), Bacillus PS3 (Thermophilic bacterium PS-3) and Thermus thermophilus, from the archaebacteria Thermoplasma acidophilum, from fungi (homodimer), from a plant, and from bovine retina. In yeast, a mitochondrial isoform of PPase has been characterised which seems to be involved in energy production and whose activity is stimulated by uncouplers of ATP synthesis. The sequences of PPases share some regions of similarities, among which is a region that contains three conserved aspartates that are involved in the binding of cations.; GO: 0000287 magnesium ion binding, 0004427 inorganic diphosphatase activity, 0006796 phosphate-containing compound metabolic process, 0005737 cytoplasm; PDB: 2UXS_A 1WCF_A 1SXV_A 3I4Q_A 2PRD_A 2IHP_B 1PYP_A 2IK7_A 2IK4_A 1E9G_A ....
Probab=100.00 E-value=2.3e-55 Score=361.08 Aligned_cols=127 Identities=56% Similarity=0.949 Sum_probs=119.8
Q ss_pred EEEEEeCCCCCceEEEeccCCCeEeeeecccccccccccCcCccccCCCCCcccEEEeccccCCCceEEEEEEEeeEeee
Q 028820 55 NCVIEIGKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMI 134 (203)
Q Consensus 55 n~VVEIPrgS~~KyEid~~~g~i~~Dr~l~~~~~yP~NYGfIPqT~~gDgDPLDvlvl~~~p~~~G~v~~vrviGvL~mi 134 (203)
||||||||||++|||++++++.+++||++++++.||+|||||||||+||||||||+|||+.|+.||++++||+||+|+|+
T Consensus 1 n~viEIP~gs~~KyE~d~~~~~~~idr~~~~~~~yP~NYGfIP~T~~~DGDPLDvlvl~~~~~~~G~v~~~r~iG~l~m~ 80 (156)
T PF00719_consen 1 NVVIEIPKGSRAKYEYDKETGLNPIDRPLYSSMPYPFNYGFIPQTLGGDGDPLDVLVLGSEPLPPGSVVRVRVIGVLKMI 80 (156)
T ss_dssp EEEEEE-TTSSEEEEEETTTTEEEEEEE-SSSBS-SSEEEEETTEEBTTSSCEEEEEESSS---TTEEEEEEEEEEEEEE
T ss_pred CEEEEECCCCCeeEEECCCCCCccceeccccCcCCccccccccceecCCCCeeeEEEEecccccceeEEEEeceEEEEEe
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCcEEEEEeCCCccccCCCCCCCCChhhHHHHHHHHHHhhhcc
Q 028820 135 DQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDCILST 181 (203)
Q Consensus 135 D~gE~D~KIIaV~~~Dp~~~~i~di~Dv~~~~l~~I~~fFr~YK~l~ 181 (203)
|+||+|||||||+.+||+|+++++++|++++.+++|++||++||.++
T Consensus 81 D~ge~D~KiiaV~~~dp~~~~i~dl~dl~~~~~~~i~~fF~~YK~l~ 127 (156)
T PF00719_consen 81 DDGERDDKIIAVPVDDPRYDDIKDLEDLPPHLLDEIEHFFRNYKDLE 127 (156)
T ss_dssp ETTEEEEEEEEEETTCGGGTTHHSGGGSSHHHHHHHHHHHHHTTTTS
T ss_pred eCCCCceEEEEeccCCcccCCcCcHHHhChhHHHHHHHHHHHhcCcC
Confidence 99999999999999999999999999999999999999999999995
No 8
>KOG1626 consensus Inorganic pyrophosphatase/Nucleosome remodeling factor, subunit NURF38 [Energy production and conversion]
Probab=100.00 E-value=2.9e-55 Score=383.23 Aligned_cols=173 Identities=38% Similarity=0.604 Sum_probs=154.4
Q ss_pred CCCCCCCCcccchhhhccc-CCcccCcCCCCCCCCCCCCeeEEEEEeCCCCCceEEEeccC-----------CCeEeeee
Q 028820 15 SQPPAHPPLNERILSSMSR-RSVAAHPWHDLEIGPGAPKIFNCVIEIGKGSKVKYELDKKS-----------GLIMVDRV 82 (203)
Q Consensus 15 ~~~g~~~~~~~r~~~~~~~-~~~~~spwHdipl~~~~~~~vn~VVEIPrgS~~KyEid~~~-----------g~i~~Dr~ 82 (203)
.+.|+.++++||+| +.. .+..+|||||||+..+...++|||+||||++++|||+++++ |.++.+|.
T Consensus 6 ~e~g~~~s~~~rvy--~~~~~~~~iS~fhdipl~a~~~~~~nmvvEiPrwtnak~EIs~k~~~~pikqD~KkGklR~v~n 83 (279)
T KOG1626|consen 6 VETGKKYSLDYRVY--FPKLNGRIISPFHDIPLAAHPWHDLNMVVEIPRWTNAKMEISKKEPFNPIKQDKKKGKLRFVRN 83 (279)
T ss_pred eeccccCCccceee--ecCCCCccccccccCccccCccccEeecccccceeeeEEEEeccCCCCcceeeccCCceEEEEe
Confidence 57899999999999 555 55599999999999988899999999999999999999654 56777788
Q ss_pred cccccccccccCcCccccC------------CCCCcccEEEeccccCCCceEEEEEEEeeEeeeeCCCCCcEEEEEeCCC
Q 028820 83 LYSSVVYPHNYGFIPRTLC------------EDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADD 150 (203)
Q Consensus 83 l~~~~~yP~NYGfIPqT~~------------gDgDPLDvlvl~~~p~~~G~v~~vrviGvL~miD~gE~D~KIIaV~~~D 150 (203)
+|++..||||||||||||+ |||||||||+||+++..+|++++||+||+|+|||+||+|||||||+++|
T Consensus 84 ~fp~~gYiwNYGalPqTwedP~~~~~~t~~~gDnDPiDV~eIg~~~~~~G~vl~vKvLG~malIDeGE~DwKiIAIdvnD 163 (279)
T KOG1626|consen 84 LFPYKGYIWNYGALPQTWEDPNHVDPETKAKGDNDPIDVLEIGQEPVLPGCVLQVKVLGLMALIDEGETDWKIIAIDVND 163 (279)
T ss_pred cccccccccccccCcccccCCCcccccccccCCCCcceeeEecccccccccEEEEEeeeeeecccCCCccceEEEEECCC
Confidence 9999999999999999997 5889999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCC---ChhhHHHHHHHHHHhhh-------ccccCCceee
Q 028820 151 PEYRHYNDIKEL---PPHRLAEIRRFFEDCIL-------STIYNGSICF 189 (203)
Q Consensus 151 p~~~~i~di~Dv---~~~~l~~I~~fFr~YK~-------l~~~~~~~~~ 189 (203)
|.++++||++|| ++|+|+++++|||.||. .++|+|++.+
T Consensus 164 P~A~~~ndi~DV~~~~Pg~L~~tr~wFr~YKiPdGKpeN~faf~~~f~n 212 (279)
T KOG1626|consen 164 PLASEYNDIEDVEKLFPGLLEATRRWFRDYKIPDGKPENKFAFVGDFLN 212 (279)
T ss_pred cchhhhccHHHHHHhCcchHHHHHHHHHHcCCCCCCCccchhhcccccC
Confidence 977777777765 68999999999999995 4556665544
No 9
>COG0221 Ppa Inorganic pyrophosphatase [Energy production and conversion]
Probab=100.00 E-value=7.2e-53 Score=351.24 Aligned_cols=144 Identities=51% Similarity=0.872 Sum_probs=141.0
Q ss_pred CcCCCCCCCCCCCCeeEEEEEeCCCCCceEEEeccCCCeEeeeecccccccccccCcCccccCCCCCcccEEEeccccCC
Q 028820 39 HPWHDLEIGPGAPKIFNCVIEIGKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVL 118 (203)
Q Consensus 39 spwHdipl~~~~~~~vn~VVEIPrgS~~KyEid~~~g~i~~Dr~l~~~~~yP~NYGfIPqT~~gDgDPLDvlvl~~~p~~ 118 (203)
|+||+||++++. ..+||+||||+||++|||++++++.+.+||++++++.||+|||||||||++|||||||+|++++|+.
T Consensus 1 ~~~~~~~~~~~~-~~i~vviEIP~~s~~KyE~dk~~~~~~vdR~l~~~~~YP~NYGfiP~Tl~~DGDPlDvlVi~~~p~~ 79 (171)
T COG0221 1 MDLHKIPAGPDD-EDINVVIEIPKGSNIKYEVDKETGRLLVDRPLKTPMGYPVNYGFIPNTLSDDGDPLDVLVIGEEPLA 79 (171)
T ss_pred CCccccCCCCCc-ceEEEEEeccCCCccceEEeeecCceeeeecCCCCCcCCccccccCCcccCCCCceEEEEEcCcCCC
Confidence 589999999887 7999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEEEeeEeeeeCCCCCcEEEEEeCCCccccCCCCCCCCChhhHHHHHHHHHHhhhcccc
Q 028820 119 PGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDCILSTIY 183 (203)
Q Consensus 119 ~G~v~~vrviGvL~miD~gE~D~KIIaV~~~Dp~~~~i~di~Dv~~~~l~~I~~fFr~YK~l~~~ 183 (203)
||++++||+||+|+|+|+||.|||||||+..||+|+++++++|++++++++|+|||.+||.++.-
T Consensus 80 pG~vi~~r~iG~l~m~D~~e~D~Kviav~~~dp~~~~i~di~d~~~~~~~~i~~ffe~yK~le~~ 144 (171)
T COG0221 80 PGCVIQARPIGVLKMIDEGEKDDKVIAVPKLDPRYEHIKDISDLPEHLLDEIQHFFETYKDLEKG 144 (171)
T ss_pred ceeEEEEEEEEEEEEeeCCCcceEEEEecCCCcchhhccchhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999873
No 10
>KOG1626 consensus Inorganic pyrophosphatase/Nucleosome remodeling factor, subunit NURF38 [Energy production and conversion]
Probab=94.49 E-value=0.049 Score=49.08 Aligned_cols=61 Identities=34% Similarity=0.493 Sum_probs=52.0
Q ss_pred CccCCCCCCCCCcccchhhhcccCCcccCcCCCCCCCCCCCCeeEEEEEeC-CCCCceEEEe
Q 028820 11 KTPVSQPPAHPPLNERILSSMSRRSVAAHPWHDLEIGPGAPKIFNCVIEIG-KGSKVKYELD 71 (203)
Q Consensus 11 ~~~~~~~g~~~~~~~r~~~~~~~~~~~~spwHdipl~~~~~~~vn~VVEIP-rgS~~KyEid 71 (203)
.-+..-+.-..+++-|++++|.+..-.+++||++-.....|...|+++||. +++.++++.|
T Consensus 11 ~~s~~~rvy~~~~~~~~iS~fhdipl~a~~~~~~nmvvEiPrwtnak~EIs~k~~~~pikqD 72 (279)
T KOG1626|consen 11 KYSLDYRVYFPKLNGRIISPFHDIPLAAHPWHDLNMVVEIPRWTNAKMEISKKEPFNPIKQD 72 (279)
T ss_pred cCCccceeeecCCCCccccccccCccccCccccEeecccccceeeeEEEEeccCCCCcceee
Confidence 334444556678889999999999999999999999999999999999999 8888888764
No 11
>PF07177 Neuralized: Neuralized; InterPro: IPR006573 NEUZ is a domain of unknown function found in neuralized proteins, i.e. proteins involved in the specification of the neuroblast during cellular differentiation. ; PDB: 2YUE_A 2E63_A.
Probab=42.21 E-value=28 Score=24.97 Aligned_cols=22 Identities=9% Similarity=0.149 Sum_probs=15.7
Q ss_pred cEEEeccccCCCceEEEEEEEe
Q 028820 108 DVLIIMQEPVLPGCFLRAKAIG 129 (203)
Q Consensus 108 Dvlvl~~~p~~~G~v~~vrviG 129 (203)
..||++++|+.+|+.+.+|+.-
T Consensus 30 ~giVFS~rPl~~~E~~~v~I~~ 51 (69)
T PF07177_consen 30 NGIVFSSRPLRIGEKFEVRIDE 51 (69)
T ss_dssp S-EEEESS-B-TT-EEEEEEEE
T ss_pred ceEEEecCCccCCCEEEEEEEe
Confidence 4688999999999999999853
No 12
>smart00588 NEUZ domain in neuralized proteins.
Probab=38.98 E-value=40 Score=26.65 Aligned_cols=44 Identities=18% Similarity=0.222 Sum_probs=29.4
Q ss_pred CcccEEEeccccCCCceEEEEEEEeeEeeeeCCCCCcEEEEEeCCCcc
Q 028820 105 DPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPE 152 (203)
Q Consensus 105 DPLDvlvl~~~p~~~G~v~~vrviGvL~miD~gE~D~KIIaV~~~Dp~ 152 (203)
+-=+.+|++++|+.+|+.+.+|+.-.-..- .| .==+++-..||.
T Consensus 28 ~f~~givFS~rPl~~~E~~~v~i~~~~~~w-~G---~l~~G~Ts~dP~ 71 (123)
T smart00588 28 DFCNALVFSARPLRINELFEVKIEKVVRKW-SG---ALRFGVTTCDPA 71 (123)
T ss_pred CcCceEEecCCCCcCCCEEEEEEEEecCCc-cC---ceEEEEecCCcc
Confidence 345789999999999999999987432110 00 112466667775
No 13
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=37.38 E-value=23 Score=25.24 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=20.7
Q ss_pred cCcCccccCCCCCcccEEEeccccCCCceEEEEEEEee
Q 028820 93 YGFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGL 130 (203)
Q Consensus 93 YGfIPqT~~gDgDPLDvlvl~~~p~~~G~v~~vrviGv 130 (203)
=||||.+-..++ ..+.+|+.+.|+++.+
T Consensus 30 ~Gfl~~~~~~~~----------~~~~~Gq~v~~~V~~v 57 (74)
T cd05694 30 TGFLPKKDAGNF----------SKLKVGQLLLCVVEKV 57 (74)
T ss_pred EEEEEHHHCCcc----------cccCCCCEEEEEEEEE
Confidence 377887754433 4578999999999863
No 14
>KOG1110 consensus Putative steroid membrane receptor Hpr6.6/25-Dx [General function prediction only]
Probab=34.76 E-value=27 Score=30.14 Aligned_cols=52 Identities=13% Similarity=0.084 Sum_probs=38.8
Q ss_pred cEEEEEeCCCccccCCCCCCCCChhhHHHHHHHHHHhhhccccCCceeeeeCC
Q 028820 141 DKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDCILSTIYNGSICFICEL 193 (203)
Q Consensus 141 ~KIIaV~~~Dp~~~~i~di~Dv~~~~l~~I~~fFr~YK~l~~~~~~~~~~~~~ 193 (203)
.|.||...-|. ...+.|++||....++.+.+|...||.--.+=|.++..-+.
T Consensus 108 SR~La~~s~d~-~d~~ddlsdL~a~e~eal~eWE~~fk~KY~~VG~L~~~~~e 159 (183)
T KOG1110|consen 108 SRGLAKMSFDL-SDETDDLSDLTAEELEALNEWETKFKAKYPVVGRLVKKGEE 159 (183)
T ss_pred HHHHHhcccch-hhccccccccCHHHHHHHHHHHHHHhhcCceeEEeecCCcc
Confidence 44555554443 56678999999999999999999999877777776655443
No 15
>KOG3456 consensus NADH:ubiquinone oxidoreductase, NDUFS6/13 kDa subunit [Energy production and conversion]
Probab=33.09 E-value=18 Score=29.03 Aligned_cols=41 Identities=27% Similarity=0.382 Sum_probs=29.9
Q ss_pred CCCcEEEEEeCCCccccCCCCCCCCChhhHHHHHHHHHHhhhccccCCceeeeeCCCce
Q 028820 138 EKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDCILSTIYNGSICFICELPFL 196 (203)
Q Consensus 138 E~D~KIIaV~~~Dp~~~~i~di~Dv~~~~l~~I~~fFr~YK~l~~~~~~~~~~~~~~~~ 196 (203)
|.|.+|+|...++|..++-. .|-.|..-+.-+|+-|+|-|.
T Consensus 75 e~d~RVV~CdGg~~aLGHPk------------------vyInLDk~~~~~CgYCGlrf~ 115 (120)
T KOG3456|consen 75 EVDGRVVACDGGTPALGHPK------------------VYINLDKPGPHICGYCGLRFV 115 (120)
T ss_pred hccceEEEecCCCCCCCCCe------------------EEEEcCCCCCcccccchhhhh
Confidence 56788888888887654422 356667777789999999875
No 16
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=29.28 E-value=43 Score=27.90 Aligned_cols=28 Identities=36% Similarity=0.574 Sum_probs=15.1
Q ss_pred EEeCCCCCceEEEeccCCCeEeeeeccccccccccc
Q 028820 58 IEIGKGSKVKYELDKKSGLIMVDRVLYSSVVYPHNY 93 (203)
Q Consensus 58 VEIPrgS~~KyEid~~~g~i~~Dr~l~~~~~yP~NY 93 (203)
+=|||||+..|.-. |..+.....||.|+
T Consensus 123 i~iPkGs~I~fst~--------~~a~~~Yv~yPa~W 150 (152)
T PF06249_consen 123 IFIPKGSTITFSTP--------DYARFFYVTYPANW 150 (152)
T ss_dssp EEE-TT-EEEEEEE--------EEEEEEEEEESTT-
T ss_pred EEECCCCEEEEecC--------CCEEEEEEECCCcc
Confidence 34788877777532 23334456789886
No 17
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=25.63 E-value=30 Score=31.02 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=22.9
Q ss_pred ccccCCCCCCCCChhhHHHHHHHHHHh
Q 028820 151 PEYRHYNDIKELPPHRLAEIRRFFEDC 177 (203)
Q Consensus 151 p~~~~i~di~Dv~~~~l~~I~~fFr~Y 177 (203)
|-|--++|+++||.-+-+.+++||+.-
T Consensus 237 pYy~~~~~~~~lp~~l~~~lrqwf~~~ 263 (266)
T cd01460 237 PYYVIVRDLNQLPSVLSDALRQWFELV 263 (266)
T ss_pred CeEEEecChhHhHHHHHHHHHHHHHHH
Confidence 456778899999999999999999864
No 18
>COG1430 Uncharacterized conserved protein [Function unknown]
Probab=24.76 E-value=68 Score=25.95 Aligned_cols=30 Identities=17% Similarity=0.320 Sum_probs=19.8
Q ss_pred CcCCCCCCCCCCCCeeEEEEEeCCCCCceEEE
Q 028820 39 HPWHDLEIGPGAPKIFNCVIEIGKGSKVKYEL 70 (203)
Q Consensus 39 spwHdipl~~~~~~~vn~VVEIPrgS~~KyEi 70 (203)
-||+.-|..+ ..-++.|+|.|+|..+++-+
T Consensus 82 ~P~~~~~~~~--~~~~~yvLEl~~G~~~~~~i 111 (126)
T COG1430 82 VPWSTYPCKS--YGPVRYVLELPAGWAARLGI 111 (126)
T ss_pred cccccCCCCC--CCCccEEEEecCCchhhcCC
Confidence 3666555432 34448999999999876643
No 19
>PF08437 Glyco_transf_8C: Glycosyl transferase family 8 C-terminal; InterPro: IPR013645 This domain is found at the C terminus of bacterial glucosyltransferase and galactosyltransferase proteins. ; GO: 0008918 lipopolysaccharide 3-alpha-galactosyltransferase activity, 0009103 lipopolysaccharide biosynthetic process
Probab=24.45 E-value=35 Score=23.73 Aligned_cols=13 Identities=23% Similarity=0.646 Sum_probs=10.5
Q ss_pred cccCcCCCCCCCC
Q 028820 36 VAAHPWHDLEIGP 48 (203)
Q Consensus 36 ~~~spwHdipl~~ 48 (203)
...|||.|+|+-+
T Consensus 11 ~~~SPWk~~pl~~ 23 (57)
T PF08437_consen 11 YKNSPWKDIPLLK 23 (57)
T ss_pred HHcCCCCCCCCcC
Confidence 4679999999953
No 20
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=23.47 E-value=94 Score=22.10 Aligned_cols=33 Identities=15% Similarity=0.485 Sum_probs=25.0
Q ss_pred CcCCCCCCCCCCCCeeEEEEEeCCCC-CceEEEe
Q 028820 39 HPWHDLEIGPGAPKIFNCVIEIGKGS-KVKYELD 71 (203)
Q Consensus 39 spwHdipl~~~~~~~vn~VVEIPrgS-~~KyEid 71 (203)
+.|..+++.....+.+.+.++.|.|+ .-||-+|
T Consensus 23 n~W~~~~m~~~~~G~w~~~~~l~~G~y~Ykf~vd 56 (82)
T cd02861 23 NNWNAIPMEREGDGLWVVTVELRPGRYEYKFVVD 56 (82)
T ss_pred CCCCcccCEECCCCcEEEEEeCCCCcEEEEEEEC
Confidence 46776777666668899999999998 5666665
No 21
>PF05182 Fip1: Fip1 motif; InterPro: IPR007854 This short motif is about 40 amino acids in length and is found in the Fip1 protein that is a component of a Saccharomyces cerevisiae pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase []. This region of Fip1 is needed for the interaction with the Yth1 subunit of the complex and for specific polyadenylation of the cleaved mRNA precursor [].
Probab=21.70 E-value=26 Score=23.67 Aligned_cols=10 Identities=50% Similarity=0.800 Sum_probs=9.2
Q ss_pred cccCcCcccc
Q 028820 91 HNYGFIPRTL 100 (203)
Q Consensus 91 ~NYGfIPqT~ 100 (203)
|||||=.+||
T Consensus 24 FNYGf~E~tW 33 (45)
T PF05182_consen 24 FNYGFNEETW 33 (45)
T ss_pred cCCCCCHHHH
Confidence 8999999888
No 22
>cd05695 S1_Rrp5_repeat_hs3 S1_Rrp5_repeat_hs3: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 3 (hs3). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=21.47 E-value=75 Score=21.82 Aligned_cols=32 Identities=13% Similarity=0.075 Sum_probs=20.4
Q ss_pred CcCccccCCCCCcccEEEeccccCCCceEEEEEEEeeE
Q 028820 94 GFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLM 131 (203)
Q Consensus 94 GfIPqT~~gDgDPLDvlvl~~~p~~~G~v~~vrviGvL 131 (203)
||+|.+.-.+. ... ..-+..|+.++||++++-
T Consensus 26 g~v~~~~l~~~-~~~-----~~~~~~G~~i~~kVi~id 57 (66)
T cd05695 26 GTVDFLHLDPE-KSS-----KSTYKEGQKVRARILYVD 57 (66)
T ss_pred EEEEHHHcCCc-cCc-----ccCcCCCCEEEEEEEEEe
Confidence 66666654321 111 445789999999999753
No 23
>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].
Probab=21.35 E-value=75 Score=23.66 Aligned_cols=17 Identities=12% Similarity=0.329 Sum_probs=15.0
Q ss_pred hhhHHHHHHHHHHhhhc
Q 028820 164 PHRLAEIRRFFEDCILS 180 (203)
Q Consensus 164 ~~~l~~I~~fFr~YK~l 180 (203)
|.++..+++|||.|..|
T Consensus 53 p~Li~~vee~yr~YrsL 69 (74)
T PF07765_consen 53 PELISLVEEFYRSYRSL 69 (74)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57899999999999875
Done!