BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028822
         (203 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q494D7|HIS4_BLOPB 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]
           imidazole-4-carboxamide isomerase OS=Blochmannia
           pennsylvanicus (strain BPEN) GN=hisA PE=3 SV=1
          Length = 246

 Score = 32.3 bits (72), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 25/43 (58%)

Query: 67  WPSEPELKIERLHLAHFHVRMKPAICIDISLNVTLKVHNRDVY 109
           W  E +L++E++   ++ V +K  IC DIS + TL   N  +Y
Sbjct: 146 WQKETDLQLEQIIEEYYTVGLKHVICTDISKDGTLLGSNISLY 188


>sp|Q6FWB9|MED1_CANGA Mediator of RNA polymerase II transcription subunit 1 OS=Candida
           glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
           0622 / NRRL Y-65) GN=MED1 PE=3 SV=1
          Length = 565

 Score = 31.2 bits (69), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 22/33 (66%)

Query: 154 VKVLSDVVYLLEDLARGTVPFDTITKVTGHLGL 186
           V+VL D++ LL+D   GT+  + ITK+   +GL
Sbjct: 6   VEVLGDLIGLLKDYKPGTITIENITKLCQSMGL 38


>sp|Q7VQW6|HIS4_BLOFL 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]
           imidazole-4-carboxamide isomerase OS=Blochmannia
           floridanus GN=hisA PE=3 SV=1
          Length = 251

 Score = 30.8 bits (68), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 14/97 (14%)

Query: 32  NYTILPYYYLENPRR--NWYATIAISLILLAALLYV-----------FWPSEPELKIERL 78
           N  IL    + +P++   W+     S ++LA  +Y+            W  E  +++E +
Sbjct: 99  NRVILGSIAITHPKKVKQWFTYFNPSSLVLALDIYIDSKNNRKVVIHGWQKETNIQLEEV 158

Query: 79  HLAHFHVRMKPAICIDISLNVTLKVHNRDVY-SVNYK 114
              +  V +K  +C DIS + TL   N ++Y S+ YK
Sbjct: 159 IENYNSVGLKHVLCTDISKDGTLLGSNINLYQSICYK 195


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.139    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,640,975
Number of Sequences: 539616
Number of extensions: 3032045
Number of successful extensions: 9869
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 9866
Number of HSP's gapped (non-prelim): 8
length of query: 203
length of database: 191,569,459
effective HSP length: 112
effective length of query: 91
effective length of database: 131,132,467
effective search space: 11933054497
effective search space used: 11933054497
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)