Query 028821
Match_columns 203
No_of_seqs 122 out of 1250
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 03:04:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028821.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028821hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK08588 succinyl-diaminopimel 100.0 2.5E-27 5.3E-32 196.6 17.7 187 2-200 113-303 (377)
2 PRK06915 acetylornithine deace 99.9 1.8E-26 3.9E-31 194.1 18.1 166 2-175 147-312 (422)
3 TIGR01910 DapE-ArgE acetylorni 99.9 5.1E-26 1.1E-30 188.7 16.5 190 2-200 118-313 (375)
4 PRK13013 succinyl-diaminopimel 99.9 1.6E-25 3.4E-30 188.6 18.2 197 2-201 136-350 (427)
5 COG1473 AbgB Metal-dependent a 99.9 4.9E-26 1.1E-30 187.3 14.7 181 2-198 116-307 (392)
6 TIGR01892 AcOrn-deacetyl acety 99.9 5.9E-25 1.3E-29 181.4 18.0 161 2-174 111-272 (364)
7 PLN02280 IAA-amino acid hydrol 99.9 3.6E-25 7.8E-30 187.8 17.0 158 2-175 199-364 (478)
8 PRK05111 acetylornithine deace 99.9 7.9E-25 1.7E-29 182.0 18.0 164 2-176 124-287 (383)
9 PRK07522 acetylornithine deace 99.9 5.1E-25 1.1E-29 183.2 16.7 163 2-172 117-280 (385)
10 PRK08737 acetylornithine deace 99.9 7.8E-25 1.7E-29 180.8 17.1 151 11-173 117-268 (364)
11 PRK13009 succinyl-diaminopimel 99.9 7E-25 1.5E-29 181.7 16.5 166 2-178 112-283 (375)
12 TIGR01891 amidohydrolases amid 99.9 5E-25 1.1E-29 182.0 15.3 157 3-175 104-268 (363)
13 TIGR01246 dapE_proteo succinyl 99.9 9.2E-25 2E-29 180.8 16.2 187 2-200 109-301 (370)
14 PRK08652 acetylornithine deace 99.9 7.9E-25 1.7E-29 179.6 15.2 169 11-200 107-275 (347)
15 PRK08651 succinyl-diaminopimel 99.9 1.9E-24 4.2E-29 180.2 16.7 163 2-176 127-292 (394)
16 TIGR01900 dapE-gram_pos succin 99.9 4.2E-24 9E-29 177.1 17.8 156 8-172 124-279 (373)
17 TIGR03320 ygeY M20/DapE family 99.9 3.9E-24 8.5E-29 178.5 16.9 160 2-173 121-280 (395)
18 PRK13004 peptidase; Reviewed 99.9 4E-24 8.6E-29 178.7 16.4 158 2-171 123-280 (399)
19 PRK13007 succinyl-diaminopimel 99.9 6.7E-24 1.4E-28 174.5 17.1 179 10-200 112-290 (352)
20 TIGR03526 selenium_YgeY putati 99.9 7.3E-24 1.6E-28 176.9 17.0 160 2-173 121-280 (395)
21 PLN02693 IAA-amino acid hydrol 99.9 1.3E-23 2.9E-28 176.9 18.0 155 2-174 149-311 (437)
22 PRK00466 acetyl-lysine deacety 99.9 7.9E-24 1.7E-28 173.8 16.2 161 13-200 112-273 (346)
23 PRK13983 diaminopimelate amino 99.9 7.5E-24 1.6E-28 176.9 16.1 192 2-201 130-332 (400)
24 PRK06837 acetylornithine deace 99.9 1.6E-23 3.4E-28 176.5 17.8 190 2-200 151-351 (427)
25 PRK09290 allantoate amidohydro 99.9 7.6E-24 1.7E-28 177.7 14.2 162 2-175 105-313 (413)
26 PRK06133 glutamate carboxypept 99.9 1.4E-23 3E-28 176.0 15.2 151 2-172 149-302 (410)
27 PRK07338 hypothetical protein; 99.9 1.4E-23 3.1E-28 175.5 14.9 153 2-174 142-297 (402)
28 PRK12892 allantoate amidohydro 99.9 1.5E-23 3.3E-28 175.8 14.1 160 2-175 106-313 (412)
29 TIGR01880 Ac-peptdase-euk N-ac 99.9 2.3E-23 5E-28 174.1 13.6 166 2-176 125-299 (400)
30 PRK12893 allantoate amidohydro 99.9 3.6E-23 7.8E-28 173.6 13.5 159 2-175 108-312 (412)
31 PRK09133 hypothetical protein; 99.9 4.8E-23 1E-27 175.6 12.2 164 2-172 154-366 (472)
32 PRK04443 acetyl-lysine deacety 99.9 2.5E-22 5.3E-27 165.1 15.5 171 8-200 107-278 (348)
33 PRK12891 allantoate amidohydro 99.9 1E-22 2.2E-27 170.9 13.5 158 1-175 107-312 (414)
34 PRK08262 hypothetical protein; 99.9 7.2E-23 1.6E-27 175.1 12.3 194 2-200 167-407 (486)
35 PRK12890 allantoate amidohydro 99.9 1.4E-22 3E-27 170.2 13.8 163 2-176 106-315 (414)
36 PRK06446 hypothetical protein; 99.9 1.1E-22 2.4E-27 171.7 12.6 191 3-200 117-358 (436)
37 PRK08596 acetylornithine deace 99.9 8.8E-22 1.9E-26 165.6 17.2 162 2-175 131-303 (421)
38 TIGR01883 PepT-like peptidase 99.9 1.7E-22 3.7E-27 166.7 11.9 151 2-175 113-266 (361)
39 PRK07473 carboxypeptidase; Pro 99.9 8.1E-22 1.8E-26 163.5 15.1 148 2-171 125-275 (376)
40 TIGR01879 hydantase amidase, h 99.9 6E-22 1.3E-26 165.7 14.3 183 2-200 99-332 (401)
41 PRK08201 hypothetical protein; 99.9 5.7E-22 1.2E-26 168.4 12.4 194 2-200 133-380 (456)
42 PRK09104 hypothetical protein; 99.9 1.8E-21 3.9E-26 165.6 12.9 195 2-201 141-389 (464)
43 KOG2275 Aminoacylase ACY1 and 99.9 6.1E-21 1.3E-25 154.0 14.6 172 2-178 142-319 (420)
44 TIGR01902 dapE-lys-deAc N-acet 99.9 8.9E-21 1.9E-25 155.1 15.1 162 12-200 101-263 (336)
45 PRK07906 hypothetical protein; 99.9 4.2E-21 9E-26 161.8 12.6 189 2-200 118-348 (426)
46 TIGR01886 dipeptidase dipeptid 99.9 1.7E-20 3.7E-25 159.6 16.2 186 1-201 129-396 (466)
47 COG0624 ArgE Acetylornithine d 99.8 2.1E-20 4.5E-25 156.8 14.8 190 2-201 129-337 (409)
48 PRK07907 hypothetical protein; 99.8 2.5E-20 5.4E-25 158.0 13.7 188 9-200 141-372 (449)
49 TIGR03176 AllC allantoate amid 99.8 3.7E-20 7.9E-25 155.0 14.1 164 1-176 100-307 (406)
50 PRK07318 dipeptidase PepV; Rev 99.8 3.2E-20 7E-25 158.0 12.1 190 1-201 130-396 (466)
51 PRK07079 hypothetical protein; 99.8 1.4E-19 2.9E-24 154.3 15.8 187 8-200 147-381 (469)
52 PF07687 M20_dimer: Peptidase 99.8 1.5E-19 3.2E-24 124.8 10.5 110 62-176 1-110 (111)
53 PRK13381 peptidase T; Provisio 99.8 3.4E-19 7.4E-24 149.2 13.6 150 2-175 151-302 (404)
54 PRK05469 peptidase T; Provisio 99.8 7.1E-19 1.5E-23 147.5 12.7 150 2-175 153-304 (408)
55 TIGR01882 peptidase-T peptidas 99.8 1.4E-19 3.1E-24 151.8 7.0 151 2-175 155-306 (410)
56 TIGR01887 dipeptidaselike dipe 99.8 2.9E-18 6.3E-23 145.1 14.4 188 2-201 119-382 (447)
57 PRK13799 unknown domain/N-carb 99.8 4.2E-18 9.2E-23 148.4 15.2 162 1-176 282-492 (591)
58 PRK15026 aminoacyl-histidine d 99.8 1.8E-18 3.8E-23 147.4 12.6 143 2-172 125-289 (485)
59 PRK13590 putative bifunctional 99.8 4.9E-18 1.1E-22 148.0 15.3 160 1-176 282-490 (591)
60 PRK06156 hypothetical protein; 99.8 5.4E-18 1.2E-22 146.1 14.0 190 2-201 167-446 (520)
61 PRK07205 hypothetical protein; 99.8 1.3E-17 2.9E-22 141.2 15.8 187 2-200 129-372 (444)
62 TIGR01893 aa-his-dipept aminoa 99.7 7E-17 1.5E-21 137.9 13.5 118 10-154 126-265 (477)
63 PRK08554 peptidase; Reviewed 99.6 4.2E-15 9.2E-20 125.6 11.0 190 2-201 116-369 (438)
64 COG4187 RocB Arginine degradat 98.9 2.2E-09 4.9E-14 88.0 6.1 159 4-176 155-328 (553)
65 COG2195 PepD Di- and tripeptid 98.8 4.5E-09 9.8E-14 87.4 3.8 146 9-176 165-312 (414)
66 KOG2276 Metalloexopeptidases [ 98.7 1.1E-07 2.3E-12 77.6 9.9 169 1-176 144-367 (473)
67 PF01546 Peptidase_M20: Peptid 97.9 5E-06 1.1E-10 62.1 1.3 56 2-60 49-105 (189)
68 PRK15026 aminoacyl-histidine d 95.8 0.018 4E-07 49.7 5.5 70 124-202 344-413 (485)
69 TIGR03107 glu_aminopep glutamy 93.6 0.072 1.6E-06 44.1 3.4 40 10-57 197-236 (350)
70 PF04389 Peptidase_M28: Peptid 93.6 0.039 8.5E-07 40.8 1.7 52 2-56 39-90 (179)
71 PF05343 Peptidase_M42: M42 gl 93.3 0.052 1.1E-06 43.8 2.0 45 2-56 147-191 (292)
72 PRK09961 exoaminopeptidase; Pr 93.0 0.12 2.6E-06 42.7 3.8 39 10-56 185-223 (344)
73 COG1363 FrvX Cellulase M and r 93.0 0.081 1.8E-06 43.7 2.6 46 2-57 193-238 (355)
74 PRK09864 putative peptidase; P 92.7 0.13 2.7E-06 42.7 3.4 39 11-57 193-231 (356)
75 TIGR03106 trio_M42_hydro hydro 91.5 0.12 2.6E-06 42.7 2.0 26 2-27 196-221 (343)
76 PRK10199 alkaline phosphatase 91.3 0.13 2.9E-06 42.3 2.0 33 2-39 156-188 (346)
77 COG2234 Iap Predicted aminopep 74.6 2.1 4.5E-05 36.4 2.0 35 2-41 241-275 (435)
78 cd06406 PB1_P67 A PB1 domain i 64.2 18 0.00039 23.2 4.1 34 145-178 9-42 (80)
79 cd04870 ACT_PSP_1 CT domains f 49.4 60 0.0013 19.9 4.9 36 142-177 36-71 (75)
80 cd06411 PB1_p51 The PB1 domain 48.9 47 0.001 21.2 4.1 35 144-178 4-38 (78)
81 TIGR03884 sel_bind_Methan sele 45.4 65 0.0014 20.3 4.3 38 139-176 7-44 (74)
82 KOG2194 Aminopeptidases of the 44.1 11 0.00023 34.9 0.9 50 2-56 176-226 (834)
83 KOG2195 Transferrin receptor a 42.6 17 0.00036 33.2 1.9 34 3-39 387-420 (702)
84 cd04869 ACT_GcvR_2 ACT domains 41.6 84 0.0018 19.3 4.9 34 143-176 43-76 (81)
85 cd04871 ACT_PSP_2 ACT domains 33.1 93 0.002 19.8 3.9 35 142-177 46-80 (84)
86 PF11524 SeleniumBinding: Sele 27.6 1.3E+02 0.0028 19.0 3.5 38 138-175 12-49 (81)
87 PRK06156 hypothetical protein; 26.4 1.8E+02 0.0039 25.5 5.7 24 126-150 241-264 (520)
88 PF03822 NAF: NAF domain; Int 25.0 60 0.0013 19.7 1.7 27 151-177 35-61 (63)
89 PRK02813 putative aminopeptida 24.9 50 0.0011 28.3 1.9 45 12-56 252-311 (428)
90 COG4829 CatC1 Muconolactone de 21.9 1.8E+02 0.0039 18.9 3.5 27 146-173 4-30 (98)
91 PF03869 Arc: Arc-like DNA bin 21.3 1.6E+02 0.0035 16.8 3.0 22 148-174 6-27 (50)
92 PF05450 Nicastrin: Nicastrin; 21.2 80 0.0017 24.6 2.2 27 10-39 48-74 (234)
93 cd01789 Alp11_N Ubiquitin-like 20.3 2E+02 0.0043 18.3 3.6 25 146-170 12-36 (84)
94 PF03668 ATP_bind_2: P-loop AT 20.2 2.1E+02 0.0046 23.1 4.4 29 126-156 162-190 (284)
No 1
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.95 E-value=2.5e-27 Score=196.61 Aligned_cols=187 Identities=21% Similarity=0.255 Sum_probs=148.2
Q ss_pred ccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCCCCCceeeeeeeEEEEEEEeecCCCc
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~~~G~~~Hs 81 (203)
++|++.+..++++|.|+|++|||.|+ .|++++++++.+.+ +|++++.||+...++++++|..+++|+++|+++|+
T Consensus 113 ~~l~~~~~~~~~~i~l~~~~dEE~g~---~G~~~~~~~~~~~~--~d~~i~~ep~~~~i~~~~~G~~~~~i~~~G~~~Hs 187 (377)
T PRK08588 113 IELKEQGQLLNGTIRLLATAGEEVGE---LGAKQLTEKGYADD--LDALIIGEPSGHGIVYAHKGSMDYKVTSTGKAAHS 187 (377)
T ss_pred HHHHHcCCCCCCcEEEEEEcccccCc---hhHHHHHhcCccCC--CCEEEEecCCCceeEEEEEEEEEEEEEEEeechhc
Confidence 45777777889999999999999987 69999999876543 57899999988888899999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCceEeeEEEecCCCccceeCCeEEEEEEeecCCCCCHHH
Q 028821 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTD 161 (203)
Q Consensus 82 s~p~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~~~~~~~~~ 161 (203)
|.|+.|.||+..+++++..+..+.. .+... ....+..+++++.|+ ||...|+||++|++.+|+|++|+++.++
T Consensus 188 s~p~~g~nAi~~~~~~l~~l~~~~~-~~~~~-----~~~~~~~t~~v~~i~-gG~~~nvip~~~~~~~d~R~~p~~~~~~ 260 (377)
T PRK08588 188 SMPELGVNAIDPLLEFYNEQKEYFD-SIKKH-----NPYLGGLTHVVTIIN-GGEQVNSVPDEAELEFNIRTIPEYDNDQ 260 (377)
T ss_pred cCCccccCHHHHHHHHHHHHHHHhh-hhccc-----CccCCCCceeeeEEe-CCCcCCcCCCeEEEEEEeccCCCCCHHH
Confidence 9999999999999999999987542 22211 112234788999998 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhc----chhccccCCCCCCCCCCCCccccc
Q 028821 162 VMKRLQEYVDDINEN----IEKLDTRGPVSKYVLPDENIRGRQ 200 (203)
Q Consensus 162 ~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 200 (203)
+.++|+++++..... ++........+....+++++.+.+
T Consensus 261 v~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~ 303 (377)
T PRK08588 261 VISLLQEIINEVNQNGAAQLSLDIYSNHRPVASDKDSKLVQLA 303 (377)
T ss_pred HHHHHHHHHHHHhhccCCceEEEEecCCCCcCCCCCCHHHHHH
Confidence 999999999886532 331111222333444566665443
No 2
>PRK06915 acetylornithine deacetylase; Validated
Probab=99.95 E-value=1.8e-26 Score=194.08 Aligned_cols=166 Identities=18% Similarity=0.263 Sum_probs=137.2
Q ss_pred ccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCCCCCceeeeeeeEEEEEEEeecCCCc
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~~~G~~~Hs 81 (203)
++|++.+..+.++|.|+|++|||+|+ .|+..++..+ +++|++|+.||+...++++++|+.+++|+++|+++|+
T Consensus 147 ~~l~~~~~~~~~~v~~~~~~dEE~g~---~G~~~~~~~~----~~~d~~i~~ep~~~~i~~~~~G~~~~~i~v~G~~~H~ 219 (422)
T PRK06915 147 EALIESGIELKGDVIFQSVIEEESGG---AGTLAAILRG----YKADGAIIPEPTNMKFFPKQQGSMWFRLHVKGKAAHG 219 (422)
T ss_pred HHHHHcCCCCCCcEEEEEecccccCC---cchHHHHhcC----cCCCEEEECCCCCccceeecccEEEEEEEEEeecccc
Confidence 45777777788999999999999987 6988888764 3678999999998888999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCceEeeEEEecCCCccceeCCeEEEEEEeecCCCCCHHH
Q 028821 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTD 161 (203)
Q Consensus 82 s~p~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~~~~~~~~~ 161 (203)
|.|+.|.||+..+++++..+..+...............+..+.+++++.|+ ||...|+||++|++.+|+|++|+++.++
T Consensus 220 s~p~~g~nAi~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~t~~v~~i~-gG~~~nvvP~~a~~~~d~R~~p~~~~~~ 298 (422)
T PRK06915 220 GTRYEGVSAIEKSMFVIDHLRKLEEKRNDRITDPLYKGIPIPIPINIGKIE-GGSWPSSVPDSVILEGRCGIAPNETIEA 298 (422)
T ss_pred CCCCcCcCHHHHHHHHHHHHHHHHHHhccccCCCcccCCCCCceEeEEEee-CCCCCCccCcEEEEEEEEEECCCCCHHH
Confidence 999999999999999999998764211000000001111124688999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 028821 162 VMKRLQEYVDDINE 175 (203)
Q Consensus 162 ~~~~i~~~~~~~~~ 175 (203)
+.++|++.+++++.
T Consensus 299 v~~~i~~~l~~~~~ 312 (422)
T PRK06915 299 AKEEFENWIAELND 312 (422)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988765
No 3
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=99.94 E-value=5.1e-26 Score=188.66 Aligned_cols=190 Identities=19% Similarity=0.278 Sum_probs=147.4
Q ss_pred ccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCC-CCCceeeeeeeEEEEEEEeecCCC
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTA-DKQPCIGTGGMIPWKLHVTGKLFH 80 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~-~~~i~~~~~g~~~~~i~~~G~~~H 80 (203)
++|++.+.+++++|.|+|++|||.|+ .|++.+++++.+. ++|++|+.||+ ...+.++++|..+++|+++|+++|
T Consensus 118 ~~l~~~~~~~~~~i~~~~~~~EE~g~---~G~~~~~~~~~~~--~~d~~i~~~~~~~~~v~~~~~G~~~~~i~~~G~~~H 192 (375)
T TIGR01910 118 KAIREAGIKPNGNIILQSVVDEESGE---AGTLYLLQRGYFK--DADGVLIPEPSGGDNIVIGHKGSIWFKLRVKGKQAH 192 (375)
T ss_pred HHHHHcCCCCCccEEEEEEcCcccCc---hhHHHHHHcCCCC--CCCEEEECCCCCCCceEEEecceEEEEEEEeeeecc
Confidence 45667776789999999999999987 6999999876543 36889999988 467889999999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCceEeeEEEecCCCccceeCCeEEEEEEeecCCCCCHH
Q 028821 81 SGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVT 160 (203)
Q Consensus 81 ss~p~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~~~~~~~~ 160 (203)
+|.|+.|.||+..+++++..|.++........ .. .......+++++.++ ||...|+||++|++.+|+|+.|.++.+
T Consensus 193 s~~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~--~~-~~~~~~~t~~i~~i~-gG~~~nviP~~~~~~~diR~~~~~~~~ 268 (375)
T TIGR01910 193 ASFPQFGVNAIMKLAKLITELNELEEHIYARN--SY-GFIPGPITFNPGVIK-GGDWVNSVPDYCEFSIDVRIIPEENLD 268 (375)
T ss_pred cCCCCcchhHHHHHHHHHHHHHHHHHHhhhcc--cc-cccCCCccccceeEE-CCCCcCcCCCEEEEEEEeeeCCCCCHH
Confidence 99999999999999999999987642111100 00 011124788999998 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhc--ch-hccc-cCCC-CCCCCCCCCccccc
Q 028821 161 DVMKRLQEYVDDINEN--IE-KLDT-RGPV-SKYVLPDENIRGRQ 200 (203)
Q Consensus 161 ~~~~~i~~~~~~~~~~--~~-~~~~-~~~~-~~~~~~~~~~~~~~ 200 (203)
++.++|++.+++.+.. ++ .+.. .... +....+++++.+.+
T Consensus 269 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (375)
T TIGR01910 269 EVKQIIEDVVKALSKSDGWLYENEPVVKWSGPNETPPDSRLVKAL 313 (375)
T ss_pred HHHHHHHHHHHHHhhcCcHHhhCCCeeeecCCcCCCCCCHHHHHH
Confidence 9999999999887632 22 1111 1122 34556676665544
No 4
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.94 E-value=1.6e-25 Score=188.61 Aligned_cols=197 Identities=13% Similarity=0.165 Sum_probs=145.9
Q ss_pred ccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCCCC-CceeeeeeeEEEEEEEeecCCC
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-QPCIGTGGMIPWKLHVTGKLFH 80 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~-~i~~~~~g~~~~~i~~~G~~~H 80 (203)
++|++.+..++++|.|+|++|||+|+. .|.+++++.+.+...++|++|+.||+.. .+.++++|..+++|+++|+++|
T Consensus 136 ~~l~~~~~~~~~~v~~~~~~dEE~g~~--~g~~~l~~~~~~~~~~~d~~i~~ep~~~~~i~~~~~G~~~~~i~v~G~~~H 213 (427)
T PRK13013 136 EAFLAVYPDFAGSIEISGTADEESGGF--GGVAYLAEQGRFSPDRVQHVIIPEPLNKDRICLGHRGVWWAEVETRGRIAH 213 (427)
T ss_pred HHHHHhCCCCCccEEEEEEeccccCCh--hHHHHHHhcCCccccCCCEEEEecCCCCCceEEeeeeEEEEEEEEEccccc
Confidence 567777777889999999999999862 4788888777655334689999999874 6888999999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCC-Ccccc-CCCCCceEeeEEEecCCCcc----------ceeCCeEEEE
Q 028821 81 SGLPHKAINPLELAMEALKVIQTRFYKDFPPHP-KEQVY-GFETPSTMKPTQWSYPGGGI----------NQIPGECTVS 148 (203)
Q Consensus 81 ss~p~~g~NAi~~~~~~l~~l~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~i~~gg~~~----------nvip~~~~~~ 148 (203)
++.|+.|.||+..+++++..+.+.......... ..... ......+++++.|+ ||... |+||++|+++
T Consensus 214 ~~~p~~g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~-gG~~~~~~~~~~~~~n~IPd~a~~~ 292 (427)
T PRK13013 214 GSMPFLGDSAIRHMGAVLAEIEERLFPLLATRRTAMPVVPEGARQSTLNINSIH-GGEPEQDPDYTGLPAPCVADRCRIV 292 (427)
T ss_pred cCCCCcCcCHHHHHHHHHHHHHHHhhhhhhcccccCCCCCcccCCCceeeeEEe-CCCccccccccccccccCCceEEEE
Confidence 999999999999999999999764321111000 00000 00124678999998 77666 9999999999
Q ss_pred EEeecCCCCCHHHHHHHHHHHHHHhhh---cch-hccc-cCCCCCCCCCCCCcccccc
Q 028821 149 GDVRLTPFYNVTDVMKRLQEYVDDINE---NIE-KLDT-RGPVSKYVLPDENIRGRQL 201 (203)
Q Consensus 149 ~~iR~~~~~~~~~~~~~i~~~~~~~~~---~~~-~~~~-~~~~~~~~~~~~~~~~~~~ 201 (203)
+|+|++++++.+++.++|++.+++++. .++ .+.. ....+....+++++++.+.
T Consensus 293 idiR~~p~~~~~~v~~~i~~~i~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~lv~~l~ 350 (427)
T PRK13013 293 IDRRFLIEEDLDEVKAEITALLERLKRARPGFAYEIRDLFEVLPTMTDRDAPVVRSVA 350 (427)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHhhCCCceeEEEEcccCCcccCCCCCHHHHHHH
Confidence 999999999999999999999988643 222 1111 1223334456667766543
No 5
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=99.94 E-value=4.9e-26 Score=187.29 Aligned_cols=181 Identities=20% Similarity=0.309 Sum_probs=147.4
Q ss_pred ccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCCCC----Ccee--e--eeeeEEEEEE
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK----QPCI--G--TGGMIPWKLH 73 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~----~i~~--~--~~g~~~~~i~ 73 (203)
++|++...+++|+|+|+|||+||.++ |++.|+++|.++++ +|++|.+|+.++ .+.+ | ..+...++|+
T Consensus 116 ~~L~~~~~~~~Gtv~~ifQPAEE~~~----Ga~~mi~~G~~~~~-vD~v~g~H~~p~~~~g~v~~~~G~~~aa~d~~~i~ 190 (392)
T COG1473 116 LALAEHKDNLPGTVRLIFQPAEEGGG----GAKAMIEDGVFDDF-VDAVFGLHPGPGLPVGTVALRPGALMAAADEFEIT 190 (392)
T ss_pred HHHHhhhhhCCcEEEEEecccccccc----cHHHHHhcCCcccc-ccEEEEecCCCCCCCceEEeecccceeecceEEEE
Confidence 56787767899999999999999985 99999999999987 899999999644 3322 3 5778899999
Q ss_pred EeecCCCcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCceEeeEEEecCCCccceeCCeEEEEEEeec
Q 028821 74 VTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRL 153 (203)
Q Consensus 74 ~~G~~~Hss~p~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~ 153 (203)
++|+++|++.|+.++||+.+++.++..|+.+..+..+|.. +.+++++.++ +|.+.||||+++++.+++|+
T Consensus 191 ~~GkggH~a~Ph~~~d~i~aa~~~v~~lq~ivsr~~~p~~---------~~vv~vg~~~-aG~a~NVIpd~A~l~gtvR~ 260 (392)
T COG1473 191 FKGKGGHAAAPHLGIDALVAAAQLVTALQTIVSRNVDPLD---------SAVVTVGKIE-AGTAANVIPDSAELEGTIRT 260 (392)
T ss_pred EEeCCcccCCcccccCHHHHHHHHHHHHHHHHhcccCCcc---------CeEEEEEEec-CCCcCCcCCCeeEEEEEeec
Confidence 9999999999999999999999999999988765555431 3678999998 99999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhc--ch-hccccCCCCCCCCCCCCccc
Q 028821 154 TPFYNVTDVMKRLQEYVDDINEN--IE-KLDTRGPVSKYVLPDENIRG 198 (203)
Q Consensus 154 ~~~~~~~~~~~~i~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~ 198 (203)
+.....+.+.++|+++++.++.. ++ ++. ....++.+.+|..+..
T Consensus 261 ~~~~~~~~~~~~i~~ia~g~a~~~g~~~ei~-~~~~~p~~~Nd~~~~~ 307 (392)
T COG1473 261 FSDEVREKLEARIERIAKGIAAAYGAEAEID-YERGYPPVVNDPALTD 307 (392)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCeEEEE-ecCCCCCccCCHHHHH
Confidence 99888889999999988888664 22 121 2233455556655443
No 6
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=99.93 E-value=5.9e-25 Score=181.44 Aligned_cols=161 Identities=19% Similarity=0.225 Sum_probs=133.0
Q ss_pred ccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCCCCCceeeeeeeEEEEEEEeecCCCc
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~~~G~~~Hs 81 (203)
++|++. .++++|.|+|++|||.|+ .|++++++++. +++|++++.||+...++.+++|..+++|+++|+++|+
T Consensus 111 ~~l~~~--~~~~~v~~~~~~~EE~g~---~G~~~~~~~~~---~~~d~~i~~ep~~~~~~~~~~G~~~~~v~v~G~~~Hs 182 (364)
T TIGR01892 111 PDLAAE--QLKKPLHLALTADEEVGC---TGAPKMIEAGA---GRPRHAIIGEPTRLIPVRAHKGYASAEVTVRGRSGHS 182 (364)
T ss_pred HHHHhc--CcCCCEEEEEEeccccCC---cCHHHHHHhcC---CCCCEEEECCCCCceeEEeeceEEEEEEEEEcccccc
Confidence 455554 467899999999999987 69999998764 4578999999988777789999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCccccCCC-CCceEeeEEEecCCCccceeCCeEEEEEEeecCCCCCHH
Q 028821 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFE-TPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVT 160 (203)
Q Consensus 82 s~p~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~~~~~~~~ 160 (203)
+.|+.|.||+..+++++..|.++... ..... ....+. ..++++++.|+ ||...|+||++|++.+|+|++|+++.+
T Consensus 183 ~~p~~g~nAi~~~~~~i~~l~~~~~~-~~~~~--~~~~~~~~~~~~~i~~i~-gg~~~nviP~~~~~~~diR~~p~~~~~ 258 (364)
T TIGR01892 183 SYPDSGVNAIFRAGRFLQRLVHLADT-LLRED--LDEGFTPPYTTLNIGVIQ-GGKAVNIIPGACEFVFEWRPIPGMDPE 258 (364)
T ss_pred cCCccCcCHHHHHHHHHHHHHHHHHH-hccCC--CCccCCCCCceEEEeeee-cCCCCcccCCeEEEEEEeecCCCCCHH
Confidence 99999999999999999999765321 11000 001111 13688999998 899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 028821 161 DVMKRLQEYVDDIN 174 (203)
Q Consensus 161 ~~~~~i~~~~~~~~ 174 (203)
++.++|++.++...
T Consensus 259 ~v~~~i~~~~~~~~ 272 (364)
T TIGR01892 259 ELLQLLETIAQALV 272 (364)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998864
No 7
>PLN02280 IAA-amino acid hydrolase
Probab=99.93 E-value=3.6e-25 Score=187.85 Aligned_cols=158 Identities=21% Similarity=0.330 Sum_probs=129.9
Q ss_pred ccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCCCCC--cee------eeeeeEEEEEE
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQ--PCI------GTGGMIPWKLH 73 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~~--i~~------~~~g~~~~~i~ 73 (203)
++|++.+.+++++|.|+|++|||+| .|+++++++|.+++ +|+++..|++... .++ ..+|..+++|+
T Consensus 199 ~~L~~~~~~~~g~V~~if~pdEE~g----~Ga~~li~~g~~~~--~d~~~~~h~~~~~p~g~ig~~~~~~~~G~~~~~I~ 272 (478)
T PLN02280 199 KILKSREHLLKGTVVLLFQPAEEAG----NGAKRMIGDGALDD--VEAIFAVHVSHEHPTAVIGSRPGPLLAGCGFFRAV 272 (478)
T ss_pred HHHHhccccCCceEEEEeccccccc----chHHHHHHCCCCcC--CCEEEEEecCCCCCCceeEecccccccceeEEEEE
Confidence 4566666678999999999999986 39999999988764 4677877765322 222 34599999999
Q ss_pred EeecCCCcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCceEeeEEEecCCCccceeCCeEEEEEEeec
Q 028821 74 VTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRL 153 (203)
Q Consensus 74 ~~G~~~Hss~p~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~ 153 (203)
++|+++|++.|+.|+||+..+++++..++.+..+..++. .+.+++++.|+ ||...|+||++|++.+|+|+
T Consensus 273 v~Gk~aHas~P~~G~NAI~~aa~li~~l~~l~~r~~~~~---------~~~tvnvg~I~-GG~~~NvIPd~~~l~~diR~ 342 (478)
T PLN02280 273 ISGKKGRAGSPHHSVDLILAASAAVISLQGIVSREANPL---------DSQVVSVTTMD-GGNNLDMIPDTVVLGGTFRA 342 (478)
T ss_pred EECcchhcCCcccCcCHHHHHHHHHHHHHHHHhcccCCC---------CCcEEEEEEEE-ccCCCCEeCCEEEEEEEEec
Confidence 999999999999999999999999999987643221211 24678999999 99999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhh
Q 028821 154 TPFYNVTDVMKRLQEYVDDINE 175 (203)
Q Consensus 154 ~~~~~~~~~~~~i~~~~~~~~~ 175 (203)
++..+.+++.++|++.++.++.
T Consensus 343 ~~~e~~e~l~~~I~~~~~~~a~ 364 (478)
T PLN02280 343 FSNTSFYQLLKRIQEVIVEQAG 364 (478)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988653
No 8
>PRK05111 acetylornithine deacetylase; Provisional
Probab=99.93 E-value=7.9e-25 Score=181.95 Aligned_cols=164 Identities=21% Similarity=0.247 Sum_probs=133.0
Q ss_pred ccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCCCCCceeeeeeeEEEEEEEeecCCCc
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~~~G~~~Hs 81 (203)
++|++. .++++|.|+|++|||+|+ .|++++++.+. +++|+++++||+...++++++|..+++|+++|+++|+
T Consensus 124 ~~l~~~--~~~~~i~~~~~~~EE~g~---~G~~~~~~~~~---~~~d~~i~~ep~~~~~~~~~~G~~~~~i~v~G~~~H~ 195 (383)
T PRK05111 124 RDIDLT--KLKKPLYILATADEETSM---AGARAFAEATA---IRPDCAIIGEPTSLKPVRAHKGHMSEAIRITGQSGHS 195 (383)
T ss_pred HHHhhc--CCCCCeEEEEEeccccCc---ccHHHHHhcCC---CCCCEEEEcCCCCCceeecccceEEEEEEEEeechhc
Confidence 345543 357899999999999987 69999998754 3568899999998778889999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCceEeeEEEecCCCccceeCCeEEEEEEeecCCCCCHHH
Q 028821 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTD 161 (203)
Q Consensus 82 s~p~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~~~~~~~~~ 161 (203)
|.|+.|.||+..+++++..+..+........ ......+ ...+++++.|+ ||...|+||++|++++|+|++|+++.++
T Consensus 196 ~~p~~g~nai~~~~~~i~~l~~~~~~~~~~~-~~~~~~~-~~~t~~i~~i~-gg~~~NvVP~~~~~~~diR~~p~~~~~~ 272 (383)
T PRK05111 196 SDPALGVNAIELMHDVIGELLQLRDELQERY-HNPAFTV-PYPTLNLGHIH-GGDAPNRICGCCELHFDIRPLPGMTLED 272 (383)
T ss_pred cCCccCcCHHHHHHHHHHHHHHHHHHHhccC-CCccCCC-CCCceeEeeee-cCCcCcccCCceEEEEEEecCCCCCHHH
Confidence 9999999999999999999876532110100 0000111 23678999999 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 028821 162 VMKRLQEYVDDINEN 176 (203)
Q Consensus 162 ~~~~i~~~~~~~~~~ 176 (203)
+.++|++.++++..+
T Consensus 273 v~~~i~~~i~~~~~~ 287 (383)
T PRK05111 273 LRGLLREALAPVSER 287 (383)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999887553
No 9
>PRK07522 acetylornithine deacetylase; Provisional
Probab=99.93 E-value=5.1e-25 Score=183.16 Aligned_cols=163 Identities=20% Similarity=0.299 Sum_probs=133.0
Q ss_pred ccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCCCCCceeeeeeeEEEEEEEeecCCCc
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~~~G~~~Hs 81 (203)
++|++. .++++|.|+|++|||.|+ .|++++++......+++|+++..+|+...++++++|..+++|+++|+++|+
T Consensus 117 ~~l~~~--~~~~~i~~~~~~dEE~g~---~G~~~l~~~~~~~~~~~d~~i~~ep~~~~~~~~~~G~~~~~i~v~G~~~Hs 191 (385)
T PRK07522 117 PELAAA--PLRRPLHLAFSYDEEVGC---LGVPSMIARLPERGVKPAGCIVGEPTSMRPVVGHKGKAAYRCTVRGRAAHS 191 (385)
T ss_pred HHHHhC--CCCCCEEEEEEeccccCC---ccHHHHHHHhhhcCCCCCEEEEccCCCCeeeeeecceEEEEEEEEeecccc
Confidence 455554 467899999999999987 699999976332345678999999998888999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCC-CceEeeEEEecCCCccceeCCeEEEEEEeecCCCCCHH
Q 028821 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET-PSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVT 160 (203)
Q Consensus 82 s~p~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~~~~~~~~ 160 (203)
|.|+.|.||+..+++++..|+++..+...+. .....+.. .++++++.|+ ||...|+||++|++.+|+|+++.++.+
T Consensus 192 ~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~--~~~~~~~~~~~t~~i~~i~-gG~~~nviP~~a~~~~diR~~~~~~~~ 268 (385)
T PRK07522 192 SLAPQGVNAIEYAARLIAHLRDLADRLAAPG--PFDALFDPPYSTLQTGTIQ-GGTALNIVPAECEFDFEFRNLPGDDPE 268 (385)
T ss_pred CCCccCcCHHHHHHHHHHHHHHHHHHHhhcC--CCCcCCCCCcceeEEeeee-cCccccccCCceEEEEEEccCCCCCHH
Confidence 9999999999999999999987642211100 00011211 2678999998 899999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 028821 161 DVMKRLQEYVDD 172 (203)
Q Consensus 161 ~~~~~i~~~~~~ 172 (203)
++.+.|++.+++
T Consensus 269 ~i~~~i~~~i~~ 280 (385)
T PRK07522 269 AILARIRAYAEA 280 (385)
T ss_pred HHHHHHHHHHHh
Confidence 999999999987
No 10
>PRK08737 acetylornithine deacetylase; Provisional
Probab=99.93 E-value=7.8e-25 Score=180.76 Aligned_cols=151 Identities=13% Similarity=0.093 Sum_probs=124.8
Q ss_pred CceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCCCCCceeeeeeeEEEEEEEeecCCCcCCC-CCCCC
Q 028821 11 LKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLP-HKAIN 89 (203)
Q Consensus 11 ~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~~~G~~~Hss~p-~~g~N 89 (203)
+.++|.|+|++|||.|+. .|++.+++.+. ++|++|++||+...++++++|..+++|+++|+++|+|.| +.|.|
T Consensus 117 ~~~~v~~~~~~dEE~g~~--~g~~~~~~~~~----~~~~~iv~Ept~~~~~~~~kG~~~~~v~v~Gk~aHas~p~~~G~N 190 (364)
T PRK08737 117 GDGDAAFLFSSDEEANDP--RCVAAFLARGI----PYEAVLVAEPTMSEAVLAHRGISSVLMRFAGRAGHASGKQDPSAS 190 (364)
T ss_pred cCCCEEEEEEcccccCch--hhHHHHHHhCC----CCCEEEEcCCCCceeEEecceeEEEEEEEEeeccccCCCcccCCC
Confidence 467999999999999862 48899988653 468999999999889999999999999999999999998 68999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCceEeeEEEecCCCccceeCCeEEEEEEeecCCCCCHHHHHHHHHHH
Q 028821 90 PLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEY 169 (203)
Q Consensus 90 Ai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~~~~~~~~~~~~~i~~~ 169 (203)
||..+++++..+.+.......+. ... ..+.+++++.|+ ||.+.|+||++|++.+|+|++|+.+.+++.++|++.
T Consensus 191 AI~~~~~~l~~~~~~~~~~~~~~----~~~-~~~~t~~vg~i~-GG~~~NvVP~~a~~~~d~R~~p~~~~e~v~~~i~~~ 264 (364)
T PRK08737 191 ALHQAMRWGGQALDHVESLAHAR----FGG-LTGLRFNIGRVE-GGIKANMIAPAAELRFGFRPLPSMDVDGLLATFAGF 264 (364)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhc----cCC-CCCCceEEeeEe-cCCCCCcCCCceEEEEEeeeCCCCCHHHHHHHHHHH
Confidence 99999999988654422111110 000 113588999999 999999999999999999999999999999999877
Q ss_pred HHHh
Q 028821 170 VDDI 173 (203)
Q Consensus 170 ~~~~ 173 (203)
++..
T Consensus 265 ~~~~ 268 (364)
T PRK08737 265 AEPA 268 (364)
T ss_pred HHHc
Confidence 7664
No 11
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.93 E-value=7e-25 Score=181.74 Aligned_cols=166 Identities=21% Similarity=0.216 Sum_probs=133.2
Q ss_pred ccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCCCC-----CceeeeeeeEEEEEEEee
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-----QPCIGTGGMIPWKLHVTG 76 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~-----~i~~~~~g~~~~~i~~~G 76 (203)
++|++.+..++++|+|+|++|||.++. .|++.+++.....+.++|++++.||+.. .++++++|..+++|+++|
T Consensus 112 ~~l~~~~~~~~~~i~~~~~~~EE~~~~--~G~~~~~~~~~~~~~~~d~~i~~ep~~~~~~~~~i~~g~~g~~~~~i~v~G 189 (375)
T PRK13009 112 ERFVAAHPDHKGSIAFLITSDEEGPAI--NGTVKVLEWLKARGEKIDYCIVGEPTSTERLGDVIKNGRRGSLTGKLTVKG 189 (375)
T ss_pred HHHHHhcCCCCceEEEEEEeecccccc--cCHHHHHHHHHHcCcCCCEEEEcCCCcccCCCCeEEEecceEEEEEEEEEe
Confidence 456666667889999999999998652 4999988653323446789999998753 256789999999999999
Q ss_pred cCCCcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCceEeeEEEecCCC-ccceeCCeEEEEEEeecCC
Q 028821 77 KLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGG-GINQIPGECTVSGDVRLTP 155 (203)
Q Consensus 77 ~~~Hss~p~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~-~~nvip~~~~~~~~iR~~~ 155 (203)
+++|++.|+.|.||+..+++++..|.....+.. ..++.+.+++++.|+ +|. ..|+||++|++++|+|++|
T Consensus 190 ~~~Ha~~p~~g~nAi~~~~~~l~~l~~~~~~~~--------~~~~~~~~~~i~~i~-~G~~~~nvip~~~~~~~diR~~~ 260 (375)
T PRK13009 190 VQGHVAYPHLADNPIHLAAPALAELAATEWDEG--------NEFFPPTSLQITNID-AGTGATNVIPGELEAQFNFRFST 260 (375)
T ss_pred cCcccCCCCcccCHHHHHHHHHHHHHhhhccCC--------CccCCCceEEEEEEe-cCCCCCcccCCcEEEEEEEecCC
Confidence 999999999999999999999999876432110 112235678999998 664 7899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhcch
Q 028821 156 FYNVTDVMKRLQEYVDDINENIE 178 (203)
Q Consensus 156 ~~~~~~~~~~i~~~~~~~~~~~~ 178 (203)
..+.+++.++|++.+++...+++
T Consensus 261 ~~~~e~i~~~i~~~~~~~~~~~~ 283 (375)
T PRK13009 261 EHTAESLKARVEAILDKHGLDYT 283 (375)
T ss_pred CCCHHHHHHHHHHHHHhcCCCeE
Confidence 99999999999999987544444
No 12
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=99.93 E-value=5e-25 Score=181.99 Aligned_cols=157 Identities=21% Similarity=0.319 Sum_probs=128.7
Q ss_pred cccccccCCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCCCCC--------ceeeeeeeEEEEEEE
Q 028821 3 KLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQ--------PCIGTGGMIPWKLHV 74 (203)
Q Consensus 3 ~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~~--------i~~~~~g~~~~~i~~ 74 (203)
.|++.+..++++|.|+|++|||.+ .|++++++++.+++ .|++|+.||+... ..++++|..+++|++
T Consensus 104 ~l~~~~~~~~~~i~~~~~~dEE~~----~G~~~~~~~~~~~~--~d~~i~~e~~~~~~~~~~~~~~~~~~~g~~~~~i~~ 177 (363)
T TIGR01891 104 LLKKLADLLEGTVRLIFQPAEEGG----GGATKMIEDGVLDD--VDAILGLHPDPSIPAGTVGLRPGTIMAAADKFEVTI 177 (363)
T ss_pred HHHhchhhCCceEEEEEeecCcCc----chHHHHHHCCCCCC--cCEEEEECCCCCCCCeEEEECCCcceeecceEEEEE
Confidence 455555567899999999999985 49999998776543 4789998886431 124578899999999
Q ss_pred eecCCCcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCceEeeEEEecCCCccceeCCeEEEEEEeecC
Q 028821 75 TGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLT 154 (203)
Q Consensus 75 ~G~~~Hss~p~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~~ 154 (203)
+|+++|++.|+.|.||+..|++++.+++++.....++. .+.+++++.++ ||.+.|+||++|++.+|+|++
T Consensus 178 ~G~~~Has~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~---------~~~~~~i~~i~-gG~~~nvvP~~~~~~~diR~~ 247 (363)
T TIGR01891 178 HGKGAHAARPHLGRDALDAAAQLVVALQQIVSRNVDPS---------RPAVVTVGIIE-AGGAPNVIPDKASMSGTVRSL 247 (363)
T ss_pred EeecccccCcccccCHHHHHHHHHHHHHHHhhccCCCC---------CCcEEEEEEEE-cCCCCcEECCeeEEEEEEEeC
Confidence 99999999999999999999999999987532221111 13678999999 888999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhh
Q 028821 155 PFYNVTDVMKRLQEYVDDINE 175 (203)
Q Consensus 155 ~~~~~~~~~~~i~~~~~~~~~ 175 (203)
+..+.+++.+.|++.+++++.
T Consensus 248 ~~~~~e~~~~~i~~~~~~~~~ 268 (363)
T TIGR01891 248 DPEVRDQIIDRIERIVEGAAA 268 (363)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988754
No 13
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=99.93 E-value=9.2e-25 Score=180.82 Aligned_cols=187 Identities=19% Similarity=0.186 Sum_probs=139.9
Q ss_pred ccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCCCC-----CceeeeeeeEEEEEEEee
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-----QPCIGTGGMIPWKLHVTG 76 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~-----~i~~~~~g~~~~~i~~~G 76 (203)
+.|++.+..++++|+|+|++|||.++. .|++.+++.....+..+|++|+.||+.. .++++++|..+++++++|
T Consensus 109 ~~l~~~~~~~~~~v~~~~~~dEE~~~~--~G~~~~~~~~~~~~~~~d~~i~~ep~~~~~~~~~i~~~~~G~~~~~v~v~G 186 (370)
T TIGR01246 109 ERFVKKNPDHKGSISLLITSDEEGTAI--DGTKKVVETLMARDELIDYCIVGEPSSVKKLGDVIKNGRRGSITGNLTIKG 186 (370)
T ss_pred HHHHHhcCCCCCcEEEEEEeccccCCC--cCHHHHHHHHHhcCCCCCEEEEcCCCCcccCCceEEEeeeEEEEEEEEEEc
Confidence 345566667889999999999998752 4999988642222346789999998753 367789999999999999
Q ss_pred cCCCcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCceEeeEEEecCCC-ccceeCCeEEEEEEeecCC
Q 028821 77 KLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGG-GINQIPGECTVSGDVRLTP 155 (203)
Q Consensus 77 ~~~Hss~p~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~-~~nvip~~~~~~~~iR~~~ 155 (203)
+++|++.|+.|.||+..+++++..+..... .+. ..+..+.+++++.|+ +|. ..|+||++|++.+|+|++|
T Consensus 187 ~~~H~~~p~~g~nAi~~~~~~i~~l~~~~~---~~~-----~~~~~~~t~~i~~i~-~g~~~~nvvP~~~~~~~diR~~~ 257 (370)
T TIGR01246 187 IQGHVAYPHLANNPIHKAAPALAELTAIKW---DEG-----NEFFPPTSLQITNIH-AGTGANNVIPGELYVQFNLRFST 257 (370)
T ss_pred cCcccCCcccCCCHHHHHHHHHHHHhhhhh---ccC-----CccCCCCceEeeeee-cCCCCCcccCCceEEEEEEecCC
Confidence 999999999999999999999998875422 110 112235688999998 664 6899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhcchhccccCCCCCCCCCCCCccccc
Q 028821 156 FYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGRQ 200 (203)
Q Consensus 156 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (203)
+++.+++.++|++.++.....++... ....+++..++.++...+
T Consensus 258 ~~~~~~v~~~i~~~~~~~~~~~~v~~-~~~~~p~~~~~~~~~~~~ 301 (370)
T TIGR01246 258 EVSDEILKQRVEAILDQHGLDYDLEW-SLSGEPFLTNDGKLIDKA 301 (370)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEE-ecCCcceeCCCCHHHHHH
Confidence 99999999999999887543333111 112234444466655443
No 14
>PRK08652 acetylornithine deacetylase; Provisional
Probab=99.93 E-value=7.9e-25 Score=179.58 Aligned_cols=169 Identities=20% Similarity=0.236 Sum_probs=134.5
Q ss_pred CceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCCCCCceeeeeeeEEEEEEEeecCCCcCCCCCCCCH
Q 028821 11 LKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLPHKAINP 90 (203)
Q Consensus 11 ~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~~~G~~~Hss~p~~g~NA 90 (203)
++++|.|+|++|||.|+ .|++++++. +.+|++|+.||+.+.+.++++|..+++|+++|+++|++.|+.|.||
T Consensus 107 ~~~~v~~~~~~dEE~g~---~G~~~~~~~-----~~~d~~i~~ep~~~~i~~~~~g~~~~~i~~~G~~~H~s~p~~g~nA 178 (347)
T PRK08652 107 EDLNVGIAFVSDEEEGG---RGSALFAER-----YRPKMAIVLEPTDLKVAIAHYGNLEAYVEVKGKPSHGACPESGVNA 178 (347)
T ss_pred cCCCEEEEEecCcccCC---hhHHHHHHh-----cCCCEEEEecCCCCceeeecccEEEEEEEEEeeecccCCCCcCcCH
Confidence 46799999999999987 699999864 2458999999988888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCceEeeEEEecCCCccceeCCeEEEEEEeecCCCCCHHHHHHHHHHHH
Q 028821 91 LELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYV 170 (203)
Q Consensus 91 i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~~~~~~~~~~~~~i~~~~ 170 (203)
+..+++++..+..+.... .. .+. .+++++.+. ||...|++|++|++++|+|+++.++.+++.++|++.+
T Consensus 179 i~~~a~~i~~l~~~~~~~-~~-------~~~--~~~~~~~i~-gg~~~nviP~~~~~~~diR~~~~~~~~~v~~~i~~~~ 247 (347)
T PRK08652 179 IEKAFEMLEKLKELLKAL-GK-------YFD--PHIGIQEII-GGSPEYSIPALCRLRLDARIPPEVEVEDVLDEIDPIL 247 (347)
T ss_pred HHHHHHHHHHHHHHHHhh-hc-------ccC--CCCcceeee-cCCCCCccCCcEEEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 999999999998754211 11 011 234666787 8889999999999999999999999999999999999
Q ss_pred HHhhhcchhccccCCCCCCCCCCCCccccc
Q 028821 171 DDINENIEKLDTRGPVSKYVLPDENIRGRQ 200 (203)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (203)
++...+++.... ..+.++.+++++.+.+
T Consensus 248 ~~~~v~~~~~~~--~~~~~~~~~~~lv~~l 275 (347)
T PRK08652 248 DEYTVKYEYTEI--WDGFELDEDEEIVQLL 275 (347)
T ss_pred HhcCceEEEecc--CCcccCCCCCHHHHHH
Confidence 876444432111 2334456777766543
No 15
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.93 E-value=1.9e-24 Score=180.23 Aligned_cols=163 Identities=21% Similarity=0.276 Sum_probs=131.6
Q ss_pred ccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCCCC-CceeeeeeeEEEEEEEeecCCC
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-QPCIGTGGMIPWKLHVTGKLFH 80 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~-~i~~~~~g~~~~~i~~~G~~~H 80 (203)
++|++.+ +++|+|+|++|||+|+ .|++++++++.+ ++|++++.|++.. .++++++|..+++|+++|+++|
T Consensus 127 ~~l~~~~---~~~v~~~~~~~EE~g~---~G~~~~~~~~~~---~~d~~i~~~~~~~~~i~~~~~G~~~~~i~v~G~~~H 197 (394)
T PRK08651 127 ERLDPAG---DGNIELAIVPDEETGG---TGTGYLVEEGKV---TPDYVIVGEPSGLDNICIGHRGLVWGVVKVYGKQAH 197 (394)
T ss_pred HHHHhcC---CCCEEEEEecCccccc---hhHHHHHhccCC---CCCEEEEecCCCCCceEEecccEEEEEEEEEEeccc
Confidence 3455443 7899999999999987 699999987543 3688999999876 7889999999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCceEeeEE--EecCCCccceeCCeEEEEEEeecCCCCC
Q 028821 81 SGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQ--WSYPGGGINQIPGECTVSGDVRLTPFYN 158 (203)
Q Consensus 81 ss~p~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~gg~~~nvip~~~~~~~~iR~~~~~~ 158 (203)
++.|+.|.||+..+++++..|.+...+...... .........+++++. ++ ||...|++|+.|++.+|+|++|+.+
T Consensus 198 ~~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~--~~~~~~~~~~~~ig~~~i~-gG~~~nviP~~a~~~~diR~~~~~~ 274 (394)
T PRK08651 198 ASTPWLGINAFEAAAKIAERLKSSLSTIKSKYE--YDDERGAKPTVTLGGPTVE-GGTKTNIVPGYCAFSIDRRLIPEET 274 (394)
T ss_pred cCCCccccCHHHHHHHHHHHHHHHHHhhhcccc--ccccccCCCceeecceeee-CCCCCCccCCEEEEEEEeeeCCCCC
Confidence 999999999999999999999765321111100 000011235678888 87 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 028821 159 VTDVMKRLQEYVDDINEN 176 (203)
Q Consensus 159 ~~~~~~~i~~~~~~~~~~ 176 (203)
.+++.++|++.+++++.+
T Consensus 275 ~e~i~~~i~~~~~~~~~~ 292 (394)
T PRK08651 275 AEEVRDELEALLDEVAPE 292 (394)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 999999999999887543
No 16
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=99.92 E-value=4.2e-24 Score=177.07 Aligned_cols=156 Identities=15% Similarity=0.134 Sum_probs=127.4
Q ss_pred ccCCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCCCCCceeeeeeeEEEEEEEeecCCCcCCCCCC
Q 028821 8 KLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLPHKA 87 (203)
Q Consensus 8 ~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~~~G~~~Hss~p~~g 87 (203)
+..++++|.|+|++|||+++. ..|++.+++... ..+++|++|++||+.+.++++++|..+++|+++|+++|+|.|+.|
T Consensus 124 ~~~~~~~i~~~~~~dEE~~~~-~~G~~~~~~~~~-~~~~~d~~iv~Ept~~~i~~g~~G~~~~~i~v~G~~~H~s~p~~g 201 (373)
T TIGR01900 124 ETELKHDLTLIAYDCEEVAAE-KNGLGHIRDAHP-DWLAADFAIIGEPTGGGIEAGCNGNIRFDVTAHGVAAHSARAWLG 201 (373)
T ss_pred ccCCCCCEEEEEEecccccCC-CCCHHHHHHhCc-ccccCCEEEEECCCCCcccccceeeEEEEEEEEeeccccCCCCCC
Confidence 446789999999999998641 139999987632 113578999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCceEeeEEEecCCCccceeCCeEEEEEEeecCCCCCHHHHHHHHH
Q 028821 88 INPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQ 167 (203)
Q Consensus 88 ~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~~~~~~~~~~~~~i~ 167 (203)
.||+..+++++..|.++....... ..+....+++++.|+ ||.+.|+||++|++.+|+|++|+++.+++.+.|+
T Consensus 202 ~NAi~~~~~~i~~l~~l~~~~~~~------~~~~~~~t~~v~~I~-GG~~~nvVP~~a~~~~diR~~p~~~~e~~~~~i~ 274 (373)
T TIGR01900 202 DNAIHKAADIINKLAAYEAAEVNI------DGLDYREGLNATFCE-GGKANNVIPDEARMHLNFRFAPDKDLAEAKALMM 274 (373)
T ss_pred CCHHHHHHHHHHHHHHhhcccccc------cCCcccceEEEEEEe-CCCCCcccCCeEEEEEEEecCCCcCHHHHHHHHH
Confidence 999999999999997653211110 011113678999998 8999999999999999999999999999999997
Q ss_pred HHHHH
Q 028821 168 EYVDD 172 (203)
Q Consensus 168 ~~~~~ 172 (203)
+.++.
T Consensus 275 ~~~~~ 279 (373)
T TIGR01900 275 GADAG 279 (373)
T ss_pred hhhhh
Confidence 66433
No 17
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=99.92 E-value=3.9e-24 Score=178.52 Aligned_cols=160 Identities=16% Similarity=0.157 Sum_probs=129.1
Q ss_pred ccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCCCCCceeeeeeeEEEEEEEeecCCCc
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~~~G~~~Hs 81 (203)
++|++.+..+.++|.|++++|||.++ +.|.+.+++.. ++.+|++|+.||+...++++++|..+++|+++|+++|+
T Consensus 121 ~~l~~~g~~~~~~i~~~~~~dEE~~~--g~~~~~~~~~~---~~~~d~~iv~ep~~~~i~~g~~G~~~~~v~~~G~~~Hs 195 (395)
T TIGR03320 121 KIIKDLGLLDDYTLLVTGTVQEEDCD--GLCWQYIIEED---GIKPEFVVITEPTDMNIYRGQRGRMEIKVTVKGVSCHG 195 (395)
T ss_pred HHHHHcCCCCCceEEEEecccccccC--chHHHHHHHhc---CCCCCEEEEcCCCccceEEecceEEEEEEEEeeecccc
Confidence 45677776778899999999999754 13456666542 34678999999998888999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCceEeeEEEecCCCccceeCCeEEEEEEeecCCCCCHHH
Q 028821 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTD 161 (203)
Q Consensus 82 s~p~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~~~~~~~~~ 161 (203)
|.|+.|.||+..+++++..+++.... ... ..+.++.+++++.|+.|+...|+||++|++++|+|++|+++.++
T Consensus 196 s~p~~g~nAi~~~~~~l~~l~~~~~~-~~~------~~~~~~~t~~v~~i~~g~~~~NviP~~~~~~~diR~~p~~~~~~ 268 (395)
T TIGR03320 196 SAPERGDNAIYKMAPILKELSQLNAN-LVE------DPFLGKGTLTVSEIFFSSPSRCAVADGCTISIDRRLTWGETWEY 268 (395)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHh-hcC------CcccCcCceeeeeeecCCCCcCccCCEEEEEEEEecCCCCCHHH
Confidence 99999999999999999999875321 110 01122467899999833347899999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 028821 162 VMKRLQEYVDDI 173 (203)
Q Consensus 162 ~~~~i~~~~~~~ 173 (203)
+.++|++.+...
T Consensus 269 i~~~i~~~~~~~ 280 (395)
T TIGR03320 269 ALEQIRNLPAVQ 280 (395)
T ss_pred HHHHHHHHHhhc
Confidence 999999987653
No 18
>PRK13004 peptidase; Reviewed
Probab=99.92 E-value=4e-24 Score=178.71 Aligned_cols=158 Identities=16% Similarity=0.177 Sum_probs=130.2
Q ss_pred ccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCCCCCceeeeeeeEEEEEEEeecCCCc
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~~~G~~~Hs 81 (203)
++|++.+..++++|.|+|++|||.++ +.|++.+++.. .+++|++++.||+...++++++|..+++|+++|+++|+
T Consensus 123 ~~l~~~~~~~~~~i~~~~~~~EE~~~--g~~~~~~~~~~---~~~~d~~i~~e~~~~~i~~~~~G~~~~~v~v~G~~~Ha 197 (399)
T PRK13004 123 KIIKDLGLDDEYTLYVTGTVQEEDCD--GLCWRYIIEED---KIKPDFVVITEPTDLNIYRGQRGRMEIRVETKGVSCHG 197 (399)
T ss_pred HHHHhcCCCCCCeEEEEEEcccccCc--chhHHHHHHhc---CCCCCEEEEccCCCCceEEecceEEEEEEEEecccccc
Confidence 56777777789999999999999743 25788888753 24678999999998889999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCceEeeEEEecCCCccceeCCeEEEEEEeecCCCCCHHH
Q 028821 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTD 161 (203)
Q Consensus 82 s~p~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~~~~~~~~~ 161 (203)
+.|+.|.||+..+++++..+..+... ... ..+.++.+++++.|..|+.+.|+||+.|++.+|+|++|.++.++
T Consensus 198 ~~p~~g~nAi~~~~~~i~~l~~~~~~-~~~------~~~~~~~~~~v~~i~~g~~~~nvvP~~~~~~~diR~~~~~~~~~ 270 (399)
T PRK13004 198 SAPERGDNAIYKMAPILNELEELNPN-LKE------DPFLGKGTLTVSDIFSTSPSRCAVPDSCAISIDRRLTVGETWES 270 (399)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhhccc-ccc------CCcCCCceEEEeeeecCCCCCCccCCEEEEEEEEcCCCCCCHHH
Confidence 99999999999999999999865321 000 11223457788988844468999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 028821 162 VMKRLQEYVD 171 (203)
Q Consensus 162 ~~~~i~~~~~ 171 (203)
+.++|++...
T Consensus 271 v~~~i~~~~~ 280 (399)
T PRK13004 271 VLAEIRALPA 280 (399)
T ss_pred HHHHHHHHHh
Confidence 9999998843
No 19
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.92 E-value=6.7e-24 Score=174.51 Aligned_cols=179 Identities=19% Similarity=0.218 Sum_probs=137.6
Q ss_pred CCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCCCCCceeeeeeeEEEEEEEeecCCCcCCCCCCCC
Q 028821 10 KLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLPHKAIN 89 (203)
Q Consensus 10 ~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~~~G~~~Hss~p~~g~N 89 (203)
+++++|.|+|++|||+++. ..|++.+++.. ...+++|++|++||+...++++++|..+++|+++|+++|+|.|+.|.|
T Consensus 112 ~~~~~i~~~~~~~EE~~~~-~~G~~~~~~~~-~~~~~~d~~i~~ep~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g~n 189 (352)
T PRK13007 112 EPAHDLTLVFYDCEEVEAE-ANGLGRLAREH-PEWLAGDFAILLEPTDGVIEAGCQGTLRVTVTFHGRRAHSARSWLGEN 189 (352)
T ss_pred ccCCCeEEEEEecccccCC-cccHHHHHHhc-ccccCCCEEEEecCCCCceEeeccceEEEEEEEEecccccCCCccCcC
Confidence 4688999999999998651 13888888653 123467899999999888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCceEeeEEEecCCCccceeCCeEEEEEEeecCCCCCHHHHHHHHHHH
Q 028821 90 PLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEY 169 (203)
Q Consensus 90 Ai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~~~~~~~~~~~~~i~~~ 169 (203)
|+..+++++..++.+........ +.....+++++.++ ||...|+||++|++++|+|++|+++.+++.++|++.
T Consensus 190 Ai~~~~~~i~~l~~~~~~~~~~~------~~~~~~~~~~~~i~-gG~~~nviP~~a~~~~diR~~p~~~~~~v~~~i~~~ 262 (352)
T PRK13007 190 AIHKAAPVLARLAAYEPREVVVD------GLTYREGLNAVRIS-GGVAGNVIPDECVVNVNYRFAPDRSLEEALAHVREV 262 (352)
T ss_pred HHHHHHHHHHHHHHhcccccccC------CCCccceeEeEeEe-cCCcCccCCCeEEEEEEEeeCCCCCHHHHHHHHHHH
Confidence 99999999999976532111100 11112578999998 999999999999999999999999999999999999
Q ss_pred HHHhhhcchhccccCCCCCCCCCCCCccccc
Q 028821 170 VDDINENIEKLDTRGPVSKYVLPDENIRGRQ 200 (203)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (203)
+++.+ +++.... ..+....++.++...+
T Consensus 263 ~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~ 290 (352)
T PRK13007 263 FDGFA-EVEVTDL--APGARPGLDHPAAAAL 290 (352)
T ss_pred hcccc-EEEeecc--cCCCCCCCCCHHHHHH
Confidence 88765 4442211 1222334566554433
No 20
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=99.92 E-value=7.3e-24 Score=176.89 Aligned_cols=160 Identities=16% Similarity=0.155 Sum_probs=129.3
Q ss_pred ccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCCCCCceeeeeeeEEEEEEEeecCCCc
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~~~G~~~Hs 81 (203)
+.|++.+..+++++.|++++|||.++ +.|++.+++++. +++|++|+.||+...+.++++|..+++|+++|+++|+
T Consensus 121 ~~l~~~~~~~~~~v~~~~~~dEE~~~--g~~~~~~~~~~~---~~~d~~i~~ep~~~~i~~g~~G~~~~~v~v~G~~~Hs 195 (395)
T TIGR03526 121 KIIKDLGLLDDYTLLVTGTVQEEDCD--GLCWQYIIEEDK---IKPEFVVITEPTDMNIYRGQRGRMEIKVTVKGVSCHG 195 (395)
T ss_pred HHHHHcCCCCCceEEEEEecccccCC--cHhHHHHHhccC---CCCCEEEecCCCCceEEEEcceEEEEEEEEecCCCcc
Confidence 45667776677899999999999532 147777776533 4678999999998888899999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCceEeeEEEecCCCccceeCCeEEEEEEeecCCCCCHHH
Q 028821 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTD 161 (203)
Q Consensus 82 s~p~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~~~~~~~~~ 161 (203)
+.|+.|.||+..+++++..+..+... +.. ..+.+..+++++.|..|+...|+||++|++++|+|++|+++.++
T Consensus 196 ~~p~~g~nAi~~~~~~i~~l~~~~~~-~~~------~~~~~~~~~~v~~i~~g~~~~nviP~~~~~~~d~R~~~~~~~~~ 268 (395)
T TIGR03526 196 SAPERGDNAIYKMAPILKELSQLNAN-LVE------DPFLGKGTLTVSEIFFSSPSRCAVADGCTISIDRRLTWGETWEY 268 (395)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhhhh-hcC------CcccCccceeeeeeecCCCCCCccCCeEEEEEEEecCCCCCHHH
Confidence 99999999999999999999765321 110 01112367899999833347899999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 028821 162 VMKRLQEYVDDI 173 (203)
Q Consensus 162 ~~~~i~~~~~~~ 173 (203)
+.+.|++.++..
T Consensus 269 ~~~~i~~~~~~~ 280 (395)
T TIGR03526 269 ALEQIRNLPAVQ 280 (395)
T ss_pred HHHHHHHHHHhc
Confidence 999999987654
No 21
>PLN02693 IAA-amino acid hydrolase
Probab=99.92 E-value=1.3e-23 Score=176.93 Aligned_cols=155 Identities=21% Similarity=0.348 Sum_probs=122.0
Q ss_pred ccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCCCC----Ccee----eeeeeEEEEEE
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK----QPCI----GTGGMIPWKLH 73 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~----~i~~----~~~g~~~~~i~ 73 (203)
++|++.+..++++|.|+|++|||. + .|++.+++.+.+++ .|+++..+.... .+.. .++|..+++|+
T Consensus 149 ~~L~~~~~~~~g~V~~if~pdEE~-~---~Ga~~~i~~g~~~~--~~~iig~h~~p~~~~g~~~~~~g~~~~G~~~~~i~ 222 (437)
T PLN02693 149 KILQEHRHHLQGTVVLIFQPAEEG-L---SGAKKMREEGALKN--VEAIFGIHLSPRTPFGKAASRAGSFMAGAGVFEAV 222 (437)
T ss_pred HHHHhCcccCCceEEEEEEEcccc-h---hhHHHHHHCCCCCC--CCEEEEEecCCCCCCeeEEeccCcccccceEEEEE
Confidence 567777667789999999999995 3 49999999887653 245554443321 1221 25788999999
Q ss_pred EeecCCCcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCceEeeEEEecCCCccceeCCeEEEEEEeec
Q 028821 74 VTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRL 153 (203)
Q Consensus 74 ~~G~~~Hss~p~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~ 153 (203)
++|+++|+|.|+.|+|||..+++++..|++...+..++. .+.+++++.|+ ||...|+||++|++.+|+|+
T Consensus 223 v~Gk~aHaa~P~~G~nAI~~aa~~i~~l~~~~~~~~~~~---------~~~ti~vg~i~-GG~~~NvVPd~a~~~~diR~ 292 (437)
T PLN02693 223 ITGKGGHAAIPQHTIDPVVAASSIVLSLQQLVSRETDPL---------DSKVVTVSKVN-GGNAFNVIPDSITIGGTLRA 292 (437)
T ss_pred EEcccccCCCCCCCcCHHHHHHHHHHHHHHHhcccCCCC---------CCcEEEEEEEE-cCCCCceECCeEEEEEEEec
Confidence 999999999999999999999999999987643222211 24788999998 99999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhh
Q 028821 154 TPFYNVTDVMKRLQEYVDDIN 174 (203)
Q Consensus 154 ~~~~~~~~~~~~i~~~~~~~~ 174 (203)
.+. .+.+.++|+++++.++
T Consensus 293 ~~~--~~~i~~~i~~i~~~~a 311 (437)
T PLN02693 293 FTG--FTQLQQRIKEIITKQA 311 (437)
T ss_pred CCH--HHHHHHHHHHHHHHHH
Confidence 986 4688999999888754
No 22
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=99.92 E-value=7.9e-24 Score=173.81 Aligned_cols=161 Identities=15% Similarity=0.181 Sum_probs=129.6
Q ss_pred eeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCCC-CCceeeeeeeEEEEEEEeecCCCcCCCCCCCCHH
Q 028821 13 STVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD-KQPCIGTGGMIPWKLHVTGKLFHSGLPHKAINPL 91 (203)
Q Consensus 13 ~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~-~~i~~~~~g~~~~~i~~~G~~~Hss~p~~g~NAi 91 (203)
.+|.|+|++|||+|+ .|++++++++ .++|++++.||+. ..+.++++|..+++|+++|+++|+|.|+ .||+
T Consensus 112 ~~i~~~~~~dEE~g~---~G~~~l~~~~----~~~d~~i~~ep~~~~~i~~~~kG~~~~~i~v~G~~~Has~p~--~nAi 182 (346)
T PRK00466 112 IKVMVSGLADEESTS---IGAKELVSKG----FNFKHIIVGEPSNGTDIVVEYRGSIQLDIMCEGTPEHSSSAK--SNLI 182 (346)
T ss_pred CCEEEEEEcCcccCC---ccHHHHHhcC----CCCCEEEEcCCCCCCceEEEeeEEEEEEEEEEeeccccCCCC--cCHH
Confidence 469999999999987 6999999865 3578999999987 4688999999999999999999999986 5999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCccccCCCCCceEeeEEEecCCCccceeCCeEEEEEEeecCCCCCHHHHHHHHHHHHH
Q 028821 92 ELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 171 (203)
Q Consensus 92 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~~~~~~~~~~~~~i~~~~~ 171 (203)
..|++++..+.+... .+ ...+++++.++ ||...|+||++|++++|+|++|+.+.+++.++|++.+.
T Consensus 183 ~~~~~~l~~l~~~~~-~~------------~~~t~~~~~i~-gG~~~NvvP~~a~~~~diR~~p~~~~~~v~~~i~~~~~ 248 (346)
T PRK00466 183 VDISKKIIEVYKQPE-NY------------DKPSIVPTIIR-AGESYNVTPAKLYLHFDVRYAINNKRDDLISEIKDKFQ 248 (346)
T ss_pred HHHHHHHHHHHhccc-cC------------CCCcceeeEEe-cCCcCcccCCceEEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 999999998865321 11 12578999998 89999999999999999999999999999999999887
Q ss_pred HhhhcchhccccCCCCCCCCCCCCccccc
Q 028821 172 DINENIEKLDTRGPVSKYVLPDENIRGRQ 200 (203)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (203)
++ +++.. ....+.++.+++++.+.+
T Consensus 249 ~~--~~~~~--~~~~~~~~~~~~~lv~~l 273 (346)
T PRK00466 249 EC--GLKIV--DETPPVKVSINNPVVKAL 273 (346)
T ss_pred hC--cEeec--cCCCCcccCCCCHHHHHH
Confidence 62 23311 223344555667776554
No 23
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=99.92 E-value=7.5e-24 Score=176.89 Aligned_cols=192 Identities=24% Similarity=0.313 Sum_probs=141.5
Q ss_pred ccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhc--cccCCCCCCCEEEee---CCCCCceeeeeeeEEEEEEEee
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKD--GLLNKLKGGPLYWID---TADKQPCIGTGGMIPWKLHVTG 76 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~--~~~~~~~~d~~i~~e---~~~~~i~~~~~g~~~~~i~~~G 76 (203)
++|++.+..++++|.|+|++|||.|+. .|++++++. +.+.+ .|++++.+ |+...+.++++|..+++|+++|
T Consensus 130 ~~l~~~~~~~~~~v~~~~~~dEE~g~~--~g~~~~~~~~~~~~~~--~d~~i~~~~~~~~~~~i~~~~~G~~~~~v~v~G 205 (400)
T PRK13983 130 KALMDLGIRPKYNLGLAFVSDEETGSK--YGIQYLLKKHPELFKK--DDLILVPDAGNPDGSFIEIAEKSILWLKFTVKG 205 (400)
T ss_pred HHHHHhCCCCCCcEEEEEEeccccCCc--ccHHHHHhhcccccCC--CCEEEEecCCCCCCceeEEeecceEEEEEEEEe
Confidence 567777778999999999999998873 489999976 33322 46777754 4444567899999999999999
Q ss_pred cCCCcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCC-CceEeeEEEecCCCccceeCCeEEEEEEeecCC
Q 028821 77 KLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET-PSTMKPTQWSYPGGGINQIPGECTVSGDVRLTP 155 (203)
Q Consensus 77 ~~~Hss~p~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~~~ 155 (203)
+++|+|.|+.|+||+..+++++..++..+.+.+.... ..+.+ ..+++++.+..|+...|+||++|++.+|+|++|
T Consensus 206 ~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~nvvp~~~~~~~diR~~p 281 (400)
T PRK13983 206 KQCHASTPENGINAHRAAADFALELDEALHEKFNAKD----PLFDPPYSTFEPTKKEANVDNINTIPGRDVFYFDCRVLP 281 (400)
T ss_pred EccccCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccc----cccCCCCcccccceeecCCcCCcccCCeeEEEEEEEeCC
Confidence 9999999999999999999999999863222222110 01111 145677777733368899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhc----chhcccc-CCCCCCCCCCCCcccccc
Q 028821 156 FYNVTDVMKRLQEYVDDINEN----IEKLDTR-GPVSKYVLPDENIRGRQL 201 (203)
Q Consensus 156 ~~~~~~~~~~i~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~ 201 (203)
+++.+++.++|++.+++.... ++..... ...+..+.+++++.+.++
T Consensus 282 ~~~~~~v~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~l~ 332 (400)
T PRK13983 282 DYDLDEVLKDIKEIADEFEEEYGVKIEVEIVQREQAPPPTPPDSEIVKKLK 332 (400)
T ss_pred CCCHHHHHHHHHHHHHHhccccCcceeEEEeeccCCccCCCCCcHHHHHHH
Confidence 999999999999999986543 3311111 223455677888777654
No 24
>PRK06837 acetylornithine deacetylase; Provisional
Probab=99.92 E-value=1.6e-23 Score=176.52 Aligned_cols=190 Identities=12% Similarity=0.137 Sum_probs=145.6
Q ss_pred ccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCCCCCceeeeeeeEEEEEEEeecCCCc
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~~~G~~~Hs 81 (203)
++|++.+..++++|.|+|++|||.++ .|+..++..+ +.+|++|+.||+...++++++|..+++|+++|+++|+
T Consensus 151 ~~l~~~~~~~~~~i~~~~~~dEE~~g---~g~~~~~~~~----~~~d~~iv~ep~~~~i~~~~~G~~~~~i~v~G~~~Hs 223 (427)
T PRK06837 151 DALRAAGLAPAARVHFQSVIEEESTG---NGALSTLQRG----YRADACLIPEPTGEKLVRAQVGVIWFRLRVRGAPVHV 223 (427)
T ss_pred HHHHHcCCCCCCcEEEEEEeccccCC---HhHHHHHhcC----cCCCEEEEcCCCCCccccccceeEEEEEEEEeecccc
Confidence 45677777788999999999999876 5888877654 3578999999998888899999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCC--CccccCCCCCceEeeEEEecCCCccceeCCeEEEEEEeecCCCCCH
Q 028821 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHP--KEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNV 159 (203)
Q Consensus 82 s~p~~g~NAi~~~~~~l~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~~~~~~~ 159 (203)
+.|+.|.||+..+++++..|..+.... .... ......+..+.+++++.|+ ||...|+||+.|++.+++|+.|+++.
T Consensus 224 ~~p~~g~nAi~~~~~~i~~l~~~~~~~-~~~~~~~~~~~~~~~~~t~ni~~i~-gG~~~nvVP~~~~~~~~ir~~p~~~~ 301 (427)
T PRK06837 224 REAGTGANAIDAAYHLIQALRELEAEW-NARKASDPHFEDVPHPINFNVGIIK-GGDWASSVPAWCDLDCRIAIYPGVTA 301 (427)
T ss_pred CCcccCcCHHHHHHHHHHHHHHHHHHH-hhcccCCCcccCCCCceeEeeeeEe-CCCCCCccCCEEEEEEEEeECCCCCH
Confidence 999999999999999999997653211 1100 0001112234688999999 88999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcch-------hc--cccCCCCCCCCCCCCccccc
Q 028821 160 TDVMKRLQEYVDDINENIE-------KL--DTRGPVSKYVLPDENIRGRQ 200 (203)
Q Consensus 160 ~~~~~~i~~~~~~~~~~~~-------~~--~~~~~~~~~~~~~~~~~~~~ 200 (203)
+++.++|++.+++...+.. .+ ......+-.+.+++++.+.+
T Consensus 302 ~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 351 (427)
T PRK06837 302 ADAQAEIEACLAAAARDDRFLSNNPPEVVWSGFLAEGYVLEPGSEAEAAL 351 (427)
T ss_pred HHHHHHHHHHHHHHHhcChhhhhCCCeEEEEecccCCcCCCCCCHHHHHH
Confidence 9999999999988654321 11 11122344556777766544
No 25
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=99.91 E-value=7.6e-24 Score=177.73 Aligned_cols=162 Identities=19% Similarity=0.214 Sum_probs=126.5
Q ss_pred ccccccccCCceeEEEEEEecCCCCCC--CCccHHHHHhccc--------------------cCCCCCCCEEEe--eCCC
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAI--TGVGVDALVKDGL--------------------LNKLKGGPLYWI--DTAD 57 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~--~~~G~~~~~~~~~--------------------~~~~~~d~~i~~--e~~~ 57 (203)
++|++.+..++++|.|+|++|||.|+- ...|++.+++... ..++++|+++++ ||+.
T Consensus 105 ~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ept~ 184 (413)
T PRK09290 105 RTLNERGIRPRRPIEVVAFTNEEGSRFGPAMLGSRVFTGALTPEDALALRDADGVSFAEALAAIGYDGDEAVGAARARRD 184 (413)
T ss_pred HHHHHcCCCCCCCeEEEEEcCCccccccCccccHHHHHcccCHHHHHhccCCCCCCHHHHHHHcCCChhhccccccCCCC
Confidence 467777777899999999999998410 0158888764311 124567777654 4542
Q ss_pred ---------------------CCceeeeeeeEEEEEEEeecCCCcC-CC-CCCCCHHHHHHHHHHHHHHHHhcCCCCCCC
Q 028821 58 ---------------------KQPCIGTGGMIPWKLHVTGKLFHSG-LP-HKAINPLELAMEALKVIQTRFYKDFPPHPK 114 (203)
Q Consensus 58 ---------------------~~i~~~~~g~~~~~i~~~G~~~Hss-~p-~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~ 114 (203)
..++++++|..+++|+++|+++|++ .| +.|.|||..+++++..|+.+..+. .+
T Consensus 185 ~~~~~~~~~~~~~~~e~~~~~~~i~~~~kG~~~~~i~v~Gk~aHas~~P~~~g~NAI~~~~~~i~~l~~l~~~~-~~--- 260 (413)
T PRK09290 185 IKAFVELHIEQGPVLEAEGLPIGVVTGIVGQRRYRVTFTGEANHAGTTPMALRRDALLAAAEIILAVERIAAAH-GP--- 260 (413)
T ss_pred ccEEEEEEeccCHHHHHCCCcEEEEeeeeccEEEEEEEEEECCCCCCCCchhccCHHHHHHHHHHHHHHHHHhc-CC---
Confidence 2367899999999999999999988 68 589999999999999998754221 11
Q ss_pred ccccCCCCCceEeeEEEecCCCccceeCCeEEEEEEeecCCCCCHHHHHHHHHHHHHHhhh
Q 028821 115 EQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINE 175 (203)
Q Consensus 115 ~~~~~~~~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~~~~~~~~~~~~~i~~~~~~~~~ 175 (203)
+.+++++.++.++...|+||++|++.+|+|++|+++.+++.++|++.++....
T Consensus 261 --------~~~~~~g~i~~g~~~~NvIP~~a~~~~diR~~p~e~~e~v~~~i~~~~~~~~~ 313 (413)
T PRK09290 261 --------DLVATVGRLEVKPNSVNVIPGEVTFTLDIRHPDDAVLDALVAELRAAAEAIAA 313 (413)
T ss_pred --------CeEEEEEEEEEcCCCCeEECCEEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHH
Confidence 25678999984457899999999999999999999999999999999988654
No 26
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=99.91 E-value=1.4e-23 Score=175.98 Aligned_cols=151 Identities=23% Similarity=0.244 Sum_probs=129.9
Q ss_pred ccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCCC--CCceeeeeeeEEEEEEEeecCC
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD--KQPCIGTGGMIPWKLHVTGKLF 79 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~--~~i~~~~~g~~~~~i~~~G~~~ 79 (203)
++|++.+.+++++|.|+|++|||.|+ .|++.++++.. .++|++|+.||+. +.+.++++|..+++|+++|+++
T Consensus 149 ~~l~~~~~~~~~~i~~~~~~dEE~g~---~G~~~~~~~~~---~~~d~~i~~ep~~~~~~v~~~~~G~~~~~v~v~G~~~ 222 (410)
T PRK06133 149 KILQQLGFKDYGTLTVLFNPDEETGS---PGSRELIAELA---AQHDVVFSCEPGRAKDALTLATSGIATALLEVKGKAS 222 (410)
T ss_pred HHHHHcCCCCCCCEEEEEECCcccCC---ccHHHHHHHHh---ccCCEEEEeCCCCCCCCEEEeccceEEEEEEEEeecc
Confidence 45667776778999999999999987 69999997632 2468999999986 4688899999999999999999
Q ss_pred CcC-CCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCceEeeEEEecCCCccceeCCeEEEEEEeecCCCCC
Q 028821 80 HSG-LPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYN 158 (203)
Q Consensus 80 Hss-~p~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~~~~~~ 158 (203)
|++ .|+.|.||+..+++++..+.++.. +. ...+++++.++ ||...|+||++|++.+|+|++|.++
T Consensus 223 Hsg~~p~~g~nAi~~~~~~i~~l~~~~~----~~---------~~~t~~~~~i~-gG~~~nvIP~~~~~~~diR~~~~~~ 288 (410)
T PRK06133 223 HAGAAPELGRNALYELAHQLLQLRDLGD----PA---------KGTTLNWTVAK-AGTNRNVIPASASAQADVRYLDPAE 288 (410)
T ss_pred ccCCCcccCcCHHHHHHHHHHHHHhccC----CC---------CCeEEEeeEEE-CCCCCceeCCccEEEEEEEECCHHH
Confidence 975 799999999999999998876421 11 13678999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 028821 159 VTDVMKRLQEYVDD 172 (203)
Q Consensus 159 ~~~~~~~i~~~~~~ 172 (203)
.+++.++|++.+++
T Consensus 289 ~~~v~~~i~~~~~~ 302 (410)
T PRK06133 289 FDRLEADLQEKVKN 302 (410)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999987
No 27
>PRK07338 hypothetical protein; Provisional
Probab=99.91 E-value=1.4e-23 Score=175.46 Aligned_cols=153 Identities=15% Similarity=0.097 Sum_probs=131.2
Q ss_pred ccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCCC--CCceeeeeeeEEEEEEEeecCC
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD--KQPCIGTGGMIPWKLHVTGKLF 79 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~--~~i~~~~~g~~~~~i~~~G~~~ 79 (203)
++|++.+..++++|.|+|++|||+|+ .|++.++++.. .++|+++++||+. +.+..+++|..+++|+++|+++
T Consensus 142 ~~l~~~~~~~~~~i~~~~~~dEE~g~---~g~~~~~~~~~---~~~~~~i~~ep~~~~~~v~~~~kG~~~~~v~v~G~~a 215 (402)
T PRK07338 142 LAFERSPLADKLGYDVLINPDEEIGS---PASAPLLAELA---RGKHAALTYEPALPDGTLAGARKGSGNFTIVVTGRAA 215 (402)
T ss_pred HHHHhcCCCCCCCEEEEEECCcccCC---hhhHHHHHHHh---ccCcEEEEecCCCCCCcEEeecceeEEEEEEEEeEcc
Confidence 46777777778899999999999987 69999987643 2457899999974 5577789999999999999999
Q ss_pred CcCC-CCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCceEeeEEEecCCCccceeCCeEEEEEEeecCCCCC
Q 028821 80 HSGL-PHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYN 158 (203)
Q Consensus 80 Hss~-p~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~~~~~~ 158 (203)
|++. |+.|.||+..+++++..|+++.. ... ..+++++.|+ ||.+.|+||++|++.+|+|+.|+++
T Consensus 216 Hs~~~p~~g~nAi~~~~~~i~~l~~l~~-~~~------------~~t~~vg~i~-gG~~~nvVP~~a~~~~d~R~~~~~~ 281 (402)
T PRK07338 216 HAGRAFDEGRNAIVAAAELALALHALNG-QRD------------GVTVNVAKID-GGGPLNVVPDNAVLRFNIRPPTPED 281 (402)
T ss_pred cCCCCcccCccHHHHHHHHHHHHHhhhc-cCC------------CcEEEEEEEe-cCCCCceeccccEEEEEeccCCHHH
Confidence 9996 89999999999999999876531 111 3678999999 8999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 028821 159 VTDVMKRLQEYVDDIN 174 (203)
Q Consensus 159 ~~~~~~~i~~~~~~~~ 174 (203)
.+++.++|++.+++.+
T Consensus 282 ~~~v~~~i~~~~~~~~ 297 (402)
T PRK07338 282 AAWAEAELKKLIAQVN 297 (402)
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999998865
No 28
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=99.91 E-value=1.5e-23 Score=175.84 Aligned_cols=160 Identities=23% Similarity=0.242 Sum_probs=126.5
Q ss_pred ccccccccCCceeEEEEEEecCCCC----CCCCccHHHHHhccc----------c-----------CCCCCCCEEEeeCC
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENS----AITGVGVDALVKDGL----------L-----------NKLKGGPLYWIDTA 56 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g----~~~~~G~~~~~~~~~----------~-----------~~~~~d~~i~~e~~ 56 (203)
++|++.+..++++|.|++++|||++ +. .|+++++.... . .++.+|++++.||+
T Consensus 106 ~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~--~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~ep~ 183 (412)
T PRK12892 106 RALNEHGIATRHPLDVVAWCDEEGSRFTPGF--LGSRAYAGRLDPADALAARCRSDGVPLRDALAAAGLAGRPRPAADRA 183 (412)
T ss_pred HHHHHcCCCCCCCeEEEEecCcccccccCcc--ccHHHHHcCCCHHHHHhCccCCCCcCHHHHHHHcCCChhhccccccc
Confidence 5677888889999999999999984 31 59999984210 0 13445666666655
Q ss_pred C---------------------CCceeeeeeeEEEEEEEeecCCCcCC-CC-CCCCHHHHHHHHHHHHHHHHhcCCCCCC
Q 028821 57 D---------------------KQPCIGTGGMIPWKLHVTGKLFHSGL-PH-KAINPLELAMEALKVIQTRFYKDFPPHP 113 (203)
Q Consensus 57 ~---------------------~~i~~~~~g~~~~~i~~~G~~~Hss~-p~-~g~NAi~~~~~~l~~l~~~~~~~~~~~~ 113 (203)
. ..++++++|..+++|+++|+++|++. |+ .|.||+..+++++..++++.....
T Consensus 184 ~~~~~~e~~~~~g~~~e~~~~~~~i~~~~kG~~~~~i~v~G~~aHa~~~p~~~g~nAi~~a~~~i~~l~~~~~~~~---- 259 (412)
T PRK12892 184 RPKGYLEAHIEQGPVLEQAGLPVGVVTGIVGIWQYRITVTGEAGHAGTTPMALRRDAGLAAAEMIAAIDEHFPRVC---- 259 (412)
T ss_pred CccEEEEEEeccCHhHhhCCCcEEEEEEeccceEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcC----
Confidence 2 13667899999999999999999875 65 689999999999999987542211
Q ss_pred CccccCCCCCceEeeEEEecCCCccceeCCeEEEEEEeecCCCCCHHHHHHHHHHHHHHhhh
Q 028821 114 KEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINE 175 (203)
Q Consensus 114 ~~~~~~~~~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~~~~~~~~~~~~~i~~~~~~~~~ 175 (203)
.+.+++++.|+.|+.+.|+||++|++++|+|++|+++.+++.++|++.++.+..
T Consensus 260 --------~~~~~~vg~i~gg~~~~NvIP~~a~~~~diR~~p~~~~~~v~~~i~~~~~~~~~ 313 (412)
T PRK12892 260 --------GPAVVTVGRVALDPGSPSIIPGRVEFSFDARHPSPPVLQRLVALLEALCREIAR 313 (412)
T ss_pred --------CCcEEEEEEEEecCCCCeEECCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHH
Confidence 136789999983347999999999999999999999999999999999988643
No 29
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=99.90 E-value=2.3e-23 Score=174.14 Aligned_cols=166 Identities=19% Similarity=0.213 Sum_probs=127.3
Q ss_pred ccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEee-----CCC-CCceeeeeeeEEEEEEEe
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWID-----TAD-KQPCIGTGGMIPWKLHVT 75 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e-----~~~-~~i~~~~~g~~~~~i~~~ 75 (203)
++|++.+..++++|.|+|++|||.|+. .|++++++++.+.+. |..++.+ |+. ..++++++|..+++|+++
T Consensus 125 ~~l~~~~~~~~~~v~l~~~~dEE~g~~--~G~~~~~~~~~~~~~--~~~~~~d~g~~~~~~~~~i~~~~kG~~~~~l~v~ 200 (400)
T TIGR01880 125 RNLKASGFKFKRTIHISFVPDEEIGGH--DGMEKFAKTDEFKAL--NLGFALDEGLASPDDVYRVFYAERVPWWVVVTAP 200 (400)
T ss_pred HHHHHcCCCCCceEEEEEeCCcccCcH--hHHHHHHHhhhccCC--ceEEEEcCCCcccccccceeEEeeEEEEEEEEEe
Confidence 466777778899999999999999762 499999987654443 4455443 333 357789999999999999
Q ss_pred ecCCCcCCCCCCCCHHHHHHHHHHHHHHHHhc---CCCCCCCccccCCCCCceEeeEEEecCCCccceeCCeEEEEEEee
Q 028821 76 GKLFHSGLPHKAINPLELAMEALKVIQTRFYK---DFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVR 152 (203)
Q Consensus 76 G~~~Hss~p~~g~NAi~~~~~~l~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR 152 (203)
|+++|++.|. +.||+..|++++..|..+... .+... ....+...++++++.|+ ||...|+||++|++.+|+|
T Consensus 201 G~~~Hs~~~~-~~nai~~l~~~i~~l~~~~~~~~~~~~~~---~~~~~~~~~t~~v~~i~-gG~~~nvIP~~a~~~~diR 275 (400)
T TIGR01880 201 GNPGHGSKLM-ENTAMEKLEKSVESIRRFRESQFQLLQSN---PDLAIGDVTSVNLTKLK-GGVQSNVIPSEAEAGFDIR 275 (400)
T ss_pred cCCCCCCCCC-CCCHHHHHHHHHHHHHHhhHHHHHHHhcC---ccccccccceeecceec-cCCcCCcCCCccEEEEEEe
Confidence 9999999864 469999999999887654211 01110 00111123688999998 8999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHhhhc
Q 028821 153 LTPFYNVTDVMKRLQEYVDDINEN 176 (203)
Q Consensus 153 ~~~~~~~~~~~~~i~~~~~~~~~~ 176 (203)
++|.++.+++.++|++.+++....
T Consensus 276 ~~p~~~~~~~~~~i~~~i~~~~~~ 299 (400)
T TIGR01880 276 LAPSVDFEEMENRLDEWCADAGEG 299 (400)
T ss_pred eCCCCCHHHHHHHHHHHHhccCCc
Confidence 999999999999999999875433
No 30
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=99.90 E-value=3.6e-23 Score=173.60 Aligned_cols=159 Identities=16% Similarity=0.210 Sum_probs=122.6
Q ss_pred ccccccccCCceeEEEEEEecCCCC-----CCCCccHHHHHhccccC--------------------CCCCC--------
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENS-----AITGVGVDALVKDGLLN--------------------KLKGG-------- 48 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g-----~~~~~G~~~~~~~~~~~--------------------~~~~d-------- 48 (203)
++|++.+..++++|.|+|++|||+| + .|++++......+ ++.++
T Consensus 108 ~~l~~~~~~~~~~v~~~~~~dEE~g~~~~~~---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (412)
T PRK12893 108 RTLNDAGIRTRRPIEVVSWTNEEGARFAPAM---LGSGVFTGALPLDDALARRDADGITLGEALARIGYRGTARVGRRAV 184 (412)
T ss_pred HHHHHcCCCCCCCeEEEEEcccccccccccc---ccHHHHhCcCChHHHHhccCCCCCCHHHHHHHcCCCcccccccCCc
Confidence 5678888788999999999999986 4 5888887442100 11222
Q ss_pred -CEEEeeC----------CCCCceeeeeeeEEEEEEEeecCCCcCC-CC-CCCCHHHHHHHHHHHHHHHHhcCCCCCCCc
Q 028821 49 -PLYWIDT----------ADKQPCIGTGGMIPWKLHVTGKLFHSGL-PH-KAINPLELAMEALKVIQTRFYKDFPPHPKE 115 (203)
Q Consensus 49 -~~i~~e~----------~~~~i~~~~~g~~~~~i~~~G~~~Hss~-p~-~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~ 115 (203)
..+.++. ....++++++|..+++|+++|+++|+|. |+ .|.|||..+++++..|+.+..+ ..+
T Consensus 185 ~~~~~~~~~~g~~~~~~~~~~~i~~~~kG~~~~~i~v~G~~aHas~~p~~~G~NAI~~a~~~i~~l~~~~~~-~~~---- 259 (412)
T PRK12893 185 DAYLELHIEQGPVLEAEGLPIGVVTGIQGIRWLEVTVEGQAAHAGTTPMAMRRDALVAAARIILAVERIAAA-LAP---- 259 (412)
T ss_pred cEEEEEEeccCHHHHHCCCcEEEEeeecccEEEEEEEEEECCCcCCCcchhccCHHHHHHHHHHHHHHHHHh-cCC----
Confidence 1222221 1234677999999999999999999885 84 7999999999999999876432 121
Q ss_pred cccCCCCCceEeeEEEecCCCccceeCCeEEEEEEeecCCCCCHHHHHHHHHHHHHHhhh
Q 028821 116 QVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINE 175 (203)
Q Consensus 116 ~~~~~~~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~~~~~~~~~~~~~i~~~~~~~~~ 175 (203)
..+++++.++.++...|+||++|++++|+|++|+++.+++.++|++.+++...
T Consensus 260 -------~~~~~vg~i~ggg~~~NvVP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~ 312 (412)
T PRK12893 260 -------DGVATVGRLRVEPNSRNVIPGKVVFTVDIRHPDDARLDAMEAALRAACAKIAA 312 (412)
T ss_pred -------CceEEEEEEEeeCCCceEECCeeEEEEEeeCCCHHHHHHHHHHHHHHHHHHHH
Confidence 25789999983357999999999999999999999999999999999988654
No 31
>PRK09133 hypothetical protein; Provisional
Probab=99.89 E-value=4.8e-23 Score=175.60 Aligned_cols=164 Identities=20% Similarity=0.191 Sum_probs=126.2
Q ss_pred ccccccccCCceeEEEEEEecCC-CCCCCCccHHHHHhccccCCCCCCCEEEeeCCC------C-----CceeeeeeeEE
Q 028821 2 RKLGETKLKLKSTVIAVFIASEE-NSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD------K-----QPCIGTGGMIP 69 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE-~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~------~-----~i~~~~~g~~~ 69 (203)
++|++.+..++++|.|+|++||| .|+ .|++++++... ..+++|++|+ |++. + .++++++|..+
T Consensus 154 ~~l~~~~~~~~~~i~~~~~~dEE~~g~---~G~~~l~~~~~-~~~~~~~~i~-e~~~~~~~~~gept~~~i~~g~kG~~~ 228 (472)
T PRK09133 154 IRLKREGFKPKRDIILALTGDEEGTPM---NGVAWLAENHR-DLIDAEFALN-EGGGGTLDEDGKPVLLTVQAGEKTYAD 228 (472)
T ss_pred HHHHhcCCCCCCCEEEEEECccccCcc---chHHHHHHHHh-hccCeEEEEE-CCCccccCCCCCceEEEeeeecceeEE
Confidence 56777777889999999999999 666 69999997632 2345678888 7654 2 24578999999
Q ss_pred EEEEEeecCCCcCCCCCCCCHHHHHHHHHHHHHHHHhcC-CC----------------------------CCCC------
Q 028821 70 WKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKD-FP----------------------------PHPK------ 114 (203)
Q Consensus 70 ~~i~~~G~~~Hss~p~~g~NAi~~~~~~l~~l~~~~~~~-~~----------------------------~~~~------ 114 (203)
++|+++|+++|+|.|+ +.||+..+++++..|....... .. +...
T Consensus 229 ~~i~v~G~~~Hss~p~-~~nAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (472)
T PRK09133 229 FRLEVTNPGGHSSRPT-KDNAIYRLAAALSRLAAYRFPVMLNDVTRAYFKQSAAIETGPLAAAMRAFAANPADEAAIALL 307 (472)
T ss_pred EEEEEecCCCCCCCCC-CCChHHHHHHHHHHHhhCCCCCccCCccHHHHHHHHHhCCchHHHHHHHHhcCcchHHHHHHH
Confidence 9999999999999997 5899999999999987531100 00 0000
Q ss_pred ccccCC--CCCceEeeEEEecCCCccceeCCeEEEEEEeecCCCCCHHHHHHHHHHHHHH
Q 028821 115 EQVYGF--ETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDD 172 (203)
Q Consensus 115 ~~~~~~--~~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~~~~~~~~~~~~~i~~~~~~ 172 (203)
.....+ ....+++++.|+ ||...|+||++|++.+|+|++|+++.+++.++|++.++.
T Consensus 308 ~~~~~~~~~~~~t~~~~~i~-gG~~~NvVP~~a~~~lDiR~~p~~~~e~v~~~I~~~i~~ 366 (472)
T PRK09133 308 SADPSYNAMLRTTCVATMLE-GGHAENALPQRATANVNCRIFPGDTIEAVRATLKQVVAD 366 (472)
T ss_pred hcCcchhheeeeeEEeeEEe-cCCcCccCCCceEEEEEEEeCCchhHHHHHHHHHHHhcC
Confidence 000001 124688999998 889999999999999999999999999999999998876
No 32
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=99.89 E-value=2.5e-22 Score=165.10 Aligned_cols=171 Identities=16% Similarity=0.107 Sum_probs=128.9
Q ss_pred ccCCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCCCC-CceeeeeeeEEEEEEEeecCCCcCCCCC
Q 028821 8 KLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-QPCIGTGGMIPWKLHVTGKLFHSGLPHK 86 (203)
Q Consensus 8 ~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~-~i~~~~~g~~~~~i~~~G~~~Hss~p~~ 86 (203)
+..++++|.|+|++|||+|+ .|...++.++ +++|++|++||++. .++++++|..+++|+++|+++|||.|
T Consensus 107 ~~~~~~~i~~~~~~dEE~g~---~~~~~~l~~~----~~~d~~iv~Ept~~~~i~~~~kG~~~~~l~~~G~~~Hss~~-- 177 (348)
T PRK04443 107 EALVRARVSFVGAVEEEAPS---SGGARLVADR----ERPDAVIIGEPSGWDGITLGYKGRLLVTYVATSESFHSAGP-- 177 (348)
T ss_pred cccCCCCEEEEEEcccccCC---hhHHHHHHhc----cCCCEEEEeCCCCccceeeecccEEEEEEEEEeCCCccCCC--
Confidence 34678999999999999987 4666666543 35789999999874 68899999999999999999999987
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCceEeeEEEecCCCccceeCCeEEEEEEeecCCCCCHHHHHHHH
Q 028821 87 AINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRL 166 (203)
Q Consensus 87 g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~~~~~~~~~~~~~i 166 (203)
|.||+..+++++..+.++.. ...+ ...++.+.+++++.+. ...|++|++|++++|+|++|+++.+++.+.|
T Consensus 178 g~NAi~~~~~~l~~l~~~~~-~~~~-----~~~~~~~~~~~i~~i~---~~~n~iP~~~~~~~d~R~~p~~~~~~i~~~i 248 (348)
T PRK04443 178 EPNAAEDAIEWWLAVEAWFE-ANDG-----RERVFDQVTPKLVDFD---SSSDGLTVEAEMTVGLRLPPGLSPEEAREIL 248 (348)
T ss_pred CCCHHHHHHHHHHHHHHHHh-cCcc-----ccccccccceeeeEEe---cCCCCCCceEEEEEEEccCCCCCHHHHHHHH
Confidence 79999999999999987542 1111 1112234567888876 2469999999999999999999999999999
Q ss_pred HHHHHHhhhcchhccccCCCCCCCCCCCCccccc
Q 028821 167 QEYVDDINENIEKLDTRGPVSKYVLPDENIRGRQ 200 (203)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (203)
++.+..+ +++ +. ....+..+.+++++...+
T Consensus 249 ~~~~~~~--~~~-~~-~~~~~~~~~~~~~~~~~l 278 (348)
T PRK04443 249 DALLPTG--TVT-FT-GAVPAYMVSKRTPLARAF 278 (348)
T ss_pred HHhCCCc--EEE-Ee-cCCCceecCCCCHHHHHH
Confidence 9987442 222 11 122333445677665544
No 33
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=99.89 E-value=1e-22 Score=170.94 Aligned_cols=158 Identities=17% Similarity=0.167 Sum_probs=121.7
Q ss_pred CccccccccCCceeEEEEEEecCCCCCC--CCccHHHH------------------------HhccccCCCCCCCEEEee
Q 028821 1 MRKLGETKLKLKSTVIAVFIASEENSAI--TGVGVDAL------------------------VKDGLLNKLKGGPLYWID 54 (203)
Q Consensus 1 ~k~L~~~~~~~~~~v~l~~~~dEE~g~~--~~~G~~~~------------------------~~~~~~~~~~~d~~i~~e 54 (203)
+++|++.+..++++|.|++++|||.+.. ...|++.+ .+.| +..|++++.+
T Consensus 107 ~~~l~~~~~~~~~~i~v~~~~dEE~~~f~~~~~Gs~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~ 182 (414)
T PRK12891 107 VRALNDAGIETERPVDVVIWTNEEGSRFAPSMVGSGVFFGVYPLEYLLSRRDDTGRTLGEHLARIG----YAGAEPVGGY 182 (414)
T ss_pred HHHHHHcCCCCCCCeEEEEecccccCcCCcccccHHHHhCCCCHHHHHhccCCCCCCHHHHHHHCC----CCcccccccC
Confidence 3678888989999999999999998521 01366533 2322 2233333333
Q ss_pred CC-----------------C--CCceeeeeeeEEEEEEEeecCCCcC-CCC-CCCCHHHHHHHHHHHHHHHHhcCCCCCC
Q 028821 55 TA-----------------D--KQPCIGTGGMIPWKLHVTGKLFHSG-LPH-KAINPLELAMEALKVIQTRFYKDFPPHP 113 (203)
Q Consensus 55 ~~-----------------~--~~i~~~~~g~~~~~i~~~G~~~Hss-~p~-~g~NAi~~~~~~l~~l~~~~~~~~~~~~ 113 (203)
|. . ..++.+++|..+++|+++|+++|++ .|+ .|.|||..+++++..++.+... ..
T Consensus 183 ~~~~~~e~h~e~g~vle~~~~~~~iv~~~kG~~~~~v~v~Gk~aHa~~~P~~~g~nAI~~aa~~i~~l~~~~~~-~~--- 258 (414)
T PRK12891 183 PVHAAYELHIEQGAILERAGKTIGVVTAGQGQRWYEVTLTGVDAHAGTTPMAFRRDALVGAARMIAFLDALGRR-DA--- 258 (414)
T ss_pred CCCEEEEEEeCCCHHHHHCCCcEEEEeeccCcEEEEEEEEeECCCCCCCCcccccCHHHHHHHHHHHHHHHHHh-cC---
Confidence 32 1 2366789999999999999999988 576 5899999999999999876431 11
Q ss_pred CccccCCCCCceEeeEEEecCC-CccceeCCeEEEEEEeecCCCCCHHHHHHHHHHHHHHhhh
Q 028821 114 KEQVYGFETPSTMKPTQWSYPG-GGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINE 175 (203)
Q Consensus 114 ~~~~~~~~~~~~~~~~~i~~gg-~~~nvip~~~~~~~~iR~~~~~~~~~~~~~i~~~~~~~~~ 175 (203)
.+.+++++.|+ || ...|+||++|++.+|+|++|.++.+++.++|++.++.+..
T Consensus 259 --------~~~t~~vg~I~-gG~~~~NvVP~~~~~~~diR~~~~e~~e~v~~~i~~~~~~~~~ 312 (414)
T PRK12891 259 --------PDARATVGMID-ARPNSRNTVPGECFFTVEFRHPDDAVLDRLDAALRAELARIAD 312 (414)
T ss_pred --------CCeEEEEEEEE-eeCCCcceECCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHH
Confidence 13688999999 65 6899999999999999999999999999999999987654
No 34
>PRK08262 hypothetical protein; Provisional
Probab=99.89 E-value=7.2e-23 Score=175.10 Aligned_cols=194 Identities=16% Similarity=0.111 Sum_probs=135.3
Q ss_pred ccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEE------EeeCC--C----CCceeeeeeeEE
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLY------WIDTA--D----KQPCIGTGGMIP 69 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i------~~e~~--~----~~i~~~~~g~~~ 69 (203)
++|++.+..++++|+|+|++|||+|+ .|++++++.....+.++|+++ ..++. . +.+.++++|..+
T Consensus 167 ~~l~~~~~~l~~~I~llf~~dEE~g~---~G~~~l~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~p~~~i~~~~kG~~~ 243 (486)
T PRK08262 167 EALLAQGFQPRRTIYLAFGHDEEVGG---LGARAIAELLKERGVRLAFVLDEGGAITEGVLPGVKKPVALIGVAEKGYAT 243 (486)
T ss_pred HHHHHcCCCCCCeEEEEEecccccCC---cCHHHHHHHHHHhcCCEEEEEeCCceecccccCCCCceEEeeEEeeeeeEE
Confidence 56777777789999999999999988 599998864211223344432 21211 1 235567899999
Q ss_pred EEEEEeecCCCcCCCCCCCCHHHHHHHHHHHHHHHHhc-C-----------CCCCCC-----------------------
Q 028821 70 WKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYK-D-----------FPPHPK----------------------- 114 (203)
Q Consensus 70 ~~i~~~G~~~Hss~p~~g~NAi~~~~~~l~~l~~~~~~-~-----------~~~~~~----------------------- 114 (203)
++|+++|+++|||.|+. .||+..+++++..|...... . ..+...
T Consensus 244 ~~i~v~G~~~Hss~p~~-~nai~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (486)
T PRK08262 244 LELTARATGGHSSMPPR-QTAIGRLARALTRLEDNPLPMRLRGPVAEMFDTLAPEMSFAQRVVLANLWLFEPLLLRVLAK 322 (486)
T ss_pred EEEEEecCCCCCCCCCC-CCHHHHHHHHHHHHhhCCCCCccChHHHHHHHHHHHhcCHHHHHHhhcccchhhHHHHHHhc
Confidence 99999999999999998 99999999999998752100 0 000000
Q ss_pred ccccCCCCCceEeeEEEecCCCccceeCCeEEEEEEeecCCCCCHHHHHHHHHHHHHHhhhcchhccccCCCCCCCCCCC
Q 028821 115 EQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDE 194 (203)
Q Consensus 115 ~~~~~~~~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (203)
.........++++++.|+ ||...|+||++|++.+|+|++|+++.+++.++|++.+++...+++.......++..+.+++
T Consensus 323 ~~~~~~~~~~t~~i~~I~-gG~~~NvIP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 401 (486)
T PRK08262 323 SPETAAMLRTTTAPTMLK-GSPKDNVLPQRATATVNFRILPGDSVESVLAHVRRAVADDRVEIEVLGGNSEPSPVSSTDS 401 (486)
T ss_pred CCccceeEEeeeeeeEEe-cCCccccCCCccEEEEEEEeCCCCCHHHHHHHHHHHhccCceEEEEecCCCCCCCCCCCCC
Confidence 000001124688999999 8889999999999999999999999999999999999875333432211112344555677
Q ss_pred Cccccc
Q 028821 195 NIRGRQ 200 (203)
Q Consensus 195 ~~~~~~ 200 (203)
++.+.+
T Consensus 402 ~lv~~l 407 (486)
T PRK08262 402 AAYKLL 407 (486)
T ss_pred HHHHHH
Confidence 766544
No 35
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=99.89 E-value=1.4e-22 Score=170.21 Aligned_cols=163 Identities=16% Similarity=0.099 Sum_probs=123.1
Q ss_pred ccccccccCCceeEEEEEEecCCCCCC--CCccHHHHHhccc--------------------cCCCCCCCEEE--eeCC-
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAI--TGVGVDALVKDGL--------------------LNKLKGGPLYW--IDTA- 56 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~--~~~G~~~~~~~~~--------------------~~~~~~d~~i~--~e~~- 56 (203)
+.|++.+..++++|.|+|++|||.++. ...|++.+..... ..++.+|++.. +||+
T Consensus 106 ~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ep~~ 185 (414)
T PRK12890 106 AALREAGIRPPHPLEVIAFTNEEGVRFGPSMIGSRALAGTLDVEAVLATRDDDGTTLAEALRRIGGDPDALPGALRPPGA 185 (414)
T ss_pred HHHHHcCCCCCCCeEEEEEecccccccCCccccHHHHHcccChHHHHhccCCCCCCHHHHHHHcCCChhhccccccCCCC
Confidence 466777777899999999999997320 0157776654211 01334444332 4442
Q ss_pred --------------------CCCceeeeeeeEEEEEEEeecCCCcCC-CC-CCCCHHHHHHHHHHHHHHHHhcCCCCCCC
Q 028821 57 --------------------DKQPCIGTGGMIPWKLHVTGKLFHSGL-PH-KAINPLELAMEALKVIQTRFYKDFPPHPK 114 (203)
Q Consensus 57 --------------------~~~i~~~~~g~~~~~i~~~G~~~Hss~-p~-~g~NAi~~~~~~l~~l~~~~~~~~~~~~~ 114 (203)
...++++++|..+++|+++|+++|+|. |+ .+.||+..+++++..|+++..+. .
T Consensus 186 ~~~~~~~h~~~g~~~~~~~~~~~i~~~~kG~~~~~i~v~Gk~aHas~~P~~~g~nAI~~~~~~i~~l~~~~~~~-~---- 260 (414)
T PRK12890 186 VAAFLELHIEQGPVLEAEGLPIGVVTAIQGIRRQAVTVEGEANHAGTTPMDLRRDALVAAAELVTAMERRARAL-L---- 260 (414)
T ss_pred ccEEEEEeeCcCHHHHhCCCceEEEEeecCcEEEEEEEEEECCCCCcCChhhccCHHHHHHHHHHHHHHHHHhc-C----
Confidence 234678999999999999999999985 85 45899999999999998764221 1
Q ss_pred ccccCCCCCceEeeEEEecCCCccceeCCeEEEEEEeecCCCCCHHHHHHHHHHHHHHhhhc
Q 028821 115 EQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN 176 (203)
Q Consensus 115 ~~~~~~~~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~~~~~~~~~~~~~i~~~~~~~~~~ 176 (203)
.+.+++++.++.|+...|+||++|++.+|+|++|+++.+++.++|++.+++....
T Consensus 261 -------~~~~~~~g~i~~gg~~~NvIP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~ 315 (414)
T PRK12890 261 -------HDLVATVGRLDVEPNAINVVPGRVVFTLDLRSPDDAVLEAAEAALLAELEAIAAA 315 (414)
T ss_pred -------CCeEEEEEEEEECCCCceEECCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1367899999844689999999999999999999999999999999998886543
No 36
>PRK06446 hypothetical protein; Provisional
Probab=99.89 E-value=1.1e-22 Score=171.73 Aligned_cols=191 Identities=18% Similarity=0.175 Sum_probs=134.9
Q ss_pred cccccccCCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCCCC------CceeeeeeeEEEEEEEee
Q 028821 3 KLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK------QPCIGTGGMIPWKLHVTG 76 (203)
Q Consensus 3 ~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~------~i~~~~~g~~~~~i~~~G 76 (203)
.|++.+ .++++|.|+|++|||.|+ .|+++++++. ...+++|++|+ ||+.. .++++++|..+++++++|
T Consensus 117 ~l~~~~-~~~~~i~~~~~~dEE~g~---~g~~~~l~~~-~~~~~~d~vi~-E~~~~~~~~~~~i~~~~kG~~~~~l~v~G 190 (436)
T PRK06446 117 HLIDKH-KLNVNVKFLYEGEEEIGS---PNLEDFIEKN-KNKLKADSVIM-EGAGLDPKGRPQIVLGVKGLLYVELVLRT 190 (436)
T ss_pred HHHHcC-CCCCCEEEEEEcccccCC---HhHHHHHHHH-HHHhCCCEEEE-CCCCccCCCCeEEEEecCeEEEEEEEEEe
Confidence 444443 577899999999999998 6999998752 11245677764 87654 578899999999999999
Q ss_pred --cCCCcCCCCCCCCHHHHHHHHHHHHHHHHh----------------------cCCCCC-------------CCcc---
Q 028821 77 --KLFHSGLPHKAINPLELAMEALKVIQTRFY----------------------KDFPPH-------------PKEQ--- 116 (203)
Q Consensus 77 --~~~Hss~p~~g~NAi~~~~~~l~~l~~~~~----------------------~~~~~~-------------~~~~--- 116 (203)
+++|+|.|+.|.||+..+++++..|.+... +.++-. ....
T Consensus 191 ~~~~~Hss~p~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 270 (436)
T PRK06446 191 GTKDLHSSNAPIVRNPAWDLVKLLSTLVDGEGRVLIPGFYDDVRELTEEERELLKKYDIDVEELRKALGFKELKYSDREK 270 (436)
T ss_pred CCCCCCCCCCccCCCHHHHHHHHHHhhCCCCCCEEccchhcCCCCCCHHHHHHHHhCCCCHHHHHHHhCCccccCCCccc
Confidence 999999999999999999999999864210 000000 0000
Q ss_pred -ccCCCCCceEeeEEEecCC----CccceeCCeEEEEEEeecCCCCCHHHHHHHHHHHHHHhhhcchhccccCCCCCCCC
Q 028821 117 -VYGFETPSTMKPTQWSYPG----GGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVL 191 (203)
Q Consensus 117 -~~~~~~~~~~~~~~i~~gg----~~~nvip~~~~~~~~iR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (203)
........++|++.+. +| ...|+||+.|++++|+|++|+++.+++.+.|++.+.+....++........+..+.
T Consensus 271 ~~~~~~~~~t~nv~~i~-~g~~~~~~~nvvP~~a~~~~d~R~~p~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~p~~~~ 349 (436)
T PRK06446 271 IAEALLTEPTCNIDGFY-SGYTGKGSKTIVPSRAFAKLDFRLVPNQDPYKIFELLKKHLQKVGFNGEIIVHGFEYPVRTS 349 (436)
T ss_pred HHHHHHhCCcEEEeeee-ccccCCCCCcEecCceEEEEEEEcCCCCCHHHHHHHHHHHHHHcCCCeEEEEcCCcceeecC
Confidence 0001123678999888 54 45799999999999999999999999999999999885433331111112334445
Q ss_pred CCCCccccc
Q 028821 192 PDENIRGRQ 200 (203)
Q Consensus 192 ~~~~~~~~~ 200 (203)
+++++.+.+
T Consensus 350 ~~~~~v~~l 358 (436)
T PRK06446 350 VNSKVVKAM 358 (436)
T ss_pred CCCHHHHHH
Confidence 667665544
No 37
>PRK08596 acetylornithine deacetylase; Validated
Probab=99.89 E-value=8.8e-22 Score=165.65 Aligned_cols=162 Identities=22% Similarity=0.299 Sum_probs=130.5
Q ss_pred ccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCCCCCceeeeeeeEEEEEEEeec----
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGK---- 77 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~~~G~---- 77 (203)
++|++.+..++++|.|+|++|||+|+ .|++++++++ +.+|++|+.||+... +++++|...+.++++|.
T Consensus 131 ~~l~~~~~~~~~~v~~~~~~dEE~g~---~G~~~~~~~~----~~~d~~i~~ep~~~~-~~~~~G~~~~~~~v~g~~~~~ 202 (421)
T PRK08596 131 QLLHEAGIELPGDLIFQSVIGEEVGE---AGTLQCCERG----YDADFAVVVDTSDLH-MQGQGGVITGWITVKSPQTFH 202 (421)
T ss_pred HHHHHcCCCCCCcEEEEEEeccccCC---cCHHHHHhcC----CCCCEEEECCCCCCc-cccccceeeEEEEEEeecccc
Confidence 56777777889999999999999987 6999999875 356899999997765 47899988778888775
Q ss_pred ------CCCcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCccccCC-CCCceEeeEEEecCCCccceeCCeEEEEEE
Q 028821 78 ------LFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGF-ETPSTMKPTQWSYPGGGINQIPGECTVSGD 150 (203)
Q Consensus 78 ------~~Hss~p~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~gg~~~nvip~~~~~~~~ 150 (203)
.+|++.|+.|.||+..+++++..|..+... +.... ....+ .+..+++++.|+ ||...|+||++|++.+|
T Consensus 203 ~~~~~~~~H~~~p~~G~nai~~~~~~i~~l~~~~~~-~~~~~--~~~~~~~~~~t~~v~~i~-gG~~~nvvP~~~~~~~d 278 (421)
T PRK08596 203 DGTRRQMIHAGGGLFGASAIEKMMKIIQSLQELERH-WAVMK--SYPGFPPGTNTINPAVIE-GGRHAAFIADECRLWIT 278 (421)
T ss_pred cccccccccccCCccCcCHHHHHHHHHHHHHHHHHH-Hhhcc--cCccCCCCCcceeeeeee-CCCCCCccCceEEEEEE
Confidence 379999999999999999999999765311 10000 00011 123678999999 99999999999999999
Q ss_pred eecCCCCCHHHHHHHHHHHHHHhhh
Q 028821 151 VRLTPFYNVTDVMKRLQEYVDDINE 175 (203)
Q Consensus 151 iR~~~~~~~~~~~~~i~~~~~~~~~ 175 (203)
+|++|+++.+++.++|++.+.+...
T Consensus 279 ~R~~p~~~~~~v~~~i~~~~~~~~~ 303 (421)
T PRK08596 279 VHFYPNETYEQVIKEIEEYIGKVAA 303 (421)
T ss_pred eeeCCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999987643
No 38
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=99.88 E-value=1.7e-22 Score=166.72 Aligned_cols=151 Identities=17% Similarity=0.260 Sum_probs=123.4
Q ss_pred ccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCCC--CCceeeeeeeEEEEEEEeecCC
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD--KQPCIGTGGMIPWKLHVTGKLF 79 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~--~~i~~~~~g~~~~~i~~~G~~~ 79 (203)
++|++.+ .++++|+|+|++|||.|+ .|++.+++.+ +.+|+++..+++. +.++++++|..+++|+++|+++
T Consensus 113 ~~l~~~~-~~~~~v~~~~~~~EE~g~---~G~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~g~~~~~i~~~G~~~ 184 (361)
T TIGR01883 113 DVLSTEE-TPHGTIEFIFTVKEELGL---IGMRLFDESK----ITAAYGYCLDAPGEVGNIQLAAPTQVKVDATIAGKDA 184 (361)
T ss_pred HHHHhcC-CCCCCEEEEEEcccccCc---hhHhHhChhh----cCcceeEEEeCCCCcceEEecCCceEEEEEEEEeeec
Confidence 3455554 567899999999999987 6999887643 3456777777653 5678889999999999999999
Q ss_pred CcC-CCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCceEeeEEEecCCCccceeCCeEEEEEEeecCCCCC
Q 028821 80 HSG-LPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYN 158 (203)
Q Consensus 80 Hss-~p~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~~~~~~ 158 (203)
|++ .|+.|+||+..+++++..++.. ..++ ..+++++.++ ||...|+||++|++.+|+|+++..+
T Consensus 185 Ha~~~p~~g~nAi~~~~~~i~~l~~~---~~~~-----------~~~~~i~~i~-gG~~~nvVP~~~~~~~diR~~~~~~ 249 (361)
T TIGR01883 185 HAGLVPEDGISAISVARMAIHAMRLG---RIDE-----------ETTANIGSFS-GGVNTNIVQDEQLIVAEARSLSFRK 249 (361)
T ss_pred CCCCCcccCcCHHHHHHHHHHhcccc---CCCC-----------ccccccceee-cCCccCccCCceEEEEEEecCCHHH
Confidence 985 7999999999999999887532 1111 2567889998 9999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHhhh
Q 028821 159 VTDVMKRLQEYVDDINE 175 (203)
Q Consensus 159 ~~~~~~~i~~~~~~~~~ 175 (203)
.+++.++|++.++....
T Consensus 250 ~~~~~~~i~~~i~~~~~ 266 (361)
T TIGR01883 250 AEAQVQTMRERFEQAAE 266 (361)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888888877643
No 39
>PRK07473 carboxypeptidase; Provisional
Probab=99.88 E-value=8.1e-22 Score=163.54 Aligned_cols=148 Identities=13% Similarity=0.142 Sum_probs=122.1
Q ss_pred ccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCCC--CCceeeeeeeEEEEEEEeecCC
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD--KQPCIGTGGMIPWKLHVTGKLF 79 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~--~~i~~~~~g~~~~~i~~~G~~~ 79 (203)
++|++.+..++++|.|+|++|||.|+ .|++.+++++. .++|++|++||+. +.++++++|..+++|+++|+++
T Consensus 125 ~~l~~~~~~~~~~v~~~~~~dEE~g~---~g~~~~~~~~~---~~~d~~iv~ep~~~~~~v~~~~~G~~~~~v~~~G~~a 198 (376)
T PRK07473 125 RQLARAGITTPLPITVLFTPDEEVGT---PSTRDLIEAEA---ARNKYVLVPEPGRPDNGVVTGRYAIARFNLEATGRPS 198 (376)
T ss_pred HHHHHcCCCCCCCEEEEEeCCcccCC---ccHHHHHHHhh---ccCCEEEEeCCCCCCCCEEEECeeeEEEEEEEEeEcC
Confidence 45667776677899999999999988 69999998643 2468999999985 4688999999999999999999
Q ss_pred CcC-CCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCceEeeEEEecCCCccceeCCeEEEEEEeecCCCCC
Q 028821 80 HSG-LPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYN 158 (203)
Q Consensus 80 Hss-~p~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~~~~~~ 158 (203)
|++ .|+.|+||+..+++++..|+++.. . ..+++++.|+ ||.+.|+||++|++.+++|......
T Consensus 199 Hag~~p~~g~nAi~~~~~~i~~l~~~~~----~-----------~~~~~vg~i~-gg~~~n~VP~~~~~~~d~r~~~~~~ 262 (376)
T PRK07473 199 HAGATLSEGRSAIREMARQILAIDAMTT----E-----------DCTFSVGIVH-GGQWVNCVATTCTGEALSMAKRQAD 262 (376)
T ss_pred CCCCCcccCcCHHHHHHHHHHHHHHhcC----C-----------CceEeEeeEE-cCCCCcCCCCceEEEEEEEeCCHhH
Confidence 986 799999999999999999876521 1 2578999999 8899999999999999999877555
Q ss_pred HHHHHHHHHHHHH
Q 028821 159 VTDVMKRLQEYVD 171 (203)
Q Consensus 159 ~~~~~~~i~~~~~ 171 (203)
.+++.+++.+.++
T Consensus 263 ~~~~~~~i~~~~~ 275 (376)
T PRK07473 263 LDRGVARMLALSG 275 (376)
T ss_pred HHHHHHHHHHhhC
Confidence 5555555554443
No 40
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=99.88 E-value=6e-22 Score=165.69 Aligned_cols=183 Identities=17% Similarity=0.158 Sum_probs=131.4
Q ss_pred ccccccccCCceeEEEEEEecCCC-----CCCCCccHHHHHhcc-------cc-C-C---------CCCCCEEEeeCCC-
Q 028821 2 RKLGETKLKLKSTVIAVFIASEEN-----SAITGVGVDALVKDG-------LL-N-K---------LKGGPLYWIDTAD- 57 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~-----g~~~~~G~~~~~~~~-------~~-~-~---------~~~d~~i~~e~~~- 57 (203)
++|++.+..++++|.|++++|||. ++ .|++.++... +. . + +.++.++..+++.
T Consensus 99 ~~l~~~g~~~~~~i~~~~~~dEE~~~f~~~~---~Gs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~ 175 (401)
T TIGR01879 99 DALKEAYVVPLHPIEVVAFTEEEGSRFPYGM---WGSRNMVGLANPEDVRNICDAKGISFAEAMKACGPDLPNQPLRPRG 175 (401)
T ss_pred HHHHHcCCCCCCCeEEEEEeCCcCcCccccc---ccHHHHhcccchhHHHhCcCCCCCCHHHHHHHcCCCcccccccccc
Confidence 578888889999999999999997 44 6888886421 00 0 1 1223333233322
Q ss_pred ----------------------CCceeeeeeeEEEEEEEeecCCCcCC-CC-CCCCHHHHHHHHHHHHHHHHhcCCCCCC
Q 028821 58 ----------------------KQPCIGTGGMIPWKLHVTGKLFHSGL-PH-KAINPLELAMEALKVIQTRFYKDFPPHP 113 (203)
Q Consensus 58 ----------------------~~i~~~~~g~~~~~i~~~G~~~Hss~-p~-~g~NAi~~~~~~l~~l~~~~~~~~~~~~ 113 (203)
..++.+++|..|++|+++|+++|++. |+ .|.||+..+++++..++.+..+. ..
T Consensus 176 ~~~~~~e~Hieqg~~l~~~g~~~~v~~~~~G~~~~~i~v~G~~aHa~~~p~~~g~nAi~~aa~~i~~l~~l~~~~-~~-- 252 (401)
T TIGR01879 176 DIKAYVELHIEQGPVLESNGQPIGVVNAIAGQRWYKVTLNGESNHAGTTPMSLRRDPLVAASRIIHQVEEKAKRM-GD-- 252 (401)
T ss_pred cccEEEEEEEcCCcChhhCCCeEEEEEEecCcEEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhc-CC--
Confidence 23567899999999999999999985 53 67999999999999998764321 11
Q ss_pred CccccCCCCCceEeeEEEecCCCccceeCCeEEEEEEeecCCCCCHHHHHHHHHHHHHHhhhc--ch-hccccCCCCCCC
Q 028821 114 KEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN--IE-KLDTRGPVSKYV 190 (203)
Q Consensus 114 ~~~~~~~~~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~~~~~~~~~~~~~i~~~~~~~~~~--~~-~~~~~~~~~~~~ 190 (203)
+.+.+++.|+.++...|+||++|++.+|+|++|+++.+++.++|++.++++... ++ .+.... ..+.+
T Consensus 253 ---------~~~~~vg~i~~g~~~~NvVP~~a~~~~diR~~p~~~~e~v~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~ 322 (401)
T TIGR01879 253 ---------PTVGTVGKVEARPNGVNVIPGKVTFTLDLRHTDAAVLRDFTQQLENDIKAISDERDIGIDIERWM-DEEPV 322 (401)
T ss_pred ---------CeEEEEEEEEecCCceEEECCEEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHcCceEEEEEee-cCCCc
Confidence 256789999833577999999999999999999999999999999999886543 22 111111 22334
Q ss_pred CCCCCccccc
Q 028821 191 LPDENIRGRQ 200 (203)
Q Consensus 191 ~~~~~~~~~~ 200 (203)
.++++|.+.+
T Consensus 323 ~~d~~lv~~l 332 (401)
T TIGR01879 323 PCSEELVAAL 332 (401)
T ss_pred CCCHHHHHHH
Confidence 5677776554
No 41
>PRK08201 hypothetical protein; Provisional
Probab=99.87 E-value=5.7e-22 Score=168.39 Aligned_cols=194 Identities=18% Similarity=0.137 Sum_probs=134.6
Q ss_pred ccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCCCC-----CceeeeeeeEEEEEEEee
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-----QPCIGTGGMIPWKLHVTG 76 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~-----~i~~~~~g~~~~~i~~~G 76 (203)
++|++.+..++++|.|+|++|||.|+ .|+..++++.. ..+++|++|++||+.. .++++++|..+++|+++|
T Consensus 133 ~~l~~~~~~~~~~i~~~~~~dEE~g~---~g~~~~l~~~~-~~~~~d~~ii~e~~~~~~~~~~i~~g~kG~~~~~l~v~G 208 (456)
T PRK08201 133 EALLKVEGTLPVNVKFCIEGEEEIGS---PNLDSFVEEEK-DKLAADVVLISDTTLLGPGKPAICYGLRGLAALEIDVRG 208 (456)
T ss_pred HHHHHhcCCCCCCEEEEEEcccccCC---ccHHHHHHhhH-HhccCCEEEEeCCCcCCCCCEEEEEecCCeEEEEEEEEe
Confidence 34555555677899999999999998 68988887531 2256789999998753 378899999999999999
Q ss_pred cCC--CcCCCCC-CCCHHHHHHHHHHHHHHHHhc--------CCCCC------------------------CCcc-ccC-
Q 028821 77 KLF--HSGLPHK-AINPLELAMEALKVIQTRFYK--------DFPPH------------------------PKEQ-VYG- 119 (203)
Q Consensus 77 ~~~--Hss~p~~-g~NAi~~~~~~l~~l~~~~~~--------~~~~~------------------------~~~~-~~~- 119 (203)
+++ |||.|.. +.||+..|++++..|.+...+ .+.+. .... ...
T Consensus 209 ~~~~~Hs~~~~~~~~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (456)
T PRK08201 209 AKGDLHSGLYGGAVPNALHALVQLLASLHDEHGTVAVEGFYDGVRPLTPEEREEFAALGFDEEKLKRELGVDELFGEEGY 288 (456)
T ss_pred CCCCCccccccCcCCCHHHHHHHHHHhcCCCCCCEecCCcccCCCCCCHHHHHHHHhCCCCHHHHHhhcCCccccCCcch
Confidence 998 9987654 579999999999998642100 00000 0000 000
Q ss_pred -----CCCCceEeeEEEecCCC----ccceeCCeEEEEEEeecCCCCCHHHHHHHHHHHHHHhhh---cchhccccCCCC
Q 028821 120 -----FETPSTMKPTQWSYPGG----GINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINE---NIEKLDTRGPVS 187 (203)
Q Consensus 120 -----~~~~~~~~~~~i~~gg~----~~nvip~~~~~~~~iR~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~ 187 (203)
.....+++++.|. ||. ..|+||++|++.+|+|++|+++.+++.++|++.+++... +++........+
T Consensus 289 ~~~~~~~~~~t~~i~~i~-gg~~~~~~~NvVP~~a~~~~diR~~p~~~~e~v~~~i~~~l~~~~~~~~~v~~~~~~~~~~ 367 (456)
T PRK08201 289 TALERTWARPTLELNGVY-GGFQGEGTKTVIPAEAHAKITCRLVPDQDPQEILDLIEAHLQAHTPAGVRVTIRRFDKGPA 367 (456)
T ss_pred HHHHHHHhCCcEEEEeee-cCCCCCCCceEECcceEEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEECCCcCc
Confidence 0012478888887 553 479999999999999999999999999999999887421 233111112233
Q ss_pred CCCCCCCCccccc
Q 028821 188 KYVLPDENIRGRQ 200 (203)
Q Consensus 188 ~~~~~~~~~~~~~ 200 (203)
..+.+++++.+.+
T Consensus 368 ~~~~~~~~~~~~l 380 (456)
T PRK08201 368 FVAPIDHPAIQAA 380 (456)
T ss_pred eecCCCCHHHHHH
Confidence 3445666666544
No 42
>PRK09104 hypothetical protein; Validated
Probab=99.87 E-value=1.8e-21 Score=165.63 Aligned_cols=195 Identities=17% Similarity=0.126 Sum_probs=137.9
Q ss_pred ccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCCCC-----CceeeeeeeEEEEEEEee
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-----QPCIGTGGMIPWKLHVTG 76 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~-----~i~~~~~g~~~~~i~~~G 76 (203)
+.|++.+..++++|.|+|++|||+|+ .|+++++.+.. +.+++|++|+.|++.. .++++++|..+++|+++|
T Consensus 141 ~~l~~~~~~~~~~i~~~~~~dEE~g~---~g~~~~l~~~~-~~~~~d~~iv~E~~~~~~~~~~i~~~~kG~~~~~l~v~g 216 (464)
T PRK09104 141 RAWKAVTGSLPVRVTILFEGEEESGS---PSLVPFLEANA-EELKADVALVCDTGMWDRETPAITTSLRGLVGEEVTITA 216 (464)
T ss_pred HHHHHhcCCCCCcEEEEEECccccCC---ccHHHHHHhhH-HhcCCCEEEEeCCCCCCCCCeEEEeecCCeEEEEEEEEe
Confidence 45666655678899999999999998 68888886532 2246789999997642 467899999999999999
Q ss_pred --cCCCcCC-CCCCCCHHHHHHHHHHHHHHHHhc----------------------CCCCCCC----------cc---cc
Q 028821 77 --KLFHSGL-PHKAINPLELAMEALKVIQTRFYK----------------------DFPPHPK----------EQ---VY 118 (203)
Q Consensus 77 --~~~Hss~-p~~g~NAi~~~~~~l~~l~~~~~~----------------------~~~~~~~----------~~---~~ 118 (203)
+++|||. |+.|.||+..+++++..|.+.... ....... +. ..
T Consensus 217 ~~~~~Hss~~~~~g~nai~~~~~~l~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (464)
T PRK09104 217 ADRDLHSGLFGGAAANPIRVLTRILAGLHDETGRVTLPGFYDGVEELPPEILAQWKALGFTAEAFLGPVGLSIPAGEKGR 296 (464)
T ss_pred CCCCccccccCCccCCHHHHHHHHHHhccCCCCCEeCCccccCCCCCCHHHHHHHHhCCCCHHHHHHhcCCccccCcccH
Confidence 6899996 688999999999999988542100 0000000 00 00
Q ss_pred C----CCCCceEeeEEEecCCC----ccceeCCeEEEEEEeecCCCCCHHHHHHHHHHHHHHhh---hcchhccccCCCC
Q 028821 119 G----FETPSTMKPTQWSYPGG----GINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDIN---ENIEKLDTRGPVS 187 (203)
Q Consensus 119 ~----~~~~~~~~~~~i~~gg~----~~nvip~~~~~~~~iR~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~ 187 (203)
. .....+++++.|+ ||. ..|+||++|++.+|+|++|+++.+++.+.|++.+++.. .+++........+
T Consensus 297 ~~~~~~~~~~t~~i~~i~-gg~~~~~~~nvvP~~~~~~~diR~~p~~~~~~v~~~i~~~l~~~~~~~~~v~~~~~~~~~~ 375 (464)
T PRK09104 297 SVLEQIWSRPTCEINGIW-GGYTGEGFKTVIPAEASAKVSFRLVGGQDPAKIREAFRAYVRARLPADCSVEFHDHGGSPA 375 (464)
T ss_pred HHHHHHhhCCeEEEeccc-cCCCCCCCccEecCceEEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEecCCCCc
Confidence 0 0112578999998 664 46999999999999999999999999999999998642 1233111112234
Q ss_pred CCCCCCCCcccccc
Q 028821 188 KYVLPDENIRGRQL 201 (203)
Q Consensus 188 ~~~~~~~~~~~~~~ 201 (203)
..+.+++++...+.
T Consensus 376 ~~~~~~~~~v~~l~ 389 (464)
T PRK09104 376 IALPYDSPALAAAK 389 (464)
T ss_pred eECCCCCHHHHHHH
Confidence 45567777766553
No 43
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=99.86 E-value=6.1e-21 Score=154.01 Aligned_cols=172 Identities=18% Similarity=0.230 Sum_probs=129.2
Q ss_pred ccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeC--CCCC---ceeeeeeeEEEEEEEee
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDT--ADKQ---PCIGTGGMIPWKLHVTG 76 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~--~~~~---i~~~~~g~~~~~i~~~G 76 (203)
+.|+..+++++++|.+.|++|||+++. .|++.+.+...+++.. -+.+.-|+ +... ++++++|.+|+++++.|
T Consensus 142 r~L~~~g~kp~Rti~lsfvpDEEi~G~--~Gm~~fa~~~~~~~l~-~~filDEG~~se~d~~~vfyaEkg~w~~~v~~~G 218 (420)
T KOG2275|consen 142 RNLKASGFKPKRTIHLSFVPDEEIGGH--IGMKEFAKTEEFKKLN-LGFILDEGGATENDFATVFYAEKGPWWLKVTANG 218 (420)
T ss_pred HHHHhcCCCcCceEEEEecCchhccCc--chHHHHhhhhhhcccc-eeEEecCCCCCcccceeEEEEeeceeEEEEEecC
Confidence 467788999999999999999999974 7999998733333322 24445566 3333 58899999999999999
Q ss_pred cCCCcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCceEeeEEEecCCCccceeCCeEEEEEEeecCCC
Q 028821 77 KLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPF 156 (203)
Q Consensus 77 ~~~Hss~p~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~~~~ 156 (203)
++||+|.|-. ..|+..+.+++.++.+...+..+-............+|+|++.|+ ||.+.|++|+..++.+|+|..+.
T Consensus 219 ~~GHss~~~~-nTa~~~l~klv~~~~~fr~~q~~~l~~~p~~~~~~vtT~Nv~~i~-GGv~~N~~P~~~ea~~dirv~~~ 296 (420)
T KOG2275|consen 219 TPGHSSYPPP-NTAIEKLEKLVESLEEFREKQVDLLASGPKLALGDVTTINVGIIN-GGVQSNVLPETFEAAFDIRVRPH 296 (420)
T ss_pred CCCCCCCCCC-ccHHHHHHHHHHHHHHhHHHHHHHhhcCCceeccceeEEeeeeee-cccccCcCchhheeeeeeEeccC
Confidence 9999998422 256777777777776543111000000112334456899999999 99999999999999999999999
Q ss_pred CCHHHHHHHH-HHHHHHhhhcch
Q 028821 157 YNVTDVMKRL-QEYVDDINENIE 178 (203)
Q Consensus 157 ~~~~~~~~~i-~~~~~~~~~~~~ 178 (203)
.+..++.+++ ++++++.+..++
T Consensus 297 ~d~~~i~~~l~~~w~~~~~eg~t 319 (420)
T KOG2275|consen 297 VDVKAIRDQLEDEWAEEAGEGVT 319 (420)
T ss_pred CCHHHHHHHHHHHhhhhcCCceE
Confidence 9999999999 888888876554
No 44
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=99.86 E-value=8.9e-21 Score=155.15 Aligned_cols=162 Identities=18% Similarity=0.201 Sum_probs=123.1
Q ss_pred ceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCCCC-CceeeeeeeEEEEEEEeecCCCcCCCCCCCCH
Q 028821 12 KSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-QPCIGTGGMIPWKLHVTGKLFHSGLPHKAINP 90 (203)
Q Consensus 12 ~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~-~i~~~~~g~~~~~i~~~G~~~Hss~p~~g~NA 90 (203)
.++|.|+|++|||+|+ .|++++++... ++++|++||+.. .++++++|..+++++++|+++|+|.|. ||
T Consensus 101 ~~~i~~~~~~dEE~g~---~G~~~~~~~~~-----~~~~ii~ept~~~~i~~~~kG~~~~~v~~~G~~~Hss~~~---~a 169 (336)
T TIGR01902 101 GIKVIVSGLVDEESSS---KGAREVIDKNY-----PFYVIVGEPSGAEGITLGYKGSLQLKIMCEGTPFHSSSAG---NA 169 (336)
T ss_pred CCcEEEEEEeCcccCC---ccHHHHHhhcC-----CCEEEEecCCCCcceeeeeeeEEEEEEEEEecCcccCCCh---hH
Confidence 4689999999999987 79999997632 357899999874 688999999999999999999999875 49
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCceEeeEEEecCCCccceeCCeEEEEEEeecCCCCCHHHHHHHHHHHH
Q 028821 91 LELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYV 170 (203)
Q Consensus 91 i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~~~~~~~~~~~~~i~~~~ 170 (203)
+..+..+++.+.+.+..... + ...+++++.++ ||.+.|+||++|++++|+|++|+++.+++.+++++.
T Consensus 170 i~~~~~~~~~l~~~~~~~~~---------~-~~~~~~~~~i~-gg~~~nvIP~~a~~~idiR~~p~~~~~~~~~~i~~~- 237 (336)
T TIGR01902 170 AELLIDYSKKIIEVYKQPEN---------Y-DKPSIVPTIIR-FGESYNDTPAKLELHFDLRYPPNNKPEEAIKEITDK- 237 (336)
T ss_pred HHHHHHHHHHHHHHhccccC---------C-CCCcceeEEEE-ccCCCcCCCceEEEEEEEeeCCCCCHHHHHHHHHhc-
Confidence 99999999888633221111 1 12457888888 899999999999999999999999999998888761
Q ss_pred HHhhhcchhccccCCCCCCCCCCCCccccc
Q 028821 171 DDINENIEKLDTRGPVSKYVLPDENIRGRQ 200 (203)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (203)
...+++.. ....+..+.+++++.+.+
T Consensus 238 --~~~~~~~~--~~~~p~~~~~~~~lv~~~ 263 (336)
T TIGR01902 238 --FPICLEIV--DETPPYKVSRNNPLVRAF 263 (336)
T ss_pred --cCceEEEE--eccCceecCCCCHHHHHH
Confidence 11122211 122334456777776654
No 45
>PRK07906 hypothetical protein; Provisional
Probab=99.86 E-value=4.2e-21 Score=161.80 Aligned_cols=189 Identities=18% Similarity=0.194 Sum_probs=128.4
Q ss_pred ccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCCCC-----------CceeeeeeeEEE
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-----------QPCIGTGGMIPW 70 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~-----------~i~~~~~g~~~~ 70 (203)
++|++.+..++++|.|+|++|||+++. .|++.+++... ..++...+++.|++.. .++++++|..++
T Consensus 118 ~~l~~~~~~~~~~i~~~~~~dEE~g~~--~g~~~l~~~~~-~~~~~~~~ii~e~~~~~~~~~~~~~~~~i~~~~kG~~~~ 194 (426)
T PRK07906 118 RHLARTGRRPPRDLVFAFVADEEAGGT--YGAHWLVDNHP-ELFEGVTEAISEVGGFSLTVPGRDRLYLIETAEKGLAWM 194 (426)
T ss_pred HHHHHcCCCCCccEEEEEecCcccchh--hhHHHHHHHHH-HhccchheEEECCCceeeccCCCccEEEEEeccceEEEE
Confidence 467777778899999999999999762 59999987531 1122123455666532 256789999999
Q ss_pred EEEEeecCCCcCCCCCCCCHHHHHHHHHHHHHHHHhc------------CCCCCCC----cc--------------ccCC
Q 028821 71 KLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYK------------DFPPHPK----EQ--------------VYGF 120 (203)
Q Consensus 71 ~i~~~G~~~Hss~p~~g~NAi~~~~~~l~~l~~~~~~------------~~~~~~~----~~--------------~~~~ 120 (203)
+|+++|+++|+|.|+. .||+..+++++..+.+.... ....... .. ....
T Consensus 195 ~v~v~G~~~Hss~p~~-~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 273 (426)
T PRK07906 195 RLTARGRAGHGSMVND-DNAVTRLAEAVARIGRHRWPLVLTPTVRAFLDGVAELTGLEFDPDDPDALLAKLGPAARMVGA 273 (426)
T ss_pred EEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHHhCCCCcccCHHHHHHHHHhhhhcCcccCcccHHHHHHHHhhcCcchhh
Confidence 9999999999999874 99999999999998643110 0000000 00 0000
Q ss_pred CCCceEeeEEEecCCCccceeCCeEEEEEEeecCCCCCHHHHHHHHHHHHHHhhhcchh-ccccCCCCCCCCCCCCcccc
Q 028821 121 ETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEK-LDTRGPVSKYVLPDENIRGR 199 (203)
Q Consensus 121 ~~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 199 (203)
...++++++.|+ ||.+.|+||++|++.+|+|++|+++ +++.++|++.+.. .++. .. ....+..+.+++++...
T Consensus 274 ~~~~t~~~~~i~-gG~~~NviP~~~~~~~d~R~~p~~~-~~i~~~i~~~~~~---~v~~~~~-~~~~~~~~~~~~~~v~~ 347 (426)
T PRK07906 274 TLRNTANPTMLK-AGYKVNVIPGTAEAVVDGRFLPGRE-EEFLATVDELLGP---DVEREWV-HRDPALETPFDGPLVDA 347 (426)
T ss_pred hhcccccceeEe-ccCccccCCCceEEEEEEeECCCCc-HHHHHHHHHHhCC---CeEEEEe-cCCCCCCCCCCcHHHHH
Confidence 013588999998 8889999999999999999999886 6677777665532 2331 11 12334445667776654
Q ss_pred c
Q 028821 200 Q 200 (203)
Q Consensus 200 ~ 200 (203)
+
T Consensus 348 l 348 (426)
T PRK07906 348 M 348 (426)
T ss_pred H
Confidence 4
No 46
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=99.86 E-value=1.7e-20 Score=159.57 Aligned_cols=186 Identities=14% Similarity=0.035 Sum_probs=127.2
Q ss_pred CccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEE---------EeeCCCCCce----------
Q 028821 1 MRKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLY---------WIDTADKQPC---------- 61 (203)
Q Consensus 1 ~k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i---------~~e~~~~~i~---------- 61 (203)
+++|++.+..++++|+|+|++|||+|+ .|++++++.+. .+|++| ..|++...+.
T Consensus 129 ~~~l~~~~~~~~~~i~~~~~~dEE~g~---~g~~~~~~~~~----~~d~~~~~d~~~~~~~ge~g~~~~~~~~~~~~~~~ 201 (466)
T TIGR01886 129 MKILKELGLPPSKKIRFVVGTNEETGW---VDMDYYFKHEE----TPDFGFSPDAEFPIINGEKGNFTLELSFKGDNKGD 201 (466)
T ss_pred HHHHHHhCCCCCCCEEEEEECccccCc---ccHHHHHhcCc----CCCEEEECCCCceeEEEecceEEEEEEEecCCCCc
Confidence 357788888899999999999999998 69999998653 234443 3333321100
Q ss_pred --------------------------------------eeeeeeE---------EEEEEEeecCCCcCCCCCCCCHHHHH
Q 028821 62 --------------------------------------IGTGGMI---------PWKLHVTGKLFHSGLPHKAINPLELA 94 (203)
Q Consensus 62 --------------------------------------~~~~g~~---------~~~i~~~G~~~Hss~p~~g~NAi~~~ 94 (203)
.+++|.. |++|+++|+++|+|.|+.|+|||..|
T Consensus 202 ~~~~~~~~g~~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~i~v~G~~aH~s~P~~G~NAi~~~ 281 (466)
T TIGR01886 202 YVLDSFKAGLAENMVPQVARAVISGPDAEALKAAYESFLADKASLDGSFEINDESATIVLIGKGAHGAAPQVGINSATFL 281 (466)
T ss_pred eeEEEEEcCCcCCccCCeeEEEEecCCHHHHHHHHHHHHhhccCceEEEEEeCCEEEEEEEeeEcccCCCCCCcCHHHHH
Confidence 1233433 78899999999999999999999999
Q ss_pred HHHHHHH----------HHHHhcCCC-C----CC-CccccCCCCCceEeeEEEecCCCccceeCCeEEEEEEeecCCCCC
Q 028821 95 MEALKVI----------QTRFYKDFP-P----HP-KEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYN 158 (203)
Q Consensus 95 ~~~l~~l----------~~~~~~~~~-~----~~-~~~~~~~~~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~~~~~~ 158 (203)
++++..+ ..+ .+.+. . .. ........+..++|+|.|+ +|.. | ++|++.+|+|++|+++
T Consensus 282 ~~~l~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~g~~S~nvgvI~-gG~~-~---~~~~l~iD~R~~Pge~ 355 (466)
T TIGR01886 282 ALFLNQYAFAGGAKNFIHFL-AEVEHEDFYGEKLGIAFHDELMGDLAMNAGMFD-FDHA-N---KESKLLLNFRYPQGTS 355 (466)
T ss_pred HHHHHhccCChhHHHHHHHH-HHhcCCCCCcccCCCcccccCcCceEEEeEEEE-EecC-C---ceEEEEEEEecCCCCC
Confidence 9988773 111 11100 0 00 0001123346789999998 6644 3 7999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcchhccccCCCCCCCCCCCCcccccc
Q 028821 159 VTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGRQL 201 (203)
Q Consensus 159 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (203)
.+++.++|++.+... .+++.. .....+.++.++++|++.+.
T Consensus 356 ~eev~~eI~~~i~~~-~~v~~~-~~~~~P~~~~~ds~lv~~l~ 396 (466)
T TIGR01886 356 PETMQKQVLDKFGGI-VDVTYN-GHFEEPHYVPGSDPLVQTLL 396 (466)
T ss_pred HHHHHHHHHHHHhcc-cEEEEe-cccCCCcccCCCCHHHHHHH
Confidence 999999999988752 223311 11234566677888877654
No 47
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=99.85 E-value=2.1e-20 Score=156.75 Aligned_cols=190 Identities=23% Similarity=0.271 Sum_probs=133.2
Q ss_pred ccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhcccc-CCCCCCCEEEeeCC-----CCCceeeeeeeEEEEEEEe
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLL-NKLKGGPLYWIDTA-----DKQPCIGTGGMIPWKLHVT 75 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~-~~~~~d~~i~~e~~-----~~~i~~~~~g~~~~~i~~~ 75 (203)
+.|.+.+..++++|.++|++|||+++ .|+..++..+.. .++++|++|.+|++ ...++++++|..+++|+++
T Consensus 129 ~~l~~~~~~~~~~v~~~~~~dEE~g~---~~~~~~~~~~~~~~~~~~d~~i~~E~~~~~~~~~~~~~~~kG~~~~~v~v~ 205 (409)
T COG0624 129 SALKAAGGELPGDVRLLFTADEESGG---AGGKAYLEEGEEALGIRPDYEIVGEPTLESEGGDIIVVGHKGSLWLEVTVK 205 (409)
T ss_pred HHHHHhCCCCCeEEEEEEEeccccCC---cchHHHHHhcchhhccCCCEEEeCCCCCcccCCCeEEEcceeEEEEEEEEE
Confidence 45666667888999999999999998 688888876432 24678999999983 2345678999999999999
Q ss_pred ecCCCcCC--CCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCceEeeEEEec-------CCCccceeCCeEE
Q 028821 76 GKLFHSGL--PHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSY-------PGGGINQIPGECT 146 (203)
Q Consensus 76 G~~~Hss~--p~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-------gg~~~nvip~~~~ 146 (203)
|+++|+|. |+.+.|++..+...+.++.....+...+. +..+.+++++.+.. ++...|+||++|+
T Consensus 206 G~~~Has~~~p~~~~n~i~~a~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~nviP~~~~ 278 (409)
T COG0624 206 GKAGHASTTPPDLGRNPIHAAIEALAELIEELGDLAGEG-------FDGPLGLNVGLILAGPGASVNGGDKVNVIPGEAE 278 (409)
T ss_pred eecccccccCCcccccHHHHHHHHHHHHHHHhccccccc-------ccCCccccccccccCCcccccCCccCceecceEE
Confidence 99999998 89999955444444444432221111110 00023344554431 3344699999999
Q ss_pred EEEEeecCCCCCHHHHHHHHHHHHHHhhh--cch-hcc-ccCCCCCCCCCCCCcccccc
Q 028821 147 VSGDVRLTPFYNVTDVMKRLQEYVDDINE--NIE-KLD-TRGPVSKYVLPDENIRGRQL 201 (203)
Q Consensus 147 ~~~~iR~~~~~~~~~~~~~i~~~~~~~~~--~~~-~~~-~~~~~~~~~~~~~~~~~~~~ 201 (203)
+.+|+|+.|..+.+++.+++++.++.... .++ .+. .....+.++..++++..+|.
T Consensus 279 ~~~d~R~~p~~~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 337 (409)
T COG0624 279 ATVDIRLLPGEDLDDVLEELEAELRAIAPKEGVEYEIEPGLGEPPLPVPGDSPLVAALA 337 (409)
T ss_pred EEEEEecCCcCCHHHHHHHHHHHHHHhccccCceEEeccccCCccccCCCchHHHHHHH
Confidence 99999999999999999999999988754 343 222 13455667677777776553
No 48
>PRK07907 hypothetical protein; Provisional
Probab=99.84 E-value=2.5e-20 Score=158.05 Aligned_cols=188 Identities=12% Similarity=0.060 Sum_probs=132.8
Q ss_pred cCCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCCCC-----CceeeeeeeEEEEEEEe--ecCCCc
Q 028821 9 LKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-----QPCIGTGGMIPWKLHVT--GKLFHS 81 (203)
Q Consensus 9 ~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~-----~i~~~~~g~~~~~i~~~--G~~~Hs 81 (203)
..++++|.|++++|||+|+ .|++++++... ..+++|++|+.||+.. .++++++|..+++++++ |+++|+
T Consensus 141 ~~~~~~i~~~~~~dEE~g~---~g~~~~l~~~~-~~~~~d~~iv~E~~~~~~~~p~i~~~~kG~~~~~l~v~~~G~~~Hs 216 (449)
T PRK07907 141 GDLPVGVTVFVEGEEEMGS---PSLERLLAEHP-DLLAADVIVIADSGNWSVGVPALTTSLRGNADVVVTVRTLEHAVHS 216 (449)
T ss_pred cCCCCcEEEEEEcCcccCC---ccHHHHHHhch-HhhcCCEEEEecCCcCCCCCeEEEEecCCcEEEEEEEEECCCCCCC
Confidence 3567899999999999998 69999997631 2246789999999764 36789999999999998 899999
Q ss_pred CCC-CCCCCHHHHHHHHHHHHHHHHhc----CCCCCCCccccC---------------------------CCCCceEeeE
Q 028821 82 GLP-HKAINPLELAMEALKVIQTRFYK----DFPPHPKEQVYG---------------------------FETPSTMKPT 129 (203)
Q Consensus 82 s~p-~~g~NAi~~~~~~l~~l~~~~~~----~~~~~~~~~~~~---------------------------~~~~~~~~~~ 129 (203)
|.| ..+.||+..+++++..|.+...+ .+.......... .....+++++
T Consensus 217 s~~~~~~~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~ 296 (449)
T PRK07907 217 GQFGGAAPDALTALVRLLATLHDEDGNVAVDGLDATEPWLGVDYDEERFRADAGVLDGVELIGTGSVADRLWAKPAITVI 296 (449)
T ss_pred ccccccCCCHHHHHHHHHHhhCCCCCCEeCCCccCCCCcccccccHHHHHHHhhhhhcccccCCChHHHHhhhcCcEEEE
Confidence 974 66899999999999998653110 000000000000 0123577888
Q ss_pred EEecC--CCccceeCCeEEEEEEeecCCCCCHHHHHHHHHHHHHHhhh---cchhccccCCCCCCCCCCCCccccc
Q 028821 130 QWSYP--GGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINE---NIEKLDTRGPVSKYVLPDENIRGRQ 200 (203)
Q Consensus 130 ~i~~g--g~~~nvip~~~~~~~~iR~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (203)
.|+.+ +...|+||++|++++|+|++|+++.+++.+.|++.+++... +++........+..+.+++++.+.+
T Consensus 297 ~i~~~~~g~~~nvIP~~a~~~~diR~~p~~~~e~v~~~l~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l 372 (449)
T PRK07907 297 GIDAPPVAGASNALPPSARARLSLRVAPGQDAAEAQDALVAHLEAHAPWGAHVTVERGDAGQPFAADASGPAYDAA 372 (449)
T ss_pred eeecCCCCCCCCEecCceEEEEEEEcCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEECCCcCceeCCCCCHHHHHH
Confidence 88732 46789999999999999999999999999999999887522 2221111122334445667766544
No 49
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=99.84 E-value=3.7e-20 Score=155.02 Aligned_cols=164 Identities=16% Similarity=0.106 Sum_probs=122.1
Q ss_pred CccccccccCCceeEEEEEEecCCCCCC--CCccHHHHHhc----ccc---C-------------CC----------CCC
Q 028821 1 MRKLGETKLKLKSTVIAVFIASEENSAI--TGVGVDALVKD----GLL---N-------------KL----------KGG 48 (203)
Q Consensus 1 ~k~L~~~~~~~~~~v~l~~~~dEE~g~~--~~~G~~~~~~~----~~~---~-------------~~----------~~d 48 (203)
++.|++++.+++++|.+++..+||.+-. ...|++.+.-. ..+ + ++ +++
T Consensus 100 ~~~l~~~~~~~~~~i~vi~~~~EEg~rf~~~~~Gs~~~~g~~~~~~~~~~~d~~g~~~~~~~~~~g~~~~~~~~~~~~~~ 179 (406)
T TIGR03176 100 VDYLKEKYGAPLRTVEVLSMAEEEGSRFPYVFWGSKNIFGLAKPEDVRTIEDAKGIKFVDAMHACGFDLRKAPTVRDDIK 179 (406)
T ss_pred HHHHHHcCCCCCCCeEEEEeccccCccCCcccccHHHHhCCCCHHHHHhCcCCCCCCHHHHHHHcCCCcccccccccccc
Confidence 3578889899999999999999997610 01577777620 000 0 11 122
Q ss_pred CEEEeeCCCC----------CceeeeeeeEEEEEEEeecCCCcCCCCC--CCCHHHHHHHHHHHHHHHHhcCCCCCCCcc
Q 028821 49 PLYWIDTADK----------QPCIGTGGMIPWKLHVTGKLFHSGLPHK--AINPLELAMEALKVIQTRFYKDFPPHPKEQ 116 (203)
Q Consensus 49 ~~i~~e~~~~----------~i~~~~~g~~~~~i~~~G~~~Hss~p~~--g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~ 116 (203)
+.+-.|...| .++.+++|..+++|+++|+++|++.|.. +.||+..+++++..+.....+ ..
T Consensus 180 ~~~elHieqG~~Le~~g~~igiv~~~~G~~~~~v~v~GkaaHag~~p~~~r~dAi~aaa~~i~~l~~~~~~-~~------ 252 (406)
T TIGR03176 180 AFVELHIEQGCVLESEGQSIGVVNAIVGQRRYTVNLKGEANHAGTTPMSYRRDTVYAFSRICTQSIERAKE-IG------ 252 (406)
T ss_pred eEEEEEECCCcchHHCCCeEEEEeecccceEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHh-cC------
Confidence 3333443211 1346799999999999999999997554 489999999999998775421 11
Q ss_pred ccCCCCCceEeeEEEecCCCccceeCCeEEEEEEeecCCCCCHHHHHHHHHHHHHHhhhc
Q 028821 117 VYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN 176 (203)
Q Consensus 117 ~~~~~~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~~~~~~~~~~~~~i~~~~~~~~~~ 176 (203)
.+.++++|.|+.+|+..|+||++|++++|+|+++.++.+.+.++|++.+++++..
T Consensus 253 -----~~~~~tvG~I~~gg~~~NvIP~~a~~~~DiR~~~~~~~e~v~~~i~~~i~~ia~~ 307 (406)
T TIGR03176 253 -----DPLVLTFGKVEPVPNTVNVVPGETTFTIDCRHTDAAVLRNFTKELENDMKAIADE 307 (406)
T ss_pred -----CCcEEEEEEEEEcCCceEEECCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1357899999856788999999999999999999999999999999999887654
No 50
>PRK07318 dipeptidase PepV; Reviewed
Probab=99.83 E-value=3.2e-20 Score=158.00 Aligned_cols=190 Identities=15% Similarity=0.093 Sum_probs=125.3
Q ss_pred CccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhccccC--CCCCCC---EEEeeCCCCCc---------------
Q 028821 1 MRKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLN--KLKGGP---LYWIDTADKQP--------------- 60 (203)
Q Consensus 1 ~k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~--~~~~d~---~i~~e~~~~~i--------------- 60 (203)
|+.|++.+..++++|.|+|++|||+|+ .|++++++..... ++.+|+ ++..|++...+
T Consensus 130 l~~l~~~g~~~~~~i~l~~~~DEE~g~---~G~~~l~~~~~~~~~~~~~d~~~~vi~~E~g~~~~~~~~~~~~~~~~~~~ 206 (466)
T PRK07318 130 LKIIKELGLPLSKKVRFIVGTDEESGW---KCMDYYFEHEEAPDFGFSPDAEFPIINGEKGITTFDLVHFEGENEGDYVL 206 (466)
T ss_pred HHHHHHcCCCCCccEEEEEEcccccCc---hhHHHHHHhCCCCCEEEEeCCCCcEEEEEeeeEEEEEEeccccCCCCcee
Confidence 356777787888999999999999998 6999999863211 122232 34455431000
Q ss_pred -------------------------------------eeeeeeeE-----EEEEEEeecCCCcCCCCCCCCHHHHHHHHH
Q 028821 61 -------------------------------------CIGTGGMI-----PWKLHVTGKLFHSGLPHKAINPLELAMEAL 98 (203)
Q Consensus 61 -------------------------------------~~~~~g~~-----~~~i~~~G~~~Hss~p~~g~NAi~~~~~~l 98 (203)
..+++|.. +++|+++|+++|+|.|+.|.|||..|++++
T Consensus 207 ~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~kG~~~~~~~~~~i~v~G~aaH~s~p~~g~NAI~~~~~~i 286 (466)
T PRK07318 207 VSFKSGLRENMVPDSAEAVITGDDLDDLIAAFEAFLAENGLKGELEEEGGKLVLTVIGKSAHGSTPEKGVNAATYLAKFL 286 (466)
T ss_pred EEEEcCccceecCcccEEEEecCCHHHHHHHHHHHHhhcCceEEEEecCCEEEEEEEeeEcccCCCccCccHHHHHHHHH
Confidence 01456654 799999999999999999999999999999
Q ss_pred HHHHH------HH---hcCCCC----CC--CccccCCCCCceEeeEEEecCCCccceeCCeEEEEEEeecCCCCCHHHHH
Q 028821 99 KVIQT------RF---YKDFPP----HP--KEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVM 163 (203)
Q Consensus 99 ~~l~~------~~---~~~~~~----~~--~~~~~~~~~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~~~~~~~~~~~ 163 (203)
..++. .. .+.... .. ........+..++|++.|+ ++... .|++++|+|++|+.+.+++.
T Consensus 287 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~nvg~i~-gg~~~-----~~~~~iDiR~~p~~~~~~v~ 360 (466)
T PRK07318 287 NQLNLDGDAKAFLDFAAEYLHEDTRGEKLGIAYEDDVMGDLTMNVGVFS-FDEEK-----GGTLGLNFRYPVGTDFEKIK 360 (466)
T ss_pred HhccCchhHHHHHHHHHHhcCCCCCcccCCCcccCCCccCeEEEeeEEE-EecCc-----EEEEEEEEeCCCCCCHHHHH
Confidence 98853 10 000000 00 0000111234688999888 54321 69999999999999999999
Q ss_pred HHHHHHHHHhhhcchhccccCCCCCCCCCCCCcccccc
Q 028821 164 KRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGRQL 201 (203)
Q Consensus 164 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (203)
++|++.+++...+++.. ....+.+..+++++.+.+.
T Consensus 361 ~~i~~~~~~~~~~~~~~--~~~~p~~~~~d~~lv~~l~ 396 (466)
T PRK07318 361 AKLEKLIGVTGVELSEH--EHQKPHYVPKDDPLVKTLL 396 (466)
T ss_pred HHHHHHHHhcCeEEEEc--cCCCceeeCCCCHHHHHHH
Confidence 99999987754333311 1222334556777766553
No 51
>PRK07079 hypothetical protein; Provisional
Probab=99.83 E-value=1.4e-19 Score=154.34 Aligned_cols=187 Identities=18% Similarity=0.177 Sum_probs=130.6
Q ss_pred ccCCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCCC-----CCceeeeeeeEEEEEEEeec--CCC
Q 028821 8 KLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD-----KQPCIGTGGMIPWKLHVTGK--LFH 80 (203)
Q Consensus 8 ~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~-----~~i~~~~~g~~~~~i~~~G~--~~H 80 (203)
+..+.++|.|+|++|||+|+ .|+++++++.. ..+++|++|+.|++. ..++++++|..+++|+++|+ +.|
T Consensus 147 ~~~~~~~i~~~~~~dEE~g~---~G~~~l~~~~~-~~~~~d~~iv~e~~~~~~~~~~i~~g~kG~~~~~v~v~G~~~~~h 222 (469)
T PRK07079 147 GGRLGFNVKLLIEMGEEIGS---PGLAEVCRQHR-EALAADVLIASDGPRLSAERPTLFLGSRGAVNFRLRVNLRDGAHH 222 (469)
T ss_pred CCCCCCCEEEEEECccccCC---ccHHHHHHHhH-HhcCCCEEEEeCCCccCCCCeEEEEecceEEEEEEEEeeCCCCCC
Confidence 45788999999999999998 69999998642 224678999999864 24678999999999999998 446
Q ss_pred cCCCCCC--CCHHHHHHHHHHHHHHHHhc--------------------CCCCCCCcc---------cc------CCCCC
Q 028821 81 SGLPHKA--INPLELAMEALKVIQTRFYK--------------------DFPPHPKEQ---------VY------GFETP 123 (203)
Q Consensus 81 ss~p~~g--~NAi~~~~~~l~~l~~~~~~--------------------~~~~~~~~~---------~~------~~~~~ 123 (203)
|+ ++.| .||+..++.++..+.+.... ......... .. .....
T Consensus 223 s~-~~~g~~~nai~~l~~ai~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (469)
T PRK07079 223 SG-NWGGLLRNPGTVLAHAIASLVDARGRIQVPGLRPPPLPAAVRAALADITVGGGPGDPAIDPDWGEPGLTPAERVFGW 301 (469)
T ss_pred CC-ccccccCCHHHHHHHHHHHhCCCCCCEecCCccCCCCCHHHHHHHHhCCCchhhhccCcccccCCCCcCHHHHHhhC
Confidence 66 4444 69999999999887432100 000000000 00 00123
Q ss_pred ceEeeEEEecCCC---ccceeCCeEEEEEEeecCCCCCHHHHHHHHHHHHHHhhh-cchhccccCCCCCCCCCCCCcccc
Q 028821 124 STMKPTQWSYPGG---GINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINE-NIEKLDTRGPVSKYVLPDENIRGR 199 (203)
Q Consensus 124 ~~~~~~~i~~gg~---~~nvip~~~~~~~~iR~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 199 (203)
.++|++.|+ ||. ..|+||++|++++|+|++|+++.+++.++|++.+++... +++........+..+.+++++...
T Consensus 302 ~t~nv~~i~-gG~~~~~~NvVP~~a~~~vdiR~~P~~~~e~v~~~l~~~i~~~~~~~v~~~~~~~~~p~~~~~~~~~v~~ 380 (469)
T PRK07079 302 NTLEVLAFK-TGNPDAPVNAIPGSARAVCQLRFVVGTDWENLAPHLRAHLDAHGFPMVEVTVERGSPATRLDPDDPWVRW 380 (469)
T ss_pred CceEEEeee-cCCCCCcceEecCceEEEEEEEcCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCCceecCCCCHHHHH
Confidence 578999998 663 589999999999999999999999999999999988543 233111112223345677777654
Q ss_pred c
Q 028821 200 Q 200 (203)
Q Consensus 200 ~ 200 (203)
+
T Consensus 381 l 381 (469)
T PRK07079 381 A 381 (469)
T ss_pred H
Confidence 4
No 52
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []. This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A ....
Probab=99.82 E-value=1.5e-19 Score=124.85 Aligned_cols=110 Identities=26% Similarity=0.374 Sum_probs=92.8
Q ss_pred eeeeeeEEEEEEEeecCCCcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCceEeeEEEecCCCcccee
Q 028821 62 IGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQI 141 (203)
Q Consensus 62 ~~~~g~~~~~i~~~G~~~Hss~p~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~~nvi 141 (203)
++++|..+++|+++|+++|+|.|+.|.||+..+++++..|+....+.... ....+.+..+++++.++ +|...|+|
T Consensus 1 ~g~~G~~~~~i~~~G~~~H~s~~~~g~nai~~~~~~l~~l~~~~~~~~~~----~~~~~~~~~~~~~~~i~-gG~~~n~i 75 (111)
T PF07687_consen 1 IGHRGVIWFRITITGKSGHSSRPEKGVNAIEAAARFLNALEELEFEWAFR----PEEFFPGPPTLNIGSIE-GGTAPNVI 75 (111)
T ss_dssp EEEEEEEEEEEEEESBSEETTSGGGSBCHHHHHHHHHHHHHHTTCHBTST----HHHCTCTSEEEEEEEEE-EESSTTEE
T ss_pred CcCCCEEEEEEEEEeeccCCCCccCccCHHHHHHHHHHHHHHhhcccccc----cccccccccceeEeecc-cCCcCCEE
Confidence 57899999999999999999999999999999999999998763221100 00112235889999999 88899999
Q ss_pred CCeEEEEEEeecCCCCCHHHHHHHHHHHHHHhhhc
Q 028821 142 PGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN 176 (203)
Q Consensus 142 p~~~~~~~~iR~~~~~~~~~~~~~i~~~~~~~~~~ 176 (203)
|++|++++++|++|.++.+++++.|++.+++++.+
T Consensus 76 p~~a~~~~~~R~~p~~~~~~i~~~i~~~~~~~~~~ 110 (111)
T PF07687_consen 76 PDEATLTVDIRYPPGEDLEEIKAEIEAAVEKIAKK 110 (111)
T ss_dssp SSEEEEEEEEEESTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEECCCcchHHHHHHHHHHHHHHhhhC
Confidence 99999999999999999999999999999987653
No 53
>PRK13381 peptidase T; Provisional
Probab=99.81 E-value=3.4e-19 Score=149.22 Aligned_cols=150 Identities=15% Similarity=0.092 Sum_probs=116.0
Q ss_pred ccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCC-CCCceeeeeeeEEEEEEEeecCCC
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTA-DKQPCIGTGGMIPWKLHVTGKLFH 80 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~-~~~i~~~~~g~~~~~i~~~G~~~H 80 (203)
++|++++ .++++|.|+|++|||+|+ .|+++++.++ +.+|++++.|.. .+.+.++++|..+++|+++|+++|
T Consensus 151 ~~l~~~~-~~~g~i~~~~~~dEE~g~---~G~~~~~~~~----~~~d~~~~~~~~~~~~i~~~~~G~~~~~v~v~Gk~aH 222 (404)
T PRK13381 151 ENLTENE-VEHGDIVVAFVPDEEIGL---RGAKALDLAR----FPVDFAYTIDCCELGEVVYENFNAASAEITITGVTAH 222 (404)
T ss_pred HHHHhcC-CCCCCEEEEEEccccccc---ccHHHHHHhc----CCCCEEEEecCCCcceEEEecCcceEEEEEEEeEecC
Confidence 3455554 468899999999999987 6999998653 346777776543 345778899999999999999999
Q ss_pred cC-CCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCceEeeEEEecCCCccceeCCeEEEEEEeecCCCCCH
Q 028821 81 SG-LPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNV 159 (203)
Q Consensus 81 ss-~p~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~~~~~~~ 159 (203)
++ .|+.|.||+..+++++..|.++..+...+ . ...+++++.+. + .|++|++.+|+|++|.++.
T Consensus 223 a~~~p~~g~NAI~~a~~~i~~l~~~~~~~~~~--------~-~~~~i~v~~i~-g------~p~~~~~~~diR~~~~~~~ 286 (404)
T PRK13381 223 PMSAKGVLVNPILMANDFISHFPRQETPEHTE--------G-REGYIWVNDLQ-G------NVNKAKLKLIIRDFDLDGF 286 (404)
T ss_pred CCCCcccCcCHHHHHHHHHHhCCccCCCCCCC--------C-cccEEEEEeEE-e------CcceEEEEEEEecCCHHHH
Confidence 87 48999999999999998886542111110 0 12346777765 3 2899999999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 028821 160 TDVMKRLQEYVDDINE 175 (203)
Q Consensus 160 ~~~~~~i~~~~~~~~~ 175 (203)
+++.++|++.++++..
T Consensus 287 e~i~~~i~~~~~~~~~ 302 (404)
T PRK13381 287 EARKQFIEEVVAKINA 302 (404)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999888754
No 54
>PRK05469 peptidase T; Provisional
Probab=99.80 E-value=7.1e-19 Score=147.50 Aligned_cols=150 Identities=16% Similarity=0.069 Sum_probs=113.5
Q ss_pred ccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCC-CCCceeeeeeeEEEEEEEeecCCC
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTA-DKQPCIGTGGMIPWKLHVTGKLFH 80 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~-~~~i~~~~~g~~~~~i~~~G~~~H 80 (203)
++|++++..++++|.|+|++|||+|. |++.++.+. +..|+++..++. .+.+.++.+|..+++|+++|+++|
T Consensus 153 ~~l~~~~~~~~g~v~~~f~~dEE~g~----Ga~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~g~~~~~i~v~Gk~~H 224 (408)
T PRK05469 153 EYLIAHPEIKHGDIRVAFTPDEEIGR----GADKFDVEK----FGADFAYTVDGGPLGELEYENFNAASAKITIHGVNVH 224 (408)
T ss_pred HHHHhCCCCCCCCEEEEEecccccCC----CHHHhhhhh----cCCcEEEEecCCCcceEEeccCceeEEEEEEeeecCC
Confidence 45666666678999999999999863 998886432 234556655543 345677788999999999999999
Q ss_pred cC-CCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCceEeeEEEecCCCccceeCCeEEEEEEeecCCCCCH
Q 028821 81 SG-LPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNV 159 (203)
Q Consensus 81 ss-~p~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~~~~~~~ 159 (203)
++ .|+.|.||+..+++++..++......... ....+++++.++ | .|++|++.+|+|+.+..+.
T Consensus 225 a~~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~---------~~~~~i~~g~i~-g------gp~~~~i~~diR~~~~e~~ 288 (408)
T PRK05469 225 PGTAKGKMVNALLLAADFHAMLPADETPETTE---------GYEGFYHLTSIK-G------TVEEAELSYIIRDFDREGF 288 (408)
T ss_pred CCCCcccccCHHHHHHHHHHhCCCCCCCCCCC---------CceEEEEEEEEE-E------ccceEEEEEEEecCCHHHH
Confidence 86 58999999999999998776432111000 011345777776 4 3899999999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 028821 160 TDVMKRLQEYVDDINE 175 (203)
Q Consensus 160 ~~~~~~i~~~~~~~~~ 175 (203)
+.+.++|++.+++++.
T Consensus 289 e~i~~~i~~~~~~~~~ 304 (408)
T PRK05469 289 EARKALMQEIAKKVNA 304 (408)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998753
No 55
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=99.79 E-value=1.4e-19 Score=151.75 Aligned_cols=151 Identities=15% Similarity=0.079 Sum_probs=107.9
Q ss_pred ccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCCCCCceeeeeeeEEEEEEEeecCCCc
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~~~G~~~Hs 81 (203)
++|++++..++++|+|+|++|||+|. |++.++..+. +.++++++.++|++ .+.+...|..+++|+++|+++|+
T Consensus 155 ~~L~e~~~~~~g~I~~~ft~dEE~g~----Ga~~l~~~~~--~~~~~~~i~gep~g-~i~~~~~g~~~~~I~v~Gk~aHa 227 (410)
T TIGR01882 155 DYLINHPEIKHGTIRVAFTPDEEIGR----GAHKFDVKDF--NADFAYTVDGGPLG-ELEYETFSAAAAKITIQGNNVHP 227 (410)
T ss_pred HHHHhCCCCCCCCEEEEEECcccCCc----Ccchhhhhhc--CccEEEEeCCCCCC-eEEEccccceEEEEEEEEEecCc
Confidence 56666543568999999999999863 8888864332 22223344445444 35566679999999999999999
Q ss_pred CCC-CCCCCHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCceEeeEEEecCCCccceeCCeEEEEEEeecCCCCCHH
Q 028821 82 GLP-HKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVT 160 (203)
Q Consensus 82 s~p-~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~~~~~~~~ 160 (203)
+.+ +.+.||+..+.+++..+.... .+. .+.-+.+.++ ++ ..|.+|++|++.+|+|+++.++.+
T Consensus 228 ~~~~~~g~nAi~~a~~~~~~l~~~~----~~~----------~t~~~~g~i~-~g-~i~giPd~a~l~~diR~~~~e~~e 291 (410)
T TIGR01882 228 GTAKGKMINAAQIAIDLHNLLPEDD----RPE----------YTEGREGFFH-LL-SIDGTVEEAKLHYIIRDFEKENFQ 291 (410)
T ss_pred ccChHHHHHHHHHHHHHHHhcCCcC----CCc----------cccceeEEEE-EE-eEEEecCEEEEEEEEecCCHHHHH
Confidence 976 689999999988876543211 111 0111123343 33 466799999999999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 028821 161 DVMKRLQEYVDDINE 175 (203)
Q Consensus 161 ~~~~~i~~~~~~~~~ 175 (203)
++.++|+++++++..
T Consensus 292 ~i~~~i~~i~~~~~~ 306 (410)
T TIGR01882 292 ERKELMKRIVEKMNN 306 (410)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988754
No 56
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=99.79 E-value=2.9e-18 Score=145.12 Aligned_cols=188 Identities=16% Similarity=0.111 Sum_probs=123.4
Q ss_pred ccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhccccC--CCCCCC---EEEeeCC--------------------
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLN--KLKGGP---LYWIDTA-------------------- 56 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~--~~~~d~---~i~~e~~-------------------- 56 (203)
+.|++.+.+++++|.|+|++|||+|+ .|++++++..... ++.+|+ ++..+++
T Consensus 119 ~~l~~~~~~~~~~i~~~~~~dEE~g~---~g~~~~l~~~~~~~~~~~~d~~~~~~~~e~g~~~~~~~v~g~~~~~~~i~~ 195 (447)
T TIGR01887 119 KILKELGLKLKKKIRFIFGTDEETGW---ACIDYYFEHEEAPDIGFTPDAEFPIIYGEKGIVTLEISFKDDTEGDVVLES 195 (447)
T ss_pred HHHHHcCCCCCCcEEEEEECCcccCc---HhHHHHHHhcCCCCEEEeCCCCcceEEEecCeEEEEEEeccCCCCceeEEE
Confidence 46777777889999999999999998 6999998763211 122333 4444432
Q ss_pred -------CCC-----ceeeee-------------------eeE-----EEEEEEeecCCCcCCCCCCCCHHHHHHHHHHH
Q 028821 57 -------DKQ-----PCIGTG-------------------GMI-----PWKLHVTGKLFHSGLPHKAINPLELAMEALKV 100 (203)
Q Consensus 57 -------~~~-----i~~~~~-------------------g~~-----~~~i~~~G~~~Hss~p~~g~NAi~~~~~~l~~ 100 (203)
+.. .+++++ |.. +++|+++|+++|+|.|+.|.||+..|++++..
T Consensus 196 ~~~Ge~tn~~p~~a~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~v~G~~aHss~p~~G~NAi~~l~~~l~~ 275 (447)
T TIGR01887 196 FKAGEAFNMVPDHATAVISGKELLEVEKEKFVFFIAKELEGSFEVNDGTATITLEGKSAHGSAPEKGINAATYLALFLAQ 275 (447)
T ss_pred EeCCCcCCccCcceEEEEeccchhHHHHHHHHHhhhcCcceEEEecCCEEEEEEEeeecccCCCccCccHHHHHHHHHHh
Confidence 221 134444 666 79999999999999999999999999999998
Q ss_pred HH--HHH-------hcCCC-----CCCCcccc-CCCCCceEeeEEEecCCCccceeCCeEEEEEEeecCCCCCHHHHHHH
Q 028821 101 IQ--TRF-------YKDFP-----PHPKEQVY-GFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKR 165 (203)
Q Consensus 101 l~--~~~-------~~~~~-----~~~~~~~~-~~~~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~~~~~~~~~~~~~ 165 (203)
+. +.. ...+. ........ ...+.+++|++.|+ ++ .|+.|++++|+|++|+.+.++++++
T Consensus 276 l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~t~nvg~I~-~g-----~p~~~~~~~d~R~~p~~~~e~~~~~ 349 (447)
T TIGR01887 276 LNLAGGAKAFLQFLAEYLHEDHYGEKLGIDFHDDVSGDLTMNVGVID-YE-----NAEAGLIGLNVRYPVGNDPDTMLKN 349 (447)
T ss_pred ccCchhHHHHHHHHHHhcCCCCccccCCCcccCCCcCCcEEEEEEEE-Ee-----CCcEEEEEEEEecCCCCCHHHHHHH
Confidence 75 210 00000 00000001 11234678999998 55 4899999999999999999987777
Q ss_pred HHHHHHHhhhcchhccccCCCCCCCCCCCCcccccc
Q 028821 166 LQEYVDDINENIEKLDTRGPVSKYVLPDENIRGRQL 201 (203)
Q Consensus 166 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (203)
+.+.+... +.........+.+..++++|...+.
T Consensus 350 i~~~~~~~---~~~~~~~~~~p~~~~~~~~lv~~l~ 382 (447)
T TIGR01887 350 ELAKESGI---VEVTENGYLKPLYVPKDDPLVQTLM 382 (447)
T ss_pred HHHHhhCc---EEEEEccCCCCeEECCCCHHHHHHH
Confidence 77543321 1111111233455567788776654
No 57
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=99.78 E-value=4.2e-18 Score=148.35 Aligned_cols=162 Identities=20% Similarity=0.248 Sum_probs=120.4
Q ss_pred CccccccccCCceeEEEEEEecCCC-----CCCCCccHHHHH--------h----ccc-----cC--CC-----------
Q 028821 1 MRKLGETKLKLKSTVIAVFIASEEN-----SAITGVGVDALV--------K----DGL-----LN--KL----------- 45 (203)
Q Consensus 1 ~k~L~~~~~~~~~~v~l~~~~dEE~-----g~~~~~G~~~~~--------~----~~~-----~~--~~----------- 45 (203)
++.|++++.+++++|.|++.+|||+ ++ .|++.+. + +|. ++ ++
T Consensus 282 ~~~l~~~~~~~~~~i~vi~~~~EEg~rF~~~~---~GS~~~~G~~~~~~~~~~d~~G~~~~~~l~~~g~~~~~~~~~~~~ 358 (591)
T PRK13799 282 VKELHEQGERLPFHFEVIAFAEEEGQRFKATF---LGSGALIGDFNMELLDIKDADGISLREAIQHAGHCIDAIPKIARD 358 (591)
T ss_pred HHHHHHcCCCCCCCeEEEEecCCCccCCCccc---cchHHHhCCChHHHHhccCCCCCCHHHHHHHcCCChhhccccccC
Confidence 3578899999999999999999997 33 5777665 1 122 00 11
Q ss_pred --CCCCEEEeeCCCC----------CceeeeeeeEEEEEEEeecCCCcCC-C-CCCCCHHHHHHHHHHHHHHHHhcCCCC
Q 028821 46 --KGGPLYWIDTADK----------QPCIGTGGMIPWKLHVTGKLFHSGL-P-HKAINPLELAMEALKVIQTRFYKDFPP 111 (203)
Q Consensus 46 --~~d~~i~~e~~~~----------~i~~~~~g~~~~~i~~~G~~~Hss~-p-~~g~NAi~~~~~~l~~l~~~~~~~~~~ 111 (203)
++++.+-.|...| .++.+++|..+++|+++|+++|++. | ..+.||+..+++++..++....+ .+
T Consensus 359 ~~~~~a~~ElHIEQgp~Le~~~~~igvV~g~~G~~~~~Itv~GkaaHag~~Pm~~r~dAi~aaa~ii~~l~~~~~~--~~ 436 (591)
T PRK13799 359 PADVLGFIEVHIEQGPVLLELDIPLGIVTSIAGSARYICEFIGMASHAGTTPMDMRKDAAAAAAEIALYIEKRAAQ--DQ 436 (591)
T ss_pred CCCccEEEEEEeCCCHHHHHCCCcEEEEeeeccceEEEEEEEEECCCCCCCChhhchhHHHHHHHHHHHHHHHHHh--cC
Confidence 1123333333322 2456899999999999999999986 5 45899999999999999876432 11
Q ss_pred CCCccccCCCCCceEeeEEEecCCCccceeCCeEEEEEEeecCCCCCHHHHHHHHHHHHHHhhhc
Q 028821 112 HPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN 176 (203)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~~~~~~~~~~~~~i~~~~~~~~~~ 176 (203)
. ...++++|.|+.++++.|+||++|++.+|+|+++.++.+.+.+++++.+++++..
T Consensus 437 ~---------~~~v~tVG~I~~~~ga~NvIP~~a~~~~DiR~~~~e~~e~l~~~i~~~i~~ia~~ 492 (591)
T PRK13799 437 H---------ASLVATMGQLNVPSGSTNVIPGRCQFSLDIRAATDEIRDAAVADILAEIAAIAAR 492 (591)
T ss_pred C---------CCcEEEEEEEEecCCCCceECCEEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1246788999844568999999999999999999999999888888888877654
No 58
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=99.78 E-value=1.8e-18 Score=147.44 Aligned_cols=143 Identities=20% Similarity=0.253 Sum_probs=111.9
Q ss_pred ccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCCC-CCceeee----------------
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD-KQPCIGT---------------- 64 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~-~~i~~~~---------------- 64 (203)
.+|++.+. .+++|.++|++|||+|+ .|++++.. .. .++|++|++||+. +.+++++
T Consensus 125 ~~l~~~~~-~~~~i~~l~t~dEE~G~---~ga~~l~~-~~---~~~~~~i~~e~~~~g~l~~g~~G~~~~~~~~~~~r~~ 196 (485)
T PRK15026 125 AVLADENV-VHGPLEVLLTMTEEAGM---DGAFGLQS-NW---LQADILINTDSEEEGEIYMGCAGGIDFTSNLHLDREA 196 (485)
T ss_pred HHHHhCCC-CCCCEEEEEEcccccCc---HhHHHhhh-cc---CCcCEEEEeCCCCCCeEEEeCCCcceEEEEEEEEEEe
Confidence 34555554 48899999999999998 69999864 22 3578999999974 5565444
Q ss_pred --eeeEEEEEEEee-cCCCcC-CCCCCC-CHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCceEeeEEEecCCCccc
Q 028821 65 --GGMIPWKLHVTG-KLFHSG-LPHKAI-NPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGIN 139 (203)
Q Consensus 65 --~g~~~~~i~~~G-~~~Hss-~p~~g~-NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~~n 139 (203)
+|...++|+++| ++|||+ .|+.|+ ||+..|++++..+.. ..+++++.|+ ||+..|
T Consensus 197 ~~~g~~~~~i~v~Gl~ggHsG~~i~~g~~nAi~~la~~l~~~~~-------------------~~~~~v~~i~-GG~~~N 256 (485)
T PRK15026 197 VPAGFETFKLTLKGLKGGHSGGEIHVGLGNANKLLVRFLAGHAE-------------------ELDLRLIDFN-GGTLRN 256 (485)
T ss_pred cCCCceEEEEEEECCCCcCChHHHCCCCccHHHHHHHHHHHhHh-------------------hCCeEEEEEe-CCCccC
Confidence 466789999999 999999 699998 999999999987431 1457899999 999999
Q ss_pred eeCCeEEEEEEeecCCCCCHHHHHHHHHHHHHH
Q 028821 140 QIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDD 172 (203)
Q Consensus 140 vip~~~~~~~~iR~~~~~~~~~~~~~i~~~~~~ 172 (203)
+||+.|++.+++|.......+.+.+.+.+.+++
T Consensus 257 aIp~~a~a~i~~~~~~~~~~~~~~~~~~~~~~~ 289 (485)
T PRK15026 257 AIPREAFATIAVAADKVDALKSLVNTYQEILKN 289 (485)
T ss_pred CCCCCcEEEEEEChhHHHHHHHHHHHHHHHHHH
Confidence 999999999999987655555555555554443
No 59
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=99.78 E-value=4.9e-18 Score=148.04 Aligned_cols=160 Identities=21% Similarity=0.249 Sum_probs=118.6
Q ss_pred CccccccccCCceeEEEEEEecCCCC-----CCCCccHHHH--------Hhc----ccc-------CCC-----------
Q 028821 1 MRKLGETKLKLKSTVIAVFIASEENS-----AITGVGVDAL--------VKD----GLL-------NKL----------- 45 (203)
Q Consensus 1 ~k~L~~~~~~~~~~v~l~~~~dEE~g-----~~~~~G~~~~--------~~~----~~~-------~~~----------- 45 (203)
++.|++++..++++|.|++.+|||++ + .|++.+ ++. |.- .++
T Consensus 282 ~~~l~~~~~~~~~~i~vv~~~~EEg~rF~~~~---~GS~~~~G~~~~~~~~~~d~~g~~~~~al~~~g~~~~~~~~~~~~ 358 (591)
T PRK13590 282 VRELHRQGRRLPFGLEVVGFAEEEGQRYKATF---LGSGALIGDFDPAWLDQKDADGITMREAMQHAGLCIDDIPKLRRD 358 (591)
T ss_pred HHHHHHcCCCCCCCeEEEEecCCccccCCccc---cchHHHhCCChHHHHhccCCCCCCHHHHHHHcCCChhhccccccC
Confidence 36788899888899999999999973 3 466642 221 110 011
Q ss_pred --CCCCEEEe--eCC--------CCCceeeeeeeEEEEEEEeecCCCcCC-CCC-CCCHHHHHHHHHHHHHHHHhcCCCC
Q 028821 46 --KGGPLYWI--DTA--------DKQPCIGTGGMIPWKLHVTGKLFHSGL-PHK-AINPLELAMEALKVIQTRFYKDFPP 111 (203)
Q Consensus 46 --~~d~~i~~--e~~--------~~~i~~~~~g~~~~~i~~~G~~~Hss~-p~~-g~NAi~~~~~~l~~l~~~~~~~~~~ 111 (203)
++++.+-. |++ ...++++++|..+++|+++|+++|+|. |.. +.||+..+++++..++..... .+
T Consensus 359 ~~~~~a~~ElHiEqg~~Le~~~~~~gvV~~~~G~~~~~v~v~GkaaHag~~P~~~r~dAi~aaa~~i~~l~~~~~~--~~ 436 (591)
T PRK13590 359 PARYLGFVEVHIEQGPVLNELDLPLGIVTSINGSVRYVGEMIGMASHAGTTPMDRRRDAAAAVAELALYVEQRAAQ--DG 436 (591)
T ss_pred CCCccEEEEEEeCCCHHHHHCCCceEEEeeeeccEEEEEEEEeECCCCCCCCchhcccHHHHHHHHHHHHHHHHhc--CC
Confidence 11122323 433 123567899999999999999999996 544 689999999999998875321 11
Q ss_pred CCCccccCCCCCceEeeEEEecCCCccceeCCeEEEEEEeecCCCCCHHHHHHHHHHHHHHhhhc
Q 028821 112 HPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN 176 (203)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~~~~~~~~~~~~~i~~~~~~~~~~ 176 (203)
..++++|.+..+|+..|+||++|++++|+|+++.++.+.+.++|++.++++...
T Consensus 437 -----------~~v~tVG~i~~~Gg~~NVIP~~a~~~iDiR~~~~e~~e~v~~~i~~~i~~ia~~ 490 (591)
T PRK13590 437 -----------DSVGTVGMLEVPGGSINVVPGRCRFSLDIRAPTDAQRDAMVADVLAELEAICER 490 (591)
T ss_pred -----------CcEEEEEEEEECCCCCceECCEEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 245688998754678999999999999999999999999999999888887654
No 60
>PRK06156 hypothetical protein; Provisional
Probab=99.77 E-value=5.4e-18 Score=146.05 Aligned_cols=190 Identities=14% Similarity=0.088 Sum_probs=123.1
Q ss_pred ccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhccccCC--CCCCC---EEEeeCCCCC----------------c
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNK--LKGGP---LYWIDTADKQ----------------P 60 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~--~~~d~---~i~~e~~~~~----------------i 60 (203)
++|++.+.+++++|.|+|++|||.|+ .|+++++......+ +.+|. +++.|++... +
T Consensus 167 ~~l~~~~~~~~~~i~~~~~~dEE~g~---~G~~~~~~~~~~~~~~~~~D~~~~~~~~E~~~~~~~i~~~~~~~~~~~~~l 243 (520)
T PRK06156 167 KAIKDSGLPLARRIELLVYTTEETDG---DPLKYYLERYTPPDYNITLDAEYPVVTAEKGWGTIMATFPKRAADGKGAEI 243 (520)
T ss_pred HHHHHcCCCCCceEEEEEecccccCc---hhHHHHHHhcCCCCeEEeeCCCCceEEEecceEEEEEEecCcCCCCCceeE
Confidence 45677777788999999999999998 69999997643211 11121 3455553100 0
Q ss_pred ---------------------------------------eeeeeeeE---------EEEEEEeecCCCcCCCCCCCCHHH
Q 028821 61 ---------------------------------------CIGTGGMI---------PWKLHVTGKLFHSGLPHKAINPLE 92 (203)
Q Consensus 61 ---------------------------------------~~~~~g~~---------~~~i~~~G~~~Hss~p~~g~NAi~ 92 (203)
..+++|.. +++|+++|+++|+|.|+.|.|||.
T Consensus 244 ~~~~gG~~~n~ip~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~I~v~Gk~aHsS~P~~G~NAI~ 323 (520)
T PRK06156 244 VAMTGGAFANQIPQTAVATLSGGDPAALAAALQAAAAAQVKRHGGGFSIDFKRDGKDVTITVTGKSAHSSTPESGVNPVT 323 (520)
T ss_pred EEEEcCCcCCCCCCccEEEEecCCHHHHHHHHHHHHHHHHhhcccCceEEEEEcCCeEEEEEEeEECCCCCCCCCccHHH
Confidence 01122444 899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc--------CC----C-----CCCC-ccccCCCCCceEeeEEEecCCCccceeCCeEEEEEEeecC
Q 028821 93 LAMEALKVIQTRFYK--------DF----P-----PHPK-EQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLT 154 (203)
Q Consensus 93 ~~~~~l~~l~~~~~~--------~~----~-----~~~~-~~~~~~~~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~~ 154 (203)
.+++++..+++.... .+ . .... .....+.++.+++++.|. +|. +.|++.+|+|++
T Consensus 324 ~aa~ii~~L~~~l~~~~~~~~~~~i~~~~~~~~~g~~~g~~~~~~~~g~~t~~~~~I~-gg~------~~~~l~iDiR~~ 396 (520)
T PRK06156 324 RLALFLQSLDGDLPHNHAADAARYINDLVGLDYLGEKFGVAYKDDFMGPLTLSPTVVG-QDD------KGTEVTVNLRRP 396 (520)
T ss_pred HHHHHHHhccccccchhHHHHHHHHHHhhCCCCccCcCCccccCCCccCcEEeeeEEE-EeC------CeEEEEEEeeCC
Confidence 999999998641100 00 0 0000 001122234566777776 433 689999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhhc--ch-hccccCCCCCCCCCCCCcccccc
Q 028821 155 PFYNVTDVMKRLQEYVDDINEN--IE-KLDTRGPVSKYVLPDENIRGRQL 201 (203)
Q Consensus 155 ~~~~~~~~~~~i~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~ 201 (203)
|+++.+++.++|++.++++... ++ .+......+.+..+++++...+.
T Consensus 397 p~~~~eev~~~I~~~i~~~~~~~gv~ve~~~~~~~p~~~~~d~~lv~~l~ 446 (520)
T PRK06156 397 VGKTPELLKGEIADALAAWQAKHQVALDIDYYWGEPMVRDPKGPWLKTLL 446 (520)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhcCceEEEeecCCCceeeCCCCHHHHHHH
Confidence 9999999999999998875432 22 12112223445567777766553
No 61
>PRK07205 hypothetical protein; Provisional
Probab=99.77 E-value=1.3e-17 Score=141.24 Aligned_cols=187 Identities=12% Similarity=0.087 Sum_probs=119.1
Q ss_pred ccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhcccc--CCCCCCC--------------EEEeeCCCC-------
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLL--NKLKGGP--------------LYWIDTADK------- 58 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~--~~~~~d~--------------~i~~e~~~~------- 58 (203)
++|++.+..++++|.|+|++|||+|+ .|++++++.... .++.+|. .+..+|++.
T Consensus 129 ~~l~~~~~~~~~~i~l~~~~dEE~g~---~g~~~~~~~~~~~~~~~~~~~~~~v~~~ekG~~~~~i~~~~~~~~~~~~g~ 205 (444)
T PRK07205 129 KALLDAGVQFNKRIRFIFGTDEETLW---RCMNRYNEVEEQATMGFAPDSSFPLTYAEKGLLQAKLVGPGSDQLELEVGQ 205 (444)
T ss_pred HHHHHcCCCCCCcEEEEEECCcccCc---ccHHHHHhCCCCCCeeECCCCCCceEEEEeceEEEEEEeCCccceEEecCC
Confidence 46777777888999999999999998 699999874221 1223332 334454422
Q ss_pred --Cc--eee-eeee------------------EEEEEEEeecCCCcCCCCCCCCHHHHHHHHHHHHHHH-----HhcCCC
Q 028821 59 --QP--CIG-TGGM------------------IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTR-----FYKDFP 110 (203)
Q Consensus 59 --~i--~~~-~~g~------------------~~~~i~~~G~~~Hss~p~~g~NAi~~~~~~l~~l~~~-----~~~~~~ 110 (203)
.. ... ++|. .+++++++|+++|+|.|+.|.|||..+++++..++.. ..+.+.
T Consensus 206 ~~~~~~~~~~~~g~~~~~l~~~~~~~g~~~~~~~~~v~v~G~~~Hss~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~~ 285 (444)
T PRK07205 206 AFNVVPAKASYQGPKLEAVKKELDKLGFEYVVKENEVTVLGKSVHAKDAPQGINAVIRLAKALVVLEPHPALDFLANVIG 285 (444)
T ss_pred cccccCceeEEEecCHHHHHHHHHhcCceEeecCcEEEEEeEEcccCCCccCcCHHHHHHHHHHhccHHHHHHHHHHhcC
Confidence 00 011 2221 3349999999999999999999999999999887542 111110
Q ss_pred CC------CCccccCCCCCceEeeEEEecCCCccceeCCeEEEEEEeecCCCCCHHHHHHHHHHHHHHhhhcchhccccC
Q 028821 111 PH------PKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRG 184 (203)
Q Consensus 111 ~~------~~~~~~~~~~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 184 (203)
.. .........+..++|++. .|++|++|++.+|+|++|+++.+++.+.|++.+++...++.... .
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~t~nvg~-------~nvvP~~a~~~ld~R~~p~~~~e~v~~~i~~~~~~~~v~~~~~~--~ 356 (444)
T PRK07205 286 EDATGLNIFGDIEDEPSGKLSFNIAG-------LTITKEKSEIRIDIRIPVLADKEKLVQQLSQKAQEYGLTYEEFD--Y 356 (444)
T ss_pred CCCccccCCccccCCCcCCceEEeEE-------EEEECCEEEEEEEEeCCCCCCHHHHHHHHHHHHHHcCcEEEEec--C
Confidence 00 000001112235556654 37999999999999999999999999999998876432222111 1
Q ss_pred CCCCCCCCCCCccccc
Q 028821 185 PVSKYVLPDENIRGRQ 200 (203)
Q Consensus 185 ~~~~~~~~~~~~~~~~ 200 (203)
..+..+.++++|...+
T Consensus 357 ~~p~~~~~~~~lv~~l 372 (444)
T PRK07205 357 LAPLYVPLDSELVSTL 372 (444)
T ss_pred CCceeeCCCcHHHHHH
Confidence 2222345667766544
No 62
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=99.73 E-value=7e-17 Score=137.95 Aligned_cols=118 Identities=22% Similarity=0.232 Sum_probs=81.5
Q ss_pred CCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeC-----------CCCCc------eee--eeeeEEE
Q 028821 10 KLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDT-----------ADKQP------CIG--TGGMIPW 70 (203)
Q Consensus 10 ~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~-----------~~~~i------~~~--~~g~~~~ 70 (203)
.++++|.|+|++|||+|+ .|++++..... ..+++++.++ +...+ .+. ++|..++
T Consensus 126 ~~~~~i~~~~~~dEE~g~---~Gs~~l~~~~~----~~~~~~~~d~~~~~~~~~g~~~~~~~~~~~e~~~e~~~kG~~~~ 198 (477)
T TIGR01893 126 LKHPPLELLFTVDEETGM---DGALGLDENWL----SGKILINIDSEEEGEFIVGCAGGRNVDITFPVKYEKFTKNEEGY 198 (477)
T ss_pred CCCCCEEEEEEeccccCc---hhhhhcChhhc----CCcEEEEecCCCCCeEEEECCCCeeEEEEEEEEEEecCCCceEE
Confidence 356799999999999987 69999975432 2234444443 22111 111 4789999
Q ss_pred EEEEee-cCCCcC-CCCCC-CCHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCceEeeEEEecCCCccceeCCeEEE
Q 028821 71 KLHVTG-KLFHSG-LPHKA-INPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV 147 (203)
Q Consensus 71 ~i~~~G-~~~Hss-~p~~g-~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~~nvip~~~~~ 147 (203)
+|+++| +++||+ .|..+ .||+..+++++..+.... .++++.+. ||...|+||++|++
T Consensus 199 ~i~~~G~~~~Hsg~~p~~~r~nAi~~aa~~i~~l~~~~-------------------~~~v~~~~-gg~~~N~ip~~~~~ 258 (477)
T TIGR01893 199 QISLKGLKGGHSGADIHKGRANANKLMARVLNELKENL-------------------NFRLSDIK-GGSKRNAIPREAKA 258 (477)
T ss_pred EEEEeCcCCCcCccccCCCCcCHHHHHHHHHHhhhhcC-------------------CeEEEEEe-CCCcccccCCceEE
Confidence 999999 999997 58787 599999999998876531 02445555 66666777766666
Q ss_pred EEEeecC
Q 028821 148 SGDVRLT 154 (203)
Q Consensus 148 ~~~iR~~ 154 (203)
++|+|..
T Consensus 259 ~~diR~~ 265 (477)
T TIGR01893 259 LIAIDEN 265 (477)
T ss_pred EEEEChh
Confidence 6665533
No 63
>PRK08554 peptidase; Reviewed
Probab=99.61 E-value=4.2e-15 Score=125.64 Aligned_cols=190 Identities=16% Similarity=0.097 Sum_probs=110.9
Q ss_pred ccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCCCCCceeeeeeeEEEEEE--------
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLH-------- 73 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~-------- 73 (203)
++|++. .++++|+|+|++|||+|+ .+..++++........+|++|++||+...+++.+++..+++++
T Consensus 116 ~~l~~~--~~~~~i~l~~~~dEE~g~---~~~~~~~~~~~~~~~~~~~~iv~Ept~~~~~~~~~kg~~~~~~~~~~~~~~ 190 (438)
T PRK08554 116 KELSKE--PLNGKVIFAFTGDEEIGG---AMAMHIAEKLREEGKLPKYMINADGIGMKPIIRRRKGFGVTIRVPSEKVKV 190 (438)
T ss_pred HHHHhc--CCCCCEEEEEEcccccCc---cccHHHHHHHHhcCCCCCEEEEeCCCCCcchhhcCCceEEEEEeccccccc
Confidence 445543 367899999999999987 4555766542222346789999999887655433333334444
Q ss_pred ------------Eeec-CCCcCCCCCCCC--HHHHHHHHHHHHHHHHhcCCCCCCCccccCCC-CCceEeeEEEecCCC-
Q 028821 74 ------------VTGK-LFHSGLPHKAIN--PLELAMEALKVIQTRFYKDFPPHPKEQVYGFE-TPSTMKPTQWSYPGG- 136 (203)
Q Consensus 74 ------------~~G~-~~Hss~p~~g~N--Ai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~gg~- 136 (203)
+.|. .+|++.|..|.| |+..+++++..+...... +... ....+.. ...++++.... +|.
T Consensus 191 ~g~~~~~~~~~~~~~~~~~Ha~~~~~g~~~~~i~~~~~~~~~~~~~~~~-~~g~--~~~~~~~~~~~~~~~~~p~-~g~n 266 (438)
T PRK08554 191 KGKLREQTFEIRTPVVETRHAAYFLPGVDTHPLIAASHFLRESNVLAVS-LEGK--FLKGNVVPGEVTLTYLEPG-EGEE 266 (438)
T ss_pred ccceeeeeeceeecccCccccccccCCcCchHHHHHHHHHhhcCceEEE-Eeee--eeecCcccceeEEEEecCC-CCcc
Confidence 4444 499998766665 477777766554321100 0000 0000000 00111111111 111
Q ss_pred ----------------------------------cccee---CCeEEEEEEeecCCCCCHHHHHHHHHHHHHHhhhc--c
Q 028821 137 ----------------------------------GINQI---PGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN--I 177 (203)
Q Consensus 137 ----------------------------------~~nvi---p~~~~~~~~iR~~~~~~~~~~~~~i~~~~~~~~~~--~ 177 (203)
..|++ |+.|++++|+|+.+ .+.+++.++|++.+++.... +
T Consensus 267 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~n~~~i~~g~a~~~~DiR~~~-~~~e~v~~~i~~~~~~~~~~~~~ 345 (438)
T PRK08554 267 VEVDLGLTRLLKAIVPLVRAPIKAEKYSDYGVSITPNVYSFAEGKHVLKLDIRAMS-YSKEDIERTLKEVLEFNLPEAEV 345 (438)
T ss_pred ccccccHHHHHHHHHHHHHHhhccccccccceeeccceEEecCCeEEEEEEEEecC-CCHHHHHHHHHHHhhccCCCceE
Confidence 34555 99999999999987 68899999999988764222 2
Q ss_pred hhccccCCCCCCCCCCCCcccccc
Q 028821 178 EKLDTRGPVSKYVLPDENIRGRQL 201 (203)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~ 201 (203)
+........+.++.+++++.+.+.
T Consensus 346 ~~~~~~~~~~~~~~~~~~lv~~~~ 369 (438)
T PRK08554 346 EIRTNEKAGYLFTPPDEEIVKVAL 369 (438)
T ss_pred EEEeccCCCCcCCCCChHHHHHHH
Confidence 311112335677778888877653
No 64
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=98.92 E-value=2.2e-09 Score=88.03 Aligned_cols=159 Identities=16% Similarity=0.161 Sum_probs=110.4
Q ss_pred ccccccCCceeEEEEEEecCCCCCCCCccHHHHHhc--cccCCCCC--CCEEEeeCCC-------CC-ceeeeeeeEEEE
Q 028821 4 LGETKLKLKSTVIAVFIASEENSAITGVGVDALVKD--GLLNKLKG--GPLYWIDTAD-------KQ-PCIGTGGMIPWK 71 (203)
Q Consensus 4 L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~--~~~~~~~~--d~~i~~e~~~-------~~-i~~~~~g~~~~~ 71 (203)
+++. -..+|||.|+.+||||.-+ .|++..+.. +..++++. -++|..|++. ++ +..|..|..-.-
T Consensus 155 fa~~-~~~~GNlLf~a~pdEE~~s---~G~r~a~~~L~~L~kk~~l~~~~~IN~D~~~~~~dGd~~ryvYtGtiGKLLp~ 230 (553)
T COG4187 155 FAAR-TDRQGNLLFMAVPDEEVES---RGMREARPALPGLKKKFDLEYTAAINLDVTSDQGDGDQGRYVYTGTIGKLLPF 230 (553)
T ss_pred HhhC-CCCCCcEEEEeccchhhhc---ccHHHHHHHHHHHHHhhCceEEEEeccccccCCCCCccceEEEeccchhhcce
Confidence 3444 3678999999999999988 699888754 22233333 3566666653 22 345899999999
Q ss_pred EEEeecCCCcCCCCCCCCHHHHHHHHHHHHHHH--HhcCCCCCCCccccCCCCCceEeeEEEecCCCccce-eCCeEEEE
Q 028821 72 LHVTGKLFHSGLPHKAINPLELAMEALKVIQTR--FYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQ-IPGECTVS 148 (203)
Q Consensus 72 i~~~G~~~Hss~p~~g~NAi~~~~~~l~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~~nv-ip~~~~~~ 148 (203)
+-+.|...|.+.|..|+||-..++++...|+-. +.++.+ ++-..+|+.+.... --+.+|| .|.++.++
T Consensus 231 f~vvG~etHvG~~f~Gvnan~maSei~~~le~N~~l~dr~~------Ge~t~PPs~L~qkD---lKe~Y~VqTp~~a~~~ 301 (553)
T COG4187 231 FFVVGCETHVGYPFEGVNANFMASEITRRLELNADLADRVD------GEITPPPSCLEQKD---LKESYNVQTPERAWLY 301 (553)
T ss_pred eEEEeeccccCCcccCCCHHHHHHHHHHHhhcChhhhhhhC------CeeCCCcHhhhhhh---hhhhccccCcchhhhh
Confidence 999999999999999999999999999987532 111111 11122233332222 3456666 79999999
Q ss_pred EEeecCCCCCHHHHHHHHHHHHHHhhhc
Q 028821 149 GDVRLTPFYNVTDVMKRLQEYVDDINEN 176 (203)
Q Consensus 149 ~~iR~~~~~~~~~~~~~i~~~~~~~~~~ 176 (203)
+|+-+. ..+.+++.+++++.+++.+.+
T Consensus 302 fN~l~h-~~ta~~~~d~l~~~a~~A~~e 328 (553)
T COG4187 302 FNWLYH-SRTAKELFDRLKEEAETAAEE 328 (553)
T ss_pred heehhh-cCCHHHHHHHHHHHHHHHHHH
Confidence 998655 477888888888777766554
No 65
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=98.78 E-value=4.5e-09 Score=87.45 Aligned_cols=146 Identities=14% Similarity=0.095 Sum_probs=113.3
Q ss_pred cCCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCC-CCCceeeeeeeEEEEEEEeecCCCcCC-CCC
Q 028821 9 LKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTA-DKQPCIGTGGMIPWKLHVTGKLFHSGL-PHK 86 (203)
Q Consensus 9 ~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~-~~~i~~~~~g~~~~~i~~~G~~~Hss~-p~~ 86 (203)
..++++|++.|++|||.|+ .|+.++.-. ++..|+.+..+++ .+.+.+...+...+++++.|+.+|++. +..
T Consensus 165 ~i~h~~i~~g~s~~Ee~g~---rg~~~~~~a----~f~a~~ay~iDGg~~g~i~~ea~~~~~~~~~~~g~~~h~~~a~~~ 237 (414)
T COG2195 165 EIPHGGIRGGFSPDEEIGG---RGAANKDVA----RFLADFAYTLDGGPVGEIPREAFNAAAVRATIVGPNVHPGSAKGK 237 (414)
T ss_pred cccccCeEEEecchHHhhh---hhhhhccHH----hhhcceeEecCCCccCeeeeeccchheeeeeeeccCcCccchHHH
Confidence 5678999999999999997 688877643 4566788888754 456778889999999999999999985 677
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCCccccCCCCCceEeeEEEecCCCccceeCCeEEEEEEeecCCCCCHHHHHHHH
Q 028821 87 AINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRL 166 (203)
Q Consensus 87 g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~~nvip~~~~~~~~iR~~~~~~~~~~~~~i 166 (203)
..||+..+.++...+... ..+. .++.+-|... ++...|.+.+++...+.+|...+..+......+
T Consensus 238 ~i~a~~~a~e~~~~~~~~---~~~e-----------~t~~~~Gv~~-~~~~~~~V~~~s~~~~~iR~~d~~~~~s~~~~~ 302 (414)
T COG2195 238 MINALLLAAEFILELPLE---EVPE-----------LTEGPEGVYH-LGDSTNSVEETSLNLAIIRDFDNLLFRARKDSM 302 (414)
T ss_pred HhhHHHhhhhhhhcCCcc---cccc-----------cccccceEEe-ccccccchhhhhhhhhhhhhcchhHHHHhHHHH
Confidence 889999888888765422 1111 1334556665 788889999999999999999988888878778
Q ss_pred HHHHHHhhhc
Q 028821 167 QEYVDDINEN 176 (203)
Q Consensus 167 ~~~~~~~~~~ 176 (203)
++.+++...+
T Consensus 303 ~~~~~~~~~~ 312 (414)
T COG2195 303 KDVVEEMAAS 312 (414)
T ss_pred HHHHHHHHHH
Confidence 7777776654
No 66
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism]
Probab=98.73 E-value=1.1e-07 Score=77.56 Aligned_cols=169 Identities=21% Similarity=0.347 Sum_probs=112.0
Q ss_pred CccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhc---cccCCCCCCCEEEeeCCC---CCce--eeeeeeEEEEE
Q 028821 1 MRKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKD---GLLNKLKGGPLYWIDTAD---KQPC--IGTGGMIPWKL 72 (203)
Q Consensus 1 ~k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~---~~~~~~~~d~~i~~e~~~---~~i~--~~~~g~~~~~i 72 (203)
|+++.+.+..++-||.|+|-..||+|+ .|...+++. .++.+ .|++.+.+... ..+| +|-+|...|.|
T Consensus 144 v~a~~~~g~~lpvnv~f~~EgmEEsgS---~~L~~l~~~~kD~~~~~--vD~vciSdnyWlg~kkPcltyGlRG~~yf~i 218 (473)
T KOG2276|consen 144 VKALQQLGIDLPVNVVFVFEGMEESGS---EGLDELIEKEKDKFFKD--VDFVCISDNYWLGTKKPCLTYGLRGVIYFQI 218 (473)
T ss_pred HHHHHHhCccccceEEEEEEechhccC---ccHHHHHHHHhhhhhcc--CCEEEeeCceeccCCCcccccccccceeEEE
Confidence 467888999999999999999999999 588888764 23333 45666655432 2344 68899999999
Q ss_pred EEee--cCCCcCCCCCC--CCHHHHHHHHHHHHHHHH--------hcCCCCCCC---------------------ccccC
Q 028821 73 HVTG--KLFHSGLPHKA--INPLELAMEALKVIQTRF--------YKDFPPHPK---------------------EQVYG 119 (203)
Q Consensus 73 ~~~G--~~~Hss~p~~g--~NAi~~~~~~l~~l~~~~--------~~~~~~~~~---------------------~~~~~ 119 (203)
++.| +-.||+.- .| .-|+..|..++..|.+.- .+.+.|.-+ .....
T Consensus 219 ~v~g~~~DlHSGvf-GG~~hE~m~dL~~~ms~Lv~~~~~Ilipgiy~~vaplteeE~~~y~~I~f~~~e~~~~tg~~~l~ 297 (473)
T KOG2276|consen 219 EVEGPSKDLHSGVF-GGVVHEAMNDLVLVMSSLVDIQGRILIPGIYEDVAPLTEEEDSIYDDIDFDVEEFKEATGSQMLP 297 (473)
T ss_pred EEeecccccccccc-cchhHHHHHHHHHHHHHhcCcCCcEeccchhhhccCCChHHHhhhhcceeeHhhhhccccccccc
Confidence 9999 67899853 22 345555566665553210 011111100 00000
Q ss_pred CC---------C-CceEeeE----EEecCCCccceeCCeEEEEEEeecCCCCCHHHHHHHHHHHHHHhhhc
Q 028821 120 FE---------T-PSTMKPT----QWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN 176 (203)
Q Consensus 120 ~~---------~-~~~~~~~----~i~~gg~~~nvip~~~~~~~~iR~~~~~~~~~~~~~i~~~~~~~~~~ 176 (203)
+. . ..++.+. .+. ++++..|||.+....+.+|+.|+++.+.+.+.+.+.+++.-.+
T Consensus 298 ~~~k~~~l~~rWryPSLsihgIeGaFs-~pG~kTVIP~kVigkfSiRlVP~md~e~verlv~~yl~~~f~~ 367 (473)
T KOG2276|consen 298 TDDKKRILMHRWRYPSLSIHGIEGAFS-GPGAKTVIPAKVVGKFSIRLVPNMDPEQVERLVTRYLEKVFAE 367 (473)
T ss_pred cCchHHHhhhhcccCccceecccceee-CCCceEEeehhheeeeEEEecCCCCHHHHHHHHHHHHHHHHHh
Confidence 00 0 0122333 344 6678899999999999999999999999999888888876543
No 67
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=97.87 E-value=5e-06 Score=62.15 Aligned_cols=56 Identities=21% Similarity=0.305 Sum_probs=45.7
Q ss_pred ccccccccCCceeEEEEEEecCCCCCCCCc-cHHHHHhccccCCCCCCCEEEeeCCCCCc
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAITGV-GVDALVKDGLLNKLKGGPLYWIDTADKQP 60 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~-G~~~~~~~~~~~~~~~d~~i~~e~~~~~i 60 (203)
+.|++.+.+++++|.|+|++|||+|+ . |++.+++.+....+++|++++.|++....
T Consensus 49 ~~l~~~~~~~~~~i~~~~~~~EE~g~---~~g~~~l~~~~~~~~~~~~~~~~~e~~~~~~ 105 (189)
T PF01546_consen 49 KALKESGDDLPGNIIFLFTPDEEIGS---IGGAKHLLEEGAFFGLHPDYVIIGEPTGKGG 105 (189)
T ss_dssp HHHHHTTTTCSSEEEEEEESTCCGTS---TTHHHHHHHHCEEEEEEESEEEECECETTSE
T ss_pred HHHHhccccccccccccccccccCCC---cchhhhhhhhccccccccccccccccccccc
Confidence 45666778999999999999999998 5 99999998654455678888888877655
No 68
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=95.84 E-value=0.018 Score=49.74 Aligned_cols=70 Identities=6% Similarity=-0.131 Sum_probs=51.8
Q ss_pred ceEeeEEEecCCCccceeCCeEEEEEEeecCCCCCHHHHHHHHHHHHHHhhhcchhccccCCCCCCCCCCCCccccccc
Q 028821 124 STMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGRQLK 202 (203)
Q Consensus 124 ~~~~~~~i~~gg~~~nvip~~~~~~~~iR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (203)
+++|++.++ ...+++++.+++|++++.+.+++.+++++..+....+++.. ...++-+..++++|++++++
T Consensus 344 ~S~Nlg~v~-------~~~~~~~i~~~~Rs~~~~~~~~i~~~i~~~~~~~g~~~~~~--~~~p~w~~~~ds~lv~~l~~ 413 (485)
T PRK15026 344 TSLNVGVVT-------MTDNNVEIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEAK--GAYPGWQPDANSPVMHLVRE 413 (485)
T ss_pred eeeEEEEEE-------EeCCEEEEEEEecCCCchHHHHHHHHHHHHHHHcCcEEEEe--CCCCCCCCCCCCHHHHHHHH
Confidence 455666665 56678999999999999999999999999876655444422 33445566788999887653
No 69
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=93.65 E-value=0.072 Score=44.09 Aligned_cols=40 Identities=23% Similarity=0.240 Sum_probs=32.9
Q ss_pred CCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCCC
Q 028821 10 KLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD 57 (203)
Q Consensus 10 ~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~ 57 (203)
++..+|+++|++.||.|. .||+.... .++||.+|..|.+.
T Consensus 197 ~~~~~l~~~~tvqEEvG~---rGA~~aa~-----~i~pD~aI~vDv~~ 236 (350)
T TIGR03107 197 ELPNTLIAGANVQEEVGL---RGAHVSTT-----KFNPDIFFAVDCSP 236 (350)
T ss_pred CCCceEEEEEEChhhcCc---hhhhhHHh-----hCCCCEEEEEecCC
Confidence 467899999999999997 69887643 36789999988764
No 70
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=93.64 E-value=0.039 Score=40.80 Aligned_cols=52 Identities=27% Similarity=0.247 Sum_probs=37.1
Q ss_pred ccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCC
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTA 56 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~ 56 (203)
+.|++.+.+++++|+|+|..+||.|. .|++++++.......+..++|..|..
T Consensus 39 r~l~~~~~~~~~~i~fv~~~~EE~gl---~GS~~~~~~~~~~~~~~~~~inlD~~ 90 (179)
T PF04389_consen 39 RVLKELKPQPKRTIRFVFFDGEEQGL---LGSRAFVEHDHEELDNIAAVINLDMI 90 (179)
T ss_dssp HHHHHSTHSSSEEEEEEEESSGGGTS---HHHHHHHHHHHCHHHHEEEEEEECSS
T ss_pred HHHHHhhcccCccEEEEEecccccCc---cchHHHHHhhhcccccceeEEecccc
Confidence 45677667888999999999999998 79999997311111122367777753
No 71
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=93.32 E-value=0.052 Score=43.81 Aligned_cols=45 Identities=27% Similarity=0.282 Sum_probs=32.8
Q ss_pred ccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCC
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTA 56 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~ 56 (203)
+.|++. ....+|+|+|++.||.|. .|++..... ++||.+|..|.+
T Consensus 147 ~~l~~~--~~~~~v~~v~tvqEEvG~---rGA~~aa~~-----i~PD~ai~vD~~ 191 (292)
T PF05343_consen 147 RELKEK--ELDVDVYFVFTVQEEVGL---RGAKTAAFR-----IKPDIAIAVDVT 191 (292)
T ss_dssp HHHTTS--S-SSEEEEEEESSCTTTS---HHHHHHHHH-----H-CSEEEEEEEE
T ss_pred HHHhhc--CCCceEEEEEEeeeeecC---cceeecccc-----cCCCEEEEEeee
Confidence 344543 345899999999999998 799887653 578888877754
No 72
>PRK09961 exoaminopeptidase; Provisional
Probab=93.03 E-value=0.12 Score=42.71 Aligned_cols=39 Identities=26% Similarity=0.200 Sum_probs=32.3
Q ss_pred CCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCC
Q 028821 10 KLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTA 56 (203)
Q Consensus 10 ~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~ 56 (203)
++..+|+++|+..||.|. .|++.... .++||.+|..|.+
T Consensus 185 ~~~~~v~~~~tvqEEvG~---rGa~~aa~-----~i~pd~~I~vDv~ 223 (344)
T PRK09961 185 ELPAEVWLVASSSEEVGL---RGGQTATR-----AVSPDVAIVLDTA 223 (344)
T ss_pred CCCceEEEEEEcccccch---HHHHHHHh-----ccCCCEEEEEecc
Confidence 467899999999999998 68887754 3578999988876
No 73
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=92.95 E-value=0.081 Score=43.70 Aligned_cols=46 Identities=20% Similarity=0.205 Sum_probs=35.8
Q ss_pred ccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCCC
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD 57 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~ 57 (203)
|.| + +..++.+++|+|++-||.|- .|++.... .++||.+|.++.+.
T Consensus 193 k~l-~-~~~~~~~vy~v~tvqEEVGl---rGA~~~a~-----~i~pd~aiavd~~~ 238 (355)
T COG1363 193 KEL-K-GIELPADVYFVASVQEEVGL---RGAKTSAF-----RIKPDIAIAVDVTP 238 (355)
T ss_pred HHh-c-cCCCCceEEEEEecchhhcc---chhhcccc-----ccCCCEEEEEeccc
Confidence 445 3 46788999999999999997 68766543 46889999888763
No 74
>PRK09864 putative peptidase; Provisional
Probab=92.67 E-value=0.13 Score=42.74 Aligned_cols=39 Identities=23% Similarity=0.163 Sum_probs=32.8
Q ss_pred CceeEEEEEEecCCCCCCCCccHHHHHhccccCCCCCCCEEEeeCCC
Q 028821 11 LKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD 57 (203)
Q Consensus 11 ~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~ 57 (203)
+..+|+++|++-||.|. .||+.... .++||.+|..|.+.
T Consensus 193 ~~~~vy~v~TvQEEvGl---rGA~~aa~-----~i~PDiaIavDvt~ 231 (356)
T PRK09864 193 PEITLYGVGSVEEEVGL---RGAQTSAE-----HIKPDVVIVLDTAV 231 (356)
T ss_pred CCCeEEEEEEcchhcch---HHHHHHHh-----cCCCCEEEEEeccc
Confidence 67899999999999997 79887764 36789999988764
No 75
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=91.49 E-value=0.12 Score=42.67 Aligned_cols=26 Identities=27% Similarity=0.370 Sum_probs=21.5
Q ss_pred ccccccccCCceeEEEEEEecCCCCC
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSA 27 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~ 27 (203)
+.|++.+.++.++|+++|+++||+|.
T Consensus 196 ~~l~~~~~~~~~~v~~~~t~qEEvG~ 221 (343)
T TIGR03106 196 KAIVEHKVPLPVDVHPLFTITEEVGS 221 (343)
T ss_pred HHHHhcCCCCCceEEEEEECCcccCc
Confidence 45666666678999999999999985
No 76
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=91.26 E-value=0.13 Score=42.34 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=27.0
Q ss_pred ccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhc
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKD 39 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~ 39 (203)
++|++. .++.+|.|+|+.+||.|. .|++++++.
T Consensus 156 r~l~~~--~~~~~I~fv~~~~EE~Gl---~GS~~~~~~ 188 (346)
T PRK10199 156 ERLKNV--PTEYGIRFVATSGEEEGK---LGAENLLKR 188 (346)
T ss_pred HHHhhC--CCCCcEEEEEECCcccCc---HHHHHHHHh
Confidence 345543 467799999999999998 799999986
No 77
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=74.63 E-value=2.1 Score=36.35 Aligned_cols=35 Identities=34% Similarity=0.289 Sum_probs=29.1
Q ss_pred ccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhccc
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGL 41 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~~ 41 (203)
++|+.+. ++.+|+|++...||.|. .|+.+++.+..
T Consensus 241 r~l~~~~--p~~~v~f~~~~aEE~Gl---~GS~~~~~~~~ 275 (435)
T COG2234 241 RVLKGNP--PKRTVRFVAFGAEESGL---LGSEAYVKRLS 275 (435)
T ss_pred HHHhcCC--CCceEEEEEecchhhcc---cccHHHHhcCC
Confidence 4566553 88999999999999998 79999998744
No 78
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=64.16 E-value=18 Score=23.16 Aligned_cols=34 Identities=6% Similarity=0.135 Sum_probs=27.9
Q ss_pred EEEEEEeecCCCCCHHHHHHHHHHHHHHhhhcch
Q 028821 145 CTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIE 178 (203)
Q Consensus 145 ~~~~~~iR~~~~~~~~~~~~~i~~~~~~~~~~~~ 178 (203)
+..++.||.+++.+..++.++|.+.++--++.+.
T Consensus 9 f~~tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~ 42 (80)
T cd06406 9 FKYTVAIQVARGLSYATLLQKISSKLELPAEHIT 42 (80)
T ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHhCCCchhcE
Confidence 4557899999999999999999998877555544
No 79
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=49.38 E-value=60 Score=19.92 Aligned_cols=36 Identities=11% Similarity=0.130 Sum_probs=28.0
Q ss_pred CCeEEEEEEeecCCCCCHHHHHHHHHHHHHHhhhcc
Q 028821 142 PGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENI 177 (203)
Q Consensus 142 p~~~~~~~~iR~~~~~~~~~~~~~i~~~~~~~~~~~ 177 (203)
.+...+.+.+..+++.+.+++.+.+++..++.+.++
T Consensus 36 ~~~f~~~~~v~~p~~~~~~~l~~~l~~l~~~l~l~i 71 (75)
T cd04870 36 HGRLSLGILVQIPDSADSEALLKDLLFKAHELGLQV 71 (75)
T ss_pred cCeeEEEEEEEcCCCCCHHHHHHHHHHHHHHcCceE
Confidence 356777788888887788999999999888765543
No 80
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=48.86 E-value=47 Score=21.16 Aligned_cols=35 Identities=11% Similarity=0.161 Sum_probs=30.1
Q ss_pred eEEEEEEeecCCCCCHHHHHHHHHHHHHHhhhcch
Q 028821 144 ECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIE 178 (203)
Q Consensus 144 ~~~~~~~iR~~~~~~~~~~~~~i~~~~~~~~~~~~ 178 (203)
.|.+++.+|.+++.+...+.+.|.+.+.-.+..+.
T Consensus 4 h~~fTVai~v~~g~~y~~L~~~ls~kL~l~~~~~~ 38 (78)
T cd06411 4 QCAFTVALRAPRGADVSSLRALLSQALPQQAQRGQ 38 (78)
T ss_pred EEEEEEEEEccCCCCHHHHHHHHHHHhcCChhhcE
Confidence 57899999999999999999999998887665544
No 81
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=45.45 E-value=65 Score=20.28 Aligned_cols=38 Identities=24% Similarity=0.227 Sum_probs=28.8
Q ss_pred ceeCCeEEEEEEeecCCCCCHHHHHHHHHHHHHHhhhc
Q 028821 139 NQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN 176 (203)
Q Consensus 139 nvip~~~~~~~~iR~~~~~~~~~~~~~i~~~~~~~~~~ 176 (203)
|-+|+-=--++++=+--+.++++.+++|.+.+++++.+
T Consensus 7 ~~i~G~ei~yl~iv~~~~~d~d~Al~eM~e~A~~lGAn 44 (74)
T TIGR03884 7 DEIPGLQLYYLGIVSTESDNVDEIVENLREKVKAKGGM 44 (74)
T ss_pred ccCCCeEEEEEEEEEEecCCHHHHHHHHHHHHHHcCCC
Confidence 45666444556666666778999999999999998776
No 82
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=44.08 E-value=11 Score=34.89 Aligned_cols=50 Identities=22% Similarity=0.381 Sum_probs=36.8
Q ss_pred ccccccccCCceeEEEEEEecCCCCCCCCccHHHHHhcc-ccCCCCCCCEEEeeCC
Q 028821 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDG-LLNKLKGGPLYWIDTA 56 (203)
Q Consensus 2 k~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~~-~~~~~~~d~~i~~e~~ 56 (203)
+++.+....+..+|+|+|-.+||.+. .|+..++.+. +.+.++ ++|..|.+
T Consensus 176 Rv~s~~~~~l~~~vVFLfNgaEE~~L---~gsH~FItQH~w~~~~k--a~INLea~ 226 (834)
T KOG2194|consen 176 RVLSKSDKLLTHSVVFLFNGAEESGL---LGSHAFITQHPWSKNIK--AVINLEAA 226 (834)
T ss_pred HHhhcCCCcccccEEEEecCcccchh---hhcccceecChhhhhhh--eEEecccc
Confidence 45666665678999999999999987 7999999753 333443 67776654
No 83
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=42.60 E-value=17 Score=33.22 Aligned_cols=34 Identities=18% Similarity=0.243 Sum_probs=29.4
Q ss_pred cccccccCCceeEEEEEEecCCCCCCCCccHHHHHhc
Q 028821 3 KLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKD 39 (203)
Q Consensus 3 ~L~~~~~~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~ 39 (203)
.+.+.+++|.++|+|+.=.+||-|. .|+-.+++.
T Consensus 387 ~~~k~gwrP~RtI~F~sWdAeEfGl---iGStE~~E~ 420 (702)
T KOG2195|consen 387 KLKKRGWRPRRTILFASWDAEEFGL---LGSTEWAEE 420 (702)
T ss_pred HHHHcCCCccceEEEEEccchhccc---cccHHHHHH
Confidence 3556789999999999999999998 799888874
No 84
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=41.57 E-value=84 Score=19.32 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=26.2
Q ss_pred CeEEEEEEeecCCCCCHHHHHHHHHHHHHHhhhc
Q 028821 143 GECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN 176 (203)
Q Consensus 143 ~~~~~~~~iR~~~~~~~~~~~~~i~~~~~~~~~~ 176 (203)
+...+.+.+..++..+..++.+.++...++.+.+
T Consensus 43 ~~~~~~~~v~~p~~~~~~~l~~~l~~l~~~~~~~ 76 (81)
T cd04869 43 PLFKAQATLALPAGTDLDALREELEELCDDLNVD 76 (81)
T ss_pred ceEEEEEEEecCCCCCHHHHHHHHHHHHHHhcce
Confidence 5667777888887678888888888888776544
No 85
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=33.05 E-value=93 Score=19.80 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=26.0
Q ss_pred CCeEEEEEEeecCCCCCHHHHHHHHHHHHHHhhhcc
Q 028821 142 PGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENI 177 (203)
Q Consensus 142 p~~~~~~~~iR~~~~~~~~~~~~~i~~~~~~~~~~~ 177 (203)
+....+.+.++-++ .+.+.+.+.+.+..++.+.++
T Consensus 46 ~~~~~~e~~v~~~~-~~~~~lr~~L~~la~elgvDI 80 (84)
T cd04871 46 SPKACVEFSVRGQP-ADLEALRAALLELASELNVDI 80 (84)
T ss_pred CCcEEEEEEEeCCC-CCHHHHHHHHHHHhcccCceE
Confidence 45568888999766 788888888888777765443
No 86
>PF11524 SeleniumBinding: Selenium binding protein; InterPro: IPR021603 Selenium is an important nutrient which needs to be regulated since lack of the nutrient leads to cell abnormalities and high concentrations are toxic.SeBP regulates the level of free selenium in the cell by sequestering the nutrient during transport. SeBP acts as a pentamer and delivers the selenium to the selenophosphate synthetase enzyme []. Each subunit is composed of an alpha helix on top of a four stranded twisted ss sheet, stabilised by hydrogen bonds []. members of this entry are restricted to the archaeal Methanococcales.; PDB: 2JZ7_D.
Probab=27.64 E-value=1.3e+02 Score=19.05 Aligned_cols=38 Identities=26% Similarity=0.273 Sum_probs=24.4
Q ss_pred cceeCCeEEEEEEeecCCCCCHHHHHHHHHHHHHHhhh
Q 028821 138 INQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINE 175 (203)
Q Consensus 138 ~nvip~~~~~~~~iR~~~~~~~~~~~~~i~~~~~~~~~ 175 (203)
.|-||+---.+.++=+....+.+++++.+++.+++...
T Consensus 12 ~~eIPGiely~~gIvS~~~envd~li~~lee~vk~k~~ 49 (81)
T PF11524_consen 12 TNEIPGIELYYLGIVSEASENVDELIKKLEEKVKAKGG 49 (81)
T ss_dssp SS--TTS--EEEEEEEEBSSSHHHHHHHHHHHHHHTT-
T ss_pred cCcCCCeEEEeehhHHHHHhhHHHHHHHHHHHHHhCCC
Confidence 35678765555666555556899999999998887543
No 87
>PRK06156 hypothetical protein; Provisional
Probab=26.38 E-value=1.8e+02 Score=25.49 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=19.0
Q ss_pred EeeEEEecCCCccceeCCeEEEEEE
Q 028821 126 MKPTQWSYPGGGINQIPGECTVSGD 150 (203)
Q Consensus 126 ~~~~~i~~gg~~~nvip~~~~~~~~ 150 (203)
.++..++ ||...|+||+.|.+.+.
T Consensus 241 ~~l~~~~-gG~~~n~ip~~a~~~~~ 264 (520)
T PRK06156 241 AEIVAMT-GGAFANQIPQTAVATLS 264 (520)
T ss_pred eeEEEEE-cCCcCCCCCCccEEEEe
Confidence 3456677 89999999999998744
No 88
>PF03822 NAF: NAF domain; InterPro: IPR004041 The NAF domain is a 24 amino acid domain that is found in a plant-specific subgroup of serine-threonine protein kinases (CIPKs), that interact with calcineurin B-like calcium sensor proteins (CBLs). Whereas the N-terminal part of CIPKs comprises a conserved catalytic domain typical of Ser-Thr kinases, the much less conserved C-terminal domain appears to be unique to this subgroup of kinases. The only exception is the NAF domain that forms an 'island of conservation' in this otherwise variable region. The NAF domain has been named after the prominent conserved amino acids Asn-Ala-Phe. It represents a minimum protein interaction module that is both necessary and sufficient to mediate the interaction with the CBL calcium sensor proteins []. The secondary structure of the NAF domain is currently not known, but secondary structure computation of the C-terminal region of Arabidopsis thaliana CBL-interacting protein kinase 1 revealed a long helical structure [].; GO: 0007165 signal transduction; PDB: 2ZFD_B 2EHB_D.
Probab=25.03 E-value=60 Score=19.74 Aligned_cols=27 Identities=15% Similarity=0.358 Sum_probs=19.6
Q ss_pred eecCCCCCHHHHHHHHHHHHHHhhhcc
Q 028821 151 VRLTPFYNVTDVMKRLQEYVDDINENI 177 (203)
Q Consensus 151 iR~~~~~~~~~~~~~i~~~~~~~~~~~ 177 (203)
.|+.....+..++++|+++++.....|
T Consensus 35 ~RF~S~~~~~~Ii~klEe~a~~~~~~V 61 (63)
T PF03822_consen 35 TRFTSKEPASEIIEKLEEIAKKLGFRV 61 (63)
T ss_dssp EEEEESS-HHHHHHHHHHHHHHTTEEE
T ss_pred ceEecCCCHHHHHHHHHHHHHhcCcee
Confidence 456666778999999999988765443
No 89
>PRK02813 putative aminopeptidase 2; Provisional
Probab=24.91 E-value=50 Score=28.31 Aligned_cols=45 Identities=27% Similarity=0.313 Sum_probs=28.3
Q ss_pred ceeEEEEEEecCCCCCCCCccHHH-----HHhc-----c-----ccCCCCCCCEEEeeCC
Q 028821 12 KSTVIAVFIASEENSAITGVGVDA-----LVKD-----G-----LLNKLKGGPLYWIDTA 56 (203)
Q Consensus 12 ~~~v~l~~~~dEE~g~~~~~G~~~-----~~~~-----~-----~~~~~~~d~~i~~e~~ 56 (203)
...++++|+..||+|+..-.||.. ++++ + ....+.++.+|..|.+
T Consensus 252 ~~~~~~~~~d~EEVGs~~~~GA~s~~l~~~l~ri~~~~~~~~~~~~~~i~~s~~IS~Dva 311 (428)
T PRK02813 252 DATNVLAAFDHEEVGSATKQGADSPFLEDVLERIVLALGGDREDFLRALARSFLISADMA 311 (428)
T ss_pred CCeEEEEEEecCccCCCCCcccCchhHHHHHHHHHHhhcCchHHHHHhhCCCeEEEEecc
Confidence 578999999999999832226663 1111 0 0124567888877765
No 90
>COG4829 CatC1 Muconolactone delta-isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.89 E-value=1.8e+02 Score=18.95 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=16.5
Q ss_pred EEEEEeecCCCCCHHHHHHHHHHHHHHh
Q 028821 146 TVSGDVRLTPFYNVTDVMKRLQEYVDDI 173 (203)
Q Consensus 146 ~~~~~iR~~~~~~~~~~~~~i~~~~~~~ 173 (203)
-++.++|.|+..+. +..+++++.=++.
T Consensus 4 lv~Mtv~~PdsMda-d~~er~~A~Eka~ 30 (98)
T COG4829 4 LVTMTVRVPDSMDA-DAVERVRAREKAR 30 (98)
T ss_pred EEEEEEEcCCCCCH-HHHHHHHHHHHHH
Confidence 45678899987774 4455555443333
No 91
>PF03869 Arc: Arc-like DNA binding domain; InterPro: IPR005569 Arc repressor act by the cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognise bases in the major groove [].; GO: 0003677 DNA binding; PDB: 3QOQ_D 1MNT_B 1QTG_B 1BDV_A 1PAR_C 1BDT_C 1ARR_B 1MYL_F 1MYK_A 1NLA_B ....
Probab=21.26 E-value=1.6e+02 Score=16.75 Aligned_cols=22 Identities=18% Similarity=0.381 Sum_probs=16.2
Q ss_pred EEEeecCCCCCHHHHHHHHHHHHHHhh
Q 028821 148 SGDVRLTPFYNVTDVMKRLQEYVDDIN 174 (203)
Q Consensus 148 ~~~iR~~~~~~~~~~~~~i~~~~~~~~ 174 (203)
.+++|.| +++.+.|+..++.-+
T Consensus 6 ~f~lRlP-----~~l~~~lk~~A~~~g 27 (50)
T PF03869_consen 6 QFNLRLP-----EELKEKLKERAEENG 27 (50)
T ss_dssp EEEEECE-----HHHHHHHHHHHHHTT
T ss_pred ceeeECC-----HHHHHHHHHHHHHhC
Confidence 4688875 688888888777643
No 92
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane
Probab=21.25 E-value=80 Score=24.64 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=23.8
Q ss_pred CCceeEEEEEEecCCCCCCCCccHHHHHhc
Q 028821 10 KLKSTVIAVFIASEENSAITGVGVDALVKD 39 (203)
Q Consensus 10 ~~~~~v~l~~~~dEE~g~~~~~G~~~~~~~ 39 (203)
.++++|.|+|..+|--|. .|++.++.+
T Consensus 48 ~~~knV~F~~F~GEs~dY---iGS~R~vyD 74 (234)
T PF05450_consen 48 NLNKNVLFAFFNGESFDY---IGSSRFVYD 74 (234)
T ss_pred cccCcEEEEEecCccccc---cchHHHHHH
Confidence 568999999999999987 799999865
No 93
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=20.27 E-value=2e+02 Score=18.27 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=20.8
Q ss_pred EEEEEeecCCCCCHHHHHHHHHHHH
Q 028821 146 TVSGDVRLTPFYNVTDVMKRLQEYV 170 (203)
Q Consensus 146 ~~~~~iR~~~~~~~~~~~~~i~~~~ 170 (203)
....+.|++++.+..++++++....
T Consensus 12 ~~~~ekr~~~~~Tv~~lK~kl~~~~ 36 (84)
T cd01789 12 SFSFEKKYSRGLTIAELKKKLELVV 36 (84)
T ss_pred ceeeeEecCCCCcHHHHHHHHHHHH
Confidence 4557899999999999999987764
No 94
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=20.17 E-value=2.1e+02 Score=23.13 Aligned_cols=29 Identities=31% Similarity=0.264 Sum_probs=19.5
Q ss_pred EeeEEEecCCCccceeCCeEEEEEEeecCCC
Q 028821 126 MKPTQWSYPGGGINQIPGECTVSGDVRLTPF 156 (203)
Q Consensus 126 ~~~~~i~~gg~~~nvip~~~~~~~~iR~~~~ 156 (203)
+.+..++ =|-.+ -+|-.+.+.+|+|+.||
T Consensus 162 l~v~i~S-FGfK~-GiP~dAD~VfDvRfLpN 190 (284)
T PF03668_consen 162 LTVTIQS-FGFKY-GIPPDADLVFDVRFLPN 190 (284)
T ss_pred eEEEEEE-ecccc-CCCCCCCEEEEcCcCCC
Confidence 3343333 34444 38889999999998875
Done!