Query 028822
Match_columns 203
No_of_seqs 155 out of 627
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 04:20:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028822.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028822hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 98.9 2.3E-09 7.9E-14 85.6 8.3 103 69-186 43-147 (174)
2 1xo8_A AT1G01470; structural g 98.8 1.6E-09 5.4E-14 84.6 2.9 103 69-186 20-124 (151)
3 3but_A Uncharacterized protein 98.5 4.4E-06 1.5E-10 63.9 13.4 75 94-171 17-92 (136)
4 2l0d_A Cell surface protein; s 42.4 90 0.0031 22.2 9.8 67 70-148 2-68 (114)
5 2kj1_A BM2 protein; cytoplasmi 30.7 11 0.00038 25.1 0.1 13 96-108 9-21 (89)
6 3idu_A Uncharacterized protein 19.3 2.6E+02 0.0089 20.1 7.3 47 98-149 36-82 (127)
7 1nei_A Hypothetical protein YO 18.6 74 0.0025 20.2 2.2 16 99-114 6-22 (60)
8 2l6w_A Beta-type platelet-deri 22.8 27 0.00091 20.4 0.0 12 63-74 28-39 (39)
9 3me0_B PAPG protein; immunoglo 16.4 2E+02 0.0069 21.1 4.5 33 109-142 65-98 (128)
10 2gcl_A Hypothetical 63.0 kDa p 14.0 1.5E+02 0.005 24.3 3.6 52 65-117 185-237 (261)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=98.94 E-value=2.3e-09 Score=85.55 Aligned_cols=103 Identities=12% Similarity=0.224 Sum_probs=82.7
Q ss_pred CCCeEEEEEEEEeeeecCCCCCeeEEEEEEEEEEEECCCeeEEEEcCeEEEEEECCEEEeeeeeCC-ceecCceeEEEEE
Q 028822 69 SEPELKIERLHLAHFHVRMKPAICIDISLNVTLKVHNRDVYSVNYKSLDVSVGYRGRKLGHVKSNH-GRVKALASSFIDA 147 (203)
Q Consensus 69 ~~P~~~v~~~~l~~~~~~~~~~~~ln~tl~~~v~v~NPN~~~i~Y~~~~~~v~Y~g~~lG~~~~~~-~~~~ar~t~~v~~ 147 (203)
+.|+++++++++.+++.. .++|.+.++|+|||.+.+.+.+++..+.-+|..++++.++. +.+++++++.+.+
T Consensus 43 ~~PeV~v~~v~~~~~~l~-------~~~~~l~LrV~NPN~~pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~g~~~v~V 115 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVTRD-------GVDYHAKVSVKNPYSQSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTVLDV 115 (174)
T ss_dssp CCCEEEEEEEEEEEECSS-------SEEEEEEEEEEECSSSCCBCCSEEEEEEESSSCEEEEEESCCCBCCSSEEEEEEE
T ss_pred CCCEEEEEEeEEeccccc-------eEEEEEEEEEECCCCCCccccceEEEEEECCEEEEEEecCCCceECCCCcEEEEE
Confidence 799999999999988854 25677899999999999999999999999999999998876 9999999999999
Q ss_pred EEEEEeeeeccchHHHHHHhcCC-eEEEEEEEEEEEEEEE
Q 028822 148 ELQLKCVKVLSDVVYLLEDLARG-TVPFDTITKVTGHLGL 186 (203)
Q Consensus 148 ~l~~~~~~l~~~~~~l~~D~~~G-~v~l~~~~~v~gkv~v 186 (203)
.+++.-..+ ..+++|+.++ .++.+ ++|++.+
T Consensus 116 pv~v~~~~l----~~~~~~l~~~~~i~Y~----L~g~L~i 147 (174)
T 1yyc_A 116 PVKVAYSIA----VSLMKDMCTDWDIDYQ----LDIGLTF 147 (174)
T ss_dssp EEEESHHHH----HHTCCCCCSSEEECEE----EEEEEEE
T ss_pred EEEEEHHHH----HHHHHhcCCCCccceE----EEEEEEe
Confidence 888774332 4455666444 35554 4555443
No 2
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=98.81 E-value=1.6e-09 Score=84.64 Aligned_cols=103 Identities=17% Similarity=0.238 Sum_probs=81.7
Q ss_pred CCCeEEEEEEEEeeeecCCCCCeeEEEEEEEEEEEECCCeeEEEEcCeEEEEEECCEEEeeeeeCC-ceecCceeEEEEE
Q 028822 69 SEPELKIERLHLAHFHVRMKPAICIDISLNVTLKVHNRDVYSVNYKSLDVSVGYRGRKLGHVKSNH-GRVKALASSFIDA 147 (203)
Q Consensus 69 ~~P~~~v~~~~l~~~~~~~~~~~~ln~tl~~~v~v~NPN~~~i~Y~~~~~~v~Y~g~~lG~~~~~~-~~~~ar~t~~v~~ 147 (203)
+.|+++++++++.+++.. .++|.+.++|+|||.+++.+.+++..+.-+|..++++.++. +.+++++++.+.+
T Consensus 20 ~~P~v~v~~v~~~~~~~~-------~~~~~~~l~V~NPN~~~lpi~gi~y~l~vng~~lasG~~~~~~~ipa~g~~~v~v 92 (151)
T 1xo8_A 20 PKPEGSVTDVDLKDVNRD-------SVEYLAKVSVTNPYSHSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDMTALDI 92 (151)
T ss_dssp CSCCCBCSEEEECCCTTT-------EECEEEEEEEECSSSSCCCCEEEEEEEESSSSCEEEEEEEECCCCSSSSEEEEEE
T ss_pred CCCEEEEEEeEEeccCcc-------eeEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEecCCCcEECCCCcEEEEE
Confidence 689999999999877643 45678899999999999999999999999999999998765 9999999999998
Q ss_pred EEEEEeeeeccchHHHHHHhc-CCeEEEEEEEEEEEEEEE
Q 028822 148 ELQLKCVKVLSDVVYLLEDLA-RGTVPFDTITKVTGHLGL 186 (203)
Q Consensus 148 ~l~~~~~~l~~~~~~l~~D~~-~G~v~l~~~~~v~gkv~v 186 (203)
.++++-.. ..++.+|+. ++.++.+ ++|++.+
T Consensus 93 pv~v~~~~----l~~~~~~l~~~~~i~Y~----l~g~l~i 124 (151)
T 1xo8_A 93 PVVVPYSI----LFNLARDVGVDWDIDYE----LQIGLTI 124 (151)
T ss_dssp CCCEEHHH----HHHHHHHHHHHSEEEEE----EEEEEEE
T ss_pred EEEEEHHH----HHHHHHhcccCCcccEE----EEEEEEE
Confidence 88777433 345556653 3556664 4555543
No 3
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=98.47 E-value=4.4e-06 Score=63.91 Aligned_cols=75 Identities=17% Similarity=0.238 Sum_probs=62.3
Q ss_pred EEEEEEEEEEECCCeeEEEEcCeEEEEEECCEEEeeee-eCCceecCceeEEEEEEEEEEeeeeccchHHHHHHhcCCe
Q 028822 94 DISLNVTLKVHNRDVYSVNYKSLDVSVGYRGRKLGHVK-SNHGRVKALASSFIDAELQLKCVKVLSDVVYLLEDLARGT 171 (203)
Q Consensus 94 n~tl~~~v~v~NPN~~~i~Y~~~~~~v~Y~g~~lG~~~-~~~~~~~ar~t~~v~~~l~~~~~~l~~~~~~l~~D~~~G~ 171 (203)
...|.+.+++.|||.+.+.+++++..++.+|..+|++. ...+.+++++++.+.+++.++-.++.. .+.+.+.+|.
T Consensus 17 ~t~~~~~l~V~NPN~~~l~i~gl~y~v~lng~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~~l~~---~~~~hi~nge 92 (136)
T 3but_A 17 QTEIVALAKVRNEDVVPIVVSGYHYTIEMNGVKVADGYENSPVTVKPASATTLKFSLRLNNSFLRE---WWVTHIANGE 92 (136)
T ss_dssp EEEEEEEEEEECCSSSCEEEEEEEEEEEETTEEEEEEEECCCEEECTTCEEEEEEEEEEEHHHHTT---HHHHHHHTTS
T ss_pred EEEEEEEEEEeCCCCcceeeeceEEEEEECCEEEEeeeecCceEECCCCcEEEEEEEEEchHHhHH---HHHHHhhcCC
Confidence 35578899999999999999999999999999999997 456999999999999998888666533 3555555663
No 4
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=42.44 E-value=90 Score=22.23 Aligned_cols=67 Identities=16% Similarity=0.122 Sum_probs=39.7
Q ss_pred CCeEEEEEEEEeeeecCCCCCeeEEEEEEEEEEEECCCeeEEEEcCeEEEEEECCEEEeeeeeCCceecCceeEEEEEE
Q 028822 70 EPELKIERLHLAHFHVRMKPAICIDISLNVTLKVHNRDVYSVNYKSLDVSVGYRGRKLGHVKSNHGRVKALASSFIDAE 148 (203)
Q Consensus 70 ~P~~~v~~~~l~~~~~~~~~~~~ln~tl~~~v~v~NPN~~~i~Y~~~~~~v~Y~g~~lG~~~~~~~~~~ar~t~~v~~~ 148 (203)
.|+..+.++.-... .. +-...++++|+|.-... =.++++.++-+|..+|...+++ +.+..++.+.++
T Consensus 2 ~PDL~vt~itP~~~--~~------~~~~ti~atVkN~G~~~--a~~~~V~ly~~g~~v~t~~v~~--LaaG~s~tv~~~ 68 (114)
T 2l0d_A 2 IPDLVPVSLTPVTV--VP------NTVNTMTATIENQGNKD--STSFNVSLLVDGIVVDTQTVTS--LESENSTNVDFH 68 (114)
T ss_dssp CCCEEEEEEECSEE--CT------TSEEEEEEEEEECSSSC--BCCEEEEEEETTEEEEEEEESC--BCBTCEEEEEEE
T ss_pred CCCcEEEeccCCCc--CC------CCeEEEEEEEEECCCCC--CCCEEEEEEECCEEEcceeccc--ccCCCEEEEEEE
Confidence 47777777732221 11 11234577889976422 1567777888999999887665 344445555544
No 5
>2kj1_A BM2 protein; cytoplasmic domain, coiled coil, transport protein; NMR {Influenza b virus}
Probab=30.69 E-value=11 Score=25.14 Aligned_cols=13 Identities=8% Similarity=0.434 Sum_probs=3.6
Q ss_pred EEEEEEEEECCCe
Q 028822 96 SLNVTLKVHNRDV 108 (203)
Q Consensus 96 tl~~~v~v~NPN~ 108 (203)
.+++.++++|||+
T Consensus 9 gv~lki~ir~pnk 21 (89)
T 2kj1_A 9 GVNMKIRIKGPNK 21 (89)
T ss_dssp ---------CCCH
T ss_pred cCceEEEecCCCH
Confidence 3467899999997
No 6
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=19.32 E-value=2.6e+02 Score=20.06 Aligned_cols=47 Identities=15% Similarity=0.082 Sum_probs=33.3
Q ss_pred EEEEEEECCCeeEEEEcCeEEEEEECCEEEeeeeeCCceecCceeEEEEEEE
Q 028822 98 NVTLKVHNRDVYSVNYKSLDVSVGYRGRKLGHVKSNHGRVKALASSFIDAEL 149 (203)
Q Consensus 98 ~~~v~v~NPN~~~i~Y~~~~~~v~Y~g~~lG~~~~~~~~~~ar~t~~v~~~l 149 (203)
.++++|+|--.... ++.++.++-+|..+++..+ .+.+..++.+.++.
T Consensus 36 ti~vtV~N~G~~~a--~~~~V~lyvng~~v~t~~v---~La~G~s~tv~f~~ 82 (127)
T 3idu_A 36 EYEVHVKNLGGIGV--PSTKVRVYINGTLYKNWTV---SLGPKEEKVLTFNW 82 (127)
T ss_dssp EEEEEEEECSSSCE--EEEEEEEEETTEEEEEEEE---EECTTCEEEEEEEE
T ss_pred EEEEEEEECCCCcc--CCcEEEEEECCEEEeeEEe---ccCCCCeEEEEEEE
Confidence 45778888664332 4677888889999988765 37777777776654
No 7
>1nei_A Hypothetical protein YOAG; alpha/beta protein, homodimer, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Escherichia coli} SCOP: d.253.1.1
Probab=18.64 E-value=74 Score=20.16 Aligned_cols=16 Identities=38% Similarity=0.511 Sum_probs=12.1
Q ss_pred EEEEEECCCe-eEEEEc
Q 028822 99 VTLKVHNRDV-YSVNYK 114 (203)
Q Consensus 99 ~~v~v~NPN~-~~i~Y~ 114 (203)
+++++.|.|. +++.++
T Consensus 6 ~~lTvTNnnnGVSVdk~ 22 (60)
T 1nei_A 6 YTVTVTNNSNGVSVDYE 22 (60)
T ss_dssp EEEEEEETTTCCEEEEE
T ss_pred EEEEEEeCCCceEeecc
Confidence 4677888886 888875
No 8
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=22.83 E-value=27 Score=20.44 Aligned_cols=12 Identities=25% Similarity=0.872 Sum_probs=7.5
Q ss_pred eEEEecCCCeEE
Q 028822 63 LYVFWPSEPELK 74 (203)
Q Consensus 63 ~~vlrP~~P~~~ 74 (203)
.++.|=+.|+++
T Consensus 28 Li~~w~qKPrYe 39 (39)
T 2l6w_A 28 LIMLWQKKPRYE 39 (39)
Confidence 344577778763
No 9
>3me0_B PAPG protein; immunoglobulin pilin chaperone, chaperone, fimbrium, immunog domain; HET: MSE; 2.03A {Escherichia coli} PDB: 2wmp_B
Probab=16.35 E-value=2e+02 Score=21.06 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=22.1
Q ss_pred eEEEE-cCeEEEEEECCEEEeeeeeCCceecCcee
Q 028822 109 YSVNY-KSLDVSVGYRGRKLGHVKSNHGRVKALAS 142 (203)
Q Consensus 109 ~~i~Y-~~~~~~v~Y~g~~lG~~~~~~~~~~ar~t 142 (203)
+++-- ++++..++-+|+..|+..+ .+...+.++
T Consensus 65 f~V~L~ngl~S~l~lNG~~~~e~~~-~~~~~~s~t 98 (128)
T 3me0_B 65 FSVGLGHGWDSIVSVNGVDTGETTM-RWYKAGTQN 98 (128)
T ss_dssp CEEEEETTEEEEEEETTBCSSEEEE-EESSSEEEE
T ss_pred eEEecCCCeEEEEEECCeeccceeE-EEEecCCcE
Confidence 44444 5889999999998888776 344433333
No 10
>2gcl_A Hypothetical 63.0 kDa protein in DAK1-ORC1 intergenic region; chromaint, double PH domain, yfact, DNA replication, RPA; 2.21A {Saccharomyces cerevisiae} SCOP: b.55.1.10 PDB: 2gcj_A
Probab=14.02 E-value=1.5e+02 Score=24.35 Aligned_cols=52 Identities=10% Similarity=0.225 Sum_probs=0.0
Q ss_pred EEecCCCeEEEEEEEEeeeecCC-CCCeeEEEEEEEEEEEECCCeeEEEEcCeE
Q 028822 65 VFWPSEPELKIERLHLAHFHVRM-KPAICIDISLNVTLKVHNRDVYSVNYKSLD 117 (203)
Q Consensus 65 vlrP~~P~~~v~~~~l~~~~~~~-~~~~~ln~tl~~~v~v~NPN~~~i~Y~~~~ 117 (203)
+++-+.|-+-+.--.+..++++. +.+...+-+|+++|..+|.| -.+.|.+++
T Consensus 185 flF~~KP~~~i~~~~I~sV~fsrvg~~~~~~rTFdl~v~~k~g~-~~~~Fs~Id 237 (261)
T 2gcl_A 185 FFFLTKPTLYIPFSDVSMVNISRAGQTSTSSRTFDLEVVLRSNR-GSTTFANIS 237 (261)
T ss_dssp EEEESSSCEEEEGGGEEEEEEEC--------CEEEEEEEESTTC-CEEEEEEEE
T ss_pred eEEeeCCcEEEEhhHeeEEEEEeccCCcccCceEEEEEEEcCCC-ccEEEcccC
Done!