Query 028822
Match_columns 203
No_of_seqs 155 out of 627
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 03:05:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028822.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028822hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 1.5E-39 3.2E-44 271.4 26.8 191 9-203 3-201 (219)
2 PF07092 DUF1356: Protein of u 99.7 2.7E-15 5.8E-20 125.5 19.3 120 31-151 57-181 (238)
3 PF03168 LEA_2: Late embryogen 99.5 6.1E-14 1.3E-18 101.9 9.3 97 100-200 1-100 (101)
4 smart00769 WHy Water Stress an 99.2 3.8E-10 8.3E-15 83.0 10.9 87 92-185 12-99 (100)
5 COG5608 LEA14-like dessication 98.5 3.5E-05 7.6E-10 60.6 17.0 121 59-193 23-147 (161)
6 PF12751 Vac7: Vacuolar segreg 96.8 0.0043 9.2E-08 55.7 7.4 62 63-129 321-382 (387)
7 PF14155 DUF4307: Domain of un 92.5 2.2 4.8E-05 31.9 9.7 81 57-152 17-99 (112)
8 PF11837 DUF3357: Domain of un 87.7 0.16 3.6E-06 37.7 0.0 35 18-54 4-38 (106)
9 PF11797 DUF3324: Protein of u 60.4 75 0.0016 24.4 10.8 88 69-179 26-115 (140)
10 KOG3950 Gamma/delta sarcoglyca 58.0 4.5 9.8E-05 34.6 0.8 37 71-107 72-120 (292)
11 PF14874 PapD-like: Flagellar- 53.1 77 0.0017 22.3 6.7 53 95-150 20-72 (102)
12 PRK10893 lipopolysaccharide ex 52.9 1.3E+02 0.0027 24.6 10.4 21 67-87 37-57 (192)
13 PF07423 DUF1510: Protein of u 51.4 9.2 0.0002 32.1 1.6 25 45-69 13-38 (217)
14 PF12505 DUF3712: Protein of u 50.7 50 0.0011 24.7 5.5 25 95-119 100-124 (125)
15 PF11906 DUF3426: Protein of u 48.2 80 0.0017 24.0 6.4 54 97-150 70-135 (149)
16 PRK05529 cell division protein 47.9 24 0.00053 30.0 3.7 15 70-84 58-72 (255)
17 PF07705 CARDB: CARDB; InterP 46.1 94 0.002 21.2 9.0 51 97-151 21-71 (101)
18 PF09865 DUF2092: Predicted pe 45.3 1.8E+02 0.0039 24.2 9.2 38 92-129 36-75 (214)
19 PF06919 Phage_T4_Gp30_7: Phag 45.2 50 0.0011 24.7 4.4 38 105-142 40-78 (121)
20 KOG1924 RhoA GTPase effector D 43.3 24 0.00052 35.2 3.2 14 66-79 614-630 (1102)
21 COG3121 FimC P pilus assembly 39.9 52 0.0011 27.7 4.5 44 99-147 165-208 (235)
22 COG5178 PRP8 U5 snRNP spliceos 36.2 33 0.00071 35.9 3.0 13 13-25 10-22 (2365)
23 PF11395 DUF2873: Protein of u 35.6 9.8 0.00021 23.0 -0.4 21 46-66 12-32 (43)
24 PF11322 DUF3124: Protein of u 35.4 1.3E+02 0.0027 23.2 5.5 52 94-148 22-76 (125)
25 PF07787 DUF1625: Protein of u 33.8 30 0.00064 29.2 2.0 12 57-68 237-248 (248)
26 COG5325 t-SNARE complex subuni 31.4 24 0.00053 30.6 1.1 17 37-53 250-266 (283)
27 PF00927 Transglut_C: Transglu 29.5 2.1E+02 0.0046 20.3 6.8 55 95-149 15-74 (107)
28 COG4698 Uncharacterized protei 29.4 35 0.00076 27.9 1.6 23 58-80 26-48 (197)
29 PF11739 DctA-YdbH: Dicarboxyl 29.0 3.2E+02 0.0068 22.2 10.7 81 94-187 14-94 (207)
30 PF12505 DUF3712: Protein of u 25.2 2.9E+02 0.0062 20.5 7.3 57 126-187 2-60 (125)
31 PF06072 Herpes_US9: Alphaherp 23.9 27 0.00058 23.3 0.1 8 45-52 31-38 (60)
32 PF12734 CYSTM: Cysteine-rich 22.0 72 0.0016 19.0 1.7 7 17-23 2-8 (37)
33 PF11027 DUF2615: Protein of u 21.9 37 0.0008 25.2 0.5 13 57-69 63-75 (103)
34 KOG3571 Dishevelled 3 and rela 21.2 3E+02 0.0064 26.4 6.2 81 91-174 246-332 (626)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=100.00 E-value=1.5e-39 Score=271.40 Aligned_cols=191 Identities=17% Similarity=0.272 Sum_probs=159.9
Q ss_pred CCCCCCCCCCCCCccCCCCCCCCceEeccCC-ccCCC-cchhhHHHHHHHH---HHHheeEEEecCCCeEEEEEEEEeee
Q 028822 9 PLPPATPSQPHYYTVLPPQPQDENYTILPYY-YLENP-RRNWYATIAISLI---LLAALLYVFWPSEPELKIERLHLAHF 83 (203)
Q Consensus 9 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~-~r~~~-rc~~~~~~~lv~~---i~~l~~~vlrP~~P~~~v~~~~l~~~ 83 (203)
+.-|++|+.|+..++.++..+.+ .-++. +||+| +||.|++++++++ +++++|++||||+|+|+++++++++|
T Consensus 3 ~~~~~~p~a~~~~~~~~d~~~~~---~~~~~~~r~~~~~c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~ 79 (219)
T PLN03160 3 ETEQVRPLAPAAFRLRSDEEEAT---NHLKKTRRRNCIKCCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKL 79 (219)
T ss_pred ccccCCCCCCCcccccCchhhcC---cchhccccccceEEHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeee
Confidence 34489999999999888654321 00222 23333 6777766554332 45567889999999999999999999
Q ss_pred ecCCC--CCeeEEEEEEEEEEEECCCeeEEEEcCeEEEEEECCEEEeeeeeCCceecCceeEEEEEEEEEEeeeeccchH
Q 028822 84 HVRMK--PAICIDISLNVTLKVHNRDVYSVNYKSLDVSVGYRGRKLGHVKSNHGRVKALASSFIDAELQLKCVKVLSDVV 161 (203)
Q Consensus 84 ~~~~~--~~~~ln~tl~~~v~v~NPN~~~i~Y~~~~~~v~Y~g~~lG~~~~~~~~~~ar~t~~v~~~l~~~~~~l~~~~~ 161 (203)
++++. ....+|++++++|+++|||+++|+|+++++.++|+|+.+|++.+|+|+|++|+++.+++++++.+.++.++ .
T Consensus 80 ~~~~~~~~~~~~n~tl~~~v~v~NPN~~~~~Y~~~~~~v~Y~g~~vG~a~~p~g~~~ar~T~~l~~tv~~~~~~~~~~-~ 158 (219)
T PLN03160 80 ELINNTTLRPGTNITLIADVSVKNPNVASFKYSNTTTTIYYGGTVVGEARTPPGKAKARRTMRMNVTVDIIPDKILSV-P 158 (219)
T ss_pred eeccCCCCceeEEEEEEEEEEEECCCceeEEEcCeEEEEEECCEEEEEEEcCCcccCCCCeEEEEEEEEEEeceeccc-h
Confidence 98752 34689999999999999999999999999999999999999999999999999999999999988888665 7
Q ss_pred HHHHHhcCCeEEEEEEEEEEEEEEEE-EEeeeeEEEEEEEEEC
Q 028822 162 YLLEDLARGTVPFDTITKVTGHLGLF-FLEFPLEVKQEYHVRF 203 (203)
Q Consensus 162 ~l~~D~~~G~v~l~~~~~v~gkv~v~-~~k~~~~~~v~C~v~f 203 (203)
+|.+|+++|.++|+++++++||++++ ++|++++++++|++.+
T Consensus 159 ~L~~D~~~G~v~l~~~~~v~gkVkv~~i~k~~v~~~v~C~v~V 201 (219)
T PLN03160 159 GLLTDISSGLLNMNSYTRIGGKVKILKIIKKHVVVKMNCTMTV 201 (219)
T ss_pred hHHHHhhCCeEEEEEEEEEEEEEEEEEEEEEEEEEEEEeEEEE
Confidence 89999999999999999999999999 7888999999999863
No 2
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=99.70 E-value=2.7e-15 Score=125.48 Aligned_cols=120 Identities=15% Similarity=0.316 Sum_probs=103.8
Q ss_pred CceEeccCC-ccCCC-cchhhHHHH-HHHH-HHHheeEEEecCCCeEEEEEEEEeeeecCCCCCeeEEEEEEEEEEEECC
Q 028822 31 ENYTILPYY-YLENP-RRNWYATIA-ISLI-LLAALLYVFWPSEPELKIERLHLAHFHVRMKPAICIDISLNVTLKVHNR 106 (203)
Q Consensus 31 ~~~~~~p~~-~r~~~-rc~~~~~~~-lv~~-i~~l~~~vlrP~~P~~~v~~~~l~~~~~~~~~~~~ln~tl~~~v~v~NP 106 (203)
+++|||||+ ||.++ |+++|++++ ++|+ +.+|+.|||.||...++-.+++...+.++...+ .+.+++...++++|+
T Consensus 57 qLVALIPy~DqRLKPrRTklyV~~sV~~CLl~~~L~iFFLfPRsV~v~~~gv~s~~V~f~~~~~-~v~l~itn~lNIsN~ 135 (238)
T PF07092_consen 57 QLVALIPYSDQRLKPRRTKLYVFLSVLLCLLLSGLVIFFLFPRSVTVSPVGVKSVTVSFNPDKS-TVQLNITNTLNISNP 135 (238)
T ss_pred cEEEEEeccccccCCceeEEEeeHHHHHHHHHHHheEEEEeCcEEEEecCcEEEEEEEEeCCCC-EEEEEEEEEEEccCC
Confidence 599999998 99888 568888876 5565 567788999999999999999999888886543 467777899999999
Q ss_pred CeeEEEEcCeEEEEEECCEEEeeeeeCC-ceecCceeEEEEEEEEE
Q 028822 107 DVYSVNYKSLDVSVGYRGRKLGHVKSNH-GRVKALASSFIDAELQL 151 (203)
Q Consensus 107 N~~~i~Y~~~~~~v~Y~g~~lG~~~~~~-~~~~ar~t~~v~~~l~~ 151 (203)
|++++...++++++.|..+.+|++.... ..+++++++++.+++..
T Consensus 136 NFy~V~Vt~~s~qv~~~~~VVG~~~~~~~~~I~Prs~~q~~~tV~t 181 (238)
T PF07092_consen 136 NFYPVTVTNLSIQVLYMKTVVGKGKNSNITVIGPRSSKQVNYTVKT 181 (238)
T ss_pred CEEEEEEEeEEEEEEEEEeEEeeeEecceEEecccCCceEEEEeeE
Confidence 9999999999999999999999998876 68999999999887654
No 3
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.53 E-value=6.1e-14 Score=101.89 Aligned_cols=97 Identities=22% Similarity=0.325 Sum_probs=76.0
Q ss_pred EEEEECCCeeEEEEcCeEEEEEECCEEEe-eeeeCCceecCceeEEEEEEEEEEeeeeccchHHHHHHhcCCeEEEEEEE
Q 028822 100 TLKVHNRDVYSVNYKSLDVSVGYRGRKLG-HVKSNHGRVKALASSFIDAELQLKCVKVLSDVVYLLEDLARGTVPFDTIT 178 (203)
Q Consensus 100 ~v~v~NPN~~~i~Y~~~~~~v~Y~g~~lG-~~~~~~~~~~ar~t~~v~~~l~~~~~~l~~~~~~l~~D~~~G~v~l~~~~ 178 (203)
+|+++|||.++++|+++++.++|+|+.+| ....+++.|++++++.+.+.+.++...+ ...+.++. +|..++++..
T Consensus 1 ~l~v~NPN~~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l---~~~l~~~~-~~~~~~~v~~ 76 (101)
T PF03168_consen 1 TLSVRNPNSFGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDL---PRLLKDLL-AGRVPFDVTY 76 (101)
T ss_dssp EEEEEESSSS-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHH---HHHHHHHH-HTTSCEEEEE
T ss_pred CEEEECCCceeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcHHHH---HHHHHhhh-ccccceEEEE
Confidence 58999999999999999999999999999 6678889999999999999888877655 24455566 7788888889
Q ss_pred EEEEEEEE-E-EEeeeeEEEEEEE
Q 028822 179 KVTGHLGL-F-FLEFPLEVKQEYH 200 (203)
Q Consensus 179 ~v~gkv~v-~-~~k~~~~~~v~C~ 200 (203)
+++|++++ + .+..+.+..++|+
T Consensus 77 ~~~g~~~v~~~~~~~~~~v~~~~~ 100 (101)
T PF03168_consen 77 RIRGTFKVLGTPIFGSVRVPVSCE 100 (101)
T ss_dssp EEEEEEE-EE-TTTSCEEEEEEEE
T ss_pred EEEEEEEEcccceeeeEEEeEEeE
Confidence 99999995 3 3334555555554
No 4
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=99.18 E-value=3.8e-10 Score=83.05 Aligned_cols=87 Identities=17% Similarity=0.309 Sum_probs=72.2
Q ss_pred eEEEEEEEEEEEECCCeeEEEEcCeEEEEEECCEEEeeeeeC-CceecCceeEEEEEEEEEEeeeeccchHHHHHHhcCC
Q 028822 92 CIDISLNVTLKVHNRDVYSVNYKSLDVSVGYRGRKLGHVKSN-HGRVKALASSFIDAELQLKCVKVLSDVVYLLEDLARG 170 (203)
Q Consensus 92 ~ln~tl~~~v~v~NPN~~~i~Y~~~~~~v~Y~g~~lG~~~~~-~~~~~ar~t~~v~~~l~~~~~~l~~~~~~l~~D~~~G 170 (203)
.+++++.++++++|||.+++.+++++..++|+|..+|++..+ .+.+++++++.+.+++++. .. +...+..++.+|
T Consensus 12 ~~~~~~~l~l~v~NPN~~~l~~~~~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~~~-~~---~~~~~~~~l~~~ 87 (100)
T smart00769 12 GLEIEIVLKVKVQNPNPFPIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVTVN-LF---LAEALIWHIANG 87 (100)
T ss_pred ceEEEEEEEEEEECCCCCccccccEEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEEEee-hh---HhHHHHHhhccC
Confidence 578889999999999999999999999999999999999985 6999999999999998884 22 235678888877
Q ss_pred eEEEEEEEEEEEEEE
Q 028822 171 TVPFDTITKVTGHLG 185 (203)
Q Consensus 171 ~v~l~~~~~v~gkv~ 185 (203)
. ++..+++|++.
T Consensus 88 ~---~~~y~l~g~l~ 99 (100)
T smart00769 88 E---EIPYRLDGKLT 99 (100)
T ss_pred C---CccEEEEEEEC
Confidence 6 33445666654
No 5
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=98.46 E-value=3.5e-05 Score=60.62 Aligned_cols=121 Identities=16% Similarity=0.242 Sum_probs=87.5
Q ss_pred HHheeEEEecCCCeEEEEEEEEeeeecCCCCCeeEEEEEEEEEEEECCCeeEEEEcCeEEEEEECCEEEeeeee-CCcee
Q 028822 59 LAALLYVFWPSEPELKIERLHLAHFHVRMKPAICIDISLNVTLKVHNRDVYSVNYKSLDVSVGYRGRKLGHVKS-NHGRV 137 (203)
Q Consensus 59 ~~l~~~vlrP~~P~~~v~~~~l~~~~~~~~~~~~ln~tl~~~v~v~NPN~~~i~Y~~~~~~v~Y~g~~lG~~~~-~~~~~ 137 (203)
+.++...+ ++|.++--.++.-.+.- ....+-.+++++|||-+++-..+++..++-+|.++|++.. .++.+
T Consensus 23 lS~~~i~~--~~p~ve~~ka~wGkvt~-------s~~EiV~t~KiyNPN~fPipVtgl~y~vymN~Iki~eG~~~k~~~v 93 (161)
T COG5608 23 LSGCMIPV--KKPGVESMKAKWGKVTN-------SETEIVGTLKIYNPNPFPIPVTGLQYAVYMNDIKIGEGEILKGTTV 93 (161)
T ss_pred hhCCceEc--CCCCceEEEEEEEEEec-------cceEEEEEEEecCCCCcceeeeceEEEEEEcceEeeccccccceEE
Confidence 33443344 67877777776666552 3446678999999999999999999999999999999975 55999
Q ss_pred cCceeEEEEEEEEEEeeeeccchHHHHHHhcCCeE-EEEEEEEEEEEEEEE--EEeeee
Q 028822 138 KALASSFIDAELQLKCVKVLSDVVYLLEDLARGTV-PFDTITKVTGHLGLF--FLEFPL 193 (203)
Q Consensus 138 ~ar~t~~v~~~l~~~~~~l~~~~~~l~~D~~~G~v-~l~~~~~v~gkv~v~--~~k~~~ 193 (203)
++++..++++++.++-.++- ..+...+++|+- +++ .++.|.++++ .++.++
T Consensus 94 ~p~S~~tvdv~l~~d~~~~k---e~w~~hi~ngErs~Ir--~~i~~~v~vg~~d~eVpi 147 (161)
T COG5608 94 PPNSRETVDVPLRLDNSKIK---EWWVTHIENGERSTIR--VRIKGVVKVGGMDYEVPI 147 (161)
T ss_pred CCCCeEEEEEEEEEehHHHH---HHHHHHhhccCcccEE--EEEEEEEEEccEEEEEEE
Confidence 99999999999988865551 335667888873 443 3444544444 445444
No 6
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=96.82 E-value=0.0043 Score=55.73 Aligned_cols=62 Identities=15% Similarity=0.345 Sum_probs=40.1
Q ss_pred eEEEecCCCeEEEEEEEEeeeecCCCCCeeEEEEEEEEEEEECCCeeEEEEcCeEEEEEECCEEEee
Q 028822 63 LYVFWPSEPELKIERLHLAHFHVRMKPAICIDISLNVTLKVHNRDVYSVNYKSLDVSVGYRGRKLGH 129 (203)
Q Consensus 63 ~~vlrP~~P~~~v~~~~l~~~~~~~~~~~~ln~tl~~~v~v~NPN~~~i~Y~~~~~~v~Y~g~~lG~ 129 (203)
.|+|--..|--.|.=..+.++=.+ .-.+-|+++|++.|||.+.|..++.++.|+-+-.-+|.
T Consensus 321 gFv~AttKpL~~v~v~~I~NVlaS-----~qELmfdl~V~A~NPn~~~V~I~d~dldIFAKS~yvg~ 382 (387)
T PF12751_consen 321 GFVFATTKPLTDVQVVSIQNVLAS-----EQELMFDLTVEAFNPNWFTVTIDDMDLDIFAKSRYVGT 382 (387)
T ss_pred HhhhhcCcccccceEEEeeeeeec-----cceEEEeeEEEEECCCeEEEEeccceeeeEecCCccCc
Confidence 455544444333333333443332 23456788999999999999999999999876655553
No 7
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=92.47 E-value=2.2 Score=31.93 Aligned_cols=81 Identities=10% Similarity=0.185 Sum_probs=39.4
Q ss_pred HHHHheeEEEe-cCCCeEEEEEEEEeeeecCCCCCeeEEEEEEEEEEEECCCe-eEEEEcCeEEEEEECCEEEeeeeeCC
Q 028822 57 ILLAALLYVFW-PSEPELKIERLHLAHFHVRMKPAICIDISLNVTLKVHNRDV-YSVNYKSLDVSVGYRGRKLGHVKSNH 134 (203)
Q Consensus 57 ~i~~l~~~vlr-P~~P~~~v~~~~l~~~~~~~~~~~~ln~tl~~~v~v~NPN~-~~i~Y~~~~~~v~Y~g~~lG~~~~~~ 134 (203)
++++++|+-+. -..+.++ .+..+|+..+.. .++++|++ +-. |.. .-..... ..|+|.++|.-.
T Consensus 17 ~~~~~~w~~~~~~~~~~v~---~~~~gf~vv~d~--~v~v~f~V--tr~-~~~~a~C~VrA----~~~d~aeVGrre--- 81 (112)
T PF14155_consen 17 AGAVVAWFGYSQFGSPPVS---AEVIGFEVVDDS--TVEVTFDV--TRD-PGRPAVCIVRA----LDYDGAEVGRRE--- 81 (112)
T ss_pred HHHHHhHhhhhhccCCCce---EEEEEEEECCCC--EEEEEEEE--EEC-CCCCEEEEEEE----EeCCCCEEEEEE---
Confidence 34455565553 5566653 344455555432 34554433 333 664 4443332 248889999643
Q ss_pred ceecCceeEEEEEEEEEE
Q 028822 135 GRVKALASSFIDAELQLK 152 (203)
Q Consensus 135 ~~~~ar~t~~v~~~l~~~ 152 (203)
..+|+.+...+..++++.
T Consensus 82 V~vp~~~~~~~~~~v~v~ 99 (112)
T PF14155_consen 82 VLVPPSGERTVRVTVTVR 99 (112)
T ss_pred EEECCCCCcEEEEEEEEE
Confidence 233443333444444443
No 8
>PF11837 DUF3357: Domain of unknown function (DUF3357); InterPro: IPR021792 This entry represents the N-terminal domain of beta-fructofuranosidase, whcih is involved in the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides. ; GO: 0004564 beta-fructofuranosidase activity, 0004575 sucrose alpha-glucosidase activity; PDB: 3UGG_A 3UGH_B 3UGF_B.
Probab=87.68 E-value=0.16 Score=37.73 Aligned_cols=35 Identities=14% Similarity=-0.021 Sum_probs=0.0
Q ss_pred CCCCccCCCCCCCCceEeccCCccCCCcchhhHHHHH
Q 028822 18 PHYYTVLPPQPQDENYTILPYYYLENPRRNWYATIAI 54 (203)
Q Consensus 18 ~~~y~~~~~~~~~~~~~~~p~~~r~~~rc~~~~~~~l 54 (203)
|.-|+|.|.++.++--. +.++||..+|++.+++.+
T Consensus 4 p~sY~PLP~~~~~~~~~--~~~~rR~~k~~~~i~~s~ 38 (106)
T PF11837_consen 4 PYSYTPLPDSSESAPGP--GGRRRRPLKCLAAIFSSL 38 (106)
T ss_dssp -------------------------------------
T ss_pred CCccCCCCCCCcccCCC--CcCcCCcchhHHHHHHHH
Confidence 33499999764331000 122334346766655543
No 9
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=60.40 E-value=75 Score=24.36 Aligned_cols=88 Identities=16% Similarity=0.229 Sum_probs=57.9
Q ss_pred CCCeEEEEEEEEeeeecCCCCCeeEEEEEEEEEEEECCCeeEEEEcCeEEEEEECC--EEEeeeeeCCceecCceeEEEE
Q 028822 69 SEPELKIERLHLAHFHVRMKPAICIDISLNVTLKVHNRDVYSVNYKSLDVSVGYRG--RKLGHVKSNHGRVKALASSFID 146 (203)
Q Consensus 69 ~~P~~~v~~~~l~~~~~~~~~~~~ln~tl~~~v~v~NPN~~~i~Y~~~~~~v~Y~g--~~lG~~~~~~~~~~ar~t~~v~ 146 (203)
-.|++.+.+++....+.. -.+.+.++||+..-+.=-.+++.|+..| ..+.+....+..+.+.+. ++
T Consensus 26 ~~p~L~l~~v~~~~~n~~----------~~i~~~l~N~~~~~l~~~~v~a~V~~~~~~k~~~~~~~~~~~mAPNS~--f~ 93 (140)
T PF11797_consen 26 VPPKLKLGKVKPGQINGR----------NVIQANLQNPQPAILKKLTVDAKVTKKGSKKVLYTFKKENMQMAPNSN--FN 93 (140)
T ss_pred cCcccEEeeeeeeEECCe----------eEEEEEEECCCchhhcCcEEEEEEEECCCCeEEEEeeccCCEECCCCe--EE
Confidence 357777777776665532 2356788999876565566778887766 478887888888888644 55
Q ss_pred EEEEEEeeeeccchHHHHHHhcCCeEEEEEEEE
Q 028822 147 AELQLKCVKVLSDVVYLLEDLARGTVPFDTITK 179 (203)
Q Consensus 147 ~~l~~~~~~l~~~~~~l~~D~~~G~v~l~~~~~ 179 (203)
+.+.+.+. .++.|...+++.++
T Consensus 94 ~~i~~~~~-----------~lk~G~Y~l~~~~~ 115 (140)
T PF11797_consen 94 FPIPLGGK-----------KLKPGKYTLKITAK 115 (140)
T ss_pred eEecCCCc-----------CccCCEEEEEEEEE
Confidence 55545443 35677766654433
No 10
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=57.99 E-value=4.5 Score=34.60 Aligned_cols=37 Identities=14% Similarity=0.142 Sum_probs=23.8
Q ss_pred CeEEEEEEEEeeeecC----------C--CCCeeEEEEEEEEEEEECCC
Q 028822 71 PELKIERLHLAHFHVR----------M--KPAICIDISLNVTLKVHNRD 107 (203)
Q Consensus 71 P~~~v~~~~l~~~~~~----------~--~~~~~ln~tl~~~v~v~NPN 107 (203)
-+++-.++++.+-.-- + +...++...=++++++||||
T Consensus 72 Lkit~~GirleG~sefl~pl~akei~Sr~~~~l~~~S~rnvtvnarn~~ 120 (292)
T KOG3950|consen 72 LKITKKGIRLEGDSEFLQPLYAKEIHSRPGSPLYLQSARNVTVNARNPN 120 (292)
T ss_pred eEEccCcEEEechhhhhhhhhhhhhhcCCCCceEEEeccCeeEEccCCC
Confidence 4566667777653211 1 22356777778899999999
No 11
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=53.08 E-value=77 Score=22.25 Aligned_cols=53 Identities=9% Similarity=0.101 Sum_probs=28.3
Q ss_pred EEEEEEEEEECCCeeEEEEcCeEEEEEECCEEEeeeeeCCceecCceeEEEEEEEE
Q 028822 95 ISLNVTLKVHNRDVYSVNYKSLDVSVGYRGRKLGHVKSNHGRVKALASSFIDAELQ 150 (203)
Q Consensus 95 ~tl~~~v~v~NPN~~~i~Y~~~~~~v~Y~g~~lG~~~~~~~~~~ar~t~~v~~~l~ 150 (203)
.+...+++++|-.....+|.=.... ..+..+ +..-..+.+.+..+..+.+++.
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v~~~~--~~~~~~-~v~~~~g~l~PG~~~~~~V~~~ 72 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRVRQPE--SLSSFF-SVEPPSGFLAPGESVELEVTFS 72 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEEeCC--cCCCCE-EEECCCCEECCCCEEEEEEEEE
Confidence 3445688899987644444311000 011112 2233457788888877776654
No 12
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=52.87 E-value=1.3e+02 Score=24.60 Aligned_cols=21 Identities=5% Similarity=0.096 Sum_probs=17.8
Q ss_pred ecCCCeEEEEEEEEeeeecCC
Q 028822 67 WPSEPELKIERLHLAHFHVRM 87 (203)
Q Consensus 67 rP~~P~~~v~~~~l~~~~~~~ 87 (203)
.++.|+|...+++...++-+.
T Consensus 37 ~~~~Pdy~~~~~~~~~yd~~G 57 (192)
T PRK10893 37 NNNDPTYQSQHTDTVVYNPEG 57 (192)
T ss_pred CCCCCCEEEeccEEEEECCCC
Confidence 467899999999999988764
No 13
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=51.36 E-value=9.2 Score=32.10 Aligned_cols=25 Identities=12% Similarity=0.259 Sum_probs=12.2
Q ss_pred cchhhHHHHHHHH-HHHheeEEEecC
Q 028822 45 RRNWYATIAISLI-LLAALLYVFWPS 69 (203)
Q Consensus 45 rc~~~~~~~lv~~-i~~l~~~vlrP~ 69 (203)
...|=+++++|++ |+++++++|.+.
T Consensus 13 N~iLNiaI~IV~lLIiiva~~lf~~~ 38 (217)
T PF07423_consen 13 NKILNIAIGIVSLLIIIVAYQLFFGG 38 (217)
T ss_pred hhhHHHHHHHHHHHHHHHhhhheecC
Confidence 3444455554443 445555555543
No 14
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=50.65 E-value=50 Score=24.67 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=19.5
Q ss_pred EEEEEEEEEECCCeeEEEEcCeEEE
Q 028822 95 ISLNVTLKVHNRDVYSVNYKSLDVS 119 (203)
Q Consensus 95 ~tl~~~v~v~NPN~~~i~Y~~~~~~ 119 (203)
.++..++.+.||..+++..++++..
T Consensus 100 ~~~~~~~~l~NPS~~ti~lG~v~~~ 124 (125)
T PF12505_consen 100 INLNATVTLPNPSPLTIDLGNVTLN 124 (125)
T ss_pred EEEEEEEEEcCCCeEEEEeccEEEe
Confidence 3446788889999999988887765
No 15
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=48.22 E-value=80 Score=24.05 Aligned_cols=54 Identities=19% Similarity=0.181 Sum_probs=39.9
Q ss_pred EEEEEEEECCCeeEEEEcCeEEEEE-ECCEEEeeeee-C----------CceecCceeEEEEEEEE
Q 028822 97 LNVTLKVHNRDVYSVNYKSLDVSVG-YRGRKLGHVKS-N----------HGRVKALASSFIDAELQ 150 (203)
Q Consensus 97 l~~~v~v~NPN~~~i~Y~~~~~~v~-Y~g~~lG~~~~-~----------~~~~~ar~t~~v~~~l~ 150 (203)
+.++.+++|.......|-.+.+++. -+|+.+.+-.+ | ...+++..+..+..++.
T Consensus 70 l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~~~~~~~~~ 135 (149)
T PF11906_consen 70 LVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGESVPFRLRLE 135 (149)
T ss_pred EEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEEChHHhcccccccccccCCCCeEEEEEEee
Confidence 4567889999999999999999997 67888887765 3 23456666655555443
No 16
>PRK05529 cell division protein FtsQ; Provisional
Probab=47.94 E-value=24 Score=30.02 Aligned_cols=15 Identities=20% Similarity=0.295 Sum_probs=12.8
Q ss_pred CCeEEEEEEEEeeee
Q 028822 70 EPELKIERLHLAHFH 84 (203)
Q Consensus 70 ~P~~~v~~~~l~~~~ 84 (203)
.|.+.+..+++.+-.
T Consensus 58 Sp~~~v~~I~V~Gn~ 72 (255)
T PRK05529 58 SPLLALRSIEVAGNM 72 (255)
T ss_pred CCceEEEEEEEECCc
Confidence 789999999998755
No 17
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=46.08 E-value=94 Score=21.21 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=31.7
Q ss_pred EEEEEEEECCCeeEEEEcCeEEEEEECCEEEeeeeeCCceecCceeEEEEEEEEE
Q 028822 97 LNVTLKVHNRDVYSVNYKSLDVSVGYRGRKLGHVKSNHGRVKALASSFIDAELQL 151 (203)
Q Consensus 97 l~~~v~v~NPN~~~i~Y~~~~~~v~Y~g~~lG~~~~~~~~~~ar~t~~v~~~l~~ 151 (203)
+.++++++|.-... -+++.+.++.+|..++...+ ..+++.++..+.+++..
T Consensus 21 ~~i~~~V~N~G~~~--~~~~~v~~~~~~~~~~~~~i--~~L~~g~~~~v~~~~~~ 71 (101)
T PF07705_consen 21 VTITVTVKNNGTAD--AENVTVRLYLDGNSVSTVTI--PSLAPGESETVTFTWTP 71 (101)
T ss_dssp EEEEEEEEE-SSS---BEEEEEEEEETTEEEEEEEE--SEB-TTEEEEEEEEEE-
T ss_pred EEEEEEEEECCCCC--CCCEEEEEEECCceeccEEE--CCcCCCcEEEEEEEEEe
Confidence 34577888865433 34567778888888877666 45566667777666554
No 18
>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function.
Probab=45.25 E-value=1.8e+02 Score=24.21 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=30.3
Q ss_pred eEEEEEEEEEEEECCCeeEEEE--cCeEEEEEECCEEEee
Q 028822 92 CIDISLNVTLKVHNRDVYSVNY--KSLDVSVGYRGRKLGH 129 (203)
Q Consensus 92 ~ln~tl~~~v~v~NPN~~~i~Y--~~~~~~v~Y~g~~lG~ 129 (203)
.+..+-+.+|.++=||++.+.+ +..+.+++|+|..+--
T Consensus 36 klq~~~~~~v~v~RPdklr~~~~gd~~~~~~~yDGkt~Tl 75 (214)
T PF09865_consen 36 KLQFSSSGTVTVQRPDKLRIDRRGDGADREFYYDGKTFTL 75 (214)
T ss_pred eEEEEEEEEEEEeCCCeEEEEEEcCCcceEEEECCCEEEE
Confidence 3455557899999999988888 6778899999987653
No 19
>PF06919 Phage_T4_Gp30_7: Phage Gp30.7 protein; InterPro: IPR009690 This family consists of several phage Gp30.7 proteins of 121 residues in length. Family members seem to be exclusively from the T4-like viruses. The function of this family is unknown.
Probab=45.16 E-value=50 Score=24.67 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=28.1
Q ss_pred CCCeeEEEE-cCeEEEEEECCEEEeeeeeCCceecCcee
Q 028822 105 NRDVYSVNY-KSLDVSVGYRGRKLGHVKSNHGRVKALAS 142 (203)
Q Consensus 105 NPN~~~i~Y-~~~~~~v~Y~g~~lG~~~~~~~~~~ar~t 142 (203)
|||++=+.| .+.++++.|.|..+--+.-..++..-.+|
T Consensus 40 ~pNYvf~~FEnG~tvsv~~~gs~~kI~~~Dd~r~RDLgT 78 (121)
T PF06919_consen 40 TPNYVFMRFENGITVSVTYNGSIFKIGLDDDHRERDLGT 78 (121)
T ss_pred CCCEEEEEecCCCEEEEEecCcEEEEEecCchhhcccCC
Confidence 999988888 77899999999876665555555544444
No 20
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=43.30 E-value=24 Score=35.19 Aligned_cols=14 Identities=29% Similarity=0.729 Sum_probs=6.5
Q ss_pred EecC---CCeEEEEEEE
Q 028822 66 FWPS---EPELKIERLH 79 (203)
Q Consensus 66 lrP~---~P~~~v~~~~ 79 (203)
|+|+ +|++....++
T Consensus 614 LkpKK~~k~e~~Mrr~n 630 (1102)
T KOG1924|consen 614 LKPKKVYKPEVPMRRFN 630 (1102)
T ss_pred CCccccCCCCCccccCC
Confidence 5565 3444444433
No 21
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=39.92 E-value=52 Score=27.66 Aligned_cols=44 Identities=34% Similarity=0.462 Sum_probs=33.6
Q ss_pred EEEEEECCCeeEEEEcCeEEEEEECCEEEeeeeeCCceecCceeEEEEE
Q 028822 99 VTLKVHNRDVYSVNYKSLDVSVGYRGRKLGHVKSNHGRVKALASSFIDA 147 (203)
Q Consensus 99 ~~v~v~NPN~~~i~Y~~~~~~v~Y~g~~lG~~~~~~~~~~ar~t~~v~~ 147 (203)
..++++||--+-+.+.++++.. +|..++ .....+.++++..+..
T Consensus 165 ~~l~v~Nptpy~vtl~~~~l~~--~~~~~~---~~~~mv~P~s~~~~~l 208 (235)
T COG3121 165 NLLTVKNPTPYYVTLANLTLNV--GGRKLG---LNSGMVAPFSTRQFPL 208 (235)
T ss_pred CEEEEECCCCcEEEEEEEEEee--CceecC---CCcceECCCccceeec
Confidence 3689999999888988888887 777776 4557777777766543
No 22
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=36.19 E-value=33 Score=35.93 Aligned_cols=13 Identities=15% Similarity=0.309 Sum_probs=8.7
Q ss_pred CCCCCCCCCccCC
Q 028822 13 ATPSQPHYYTVLP 25 (203)
Q Consensus 13 ~~~~~~~~y~~~~ 25 (203)
..|+|||+|.|++
T Consensus 10 pppppppg~epps 22 (2365)
T COG5178 10 PPPPPPPGFEPPS 22 (2365)
T ss_pred cccccCCCCCCCC
Confidence 4456667888766
No 23
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=35.62 E-value=9.8 Score=23.00 Aligned_cols=21 Identities=10% Similarity=0.164 Sum_probs=9.8
Q ss_pred chhhHHHHHHHHHHHheeEEE
Q 028822 46 RNWYATIAISLILLAALLYVF 66 (203)
Q Consensus 46 c~~~~~~~lv~~i~~l~~~vl 66 (203)
|.+..+++++++.+++.||++
T Consensus 12 c~l~~llflv~imliif~f~l 32 (43)
T PF11395_consen 12 CFLSFLLFLVIIMLIIFWFSL 32 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444445554
No 24
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=35.41 E-value=1.3e+02 Score=23.17 Aligned_cols=52 Identities=25% Similarity=0.287 Sum_probs=33.3
Q ss_pred EEEEEEEEEEECCCe-eEEEEcCeEEEEEE--CCEEEeeeeeCCceecCceeEEEEEE
Q 028822 94 DISLNVTLKVHNRDV-YSVNYKSLDVSVGY--RGRKLGHVKSNHGRVKALASSFIDAE 148 (203)
Q Consensus 94 n~tl~~~v~v~NPN~-~~i~Y~~~~~~v~Y--~g~~lG~~~~~~~~~~ar~t~~v~~~ 148 (203)
...|+++|++||.+. -++.-...+ +| +|..+-+---.+-.+++.++.++-+.
T Consensus 22 ~~~Lt~tLSiRNtd~~~~i~i~~v~---Yydt~G~lvr~yl~~Pi~L~Pl~t~~~vV~ 76 (125)
T PF11322_consen 22 PFNLTATLSIRNTDPTDPIYITSVD---YYDTDGKLVRSYLDKPIYLKPLATTEFVVE 76 (125)
T ss_pred eEeEEEEEEEEcCCCCCCEEEEEEE---EECCCCeEhHHhcCCCeEcCCCceEEEEEe
Confidence 345577999999874 444433221 34 46666665556788899888877553
No 25
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=33.75 E-value=30 Score=29.22 Aligned_cols=12 Identities=17% Similarity=0.412 Sum_probs=9.4
Q ss_pred HHHHheeEEEec
Q 028822 57 ILLAALLYVFWP 68 (203)
Q Consensus 57 ~i~~l~~~vlrP 68 (203)
++++++|+++||
T Consensus 237 ~~Ia~aW~~yRP 248 (248)
T PF07787_consen 237 LTIALAWLFYRP 248 (248)
T ss_pred HHHHHhheeeCc
Confidence 366778999987
No 26
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=31.39 E-value=24 Score=30.64 Aligned_cols=17 Identities=12% Similarity=0.223 Sum_probs=11.4
Q ss_pred cCCccCCCcchhhHHHH
Q 028822 37 PYYYLENPRRNWYATIA 53 (203)
Q Consensus 37 p~~~r~~~rc~~~~~~~ 53 (203)
|.||||..+|..|++++
T Consensus 250 ~~hqrrt~k~~~~~Lli 266 (283)
T COG5325 250 PAHQRRTKKCRFYLLLI 266 (283)
T ss_pred HHHHhhhccchhhHHHH
Confidence 55677777776666654
No 27
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=29.48 E-value=2.1e+02 Score=20.34 Aligned_cols=55 Identities=13% Similarity=0.171 Sum_probs=33.5
Q ss_pred EEEEEEEEEECCCeeE---EEEcCeEEEEEECCEEEeee--eeCCceecCceeEEEEEEE
Q 028822 95 ISLNVTLKVHNRDVYS---VNYKSLDVSVGYRGRKLGHV--KSNHGRVKALASSFIDAEL 149 (203)
Q Consensus 95 ~tl~~~v~v~NPN~~~---i~Y~~~~~~v~Y~g~~lG~~--~~~~~~~~ar~t~~v~~~l 149 (203)
-.+++.++++||.... +...=....++|.|...... ......++++++..+..++
T Consensus 15 ~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i 74 (107)
T PF00927_consen 15 QDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTI 74 (107)
T ss_dssp SEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE
T ss_pred CCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEE
Confidence 3456788999997433 33333555678888865332 3445778888888776654
No 28
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.41 E-value=35 Score=27.94 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=15.8
Q ss_pred HHHheeEEEecCCCeEEEEEEEE
Q 028822 58 LLAALLYVFWPSEPELKIERLHL 80 (203)
Q Consensus 58 i~~l~~~vlrP~~P~~~v~~~~l 80 (203)
++.++.+++-|+++...+.+.+=
T Consensus 26 ~~~i~~~vlsp~ee~t~~~~a~~ 48 (197)
T COG4698 26 AVLIALFVLSPREEPTHLEDASE 48 (197)
T ss_pred HHHhheeeccCCCCCchhhccCc
Confidence 44456788899997776666554
No 29
>PF11739 DctA-YdbH: Dicarboxylate transport; InterPro: IPR021730 In certain bacterial families this protein is expressed from the ydbH gene, and there is a suggestion that this is a form of DctA or dicarboxylate transport protein. Dicarboxylate transport proteins are found in aerobic bacteria which grow on succinate or other C4-dicarboxylates [].
Probab=28.95 E-value=3.2e+02 Score=22.20 Aligned_cols=81 Identities=19% Similarity=0.220 Sum_probs=44.6
Q ss_pred EEEEEEEEEEECCCeeEEEEcCeEEEEEECCEEEeeeeeCCceecCceeEEEEEEEEEEeeeeccchHHHHHHhcCCeEE
Q 028822 94 DISLNVTLKVHNRDVYSVNYKSLDVSVGYRGRKLGHVKSNHGRVKALASSFIDAELQLKCVKVLSDVVYLLEDLARGTVP 173 (203)
Q Consensus 94 n~tl~~~v~v~NPN~~~i~Y~~~~~~v~Y~g~~lG~~~~~~~~~~ar~t~~v~~~l~~~~~~l~~~~~~l~~D~~~G~v~ 173 (203)
|.++++.+...+++.-.+..++.++.+. +|+ ..++++.++.++. . .+++.+++..+ .++.+.... -.
T Consensus 14 n~~~~~~~~~~~~~~~~l~l~~~s~~l~-gG~----v~~~~~~~~~~~~-~-~~~l~l~~idL----~ell~~~~~--~~ 80 (207)
T PF11739_consen 14 NIRASFQLEAPNSEAGPLRLSNASAELL-GGR----VSLEPLRLPLADK-S-SATLKLENIDL----AELLALQGQ--KG 80 (207)
T ss_pred eeEEEEEEecCCccCCcEEEEEeEEEcc-CCE----EEccceecCcccC-e-EEEEEEcCCCH----HHHHhhcCc--cc
Confidence 3433344444444445566666666663 443 4567788888443 3 77888888766 334443322 22
Q ss_pred EEEEEEEEEEEEEE
Q 028822 174 FDTITKVTGHLGLF 187 (203)
Q Consensus 174 l~~~~~v~gkv~v~ 187 (203)
+..++++.|++=+.
T Consensus 81 ~~~tG~lsG~lPl~ 94 (207)
T PF11739_consen 81 ISATGRLSGRLPLR 94 (207)
T ss_pred eEEEEEEEEEEeEE
Confidence 44456666666554
No 30
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=25.22 E-value=2.9e+02 Score=20.47 Aligned_cols=57 Identities=14% Similarity=0.093 Sum_probs=31.1
Q ss_pred EEeeeeeCCceecCceeEE-EEEEEEEEeeeeccchHHHHHHh-cCCeEEEEEEEEEEEEEEEE
Q 028822 126 KLGHVKSNHGRVKALASSF-IDAELQLKCVKVLSDVVYLLEDL-ARGTVPFDTITKVTGHLGLF 187 (203)
Q Consensus 126 ~lG~~~~~~~~~~ar~t~~-v~~~l~~~~~~l~~~~~~l~~D~-~~G~v~l~~~~~v~gkv~v~ 187 (203)
.+|...+|+..+...++.. ++.++.+... +...++.+++ ....+.+.++++. +++++
T Consensus 2 ~f~~~~lP~~~~~~~~~~~~~~~~l~i~d~---~~f~~f~~~~~~~~~~~l~l~g~~--~~~~g 60 (125)
T PF12505_consen 2 PFATLDLPQIKIKGNGTISIIDQTLTITDQ---DAFTQFVTALLFNEEVTLTLRGKT--DTHLG 60 (125)
T ss_pred ceEEEECCCEEecCCceEEEeeeeEEecCH---HHHHHHHHHHHhCCcEEEEEEEee--eEEEc
Confidence 4678888888883322222 2333333221 1245677776 4555778777664 45555
No 31
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=23.85 E-value=27 Score=23.29 Aligned_cols=8 Identities=25% Similarity=0.194 Sum_probs=3.3
Q ss_pred cchhhHHH
Q 028822 45 RRNWYATI 52 (203)
Q Consensus 45 rc~~~~~~ 52 (203)
+|-+++++
T Consensus 31 rc~~~v~~ 38 (60)
T PF06072_consen 31 RCRLAVAI 38 (60)
T ss_pred HHHHHHHH
Confidence 44334443
No 32
>PF12734 CYSTM: Cysteine-rich TM module stress tolerance
Probab=22.03 E-value=72 Score=19.02 Aligned_cols=7 Identities=29% Similarity=0.415 Sum_probs=3.6
Q ss_pred CCCCCcc
Q 028822 17 QPHYYTV 23 (203)
Q Consensus 17 ~~~~y~~ 23 (203)
||++|.+
T Consensus 2 pp~~Y~~ 8 (37)
T PF12734_consen 2 PPPGYPQ 8 (37)
T ss_pred cCCCCCC
Confidence 4555554
No 33
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=21.93 E-value=37 Score=25.18 Aligned_cols=13 Identities=46% Similarity=0.836 Sum_probs=9.3
Q ss_pred HHHHheeEEEecC
Q 028822 57 ILLAALLYVFWPS 69 (203)
Q Consensus 57 ~i~~l~~~vlrP~ 69 (203)
++++++.|++||+
T Consensus 63 ~~~A~~ly~~RP~ 75 (103)
T PF11027_consen 63 MVLAMALYLLRPS 75 (103)
T ss_pred HHHHHHHHHcCch
Confidence 3555667889998
No 34
>KOG3571 consensus Dishevelled 3 and related proteins [General function prediction only]
Probab=21.18 E-value=3e+02 Score=26.40 Aligned_cols=81 Identities=16% Similarity=0.204 Sum_probs=40.2
Q ss_pred eeEEEEEEEEEEEECCCeeEEEEcC-----eEEEEEECCEEEeeeeeCCceecCceeEEEEEEEEEEeeeeccc-hHHHH
Q 028822 91 ICIDISLNVTLKVHNRDVYSVNYKS-----LDVSVGYRGRKLGHVKSNHGRVKALASSFIDAELQLKCVKVLSD-VVYLL 164 (203)
Q Consensus 91 ~~ln~tl~~~v~v~NPN~~~i~Y~~-----~~~~v~Y~g~~lG~~~~~~~~~~ar~t~~v~~~l~~~~~~l~~~-~~~l~ 164 (203)
..||+ ++++|..+|=|+++|.--+ .+..++-....=|-+..-.|+|.+...-...=+ ++-.....| +...+
T Consensus 246 mslnI-ITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNe--vsFENmSNd~AVrvL 322 (626)
T KOG3571|consen 246 MSLNI-ITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNE--VSFENMSNDQAVRVL 322 (626)
T ss_pred cceeE-EEEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeee--cchhhcCchHHHHHH
Confidence 45676 5788899999998888744 343343222222222223355555433211111 111222233 66777
Q ss_pred HHhcCCeEEE
Q 028822 165 EDLARGTVPF 174 (203)
Q Consensus 165 ~D~~~G~v~l 174 (203)
+|+....-|+
T Consensus 323 REaV~~~gPi 332 (626)
T KOG3571|consen 323 REAVSRPGPI 332 (626)
T ss_pred HHHhccCCCe
Confidence 7775444333
Done!