Query 028824
Match_columns 203
No_of_seqs 264 out of 2060
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 03:07:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028824.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028824hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2524 Predicted transcriptio 99.4 3.1E-13 6.8E-18 114.0 7.1 109 78-189 167-291 (294)
2 COG3620 Predicted transcriptio 99.4 4.2E-13 9.2E-18 106.0 6.9 106 81-189 63-184 (187)
3 COG3448 CBS-domain-containing 99.3 3.2E-12 7E-17 109.9 6.2 112 77-190 239-373 (382)
4 TIGR03520 GldE gliding motilit 99.2 3.1E-11 6.8E-16 109.4 9.8 110 78-188 186-310 (408)
5 PRK15094 magnesium/cobalt effl 99.2 5.5E-11 1.2E-15 103.4 10.4 113 78-190 62-190 (292)
6 PF00571 CBS: CBS domain CBS d 99.2 3.5E-11 7.5E-16 78.7 6.0 55 85-141 1-55 (57)
7 PRK10892 D-arabinose 5-phospha 99.2 7.2E-11 1.6E-15 103.4 9.4 104 81-184 200-320 (326)
8 COG4109 Predicted transcriptio 99.1 5.1E-11 1.1E-15 104.6 5.9 134 56-192 158-309 (432)
9 cd04608 CBS_pair_PALP_assoc Th 99.1 4.8E-10 1E-14 84.6 9.2 94 94-187 3-123 (124)
10 PRK11543 gutQ D-arabinose 5-ph 99.1 3E-10 6.6E-15 99.1 8.7 101 82-184 196-315 (321)
11 PRK11573 hypothetical protein; 99.1 6.6E-10 1.4E-14 100.9 10.6 112 78-189 182-311 (413)
12 PRK01862 putative voltage-gate 99.1 4E-10 8.7E-15 106.0 9.4 111 78-190 442-572 (574)
13 TIGR01137 cysta_beta cystathio 99.1 8E-10 1.7E-14 100.8 10.0 108 79-188 331-453 (454)
14 COG1253 TlyC Hemolysins and re 99.0 1.9E-09 4.2E-14 98.3 11.8 112 78-189 201-328 (429)
15 cd04618 CBS_pair_5 The CBS dom 99.0 1.8E-09 4E-14 78.4 8.3 85 94-185 2-96 (98)
16 PRK07807 inosine 5-monophospha 99.0 1.1E-09 2.4E-14 101.1 8.7 108 77-189 83-205 (479)
17 cd04603 CBS_pair_KefB_assoc Th 99.0 3.8E-09 8.3E-14 77.5 9.7 92 94-185 2-109 (111)
18 cd04614 CBS_pair_1 The CBS dom 99.0 2.8E-09 6.1E-14 76.9 8.5 85 94-185 2-94 (96)
19 cd04643 CBS_pair_30 The CBS do 99.0 4E-09 8.6E-14 77.2 8.9 92 94-185 2-114 (116)
20 COG2905 Predicted signal-trans 99.0 1.3E-09 2.9E-14 100.5 7.0 108 78-187 144-268 (610)
21 cd04623 CBS_pair_10 The CBS do 99.0 7.6E-09 1.6E-13 75.0 9.7 92 94-185 2-111 (113)
22 cd04641 CBS_pair_28 The CBS do 98.9 8.8E-09 1.9E-13 76.4 9.9 48 94-141 2-49 (120)
23 cd04619 CBS_pair_6 The CBS dom 98.9 6.5E-09 1.4E-13 76.5 9.1 91 95-185 3-112 (114)
24 cd04621 CBS_pair_8 The CBS dom 98.9 6E-09 1.3E-13 79.8 9.0 92 94-185 2-133 (135)
25 cd04630 CBS_pair_17 The CBS do 98.9 8.4E-09 1.8E-13 75.7 9.0 92 94-185 2-112 (114)
26 TIGR00400 mgtE Mg2+ transporte 98.9 8.6E-09 1.9E-13 94.5 10.6 108 78-190 126-253 (449)
27 cd04629 CBS_pair_16 The CBS do 98.9 8.3E-09 1.8E-13 75.2 8.5 92 94-185 2-112 (114)
28 cd04600 CBS_pair_HPP_assoc Thi 98.9 1.1E-08 2.4E-13 75.7 9.1 92 94-185 3-122 (124)
29 cd04586 CBS_pair_BON_assoc Thi 98.9 8.5E-09 1.8E-13 78.1 8.1 92 94-185 3-133 (135)
30 cd04632 CBS_pair_19 The CBS do 98.9 1.2E-08 2.6E-13 76.4 8.7 92 94-185 2-126 (128)
31 cd04640 CBS_pair_27 The CBS do 98.9 1.4E-08 3E-13 76.1 8.9 92 94-185 2-124 (126)
32 cd04605 CBS_pair_MET2_assoc Th 98.9 2.3E-08 5.1E-13 72.5 9.7 91 94-185 3-108 (110)
33 cd04626 CBS_pair_13 The CBS do 98.9 1.5E-08 3.3E-13 73.7 8.7 92 94-185 2-109 (111)
34 cd04593 CBS_pair_EriC_assoc_ba 98.9 1.8E-08 3.8E-13 73.9 9.0 92 94-185 2-113 (115)
35 cd04639 CBS_pair_26 The CBS do 98.9 1.4E-08 3E-13 73.8 8.2 92 94-185 2-109 (111)
36 cd04803 CBS_pair_15 The CBS do 98.9 1.4E-08 3.1E-13 74.9 8.3 92 94-185 2-120 (122)
37 cd04613 CBS_pair_SpoIVFB_EriC_ 98.8 2.1E-08 4.5E-13 72.8 8.6 92 94-185 2-112 (114)
38 cd04609 CBS_pair_PALP_assoc2 T 98.8 2.4E-08 5.3E-13 72.0 8.9 91 94-185 2-108 (110)
39 cd04603 CBS_pair_KefB_assoc Th 98.8 9E-09 2E-13 75.5 6.7 70 68-139 37-110 (111)
40 cd04595 CBS_pair_DHH_polyA_Pol 98.8 3.4E-08 7.4E-13 71.7 9.5 91 94-185 3-108 (110)
41 cd04617 CBS_pair_4 The CBS dom 98.8 2.7E-08 5.9E-13 73.6 9.2 92 94-185 2-116 (118)
42 cd04590 CBS_pair_CorC_HlyC_ass 98.8 2.4E-08 5.2E-13 72.5 8.7 92 94-185 2-109 (111)
43 cd04636 CBS_pair_23 The CBS do 98.8 1.9E-08 4.1E-13 75.9 8.3 92 94-185 2-130 (132)
44 cd04801 CBS_pair_M50_like This 98.8 1.5E-08 3.2E-13 74.2 7.5 92 94-185 2-112 (114)
45 cd04582 CBS_pair_ABC_OpuCA_ass 98.8 3.2E-08 7E-13 71.2 9.1 88 94-185 2-104 (106)
46 cd04615 CBS_pair_2 The CBS dom 98.8 3.4E-08 7.3E-13 72.0 9.0 92 94-185 2-111 (113)
47 cd04631 CBS_pair_18 The CBS do 98.8 2.5E-08 5.4E-13 74.0 8.2 92 94-185 2-123 (125)
48 cd04596 CBS_pair_DRTGG_assoc T 98.8 3.1E-08 6.8E-13 71.9 8.6 89 94-185 3-106 (108)
49 cd04583 CBS_pair_ABC_OpuCA_ass 98.8 4.8E-08 1E-12 70.4 9.5 90 94-185 3-107 (109)
50 cd04627 CBS_pair_14 The CBS do 98.8 4.2E-08 9.1E-13 73.0 9.4 91 94-184 2-120 (123)
51 cd04624 CBS_pair_11 The CBS do 98.8 4.4E-08 9.5E-13 71.2 9.3 92 94-185 2-110 (112)
52 cd04607 CBS_pair_NTP_transfera 98.8 4.2E-08 9E-13 71.7 8.9 92 94-185 3-111 (113)
53 cd04619 CBS_pair_6 The CBS dom 98.8 1.5E-08 3.2E-13 74.6 6.1 70 68-139 37-113 (114)
54 cd04604 CBS_pair_KpsF_GutQ_ass 98.8 3.4E-08 7.3E-13 71.8 7.9 92 94-185 3-112 (114)
55 cd04625 CBS_pair_12 The CBS do 98.8 6.7E-08 1.5E-12 70.2 9.5 91 94-185 2-110 (112)
56 cd04642 CBS_pair_29 The CBS do 98.8 5.9E-08 1.3E-12 72.6 9.4 48 94-141 2-49 (126)
57 TIGR01302 IMP_dehydrog inosine 98.8 3.1E-08 6.7E-13 91.0 9.2 103 83-189 80-201 (450)
58 cd04589 CBS_pair_CAP-ED_DUF294 98.8 7.7E-08 1.7E-12 69.9 9.5 91 94-185 2-109 (111)
59 cd04594 CBS_pair_EriC_assoc_ar 98.8 8.8E-08 1.9E-12 69.3 9.7 85 96-185 4-102 (104)
60 cd04800 CBS_pair_CAP-ED_DUF294 98.8 8E-08 1.7E-12 69.7 9.5 91 94-185 2-109 (111)
61 cd04599 CBS_pair_GGDEF_assoc2 98.8 7.9E-08 1.7E-12 68.9 9.4 88 94-185 2-103 (105)
62 cd04588 CBS_pair_CAP-ED_DUF294 98.8 8.1E-08 1.8E-12 69.6 9.4 91 94-185 2-108 (110)
63 cd04598 CBS_pair_GGDEF_assoc T 98.8 6.8E-08 1.5E-12 71.0 9.0 91 94-185 2-117 (119)
64 COG2524 Predicted transcriptio 98.7 1.9E-08 4E-13 85.3 6.3 72 68-141 215-290 (294)
65 PRK07107 inosine 5-monophospha 98.7 3.8E-08 8.3E-13 91.5 9.1 103 84-187 95-218 (502)
66 TIGR01303 IMP_DH_rel_1 IMP deh 98.7 3.3E-08 7.3E-13 91.3 8.4 106 77-188 82-202 (475)
67 cd04584 CBS_pair_ACT_assoc Thi 98.7 6.9E-08 1.5E-12 71.0 8.4 92 94-185 2-119 (121)
68 cd04585 CBS_pair_ACT_assoc2 Th 98.7 1.2E-07 2.7E-12 69.4 9.6 91 94-185 2-120 (122)
69 cd04635 CBS_pair_22 The CBS do 98.7 6.2E-08 1.3E-12 71.5 7.9 92 94-185 2-120 (122)
70 PRK05567 inosine 5'-monophosph 98.7 7.2E-08 1.6E-12 89.3 9.9 101 84-188 88-204 (486)
71 cd04596 CBS_pair_DRTGG_assoc T 98.7 4E-08 8.8E-13 71.3 6.6 70 68-139 38-107 (108)
72 PLN02274 inosine-5'-monophosph 98.7 8.9E-08 1.9E-12 89.1 10.3 101 86-190 103-223 (505)
73 TIGR00393 kpsF KpsF/GutQ famil 98.7 3.7E-08 8.1E-13 83.6 7.2 97 82-180 154-268 (268)
74 cd04633 CBS_pair_20 The CBS do 98.7 1.4E-07 3E-12 69.5 9.3 91 94-185 2-119 (121)
75 cd04606 CBS_pair_Mg_transporte 98.7 5.3E-08 1.2E-12 70.8 7.0 71 68-140 38-108 (109)
76 cd04587 CBS_pair_CAP-ED_DUF294 98.7 1.6E-07 3.5E-12 68.2 9.4 91 94-185 2-111 (113)
77 cd04612 CBS_pair_SpoIVFB_EriC_ 98.7 1.6E-07 3.4E-12 67.9 9.3 91 94-185 2-109 (111)
78 cd04591 CBS_pair_EriC_assoc_eu 98.7 1.3E-07 2.9E-12 69.0 8.8 84 94-185 3-103 (105)
79 cd04610 CBS_pair_ParBc_assoc T 98.7 7.2E-08 1.6E-12 69.4 7.1 70 68-139 37-106 (107)
80 cd04611 CBS_pair_PAS_GGDEF_DUF 98.7 2E-07 4.2E-12 67.4 9.3 91 94-185 2-109 (111)
81 cd04630 CBS_pair_17 The CBS do 98.7 6.2E-08 1.3E-12 71.0 6.5 69 68-139 38-113 (114)
82 cd04601 CBS_pair_IMPDH This cd 98.7 6.9E-08 1.5E-12 69.7 6.7 90 94-185 3-108 (110)
83 PTZ00314 inosine-5'-monophosph 98.7 7.1E-08 1.5E-12 89.6 8.2 101 85-189 98-218 (495)
84 cd04602 CBS_pair_IMPDH_2 This 98.7 8.3E-08 1.8E-12 70.4 7.0 90 94-185 3-112 (114)
85 cd04622 CBS_pair_9 The CBS dom 98.7 2.7E-07 5.8E-12 67.0 9.6 91 94-185 2-111 (113)
86 cd04802 CBS_pair_3 The CBS dom 98.7 2.8E-07 6E-12 67.0 9.6 91 94-185 2-110 (112)
87 cd04606 CBS_pair_Mg_transporte 98.7 4.8E-08 1E-12 71.0 5.5 86 98-186 2-107 (109)
88 cd04597 CBS_pair_DRTGG_assoc2 98.6 6.6E-08 1.4E-12 71.9 6.1 55 83-139 58-112 (113)
89 cd02205 CBS_pair The CBS domai 98.6 3.3E-07 7.2E-12 65.2 9.5 92 94-185 2-111 (113)
90 COG0517 FOG: CBS domain [Gener 98.6 2.4E-07 5.1E-12 67.6 8.9 95 87-184 3-116 (117)
91 cd04599 CBS_pair_GGDEF_assoc2 98.6 1.1E-07 2.5E-12 68.1 7.1 68 68-138 36-103 (105)
92 cd04620 CBS_pair_7 The CBS dom 98.6 1.5E-07 3.2E-12 68.9 7.7 91 94-185 2-113 (115)
93 cd04637 CBS_pair_24 The CBS do 98.6 1.5E-07 3.3E-12 69.5 7.8 91 94-185 2-120 (122)
94 cd04634 CBS_pair_21 The CBS do 98.6 2.4E-07 5.2E-12 71.3 8.8 47 94-141 2-48 (143)
95 cd04617 CBS_pair_4 The CBS dom 98.6 5.9E-08 1.3E-12 71.8 5.1 72 68-139 37-117 (118)
96 cd04600 CBS_pair_HPP_assoc Thi 98.6 9.6E-08 2.1E-12 70.7 6.2 57 82-140 68-124 (124)
97 COG4535 CorC Putative Mg2+ and 98.6 3.1E-08 6.7E-13 83.2 3.8 109 80-188 64-188 (293)
98 cd04620 CBS_pair_7 The CBS dom 98.6 1E-07 2.2E-12 69.7 6.0 70 68-139 37-114 (115)
99 cd04607 CBS_pair_NTP_transfera 98.6 1.4E-07 3E-12 68.9 6.5 70 68-139 38-112 (113)
100 COG2239 MgtE Mg/Co/Ni transpor 98.6 1.3E-07 2.8E-12 86.7 7.6 108 78-190 127-254 (451)
101 cd04610 CBS_pair_ParBc_assoc T 98.6 5.1E-07 1.1E-11 64.9 9.2 88 94-185 3-105 (107)
102 cd04615 CBS_pair_2 The CBS dom 98.6 1.5E-07 3.2E-12 68.5 6.3 70 68-139 37-112 (113)
103 cd04801 CBS_pair_M50_like This 98.6 9.3E-08 2E-12 69.9 5.0 72 68-139 38-113 (114)
104 cd04638 CBS_pair_25 The CBS do 98.6 6.8E-07 1.5E-11 64.5 9.5 89 94-185 2-104 (106)
105 cd04583 CBS_pair_ABC_OpuCA_ass 98.6 1.7E-07 3.6E-12 67.6 6.2 70 68-139 38-108 (109)
106 COG4536 CorB Putative Mg2+ and 98.6 2.3E-07 5E-12 82.4 8.1 112 77-188 194-323 (423)
107 cd04625 CBS_pair_12 The CBS do 98.6 2.4E-07 5.1E-12 67.3 6.8 69 68-139 36-111 (112)
108 PRK07107 inosine 5-monophospha 98.6 2E-07 4.3E-12 86.8 7.9 74 68-141 144-219 (502)
109 cd04582 CBS_pair_ABC_OpuCA_ass 98.6 2.4E-07 5.3E-12 66.6 6.8 69 68-139 37-105 (106)
110 cd04611 CBS_pair_PAS_GGDEF_DUF 98.5 1.9E-07 4E-12 67.5 6.1 70 68-139 36-110 (111)
111 cd04640 CBS_pair_27 The CBS do 98.5 1.4E-07 3E-12 70.6 5.5 70 68-139 37-125 (126)
112 cd04595 CBS_pair_DHH_polyA_Pol 98.5 2.1E-07 4.6E-12 67.5 5.9 69 68-139 37-109 (110)
113 cd04635 CBS_pair_22 The CBS do 98.5 2.8E-07 6E-12 68.0 6.5 57 81-139 65-121 (122)
114 cd04587 CBS_pair_CAP-ED_DUF294 98.5 2.8E-07 6.1E-12 66.9 6.2 70 68-139 36-112 (113)
115 cd04593 CBS_pair_EriC_assoc_ba 98.5 3.9E-07 8.5E-12 66.7 7.0 70 68-139 37-114 (115)
116 cd04627 CBS_pair_14 The CBS do 98.5 3.3E-07 7.2E-12 68.1 6.6 51 86-138 71-121 (123)
117 PRK07807 inosine 5-monophospha 98.5 2.8E-07 6E-12 85.3 7.4 73 68-142 133-205 (479)
118 TIGR01303 IMP_DH_rel_1 IMP deh 98.5 2.9E-07 6.3E-12 85.1 7.5 73 68-142 131-203 (475)
119 cd04622 CBS_pair_9 The CBS dom 98.5 4.4E-07 9.4E-12 65.9 7.0 70 68-139 36-112 (113)
120 cd04803 CBS_pair_15 The CBS do 98.5 3E-07 6.4E-12 67.8 6.2 57 81-139 65-121 (122)
121 cd04585 CBS_pair_ACT_assoc2 Th 98.5 3E-07 6.6E-12 67.3 6.1 56 82-139 66-121 (122)
122 cd04800 CBS_pair_CAP-ED_DUF294 98.5 3.6E-07 7.7E-12 66.3 6.4 69 68-139 36-110 (111)
123 cd04601 CBS_pair_IMPDH This cd 98.5 5E-07 1.1E-11 65.1 7.0 70 68-139 38-109 (110)
124 cd04629 CBS_pair_16 The CBS do 98.5 3.6E-07 7.9E-12 66.4 6.2 69 68-139 37-113 (114)
125 TIGR00400 mgtE Mg2+ transporte 98.5 3.5E-07 7.5E-12 84.0 7.3 72 68-141 180-251 (449)
126 cd04631 CBS_pair_18 The CBS do 98.5 3E-07 6.5E-12 68.1 5.7 56 82-139 69-124 (125)
127 cd04602 CBS_pair_IMPDH_2 This 98.5 4.2E-07 9.2E-12 66.6 6.4 70 68-139 41-113 (114)
128 cd04639 CBS_pair_26 The CBS do 98.5 3.1E-07 6.7E-12 66.6 5.6 70 68-139 37-110 (111)
129 cd04618 CBS_pair_5 The CBS dom 98.5 4.1E-07 8.8E-12 65.9 6.1 59 68-139 38-97 (98)
130 cd04612 CBS_pair_SpoIVFB_EriC_ 98.5 3.9E-07 8.5E-12 65.8 5.9 70 68-139 36-110 (111)
131 PRK11543 gutQ D-arabinose 5-ph 98.5 4.3E-07 9.2E-12 79.3 7.1 71 68-140 243-318 (321)
132 cd04604 CBS_pair_KpsF_GutQ_ass 98.5 5.9E-07 1.3E-11 65.2 6.7 70 68-139 38-113 (114)
133 cd04586 CBS_pair_BON_assoc Thi 98.4 3.2E-07 6.9E-12 69.4 5.2 56 81-139 79-134 (135)
134 cd04641 CBS_pair_28 The CBS do 98.4 6.1E-07 1.3E-11 66.4 6.6 46 94-139 74-119 (120)
135 cd04613 CBS_pair_SpoIVFB_EriC_ 98.4 6.4E-07 1.4E-11 64.8 6.6 70 68-139 37-113 (114)
136 cd04623 CBS_pair_10 The CBS do 98.4 6.9E-07 1.5E-11 64.6 6.6 69 68-139 37-112 (113)
137 cd04626 CBS_pair_13 The CBS do 98.4 5.5E-07 1.2E-11 65.4 5.9 69 68-139 37-110 (111)
138 cd04621 CBS_pair_8 The CBS dom 98.4 6.1E-07 1.3E-11 68.6 6.4 55 82-139 80-134 (135)
139 PRK10892 D-arabinose 5-phospha 98.4 6.4E-07 1.4E-11 78.5 7.3 70 68-140 248-323 (326)
140 cd04643 CBS_pair_30 The CBS do 98.4 4.1E-07 8.8E-12 66.4 5.1 68 68-139 37-115 (116)
141 cd04594 CBS_pair_EriC_assoc_ar 98.4 8.6E-07 1.9E-11 64.0 6.6 68 68-139 36-103 (104)
142 cd04605 CBS_pair_MET2_assoc Th 98.4 7.8E-07 1.7E-11 64.4 6.4 70 68-139 38-109 (110)
143 cd04608 CBS_pair_PALP_assoc Th 98.4 1.3E-07 2.9E-12 71.2 2.3 71 68-140 38-123 (124)
144 cd04589 CBS_pair_CAP-ED_DUF294 98.4 6.5E-07 1.4E-11 65.0 5.8 69 68-139 36-110 (111)
145 cd04588 CBS_pair_CAP-ED_DUF294 98.4 1.3E-06 2.7E-11 63.2 6.9 70 68-139 36-109 (110)
146 cd04624 CBS_pair_11 The CBS do 98.4 9.1E-07 2E-11 64.2 6.0 70 68-139 37-111 (112)
147 COG0517 FOG: CBS domain [Gener 98.4 9E-07 1.9E-11 64.5 5.9 69 68-138 42-117 (117)
148 COG3448 CBS-domain-containing 98.4 1E-06 2.2E-11 76.4 6.8 76 63-141 285-371 (382)
149 cd04638 CBS_pair_25 The CBS do 98.4 1.5E-06 3.3E-11 62.6 6.9 69 68-139 37-105 (106)
150 cd04802 CBS_pair_3 The CBS dom 98.4 1.3E-06 2.8E-11 63.4 6.5 69 68-139 36-111 (112)
151 cd04584 CBS_pair_ACT_assoc Thi 98.3 1.5E-06 3.2E-11 63.8 6.4 56 81-139 65-120 (121)
152 cd04636 CBS_pair_23 The CBS do 98.3 1.4E-06 3E-11 65.6 6.3 54 83-139 78-131 (132)
153 COG4109 Predicted transcriptio 98.3 1.3E-06 2.8E-11 77.2 6.8 72 68-141 234-305 (432)
154 cd04642 CBS_pair_29 The CBS do 98.3 1.8E-06 3.9E-11 64.5 6.7 51 87-139 75-125 (126)
155 PLN02274 inosine-5'-monophosph 98.3 1.4E-06 3E-11 81.2 7.4 75 68-142 147-222 (505)
156 cd04590 CBS_pair_CorC_HlyC_ass 98.3 1E-06 2.2E-11 63.9 4.9 69 68-139 38-110 (111)
157 cd04633 CBS_pair_20 The CBS do 98.3 1.5E-06 3.2E-11 63.9 5.8 56 81-139 65-120 (121)
158 cd04637 CBS_pair_24 The CBS do 98.3 1.7E-06 3.8E-11 63.8 6.2 55 83-139 67-121 (122)
159 cd04614 CBS_pair_1 The CBS dom 98.3 2.1E-06 4.5E-11 61.7 6.4 45 95-139 51-95 (96)
160 cd04591 CBS_pair_EriC_assoc_eu 98.3 1.2E-06 2.6E-11 63.9 4.9 64 68-139 41-104 (105)
161 PTZ00314 inosine-5'-monophosph 98.3 1.7E-06 3.8E-11 80.4 7.0 74 68-141 143-217 (495)
162 cd04592 CBS_pair_EriC_assoc_eu 98.2 3.4E-06 7.3E-11 64.8 6.8 49 94-142 2-50 (133)
163 smart00116 CBS Domain in cysta 98.2 4.6E-06 1E-10 50.5 5.8 46 95-140 2-47 (49)
164 cd04632 CBS_pair_19 The CBS do 98.2 3.3E-06 7.3E-11 63.0 6.0 56 82-139 70-127 (128)
165 COG2905 Predicted signal-trans 98.2 2.7E-06 5.9E-11 79.0 6.6 73 68-143 193-271 (610)
166 PRK01862 putative voltage-gate 98.2 2.9E-06 6.4E-11 80.0 6.8 72 68-141 491-570 (574)
167 PRK14869 putative manganese-de 98.2 2.8E-06 6E-11 79.6 6.5 59 80-140 243-302 (546)
168 PRK14869 putative manganese-de 98.2 3.5E-06 7.6E-11 79.0 6.6 57 82-140 67-123 (546)
169 TIGR01302 IMP_dehydrog inosine 98.2 4.6E-06 9.9E-11 76.7 7.0 72 68-141 127-200 (450)
170 cd04598 CBS_pair_GGDEF_assoc T 98.2 3.7E-06 8.1E-11 61.6 5.1 70 68-139 37-118 (119)
171 cd04609 CBS_pair_PALP_assoc2 T 98.1 4E-06 8.6E-11 60.2 4.9 68 68-139 36-109 (110)
172 cd02205 CBS_pair The CBS domai 98.1 1.1E-05 2.3E-10 57.3 6.1 53 85-139 60-112 (113)
173 PRK05567 inosine 5'-monophosph 98.0 1.2E-05 2.5E-10 74.7 7.3 72 68-141 131-204 (486)
174 TIGR00393 kpsF KpsF/GutQ famil 98.0 1.4E-05 3E-10 67.8 6.5 64 68-133 200-268 (268)
175 COG2239 MgtE Mg/Co/Ni transpor 98.0 9.3E-06 2E-10 74.6 5.3 71 68-140 181-251 (451)
176 cd04634 CBS_pair_21 The CBS do 98.0 2.5E-05 5.4E-10 59.9 6.7 55 82-139 88-142 (143)
177 PRK15094 magnesium/cobalt effl 97.9 1.7E-05 3.8E-10 69.0 6.2 74 64-141 111-188 (292)
178 KOG1764 5'-AMP-activated prote 97.9 4.1E-05 8.9E-10 69.1 8.3 97 94-190 238-360 (381)
179 TIGR03520 GldE gliding motilit 97.9 3.7E-05 7.9E-10 70.0 7.0 86 50-141 223-310 (408)
180 KOG2550 IMP dehydrogenase/GMP 97.6 8.2E-05 1.8E-09 67.1 5.4 90 49-141 137-227 (503)
181 TIGR01186 proV glycine betaine 97.5 0.00017 3.6E-09 64.8 6.1 72 68-142 286-358 (363)
182 TIGR01137 cysta_beta cystathio 97.5 0.00018 3.8E-09 65.8 6.0 68 68-140 379-452 (454)
183 KOG2550 IMP dehydrogenase/GMP 97.5 0.00011 2.5E-09 66.2 4.5 89 94-184 117-223 (503)
184 COG3620 Predicted transcriptio 97.5 0.00018 3.9E-09 57.4 4.9 83 49-141 94-183 (187)
185 PRK10070 glycine betaine trans 97.4 0.0006 1.3E-08 62.0 8.0 105 83-189 274-393 (400)
186 PRK10070 glycine betaine trans 97.4 0.00036 7.9E-09 63.4 6.4 74 68-144 321-395 (400)
187 PRK11573 hypothetical protein; 97.1 0.0012 2.6E-08 60.3 6.5 82 55-140 222-309 (413)
188 TIGR01186 proV glycine betaine 97.1 0.0028 6E-08 56.9 8.5 94 94-189 251-358 (363)
189 KOG1764 5'-AMP-activated prote 97.1 0.0017 3.6E-08 58.7 7.1 50 93-142 310-359 (381)
190 KOG0474 Cl- channel CLC-7 and 96.7 0.001 2.3E-08 62.9 2.9 60 79-140 578-642 (762)
191 COG1253 TlyC Hemolysins and re 96.4 0.008 1.7E-07 55.0 6.3 76 61-140 247-326 (429)
192 KOG0475 Cl- channel CLC-3 and 96.4 0.0089 1.9E-07 56.7 6.6 56 85-140 545-606 (696)
193 cd04592 CBS_pair_EriC_assoc_eu 96.3 0.0049 1.1E-07 47.1 3.7 32 94-125 87-118 (133)
194 COG4536 CorB Putative Mg2+ and 95.8 0.016 3.4E-07 52.2 4.9 84 55-139 235-321 (423)
195 KOG0474 Cl- channel CLC-7 and 95.6 0.024 5.2E-07 54.0 5.7 57 82-140 689-745 (762)
196 TIGR03415 ABC_choXWV_ATP choli 95.1 0.047 1E-06 49.4 5.7 55 82-141 325-379 (382)
197 COG4535 CorC Putative Mg2+ and 94.8 0.069 1.5E-06 45.5 5.5 82 55-140 102-187 (293)
198 KOG0476 Cl- channel CLC-2 and 93.7 0.086 1.9E-06 51.3 4.4 75 63-140 560-645 (931)
199 KOG0475 Cl- channel CLC-3 and 93.3 0.2 4.2E-06 47.9 6.0 57 81-140 637-693 (696)
200 COG4175 ProV ABC-type proline/ 92.1 0.21 4.6E-06 44.5 4.2 102 81-188 272-382 (386)
201 COG4175 ProV ABC-type proline/ 92.0 0.35 7.5E-06 43.1 5.4 52 88-142 332-383 (386)
202 COG1125 OpuBA ABC-type proline 91.4 0.4 8.7E-06 41.6 5.1 59 81-139 247-307 (309)
203 TIGR03415 ABC_choXWV_ATP choli 89.4 0.5 1.1E-05 42.8 4.3 96 80-188 271-379 (382)
204 PF00571 CBS: CBS domain CBS d 85.2 1 2.2E-05 28.4 2.8 22 167-188 33-55 (57)
205 PF05198 IF3_N: Translation in 58.7 15 0.00033 25.6 3.4 30 116-145 12-41 (76)
206 KOG0476 Cl- channel CLC-2 and 58.3 13 0.00029 36.7 4.1 49 94-143 811-859 (931)
207 PF14827 Cache_3: Sensory doma 52.5 16 0.00034 26.9 2.9 19 117-135 92-110 (116)
208 COG2216 KdpB High-affinity K+ 45.1 37 0.00079 32.5 4.6 38 102-140 413-450 (681)
209 PF13365 Trypsin_2: Trypsin-li 44.9 19 0.00041 25.5 2.3 19 113-131 102-120 (120)
210 KOG2118 Predicted membrane pro 43.4 11 0.00024 35.5 0.9 48 78-125 199-247 (498)
211 PF02743 Cache_1: Cache domain 41.8 37 0.00079 22.9 3.2 17 118-134 18-34 (81)
212 cd02958 UAS UAS family; UAS is 33.6 25 0.00054 25.5 1.4 59 80-140 40-106 (114)
213 PF13673 Acetyltransf_10: Acet 33.0 99 0.0021 21.5 4.5 27 109-135 36-62 (117)
214 PRK00028 infC translation init 30.0 43 0.00093 27.1 2.3 21 102-122 35-55 (177)
215 CHL00199 infC translation init 27.2 52 0.0011 26.9 2.3 24 117-140 25-48 (182)
216 TIGR00168 infC translation ini 27.2 45 0.00098 26.7 2.0 18 103-120 24-41 (165)
217 PF13596 PAS_10: PAS domain; P 27.1 57 0.0012 22.9 2.3 17 116-132 83-99 (106)
218 COG0290 InfC Translation initi 27.0 83 0.0018 25.6 3.4 32 115-146 17-48 (176)
219 PRK12454 carbamate kinase-like 24.6 96 0.0021 27.5 3.7 34 105-138 175-217 (313)
220 PF00944 Peptidase_S3: Alphavi 23.9 68 0.0015 25.2 2.3 21 114-134 105-125 (158)
221 PHA00673 acetyltransferase dom 23.7 1.8E+02 0.0039 23.0 4.8 36 102-137 40-75 (154)
222 PRK10638 glutaredoxin 3; Provi 22.6 1.8E+02 0.0039 19.6 4.2 29 110-140 44-72 (83)
223 smart00594 UAS UAS domain. 22.1 54 0.0012 24.2 1.4 57 80-138 50-118 (122)
224 PF08275 Toprim_N: DNA primase 20.9 82 0.0018 23.8 2.2 18 118-135 80-97 (128)
No 1
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.42 E-value=3.1e-13 Score=113.96 Aligned_cols=109 Identities=24% Similarity=0.280 Sum_probs=89.0
Q ss_pred CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhh-cCCCccccCccCC
Q 028824 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI-SGSGRADNSMFPE 156 (203)
Q Consensus 78 ~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~-~~~~~v~~~m~~~ 156 (203)
......+|.++|++ +++++.+++|+.||+++|.++++++.||+|+ ++++|++|..|+..+... .....++++|.++
T Consensus 167 ~siPk~~V~~~~s~--~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~-dk~vGiit~~dI~~aia~g~~~~kV~~~M~k~ 243 (294)
T COG2524 167 VSIPKEKVKNLMSK--KLITVRPDDTLREAAKLFYEKGIRGAPVVDD-DKIVGIITLSDIAKAIANGNLDAKVSDYMRKN 243 (294)
T ss_pred eecCcchhhhhccC--CceEecCCccHHHHHHHHHHcCccCCceecC-CceEEEEEHHHHHHHHHcCCccccHHHHhccC
Confidence 34567799999999 9999999999999999999999999999996 499999999999987554 3455899999998
Q ss_pred ccch---------HHHH-----hhhceee-CCcEEEEEehhhHHHHHH
Q 028824 157 VDST---------WKVC-----EKCLSFE-NYICLGSLSLKFLTFLLI 189 (203)
Q Consensus 157 v~~~---------~~~~-----~~llv~~-~g~lvGiVt~~DI~~~L~ 189 (203)
+.+. ...+ .++++.+ +|+++|+||++|+++.+.
T Consensus 244 vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 244 VITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA 291 (294)
T ss_pred CceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence 7532 1112 4455554 999999999999966554
No 2
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.41 E-value=4.2e-13 Score=105.99 Aligned_cols=106 Identities=21% Similarity=0.267 Sum_probs=85.3
Q ss_pred CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc----CCCccccCccCC
Q 028824 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS----GSGRADNSMFPE 156 (203)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~----~~~~v~~~m~~~ 156 (203)
..+++..+|+. +++++.+++++.+++++|.+++++.+||+++ |+++|-||+.+|.++.... ....+.++|...
T Consensus 63 ~~ita~~iM~s--pvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM~e~ 139 (187)
T COG3620 63 TRITAKTIMHS--PVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGMESIRSLRVREVMGEP 139 (187)
T ss_pred ceEeHhhhccC--CeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhccccchhhhhHHHHhcCC
Confidence 56788999999 9999999999999999999999999999986 9999999999999875332 334567777665
Q ss_pred ccc-----hHH-------HHhhhceeeCCcEEEEEehhhHHHHHH
Q 028824 157 VDS-----TWK-------VCEKCLSFENYICLGSLSLKFLTFLLI 189 (203)
Q Consensus 157 v~~-----~~~-------~~~~llv~~~g~lvGiVt~~DI~~~L~ 189 (203)
+.. ..+ ....+++.++|+++|+||+.||+..+.
T Consensus 140 fP~Vs~~~~l~vI~~LL~~~~AVlV~e~G~~vGIITk~DI~k~~~ 184 (187)
T COG3620 140 FPTVSPDESLNVISQLLEEHPAVLVVENGKVVGIITKADIMKLLA 184 (187)
T ss_pred CCcCCCCCCHHHHHHHHhhCCeEEEEeCCceEEEEeHHHHHHHHh
Confidence 432 122 224567779999999999999965554
No 3
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.30 E-value=3.2e-12 Score=109.87 Aligned_cols=112 Identities=25% Similarity=0.272 Sum_probs=88.1
Q ss_pred cCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhh--------cCCCc
Q 028824 77 APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI--------SGSGR 148 (203)
Q Consensus 77 ~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~--------~~~~~ 148 (203)
+....+++..|||++ +++++.+++++.+|.+.|.+++++.+||+|++.+++|+||.+|+++.... -....
T Consensus 239 ~R~~~~LtcadIMSr--dVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~ 316 (382)
T COG3448 239 RRRMGELTCADIMSR--DVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLRFLRPPT 316 (382)
T ss_pred HHHhccccHHHhcCc--cceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHHHhhccCCCc
Confidence 455678899999999 99999999999999999999999999999999999999999999973211 13456
Q ss_pred cccCccCCccch------HHH---H-----hhhc-eeeCCcEEEEEehhhHHHHHHH
Q 028824 149 ADNSMFPEVDST------WKV---C-----EKCL-SFENYICLGSLSLKFLTFLLIF 190 (203)
Q Consensus 149 v~~~m~~~v~~~------~~~---~-----~~ll-v~~~g~lvGiVt~~DI~~~L~a 190 (203)
++.+|.+.+.+. .+. + ..++ ++++|+++|+|+.+|++..+..
T Consensus 317 vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r 373 (382)
T COG3448 317 VKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYR 373 (382)
T ss_pred ccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHH
Confidence 888888655321 111 1 2344 4568999999999999655543
No 4
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.25 E-value=3.1e-11 Score=109.39 Aligned_cols=110 Identities=14% Similarity=0.090 Sum_probs=83.5
Q ss_pred CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC-CeEEEEEehHHHhhchhhcCCCccccCccCC
Q 028824 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPE 156 (203)
Q Consensus 78 ~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~-g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~ 156 (203)
-++.+++|+|+|+++.++.+++.+++++++++.+.+++++++||++++ ++++|+|+.+|++..... ......++|.+.
T Consensus 186 l~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~-~~~~l~~~~~~~ 264 (408)
T TIGR03520 186 VSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNK-KNFDWQSLLREP 264 (408)
T ss_pred hccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhcc-CCCCHHHHcCCC
Confidence 567889999999998789999999999999999999999999999864 689999999999864321 122334455442
Q ss_pred c-----c---chHHHHhh------hceeeCCcEEEEEehhhHHHHH
Q 028824 157 V-----D---STWKVCEK------CLSFENYICLGSLSLKFLTFLL 188 (203)
Q Consensus 157 v-----~---~~~~~~~~------llv~~~g~lvGiVt~~DI~~~L 188 (203)
. . ...+.|++ ++++++|.++|+||.+|+++.+
T Consensus 265 ~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileei 310 (408)
T TIGR03520 265 YFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEI 310 (408)
T ss_pred eEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHH
Confidence 1 1 12333321 3456789999999999995555
No 5
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.24 E-value=5.5e-11 Score=103.41 Aligned_cols=113 Identities=21% Similarity=0.238 Sum_probs=84.6
Q ss_pred CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC-CeEEEEEehHHHhhchhhc-CCCccccCccC
Q 028824 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSIS-GSGRADNSMFP 155 (203)
Q Consensus 78 ~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~-g~lvGiVt~~Dll~~~~~~-~~~~v~~~m~~ 155 (203)
..+.+.+|+++|+++.++.+++.+++++++++.+.+++++++||++++ ++++|+|+.+|++...... ....+.++|.+
T Consensus 62 l~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~l~~l~r~ 141 (292)
T PRK15094 62 MDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVLRQ 141 (292)
T ss_pred hccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCCcCCHHHHcCC
Confidence 557888999999987679999999999999999999999999999876 7999999999998643221 12224555654
Q ss_pred Ccc--------chHHHHh-----hh-ceeeCCcEEEEEehhhHHHHHHH
Q 028824 156 EVD--------STWKVCE-----KC-LSFENYICLGSLSLKFLTFLLIF 190 (203)
Q Consensus 156 ~v~--------~~~~~~~-----~l-lv~~~g~lvGiVt~~DI~~~L~a 190 (203)
... ..++.|+ .+ +++++|.++|+||.+|++..+..
T Consensus 142 ~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivG 190 (292)
T PRK15094 142 AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVG 190 (292)
T ss_pred CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhC
Confidence 321 1233332 23 34567999999999999665543
No 6
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=99.21 E-value=3.5e-11 Score=78.74 Aligned_cols=55 Identities=45% Similarity=0.685 Sum_probs=52.0
Q ss_pred cccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824 85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (203)
Q Consensus 85 V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~ 141 (203)
|+++|++ +++++++++++.++++.|.+++++.+||+|++|+++|+||.+||+++.
T Consensus 1 v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l 55 (57)
T PF00571_consen 1 VGDIMTP--PPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKAL 55 (57)
T ss_dssp HHHHSBS--SSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHH
T ss_pred CeECCcC--CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhh
Confidence 5789998 899999999999999999999999999999999999999999999753
No 7
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.20 E-value=7.2e-11 Score=103.41 Aligned_cols=104 Identities=23% Similarity=0.268 Sum_probs=82.2
Q ss_pred CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc---CCCccccCccCCc
Q 028824 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS---GSGRADNSMFPEV 157 (203)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~---~~~~v~~~m~~~v 157 (203)
..++|+|+|++..++.++++++++.+|++.|.+++...+||+|++|+++|+||.+|+.+..... ....+.++|.+++
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im~~~~ 279 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMGIDLRQASIADVMTPGG 279 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcCCCcccCCHHHhcCCCC
Confidence 6778999998533689999999999999999999988888889899999999999998754321 2346778887654
Q ss_pred cc---------hHHHH-----hhhceeeCCcEEEEEehhhH
Q 028824 158 DS---------TWKVC-----EKCLSFENYICLGSLSLKFL 184 (203)
Q Consensus 158 ~~---------~~~~~-----~~llv~~~g~lvGiVt~~DI 184 (203)
.. ..+.+ ..+++.++|+++|+|+..|+
T Consensus 280 ~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~lvGiit~~di 320 (326)
T PRK10892 280 IRVRPGILAVDALNLMQSRHITSVLVADGDHLLGVLHMHDL 320 (326)
T ss_pred EEECCCCCHHHHHHHHHHCCCcEEEEeeCCEEEEEEEhHHh
Confidence 31 12222 45777788999999999999
No 8
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.15 E-value=5.1e-11 Score=104.59 Aligned_cols=134 Identities=23% Similarity=0.305 Sum_probs=106.4
Q ss_pred cccccCCccccccceEecccc---cCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEE
Q 028824 56 VSALRRSSAVFASGTLTANSA---APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132 (203)
Q Consensus 56 ~~~~r~~~~~~~~g~~~~~~l---~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiV 132 (203)
.|..+.++..++..++..+.+ ..+.+-+.|+|+|++.++..++.+++++++..++..+.+.++|||+|+..+++|+|
T Consensus 158 lPvlstsYDTFTVAtmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvV 237 (432)
T COG4109 158 LPVLSTSYDTFTVATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVV 237 (432)
T ss_pred CceEEecccceeHHHHHHHHHHHhhhhhheeeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEE
Confidence 556677778887777766666 34456678999999877899999999999999999999999999999999999999
Q ss_pred ehHHHhhchhhcCCCccccCccCCcc--------------chHHHHhhhcee-eCCcEEEEEehhhHHHHHHHHh
Q 028824 133 SDYDLLALDSISGSGRADNSMFPEVD--------------STWKVCEKCLSF-ENYICLGSLSLKFLTFLLIFVN 192 (203)
Q Consensus 133 t~~Dll~~~~~~~~~~v~~~m~~~v~--------------~~~~~~~~llv~-~~g~lvGiVt~~DI~~~L~a~~ 192 (203)
|.+|+.... ....++.+|..++. ..|+.++-+++. ++.+++|+|+++|+++.|+...
T Consensus 238 t~rDv~~~~---~~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~q 309 (432)
T COG4109 238 TMRDVLDKK---PSTTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMIQ 309 (432)
T ss_pred EehhhhcCC---CCccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHHhc
Confidence 999998643 34567777777542 246666777765 5789999999999966655433
No 9
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.11 E-value=4.8e-10 Score=84.57 Aligned_cols=94 Identities=24% Similarity=0.287 Sum_probs=70.6
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhh---cCCCccccCccCCccc---------hH
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI---SGSGRADNSMFPEVDS---------TW 161 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~---~~~~~v~~~m~~~v~~---------~~ 161 (203)
++.++.+++++.++++.|.+++++.+||+|++|+++|+|+.+|+++.... ....++.++|..++.. ..
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~v~ 82 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQFKRVNKNDTLGKLS 82 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhccceecCCCCCHHHHH
Confidence 68899999999999999999999999999988999999999999864322 2345677888765431 11
Q ss_pred HHH--------------hhhc-eeeCCcEEEEEehhhHHHH
Q 028824 162 KVC--------------EKCL-SFENYICLGSLSLKFLTFL 187 (203)
Q Consensus 162 ~~~--------------~~ll-v~~~g~lvGiVt~~DI~~~ 187 (203)
+.+ ..++ ++++|+++|+||..|++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 83 RILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY 123 (124)
T ss_pred hhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence 111 1122 2356999999999999543
No 10
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.10 E-value=3e-10 Score=99.12 Aligned_cols=101 Identities=17% Similarity=0.137 Sum_probs=79.7
Q ss_pred ccccccccccCCC--eEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhh--cCCCccccCccCCc
Q 028824 82 VYTVGDFMTTKEE--LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI--SGSGRADNSMFPEV 157 (203)
Q Consensus 82 ~~~V~diM~~~~~--~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~--~~~~~v~~~m~~~v 157 (203)
..+|+++|.+ + +.++++++++.+|++.|.+++...+||+|++|+++|+|+..|+.+.... .....+.++|.++.
T Consensus 196 ~~~V~~im~~--~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~~~~~~~v~~im~~~~ 273 (321)
T PRK11543 196 LNKVHHLMRR--DDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGGALTTPVNEAMTRGG 273 (321)
T ss_pred HhHHHHHhcc--CCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCCCCcCCcHHHhcCCCC
Confidence 6789999998 7 9999999999999999999999999999999999999999999865322 22345677777654
Q ss_pred cc---------hHHHH-----hhhceee-CCcEEEEEehhhH
Q 028824 158 DS---------TWKVC-----EKCLSFE-NYICLGSLSLKFL 184 (203)
Q Consensus 158 ~~---------~~~~~-----~~llv~~-~g~lvGiVt~~DI 184 (203)
.. ..+.+ ..++|.+ +|+++|+|+.+|+
T Consensus 274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di 315 (321)
T PRK11543 274 TTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDF 315 (321)
T ss_pred EEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHH
Confidence 21 22222 3456654 6899999999999
No 11
>PRK11573 hypothetical protein; Provisional
Probab=99.09 E-value=6.6e-10 Score=100.94 Aligned_cols=112 Identities=11% Similarity=-0.010 Sum_probs=83.3
Q ss_pred CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC-CeEEEEEehHHHhhchhhcCCCc---cccCc
Q 028824 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGR---ADNSM 153 (203)
Q Consensus 78 ~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~-g~lvGiVt~~Dll~~~~~~~~~~---v~~~m 153 (203)
-++.+.+|+|+|+++.++.+++.+++++++++.+.+++++++||++++ ++++|+|+.+|++.......... ..+++
T Consensus 182 l~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~~~~~~~l~~~~ 261 (413)
T PRK11573 182 LDLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEFTKENMLRAA 261 (413)
T ss_pred hccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccCcCCHHHHHhhc
Confidence 567889999999999999999999999999999999999999999754 78999999999986432211111 11222
Q ss_pred cC-----Cccc---hHHHHhh------hceeeCCcEEEEEehhhHHHHHH
Q 028824 154 FP-----EVDS---TWKVCEK------CLSFENYICLGSLSLKFLTFLLI 189 (203)
Q Consensus 154 ~~-----~v~~---~~~~~~~------llv~~~g~lvGiVt~~DI~~~L~ 189 (203)
.+ +-.. ..+.|++ ++++++|..+|+||.+|+++.+-
T Consensus 262 r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeiv 311 (413)
T PRK11573 262 DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIV 311 (413)
T ss_pred cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHh
Confidence 22 2112 2334422 45678999999999999955443
No 12
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.08 E-value=4e-10 Score=106.01 Aligned_cols=111 Identities=16% Similarity=0.100 Sum_probs=83.2
Q ss_pred CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc---CCCccccCcc
Q 028824 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS---GSGRADNSMF 154 (203)
Q Consensus 78 ~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~---~~~~v~~~m~ 154 (203)
..++.++|+|+|++ ++.++++++++.|+++.|.+++.+.+||+|++|+++|+|+.+|+.+..... ....+.++|.
T Consensus 442 ~~L~~~~V~dim~~--~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~ 519 (574)
T PRK01862 442 ERLRTTQMRELIQP--AQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKRDTTDKTAADYAH 519 (574)
T ss_pred hHHhhCcHHHHhcC--CCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhcccccccchHHHhcc
Confidence 44577899999998 889999999999999999999999999999999999999999998743211 1234566776
Q ss_pred CCcc-----c----hHHHH-----hhhceee-C--CcEEEEEehhhHHHHHHH
Q 028824 155 PEVD-----S----TWKVC-----EKCLSFE-N--YICLGSLSLKFLTFLLIF 190 (203)
Q Consensus 155 ~~v~-----~----~~~~~-----~~llv~~-~--g~lvGiVt~~DI~~~L~a 190 (203)
++.. . ..+.+ +.+++.+ + ++++|+|+++|+++.+.+
T Consensus 520 ~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~ 572 (574)
T PRK01862 520 TPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR 572 (574)
T ss_pred CCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence 5432 1 12222 3355544 3 489999999999655544
No 13
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.06 E-value=8e-10 Score=100.84 Aligned_cols=108 Identities=24% Similarity=0.193 Sum_probs=82.6
Q ss_pred CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc---CCCccccCccC
Q 028824 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS---GSGRADNSMFP 155 (203)
Q Consensus 79 ~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~---~~~~v~~~m~~ 155 (203)
.+..++++++|.+ ++.++.+++++.++++.|.+++++.+||+|++|+++|+|+.+|+++..... ....+.++|.+
T Consensus 331 ~l~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~im~~ 408 (454)
T TIGR01137 331 VLKNATVKDLHLP--APVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGKANPDDAVSKVMSK 408 (454)
T ss_pred HhccCCHHHhCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccCCCcCCCHHHhcCC
Confidence 3677899999998 899999999999999999999999999999889999999999998753321 22346666765
Q ss_pred Ccc---------chHHHH---hhhceeeCCcEEEEEehhhHHHHH
Q 028824 156 EVD---------STWKVC---EKCLSFENYICLGSLSLKFLTFLL 188 (203)
Q Consensus 156 ~v~---------~~~~~~---~~llv~~~g~lvGiVt~~DI~~~L 188 (203)
.+. .....+ ...++.++++++|+||.+|++..|
T Consensus 409 ~~~~v~~~~~l~~a~~~~~~~~~~vV~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 409 KFIQIGEGEKLSDLSKFLEKNSSAIVTEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred CCeEECCcCcHHHHHHHHHHCCeeEEEECCEEEEEEEHHHHHHhh
Confidence 431 111122 234566789999999999995543
No 14
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.05 E-value=1.9e-09 Score=98.28 Aligned_cols=112 Identities=23% Similarity=0.198 Sum_probs=85.9
Q ss_pred CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEe-CCCeEEEEEehHHHhhchhhcCC-Cccc-----
Q 028824 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALDSISGS-GRAD----- 150 (203)
Q Consensus 78 ~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd-~~g~lvGiVt~~Dll~~~~~~~~-~~v~----- 150 (203)
..+++.+|+++|+++.++.+++.+.+++++.+.+.+++++++||++ +.+.++|+|+.+|++........ ....
T Consensus 201 ~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~~~~~~~~~~~ 280 (429)
T COG1253 201 LDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQSDLDLRVLVRP 280 (429)
T ss_pred hccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCccccchhhcccC
Confidence 6788999999999999999999999999999999999999999998 55799999999999976543321 2111
Q ss_pred cCccCCccc---hHHHHhh------hceeeCCcEEEEEehhhHHHHHH
Q 028824 151 NSMFPEVDS---TWKVCEK------CLSFENYICLGSLSLKFLTFLLI 189 (203)
Q Consensus 151 ~~m~~~v~~---~~~~~~~------llv~~~g~lvGiVt~~DI~~~L~ 189 (203)
.+..++... .++.|++ ++++++|.+.|+||.+||++.+-
T Consensus 281 ~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIv 328 (429)
T COG1253 281 PLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIV 328 (429)
T ss_pred CeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHh
Confidence 122222222 3344432 56778999999999999955443
No 15
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.01 E-value=1.8e-09 Score=78.39 Aligned_cols=85 Identities=21% Similarity=0.239 Sum_probs=62.9
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC-CeEEEEEehHHHhhchhhcCCCccccCccCC--ccchHHHH-----h
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPE--VDSTWKVC-----E 165 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~-g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~--v~~~~~~~-----~ 165 (203)
.++++++++++.+|++.|.+++++.+||+|++ |+++|+||..|+.+... -....++ +....+.+ .
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~-------~~~v~~~~~l~~a~~~m~~~~~~ 74 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR-------LVSIHPERSLFDAALLLLKNKIH 74 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee-------eEEeCCCCcHHHHHHHHHHCCCC
Confidence 47899999999999999999999999999974 89999999999986432 0001111 11222222 4
Q ss_pred hhceee-C-CcEEEEEehhhHH
Q 028824 166 KCLSFE-N-YICLGSLSLKFLT 185 (203)
Q Consensus 166 ~llv~~-~-g~lvGiVt~~DI~ 185 (203)
++++.+ + |+++|+|+.+|++
T Consensus 75 ~lpVvd~~~~~~~giit~~d~~ 96 (98)
T cd04618 75 RLPVIDPSTGTGLYILTSRRIL 96 (98)
T ss_pred EeeEEECCCCCceEEeehhhhh
Confidence 466654 4 7999999999993
No 16
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.01 E-value=1.1e-09 Score=101.11 Aligned_cols=108 Identities=18% Similarity=0.198 Sum_probs=84.4
Q ss_pred cCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCccCC
Q 028824 77 APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE 156 (203)
Q Consensus 77 ~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~ 156 (203)
...+..+++.++|.+ ++.++.+++++.++++.|.+++++.+||+|++++++|+||.+|+.... ....+.++|..+
T Consensus 83 ~~~l~~VKv~~iMi~--~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~~---~~~~V~diMt~~ 157 (479)
T PRK07807 83 AEVVAWVKSRDLVFD--TPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGVD---RFTQVRDVMSTD 157 (479)
T ss_pred HHHHhhccccccccc--CCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcCc---cCCCHHHhccCC
Confidence 455677889999998 899999999999999999999999999999999999999999997542 224577778765
Q ss_pred ccc---------hHHHH-----hhhcee-eCCcEEEEEehhhHHHHHH
Q 028824 157 VDS---------TWKVC-----EKCLSF-ENYICLGSLSLKFLTFLLI 189 (203)
Q Consensus 157 v~~---------~~~~~-----~~llv~-~~g~lvGiVt~~DI~~~L~ 189 (203)
+.. ..+.+ ..+++. ++++++|+|+.+|++....
T Consensus 158 ~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~ 205 (479)
T PRK07807 158 LVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATI 205 (479)
T ss_pred ceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence 431 12222 335554 4789999999999965443
No 17
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.00 E-value=3.8e-09 Score=77.51 Aligned_cols=92 Identities=17% Similarity=0.193 Sum_probs=68.5
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc-CCCccccCccCCcc-----c----hHHH
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS-GSGRADNSMFPEVD-----S----TWKV 163 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~-~~~~v~~~m~~~v~-----~----~~~~ 163 (203)
++.++++++++.+|++.|.+++.+.++|+|++|+++|+|+..|+.+..... ....+.++|..... . ....
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~al~~ 81 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGPNDYETLKVCEVYIVPVPIVYCDSKVTDLLRI 81 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhccccccccChhheeecCCcEECCCCcHHHHHHH
Confidence 467899999999999999999999999999889999999999998743221 22346666754432 1 1222
Q ss_pred H-----hhhceee-CCcEEEEEehhhHH
Q 028824 164 C-----EKCLSFE-NYICLGSLSLKFLT 185 (203)
Q Consensus 164 ~-----~~llv~~-~g~lvGiVt~~DI~ 185 (203)
+ ..+++.+ +|+++|+||..|++
T Consensus 82 m~~~~~~~lpVvd~~~~~~Giit~~di~ 109 (111)
T cd04603 82 FRETEPPVVAVVDKEGKLVGTIYERELL 109 (111)
T ss_pred HHHcCCCeEEEEcCCCeEEEEEEhHHhh
Confidence 2 3355554 59999999999994
No 18
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.99 E-value=2.8e-09 Score=76.85 Aligned_cols=85 Identities=25% Similarity=0.273 Sum_probs=63.1
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCccC--CccchHHHH-----hh
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP--EVDSTWKVC-----EK 166 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~--~v~~~~~~~-----~~ 166 (203)
++.++.+++++.+|++.|.+++++.+||+|++|+++|+|+.+|+++... -....+ ......+.+ ..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~-------~~~v~~~~~l~~a~~~m~~~~~~~ 74 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKSE-------VVTATKRTTVSECAQKMKRNRIEQ 74 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCCC-------cEEecCCCCHHHHHHHHHHhCCCe
Confidence 6788999999999999999999999999998899999999999986432 000001 011122222 33
Q ss_pred hceee-CCcEEEEEehhhHH
Q 028824 167 CLSFE-NYICLGSLSLKFLT 185 (203)
Q Consensus 167 llv~~-~g~lvGiVt~~DI~ 185 (203)
+++.+ +|+++|+|+.+|++
T Consensus 75 lpVv~~~~~~~Giit~~di~ 94 (96)
T cd04614 75 IPIINGNDKLIGLLRDHDLL 94 (96)
T ss_pred eeEECCCCcEEEEEEHHHhh
Confidence 55554 48999999999993
No 19
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.97 E-value=4e-09 Score=77.16 Aligned_cols=92 Identities=22% Similarity=0.205 Sum_probs=67.4
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcC--------CCccccCccCCcc-------
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG--------SGRADNSMFPEVD------- 158 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~--------~~~v~~~m~~~v~------- 158 (203)
++.+++.++++.++++.|.+++++.+||+|++|+++|+|+.+|+++...... ...+.++|.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~ 81 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDDAD 81 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcCCCceecCCCC
Confidence 5789999999999999999999999999998899999999999987543211 2334455554321
Q ss_pred --chHHHH---hhhce-eeCCcEEEEEehhhHH
Q 028824 159 --STWKVC---EKCLS-FENYICLGSLSLKFLT 185 (203)
Q Consensus 159 --~~~~~~---~~llv-~~~g~lvGiVt~~DI~ 185 (203)
...+.+ ..+++ +++|+++|+++..|++
T Consensus 82 l~~a~~~~~~~~~~~Vv~~~~~~~Gvit~~dil 114 (116)
T cd04643 82 IEEILHLLIDQPFLPVVDDDGIFIGIITRREIL 114 (116)
T ss_pred HHHHHHHHhcCCceeEEeCCCeEEEEEEHHHhh
Confidence 111222 22444 4578999999999993
No 20
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=98.95 E-value=1.3e-09 Score=100.52 Aligned_cols=108 Identities=22% Similarity=0.260 Sum_probs=90.1
Q ss_pred CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcC---CCccccCcc
Q 028824 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG---SGRADNSMF 154 (203)
Q Consensus 78 ~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~---~~~v~~~m~ 154 (203)
.++-..+|+++|+. ++++|++.+++.+|+..|.+.+++.+.|+++++++.||||.+|+.......+ ..++.++|+
T Consensus 144 ~e~~~trv~~~~~~--~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~~~~V~evmT 221 (610)
T COG2905 144 SEFILTRVGEVKTL--PAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSKTQKVSEVMT 221 (610)
T ss_pred chHHHHHHHHHhcC--CCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCcccchhhhhc
Confidence 34456789999998 8999999999999999999999999999999999999999999997654433 447889999
Q ss_pred CCccch------HH--------HHhhhceeeCCcEEEEEehhhHHHH
Q 028824 155 PEVDST------WK--------VCEKCLSFENYICLGSLSLKFLTFL 187 (203)
Q Consensus 155 ~~v~~~------~~--------~~~~llv~~~g~lvGiVt~~DI~~~ 187 (203)
.++... .+ ...+++|.++|+++|+|+..||+..
T Consensus 222 ~p~~svd~~~~~feAml~m~r~~I~hl~V~e~gq~~Gilt~~dIl~l 268 (610)
T COG2905 222 SPVISVDRGDFLFEAMLMMLRNRIKHLPVTEDGQPLGILTLTDILRL 268 (610)
T ss_pred cCceeecCcchHHHHHHHHHHhCCceeeeecCCeeeEEeeHHHHHHh
Confidence 877532 11 1267899999999999999999443
No 21
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.95 E-value=7.6e-09 Score=75.03 Aligned_cols=92 Identities=24% Similarity=0.338 Sum_probs=68.1
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcC----CCccccCccCCcc---------ch
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG----SGRADNSMFPEVD---------ST 160 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~----~~~v~~~m~~~v~---------~~ 160 (203)
++.+++++.++.++++.|.+++++.+||+|++++++|+++.+|+++...... ...+.++|..... ..
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 81 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVDEA 81 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHHHH
Confidence 5788999999999999999999999999998899999999999986543211 2245555644321 11
Q ss_pred HHHH-----hhhceeeCCcEEEEEehhhHH
Q 028824 161 WKVC-----EKCLSFENYICLGSLSLKFLT 185 (203)
Q Consensus 161 ~~~~-----~~llv~~~g~lvGiVt~~DI~ 185 (203)
.+.+ ..+++.++|+++|+|+..|++
T Consensus 82 l~~~~~~~~~~~~Vv~~~~~~Gvit~~di~ 111 (113)
T cd04623 82 MALMTERRFRHLPVVDGGKLVGIVSIGDVV 111 (113)
T ss_pred HHHHHHcCCCEeEEEeCCEEEEEEEHHHhh
Confidence 2222 235565569999999999993
No 22
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.94 E-value=8.8e-09 Score=76.36 Aligned_cols=48 Identities=29% Similarity=0.693 Sum_probs=44.9
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~ 141 (203)
++.++++++++.+|++.|.+++++.+||+|++|+++|+++.+|++.+.
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~ 49 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLA 49 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHH
Confidence 678999999999999999999999999999899999999999999653
No 23
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.94 E-value=6.5e-09 Score=76.51 Aligned_cols=91 Identities=24% Similarity=0.256 Sum_probs=68.0
Q ss_pred eEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhh----cCCCccccCccCCcc---------chH
Q 028824 95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI----SGSGRADNSMFPEVD---------STW 161 (203)
Q Consensus 95 ~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~----~~~~~v~~~m~~~v~---------~~~ 161 (203)
+.++.+++++.++++.|.+.+...+||+|++|+++|+|+.+|+.+.... .....+.++|..+.. ..+
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~ 82 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLHDVW 82 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCCHHHHH
Confidence 6788999999999999999999999999999999999999999865321 122345556654332 122
Q ss_pred HHH-----hhhceee-CCcEEEEEehhhHH
Q 028824 162 KVC-----EKCLSFE-NYICLGSLSLKFLT 185 (203)
Q Consensus 162 ~~~-----~~llv~~-~g~lvGiVt~~DI~ 185 (203)
+.+ ..+++.+ +|+++|+|+.+|++
T Consensus 83 ~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~ 112 (114)
T cd04619 83 QVMKQRGLKNIPVVDENARPLGVLNARDAL 112 (114)
T ss_pred HHHHHcCCCeEEEECCCCcEEEEEEhHhhc
Confidence 222 3466654 68999999999984
No 24
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.94 E-value=6e-09 Score=79.77 Aligned_cols=92 Identities=17% Similarity=0.202 Sum_probs=69.3
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcC--------------------------CC
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG--------------------------SG 147 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~--------------------------~~ 147 (203)
++.++++++++.++++.|.+.+.+.+||+|++|+++|+|+..|+++...... ..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVPL 81 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccccc
Confidence 6788999999999999999999999999998899999999999997543210 12
Q ss_pred ccccCccCCccc---------hHHHH-----hhhceeeCCcEEEEEehhhHH
Q 028824 148 RADNSMFPEVDS---------TWKVC-----EKCLSFENYICLGSLSLKFLT 185 (203)
Q Consensus 148 ~v~~~m~~~v~~---------~~~~~-----~~llv~~~g~lvGiVt~~DI~ 185 (203)
.+.++|...+.. ....+ ..+++.++|+++|+|+..|++
T Consensus 82 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~Gvit~~di~ 133 (135)
T cd04621 82 VAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDNDNIVGVITKTDIC 133 (135)
T ss_pred cHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeCCEEEEEEEHHHHh
Confidence 455666543321 12222 346666679999999999994
No 25
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.92 E-value=8.4e-09 Score=75.67 Aligned_cols=92 Identities=18% Similarity=0.169 Sum_probs=67.8
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC-CeEEEEEehHHHhhchhhc----CCCccccCccCCcc---------c
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSIS----GSGRADNSMFPEVD---------S 159 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~-g~lvGiVt~~Dll~~~~~~----~~~~v~~~m~~~v~---------~ 159 (203)
++.++.+++++.++++.|.+++++.+||+|++ |+++|+++.+|+++..... ....+.++|..++. .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 81 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIKY 81 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHHH
Confidence 57899999999999999999999999999987 8999999999998743221 11244555644321 1
Q ss_pred hHHHH-----hhhceeeCCcEEEEEehhhHH
Q 028824 160 TWKVC-----EKCLSFENYICLGSLSLKFLT 185 (203)
Q Consensus 160 ~~~~~-----~~llv~~~g~lvGiVt~~DI~ 185 (203)
....+ ..+++.++|+++|+|+..|++
T Consensus 82 ~~~~~~~~~~~~~~Vvd~~~~~Gvi~~~dl~ 112 (114)
T cd04630 82 CARLMERTNIRRAPVVENNELIGIISLTDIF 112 (114)
T ss_pred HHHHHHHcCCCEeeEeeCCEEEEEEEHHHhh
Confidence 22222 235555569999999999993
No 26
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=98.91 E-value=8.6e-09 Score=94.55 Aligned_cols=108 Identities=19% Similarity=0.108 Sum_probs=82.7
Q ss_pred CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHH-----CCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccC
Q 028824 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVE-----KRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 152 (203)
Q Consensus 78 ~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~-----~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~ 152 (203)
..+.+.+++++|++ ++.++++++++.++++.|.+ ++...++|+|++|+++|+|+.+|++... ....++++
T Consensus 126 l~~~e~tvg~iMt~--~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a~---~~~~v~~i 200 (449)
T TIGR00400 126 LSYSDDSAGRIMTI--EYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILAK---PEEILSSI 200 (449)
T ss_pred hCCCcchHHHhCcC--ceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcCC---CCCcHHHH
Confidence 45677899999998 99999999999999999985 4567889999889999999999998642 23456777
Q ss_pred ccCCcc---------chHHHH-----hhhce-eeCCcEEEEEehhhHHHHHHH
Q 028824 153 MFPEVD---------STWKVC-----EKCLS-FENYICLGSLSLKFLTFLLIF 190 (203)
Q Consensus 153 m~~~v~---------~~~~~~-----~~llv-~~~g~lvGiVt~~DI~~~L~a 190 (203)
|.+++. ...+.+ ..++| +++|+++|+|+.+|+++.+..
T Consensus 201 m~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~ 253 (449)
T TIGR00400 201 MRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQS 253 (449)
T ss_pred hCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHh
Confidence 766432 122222 22444 467999999999999777754
No 27
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.91 E-value=8.3e-09 Score=75.22 Aligned_cols=92 Identities=26% Similarity=0.335 Sum_probs=67.9
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhh-----cCCCccccCccCCcc---------c
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI-----SGSGRADNSMFPEVD---------S 159 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~-----~~~~~v~~~m~~~v~---------~ 159 (203)
++.++++++++.++++.|.+++++.+||+|++|+++|+|+..|+++.... .....+.++|..... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 81 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSIVD 81 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcHHH
Confidence 57889999999999999999999999999988999999999999864321 122344455543321 1
Q ss_pred hHHHH-----hhhceeeCCcEEEEEehhhHH
Q 028824 160 TWKVC-----EKCLSFENYICLGSLSLKFLT 185 (203)
Q Consensus 160 ~~~~~-----~~llv~~~g~lvGiVt~~DI~ 185 (203)
..+.+ ..+++.++|+++|+|+.+|++
T Consensus 82 ~~~~~~~~~~~~~~Vv~~~~~~Gvit~~di~ 112 (114)
T cd04629 82 LAQLMLKAKPKRYPVVDDGKLVGQISRRDVL 112 (114)
T ss_pred HHHHHHHhCCCccCEEECCEEEEEEEHHHHh
Confidence 12222 346666669999999999993
No 28
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.90 E-value=1.1e-08 Score=75.73 Aligned_cols=92 Identities=28% Similarity=0.416 Sum_probs=67.7
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcC-------------CCccccCccCCcc--
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG-------------SGRADNSMFPEVD-- 158 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~-------------~~~v~~~m~~~v~-- 158 (203)
++.++.++.++.++.+.|.+++++.+||+|++|+++|+|+..||+....... ...+.++|.....
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 82 (124)
T cd04600 3 DVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPVVTV 82 (124)
T ss_pred CcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccCCCeee
Confidence 6889999999999999999999999999998899999999999986533211 1134455544322
Q ss_pred -------chHHHH-----hhhcee-eCCcEEEEEehhhHH
Q 028824 159 -------STWKVC-----EKCLSF-ENYICLGSLSLKFLT 185 (203)
Q Consensus 159 -------~~~~~~-----~~llv~-~~g~lvGiVt~~DI~ 185 (203)
...+.+ ..+++. ++|+++|+|+..|++
T Consensus 83 ~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~ 122 (124)
T cd04600 83 RPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLI 122 (124)
T ss_pred CCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhh
Confidence 122223 235554 489999999999993
No 29
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.88 E-value=8.5e-09 Score=78.10 Aligned_cols=92 Identities=29% Similarity=0.420 Sum_probs=67.7
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhh-------------------------cCCCc
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI-------------------------SGSGR 148 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~-------------------------~~~~~ 148 (203)
++.++.+++++.++++.|.++++..+||+|++|+++|+|+..|+.+.... .....
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (135)
T cd04586 3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGRK 82 (135)
T ss_pred CCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCCC
Confidence 67889999999999999999999999999988999999999999864211 11223
Q ss_pred cccCccCCcc---------chHHHH-----hhhceeeCCcEEEEEehhhHH
Q 028824 149 ADNSMFPEVD---------STWKVC-----EKCLSFENYICLGSLSLKFLT 185 (203)
Q Consensus 149 v~~~m~~~v~---------~~~~~~-----~~llv~~~g~lvGiVt~~DI~ 185 (203)
+.++|.+... ...+.+ ..+++.++|+++|+|+..|++
T Consensus 83 v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd~g~~~Gvit~~di~ 133 (135)
T cd04586 83 VADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVRGGRLVGIVSRADLL 133 (135)
T ss_pred HHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEecCCEEEEEEEhHhhh
Confidence 4445543221 122222 346665689999999999983
No 30
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.88 E-value=1.2e-08 Score=76.39 Aligned_cols=92 Identities=22% Similarity=0.277 Sum_probs=66.3
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhh----------------cCCCccccCccCCc
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI----------------SGSGRADNSMFPEV 157 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~----------------~~~~~v~~~m~~~v 157 (203)
++.++.+++++.++++.|.+.+++.+||+|++|+++|+|+..|+.++... .....+.++|..+.
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSSPV 81 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcCCC
Confidence 57889999999999999999999999999988999999999999854211 01123445564432
Q ss_pred c-----c----hHHHH-----hhhceee---CCcEEEEEehhhHH
Q 028824 158 D-----S----TWKVC-----EKCLSFE---NYICLGSLSLKFLT 185 (203)
Q Consensus 158 ~-----~----~~~~~-----~~llv~~---~g~lvGiVt~~DI~ 185 (203)
. . ..+.+ ..+++.+ +|+++|+|+.+|++
T Consensus 82 ~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~ 126 (128)
T cd04632 82 ITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVL 126 (128)
T ss_pred ceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhh
Confidence 2 1 11212 2345543 49999999999984
No 31
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.87 E-value=1.4e-08 Score=76.15 Aligned_cols=92 Identities=22% Similarity=0.342 Sum_probs=66.6
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch-----h----hcCCCccccCccCCcc------
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD-----S----ISGSGRADNSMFPEVD------ 158 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~-----~----~~~~~~v~~~m~~~v~------ 158 (203)
++.++..++++.++++.|.+++...+||+|++|+++|+|+.+|+.+.. . ......+.++|.+...
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~ 81 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKALDL 81 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccccH
Confidence 467899999999999999999999999999889999999999998521 1 1122345666654211
Q ss_pred ---------chHHHH-----hhhceee-C-CcEEEEEehhhHH
Q 028824 159 ---------STWKVC-----EKCLSFE-N-YICLGSLSLKFLT 185 (203)
Q Consensus 159 ---------~~~~~~-----~~llv~~-~-g~lvGiVt~~DI~ 185 (203)
..++.+ ..+++.+ + |+++|+|+..|++
T Consensus 82 ~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~ 124 (126)
T cd04640 82 EELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIA 124 (126)
T ss_pred HHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHh
Confidence 112222 2355554 3 6999999999994
No 32
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.87 E-value=2.3e-08 Score=72.46 Aligned_cols=91 Identities=18% Similarity=0.307 Sum_probs=66.4
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCccCCcc-----c----hHHHH
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD-----S----TWKVC 164 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v~-----~----~~~~~ 164 (203)
++.++.+++++.++++.|.++++..+||+|++|+++|+|+.+|+++..... ...+.++|..... . ..+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~-~~~~~~~~~~~~~~v~~~~~l~~~~~~~ 81 (110)
T cd04605 3 PVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARD-KKSVEDIMTRNVITATPDEPIDVAARKM 81 (110)
T ss_pred CCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhC-ccCHHHhcCCCCeEECCCCcHHHHHHHH
Confidence 678899999999999999999999999999889999999999998653322 1234455533321 1 11222
Q ss_pred -----hhhc-eeeCCcEEEEEehhhHH
Q 028824 165 -----EKCL-SFENYICLGSLSLKFLT 185 (203)
Q Consensus 165 -----~~ll-v~~~g~lvGiVt~~DI~ 185 (203)
..++ ++++|+++|+|+..|+.
T Consensus 82 ~~~~~~~~~Vv~~~~~~~G~v~~~di~ 108 (110)
T cd04605 82 ERHNISALPVVDAENRVIGIITSEDIS 108 (110)
T ss_pred HHhCCCEEeEECCCCcEEEEEEHHHhh
Confidence 1233 44578999999999983
No 33
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.87 E-value=1.5e-08 Score=73.68 Aligned_cols=92 Identities=18% Similarity=0.230 Sum_probs=67.9
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc--CCCccccCccCCcc-----c----hHH
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS--GSGRADNSMFPEVD-----S----TWK 162 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~--~~~~v~~~m~~~v~-----~----~~~ 162 (203)
++.++++++++.++++.|.+++++.+||+|++|+++|+++.+|++...... ....+.++|..... . ..+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~ 81 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFESFLEKKVFNIVSQDVFYVNEEDTIDEALD 81 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhcccccCcHHHHhcCCcEEEcCCCcHHHHHH
Confidence 578899999999999999999999999999889999999999998653321 12234455544332 1 222
Q ss_pred HH-----hhhceeeCCcEEEEEehhhHH
Q 028824 163 VC-----EKCLSFENYICLGSLSLKFLT 185 (203)
Q Consensus 163 ~~-----~~llv~~~g~lvGiVt~~DI~ 185 (203)
.+ ..+++.++|+++|+|+..|++
T Consensus 82 ~~~~~~~~~~~Vv~~~~~~G~it~~di~ 109 (111)
T cd04626 82 IMREKQIGRLPVVDDNKLIGVVRTKDIL 109 (111)
T ss_pred HHHHcCCCeeeEeECCEEEEEEEhHHhc
Confidence 22 335565569999999999983
No 34
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=98.86 E-value=1.8e-08 Score=73.94 Aligned_cols=92 Identities=23% Similarity=0.207 Sum_probs=66.7
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcC---CCccccCccCCcc-----c----hH
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG---SGRADNSMFPEVD-----S----TW 161 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~---~~~v~~~m~~~v~-----~----~~ 161 (203)
++.++.+++++.++++.|.+.+++.+||+|++|+++|+++.+||++...... ...+.++|..... . ..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~l 81 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADEAGEPSAVDEVATPPLLTVHPDEPLAHAL 81 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhcccccccccHHHhccCCceEECCCCCHHHHH
Confidence 5678899999999999999999999999998899999999999987543211 1124455544322 1 22
Q ss_pred HHH-----hhhcee-eC--CcEEEEEehhhHH
Q 028824 162 KVC-----EKCLSF-EN--YICLGSLSLKFLT 185 (203)
Q Consensus 162 ~~~-----~~llv~-~~--g~lvGiVt~~DI~ 185 (203)
+.+ ..+++. ++ |+++|+|+..|++
T Consensus 82 ~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~ 113 (115)
T cd04593 82 DRMASRGLRQLPVVDRGNPGQVLGLLTRENVL 113 (115)
T ss_pred HHHHHcCCceeeEEeCCCCCeEEEEEEhHHhh
Confidence 222 235554 44 7999999999994
No 35
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.86 E-value=1.4e-08 Score=73.79 Aligned_cols=92 Identities=21% Similarity=0.321 Sum_probs=67.4
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhh-cCCCccccCccCCcc---------chHHH
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI-SGSGRADNSMFPEVD---------STWKV 163 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~-~~~~~v~~~m~~~v~---------~~~~~ 163 (203)
++.++.+++++.++++.|.+.+...+||+|++|+++|+|+..|+.+.... .....+.++|..... ...+.
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~~ 81 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEGGPDAPVRGVMRRDFPTVSPSATLDAVLRL 81 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhcCCCCcHHHHhcCCCcEECCCCcHHHHHHH
Confidence 57889999999999999998899999999988999999999999875322 122345555544322 12222
Q ss_pred H-----hhhceee-CCcEEEEEehhhHH
Q 028824 164 C-----EKCLSFE-NYICLGSLSLKFLT 185 (203)
Q Consensus 164 ~-----~~llv~~-~g~lvGiVt~~DI~ 185 (203)
+ ..+++.+ +|+++|+++..|+.
T Consensus 82 ~~~~~~~~~~Vv~~~~~~~G~it~~dl~ 109 (111)
T cd04639 82 MQQGGAPAVPVVDGSGRLVGLVTLENVG 109 (111)
T ss_pred HHhcCCceeeEEcCCCCEEEEEEHHHhh
Confidence 2 2355544 49999999999984
No 36
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.85 E-value=1.4e-08 Score=74.92 Aligned_cols=92 Identities=22% Similarity=0.266 Sum_probs=66.8
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc------------CCCccccCccCCcc---
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS------------GSGRADNSMFPEVD--- 158 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~------------~~~~v~~~m~~~v~--- 158 (203)
++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+++..... ....+.++|..+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~ 81 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVLTVT 81 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCCCCeEeC
Confidence 578899999999999999999999999999889999999999998753221 12234445543321
Q ss_pred --c----hHHHH-----hhhceee-CCcEEEEEehhhHH
Q 028824 159 --S----TWKVC-----EKCLSFE-NYICLGSLSLKFLT 185 (203)
Q Consensus 159 --~----~~~~~-----~~llv~~-~g~lvGiVt~~DI~ 185 (203)
. ..+.+ ..+++.+ +|+++|+++..|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~ 120 (122)
T cd04803 82 PDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFL 120 (122)
T ss_pred CCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhh
Confidence 1 12222 2345544 48999999999994
No 37
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=98.84 E-value=2.1e-08 Score=72.82 Aligned_cols=92 Identities=26% Similarity=0.258 Sum_probs=67.8
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcC---CCccccCccCCcc-----c----hH
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG---SGRADNSMFPEVD-----S----TW 161 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~---~~~v~~~m~~~v~-----~----~~ 161 (203)
++.++.+++++.++++.|.+.++..+||+|++|+++|+|+..|+++...... ...+.++|.+... . ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~ 81 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPSLYDLVVASDIMTKPPVVVYPEDSLEDAL 81 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhcccccccEEHHHhccCCCcEEcCCCCHHHHH
Confidence 6788999999999999999999999999998899999999999986533211 1345555654332 1 12
Q ss_pred HHH-----hhhceee--CCcEEEEEehhhHH
Q 028824 162 KVC-----EKCLSFE--NYICLGSLSLKFLT 185 (203)
Q Consensus 162 ~~~-----~~llv~~--~g~lvGiVt~~DI~ 185 (203)
+.+ ..+++.+ +++++|+++..|++
T Consensus 82 ~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~ 112 (114)
T cd04613 82 KKFEDSDYEQLPVVDDDPGKLLGILSRSDLL 112 (114)
T ss_pred HHHhhCCccEeeEEeCCCCEEEEEEEhHHhh
Confidence 222 2355544 48999999999984
No 38
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=98.84 E-value=2.4e-08 Score=71.99 Aligned_cols=91 Identities=23% Similarity=0.245 Sum_probs=65.8
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcC---CCccccCccCCcc-----c----hH
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG---SGRADNSMFPEVD-----S----TW 161 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~---~~~v~~~m~~~v~-----~----~~ 161 (203)
++.++++++++.++++.|.+++++.+||+|+ |+++|+++..|+.+...... ...+.++|..... . ..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~ 80 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGKAKFSLPVREVMGEPLPTVDPDAPIEELS 80 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhccccccCcCHHHHhcCCCceeCCCCcHHHHH
Confidence 5788999999999999999999999999997 99999999999997633211 1234444543321 1 11
Q ss_pred HHHh---h-hceeeCCcEEEEEehhhHH
Q 028824 162 KVCE---K-CLSFENYICLGSLSLKFLT 185 (203)
Q Consensus 162 ~~~~---~-llv~~~g~lvGiVt~~DI~ 185 (203)
..++ . .+++++|+++|+|+.+|++
T Consensus 81 ~~~~~~~~~~vv~~~~~~~Gvvt~~di~ 108 (110)
T cd04609 81 ELLDRGNVAVVVDEGGKFVGIITRADLL 108 (110)
T ss_pred HHHHhCCceeEEecCCeEEEEEeHHHhh
Confidence 2222 2 3345679999999999994
No 39
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.84 E-value=9e-09 Score=75.50 Aligned_cols=70 Identities=23% Similarity=0.281 Sum_probs=59.6
Q ss_pred cceEecccccCC----CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 68 SGTLTANSAAPS----SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 68 ~g~~~~~~l~~~----~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
.|.++..++... ....++.++|.. ++.++.+++++.+|++.|.+++.+.+||+|++|+++|+||.+|+++
T Consensus 37 ~G~v~~~dl~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 37 LGQVTLSDLLEIGPNDYETLKVCEVYIV--PVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred EEEEEHHHHHhhccccccccChhheeec--CCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 577877775321 123469999987 7899999999999999999999999999998899999999999975
No 40
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.83 E-value=3.4e-08 Score=71.72 Aligned_cols=91 Identities=22% Similarity=0.309 Sum_probs=67.9
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc-CCCccccCccCCcc---------chHHH
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS-GSGRADNSMFPEVD---------STWKV 163 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~-~~~~v~~~m~~~v~---------~~~~~ 163 (203)
++.+++.+.++.++.+.|.+.++..+||+|+ |+++|+|+..|+.+..... ....+.++|..... .....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~ 81 (110)
T cd04595 3 PVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALRHGLGHAPVKDYMSTDVVTVPPDTPLSEVQEL 81 (110)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHhcccccCcHHHHhcCCCEEECCCCcHHHHHHH
Confidence 6789999999999999999999999999998 9999999999998654221 22345555654332 12222
Q ss_pred H-----hhhceeeCCcEEEEEehhhHH
Q 028824 164 C-----EKCLSFENYICLGSLSLKFLT 185 (203)
Q Consensus 164 ~-----~~llv~~~g~lvGiVt~~DI~ 185 (203)
+ ..+++.++|+++|+|+..|++
T Consensus 82 ~~~~~~~~~~V~~~~~~~Gvvt~~di~ 108 (110)
T cd04595 82 MVEHDIGRVPVVEDGRLVGIVTRTDLL 108 (110)
T ss_pred HHHcCCCeeEEEeCCEEEEEEEhHHhh
Confidence 2 335565689999999999984
No 41
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.83 E-value=2.7e-08 Score=73.59 Aligned_cols=92 Identities=24% Similarity=0.224 Sum_probs=67.0
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc---CCCccccCccC--Ccc---------c
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS---GSGRADNSMFP--EVD---------S 159 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~---~~~~v~~~m~~--~v~---------~ 159 (203)
++.++++++++.++++.|.++++..+||+|++|+++|+|+..|+.+..... ....+.++|.. .+. .
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~ 81 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESVLE 81 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCCCcHHH
Confidence 578899999999999999999999999999889999999999998754321 12334455542 211 1
Q ss_pred hHHHH-----hhhceee-C---CcEEEEEehhhHH
Q 028824 160 TWKVC-----EKCLSFE-N---YICLGSLSLKFLT 185 (203)
Q Consensus 160 ~~~~~-----~~llv~~-~---g~lvGiVt~~DI~ 185 (203)
.++.+ ..+++.+ + |+++|+|+..|++
T Consensus 82 ~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~ 116 (118)
T cd04617 82 AAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNIT 116 (118)
T ss_pred HHHHHHHcCCCEeeEEeCCCccceEEEEEEhhhee
Confidence 22223 3356654 4 5999999999983
No 42
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=98.83 E-value=2.4e-08 Score=72.50 Aligned_cols=92 Identities=21% Similarity=0.268 Sum_probs=65.6
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC-CeEEEEEehHHHhhchhhcCC-CccccCccCCc----c----chHHH
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGS-GRADNSMFPEV----D----STWKV 163 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~-g~lvGiVt~~Dll~~~~~~~~-~~v~~~m~~~v----~----~~~~~ 163 (203)
++.++++++++.++++.|.+.+++.+||+|++ |+++|+++..|+++....... ..+..++.+.. . ...+.
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~ 81 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEEDLDLRDLLRPPLFVPESTPLDDLLEE 81 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCCcCCHHHHhcCCeecCCCCcHHHHHHH
Confidence 57889999999999999999999999999988 999999999999976432211 12333333211 1 11222
Q ss_pred H-----hhhcee-eCCcEEEEEehhhHH
Q 028824 164 C-----EKCLSF-ENYICLGSLSLKFLT 185 (203)
Q Consensus 164 ~-----~~llv~-~~g~lvGiVt~~DI~ 185 (203)
+ ..+++. ++|+++|+|+..|++
T Consensus 82 ~~~~~~~~~~Vv~~~~~~~Gvit~~di~ 109 (111)
T cd04590 82 MRKERSHMAIVVDEYGGTAGLVTLEDIL 109 (111)
T ss_pred HHhcCCcEEEEEECCCCEEEEeEHHHhh
Confidence 2 234444 569999999999983
No 43
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.83 E-value=1.9e-08 Score=75.92 Aligned_cols=92 Identities=23% Similarity=0.345 Sum_probs=67.1
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcC---C--------------------Cccc
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG---S--------------------GRAD 150 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~---~--------------------~~v~ 150 (203)
++.++.+++++.++++.|.+.+++.+||+|++|+++|+|+..|+++...... . ..+.
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKVE 81 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCHH
Confidence 5788999999999999999999999999998899999999999986543211 0 0334
Q ss_pred cCccCCcc-----c----hHHHH-----hhhceeeCCcEEEEEehhhHH
Q 028824 151 NSMFPEVD-----S----TWKVC-----EKCLSFENYICLGSLSLKFLT 185 (203)
Q Consensus 151 ~~m~~~v~-----~----~~~~~-----~~llv~~~g~lvGiVt~~DI~ 185 (203)
++|.++.. . ....+ ..+++.++|+++|+++..|++
T Consensus 82 ~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~iGvit~~dl~ 130 (132)
T cd04636 82 EIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDDGKLVGIISRGDII 130 (132)
T ss_pred HhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEECCEEEEEEEHHHhh
Confidence 44544321 1 11222 235665569999999999994
No 44
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.83 E-value=1.5e-08 Score=74.21 Aligned_cols=92 Identities=21% Similarity=0.244 Sum_probs=66.6
Q ss_pred CeEEEcCCCCHHHHHHHHHHCC-CcEEEEEeCCCeEEEEEehHHHhhchhhc-CCCccccCccCC--c-----c----ch
Q 028824 94 ELHVVKPTTTVDEALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLALDSIS-GSGRADNSMFPE--V-----D----ST 160 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~-~~~lPVvd~~g~lvGiVt~~Dll~~~~~~-~~~~v~~~m~~~--v-----~----~~ 160 (203)
++.++++++++.++++.|.+++ .+.+||+|++|+++|+|+.+|+++..... ....+.++|.+. . . ..
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~a 81 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQWAQTTVIQVMTPAAKLVTVLSEESLAEV 81 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHhhccccchhhhhcccccceEECCCCcHHHH
Confidence 6788999999999999997775 88999999889999999999999764321 223455666431 1 1 12
Q ss_pred HHHH-----hhhceee-CCcEEEEEehhhHH
Q 028824 161 WKVC-----EKCLSFE-NYICLGSLSLKFLT 185 (203)
Q Consensus 161 ~~~~-----~~llv~~-~g~lvGiVt~~DI~ 185 (203)
.+.+ ..+++.+ +|+++|+++.+|++
T Consensus 82 ~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~ 112 (114)
T cd04801 82 LKLLEEQGLDELAVVEDSGQVIGLITEADLL 112 (114)
T ss_pred HHHHHHCCCCeeEEEcCCCcEEEEEecccee
Confidence 2222 2355554 58999999999983
No 45
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=98.83 E-value=3.2e-08 Score=71.25 Aligned_cols=88 Identities=16% Similarity=0.208 Sum_probs=64.8
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCccCCcc---------chHHHH
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD---------STWKVC 164 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v~---------~~~~~~ 164 (203)
++.+++++.++.+|++.|.+++.+.+||+|++|+++|+++..|+++... ..+.++|.+... ...+.+
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARASG----GCCGDHAEPFKVTVSVDDDLRIVLSRM 77 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhcc----cchhhhcccCCEEECCCCCHHHHHHHH
Confidence 5778999999999999999999999999998899999999999986432 123444443321 122222
Q ss_pred -----hhhce-eeCCcEEEEEehhhHH
Q 028824 165 -----EKCLS-FENYICLGSLSLKFLT 185 (203)
Q Consensus 165 -----~~llv-~~~g~lvGiVt~~DI~ 185 (203)
..+++ +++|+++|+|+..+++
T Consensus 78 ~~~~~~~~~Vv~~~~~~~Gvi~~~~l~ 104 (106)
T cd04582 78 FAHDMSWLPCVDEDGRYVGEVTQRSIA 104 (106)
T ss_pred HHCCCCeeeEECCCCcEEEEEEHHHhh
Confidence 22444 4568999999999984
No 46
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.81 E-value=3.4e-08 Score=71.96 Aligned_cols=92 Identities=18% Similarity=0.209 Sum_probs=66.3
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc---CCCccccCccCCcc-----c----hH
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS---GSGRADNSMFPEVD-----S----TW 161 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~---~~~~v~~~m~~~v~-----~----~~ 161 (203)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+|+.+|+++..... ....+.++|..... . ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 81 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALESEELKDAKVREVMNSPVITIDANDSIAKAR 81 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhhhhhcCCcHHHhccCCceEECCCCcHHHHH
Confidence 357889999999999999999999999999889999999999998642211 22345555544332 1 11
Q ss_pred HHH-----hhhce-eeCCcEEEEEehhhHH
Q 028824 162 KVC-----EKCLS-FENYICLGSLSLKFLT 185 (203)
Q Consensus 162 ~~~-----~~llv-~~~g~lvGiVt~~DI~ 185 (203)
+.+ ..+++ +++|+++|+++..|++
T Consensus 82 ~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~ 111 (113)
T cd04615 82 WLMSNNNISRLPVLDDKGKVGGIVTEDDIL 111 (113)
T ss_pred HHHHHcCCCeeeEECCCCeEEEEEEHHHhh
Confidence 222 22343 4568999999999983
No 47
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.81 E-value=2.5e-08 Score=73.96 Aligned_cols=92 Identities=23% Similarity=0.281 Sum_probs=66.2
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC-CeEEEEEehHHHhhchhhcC--------------CCccccCccCCcc
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISG--------------SGRADNSMFPEVD 158 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~-g~lvGiVt~~Dll~~~~~~~--------------~~~v~~~m~~~v~ 158 (203)
++.++.++.++.++++.|.+.+...+||+|++ |+++|+|+..|++....... ...+.++|.....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNVI 81 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcCCce
Confidence 57889999999999999999999999999987 99999999999986532211 1133344443221
Q ss_pred ---------chHHHH-----hhhceee-CCcEEEEEehhhHH
Q 028824 159 ---------STWKVC-----EKCLSFE-NYICLGSLSLKFLT 185 (203)
Q Consensus 159 ---------~~~~~~-----~~llv~~-~g~lvGiVt~~DI~ 185 (203)
.....+ ..+++.+ +|+++|+|+..|++
T Consensus 82 ~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~ 123 (125)
T cd04631 82 TITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLL 123 (125)
T ss_pred EeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhh
Confidence 122222 2355554 58999999999994
No 48
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.81 E-value=3.1e-08 Score=71.91 Aligned_cols=89 Identities=24% Similarity=0.254 Sum_probs=66.0
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCccCCcc-----c----hHHHH
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD-----S----TWKVC 164 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v~-----~----~~~~~ 164 (203)
++.++.+++++.++++.|.+++.+.+||+|++|+++|+|+..|++... ....+.++|..... . ..+.+
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~---~~~~v~~~~~~~~~~v~~~~~l~~~~~~~ 79 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKD---PDTTIEKVMTKNPITVNPKTSVASVAHMM 79 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhccc---ccccHHHHhcCCCeEECCCCCHHHHHHHH
Confidence 688999999999999999999999999999889999999999998542 12234445543221 1 12222
Q ss_pred -----hhhcee-eCCcEEEEEehhhHH
Q 028824 165 -----EKCLSF-ENYICLGSLSLKFLT 185 (203)
Q Consensus 165 -----~~llv~-~~g~lvGiVt~~DI~ 185 (203)
..+++. ++|+++|+++..|++
T Consensus 80 ~~~~~~~~~Vv~~~~~~~G~it~~di~ 106 (108)
T cd04596 80 IWEGIEMLPVVDDNKKLLGIISRQDVL 106 (108)
T ss_pred HHcCCCeeeEEcCCCCEEEEEEHHHhh
Confidence 234444 578999999999993
No 49
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=98.80 E-value=4.8e-08 Score=70.42 Aligned_cols=90 Identities=21% Similarity=0.272 Sum_probs=66.3
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCccCCcc-----c----hHHHH
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD-----S----TWKVC 164 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v~-----~----~~~~~ 164 (203)
++.+++++.++.++++.|.++++..+||+|++|+++|+|+..|+++... ....+.++|..... . ..+.+
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~--~~~~v~~~~~~~~~~v~~~~~~~~~~~~~ 80 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYK--EAKSLEDIMLEDVFTVQPDASLRDVLGLV 80 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHhh--cCCcHhHhhcCCceEECCCCcHHHHHHHH
Confidence 5788999999999999999999999999998899999999999986432 12234455544322 1 12222
Q ss_pred -----hhhce-eeCCcEEEEEehhhHH
Q 028824 165 -----EKCLS-FENYICLGSLSLKFLT 185 (203)
Q Consensus 165 -----~~llv-~~~g~lvGiVt~~DI~ 185 (203)
..+++ +++|+++|+++.+|++
T Consensus 81 ~~~~~~~~~vv~~~g~~~Gvit~~~l~ 107 (109)
T cd04583 81 LKRGPKYVPVVDEDGKLVGLITRSSLV 107 (109)
T ss_pred HHcCCceeeEECCCCeEEEEEehHHhh
Confidence 22444 4578999999999984
No 50
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.80 E-value=4.2e-08 Score=73.00 Aligned_cols=91 Identities=18% Similarity=0.178 Sum_probs=64.5
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC-CeEEEEEehHHHhhchhhcC-C-C----------ccccCccCCcc--
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISG-S-G----------RADNSMFPEVD-- 158 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~-g~lvGiVt~~Dll~~~~~~~-~-~----------~v~~~m~~~v~-- 158 (203)
++.++.+++++.++++.|.+++++.+||+|++ |+++|+|+..|++++..... . . ....+|..++.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVISI 81 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceEe
Confidence 67889999999999999999999999999987 99999999999987532210 0 0 01123333221
Q ss_pred -------chHHHH-----hhhcee-eCCcEEEEEehhhH
Q 028824 159 -------STWKVC-----EKCLSF-ENYICLGSLSLKFL 184 (203)
Q Consensus 159 -------~~~~~~-----~~llv~-~~g~lvGiVt~~DI 184 (203)
..++.+ ..+++. ++|+++|+||..|+
T Consensus 82 ~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di 120 (123)
T cd04627 82 NGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDV 120 (123)
T ss_pred CCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHh
Confidence 123333 335555 46899999999998
No 51
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.80 E-value=4.4e-08 Score=71.24 Aligned_cols=92 Identities=20% Similarity=0.280 Sum_probs=67.0
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc--CCCccccCccCCcc---------chHH
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS--GSGRADNSMFPEVD---------STWK 162 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~--~~~~v~~~m~~~v~---------~~~~ 162 (203)
++.+++.+.++.++++.|.+.++..+||+|++|+++|+|+..|+++..... ....+.++|..... ...+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~ 81 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAGIDLDTPVSEIMTRDLVTVDPDEPVAEAAK 81 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhccCCCccCHHHhccCCCEEECCCCcHHHHHH
Confidence 577899999999999999999999999999889999999999998653221 12344555554332 1122
Q ss_pred HH-----hhhce-eeCCcEEEEEehhhHH
Q 028824 163 VC-----EKCLS-FENYICLGSLSLKFLT 185 (203)
Q Consensus 163 ~~-----~~llv-~~~g~lvGiVt~~DI~ 185 (203)
.+ ..+++ +++|+++|+++..|++
T Consensus 82 ~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~ 110 (112)
T cd04624 82 LMRKNNIRHHLVVDKGGELVGVISIRDLV 110 (112)
T ss_pred HHHHcCccEEEEEcCCCcEEEEEEHHHhc
Confidence 22 12344 4469999999999983
No 52
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.79 E-value=4.2e-08 Score=71.71 Aligned_cols=92 Identities=17% Similarity=0.144 Sum_probs=67.3
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc--CCCccccCccCCcc---------chHH
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS--GSGRADNSMFPEVD---------STWK 162 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~--~~~~v~~~m~~~v~---------~~~~ 162 (203)
.+.++++++++.++++.|.+.++..++|+|++|+++|+|+.+|+++..... ....+.++|.+... ...+
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~ 82 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKGLSLDDPVSEVMNRNPITAKVGSSREEILA 82 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcCCCcCCCHHHhhcCCCEEEcCCCCHHHHHH
Confidence 367889999999999999999999999999889999999999998643221 12345566654332 1122
Q ss_pred HH-----hhhcee-eCCcEEEEEehhhHH
Q 028824 163 VC-----EKCLSF-ENYICLGSLSLKFLT 185 (203)
Q Consensus 163 ~~-----~~llv~-~~g~lvGiVt~~DI~ 185 (203)
.+ ..+++. ++|+++|+|+.+|++
T Consensus 83 ~~~~~~~~~~~Vv~~~~~~~Gvit~~di~ 111 (113)
T cd04607 83 LMRERSIRHLPILDEEGRVVGLATLDDLL 111 (113)
T ss_pred HHHHCCCCEEEEECCCCCEEEEEEhHHhc
Confidence 22 335454 578999999999984
No 53
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.78 E-value=1.5e-08 Score=74.59 Aligned_cols=70 Identities=19% Similarity=0.407 Sum_probs=60.2
Q ss_pred cceEecccccC-------CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 68 SGTLTANSAAP-------SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 68 ~g~~~~~~l~~-------~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
-|.++.+++.. .....++.++|.+ ++.++.+++++.++++.|.+++...+||+|++|+++|+|+.+|+++
T Consensus 37 ~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 37 AGVLTKTDVVRQMGRCGGPGCTAPVENVMTR--AVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred EEEEehHHHHHHHhhcCCCcccCCHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 57787666532 2334679999988 8999999999999999999999999999998899999999999874
No 54
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=98.78 E-value=3.4e-08 Score=71.82 Aligned_cols=92 Identities=23% Similarity=0.228 Sum_probs=67.8
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcC---CCccccCccCCcc---------chH
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG---SGRADNSMFPEVD---------STW 161 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~---~~~v~~~m~~~v~---------~~~ 161 (203)
++.++++++++.++++.|.+.+.+.+||+|++|+++|+|+..++++...... ...+.++|.+... ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~ 82 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGLDILTLPVADVMTRNPKTIDPDALAAEAL 82 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccCccccCCHHHhhccCCeEECCCCcHHHHH
Confidence 5778899999999999999888999999998899999999999987543221 1245566654332 112
Q ss_pred HHH-----hhhcee-eCCcEEEEEehhhHH
Q 028824 162 KVC-----EKCLSF-ENYICLGSLSLKFLT 185 (203)
Q Consensus 162 ~~~-----~~llv~-~~g~lvGiVt~~DI~ 185 (203)
+.+ ..+++. ++|+++|+|+..|++
T Consensus 83 ~~~~~~~~~~~~Vv~~~~~~iG~it~~di~ 112 (114)
T cd04604 83 ELMEENKITALPVVDDNGRPVGVLHIHDLL 112 (114)
T ss_pred HHHHHcCCCEEEEECCCCCEEEEEEHHHhh
Confidence 222 234444 479999999999994
No 55
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.78 E-value=6.7e-08 Score=70.24 Aligned_cols=91 Identities=20% Similarity=0.238 Sum_probs=66.0
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc----CCCccccCccCCcc---------ch
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS----GSGRADNSMFPEVD---------ST 160 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~----~~~~v~~~m~~~v~---------~~ 160 (203)
++.++.+++++.++++.|.+++...++|.+ +|+++|+++.+|+++..... ....+.++|..... ..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a 80 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSIDEV 80 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHHHH
Confidence 577899999999999999888887887776 59999999999998654321 12345566654321 12
Q ss_pred HHHH-----hhhceeeCCcEEEEEehhhHH
Q 028824 161 WKVC-----EKCLSFENYICLGSLSLKFLT 185 (203)
Q Consensus 161 ~~~~-----~~llv~~~g~lvGiVt~~DI~ 185 (203)
.+.+ ..+++.++|+++|+|+.+|++
T Consensus 81 ~~~m~~~~~~~l~Vv~~~~~~Gvvt~~dl~ 110 (112)
T cd04625 81 RRLMVERHLRYLPVLDGGTLLGVISFHDVA 110 (112)
T ss_pred HHHHHHcCCCeeeEEECCEEEEEEEHHHhh
Confidence 2222 346666789999999999994
No 56
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.77 E-value=5.9e-08 Score=72.61 Aligned_cols=48 Identities=29% Similarity=0.511 Sum_probs=44.6
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~ 141 (203)
++.++++++++.++++.|.+++++.+||+|++|+++|+|+..|+++..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~ 49 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLL 49 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhh
Confidence 578899999999999999999999999999889999999999998754
No 57
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.77 E-value=3.1e-08 Score=90.96 Aligned_cols=103 Identities=26% Similarity=0.318 Sum_probs=78.0
Q ss_pred cccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC---CeEEEEEehHHHhhchhhcCCCccccCccC-Ccc
Q 028824 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLALDSISGSGRADNSMFP-EVD 158 (203)
Q Consensus 83 ~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~---g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~-~v~ 158 (203)
.+.++.|.+ ++.++++++++.++++.|.+++++.+||+|++ ++++|+|+.+|++.... ....+.++|.+ ++.
T Consensus 80 k~~~~~~~~--~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~--~~~~V~dvm~~~~~~ 155 (450)
T TIGR01302 80 KRAENGIIS--DPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKD--KGKPVSEVMTREEVI 155 (450)
T ss_pred ccccCceec--CceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhc--CCCCHHHhhCCCCCE
Confidence 456888988 89999999999999999999999999999987 79999999999985422 23456667762 321
Q ss_pred ---------chHHHH-----hhhc-eeeCCcEEEEEehhhHHHHHH
Q 028824 159 ---------STWKVC-----EKCL-SFENYICLGSLSLKFLTFLLI 189 (203)
Q Consensus 159 ---------~~~~~~-----~~ll-v~~~g~lvGiVt~~DI~~~L~ 189 (203)
...+.+ ..++ ++++|+++|+||.+|++..+.
T Consensus 156 ~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 156 TVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRK 201 (450)
T ss_pred EECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhccc
Confidence 112222 2233 456899999999999966543
No 58
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=98.76 E-value=7.7e-08 Score=69.92 Aligned_cols=91 Identities=18% Similarity=0.144 Sum_probs=67.2
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc---CCCccccCccCCcc-----c----hH
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS---GSGRADNSMFPEVD-----S----TW 161 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~---~~~~v~~~m~~~v~-----~----~~ 161 (203)
++++++.+.++.++++.|.+.+...++|+|+ |+++|+++.+|+++..... ....+.++|..... . ..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 80 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVLLDGLPSSTPVGEIATFPLITVDPDDFLFNAL 80 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHHcCCCCCCCCHHHHhCCCcEEECCCCcHHHHH
Confidence 5678899999999999999999999999997 8999999999998654221 22345556654322 1 11
Q ss_pred HHH-----hhhceeeCCcEEEEEehhhHH
Q 028824 162 KVC-----EKCLSFENYICLGSLSLKFLT 185 (203)
Q Consensus 162 ~~~-----~~llv~~~g~lvGiVt~~DI~ 185 (203)
+.+ ..+++.++|+++|+|+..|++
T Consensus 81 ~~~~~~~~~~~~Vv~~~~~~G~it~~dl~ 109 (111)
T cd04589 81 LLMTRHRIHRVVVREGGEVVGVLEQTDLL 109 (111)
T ss_pred HHHHHhCccEEEEeeCCEEEEEEEhHHhh
Confidence 222 336666779999999999984
No 59
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=98.76 E-value=8.8e-08 Score=69.27 Aligned_cols=85 Identities=24% Similarity=0.326 Sum_probs=63.5
Q ss_pred EEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCccCCcc---------chHHHH--
Q 028824 96 HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD---------STWKVC-- 164 (203)
Q Consensus 96 ~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v~---------~~~~~~-- 164 (203)
.++++++++.++++.|.+.+++.+||+|+ |+++|+|+.+|+++... ..+.++|.+... ...+.+
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~----~~~~~~~~~~~~~v~~~~~l~~a~~~~~~ 78 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENATY----GDVVDYIVRGIPYVRLTSTAEEAWEVMMK 78 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhhcc----cchhhhhhcCCcEEcCCCCHHHHHHHHHH
Confidence 56789999999999999999999999997 99999999999986432 123344443322 122222
Q ss_pred ---hhhceeeCCcEEEEEehhhHH
Q 028824 165 ---EKCLSFENYICLGSLSLKFLT 185 (203)
Q Consensus 165 ---~~llv~~~g~lvGiVt~~DI~ 185 (203)
..+++.++|+++|+++..|++
T Consensus 79 ~~~~~~~Vv~~~~~iGvit~~dl~ 102 (104)
T cd04594 79 NKTRWCPVVDDGKFKGIVTLDSIL 102 (104)
T ss_pred cCcceEEEEECCEEEEEEEHHHhh
Confidence 235666789999999999984
No 60
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=98.76 E-value=8e-08 Score=69.74 Aligned_cols=91 Identities=23% Similarity=0.258 Sum_probs=66.1
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc---CCCccccCccCCcc-----c----hH
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS---GSGRADNSMFPEVD-----S----TW 161 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~---~~~~v~~~m~~~v~-----~----~~ 161 (203)
++.+++.+.++.++.+.|.+++++.+||+|+ |+++|+|+..|+++..... ....+.++|..... . ..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 80 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAEGLDPDTPVSEVMTAPPITIPPDATVFEAL 80 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHhccCCCccCCHHHHhCCCCeEECCCCcHHHHH
Confidence 5788999999999999999999999999997 9999999999998632211 12234455543321 1 12
Q ss_pred HHH-----hhhceeeCCcEEEEEehhhHH
Q 028824 162 KVC-----EKCLSFENYICLGSLSLKFLT 185 (203)
Q Consensus 162 ~~~-----~~llv~~~g~lvGiVt~~DI~ 185 (203)
+.+ ..+++.++|+++|+++..|++
T Consensus 81 ~~~~~~~~~~~~Vv~~~~~~Giit~~di~ 109 (111)
T cd04800 81 LLMLERGIHHLPVVDDGRLVGVISATDLL 109 (111)
T ss_pred HHHHHcCCCeeeEeECCEEEEEEEHHHhh
Confidence 222 335665569999999999994
No 61
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.76 E-value=7.9e-08 Score=68.94 Aligned_cols=88 Identities=22% Similarity=0.366 Sum_probs=65.4
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCccCCcc---------chHHHH
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD---------STWKVC 164 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v~---------~~~~~~ 164 (203)
++.++++++++.++++.|.+++...+||+| +|+++|+++..|+.++.. ...+.++|.+... ...+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~~~---~~~~~~~~~~~~~~v~~~~~l~~~~~~~ 77 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRAHP---NRLVADAMTREVVTISPEASLLEAKRLM 77 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhcccc---cCCHHHHccCCCEEECCCCCHHHHHHHH
Confidence 577899999999999999999999999998 599999999999986431 2234445543321 122222
Q ss_pred -----hhhceeeCCcEEEEEehhhHH
Q 028824 165 -----EKCLSFENYICLGSLSLKFLT 185 (203)
Q Consensus 165 -----~~llv~~~g~lvGiVt~~DI~ 185 (203)
..+++.++|+++|+|+..|++
T Consensus 78 ~~~~~~~~~Vv~~~~~~G~it~~~l~ 103 (105)
T cd04599 78 EEKKIERLPVLRERKLVGIITKGTIA 103 (105)
T ss_pred HHcCCCEeeEEECCEEEEEEEHHHhc
Confidence 335666669999999999983
No 62
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=98.76 E-value=8.1e-08 Score=69.59 Aligned_cols=91 Identities=22% Similarity=0.296 Sum_probs=66.0
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc-CCCccccCccCCcc---------chHHH
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS-GSGRADNSMFPEVD---------STWKV 163 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~-~~~~v~~~m~~~v~---------~~~~~ 163 (203)
++.++++++++.++++.|.+++++.+||+|+ |+++|+++.+|+++..... ....+.++|..... ...+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~ 80 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIARGLELAKVKDVMTKDVITIDEDEQLYDAIRL 80 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccccccCHHHHhcCCceEECCCCCHHHHHHH
Confidence 6788999999999999999999999999998 9999999999999754321 11234445543221 12222
Q ss_pred H-----hhhceee-CCcEEEEEehhhHH
Q 028824 164 C-----EKCLSFE-NYICLGSLSLKFLT 185 (203)
Q Consensus 164 ~-----~~llv~~-~g~lvGiVt~~DI~ 185 (203)
+ ..+++.+ +|+++|+|+..|++
T Consensus 81 ~~~~~~~~~~V~~~~~~~~G~i~~~dl~ 108 (110)
T cd04588 81 MNKHNVGRLIVTDDEGRPVGIITRTDIL 108 (110)
T ss_pred HHhcCCCEEEEECCCCCEEEEEEhHHhh
Confidence 2 2345544 58999999999984
No 63
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.75 E-value=6.8e-08 Score=70.97 Aligned_cols=91 Identities=26% Similarity=0.291 Sum_probs=66.7
Q ss_pred CeEEEcCCCCHHHHHHHHHHCC-CcEEEEEeCCCeEEEEEehHHHhhchhh------cCCCccccCccCCccc-------
Q 028824 94 ELHVVKPTTTVDEALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLALDSI------SGSGRADNSMFPEVDS------- 159 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~-~~~lPVvd~~g~lvGiVt~~Dll~~~~~------~~~~~v~~~m~~~v~~------- 159 (203)
++.++++++++.++++.|.+.+ ++.+||+|+ |+++|+|+..|++++... .....+.++|......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~ 80 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADTPL 80 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCCCcEEecCCCCH
Confidence 5678899999999999998887 899999998 999999999999864321 1233466666554321
Q ss_pred --hHHHHh---------hhceeeCCcEEEEEehhhHH
Q 028824 160 --TWKVCE---------KCLSFENYICLGSLSLKFLT 185 (203)
Q Consensus 160 --~~~~~~---------~llv~~~g~lvGiVt~~DI~ 185 (203)
....+. .++++++|+++|+|+..|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~ 117 (119)
T cd04598 81 EEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLL 117 (119)
T ss_pred HHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHh
Confidence 112221 12566789999999999984
No 64
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=98.74 E-value=1.9e-08 Score=85.33 Aligned_cols=72 Identities=19% Similarity=0.317 Sum_probs=63.8
Q ss_pred cceEecccc----cCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824 68 SGTLTANSA----APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (203)
Q Consensus 68 ~g~~~~~~l----~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~ 141 (203)
-|.++..++ .+-....+|+|+|.+ +++++++|+.+.||+++|..++++++.|+|.+|+++|+||..|++...
T Consensus 215 vGiit~~dI~~aia~g~~~~kV~~~M~k--~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~i 290 (294)
T COG2524 215 VGIITLSDIAKAIANGNLDAKVSDYMRK--NVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRI 290 (294)
T ss_pred EEEEEHHHHHHHHHcCCccccHHHHhcc--CCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHh
Confidence 677886665 333456899999999 999999999999999999999999999999999999999999999643
No 65
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.74 E-value=3.8e-08 Score=91.46 Aligned_cols=103 Identities=16% Similarity=0.123 Sum_probs=76.6
Q ss_pred ccccccccC-CCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeC---CCeEEEEEehHHHhhchhhcCCCccccCccC--Cc
Q 028824 84 TVGDFMTTK-EELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFP--EV 157 (203)
Q Consensus 84 ~V~diM~~~-~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~---~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~--~v 157 (203)
+|+++|... .+.+++++++++.+|++.|.+++++.+||+|+ +|+++|+||.+||.... ......+.++|.+ ++
T Consensus 95 kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~-~~~~~~V~dIMt~~~~~ 173 (502)
T PRK07107 95 RVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR-MSLDTKVKDFMTPFEKL 173 (502)
T ss_pred HHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc-cCCCCCHHHHhCCCCCe
Confidence 577777521 14579999999999999999999999999996 58999999999997532 2334568888885 22
Q ss_pred c---------chHHHH-----hhhceee-CCcEEEEEehhhHHHH
Q 028824 158 D---------STWKVC-----EKCLSFE-NYICLGSLSLKFLTFL 187 (203)
Q Consensus 158 ~---------~~~~~~-----~~llv~~-~g~lvGiVt~~DI~~~ 187 (203)
. ...+.+ ..+++.+ +++++|+||.+|++..
T Consensus 174 itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 174 VTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSH 218 (502)
T ss_pred EEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhc
Confidence 1 112222 3456554 6899999999999554
No 66
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.74 E-value=3.3e-08 Score=91.29 Aligned_cols=106 Identities=18% Similarity=0.187 Sum_probs=81.4
Q ss_pred cCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCccCC
Q 028824 77 APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE 156 (203)
Q Consensus 77 ~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~ 156 (203)
.+....+++.++|.+ +++++.+++++.++++.|.+++++.+||+|+ ++++|+||.+|+.... ....+.++|..+
T Consensus 82 ae~v~~VKv~eim~~--~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~-gklvGIVT~rDL~~~~---~~~~V~dIMt~~ 155 (475)
T TIGR01303 82 KQTVAFVKSRDLVLD--TPITLAPHDTVSDAMALIHKRAHGAAVVILE-DRPVGLVTDSDLLGVD---RFTQVRDIMSTD 155 (475)
T ss_pred HHHHhhcchhhcccc--CCeEECCCCCHHHHHHHHHhcCCeEEEEEEC-CEEEEEEEHHHhhcCC---CCCCHHHHccCC
Confidence 455677889999998 8999999999999999999999999999884 7999999999997542 224577778765
Q ss_pred ccc---------hHHHH-----hhhcee-eCCcEEEEEehhhHHHHH
Q 028824 157 VDS---------TWKVC-----EKCLSF-ENYICLGSLSLKFLTFLL 188 (203)
Q Consensus 157 v~~---------~~~~~-----~~llv~-~~g~lvGiVt~~DI~~~L 188 (203)
+.. ..+.+ ..+++. ++|+++|+|+.+|++...
T Consensus 156 litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~ 202 (475)
T TIGR01303 156 LVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRAT 202 (475)
T ss_pred ceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHH
Confidence 431 11222 234544 479999999999995533
No 67
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=98.73 E-value=6.9e-08 Score=71.00 Aligned_cols=92 Identities=27% Similarity=0.323 Sum_probs=66.5
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhh------------cCCCccccCccCCcc---
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI------------SGSGRADNSMFPEVD--- 158 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~------------~~~~~v~~~m~~~v~--- 158 (203)
++.++++++++.+|++.|.+.+++.+||+|++|+++|+|+..|+.+.... .....+.++|.....
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~i~ 81 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVITVH 81 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhCCCeEEC
Confidence 57889999999999999999999999999988999999999999864321 111234444443322
Q ss_pred --c----hHHHH-----hhhceeeCCcEEEEEehhhHH
Q 028824 159 --S----TWKVC-----EKCLSFENYICLGSLSLKFLT 185 (203)
Q Consensus 159 --~----~~~~~-----~~llv~~~g~lvGiVt~~DI~ 185 (203)
. ..+.+ ..+++.++|+++|+++..|++
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Gvv~~~di~ 119 (121)
T cd04584 82 PLDTVEEAALLMREHRIGCLPVVEDGRLVGIITETDLL 119 (121)
T ss_pred CCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHhh
Confidence 1 12222 235565569999999999993
No 68
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=98.72 E-value=1.2e-07 Score=69.38 Aligned_cols=91 Identities=24% Similarity=0.272 Sum_probs=65.4
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc-------------CCCccccCccCCcc--
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS-------------GSGRADNSMFPEVD-- 158 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~-------------~~~~v~~~m~~~v~-- 158 (203)
++.+++++.++.++++.|.+.++..+||+|+ |+++|+++..|+++..... ....+.++|..+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPITV 80 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCCCeEe
Confidence 5788999999999999999999999999997 9999999999999754221 01234445544321
Q ss_pred ---c----hHHHH-----hhhceee-CCcEEEEEehhhHH
Q 028824 159 ---S----TWKVC-----EKCLSFE-NYICLGSLSLKFLT 185 (203)
Q Consensus 159 ---~----~~~~~-----~~llv~~-~g~lvGiVt~~DI~ 185 (203)
. ....+ ..+++.+ +|+++|+|+..|++
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~ 120 (122)
T cd04585 81 SPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLF 120 (122)
T ss_pred CCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhh
Confidence 1 12222 2344544 58999999999994
No 69
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.72 E-value=6.2e-08 Score=71.49 Aligned_cols=92 Identities=18% Similarity=0.300 Sum_probs=65.2
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhh------------cCCCccccCccCCcc---
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI------------SGSGRADNSMFPEVD--- 158 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~------------~~~~~v~~~m~~~v~--- 158 (203)
++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+++.... .....+.++|.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYSVT 81 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCeeEC
Confidence 67889999999999999999999999999988999999999999864210 012223344433221
Q ss_pred --c----hHHHH-----hhhc-eeeCCcEEEEEehhhHH
Q 028824 159 --S----TWKVC-----EKCL-SFENYICLGSLSLKFLT 185 (203)
Q Consensus 159 --~----~~~~~-----~~ll-v~~~g~lvGiVt~~DI~ 185 (203)
. ..+.+ ..++ ++++|+++|+++..|++
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~ 120 (122)
T cd04635 82 PDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVL 120 (122)
T ss_pred CCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhh
Confidence 1 12222 2234 34568999999999993
No 70
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.71 E-value=7.2e-08 Score=89.34 Aligned_cols=101 Identities=25% Similarity=0.268 Sum_probs=76.9
Q ss_pred ccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCcc-CCcc----
Q 028824 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMF-PEVD---- 158 (203)
Q Consensus 84 ~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~-~~v~---- 158 (203)
.++++|.+ ++.++++++++.++++.|.+++++.+||+|++|+++|+|+.+|+..... ....+.++|. .++.
T Consensus 88 ~~~dim~~--~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~--~~~~V~dim~~~~~v~v~~ 163 (486)
T PRK05567 88 RSESGVVT--DPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFETD--LSQPVSEVMTKERLVTVPE 163 (486)
T ss_pred hhhhcccC--CCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhccc--CCCcHHHHcCCCCCEEECC
Confidence 57889988 8999999999999999999999999999999999999999999975321 2335666665 2221
Q ss_pred -----chHHHH-----hhhc-eeeCCcEEEEEehhhHHHHH
Q 028824 159 -----STWKVC-----EKCL-SFENYICLGSLSLKFLTFLL 188 (203)
Q Consensus 159 -----~~~~~~-----~~ll-v~~~g~lvGiVt~~DI~~~L 188 (203)
...+.+ ..++ ++++|+++|+|+.+|++..+
T Consensus 164 ~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~ 204 (486)
T PRK05567 164 GTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAE 204 (486)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhh
Confidence 112222 2234 44689999999999996554
No 71
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.71 E-value=4e-08 Score=71.32 Aligned_cols=70 Identities=30% Similarity=0.452 Sum_probs=61.2
Q ss_pred cceEecccccCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 68 ~g~~~~~~l~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
.|.+..+++........+.++|.. ++.++.+++++.++++.|.+++...+||+|++|+++|+|+..|+++
T Consensus 38 ~G~v~~~~l~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 38 VGIVTSKDVAGKDPDTTIEKVMTK--NPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred EEEecHHHHhcccccccHHHHhcC--CCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 677777776444345679999987 8999999999999999999999999999998899999999999975
No 72
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.71 E-value=8.9e-08 Score=89.11 Aligned_cols=101 Identities=14% Similarity=0.093 Sum_probs=76.5
Q ss_pred ccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeC---CCeEEEEEehHHHhhchhhcCCCccccCccCC--cc--
Q 028824 86 GDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPE--VD-- 158 (203)
Q Consensus 86 ~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~---~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~--v~-- 158 (203)
+..|.+ +++++.+++++.++++.|.+++++.+||+|+ +|+++|+||.+|+.... ....++.++|.+. +.
T Consensus 103 ~~gmi~--dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~--~~~~~V~eIMt~~~~lvtv 178 (505)
T PLN02274 103 RVGFVS--DPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN--DRETKLSEVMTSDDDLVTA 178 (505)
T ss_pred cccccC--CCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc--ccCCcHHHHhccCCCcEEE
Confidence 334777 8999999999999999999999999999987 48999999999997543 2345677888754 21
Q ss_pred -------chHHHH-----hhhcee-eCCcEEEEEehhhHHHHHHH
Q 028824 159 -------STWKVC-----EKCLSF-ENYICLGSLSLKFLTFLLIF 190 (203)
Q Consensus 159 -------~~~~~~-----~~llv~-~~g~lvGiVt~~DI~~~L~a 190 (203)
...+.+ ..+++. ++++++|+|+++|++..+..
T Consensus 179 ~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 179 PAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence 122222 335554 57899999999999666654
No 73
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=98.71 E-value=3.7e-08 Score=83.61 Aligned_cols=97 Identities=27% Similarity=0.293 Sum_probs=74.0
Q ss_pred ccccccccccCCC-eEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhh--cCCCccccCccCCcc
Q 028824 82 VYTVGDFMTTKEE-LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI--SGSGRADNSMFPEVD 158 (203)
Q Consensus 82 ~~~V~diM~~~~~-~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~--~~~~~v~~~m~~~v~ 158 (203)
-++|+++|.+ + +.++.+++++.++++.|.+.+++.+||+|++|+++|+|+..|+.+.... .....+.++|.++..
T Consensus 154 ~~~v~~im~~--~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~~~~~~~~v~~im~~~~~ 231 (268)
T TIGR00393 154 LVKVKDLMQT--TDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLGGGSLKSEVRDFMTLGPK 231 (268)
T ss_pred hhhHHHHhCC--CCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhcCCcccCcHHHhCCCCCe
Confidence 4799999988 7 8999999999999999999999999999988999999999999875322 123456677765442
Q ss_pred c---------hHHHH-----hhhcee-eCCcEEEEEe
Q 028824 159 S---------TWKVC-----EKCLSF-ENYICLGSLS 180 (203)
Q Consensus 159 ~---------~~~~~-----~~llv~-~~g~lvGiVt 180 (203)
. ..+.+ ..++|. ++|+++|+|.
T Consensus 232 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 232 TFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred EECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 1 12222 345555 4689999984
No 74
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.70 E-value=1.4e-07 Score=69.51 Aligned_cols=91 Identities=19% Similarity=0.208 Sum_probs=65.8
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc-------------CCCccccCccCCcc--
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS-------------GSGRADNSMFPEVD-- 158 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~-------------~~~~v~~~m~~~v~-- 158 (203)
++.++.+++++.++++.|.++++..+||+|+ |+++|+++..|+++..... ....+.++|.....
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVITI 80 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCCceEE
Confidence 5788999999999999999999999999996 9999999999998643211 12234444543221
Q ss_pred -------chHHHH-----hhhceeeCCcEEEEEehhhHH
Q 028824 159 -------STWKVC-----EKCLSFENYICLGSLSLKFLT 185 (203)
Q Consensus 159 -------~~~~~~-----~~llv~~~g~lvGiVt~~DI~ 185 (203)
.....+ ..+++.++|+++|+|+..|++
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~~dl~ 119 (121)
T cd04633 81 EPDTSVSDVASLMLENNIGGLPVVDDGKLVGIVTRTDIL 119 (121)
T ss_pred CCCCcHHHHHHHHHHcCCCcccEEECCEEEEEEEHHHhh
Confidence 122222 335555559999999999994
No 75
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.70 E-value=5.3e-08 Score=70.79 Aligned_cols=71 Identities=20% Similarity=0.370 Sum_probs=61.8
Q ss_pred cceEecccccCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhc
Q 028824 68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (203)
Q Consensus 68 ~g~~~~~~l~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~ 140 (203)
.|.++.+++.......++.++|.+ ++.++.+++++.++++.|.+++...+||+|++|+++|+||..|+++.
T Consensus 38 ~G~v~~~~l~~~~~~~~v~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 38 LGVVSLRDLLLADPDTPVSDIMDT--DVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred EEEEEHHHHhcCCCcchHHHHhCC--CCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 678887777443345679999987 89999999999999999999999999999988999999999999864
No 76
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=98.70 E-value=1.6e-07 Score=68.22 Aligned_cols=91 Identities=27% Similarity=0.329 Sum_probs=65.2
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcC---C-CccccCccCCcc---------ch
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG---S-GRADNSMFPEVD---------ST 160 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~---~-~~v~~~m~~~v~---------~~ 160 (203)
++.++.+++++.++++.|.+++.+.+||+|+ |+++|+|+..|+++.....+ . ..+.++|..... ..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~~~ 80 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVLEA 80 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHHHH
Confidence 5778999999999999999999999999997 99999999999974322111 1 334455544322 12
Q ss_pred HHHH-----hhhcee-eCCcEEEEEehhhHH
Q 028824 161 WKVC-----EKCLSF-ENYICLGSLSLKFLT 185 (203)
Q Consensus 161 ~~~~-----~~llv~-~~g~lvGiVt~~DI~ 185 (203)
.+.+ ..+++. ++|+++|+|+..|++
T Consensus 81 ~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~ 111 (113)
T cd04587 81 LHLMVQGKFRHLPVVDKSGQVVGLLDVTKLT 111 (113)
T ss_pred HHHHHHcCCCcccEECCCCCEEEEEEHHHhc
Confidence 2222 234554 468999999999993
No 77
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=98.70 E-value=1.6e-07 Score=67.95 Aligned_cols=91 Identities=24% Similarity=0.285 Sum_probs=65.5
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCC--CccccCccCCcc---------chHH
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGS--GRADNSMFPEVD---------STWK 162 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~--~~v~~~m~~~v~---------~~~~ 162 (203)
++.++++++++.++++.|.+.+++.+||+|+ |+++|+++.+|+.+....... ..+.+.|..+.. ...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGREATVLVGDVMTRDPVTASPDETLRDALK 80 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhcCcccccCHHHhccCCCeEECCCCCHHHHHH
Confidence 6788999999999999999999999999998 999999999999875432111 023344443321 1222
Q ss_pred HH-----hhhceee-CCcEEEEEehhhHH
Q 028824 163 VC-----EKCLSFE-NYICLGSLSLKFLT 185 (203)
Q Consensus 163 ~~-----~~llv~~-~g~lvGiVt~~DI~ 185 (203)
.+ ..+++.+ +|+++|+|+..|++
T Consensus 81 ~~~~~~~~~~~V~~~~~~~~G~it~~di~ 109 (111)
T cd04612 81 RMAERDIGRLPVVDDSGRLVGIVSRSDLL 109 (111)
T ss_pred HHHhCCCCeeeEEcCCCCEEEEEEHHHhh
Confidence 22 2355544 59999999999993
No 78
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=98.69 E-value=1.3e-07 Score=69.02 Aligned_cols=84 Identities=20% Similarity=0.267 Sum_probs=64.3
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeC---CCeEEEEEehHHHhhchhhcCCCccccCccCCc---------cchH
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEV---------DSTW 161 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~---~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v---------~~~~ 161 (203)
....+.+++++.++.+.+.+.++..+||+|+ +|+++|+|+.+|+.+.... +|..+. ....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~--------~m~~~~~~v~~~~~l~~~~ 74 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN--------YIDPSPFTVSPRTSLEKVH 74 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH--------hccCCCceECCCCcHHHHH
Confidence 5678899999999999999999999999998 6999999999999865432 222211 1122
Q ss_pred HHH-----hhhceeeCCcEEEEEehhhHH
Q 028824 162 KVC-----EKCLSFENYICLGSLSLKFLT 185 (203)
Q Consensus 162 ~~~-----~~llv~~~g~lvGiVt~~DI~ 185 (203)
+.+ ..+++.++|+++|+|+.+|++
T Consensus 75 ~~~~~~~~~~~pVv~~~~~~Gvvt~~dl~ 103 (105)
T cd04591 75 QLFRKLGLRHLLVVDEGRLVGIITRKDLL 103 (105)
T ss_pred HHHHHcCCCEEEEEECCeEEEEEEhhhhh
Confidence 222 346666899999999999993
No 79
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.68 E-value=7.2e-08 Score=69.39 Aligned_cols=70 Identities=24% Similarity=0.461 Sum_probs=60.6
Q ss_pred cceEecccccCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 68 ~g~~~~~~l~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
-|.+...++........++++|.. .+.++.+++++.++++.|.+++...+||+|++|+++|+|+..|+++
T Consensus 37 ~g~v~~~~l~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 37 VGIVSARDLLGKDPDETVEEIMSK--DLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred EEEEEHHHhhccCccccHHHhCCC--CCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 677777776443345579999987 7899999999999999999999999999998899999999999975
No 80
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=98.68 E-value=2e-07 Score=67.42 Aligned_cols=91 Identities=23% Similarity=0.287 Sum_probs=65.8
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc--CCCccccCccCCcc---------chHH
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS--GSGRADNSMFPEVD---------STWK 162 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~--~~~~v~~~m~~~v~---------~~~~ 162 (203)
++.++++++++.++++.|.+.+...+||+|+ |+++|+++.+|+++..... ....+.++|..... ...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~ 80 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLASGPDLQTPVGEVMSSPLLTVPADTSLYDARQ 80 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhcCCCCCcCHHHhcCCCceEECCCCCHHHHHH
Confidence 5778999999999999999999999999987 9999999999998754221 22345555543321 1222
Q ss_pred HH-----hhhcee-eCCcEEEEEehhhHH
Q 028824 163 VC-----EKCLSF-ENYICLGSLSLKFLT 185 (203)
Q Consensus 163 ~~-----~~llv~-~~g~lvGiVt~~DI~ 185 (203)
.+ ..+++. ++|+++|+|+..|++
T Consensus 81 ~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~ 109 (111)
T cd04611 81 LMREHGIRHLVVVDDDGELLGLLSQTDLL 109 (111)
T ss_pred HHHHcCCeEEEEECCCCcEEEEEEhHHhh
Confidence 22 124444 458999999999984
No 81
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.67 E-value=6.2e-08 Score=71.02 Aligned_cols=69 Identities=22% Similarity=0.347 Sum_probs=59.4
Q ss_pred cceEecccccC-------CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 68 SGTLTANSAAP-------SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 68 ~g~~~~~~l~~-------~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
-|.++.+++.. .....++.++|.+ ++.++++++++.++++.|.+++...+||+|+ |+++|+|+..|+++
T Consensus 38 ~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 38 YGIVTMRDILKKVVAEGRDPDRVNVYEIMTK--PLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred EEEEehHHHHHHHHhCCCCCCccCHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 57888777632 2234679999987 8999999999999999999999999999997 99999999999975
No 82
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=98.67 E-value=6.9e-08 Score=69.71 Aligned_cols=90 Identities=33% Similarity=0.431 Sum_probs=65.1
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCccCCc------c----chHHH
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV------D----STWKV 163 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v------~----~~~~~ 163 (203)
++.++..++++.++++.|.+++...+||+|++|+++|+|+.+|++.... ....+.++|.... . .....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~--~~~~v~~~~~~~~~~~~~~~~~l~~~~~~ 80 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFETD--LDKPVSEVMTPENLLTTVEGTSLEEALEL 80 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeeccc--CCCCHHHhcccCceEEecCCCCHHHHHHH
Confidence 6788999999999999999999999999998899999999999875422 2223444443221 1 11222
Q ss_pred H-----hhhcee-eCCcEEEEEehhhHH
Q 028824 164 C-----EKCLSF-ENYICLGSLSLKFLT 185 (203)
Q Consensus 164 ~-----~~llv~-~~g~lvGiVt~~DI~ 185 (203)
+ ..+++. ++|+++|+|+.+|++
T Consensus 81 ~~~~~~~~~~Vv~~~~~~~Gvi~~~dil 108 (110)
T cd04601 81 LHEHKIEKLPVVDDEGKLKGLITVKDIE 108 (110)
T ss_pred HHHhCCCeeeEEcCCCCEEEEEEhhhhh
Confidence 2 224444 469999999999984
No 83
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.66 E-value=7.1e-08 Score=89.58 Aligned_cols=101 Identities=22% Similarity=0.149 Sum_probs=76.2
Q ss_pred cccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC---CeEEEEEehHHHhhchhhcCCCccccCccC--Cccc
Q 028824 85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLALDSISGSGRADNSMFP--EVDS 159 (203)
Q Consensus 85 V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~---g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~--~v~~ 159 (203)
.++.|.. +++++++++++.+++++|.+++++.+||+|++ ++++|+|+.+|+.... ....++.++|.+ ++..
T Consensus 98 ~e~g~i~--dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~--~~~~~V~diMt~~~~lvt 173 (495)
T PTZ00314 98 FENGFIM--DPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK--DKSTPVSEVMTPREKLVV 173 (495)
T ss_pred ccccccc--CCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc--cCCCCHHHhhCCcCCceE
Confidence 6678887 89999999999999999999999999999874 8999999999997432 234467777875 3211
Q ss_pred ---------hHHHH-----hhhce-eeCCcEEEEEehhhHHHHHH
Q 028824 160 ---------TWKVC-----EKCLS-FENYICLGSLSLKFLTFLLI 189 (203)
Q Consensus 160 ---------~~~~~-----~~llv-~~~g~lvGiVt~~DI~~~L~ 189 (203)
..+.+ ..+++ +++++++|+||.+|++....
T Consensus 174 v~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~ 218 (495)
T PTZ00314 174 GNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRG 218 (495)
T ss_pred eCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhccc
Confidence 12222 23444 46789999999999955443
No 84
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=98.66 E-value=8.3e-08 Score=70.43 Aligned_cols=90 Identities=24% Similarity=0.296 Sum_probs=65.6
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeC---CCeEEEEEehHHHhhchhhcCCCccccCccCCcc-------c----
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD-------S---- 159 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~---~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v~-------~---- 159 (203)
++.++.+++++.++++.|.++++..+||+|+ +|+++|+|+.+|++.... ....+.++|..... .
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~--~~~~v~~~~~~~~~~~~~~~~~~l~~ 80 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD--SETPLSEVMTPREVLVVAPTGITLEE 80 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc--cCCCHHHhcCCCceEEECCCCCCHHH
Confidence 4678899999999999999999999999997 789999999999975322 22335556653221 1
Q ss_pred hHHHH-----hhhcee-eCCcEEEEEehhhHH
Q 028824 160 TWKVC-----EKCLSF-ENYICLGSLSLKFLT 185 (203)
Q Consensus 160 ~~~~~-----~~llv~-~~g~lvGiVt~~DI~ 185 (203)
..+.+ ..+++. ++|+++|+|+.+|++
T Consensus 81 ~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~ 112 (114)
T cd04602 81 ANEILRESKKGKLPIVNDDGELVALVTRSDLK 112 (114)
T ss_pred HHHHHHhcCCCceeEECCCCeEEEEEEHHHhh
Confidence 12222 234544 578999999999984
No 85
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.66 E-value=2.7e-07 Score=67.04 Aligned_cols=91 Identities=22% Similarity=0.326 Sum_probs=65.0
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhc-hhh--c-CCCccccCccCCcc---------ch
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL-DSI--S-GSGRADNSMFPEVD---------ST 160 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~-~~~--~-~~~~v~~~m~~~v~---------~~ 160 (203)
++.++++++++.++.+.|.+++++.+||+|+ |+++|+++..|++.. ... . ....+.++|..... ..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 80 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVDEA 80 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHHHH
Confidence 5788999999999999999999999999997 999999999998732 111 1 11125555544322 12
Q ss_pred HHHH-----hhhcee-eCCcEEEEEehhhHH
Q 028824 161 WKVC-----EKCLSF-ENYICLGSLSLKFLT 185 (203)
Q Consensus 161 ~~~~-----~~llv~-~~g~lvGiVt~~DI~ 185 (203)
.+.+ ..+++. ++|+++|+|+..|++
T Consensus 81 ~~~~~~~~~~~~~V~~~~~~~~G~it~~di~ 111 (113)
T cd04622 81 ARLMREHQVRRLPVVDDDGRLVGIVSLGDLA 111 (113)
T ss_pred HHHHHHcCCCeeeEECCCCcEEEEEEHHHhh
Confidence 2222 234454 458999999999993
No 86
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.65 E-value=2.8e-07 Score=66.96 Aligned_cols=91 Identities=22% Similarity=0.244 Sum_probs=65.6
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc----CCCccccCccCCcc---------ch
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS----GSGRADNSMFPEVD---------ST 160 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~----~~~~v~~~m~~~v~---------~~ 160 (203)
++.++++++++.++++.|.+.+.+.+||+|+ ++++|+++..|+++..... ....+.++|.+... ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~ 80 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLNEA 80 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHHHH
Confidence 5778999999999999999999999999996 5999999999998743211 12344555544321 11
Q ss_pred HHHH-----hhhceeeCCcEEEEEehhhHH
Q 028824 161 WKVC-----EKCLSFENYICLGSLSLKFLT 185 (203)
Q Consensus 161 ~~~~-----~~llv~~~g~lvGiVt~~DI~ 185 (203)
.+.+ ..+++.++++++|+|+..|++
T Consensus 81 ~~~~~~~~~~~~~Vv~~~~~~Gvi~~~di~ 110 (112)
T cd04802 81 AKLMAKHGIKRLPVVDDDELVGIVTTTDIV 110 (112)
T ss_pred HHHHHHcCCCeeEEeeCCEEEEEEEhhhhh
Confidence 2222 235565556999999999983
No 87
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.65 E-value=4.8e-08 Score=71.04 Aligned_cols=86 Identities=27% Similarity=0.211 Sum_probs=61.0
Q ss_pred EcCCCCHHHHHHHHHHCC-----CcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCccCCcc-----c----hHHH
Q 028824 98 VKPTTTVDEALEILVEKR-----ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD-----S----TWKV 163 (203)
Q Consensus 98 v~~~~ti~ea~~~m~~~~-----~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v~-----~----~~~~ 163 (203)
+.+++++.++++.|.+++ +..+||+|++|+++|+|+.+|+++.. ....+.+++.+... . ..+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~~---~~~~v~~~~~~~~~~i~~~~~~~~~~~~ 78 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLAD---PDTPVSDIMDTDVISVSADDDQEEVARL 78 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcCC---CcchHHHHhCCCCeEEcCCCCHHHHHHH
Confidence 578899999999998877 47899999889999999999998642 22334555544321 1 1222
Q ss_pred H-----hhhce-eeCCcEEEEEehhhHHH
Q 028824 164 C-----EKCLS-FENYICLGSLSLKFLTF 186 (203)
Q Consensus 164 ~-----~~llv-~~~g~lvGiVt~~DI~~ 186 (203)
+ ..+++ +++|+++|+|+..|++.
T Consensus 79 ~~~~~~~~~~Vv~~~~~~~Gvit~~dll~ 107 (109)
T cd04606 79 FEKYDLLALPVVDEEGRLVGIITVDDVID 107 (109)
T ss_pred HHHcCCceeeeECCCCcEEEEEEhHHhhh
Confidence 2 23444 45799999999999954
No 88
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.64 E-value=6.6e-08 Score=71.91 Aligned_cols=55 Identities=29% Similarity=0.482 Sum_probs=51.7
Q ss_pred cccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 83 ~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
.+++++|.+ ++.++.+++++.++++.|.+.+...+||+|++|+++|+|+..||.+
T Consensus 58 ~~v~dim~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINR--KPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCC--CCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 679999988 8999999999999999999999999999998899999999999864
No 89
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=98.64 E-value=3.3e-07 Score=65.21 Aligned_cols=92 Identities=28% Similarity=0.409 Sum_probs=64.8
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCc---cccCccCCcc---------chH
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGR---ADNSMFPEVD---------STW 161 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~---v~~~m~~~v~---------~~~ 161 (203)
++.+++.+.++.++++.|.+.+...+||+|++++++|+++.+|+........... +.++|..+.. ...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEEAA 81 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccCCccccHHHHhcCCceecCCCcCHHHHH
Confidence 5778999999999999999999999999998899999999999997543221111 2233333221 112
Q ss_pred HHH-----hhhce-eeCCcEEEEEehhhHH
Q 028824 162 KVC-----EKCLS-FENYICLGSLSLKFLT 185 (203)
Q Consensus 162 ~~~-----~~llv-~~~g~lvGiVt~~DI~ 185 (203)
..+ ..+++ +++++++|+++.+|++
T Consensus 82 ~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~ 111 (113)
T cd02205 82 ELMLEHGIRRLPVVDDEGRLVGIVTRSDIL 111 (113)
T ss_pred HHHHHcCCCEEEEEcCCCcEEEEEEHHHhh
Confidence 222 22333 4569999999999984
No 90
>COG0517 FOG: CBS domain [General function prediction only]
Probab=98.64 E-value=2.4e-07 Score=67.62 Aligned_cols=95 Identities=27% Similarity=0.431 Sum_probs=70.6
Q ss_pred cccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCC--ccccCccCCcc------
Q 028824 87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSG--RADNSMFPEVD------ 158 (203)
Q Consensus 87 diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~--~v~~~m~~~v~------ 158 (203)
++|.+ ++.++.++.++.+|...|.++++..+||++. ++++|+||.+|+.++....... .+.++|..+..
T Consensus 3 ~~~~~--~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-~~l~Giit~~di~~~~~~~~~~~~~v~~v~~~~~~~~~~~~ 79 (117)
T COG0517 3 DIMTK--DVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAGGKRLLPVKEVMTKPVVTVDPDT 79 (117)
T ss_pred ccccC--CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccCCccccHHHhccCCcEEECCCC
Confidence 34445 7999999999999999999999999999984 4899999999999876543322 36666764321
Q ss_pred ---chHH------HHhhhceeeCC--cEEEEEehhhH
Q 028824 159 ---STWK------VCEKCLSFENY--ICLGSLSLKFL 184 (203)
Q Consensus 159 ---~~~~------~~~~llv~~~g--~lvGiVt~~DI 184 (203)
...+ ....+++.+++ +++|+++..|+
T Consensus 80 ~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di 116 (117)
T COG0517 80 PLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDI 116 (117)
T ss_pred CHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHc
Confidence 1111 12345665544 99999999997
No 91
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.64 E-value=1.1e-07 Score=68.09 Aligned_cols=68 Identities=28% Similarity=0.449 Sum_probs=60.6
Q ss_pred cceEecccccCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHh
Q 028824 68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138 (203)
Q Consensus 68 ~g~~~~~~l~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll 138 (203)
.|.++.+++........+.++|.+ ++.++++++++.++++.|.+++...+||+|+ |+++|+||.+|++
T Consensus 36 ~Giv~~~~l~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~ 103 (105)
T cd04599 36 VGIITSRDVRRAHPNRLVADAMTR--EVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA 103 (105)
T ss_pred EEEEehHHhhcccccCCHHHHccC--CCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence 688888887554455679999988 8999999999999999999999999999997 9999999999986
No 92
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.63 E-value=1.5e-07 Score=68.86 Aligned_cols=91 Identities=15% Similarity=0.259 Sum_probs=63.3
Q ss_pred CeEEEcCCCCHHHHHHHHHHCC-CcEEEEEeCCCeEEEEEehHHHhhchhhc---CCCccccCccCCcc--------c--
Q 028824 94 ELHVVKPTTTVDEALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLALDSIS---GSGRADNSMFPEVD--------S-- 159 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~-~~~lPVvd~~g~lvGiVt~~Dll~~~~~~---~~~~v~~~m~~~v~--------~-- 159 (203)
++.++.++.++.++++.|.+++ ...++|+| +|+++|+|+..|++++.... ....+.++|..... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~l~ 80 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTAIGKDLSDLPIGEVMTQPVVTLQESEIQDIF 80 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHhcCCCccccCHHHhcCCCcEEEecccccCHH
Confidence 5678999999999999998888 66777777 58999999999998753221 12344455543321 1
Q ss_pred -hHHHH-----hhhcee-eCCcEEEEEehhhHH
Q 028824 160 -TWKVC-----EKCLSF-ENYICLGSLSLKFLT 185 (203)
Q Consensus 160 -~~~~~-----~~llv~-~~g~lvGiVt~~DI~ 185 (203)
....+ ..+++. ++|+++|+|+.+|++
T Consensus 81 ~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~ 113 (115)
T cd04620 81 TALSLFRQHQIRHLPVLDDQGQLIGLVTAESIR 113 (115)
T ss_pred HHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhh
Confidence 11122 234444 568999999999994
No 93
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.63 E-value=1.5e-07 Score=69.50 Aligned_cols=91 Identities=25% Similarity=0.215 Sum_probs=64.3
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc-------------CCCccccCccCCcc--
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS-------------GSGRADNSMFPEVD-- 158 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~-------------~~~~v~~~m~~~v~-- 158 (203)
++.++++++++.++++.|.+++++.+||+|+ |+++|+++..|+++..... ....+.++|..+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPITV 80 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCCCeee
Confidence 5788999999999999999999999999996 9999999999998643210 01233444443321
Q ss_pred ---c----hHHHH-----hhhce-eeCCcEEEEEehhhHH
Q 028824 159 ---S----TWKVC-----EKCLS-FENYICLGSLSLKFLT 185 (203)
Q Consensus 159 ---~----~~~~~-----~~llv-~~~g~lvGiVt~~DI~ 185 (203)
. ..+.+ ..+++ +++|+++|+++..|++
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll 120 (122)
T cd04637 81 SPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLL 120 (122)
T ss_pred CCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhh
Confidence 1 12222 22434 4568999999999994
No 94
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.62 E-value=2.4e-07 Score=71.25 Aligned_cols=47 Identities=38% Similarity=0.580 Sum_probs=43.4
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~ 141 (203)
++.++++++++.++++.|.+.+++.+||+|+ |+++|+++..|+++..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~ 48 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLL 48 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHH
Confidence 5788999999999999999999999999997 9999999999998653
No 95
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.61 E-value=5.9e-08 Score=71.76 Aligned_cols=72 Identities=19% Similarity=0.366 Sum_probs=58.7
Q ss_pred cceEecccccC------CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC---CeEEEEEehHHHh
Q 028824 68 SGTLTANSAAP------SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLL 138 (203)
Q Consensus 68 ~g~~~~~~l~~------~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~---g~lvGiVt~~Dll 138 (203)
-|.++..++.. .....+++++|.+..++.++.+++++.++++.|.+++++.+||+|++ |+++|+||..|+.
T Consensus 37 ~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~ 116 (118)
T cd04617 37 VGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNIT 116 (118)
T ss_pred EEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhhee
Confidence 57777666521 23356788999732268899999999999999999999999999977 6999999999987
Q ss_pred h
Q 028824 139 A 139 (203)
Q Consensus 139 ~ 139 (203)
+
T Consensus 117 ~ 117 (118)
T cd04617 117 K 117 (118)
T ss_pred c
Confidence 5
No 96
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.61 E-value=9.6e-08 Score=70.66 Aligned_cols=57 Identities=37% Similarity=0.621 Sum_probs=52.5
Q ss_pred ccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhc
Q 028824 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (203)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~ 140 (203)
..++.++|.+ ++.++++++++.++++.|.+++.+.+||+|++|+++|+|+..|++++
T Consensus 68 ~~~i~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~~ 124 (124)
T cd04600 68 PETVGDIMSP--PVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIAA 124 (124)
T ss_pred cccHHHhccC--CCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhcC
Confidence 4478999988 89999999999999999999999999999988999999999999753
No 97
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.61 E-value=3.1e-08 Score=83.18 Aligned_cols=109 Identities=20% Similarity=0.230 Sum_probs=85.5
Q ss_pred CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeC-CCeEEEEEehHHHhhchhhc-CCCccccCccCCc
Q 028824 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD-DWKLVGLVSDYDLLALDSIS-GSGRADNSMFPEV 157 (203)
Q Consensus 80 ~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~-~g~lvGiVt~~Dll~~~~~~-~~~~v~~~m~~~v 157 (203)
..+++|+|+|.++...++++.+.++.+++..+.+...++|||+.+ .+.+.||+..+||++..... ....+.++..|.+
T Consensus 64 iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~~F~i~~lLRPav 143 (293)
T COG4535 64 IADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAEPFDIKELLRPAV 143 (293)
T ss_pred HHHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcccccHHHhcccce
Confidence 456799999999888999999999999999999999999999964 46899999999999875443 2234555555543
Q ss_pred c--------chHHHHh------hhceeeCCcEEEEEehhhHHHHH
Q 028824 158 D--------STWKVCE------KCLSFENYICLGSLSLKFLTFLL 188 (203)
Q Consensus 158 ~--------~~~~~~~------~llv~~~g~lvGiVt~~DI~~~L 188 (203)
. ...++|+ .+++++.|.+.|.||.+||+..+
T Consensus 144 ~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqI 188 (293)
T COG4535 144 VVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQI 188 (293)
T ss_pred ecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHH
Confidence 2 2234442 25677899999999999996554
No 98
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.60 E-value=1e-07 Score=69.75 Aligned_cols=70 Identities=23% Similarity=0.404 Sum_probs=58.4
Q ss_pred cceEecccccC------CCCccccccccccCCCeEEEcCC--CCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 68 SGTLTANSAAP------SSGVYTVGDFMTTKEELHVVKPT--TTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 68 ~g~~~~~~l~~------~~~~~~V~diM~~~~~~~~v~~~--~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
.|.+..+++.. .....++.++|.+ ++.++.++ +++.++++.|.+++...+||+|++|+++|+||.+|+++
T Consensus 37 ~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~--~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 37 LGIFTERDIVRLTAIGKDLSDLPIGEVMTQ--PVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred EEEEeHHHHHHHHhcCCCccccCHHHhcCC--CcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 67787776532 1123578899987 78888887 78999999999999999999998899999999999985
No 99
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.59 E-value=1.4e-07 Score=68.93 Aligned_cols=70 Identities=27% Similarity=0.377 Sum_probs=58.8
Q ss_pred cceEecccccC-----CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 68 SGTLTANSAAP-----SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 68 ~g~~~~~~l~~-----~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
.|.++..++.. .....++.++|.+ .+.++.+++++.++++.|.+++...+||+|++|+++|+||.+|++.
T Consensus 38 ~G~v~~~dl~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 38 LGTVTDGDIRRALLKGLSLDDPVSEVMNR--NPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred EEEEEcHHHHHHHhcCCCcCCCHHHhhcC--CCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 67777666421 2223578999987 7899999999999999999999999999998899999999999873
No 100
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.59 E-value=1.3e-07 Score=86.73 Aligned_cols=108 Identities=30% Similarity=0.266 Sum_probs=84.0
Q ss_pred CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHC-----CCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccC
Q 028824 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 152 (203)
Q Consensus 78 ~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~-----~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~ 152 (203)
-.+.+-+++.+|+. ++++++++.|+.+++..+++. .+..+.|+|++++++|+|+.++++.. .....+.++
T Consensus 127 l~y~e~taG~~Mt~--e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a---~~~~~i~~i 201 (451)
T COG2239 127 LSYPEDTAGRIMTT--EFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTA---EPDELLKDL 201 (451)
T ss_pred cCCChhhhhcccee--eeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcC---CcHhHHHHH
Confidence 34566789999999 999999999999999999954 47899999999999999999999854 234466677
Q ss_pred ccCCccc-----hHH----HHhh-----hc-eeeCCcEEEEEehhhHHHHHHH
Q 028824 153 MFPEVDS-----TWK----VCEK-----CL-SFENYICLGSLSLKFLTFLLIF 190 (203)
Q Consensus 153 m~~~v~~-----~~~----~~~~-----ll-v~~~g~lvGiVt~~DI~~~L~a 190 (203)
|.+.+.. ..+ .+++ ++ ++++++++|+||..|++++++.
T Consensus 202 m~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~e 254 (451)
T COG2239 202 MEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEE 254 (451)
T ss_pred hcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHH
Confidence 7765321 111 2221 33 4568899999999999999875
No 101
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.58 E-value=5.1e-07 Score=64.88 Aligned_cols=88 Identities=28% Similarity=0.398 Sum_probs=64.0
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCccCCcc---------chHHHH
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD---------STWKVC 164 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v~---------~~~~~~ 164 (203)
++.+++.+.++.++++.|.+.+...+||+|+ ++++|+++..|++... ....+.++|..... ...+.+
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~~---~~~~~~~~~~~~~~~v~~~~~l~~~~~~~ 78 (107)
T cd04610 3 DVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLGKD---PDETVEEIMSKDLVVAVPEMDIMDAARVM 78 (107)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhccC---ccccHHHhCCCCCeEECCCCCHHHHHHHH
Confidence 6788999999999999999888889999997 9999999999998531 12234444543221 122222
Q ss_pred -----hhhce-eeCCcEEEEEehhhHH
Q 028824 165 -----EKCLS-FENYICLGSLSLKFLT 185 (203)
Q Consensus 165 -----~~llv-~~~g~lvGiVt~~DI~ 185 (203)
..+++ +++|+++|+++..|++
T Consensus 79 ~~~~~~~~~Vv~~~g~~~Gvi~~~di~ 105 (107)
T cd04610 79 FRTGISKLPVVDENNNLVGIITNTDVI 105 (107)
T ss_pred HHhCCCeEeEECCCCeEEEEEEHHHhh
Confidence 23444 4578999999999994
No 102
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.58 E-value=1.5e-07 Score=68.50 Aligned_cols=70 Identities=21% Similarity=0.364 Sum_probs=59.8
Q ss_pred cceEecccccC------CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 68 SGTLTANSAAP------SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 68 ~g~~~~~~l~~------~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
-|.++.+++.. .+...++.++|.+ ++.++.+++++.++++.|.+++...+||+|++|+++|+|+..|+++
T Consensus 37 ~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 37 VGIITRYDVLSYALESEELKDAKVREVMNS--PVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred EEEEEHHHHHHhhhhhhhhcCCcHHHhccC--CceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 67777766532 1245678999987 8999999999999999999999999999998899999999999974
No 103
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.57 E-value=9.3e-08 Score=69.95 Aligned_cols=72 Identities=25% Similarity=0.399 Sum_probs=58.7
Q ss_pred cceEecccccCCC----CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 68 SGTLTANSAAPSS----GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 68 ~g~~~~~~l~~~~----~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
.|.+..+++.... ...++.++|.+...+.++.+++++.++++.|.+++.+.+||+|++|+++|+|+.+|+++
T Consensus 38 ~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 38 VGIISLADLRAIPTSQWAQTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred EEEEEHHHHHHHHHhhccccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 5788877763221 24578899975224678999999999999999999999999998899999999999874
No 104
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.57 E-value=6.8e-07 Score=64.46 Aligned_cols=89 Identities=21% Similarity=0.302 Sum_probs=64.4
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCccCCcc---------chHHHH
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD---------STWKVC 164 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v~---------~~~~~~ 164 (203)
++.++..+.++.++++.|.+.+++.+||+|++|+++|+++.++++.... .....++|..... .....+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~~---~~~~~~~~~~~~~~v~~~~~l~~~~~~~ 78 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNPE---EEQLALLMTRDPPTVSPDDDVKEAAKLM 78 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhccc---cchHHHHhcCCCceECCCCCHHHHHHHH
Confidence 5778899999999999999999999999998899999999999985321 1122333332211 122222
Q ss_pred -----hhhceeeCCcEEEEEehhhHH
Q 028824 165 -----EKCLSFENYICLGSLSLKFLT 185 (203)
Q Consensus 165 -----~~llv~~~g~lvGiVt~~DI~ 185 (203)
..+++.++|+++|+++..|++
T Consensus 79 ~~~~~~~~~Vvd~~~~~G~it~~d~~ 104 (106)
T cd04638 79 VENNIRRVPVVDDGKLVGIVTVADIV 104 (106)
T ss_pred HHcCCCEEEEEECCEEEEEEEHHHhh
Confidence 235665678999999999983
No 105
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=98.57 E-value=1.7e-07 Score=67.58 Aligned_cols=70 Identities=24% Similarity=0.470 Sum_probs=60.5
Q ss_pred cceEecccccCC-CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 68 SGTLTANSAAPS-SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 68 ~g~~~~~~l~~~-~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
.|.+...++... .....+.++|.+ ++.++++++++.++++.|.+.+...+||+|++|+++|+||.+|+++
T Consensus 38 ~G~v~~~dl~~~~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 38 LGIVSLESLEQAYKEAKSLEDIMLE--DVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred EEEEEHHHHHHHhhcCCcHhHhhcC--CceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 688888776332 234578999987 8999999999999999999999999999998899999999999874
No 106
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.56 E-value=2.3e-07 Score=82.43 Aligned_cols=112 Identities=19% Similarity=0.170 Sum_probs=85.5
Q ss_pred cCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC-CeEEEEEehHHHhhchhhcCCCc-------
Q 028824 77 APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGR------- 148 (203)
Q Consensus 77 ~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~-g~lvGiVt~~Dll~~~~~~~~~~------- 148 (203)
.-.++.++|+|+|+++.++..++.+++.+++++.+.+..+.++||..++ ++++|++..+|++++........
T Consensus 194 vLDLe~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k~d~~~~ 273 (423)
T COG4536 194 VLDLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRA 273 (423)
T ss_pred ccccccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCcccHhHHHHH
Confidence 3567889999999999899999999999999999999999999999543 67999999999999865443222
Q ss_pred -cccCccCCccch---HHHHhh------hceeeCCcEEEEEehhhHHHHH
Q 028824 149 -ADNSMFPEVDST---WKVCEK------CLSFENYICLGSLSLKFLTFLL 188 (203)
Q Consensus 149 -v~~~m~~~v~~~---~~~~~~------llv~~~g~lvGiVt~~DI~~~L 188 (203)
.+.++.|+-... ...|++ ++++|+|.+.|+||.+||++-+
T Consensus 274 a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEI 323 (423)
T COG4536 274 ADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEI 323 (423)
T ss_pred hcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHH
Confidence 223333332222 223322 6788999999999999994443
No 107
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.55 E-value=2.4e-07 Score=67.32 Aligned_cols=69 Identities=29% Similarity=0.382 Sum_probs=57.9
Q ss_pred cceEecccccC-------CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 68 SGTLTANSAAP-------SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 68 ~g~~~~~~l~~-------~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
-|.++.+++.. .....++.++|.. ++.++.+++++.++++.|.+++...+||+| +|+++|+||.+|+++
T Consensus 36 ~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 36 VGLLTFREVLQAMAQHGAGVLDTTVRAIMNP--EPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred EEEEEHHHHHHHHHhcCCchhcCCHHHHhCC--CCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 57777666531 1234579999987 789999999999999999999999999998 599999999999975
No 108
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.55 E-value=2e-07 Score=86.77 Aligned_cols=74 Identities=30% Similarity=0.324 Sum_probs=64.2
Q ss_pred cceEecccccC--CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824 68 SGTLTANSAAP--SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (203)
Q Consensus 68 ~g~~~~~~l~~--~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~ 141 (203)
-|+++..+++. .....+|+++|++..+++++++++++.+|+++|.++++..+||+|++|+++|+||.+|+++..
T Consensus 144 vGIVT~~DLr~~~~~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 144 LGIVTSRDYRISRMSLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK 219 (502)
T ss_pred EEEEEcHHhhccccCCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence 68888888742 244678999999644789999999999999999999999999999889999999999999753
No 109
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=98.55 E-value=2.4e-07 Score=66.60 Aligned_cols=69 Identities=22% Similarity=0.246 Sum_probs=59.1
Q ss_pred cceEecccccCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 68 ~g~~~~~~l~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
.|.+..+++.... ...+.++|.+ .+.++.+++++.++++.|.+++...+||+|++|+++|+|+.+|+.+
T Consensus 37 ~Giv~~~dl~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 37 LGFVTRREAARAS-GGCCGDHAEP--FKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred EEEEeHHHHHHhc-ccchhhhccc--CCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 6888887774322 2358899987 7888999999999999999999999999998899999999999874
No 110
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=98.55 E-value=1.9e-07 Score=67.53 Aligned_cols=70 Identities=31% Similarity=0.421 Sum_probs=59.6
Q ss_pred cceEecccccCC----C-CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 68 SGTLTANSAAPS----S-GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 68 ~g~~~~~~l~~~----~-~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
.|.+..+++... . ...++.++|.+ ++.++.+++++.++++.|.+.+...+||+|++|+++|+|+.+|+++
T Consensus 36 ~G~v~~~~l~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 36 LGIVTERDILRLLASGPDLQTPVGEVMSS--PLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred EEEEeHHHHHHHHhcCCCCCcCHHHhcCC--CceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 677877775221 1 45679999987 8999999999999999999999999999998899999999999874
No 111
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.54 E-value=1.4e-07 Score=70.63 Aligned_cols=70 Identities=24% Similarity=0.297 Sum_probs=56.1
Q ss_pred cceEecccccC------------CCCccccccccccCCCeEEE------cCCCCHHHHHHHHHHCCCcEEEEEeCC-CeE
Q 028824 68 SGTLTANSAAP------------SSGVYTVGDFMTTKEELHVV------KPTTTVDEALEILVEKRITGFPVIDDD-WKL 128 (203)
Q Consensus 68 ~g~~~~~~l~~------------~~~~~~V~diM~~~~~~~~v------~~~~ti~ea~~~m~~~~~~~lPVvd~~-g~l 128 (203)
-|.+...++.. .....+++++|.+ ++..+ .+++++.++++.|.+++.+.+||+|++ |++
T Consensus 37 ~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~ 114 (126)
T cd04640 37 IGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTP--KEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQI 114 (126)
T ss_pred EEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCc--hhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEE
Confidence 57787777642 2245679999986 54333 368899999999999999999999987 799
Q ss_pred EEEEehHHHhh
Q 028824 129 VGLVSDYDLLA 139 (203)
Q Consensus 129 vGiVt~~Dll~ 139 (203)
+|+||.+|+++
T Consensus 115 ~G~it~~di~~ 125 (126)
T cd04640 115 RGIISTSDIAR 125 (126)
T ss_pred EEEEeHHHHhh
Confidence 99999999975
No 112
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.52 E-value=2.1e-07 Score=67.47 Aligned_cols=69 Identities=35% Similarity=0.582 Sum_probs=58.7
Q ss_pred cceEecccccC----CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 68 SGTLTANSAAP----SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 68 ~g~~~~~~l~~----~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
-|.+...++.. .....++.++|.+ ++.++.+++++.++++.|.+++...+||+| +|+++|+||..|+++
T Consensus 37 ~G~v~~~dl~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 37 VGIISRRDVEKALRHGLGHAPVKDYMST--DVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred EEEEEHHHHHHHHhcccccCcHHHHhcC--CCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 57777666521 2245679999988 899999999999999999999999999999 799999999999874
No 113
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.52 E-value=2.8e-07 Score=67.97 Aligned_cols=57 Identities=32% Similarity=0.538 Sum_probs=52.1
Q ss_pred CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
...++.++|.+ ++.++.+++++.++++.|.+++.+.+||+|++|+++|+||..|+++
T Consensus 65 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 65 ASPTVEKIMST--PVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred ccCcHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 35578889987 8999999999999999999999999999998899999999999975
No 114
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=98.51 E-value=2.8e-07 Score=66.92 Aligned_cols=70 Identities=27% Similarity=0.348 Sum_probs=58.4
Q ss_pred cceEecccccC-------CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 68 SGTLTANSAAP-------SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 68 ~g~~~~~~l~~-------~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
.|.++..++.. .....++.++|.+ ++.++.+++++.++++.|.+++...+||++++|+++|+|+..|++.
T Consensus 36 ~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 36 VGIFTSKDIALRVVAQGLDPESTLVERVMTP--NPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred EEEEEhHHHHHHHHhcCCCcCcCCHHHhcCC--CCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 67777666521 1112578999987 8899999999999999999999999999998899999999999874
No 115
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=98.51 E-value=3.9e-07 Score=66.70 Aligned_cols=70 Identities=21% Similarity=0.376 Sum_probs=58.5
Q ss_pred cceEecccccCC------CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC--CeEEEEEehHHHhh
Q 028824 68 SGTLTANSAAPS------SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD--WKLVGLVSDYDLLA 139 (203)
Q Consensus 68 ~g~~~~~~l~~~------~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~--g~lvGiVt~~Dll~ 139 (203)
-|.+..+++... ....++.++|.+ ++.++.+++++.++++.|.+++...+||+|++ |+++|+||.+|+++
T Consensus 37 ~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 37 VGIITLPDLLRALEADEAGEPSAVDEVATP--PLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred EEEEEHHHHHHHHhcccccccccHHHhccC--CceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 677877775321 123348889987 89999999999999999999999999999987 79999999999975
No 116
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.50 E-value=3.3e-07 Score=68.08 Aligned_cols=51 Identities=20% Similarity=0.302 Sum_probs=47.0
Q ss_pred ccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHh
Q 028824 86 GDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138 (203)
Q Consensus 86 ~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll 138 (203)
.++|.. ++.++++++++.+|++.|.+++...+||+|++|+++|+||..|+.
T Consensus 71 ~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 71 LTIGTS--DVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred cccCcC--CceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence 356776 899999999999999999999999999999889999999999986
No 117
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.50 E-value=2.8e-07 Score=85.33 Aligned_cols=73 Identities=29% Similarity=0.383 Sum_probs=64.2
Q ss_pred cceEecccccCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchh
Q 028824 68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142 (203)
Q Consensus 68 ~g~~~~~~l~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~ 142 (203)
.|+++.+++.......+++++|++ ++.++++++++.+|++.|.++++..+||+|++|+++|+||.+||++...
T Consensus 133 vGIVT~rDL~~~~~~~~V~diMt~--~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~ 205 (479)
T PRK07807 133 VGVVTEADCAGVDRFTQVRDVMST--DLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATI 205 (479)
T ss_pred EEEEeHHHHhcCccCCCHHHhccC--CceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence 588887777543344679999998 8999999999999999999999999999998899999999999997643
No 118
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.50 E-value=2.9e-07 Score=85.13 Aligned_cols=73 Identities=22% Similarity=0.273 Sum_probs=65.1
Q ss_pred cceEecccccCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchh
Q 028824 68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142 (203)
Q Consensus 68 ~g~~~~~~l~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~ 142 (203)
-|+++.+++.......+++++|++ +++++++++++.+|+++|.++++..+||+|++|+++|+||.+||++...
T Consensus 131 vGIVT~rDL~~~~~~~~V~dIMt~--~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~ 203 (475)
T TIGR01303 131 VGLVTDSDLLGVDRFTQVRDIMST--DLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATI 203 (475)
T ss_pred EEEEEHHHhhcCCCCCCHHHHccC--CceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHh
Confidence 688988888544455689999998 8999999999999999999999999999998899999999999997543
No 119
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.50 E-value=4.4e-07 Score=65.89 Aligned_cols=70 Identities=37% Similarity=0.515 Sum_probs=58.0
Q ss_pred cceEeccccc-------CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 68 SGTLTANSAA-------PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 68 ~g~~~~~~l~-------~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
.|.+..+++. .......+.++|.. ++.++.+++++.++++.|.+.+...+||+|++|+++|+|+..|+++
T Consensus 36 ~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 36 VGIVTDRDIVVRAVAEGRDPDTTTVGDVMTR--GVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred EEEEEhHHHHHHHhhccCCcccCCHHHhccC--CccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 5677766542 11223359999987 8999999999999999999999999999998899999999999975
No 120
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.50 E-value=3e-07 Score=67.80 Aligned_cols=57 Identities=39% Similarity=0.612 Sum_probs=52.4
Q ss_pred CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
...++.++|.. ++.++.+++++.++++.|.+.+...+||+|++|+++|+||..|++.
T Consensus 65 ~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 65 RDVPVAEVMKT--DVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred cCcCHHHhhCC--CCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 45678999987 8999999999999999999999999999998899999999999975
No 121
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=98.50 E-value=3e-07 Score=67.27 Aligned_cols=56 Identities=39% Similarity=0.748 Sum_probs=51.8
Q ss_pred ccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
..++.++|.+ ++.++.+++++.++++.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus 66 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 66 KIKVSDIMTR--DPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred ccCHHHhccC--CCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 3578899988 8999999999999999999999999999998899999999999975
No 122
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=98.49 E-value=3.6e-07 Score=66.26 Aligned_cols=69 Identities=35% Similarity=0.473 Sum_probs=58.3
Q ss_pred cceEecccccC------CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 68 SGTLTANSAAP------SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 68 ~g~~~~~~l~~------~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
.|.+..+++.. .....++.++|.. ++.++++++++.++++.|.+++.+.+||+++ |+++|+||.+|+++
T Consensus 36 ~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 36 VGIVTDRDLRNRVVAEGLDPDTPVSEVMTA--PPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred EEEEEhHHHHHHHhccCCCccCCHHHHhCC--CCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 67777666522 1234679999987 8999999999999999999999999999987 99999999999975
No 123
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=98.49 E-value=5e-07 Score=65.14 Aligned_cols=70 Identities=33% Similarity=0.424 Sum_probs=57.0
Q ss_pred cceEecccccC-CCCccccccccccCCCeEEEcC-CCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 68 SGTLTANSAAP-SSGVYTVGDFMTTKEELHVVKP-TTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 68 ~g~~~~~~l~~-~~~~~~V~diM~~~~~~~~v~~-~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
-|.+..+++.. ......+.++|.. .+..+.. ++++.++++.|.+.+.+.+||+|++|+++|+|+.+|+++
T Consensus 38 ~G~v~~~~l~~~~~~~~~v~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 38 VGIVTNRDLRFETDLDKPVSEVMTP--ENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred EEEEEhhHeeecccCCCCHHHhccc--CceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 56677666521 2234678999977 6676666 999999999999999999999998899999999999874
No 124
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.48 E-value=3.6e-07 Score=66.41 Aligned_cols=69 Identities=35% Similarity=0.561 Sum_probs=58.6
Q ss_pred cceEecccccC--------CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 68 SGTLTANSAAP--------SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 68 ~g~~~~~~l~~--------~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
.|.++.+++.. .....++.++|.+ ++.++.+++++.++++.|.+++...+||+|+ |+++|+||.+|+++
T Consensus 37 ~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 37 VGFLSEQDCLKQLLESSYHCDGVATVRDIMTT--EVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred EEEeehHHHHHHhhhhhhccCCCccHHHHhcc--CceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 67787766531 1235678999987 7899999999999999999999999999997 99999999999975
No 125
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=98.48 E-value=3.5e-07 Score=84.00 Aligned_cols=72 Identities=17% Similarity=0.309 Sum_probs=64.3
Q ss_pred cceEecccccCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824 68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (203)
Q Consensus 68 ~g~~~~~~l~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~ 141 (203)
.|.+..+++.....+.+++++|++ ++.++.+++++.++++.|.++++..+||+|++|+++|+||.+|+++..
T Consensus 180 ~GvV~l~dLl~a~~~~~v~~im~~--~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l 251 (449)
T TIGR00400 180 KGVLSIRDLILAKPEEILSSIMRS--SVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVI 251 (449)
T ss_pred EEEEEHHHHhcCCCCCcHHHHhCC--CCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHH
Confidence 688888887444456789999998 899999999999999999999999999999999999999999999764
No 126
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.47 E-value=3e-07 Score=68.07 Aligned_cols=56 Identities=41% Similarity=0.723 Sum_probs=51.6
Q ss_pred ccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
..++.++|.+ ++.++++++++.++++.|.+.+...+||+|++|+++|+||..|+++
T Consensus 69 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 69 NEPVRSIMTR--NVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred hcCHHHHhcC--CceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 3478899987 8999999999999999999999999999998799999999999975
No 127
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=98.47 E-value=4.2e-07 Score=66.62 Aligned_cols=70 Identities=30% Similarity=0.385 Sum_probs=57.2
Q ss_pred cceEecccccC-CCCccccccccccCCCeEEEcC--CCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 68 SGTLTANSAAP-SSGVYTVGDFMTTKEELHVVKP--TTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 68 ~g~~~~~~l~~-~~~~~~V~diM~~~~~~~~v~~--~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
.|.+..+++.. ......++++|.. +..++.. ++++.++++.|.+++...+||+|++|+++|+||.+|+++
T Consensus 41 ~G~v~~~dl~~~~~~~~~v~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 41 LGIVTSRDIDFLTDSETPLSEVMTP--REVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred EEEEEhHHhhhhhccCCCHHHhcCC--CceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 67777766531 1123568899987 6777755 999999999999999999999998899999999999874
No 128
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.47 E-value=3.1e-07 Score=66.60 Aligned_cols=70 Identities=26% Similarity=0.375 Sum_probs=58.9
Q ss_pred cceEecccccC----CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 68 SGTLTANSAAP----SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 68 ~g~~~~~~l~~----~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
-|.+...++.. ......+.++|.. ++.++.+++++.++++.|.+++...+||+|++|+++|+||..|+..
T Consensus 37 ~G~v~~~~l~~~~~~~~~~~~v~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 37 VGLLTRDDLIRALAEGGPDAPVRGVMRR--DFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred EEEeeHHHHHHHHHhcCCCCcHHHHhcC--CCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 57777666522 1234579999987 8999999999999999999999999999998799999999999874
No 129
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.47 E-value=4.1e-07 Score=65.93 Aligned_cols=59 Identities=22% Similarity=0.326 Sum_probs=49.9
Q ss_pred cceEecccccCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC-CeEEEEEehHHHhh
Q 028824 68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLA 139 (203)
Q Consensus 68 ~g~~~~~~l~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~-g~lvGiVt~~Dll~ 139 (203)
-|.++.+++... + .+.++.+++++.+|++.|.+++++.+||+|++ |+++|+||.+|+++
T Consensus 38 ~Givt~~Dl~~~---------~----~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 38 VGMLTITDFILI---------L----RLVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred EEEEEHHHHhhh---------e----eeEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 577776666321 1 16789999999999999999999999999987 99999999999975
No 130
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=98.46 E-value=3.9e-07 Score=65.79 Aligned_cols=70 Identities=36% Similarity=0.528 Sum_probs=58.5
Q ss_pred cceEecccccCCCC-----ccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 68 SGTLTANSAAPSSG-----VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 68 ~g~~~~~~l~~~~~-----~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
.|.+...++..... ...+.++|.+ ++.++.+++++.++++.|.+++...+||+|++|+++|+|+..|+.+
T Consensus 36 ~G~v~~~dl~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 36 VGIVTLADIRRVPAEGREATVLVGDVMTR--DPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred EEEEEHHHHHHHHhcCcccccCHHHhccC--CCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 57777777632111 1267889988 8999999999999999999999999999998899999999999975
No 131
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=98.46 E-value=4.3e-07 Score=79.30 Aligned_cols=71 Identities=25% Similarity=0.347 Sum_probs=60.5
Q ss_pred cceEeccccc-----CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhc
Q 028824 68 SGTLTANSAA-----PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (203)
Q Consensus 68 ~g~~~~~~l~-----~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~ 140 (203)
-|.++..++. ......+++++|++ ++.++.+++++.+|++.|.+++...+||+|++|+++|+||.+|++++
T Consensus 243 iG~vt~~dl~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 243 QGVFTDGDLRRWLVGGGALTTPVNEAMTR--GGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred EEEecHHHHHHHHhCCCCcCCcHHHhcCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 5777755542 12234568999998 89999999999999999999999999999988999999999999975
No 132
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=98.45 E-value=5.9e-07 Score=65.16 Aligned_cols=70 Identities=33% Similarity=0.478 Sum_probs=58.2
Q ss_pred cceEeccccc------CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 68 SGTLTANSAA------PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 68 ~g~~~~~~l~------~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
.|.+...++. ......++.++|.+ ++.++.+++++.++++.|.+++...+||+|++|+++|+|+..||++
T Consensus 38 ~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 38 VGIFTDGDLRRALEKGLDILTLPVADVMTR--NPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred EEEechHHHHHHHhccCccccCCHHHhhcc--CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 5677755532 11223479999988 7899999999999999999999999999998899999999999975
No 133
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.44 E-value=3.2e-07 Score=69.39 Aligned_cols=56 Identities=38% Similarity=0.481 Sum_probs=51.6
Q ss_pred CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
...++.++|.+ ++.++.+++++.++++.|.+.+.+.+||+| +|+++|+||.+|+++
T Consensus 79 ~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 79 HGRKVADVMTR--PVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred cCCCHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 34678999987 899999999999999999999999999999 899999999999875
No 134
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.44 E-value=6.1e-07 Score=66.35 Aligned_cols=46 Identities=20% Similarity=0.478 Sum_probs=43.5
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
++.++.+++++.++++.|.+++.+.+||+|++|+++|+||.+|+++
T Consensus 74 ~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~ 119 (120)
T cd04641 74 GVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ 119 (120)
T ss_pred CCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence 5789999999999999999999999999998899999999999875
No 135
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=98.44 E-value=6.4e-07 Score=64.84 Aligned_cols=70 Identities=30% Similarity=0.474 Sum_probs=59.7
Q ss_pred cceEecccccC-----C-CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeC-CCeEEEEEehHHHhh
Q 028824 68 SGTLTANSAAP-----S-SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD-DWKLVGLVSDYDLLA 139 (203)
Q Consensus 68 ~g~~~~~~l~~-----~-~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~-~g~lvGiVt~~Dll~ 139 (203)
.|.+..+++.. . ....++.++|.+ ++.++.+++++.++++.|.+.+...+||+|+ +|+++|+|+.+|++.
T Consensus 37 ~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 37 VGIVSLDDIREILFDPSLYDLVVASDIMTK--PPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred EEEEEHHHHHHHHhcccccccEEHHHhccC--CCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 67788777631 1 123679999988 8999999999999999999999999999997 799999999999874
No 136
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.43 E-value=6.9e-07 Score=64.58 Aligned_cols=69 Identities=35% Similarity=0.511 Sum_probs=58.0
Q ss_pred cceEecccccC-------CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 68 SGTLTANSAAP-------SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 68 ~g~~~~~~l~~-------~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
-|.+..+++.. .....++.++|.+ ++.++.++.++.++++.|.+.+...+||+++ |+++|+|+.+|+++
T Consensus 37 ~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 37 VGIFSERDIVRKVALRGASALDTPVSEIMTR--NVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred EEEEehHHHHHHHhhcCCCccccCHHHhcCC--CcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 67777766521 1124579999987 8999999999999999999999999999987 99999999999975
No 137
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.42 E-value=5.5e-07 Score=65.36 Aligned_cols=69 Identities=33% Similarity=0.465 Sum_probs=57.8
Q ss_pred cceEecccccCC-----CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 68 SGTLTANSAAPS-----SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 68 ~g~~~~~~l~~~-----~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
.|.+..+++... .....+.++|.+ ++.++.+++++.++++.|.+++...+||+|+ |+++|+||..|++.
T Consensus 37 ~G~v~~~dl~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 37 KGVVTFTDILDLDLFESFLEKKVFNIVSQ--DVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred EEEEehHHhHHHHhhcccccCcHHHHhcC--CcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 577777775321 113478899987 8999999999999999999999999999997 99999999999874
No 138
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.42 E-value=6.1e-07 Score=68.57 Aligned_cols=55 Identities=31% Similarity=0.583 Sum_probs=50.7
Q ss_pred ccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
..+++++|.+ ++.++.+++++.++++.|.+++...+||+++ |+++|+||..|+++
T Consensus 80 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 80 PLVAEDIMTE--EIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred cccHHHhcCC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 4579999987 8899999999999999999999999999986 99999999999975
No 139
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=98.42 E-value=6.4e-07 Score=78.48 Aligned_cols=70 Identities=26% Similarity=0.307 Sum_probs=60.5
Q ss_pred cceEecccccC------CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhc
Q 028824 68 SGTLTANSAAP------SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (203)
Q Consensus 68 ~g~~~~~~l~~------~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~ 140 (203)
.|.++.+++.. .+...+|+++|++ ++.++.+++++.+|++.|.+++++.+||+| +|+++|+||..|++++
T Consensus 248 vGivt~~Dl~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~ 323 (326)
T PRK10892 248 EGIFTDGDLRRVFDMGIDLRQASIADVMTP--GGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA 323 (326)
T ss_pred EEEEecHHHHHHHhcCCCcccCCHHHhcCC--CCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence 68888776531 2335689999998 899999999999999999999999999998 5899999999999864
No 140
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.42 E-value=4.1e-07 Score=66.36 Aligned_cols=68 Identities=25% Similarity=0.428 Sum_probs=55.3
Q ss_pred cceEecccccCCC-----------CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHH
Q 028824 68 SGTLTANSAAPSS-----------GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYD 136 (203)
Q Consensus 68 ~g~~~~~~l~~~~-----------~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~D 136 (203)
-|.+..+++.... ...++.++|.+ ++.++.+++++.++++.|.+.+ .+||+|++|+++|+||..|
T Consensus 37 ~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~d 112 (116)
T cd04643 37 VGTISLTDILWKLKGLENLDLERLVDLKVIDVMNT--DVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRRE 112 (116)
T ss_pred EEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcC--CCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHH
Confidence 5777766652111 14578999988 8999999999999999998865 5999998899999999999
Q ss_pred Hhh
Q 028824 137 LLA 139 (203)
Q Consensus 137 ll~ 139 (203)
+++
T Consensus 113 il~ 115 (116)
T cd04643 113 ILK 115 (116)
T ss_pred hhc
Confidence 975
No 141
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=98.41 E-value=8.6e-07 Score=64.02 Aligned_cols=68 Identities=25% Similarity=0.376 Sum_probs=57.9
Q ss_pred cceEecccccCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 68 ~g~~~~~~l~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
-|.+..+++... ...++.++|.+ ++.+++++.++.++++.|.+++...+||+| +|+++|+||.+|+..
T Consensus 36 ~G~v~~~~l~~~-~~~~~~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 36 LGAVYLKDIENA-TYGDVVDYIVR--GIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred EEEEEHHHHhhh-cccchhhhhhc--CCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 678887776432 23458889987 789999999999999999999999999998 699999999999875
No 142
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.41 E-value=7.8e-07 Score=64.36 Aligned_cols=70 Identities=21% Similarity=0.413 Sum_probs=58.6
Q ss_pred cceEecccccCC--CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 68 SGTLTANSAAPS--SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 68 ~g~~~~~~l~~~--~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
.|.++.+++... .....+.++|.+ ++.++.+++++.++++.|.+++...+||++++|+++|+|+..|+.+
T Consensus 38 ~G~v~~~~l~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 38 VGIVTSWDISKAVARDKKSVEDIMTR--NVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred EEEEeHHHHHHHHhhCccCHHHhcCC--CCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 677877776211 122358899987 8999999999999999999999999999998899999999999864
No 143
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=98.41 E-value=1.3e-07 Score=71.16 Aligned_cols=71 Identities=20% Similarity=0.202 Sum_probs=58.7
Q ss_pred cceEecccccC------CCCccccccccccCCCeEEEcCCCCHHHHHHHHH---------HCCCcEEEEEeCCCeEEEEE
Q 028824 68 SGTLTANSAAP------SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILV---------EKRITGFPVIDDDWKLVGLV 132 (203)
Q Consensus 68 ~g~~~~~~l~~------~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~---------~~~~~~lPVvd~~g~lvGiV 132 (203)
.|.+..+++.. .....+++++|++ ++.++.+++++.++++++. +.+...+||+|++|+++|+|
T Consensus 38 ~Gii~~~dl~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Giv 115 (124)
T cd04608 38 LGMVTLGNLLSSLSSGKVQPSDPVSKALYK--QFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIV 115 (124)
T ss_pred EEEEEHHHHHHHHHHhccCCCCcHHHHhhc--cceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEE
Confidence 68888777632 3456799999998 8999999999999999653 33678889999889999999
Q ss_pred ehHHHhhc
Q 028824 133 SDYDLLAL 140 (203)
Q Consensus 133 t~~Dll~~ 140 (203)
|.+|++++
T Consensus 116 t~~Dl~~~ 123 (124)
T cd04608 116 TKIDLLSY 123 (124)
T ss_pred ehhHhhhh
Confidence 99999864
No 144
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=98.40 E-value=6.5e-07 Score=64.98 Aligned_cols=69 Identities=26% Similarity=0.334 Sum_probs=58.4
Q ss_pred cceEecccccC------CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 68 SGTLTANSAAP------SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 68 ~g~~~~~~l~~------~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
.|.+..+++.. .....++.++|.+ ++.++++++++.++++.|.+++...+||+|+ |+++|+||..|+++
T Consensus 36 ~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 36 LGIVTRTDLLDAVLLDGLPSSTPVGEIATF--PLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS 110 (111)
T ss_pred EEEEEHHHHHHHHHcCCCCCCCCHHHHhCC--CcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence 67787776532 1234578899987 8999999999999999999999999999985 89999999999875
No 145
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=98.38 E-value=1.3e-06 Score=63.25 Aligned_cols=70 Identities=21% Similarity=0.368 Sum_probs=58.2
Q ss_pred cceEecccccC----CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 68 SGTLTANSAAP----SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 68 ~g~~~~~~l~~----~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
.|.+..+++.. ......+.++|.. ++.++.+++++.++++.|.+.+...+||+|++|+++|+|+.+|+++
T Consensus 36 ~G~v~~~~l~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 36 VGIVTLSDIAHAIARGLELAKVKDVMTK--DVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred EEEEEHHHHHHHHhccccccCHHHHhcC--CceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 57777666521 1222568899987 8999999999999999999999999999998899999999999874
No 146
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.37 E-value=9.1e-07 Score=64.20 Aligned_cols=70 Identities=29% Similarity=0.368 Sum_probs=58.9
Q ss_pred cceEecccccC-----CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 68 SGTLTANSAAP-----SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 68 ~g~~~~~~l~~-----~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
-|.++.+++.. ......+.++|.+ ++.++.+++++.++++.|.+++...+||+|++|+++|+||..|+++
T Consensus 37 ~G~v~~~~l~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 37 IGIVTERDIVRAVAAGIDLDTPVSEIMTR--DLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred EEEeeHHHHHHHHhccCCCccCHHHhccC--CCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 67777766521 1234578899987 8999999999999999999999999999998899999999999874
No 147
>COG0517 FOG: CBS domain [General function prediction only]
Probab=98.37 E-value=9e-07 Score=64.49 Aligned_cols=69 Identities=38% Similarity=0.612 Sum_probs=58.7
Q ss_pred cceEecccccCCCCc----c-ccccccccCCCeEEEcCCCCHHHHHHHHHH-CCCcEEEEEeCCC-eEEEEEehHHHh
Q 028824 68 SGTLTANSAAPSSGV----Y-TVGDFMTTKEELHVVKPTTTVDEALEILVE-KRITGFPVIDDDW-KLVGLVSDYDLL 138 (203)
Q Consensus 68 ~g~~~~~~l~~~~~~----~-~V~diM~~~~~~~~v~~~~ti~ea~~~m~~-~~~~~lPVvd~~g-~lvGiVt~~Dll 138 (203)
.|.++..++...... . .+.++|+. ++.++.++.++.++.+.|.+ +++..+||+|+++ +++|++|..|++
T Consensus 42 ~Giit~~di~~~~~~~~~~~~~v~~v~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 42 VGIITERDILRALAAGGKRLLPVKEVMTK--PVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred EEEEEHHHHHHHHhccCCccccHHHhccC--CcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 788888887333221 1 58999998 89999999999999999999 7999999999886 999999999973
No 148
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.36 E-value=1e-06 Score=76.38 Aligned_cols=76 Identities=32% Similarity=0.369 Sum_probs=65.2
Q ss_pred ccccccceEecccccC-----------CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEE
Q 028824 63 SAVFASGTLTANSAAP-----------SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGL 131 (203)
Q Consensus 63 ~~~~~~g~~~~~~l~~-----------~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGi 131 (203)
.+.. .|+++..++.+ -...-+++.+|++ .+.++.++++..|++-.+.+.+...+||+|++|+++||
T Consensus 285 ~~rl-~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~imt~--~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGI 361 (382)
T COG3448 285 HRRL-VGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIMTT--PVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGI 361 (382)
T ss_pred ccce-eeeeeHHHHhhccCcchHHHhhccCCCcccccccC--cceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEE
Confidence 3444 67777777644 2356789999998 79999999999999999999999999999999999999
Q ss_pred EehHHHhhch
Q 028824 132 VSDYDLLALD 141 (203)
Q Consensus 132 Vt~~Dll~~~ 141 (203)
||..|++.+.
T Consensus 362 vsQtDliaal 371 (382)
T COG3448 362 VSQTDLIAAL 371 (382)
T ss_pred eeHHHHHHHH
Confidence 9999999754
No 149
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.36 E-value=1.5e-06 Score=62.57 Aligned_cols=69 Identities=32% Similarity=0.462 Sum_probs=58.0
Q ss_pred cceEecccccCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 68 ~g~~~~~~l~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
-|.+..+++........+.++|.. ++.++.+++++.++++.|.+++...+||+|+ |+++|+|+.+|+++
T Consensus 37 ~g~v~~~~l~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~ 105 (106)
T cd04638 37 VGIITRKDLLRNPEEEQLALLMTR--DPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-GKLVGIVTVADIVR 105 (106)
T ss_pred EEEEEHHHHHhccccchHHHHhcC--CCceECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 577777776433334567888987 7899999999999999999999999999984 79999999999874
No 150
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.36 E-value=1.3e-06 Score=63.39 Aligned_cols=69 Identities=30% Similarity=0.588 Sum_probs=58.0
Q ss_pred cceEecccccC-------CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 68 SGTLTANSAAP-------SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 68 ~g~~~~~~l~~-------~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
.|.+..+++.. .....++.++|.+ ++.++.+++++.++++.|.+++...+||+|++ +++|+|+.+|+++
T Consensus 36 ~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 36 VGIITERDLVKKVVSRNLKPREVPVGEVMST--PLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred EEEEEHHHHHHHHhhccCCcccCCHHHhcCC--CcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 67787766532 1234678999987 89999999999999999999999999999865 9999999999874
No 151
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=98.33 E-value=1.5e-06 Score=63.83 Aligned_cols=56 Identities=38% Similarity=0.595 Sum_probs=51.2
Q ss_pred CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
...++.++|.. ++.++.+++++.++++.|.+++...+||+|+ |+++|+|+.+|+++
T Consensus 65 ~~~~v~~~~~~--~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 65 LKMPVKEIMTK--DVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred cCcCHHHHhhC--CCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 34678899988 8999999999999999999999999999986 99999999999975
No 152
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.33 E-value=1.4e-06 Score=65.61 Aligned_cols=54 Identities=35% Similarity=0.581 Sum_probs=50.2
Q ss_pred cccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 83 ~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
.++.++|.+ ++..+.+++++.++++.|.+.+...+||+|+ |+++|+||..|+++
T Consensus 78 ~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 78 KKVEEIMTK--KVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred CCHHHhccC--CceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 378899987 8999999999999999999999999999997 99999999999975
No 153
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=98.32 E-value=1.3e-06 Score=77.22 Aligned_cols=72 Identities=22% Similarity=0.342 Sum_probs=69.0
Q ss_pred cceEecccccCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824 68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (203)
Q Consensus 68 ~g~~~~~~l~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~ 141 (203)
.|.++.+++..+....++..+|++ +++++.+.+++..+.+.|.-.++.-+||+|++.+++|+||..|+++..
T Consensus 234 vGvVt~rDv~~~~~~t~ieKVMtk--np~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~l 305 (432)
T COG4109 234 VGVVTMRDVLDKKPSTTIEKVMTK--NPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSL 305 (432)
T ss_pred EEEEEehhhhcCCCCccHHHHhcc--CCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHH
Confidence 789999999999999999999999 999999999999999999999999999999999999999999999764
No 154
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.32 E-value=1.8e-06 Score=64.49 Aligned_cols=51 Identities=22% Similarity=0.420 Sum_probs=46.7
Q ss_pred cccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 87 diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
+.|.. ++.++++++++.++++.|.+++.+.+||+|++|+++|+||..|+++
T Consensus 75 ~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 75 GVKSR--PLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred ccccC--CCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 46666 7899999999999999999999999999998899999999999974
No 155
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.32 E-value=1.4e-06 Score=81.21 Aligned_cols=75 Identities=20% Similarity=0.321 Sum_probs=63.8
Q ss_pred cceEecccccC-CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchh
Q 028824 68 SGTLTANSAAP-SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142 (203)
Q Consensus 68 ~g~~~~~~l~~-~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~ 142 (203)
.|.++.+++.. .....+|.++|++..+++++.+++++.+|++.|.++++..+||+|++++++|+||.+||++...
T Consensus 147 vGIVT~~DL~~v~~~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~ 222 (505)
T PLN02274 147 LGYVTKRDWDFVNDRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKG 222 (505)
T ss_pred EEEEEHHHHhhccccCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence 67888777732 2345789999997223889999999999999999999999999999999999999999997654
No 156
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=98.31 E-value=1e-06 Score=63.85 Aligned_cols=69 Identities=22% Similarity=0.240 Sum_probs=55.6
Q ss_pred cceEecccccCC----CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 68 SGTLTANSAAPS----SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 68 ~g~~~~~~l~~~----~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
.|.++.+++... .....+.++|. ++.++.+++++.++++.|.+++...+||+|++|+++|+||..|+++
T Consensus 38 ~G~v~~~~l~~~~~~~~~~~~~~~~~~---~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 38 IGVVHVKDLLRALAEGEEDLDLRDLLR---PPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred EEEEEHHHHHHHHHcCCCcCCHHHHhc---CCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 677877665221 11135667663 5889999999999999999999999999998899999999999874
No 157
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.30 E-value=1.5e-06 Score=63.94 Aligned_cols=56 Identities=38% Similarity=0.657 Sum_probs=51.3
Q ss_pred CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
...++.++|.. ++.++.+++++.++++.|.+.+.+.+||+|+ |+++|+|+..|+++
T Consensus 65 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 65 RNLPVSDIMTR--PVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred hccCHHHHccC--CceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence 35578899987 8999999999999999999999999999997 99999999999975
No 158
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.30 E-value=1.7e-06 Score=63.76 Aligned_cols=55 Identities=36% Similarity=0.582 Sum_probs=51.1
Q ss_pred cccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 83 ~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
..+.++|.+ ++.++.+++++.++++.|.+++...+||+|++|+++|+++..|+++
T Consensus 67 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 67 RRAHQIMTR--DPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred hHHHHhhcC--CCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 468899987 8999999999999999999999999999998899999999999975
No 159
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.30 E-value=2.1e-06 Score=61.71 Aligned_cols=45 Identities=36% Similarity=0.540 Sum_probs=42.8
Q ss_pred eEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 95 ~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
+.++.+++++.++++.|.+++.+.+||+|++|+++|+||.+|+++
T Consensus 51 ~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~ 95 (96)
T cd04614 51 VVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred cEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 788999999999999999999999999998899999999999985
No 160
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=98.28 E-value=1.2e-06 Score=63.90 Aligned_cols=64 Identities=19% Similarity=0.367 Sum_probs=54.2
Q ss_pred cceEecccccCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 68 ~g~~~~~~l~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
.|.+..+++...... +|.+ ++.++++++++.++++.|.+++...+||++ +|+++|+||.+|+++
T Consensus 41 ~G~v~~~dl~~~~~~-----~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 41 VGYILRSQLVVALKN-----YIDP--SPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK 104 (105)
T ss_pred EEEEeHHHHHHHHHH-----hccC--CCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence 688887776322211 8887 899999999999999999999999999995 789999999999975
No 161
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.28 E-value=1.7e-06 Score=80.39 Aligned_cols=74 Identities=31% Similarity=0.395 Sum_probs=63.9
Q ss_pred cceEecccccC-CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824 68 SGTLTANSAAP-SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (203)
Q Consensus 68 ~g~~~~~~l~~-~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~ 141 (203)
.|+++.+++.. .....+++++|++.+++++++++.++.|++++|.++++..+||+|++++++|+||.+||++..
T Consensus 143 vGIVt~~DL~~~~~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 143 LGIVTSRDIDFVKDKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR 217 (495)
T ss_pred EEEEEHHHHhhcccCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcc
Confidence 68888888732 234568999998655789999999999999999999999999999999999999999999763
No 162
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.24 E-value=3.4e-06 Score=64.83 Aligned_cols=49 Identities=29% Similarity=0.367 Sum_probs=45.4
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchh
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~ 142 (203)
++.++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|++++..
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~ 50 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLF 50 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHh
Confidence 5789999999999999999999999999999999999999999997643
No 163
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=98.22 E-value=4.6e-06 Score=50.46 Aligned_cols=46 Identities=41% Similarity=0.710 Sum_probs=42.0
Q ss_pred eEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhc
Q 028824 95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (203)
Q Consensus 95 ~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~ 140 (203)
+.++.+++++.++++.|.++++..+||++++++++|+++..++.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~ 47 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKA 47 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHh
Confidence 5678999999999999999999999999988999999999998753
No 164
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.21 E-value=3.3e-06 Score=62.95 Aligned_cols=56 Identities=27% Similarity=0.432 Sum_probs=50.1
Q ss_pred ccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEe--CCCeEEEEEehHHHhh
Q 028824 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID--DDWKLVGLVSDYDLLA 139 (203)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd--~~g~lvGiVt~~Dll~ 139 (203)
...+.++|.+ +++++.+++++.++++.|.+++...+||++ ++|+++|+||.+|+++
T Consensus 70 ~~~~~~~~~~--~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 70 DLPVYDAMSS--PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred cCcHHHHhcC--CCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 3568899987 899999999999999999999999999984 4689999999999875
No 165
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=98.21 E-value=2.7e-06 Score=78.97 Aligned_cols=73 Identities=26% Similarity=0.326 Sum_probs=65.9
Q ss_pred cceEecccc------cCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824 68 SGTLTANSA------APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (203)
Q Consensus 68 ~g~~~~~~l------~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~ 141 (203)
.|+++.+++ ..+..+.+|+++|+. +++++..++-+.||+-.|.++++.++||++ +|+++|+||..||+++.
T Consensus 193 ~GIvT~~dl~~~v~~~g~~~~~~V~evmT~--p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~ 269 (610)
T COG2905 193 LGIVTRKDLRSRVIADGRSKTQKVSEVMTS--PVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLF 269 (610)
T ss_pred cceeehHHHHHHHHhcCCCcccchhhhhcc--CceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhh
Confidence 679998887 355677899999999 999999999999999999999999999997 69999999999999876
Q ss_pred hh
Q 028824 142 SI 143 (203)
Q Consensus 142 ~~ 143 (203)
..
T Consensus 270 s~ 271 (610)
T COG2905 270 SQ 271 (610)
T ss_pred CC
Confidence 54
No 166
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=98.20 E-value=2.9e-06 Score=79.99 Aligned_cols=72 Identities=21% Similarity=0.343 Sum_probs=61.0
Q ss_pred cceEecccccC------CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC--CeEEEEEehHHHhh
Q 028824 68 SGTLTANSAAP------SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD--WKLVGLVSDYDLLA 139 (203)
Q Consensus 68 ~g~~~~~~l~~------~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~--g~lvGiVt~~Dll~ 139 (203)
.|.++.+++.. .....++.|+|++ ++.++++++++.++++.|.+++.+.+||+|++ ++++|+||.+|+++
T Consensus 491 vGiVt~~dL~~~l~~~~~~~~~~v~dim~~--~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~ 568 (574)
T PRK01862 491 RGAVALKDITSDLLDKRDTTDKTAADYAHT--PFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLD 568 (574)
T ss_pred EEEEEHHHHHHHhhcccccccchHHHhccC--CCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHH
Confidence 68888777633 1123578999988 89999999999999999999999999999876 58999999999997
Q ss_pred ch
Q 028824 140 LD 141 (203)
Q Consensus 140 ~~ 141 (203)
..
T Consensus 569 ~l 570 (574)
T PRK01862 569 AY 570 (574)
T ss_pred HH
Confidence 54
No 167
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.19 E-value=2.8e-06 Score=79.61 Aligned_cols=59 Identities=29% Similarity=0.540 Sum_probs=55.1
Q ss_pred CCccccccccc-cCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhc
Q 028824 80 SGVYTVGDFMT-TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (203)
Q Consensus 80 ~~~~~V~diM~-~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~ 140 (203)
....+|+++|+ + ++.++++++++.++.+.|.+++++.+||+|++|+++|+||.+|+++.
T Consensus 243 ~~~~~V~~iM~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~ 302 (546)
T PRK14869 243 NQSIPVSYIMTTE--DLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSP 302 (546)
T ss_pred hcCCCHHHhccCC--CcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhcc
Confidence 45678999999 6 89999999999999999999999999999999999999999999964
No 168
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.17 E-value=3.5e-06 Score=78.96 Aligned_cols=57 Identities=33% Similarity=0.462 Sum_probs=53.5
Q ss_pred ccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhc
Q 028824 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (203)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~ 140 (203)
..+|+|+|.+ ++.++++++++.+|++.|.+++++.+||+|++|+++|+|+..|+.+.
T Consensus 67 ~~~V~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~ 123 (546)
T PRK14869 67 KPQVRDLEID--KPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARA 123 (546)
T ss_pred CCcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHH
Confidence 3689999998 89999999999999999999999999999989999999999999864
No 169
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.16 E-value=4.6e-06 Score=76.72 Aligned_cols=72 Identities=31% Similarity=0.436 Sum_probs=62.7
Q ss_pred cceEecccccC-CCCccccccccc-cCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824 68 SGTLTANSAAP-SSGVYTVGDFMT-TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (203)
Q Consensus 68 ~g~~~~~~l~~-~~~~~~V~diM~-~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~ 141 (203)
-|.++.+++.. .....+++++|+ . ++.++++++++.++++.|.+++...+||+|++|+++|+||.+||++..
T Consensus 127 vGIVt~rDL~~~~~~~~~V~dvm~~~--~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 127 VGIITKRDIRFVKDKGKPVSEVMTRE--EVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRR 200 (450)
T ss_pred EEEEEHHHHhhhhcCCCCHHHhhCCC--CCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcc
Confidence 68888888732 223567999998 4 799999999999999999999999999999999999999999999764
No 170
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.15 E-value=3.7e-06 Score=61.58 Aligned_cols=70 Identities=16% Similarity=0.241 Sum_probs=56.4
Q ss_pred cceEecccccCC---------CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCc---EEEEEeCCCeEEEEEehH
Q 028824 68 SGTLTANSAAPS---------SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRIT---GFPVIDDDWKLVGLVSDY 135 (203)
Q Consensus 68 ~g~~~~~~l~~~---------~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~---~lPVvd~~g~lvGiVt~~ 135 (203)
.|.+..+++... .....+.++|.+ ++.++.+++++.++++.|.+++.. ..+|++++|+++|+|+..
T Consensus 37 ~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~ 114 (119)
T cd04598 37 VGLIMREALMELLSTPYGRALYGKKPVSEVMDP--DPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVK 114 (119)
T ss_pred EEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCC--CcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHH
Confidence 577776665211 135679999988 899999999999999999988753 446888889999999999
Q ss_pred HHhh
Q 028824 136 DLLA 139 (203)
Q Consensus 136 Dll~ 139 (203)
|+++
T Consensus 115 di~~ 118 (119)
T cd04598 115 DLLR 118 (119)
T ss_pred HHhc
Confidence 9874
No 171
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=98.13 E-value=4e-06 Score=60.24 Aligned_cols=68 Identities=25% Similarity=0.367 Sum_probs=54.1
Q ss_pred cceEecccccCC----C--CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 68 SGTLTANSAAPS----S--GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 68 ~g~~~~~~l~~~----~--~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
-|.++.+++... . ....+.++|.+ ++.++++++++.+++++|.+ . ..+||++++|+++|+||.+|+++
T Consensus 36 ~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~ 109 (110)
T cd04609 36 VGSIDESDLLDALIEGKAKFSLPVREVMGE--PLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLK 109 (110)
T ss_pred EEEEeHHHHHHHHhccccccCcCHHHHhcC--CCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhc
Confidence 678887775221 1 13578899987 78999999999999999988 3 34788988899999999999975
No 172
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=98.07 E-value=1.1e-05 Score=57.27 Aligned_cols=53 Identities=43% Similarity=0.771 Sum_probs=49.0
Q ss_pred cccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 85 V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
+.++|.. ++.++.+++++.++++.|.+.+...+||+|++|+++|+++..|+++
T Consensus 60 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 60 VGDVMTR--DVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred HHHHhcC--CceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 5678887 8999999999999999999999999999998899999999999875
No 173
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.05 E-value=1.2e-05 Score=74.75 Aligned_cols=72 Identities=35% Similarity=0.492 Sum_probs=62.1
Q ss_pred cceEeccccc-CCCCccccccccc-cCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824 68 SGTLTANSAA-PSSGVYTVGDFMT-TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (203)
Q Consensus 68 ~g~~~~~~l~-~~~~~~~V~diM~-~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~ 141 (203)
.|.++.+++. ......++.++|+ + +++++.+++++.++++.|.+++++.+||+|++|+++|+||.+||++..
T Consensus 131 vGiVt~~DL~~~~~~~~~V~dim~~~--~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~ 204 (486)
T PRK05567 131 VGIITNRDVRFETDLSQPVSEVMTKE--RLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAE 204 (486)
T ss_pred EEEEEHHHhhhcccCCCcHHHHcCCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhh
Confidence 6888888773 2223457999998 5 789999999999999999999999999999999999999999999754
No 174
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=98.00 E-value=1.4e-05 Score=67.80 Aligned_cols=64 Identities=33% Similarity=0.401 Sum_probs=54.5
Q ss_pred cceEecccccC-----CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEe
Q 028824 68 SGTLTANSAAP-----SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVS 133 (203)
Q Consensus 68 ~g~~~~~~l~~-----~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt 133 (203)
-|.++.+++.. .....+++++|.+ ++.++.+++++.+|++.|.+++...+||+|++|+++|+|+
T Consensus 200 ~Givt~~dl~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 200 VGVFTDGDLRRALLGGGSLKSEVRDFMTL--GPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred EEEEEcHHHHHHHhcCCcccCcHHHhCCC--CCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 57787766522 1235679999988 8999999999999999999999999999998899999985
No 175
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=97.98 E-value=9.3e-06 Score=74.64 Aligned_cols=71 Identities=17% Similarity=0.340 Sum_probs=65.9
Q ss_pred cceEecccccCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhc
Q 028824 68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (203)
Q Consensus 68 ~g~~~~~~l~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~ 140 (203)
.|.+..+.+.....+..++++|.+ +++++.+++..+++++.+.+++.-.+||+|++++++|+||..|+...
T Consensus 181 ~Gvvsl~~Ll~a~~~~~i~~im~~--~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidv 251 (451)
T COG2239 181 LGVVSLRDLLTAEPDELLKDLMED--DVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDV 251 (451)
T ss_pred EEEeeHHHHhcCCcHhHHHHHhcc--cceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHH
Confidence 788888888767778899999998 89999999999999999999999999999999999999999999965
No 176
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.96 E-value=2.5e-05 Score=59.91 Aligned_cols=55 Identities=31% Similarity=0.642 Sum_probs=50.3
Q ss_pred ccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
...+.++|.. ++.++.+++++.++++.|.+.+...+||+++ |+++|+|+.+|++.
T Consensus 88 ~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 88 KMKVRDIMTK--KVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred cCCHHHHcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 4568889987 8999999999999999999999999999987 99999999999874
No 177
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=97.95 E-value=1.7e-05 Score=69.02 Aligned_cols=74 Identities=26% Similarity=0.291 Sum_probs=60.9
Q ss_pred cccccceEecccccCC----CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 64 AVFASGTLTANSAAPS----SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 64 ~~~~~g~~~~~~l~~~----~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
... -|.+..+++... .....+.++|.+ +.++++++++.++++.|.+++...+||+|+.|.++|+||.+||+.
T Consensus 111 d~i-iGiv~~kDll~~~~~~~~~~~l~~l~r~---~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle 186 (292)
T PRK15094 111 DHI-EGILMAKDLLPFMRSDAEAFSMDKVLRQ---AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILE 186 (292)
T ss_pred CcE-EEEEEHHHHHhHhhccCCcCCHHHHcCC---CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHH
Confidence 345 788888777321 123458899976 568999999999999999999999999999899999999999997
Q ss_pred ch
Q 028824 140 LD 141 (203)
Q Consensus 140 ~~ 141 (203)
..
T Consensus 187 ~i 188 (292)
T PRK15094 187 LI 188 (292)
T ss_pred HH
Confidence 53
No 178
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=97.92 E-value=4.1e-05 Score=69.13 Aligned_cols=97 Identities=27% Similarity=0.378 Sum_probs=68.5
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCc-----cc------cCccCCc-----
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGR-----AD------NSMFPEV----- 157 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~-----v~------~~m~~~v----- 157 (203)
++..+.+++++.+|++.|.+++++.+||+|++|+.+|.++..|+........... +. ..-+..+
T Consensus 238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc~~ 317 (381)
T KOG1764|consen 238 NIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGVVTCRP 317 (381)
T ss_pred hheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcCccCccchhHHHHHhhhcccccCccEEEee
Confidence 5889999999999999999999999999999999999999999996543321111 11 0111111
Q ss_pred -cchHHHH--------hhh-ceeeCCcEEEEEehhhHHHHHHH
Q 028824 158 -DSTWKVC--------EKC-LSFENYICLGSLSLKFLTFLLIF 190 (203)
Q Consensus 158 -~~~~~~~--------~~l-lv~~~g~lvGiVt~~DI~~~L~a 190 (203)
.+.++.+ .++ +++++|.++|+|+..|++..+..
T Consensus 318 ~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~ 360 (381)
T KOG1764|consen 318 TSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVL 360 (381)
T ss_pred cchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHh
Confidence 1122222 223 44556999999999999776664
No 179
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=97.86 E-value=3.7e-05 Score=69.95 Aligned_cols=86 Identities=19% Similarity=0.132 Sum_probs=67.8
Q ss_pred cccccccccccCCccccccceEecccccCCC--CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCe
Q 028824 50 ATSSDRVSALRRSSAVFASGTLTANSAAPSS--GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWK 127 (203)
Q Consensus 50 ~~~~~~~~~~r~~~~~~~~g~~~~~~l~~~~--~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~ 127 (203)
++|..||-. ++.... -|.+..+++.... ...++.++|.+ +.++++++++.++++.|.+++.+..+|+|+.|.
T Consensus 223 ~~sR~PV~~--~~~d~i-vGiv~~kDll~~~~~~~~~l~~~~~~---~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~ 296 (408)
T TIGR03520 223 GYSRIPVYK--ETIDNI-TGVLYIKDLLPHLNKKNFDWQSLLRE---PYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGG 296 (408)
T ss_pred CCCEEEEEc--CCCCce-EEEEEHHHHHhHhccCCCCHHHHcCC---CeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCC
Confidence 344444543 344556 8999988884222 23457888865 789999999999999999999999999999899
Q ss_pred EEEEEehHHHhhch
Q 028824 128 LVGLVSDYDLLALD 141 (203)
Q Consensus 128 lvGiVt~~Dll~~~ 141 (203)
.+|+||.+||+...
T Consensus 297 ~~GiVT~eDileei 310 (408)
T TIGR03520 297 TSGLVTLEDIIEEI 310 (408)
T ss_pred EEEEEEHHHHHHHH
Confidence 99999999999753
No 180
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=97.64 E-value=8.2e-05 Score=67.11 Aligned_cols=90 Identities=26% Similarity=0.258 Sum_probs=73.8
Q ss_pred ccccccccccccCCccccccceEecccc-cCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCe
Q 028824 49 LATSSDRVSALRRSSAVFASGTLTANSA-APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWK 127 (203)
Q Consensus 49 ~~~~~~~~~~~r~~~~~~~~g~~~~~~l-~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~ 127 (203)
-+|+..|+.---.-+... -|+++.+++ ..+-....+.++|++ +.++.+.+.+++++-+++.+++...+||+|++|+
T Consensus 137 ~gF~g~pvTe~g~~~~KL-vG~vtsrdi~f~~~~~~~~~~vmt~--~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~ge 213 (503)
T KOG2550|consen 137 HGFSGIPVTEDGKRGSKL-VGIITSRDIQFLEDNSLLVSDVMTK--NPVTGAQGITLKEANEILKKIKKGKLPVVDDKGE 213 (503)
T ss_pred ccccccccccCCccccee-EEEEehhhhhhhhcccchhhhhccc--ccccccccccHHHHHHHHHhhhcCCcceeccCCc
Confidence 456667766433344555 789998888 334556789999999 6789999999999999999999999999999999
Q ss_pred EEEEEehHHHhhch
Q 028824 128 LVGLVSDYDLLALD 141 (203)
Q Consensus 128 lvGiVt~~Dll~~~ 141 (203)
+|-+|+..||.+..
T Consensus 214 lva~~~rtDl~k~~ 227 (503)
T KOG2550|consen 214 LVAMLSRTDLMKNR 227 (503)
T ss_pred eeeeeehhhhhhhc
Confidence 99999999999753
No 181
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.54 E-value=0.00017 Score=64.76 Aligned_cols=72 Identities=22% Similarity=0.362 Sum_probs=57.7
Q ss_pred cceEecccccCC-CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchh
Q 028824 68 SGTLTANSAAPS-SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142 (203)
Q Consensus 68 ~g~~~~~~l~~~-~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~ 142 (203)
.|.+..+.+... .....+.+.|.. .+.++.+++++.+++..|.+++.. +||+|++|+++|+|+..+++++..
T Consensus 286 ~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~ 358 (363)
T TIGR01186 286 VGVVDVESIKQARKKAQGLQDVLID--DIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALY 358 (363)
T ss_pred EEEEeHHHHHHHhhcCCchhhhhcc--CCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHH
Confidence 455555554221 123357788877 788999999999999999999998 999999999999999999997653
No 182
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=97.51 E-value=0.00018 Score=65.79 Aligned_cols=68 Identities=16% Similarity=0.290 Sum_probs=54.0
Q ss_pred cceEecccccC------CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhc
Q 028824 68 SGTLTANSAAP------SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (203)
Q Consensus 68 ~g~~~~~~l~~------~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~ 140 (203)
-|.++.+++.. .....++.++|.+ ++.++++++++.++++.|.+++ .+||+++|+++|+||.+||+++
T Consensus 379 ~Givt~~dl~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~ 452 (454)
T TIGR01137 379 LGSVTLRELLSALFAGKANPDDAVSKVMSK--KFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSF 452 (454)
T ss_pred EEEEEHHHHHHHHhccCCCcCCCHHHhcCC--CCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHh
Confidence 67888777632 2234579999988 8899999999999999998764 3555557999999999999864
No 183
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=97.50 E-value=0.00011 Score=66.20 Aligned_cols=89 Identities=28% Similarity=0.282 Sum_probs=69.3
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeC---CCeEEEEEehHHHhhchhhcCCCccccCccCCccc-----hH----
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS-----TW---- 161 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~---~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v~~-----~~---- 161 (203)
+++++.++.++.++++....+++..+||.++ ..||+|+||.+|+-.. ......+.++|.+.... ..
T Consensus 117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~--~~~~~~~~~vmt~~~~~~~~gi~l~~~n 194 (503)
T KOG2550|consen 117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL--EDNSLLVSDVMTKNPVTGAQGITLKEAN 194 (503)
T ss_pred CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh--hcccchhhhhcccccccccccccHHHHH
Confidence 5789999999999999999999999999964 3689999999999765 34556777888775421 11
Q ss_pred HHH-----hhh-ceeeCCcEEEEEehhhH
Q 028824 162 KVC-----EKC-LSFENYICLGSLSLKFL 184 (203)
Q Consensus 162 ~~~-----~~l-lv~~~g~lvGiVt~~DI 184 (203)
+.+ .++ +++++|.+|-+|+++|+
T Consensus 195 eiL~~~kkGkl~iv~~~gelva~~~rtDl 223 (503)
T KOG2550|consen 195 EILKKIKKGKLPVVDDKGELVAMLSRTDL 223 (503)
T ss_pred HHHHhhhcCCcceeccCCceeeeeehhhh
Confidence 111 224 45678999999999999
No 184
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=97.49 E-value=0.00018 Score=57.41 Aligned_cols=83 Identities=22% Similarity=0.297 Sum_probs=62.2
Q ss_pred ccccccccccccCCccccccceEeccccc-------CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEE
Q 028824 49 LATSSDRVSALRRSSAVFASGTLTANSAA-------PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPV 121 (203)
Q Consensus 49 ~~~~~~~~~~~r~~~~~~~~g~~~~~~l~-------~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPV 121 (203)
.++|-.||... .. .-|.++.+++- +.....+|+++|.. .+.+++++.++..+-.++.++ ..+.|
T Consensus 94 ~g~SQlPVi~~----~k-~VGsItE~~iv~~~le~~e~i~~~~vr~vM~e--~fP~Vs~~~~l~vI~~LL~~~--~AVlV 164 (187)
T COG3620 94 KGISQLPVIEE----DK-VVGSITENDIVRALLEGMESIRSLRVREVMGE--PFPTVSPDESLNVISQLLEEH--PAVLV 164 (187)
T ss_pred cCCccCceeeC----Ce-eeeeecHHHHHHHHhccccchhhhhHHHHhcC--CCCcCCCCCCHHHHHHHHhhC--CeEEE
Confidence 44555555543 11 26777766551 45677899999988 899999999998888877765 45777
Q ss_pred EeCCCeEEEEEehHHHhhch
Q 028824 122 IDDDWKLVGLVSDYDLLALD 141 (203)
Q Consensus 122 vd~~g~lvGiVt~~Dll~~~ 141 (203)
+ ++|+++||||..|+++..
T Consensus 165 ~-e~G~~vGIITk~DI~k~~ 183 (187)
T COG3620 165 V-ENGKVVGIITKADIMKLL 183 (187)
T ss_pred E-eCCceEEEEeHHHHHHHH
Confidence 7 579999999999999754
No 185
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.41 E-value=0.0006 Score=61.97 Aligned_cols=105 Identities=19% Similarity=0.082 Sum_probs=69.4
Q ss_pred cccccccccCCC-eEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCccCCcc---
Q 028824 83 YTVGDFMTTKEE-LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD--- 158 (203)
Q Consensus 83 ~~V~diM~~~~~-~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v~--- 158 (203)
.++.++|.+... .+...++.+..++++.|.+.+.+.+.|+|++++++|+|+.+++.+.... ...+.+.+.....
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 351 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALTQ--QQGLDAALIDAPLAVD 351 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhhc--CCchhhhhccCCceeC
Confidence 466777754111 1233466789999999999999999999999999999999999865332 1223333322211
Q ss_pred --c----hHHHH----hhhce-eeCCcEEEEEehhhHHHHHH
Q 028824 159 --S----TWKVC----EKCLS-FENYICLGSLSLKFLTFLLI 189 (203)
Q Consensus 159 --~----~~~~~----~~llv-~~~g~lvGiVt~~DI~~~L~ 189 (203)
. ....+ ..++| +++|+++|+|+..+++..+.
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~ 393 (400)
T PRK10070 352 AQTPLSELLSHVGQAPCAVPVVDEDQQYVGIISKGMLLRALD 393 (400)
T ss_pred CCCCHHHHHHHHHhCCCcEEEECCCCcEEEEEEHHHHHHHHH
Confidence 1 11111 12444 45899999999999955553
No 186
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.39 E-value=0.00036 Score=63.39 Aligned_cols=74 Identities=20% Similarity=0.237 Sum_probs=58.5
Q ss_pred cceEecccccC-CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhc
Q 028824 68 SGTLTANSAAP-SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS 144 (203)
Q Consensus 68 ~g~~~~~~l~~-~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~ 144 (203)
.|.+..+++.. ......+.+.+.. +..++.+++++.+++..+.+.... +||+|++|+++|+|+..+++++....
T Consensus 321 ~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 321 VGAVSIDSLKTALTQQQGLDAALID--APLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDRE 395 (400)
T ss_pred EEEEeHHHHHhhhhcCCchhhhhcc--CCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHhc
Confidence 45666666521 1123467788877 788999999999999999997766 99999999999999999999876543
No 187
>PRK11573 hypothetical protein; Provisional
Probab=97.10 E-value=0.0012 Score=60.27 Aligned_cols=82 Identities=20% Similarity=0.086 Sum_probs=62.9
Q ss_pred ccccccCCccccccceEecccccCCC---Cc---cccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeE
Q 028824 55 RVSALRRSSAVFASGTLTANSAAPSS---GV---YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL 128 (203)
Q Consensus 55 ~~~~~r~~~~~~~~g~~~~~~l~~~~---~~---~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~l 128 (203)
++|.-+++.... -|.+..+++.... .. ..+.++|. ++.+++++.++.++++.|.+++.+-..|+|+.|..
T Consensus 222 R~PVy~~~~D~I-iGiv~~kDll~~~~~~~~~~~~~l~~~~r---~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~ 297 (413)
T PRK11573 222 RIVLYRDSLDDA-ISMLRVREAYRLMTEKKEFTKENMLRAAD---EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDI 297 (413)
T ss_pred eEEEEcCCCCce-EEEEEHHHHHHHhhccCcCCHHHHHhhcc---CCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCe
Confidence 344445566667 7888888863211 11 12335554 48899999999999999999999999999999999
Q ss_pred EEEEehHHHhhc
Q 028824 129 VGLVSDYDLLAL 140 (203)
Q Consensus 129 vGiVt~~Dll~~ 140 (203)
.|+||.+||+..
T Consensus 298 ~GiVTleDilEe 309 (413)
T PRK11573 298 QGLVTVEDILEE 309 (413)
T ss_pred EEEeeHHHHHHH
Confidence 999999999964
No 188
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.07 E-value=0.0028 Score=56.95 Aligned_cols=94 Identities=17% Similarity=0.165 Sum_probs=64.7
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCccCCc-----cc----hHHHH
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV-----DS----TWKVC 164 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v-----~~----~~~~~ 164 (203)
......++.+..++++.|...+...+.|+|++++++|+|+.+++..+....+ .+.+.+.... .. ....+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (363)
T TIGR01186 251 GPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARKKAQ--GLQDVLIDDIYTVDAGTLLRETVRKV 328 (363)
T ss_pred cceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhhcCC--chhhhhccCCceECCCCcHHHHHHHH
Confidence 3445667778999999999999999999999999999999999986543221 2333333221 11 11111
Q ss_pred ----hhhce-eeCCcEEEEEehhhHHHHHH
Q 028824 165 ----EKCLS-FENYICLGSLSLKFLTFLLI 189 (203)
Q Consensus 165 ----~~llv-~~~g~lvGiVt~~DI~~~L~ 189 (203)
.-++| +++|+++|+|+..+++..+.
T Consensus 329 ~~~~~~~~v~~~~~~~~g~i~~~~~~~~~~ 358 (363)
T TIGR01186 329 LKAGIKVPVVDEDQRLVGIVTRGSLVDALY 358 (363)
T ss_pred HhCCCCEEEECCCCcEEEEEEHHHHHHHHH
Confidence 11444 45899999999999965554
No 189
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=97.07 E-value=0.0017 Score=58.74 Aligned_cols=50 Identities=34% Similarity=0.502 Sum_probs=46.6
Q ss_pred CCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchh
Q 028824 93 EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142 (203)
Q Consensus 93 ~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~ 142 (203)
+.++++.++.++.++++.|..++++++.|+|++|.++|+||..|++....
T Consensus 310 ~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~ 359 (381)
T KOG1764|consen 310 EGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLV 359 (381)
T ss_pred CccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHH
Confidence 36799999999999999999999999999999999999999999997644
No 190
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=96.73 E-value=0.001 Score=62.88 Aligned_cols=60 Identities=27% Similarity=0.437 Sum_probs=53.4
Q ss_pred CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC-----CeEEEEEehHHHhhc
Q 028824 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-----WKLVGLVSDYDLLAL 140 (203)
Q Consensus 79 ~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~-----g~lvGiVt~~Dll~~ 140 (203)
..++++++|+|++ ++++++.-..+..+.+++..+++.+|||+|+. +++.|+|-...++..
T Consensus 578 ~mr~L~a~ev~~~--pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vl 642 (762)
T KOG0474|consen 578 YMRNLTAGEVMSK--PVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVL 642 (762)
T ss_pred HhhhhhHhhhccC--CeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHH
Confidence 3467799999999 99999999999999999999999999999852 579999999998855
No 191
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=96.38 E-value=0.008 Score=55.00 Aligned_cols=76 Identities=17% Similarity=0.107 Sum_probs=59.5
Q ss_pred CCccccccceEecccccCCCC-c---cccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHH
Q 028824 61 RSSAVFASGTLTANSAAPSSG-V---YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYD 136 (203)
Q Consensus 61 ~~~~~~~~g~~~~~~l~~~~~-~---~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~D 136 (203)
.+.... -|.+..+++..... . ......+. ++..++++.++.++++.|++.+.+-..|+|+-|...|+||.+|
T Consensus 247 ~~~D~i-iGiv~~Kdll~~~~~~~~~~~~~~~~~---~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleD 322 (429)
T COG1253 247 GDLDNI-IGIVHVKDLLRALLDGQSDLDLRVLVR---PPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLED 322 (429)
T ss_pred CCCCcE-EEEEEHHHHHHHHhcCccccchhhccc---CCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHH
Confidence 556666 88888888722221 1 22222333 5899999999999999999999999999999999999999999
Q ss_pred Hhhc
Q 028824 137 LLAL 140 (203)
Q Consensus 137 ll~~ 140 (203)
|+..
T Consensus 323 IiEe 326 (429)
T COG1253 323 IIEE 326 (429)
T ss_pred HHHH
Confidence 9965
No 192
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=96.37 E-value=0.0089 Score=56.71 Aligned_cols=56 Identities=25% Similarity=0.394 Sum_probs=42.6
Q ss_pred cccccccCC---CeEEEcCC-CCHHHHHHHHHHCCCcEEEEEe--CCCeEEEEEehHHHhhc
Q 028824 85 VGDFMTTKE---ELHVVKPT-TTVDEALEILVEKRITGFPVID--DDWKLVGLVSDYDLLAL 140 (203)
Q Consensus 85 V~diM~~~~---~~~~v~~~-~ti~ea~~~m~~~~~~~lPVvd--~~g~lvGiVt~~Dll~~ 140 (203)
..++|.+.+ ...+++.+ .+++|...+|.+..++++||+- +..+++|+|..+|+.-.
T Consensus 545 ~~~v~~p~~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~ 606 (696)
T KOG0475|consen 545 AIPVMEPCRSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLA 606 (696)
T ss_pred hhhhhchhcCchhheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHH
Confidence 344554432 35666666 8999999999999999999983 34689999999998843
No 193
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=96.28 E-value=0.0049 Score=47.13 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=30.2
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD 125 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~ 125 (203)
+++++.+++++.+|++.|.++++..+||+|++
T Consensus 87 ~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~ 118 (133)
T cd04592 87 GLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG 118 (133)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence 78999999999999999999999999999864
No 194
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=95.76 E-value=0.016 Score=52.16 Aligned_cols=84 Identities=20% Similarity=0.243 Sum_probs=63.1
Q ss_pred ccccccCCccccccceEecccc---cCCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEE
Q 028824 55 RVSALRRSSAVFASGTLTANSA---APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGL 131 (203)
Q Consensus 55 ~~~~~r~~~~~~~~g~~~~~~l---~~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGi 131 (203)
++|--|++.... -|.+-.+++ ..+..+.+-.+++.-..++.++++.+++.+-+..|.+++-+.-.|||+-|.+.|+
T Consensus 235 Riplyr~~~DnI-iGvlh~r~llr~l~e~~~~~k~d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GL 313 (423)
T COG4536 235 RIPLYRDDLDNI-IGVLHVRDLLRLLNEKNEFTKEDILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGL 313 (423)
T ss_pred ceeeecCChhHh-hhhhhHHHHHHHhhccCcccHhHHHHHhcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEee
Confidence 455566666665 666555544 1122224555666444469999999999999999999998888999999999999
Q ss_pred EehHHHhh
Q 028824 132 VSDYDLLA 139 (203)
Q Consensus 132 Vt~~Dll~ 139 (203)
||.+||+.
T Consensus 314 VTLEDIlE 321 (423)
T COG4536 314 VTLEDILE 321 (423)
T ss_pred eeHHHHHH
Confidence 99999995
No 195
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=95.60 E-value=0.024 Score=53.96 Aligned_cols=57 Identities=18% Similarity=0.266 Sum_probs=52.2
Q ss_pred ccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhc
Q 028824 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (203)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~ 140 (203)
.+....+|.+ .++++.+++++..+..++++-+.+++.|+++.++.+|++|.+|+.+.
T Consensus 689 yvDl~p~~n~--sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~~ 745 (762)
T KOG0474|consen 689 YVDLHPFMNP--SPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLARY 745 (762)
T ss_pred ccccccccCC--CCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhhhH
Confidence 3456789988 89999999999999999999999999999988899999999999854
No 196
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=95.06 E-value=0.047 Score=49.43 Aligned_cols=55 Identities=15% Similarity=0.251 Sum_probs=45.1
Q ss_pred ccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhch
Q 028824 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (203)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~ 141 (203)
...+.+ +.. +..++++++++.+++..+.+.+.. ++|+|+ |+++|+|+..+++.+.
T Consensus 325 ~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~g~~~~~~~~~~~ 379 (382)
T TIGR03415 325 EQEVES-LEA--APTVINPDTLMRDVLAARHRTGGA-ILLVEN-GRIVGVIGDDNIYHAL 379 (382)
T ss_pred ccchhh-hcc--cCcccCCCCcHHHHHHHHhcCCCC-eEEeeC-CeEEEEEeHHHHHHHH
Confidence 345666 555 688999999999999988887654 888885 9999999999998754
No 197
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=94.78 E-value=0.069 Score=45.50 Aligned_cols=82 Identities=23% Similarity=0.292 Sum_probs=64.3
Q ss_pred ccccccCCccccccceEecccccC----CCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEE
Q 028824 55 RVSALRRSSAVFASGTLTANSAAP----SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVG 130 (203)
Q Consensus 55 ~~~~~r~~~~~~~~g~~~~~~l~~----~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvG 130 (203)
+.|.--.+-... .|++.+++|.. ......+.++..+ .+++++.-.+.-.++-++.++..-..|+|+-|.+-|
T Consensus 102 RfPVi~edkD~v-~GIL~AKDLL~~~~~~~~~F~i~~lLRP---av~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsG 177 (293)
T COG4535 102 RFPVISEDKDHV-EGILLAKDLLPFMRSDAEPFDIKELLRP---AVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSG 177 (293)
T ss_pred cCCcccCCchhh-hhhhhHHHHHHHhcCCcccccHHHhccc---ceecccchhHHHHHHHHHhhcCceEEEEeccCCeee
Confidence 344433344555 78888888722 2233677787765 889999999999999999999999999999999999
Q ss_pred EEehHHHhhc
Q 028824 131 LVSDYDLLAL 140 (203)
Q Consensus 131 iVt~~Dll~~ 140 (203)
+||.+|++..
T Consensus 178 LVTIEDiLEq 187 (293)
T COG4535 178 LVTIEDILEQ 187 (293)
T ss_pred eEEHHHHHHH
Confidence 9999999964
No 198
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=93.68 E-value=0.086 Score=51.28 Aligned_cols=75 Identities=23% Similarity=0.354 Sum_probs=59.7
Q ss_pred ccccccceEeccccc---------CCCCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCC--CeEEEE
Q 028824 63 SAVFASGTLTANSAA---------PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD--WKLVGL 131 (203)
Q Consensus 63 ~~~~~~g~~~~~~l~---------~~~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~--g~lvGi 131 (203)
|..+ ++++-++.+. .....+.|+++|.+ ++.++..++|..|..+.+..+.++.+|+||+. .-|+|.
T Consensus 560 PSiY-DSII~IKklPYLPDlpps~~~~h~v~VE~iMV~--dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGS 636 (931)
T KOG0476|consen 560 PSIY-DSIIRIKKLPYLPDLPPSRSSVHTVKVEHIMVT--DVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGS 636 (931)
T ss_pred cchh-hheeeeccCCcCCCCCCcccceeEEEeeeeccc--cceeeeccCcHHHHHHHHHhCccceeccccCcccceeeeh
Confidence 3444 6666666651 22345789999999 99999999999999998888879999999853 469999
Q ss_pred EehHHHhhc
Q 028824 132 VSDYDLLAL 140 (203)
Q Consensus 132 Vt~~Dll~~ 140 (203)
|..+.|..+
T Consensus 637 V~R~~L~~l 645 (931)
T KOG0476|consen 637 VARRYLTAL 645 (931)
T ss_pred hHHHHHHHH
Confidence 999998855
No 199
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=93.29 E-value=0.2 Score=47.90 Aligned_cols=57 Identities=14% Similarity=0.241 Sum_probs=50.2
Q ss_pred CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhc
Q 028824 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (203)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~ 140 (203)
..+..+++|.. .+.++...++++-+++++++-+.+.+.|. ++|++.|+||.+|+++.
T Consensus 637 ~~~~lk~il~~--tp~tv~d~tp~~~v~~~F~~lg~~~~~v~-~~G~l~Giitkkd~l~~ 693 (696)
T KOG0475|consen 637 SRLDLKDILDM--TPFTVTDLTPMETVVDLFRKLGLRQILVT-KNGILLGIITKKDCLRH 693 (696)
T ss_pred CCcCceeeccC--CcccccccCcHHHHHHHHHhhCceEEEEc-cCCeeEeeeehHHHHHh
Confidence 45667888887 88999999999999999999999999876 47999999999999864
No 200
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.08 E-value=0.21 Score=44.49 Aligned_cols=102 Identities=23% Similarity=0.148 Sum_probs=62.4
Q ss_pred CccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCccCCccch
Q 028824 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST 160 (203)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v~~~ 160 (203)
.-++++++|.+.+....-.+...-..+...+.+.....+.+++.+++.+|+|+..++....... ....-.....
T Consensus 272 ~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~------~~~~v~~d~~ 345 (386)
T COG4175 272 RVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKAALID------DVLTVDADTP 345 (386)
T ss_pred heeeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhcccccc------cccccCccch
Confidence 4567888998521222223334445678888888887888888778899999999987641100 0001011111
Q ss_pred HH----HH-----hhhceeeCCcEEEEEehhhHHHHH
Q 028824 161 WK----VC-----EKCLSFENYICLGSLSLKFLTFLL 188 (203)
Q Consensus 161 ~~----~~-----~~llv~~~g~lvGiVt~~DI~~~L 188 (203)
.. .. ...+++++++++|+++...++..|
T Consensus 346 ~~~~~~~~~~~~~p~aVvde~~r~vG~i~~~~vl~aL 382 (386)
T COG4175 346 LSEILARIRQAPCPVAVVDEDGRYVGIISRGELLEAL 382 (386)
T ss_pred HHHHHHHHhcCCCceeEEcCCCcEEEEecHHHHHHHH
Confidence 11 11 224567899999999999994443
No 201
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=91.95 E-value=0.35 Score=43.14 Aligned_cols=52 Identities=23% Similarity=0.342 Sum_probs=43.0
Q ss_pred ccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchh
Q 028824 88 FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142 (203)
Q Consensus 88 iM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~ 142 (203)
.+.. ++.++..++++.+.+..+.+.. ..++|+|++|+++|+|+...++.++.
T Consensus 332 ~~~~--~~~~v~~d~~~~~~~~~~~~~~-~p~aVvde~~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 332 ALID--DVLTVDADTPLSEILARIRQAP-CPVAVVDEDGRYVGIISRGELLEALA 383 (386)
T ss_pred cccc--cccccCccchHHHHHHHHhcCC-CceeEEcCCCcEEEEecHHHHHHHHh
Confidence 4444 6888999999999998888764 46889999999999999999997653
No 202
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=91.36 E-value=0.4 Score=41.58 Aligned_cols=59 Identities=24% Similarity=0.315 Sum_probs=41.5
Q ss_pred CccccccccccCC--CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhh
Q 028824 81 GVYTVGDFMTTKE--ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (203)
Q Consensus 81 ~~~~V~diM~~~~--~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~ 139 (203)
...++.+.|.... +--.+.......+++..+...+.+.+||+|++|+++|.||..+++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~ 307 (309)
T COG1125 247 SLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLD 307 (309)
T ss_pred chhhHHHhhcccccccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhh
Confidence 4445555555411 1112233445566888888899999999999999999999999874
No 203
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=89.44 E-value=0.5 Score=42.81 Aligned_cols=96 Identities=16% Similarity=0.088 Sum_probs=52.9
Q ss_pred CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhhcCCCccccCccCCc--
Q 028824 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV-- 157 (203)
Q Consensus 80 ~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~~~v~~~m~~~v-- 157 (203)
..-++++++|.+ ...+...... .+++. ++.+.+.|+|+ |+++..+...+..........+ +..+.
T Consensus 271 ~~~l~a~~~m~~---~~~~~~~~~~-~~~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 337 (382)
T TIGR03415 271 LNVLTARSLMRP---LTDLEHVDGG-WCVSD---RRDTWLFTIDK-----QVRRRDAKLPVQAWAAEQEVES-LEAAPTV 337 (382)
T ss_pred ccceeHHHHhcc---cccccccCcc-hhhhh---cccceeEeecc-----ceecccchHhHhhcccccchhh-hcccCcc
Confidence 455688899954 3333222222 34433 77888999985 8888777654322111112222 11111
Q ss_pred ---cchHHHH--------hhhceeeCCcEEEEEehhhHHHHH
Q 028824 158 ---DSTWKVC--------EKCLSFENYICLGSLSLKFLTFLL 188 (203)
Q Consensus 158 ---~~~~~~~--------~~llv~~~g~lvGiVt~~DI~~~L 188 (203)
.....++ .-+.+.++|+++|+|++.+++..|
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~ 379 (382)
T TIGR03415 338 INPDTLMRDVLAARHRTGGAILLVENGRIVGVIGDDNIYHAL 379 (382)
T ss_pred cCCCCcHHHHHHHHhcCCCCeEEeeCCeEEEEEeHHHHHHHH
Confidence 1112211 224556679999999999995544
No 204
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=85.18 E-value=1 Score=28.38 Aligned_cols=22 Identities=23% Similarity=0.013 Sum_probs=17.3
Q ss_pred hcee-eCCcEEEEEehhhHHHHH
Q 028824 167 CLSF-ENYICLGSLSLKFLTFLL 188 (203)
Q Consensus 167 llv~-~~g~lvGiVt~~DI~~~L 188 (203)
+++. ++|+++|+|+.+|+++.+
T Consensus 33 ~~V~d~~~~~~G~is~~dl~~~l 55 (57)
T PF00571_consen 33 LPVVDEDGKLVGIISRSDLLKAL 55 (57)
T ss_dssp EEEESTTSBEEEEEEHHHHHHHH
T ss_pred EEEEecCCEEEEEEEHHHHHhhh
Confidence 4444 789999999999995543
No 205
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=58.74 E-value=15 Score=25.55 Aligned_cols=30 Identities=27% Similarity=0.358 Sum_probs=21.6
Q ss_pred CcEEEEEeCCCeEEEEEehHHHhhchhhcC
Q 028824 116 ITGFPVIDDDWKLVGLVSDYDLLALDSISG 145 (203)
Q Consensus 116 ~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~ 145 (203)
...+-|+|++|+.+|+++..+-++.....+
T Consensus 12 ~~~VrlI~~~g~~lGv~~~~eAl~~A~~~~ 41 (76)
T PF05198_consen 12 APEVRLIDEDGEQLGVMSLREALRLAKEKG 41 (76)
T ss_dssp -SEEEEE-TTS-EEEEEEHHHHHHHHHHTT
T ss_pred CCEEEEECCCCcEeceEEHHHHHHHHHHcC
Confidence 456778899999999999999987654433
No 206
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=58.30 E-value=13 Score=36.71 Aligned_cols=49 Identities=14% Similarity=0.008 Sum_probs=43.0
Q ss_pred CeEEEcCCCCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhchhh
Q 028824 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143 (203)
Q Consensus 94 ~~~~v~~~~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~~~~ 143 (203)
.+..+-+.+++.++=.++.--+.++..|++ -|+++|+|..++|.++.+.
T Consensus 811 aPfQLve~TSL~K~HtLFSLLgL~~AYVT~-~GrLvGVValkELRkAie~ 859 (931)
T KOG0476|consen 811 APFQLVEGTSLYKVHTLFSLLGLNHAYVTS-CGRLVGVVALKELRKAIEN 859 (931)
T ss_pred CceeeeccchHHHHHHHHHHhccchhhhcc-cCcEEEEEEHHHHHHHHHh
Confidence 456778889999999999988999999997 6999999999999988654
No 207
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=52.51 E-value=16 Score=26.88 Aligned_cols=19 Identities=42% Similarity=0.431 Sum_probs=14.0
Q ss_pred cEEEEEeCCCeEEEEEehH
Q 028824 117 TGFPVIDDDWKLVGLVSDY 135 (203)
Q Consensus 117 ~~lPVvd~~g~lvGiVt~~ 135 (203)
-..||.|.+|+++|+|...
T Consensus 92 ~~~PV~d~~g~viG~V~VG 110 (116)
T PF14827_consen 92 AFAPVYDSDGKVIGVVSVG 110 (116)
T ss_dssp EEEEEE-TTS-EEEEEEEE
T ss_pred EEEeeECCCCcEEEEEEEE
Confidence 3579998899999999753
No 208
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=45.06 E-value=37 Score=32.53 Aligned_cols=38 Identities=16% Similarity=0.266 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHHhhc
Q 028824 102 TTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (203)
Q Consensus 102 ~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~ 140 (203)
..++.+.+...+.+-.-++|+. +|+++|+|..+|+.+-
T Consensus 413 ~~l~~~~~~vs~~GGTPL~V~~-~~~~~GVI~LkDivK~ 450 (681)
T COG2216 413 EDLDAAVDEVSRLGGTPLVVVE-NGRILGVIYLKDIVKP 450 (681)
T ss_pred HHHHHHHHHHHhcCCCceEEEE-CCEEEEEEEehhhcch
Confidence 3467777788888888898887 6999999999999853
No 209
>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A ....
Probab=44.88 E-value=19 Score=25.48 Aligned_cols=19 Identities=37% Similarity=0.616 Sum_probs=16.6
Q ss_pred HCCCcEEEEEeCCCeEEEE
Q 028824 113 EKRITGFPVIDDDWKLVGL 131 (203)
Q Consensus 113 ~~~~~~lPVvd~~g~lvGi 131 (203)
..+.++=||+|.+|+++||
T Consensus 102 ~~G~SGgpv~~~~G~vvGi 120 (120)
T PF13365_consen 102 RPGSSGGPVFDSDGRVVGI 120 (120)
T ss_dssp STTTTTSEEEETTSEEEEE
T ss_pred CCCcEeHhEECCCCEEEeC
Confidence 3578889999999999997
No 210
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=43.39 E-value=11 Score=35.49 Aligned_cols=48 Identities=23% Similarity=0.378 Sum_probs=39.4
Q ss_pred CCCCccccccccccCCCeEEEcCCCCHH-HHHHHHHHCCCcEEEEEeCC
Q 028824 78 PSSGVYTVGDFMTTKEELHVVKPTTTVD-EALEILVEKRITGFPVIDDD 125 (203)
Q Consensus 78 ~~~~~~~V~diM~~~~~~~~v~~~~ti~-ea~~~m~~~~~~~lPVvd~~ 125 (203)
-.+.++.++++|++.+++..+..+..+. +......+++++++||.+.+
T Consensus 199 l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~ 247 (498)
T KOG2118|consen 199 LELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQE 247 (498)
T ss_pred HHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCc
Confidence 4567788999999988888888888776 66667779999999999854
No 211
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=41.77 E-value=37 Score=22.87 Aligned_cols=17 Identities=41% Similarity=0.747 Sum_probs=13.9
Q ss_pred EEEEEeCCCeEEEEEeh
Q 028824 118 GFPVIDDDWKLVGLVSD 134 (203)
Q Consensus 118 ~lPVvd~~g~lvGiVt~ 134 (203)
..||.+++|+++|++..
T Consensus 18 s~pi~~~~g~~~Gvv~~ 34 (81)
T PF02743_consen 18 SVPIYDDDGKIIGVVGI 34 (81)
T ss_dssp EEEEEETTTEEEEEEEE
T ss_pred EEEEECCCCCEEEEEEE
Confidence 56899988999998754
No 212
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=33.57 E-value=25 Score=25.50 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=38.3
Q ss_pred CCccccccccccCCCeEEEcCCCCHHHHHHHHHHC---CCcEEEEEeC-CCeE----EEEEehHHHhhc
Q 028824 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEK---RITGFPVIDD-DWKL----VGLVSDYDLLAL 140 (203)
Q Consensus 80 ~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~---~~~~lPVvd~-~g~l----vGiVt~~Dll~~ 140 (203)
+.+-.|.+.+.. +++.+..+.+-.++.++.... +...+.++|. +|++ .|.++.++++..
T Consensus 40 l~~~~v~~~l~~--~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~ 106 (114)
T cd02958 40 WSNESVKEFIRE--NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQ 106 (114)
T ss_pred cCCHHHHHHHHh--CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHH
Confidence 345567888876 777777665434555555544 4555666787 6765 488888887754
No 213
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=33.01 E-value=99 Score=21.54 Aligned_cols=27 Identities=19% Similarity=0.134 Sum_probs=18.9
Q ss_pred HHHHHCCCcEEEEEeCCCeEEEEEehH
Q 028824 109 EILVEKRITGFPVIDDDWKLVGLVSDY 135 (203)
Q Consensus 109 ~~m~~~~~~~lPVvd~~g~lvGiVt~~ 135 (203)
+.+.+.+...+.|.+++|+++|++..+
T Consensus 36 ~~~~~~~~~~~~v~~~~~~ivG~~~~~ 62 (117)
T PF13673_consen 36 EEYLEEGSHTIFVAEEGGEIVGFAWLE 62 (117)
T ss_dssp HHHHCTCCCEEEEEEETTEEEEEEEEE
T ss_pred HHHHHhcCCEEEEEEECCEEEEEEEEc
Confidence 344444446677777789999999864
No 214
>PRK00028 infC translation initiation factor IF-3; Reviewed
Probab=30.01 E-value=43 Score=27.12 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=13.7
Q ss_pred CCHHHHHHHHHHCCCcEEEEE
Q 028824 102 TTVDEALEILVEKRITGFPVI 122 (203)
Q Consensus 102 ~ti~ea~~~m~~~~~~~lPVv 122 (203)
.+..||+++..+.+.+-+-|-
T Consensus 35 ~~~~eAl~~A~~~~lDLV~v~ 55 (177)
T PRK00028 35 VSTREALELAEEAGLDLVEIS 55 (177)
T ss_pred eeHHHHHHHHHHcCCCEEEEC
Confidence 466777777777777655543
No 215
>CHL00199 infC translation initiation factor 3; Provisional
Probab=27.25 E-value=52 Score=26.90 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=12.8
Q ss_pred cEEEEEeCCCeEEEEEehHHHhhc
Q 028824 117 TGFPVIDDDWKLVGLVSDYDLLAL 140 (203)
Q Consensus 117 ~~lPVvd~~g~lvGiVt~~Dll~~ 140 (203)
..+=|+|++|+.+|+++..+-++.
T Consensus 25 ~~VrlI~~~G~~lGv~~~~eAl~~ 48 (182)
T CHL00199 25 PKVRVIDDSGEQLGIFTSEQAIQL 48 (182)
T ss_pred CEEEEECCCCcCCCceeHHHHHHH
Confidence 344455555555555555555543
No 216
>TIGR00168 infC translation initiation factor IF-3. render its expression particularly sensitive to excess of its gene product IF-3 thereby regulating its own expression
Probab=27.22 E-value=45 Score=26.69 Aligned_cols=18 Identities=33% Similarity=0.281 Sum_probs=10.2
Q ss_pred CHHHHHHHHHHCCCcEEE
Q 028824 103 TVDEALEILVEKRITGFP 120 (203)
Q Consensus 103 ti~ea~~~m~~~~~~~lP 120 (203)
+..+|+++..+.+.+-+-
T Consensus 24 ~~~eAl~~A~~~~lDLVe 41 (165)
T TIGR00168 24 SREEALEIAEEAGLDLVL 41 (165)
T ss_pred cHHHHHHHHHHcCCcEEE
Confidence 456666666666655443
No 217
>PF13596 PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D.
Probab=27.13 E-value=57 Score=22.92 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=12.3
Q ss_pred CcEEEEEeCCCeEEEEE
Q 028824 116 ITGFPVIDDDWKLVGLV 132 (203)
Q Consensus 116 ~~~lPVvd~~g~lvGiV 132 (203)
....|+.|++|++.|++
T Consensus 83 ~~~~P~~~~~g~~~G~v 99 (106)
T PF13596_consen 83 VRYRPYRDEDGEYAGAV 99 (106)
T ss_dssp EEEEEEE-TTS-EEEEE
T ss_pred EEEEEEECCCCCEEEEE
Confidence 45778998889999986
No 218
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=27.00 E-value=83 Score=25.56 Aligned_cols=32 Identities=28% Similarity=0.347 Sum_probs=25.1
Q ss_pred CCcEEEEEeCCCeEEEEEehHHHhhchhhcCC
Q 028824 115 RITGFPVIDDDWKLVGLVSDYDLLALDSISGS 146 (203)
Q Consensus 115 ~~~~lPVvd~~g~lvGiVt~~Dll~~~~~~~~ 146 (203)
++..+-++|++|+-+|+++..|-+......+.
T Consensus 17 r~~evrlIg~~GeqlGiv~~~eAL~lA~e~~L 48 (176)
T COG0290 17 RAREVRLIGEDGEQLGIVSIEEALKLAEEAGL 48 (176)
T ss_pred cccEEEEECCCCcEEcceeHHHHHHHHHHcCC
Confidence 45677788999999999999999976554433
No 219
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=24.55 E-value=96 Score=27.49 Aligned_cols=34 Identities=44% Similarity=0.648 Sum_probs=22.4
Q ss_pred HHHHHHHHHCCC-------cEEEEEeCCCeEEEE--EehHHHh
Q 028824 105 DEALEILVEKRI-------TGFPVIDDDWKLVGL--VSDYDLL 138 (203)
Q Consensus 105 ~ea~~~m~~~~~-------~~lPVvd~~g~lvGi--Vt~~Dll 138 (203)
.++++.+.+.+. .++||++++|.+.|+ |-.+|..
T Consensus 175 ~~aI~~LLe~G~IvI~~GgGGiPV~~~~g~~~gveaViD~D~a 217 (313)
T PRK12454 175 IEVIKALVENGFIVIASGGGGIPVIEEDGELKGVEAVIDKDLA 217 (313)
T ss_pred HHHHHHHHHCCCEEEEeCCCccceEcCCCcEEeeeeecCccHH
Confidence 456666666654 457888888888885 3355555
No 220
>PF00944 Peptidase_S3: Alphavirus core protein ; InterPro: IPR000930 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. Togavirin, also known as Sindbis virus core endopeptidase, is a serine protease resident at the N terminus of the p130 polyprotein of togaviruses []. The endopeptidase signature identifies the peptidase as belonging to the MEROPS peptidase family S3 (togavirin family, clan PA(S)). The polyprotein also includes structural proteins for the nucleocapsid core and for the glycoprotein spikes []. Togavirin is only active while part of the polyprotein, cleavage at a Trp-Ser bond resulting in total lack of activity []. Mutagenesis studies have identified the location of the His-Asp-Ser catalytic triad, and X-ray studies have revealed the protein fold to be similar to that of chymotrypsin [, ].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 2YEW_D 1EP5_A 3J0C_F 1EP6_C 1WYK_D 1DYL_A 1VCQ_B 1VCP_B 1LD4_D 1KXA_A ....
Probab=23.91 E-value=68 Score=25.21 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=17.1
Q ss_pred CCCcEEEEEeCCCeEEEEEeh
Q 028824 114 KRITGFPVIDDDWKLVGLVSD 134 (203)
Q Consensus 114 ~~~~~lPVvd~~g~lvGiVt~ 134 (203)
.+=++-|+.|+.|++||||--
T Consensus 105 ~GDSGRpi~DNsGrVVaIVLG 125 (158)
T PF00944_consen 105 PGDSGRPIFDNSGRVVAIVLG 125 (158)
T ss_dssp TTSTTEEEESTTSBEEEEEEE
T ss_pred CCCCCCccCcCCCCEEEEEec
Confidence 345678999999999999954
No 221
>PHA00673 acetyltransferase domain containing protein
Probab=23.74 E-value=1.8e+02 Score=22.98 Aligned_cols=36 Identities=14% Similarity=0.030 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHCCCcEEEEEeCCCeEEEEEehHHH
Q 028824 102 TTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137 (203)
Q Consensus 102 ~ti~ea~~~m~~~~~~~lPVvd~~g~lvGiVt~~Dl 137 (203)
.+-.++.+.+.+..-..+.|..++|++||.+....+
T Consensus 40 ~~y~~af~ai~~dp~~~llVa~~~g~vVG~~~l~~~ 75 (154)
T PHA00673 40 APDHHAYAGMEAAGVAHFLGVFRGEELVGFACLLVT 75 (154)
T ss_pred chhHHHHHHHHhCCCcEEEEEEECCEEEEEEEEEEe
Confidence 445667788888888888888778999997766543
No 222
>PRK10638 glutaredoxin 3; Provisional
Probab=22.63 E-value=1.8e+02 Score=19.56 Aligned_cols=29 Identities=31% Similarity=0.258 Sum_probs=19.1
Q ss_pred HHHHCCCcEEEEEeCCCeEEEEEehHHHhhc
Q 028824 110 ILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (203)
Q Consensus 110 ~m~~~~~~~lPVvd~~g~lvGiVt~~Dll~~ 140 (203)
+...++...+|++--+|+.+|=. .|+.++
T Consensus 44 l~~~~g~~~vP~i~~~g~~igG~--~~~~~~ 72 (83)
T PRK10638 44 MIKRSGRTTVPQIFIDAQHIGGC--DDLYAL 72 (83)
T ss_pred HHHHhCCCCcCEEEECCEEEeCH--HHHHHH
Confidence 34456788899996567777643 555543
No 223
>smart00594 UAS UAS domain.
Probab=22.09 E-value=54 Score=24.25 Aligned_cols=57 Identities=11% Similarity=0.091 Sum_probs=35.8
Q ss_pred CCccccccccccCCCeEEEcCCCCHHHHHHHHHHCCC---cEEEEEeCCC---------eEEEEEehHHHh
Q 028824 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRI---TGFPVIDDDW---------KLVGLVSDYDLL 138 (203)
Q Consensus 80 ~~~~~V~diM~~~~~~~~v~~~~ti~ea~~~m~~~~~---~~lPVvd~~g---------~lvGiVt~~Dll 138 (203)
+..-.|.+++.+ +++.+..+.+-.+..+++...++ ..+.+++.++ ++-|.++.++++
T Consensus 50 l~~~~V~~~i~~--~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~ 118 (122)
T smart00594 50 LCNEAVKSLIRE--NFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELM 118 (122)
T ss_pred ccCHHHHHHHHc--CEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHH
Confidence 455567778876 78876666665667666666654 4556667665 344555555554
No 224
>PF08275 Toprim_N: DNA primase catalytic core, N-terminal domain; InterPro: IPR013264 This is the N-terminal, catalytic core domain of DNA primases. DNA primase (2.7.7 from EC) is a nucleotidyltransferase which synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork. It can also prime the leading strand and has been implicated in cell division []. ; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A 2AU3_A.
Probab=20.89 E-value=82 Score=23.79 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=13.3
Q ss_pred EEEEEeCCCeEEEEEehH
Q 028824 118 GFPVIDDDWKLVGLVSDY 135 (203)
Q Consensus 118 ~lPVvd~~g~lvGiVt~~ 135 (203)
.+||.|..|++||+--..
T Consensus 80 ifPI~d~~G~vvgF~gR~ 97 (128)
T PF08275_consen 80 IFPIRDERGRVVGFGGRR 97 (128)
T ss_dssp EEEEE-TTS-EEEEEEEE
T ss_pred EEEEEcCCCCEEEEeccc
Confidence 589999999999997653
Done!