BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028826
(203 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FLB0|RH18_ARATH DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis thaliana
GN=RH18 PE=2 SV=1
Length = 593
Score = 306 bits (785), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 150/193 (77%), Positives = 173/193 (89%), Gaps = 4/193 (2%)
Query: 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPG 60
MG+IISPTRELS QIY+VAQPF+STL +V S+LLVGG EVKAD+K IEEEG N+LIGTPG
Sbjct: 92 MGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEGCNVLIGTPG 151
Query: 61 RLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120
RL DIMERM++LDFRNL IL+LDEADRLL+MGFQ+Q++YIISRLPK RRTGLFSATQTE
Sbjct: 152 RLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQRRTGLFSATQTEG 211
Query: 121 VEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPSQLVD 180
VEEL+KAGLRNPVR+EVRA+SKS SSQQL +SKTP GLHLEY+ECE+DKK SQLVD
Sbjct: 212 VEELAKAGLRNPVRVEVRAKSKSE----SSQQLTNSKTPSGLHLEYMECEADKKSSQLVD 267
Query: 181 LLIKNKSKKIIMY 193
LLIKN KK+I++
Sbjct: 268 LLIKNSDKKLIVF 280
>sp|Q761Z9|RH18_ORYSJ DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa subsp.
japonica GN=Os01g0164500 PE=1 SV=2
Length = 647
Score = 281 bits (720), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 131/193 (67%), Positives = 166/193 (86%)
Query: 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPG 60
+G+IISPTRELS+QIY+VAQPF +TL V SMLLVGG ++KA++KK+EEEGAN+L+GTPG
Sbjct: 98 LGIIISPTRELSSQIYNVAQPFFATLKGVSSMLLVGGFDIKAELKKLEEEGANILVGTPG 157
Query: 61 RLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120
+L+D+MER+D L+++NL IL+LDEADRLLD+GFQKQI+ IIS+LPKLRRTGLFSATQTEA
Sbjct: 158 KLFDVMERLDTLNYKNLEILILDEADRLLDLGFQKQITSIISKLPKLRRTGLFSATQTEA 217
Query: 121 VEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPSQLVD 180
V+EL+KAGLRNPVR+EV+ E K + Q+L SKTPLGL LEY+ CE+ K SQLVD
Sbjct: 218 VKELAKAGLRNPVRVEVKTEVKPTGKDGAQQELGPSKTPLGLRLEYMICEASNKSSQLVD 277
Query: 181 LLIKNKSKKIIMY 193
L++N KKI++Y
Sbjct: 278 FLVQNNGKKIMVY 290
>sp|Q8GXD6|RH49_ARATH DEAD-box ATP-dependent RNA helicase 49 OS=Arabidopsis thaliana
GN=RH49 PE=2 SV=2
Length = 558
Score = 260 bits (665), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 130/193 (67%), Positives = 160/193 (82%), Gaps = 13/193 (6%)
Query: 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPG 60
MG+IISPTRELSAQI+ VA+PF+STLP+V S+LLVGG EV+AD+ +EEEGANLLIGTPG
Sbjct: 92 MGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEGANLLIGTPG 151
Query: 61 RLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120
RL D+M+RM+ LDFRNL IL+LDEADRLLDMGFQKQ++YIISRLPK RRTGLFSATQT+A
Sbjct: 152 RLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQA 211
Query: 121 VEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPSQLVD 180
V +L+KAGLRN + + AESK SKT GL+ EYL+CE+D+K SQLV
Sbjct: 212 VADLAKAGLRNAMEVISGAESK-------------SKTSSGLYCEYLKCEADQKSSQLVH 258
Query: 181 LLIKNKSKKIIMY 193
LLI+NK+KK++++
Sbjct: 259 LLIENKNKKLVVF 271
>sp|Q9FVV4|RH55_ARATH DEAD-box ATP-dependent RNA helicase 55 OS=Arabidopsis thaliana
GN=RH55 PE=2 SV=1
Length = 465
Score = 202 bits (514), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 108/193 (55%), Positives = 133/193 (68%), Gaps = 41/193 (21%)
Query: 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPG 60
MG+IISPTRELSAQI+ VA+ + EV+AD+ +EEEGANLLIGTPG
Sbjct: 93 MGVIISPTRELSAQIHKVARAVRLDFAKCR--------EVEADMNTLEEEGANLLIGTPG 144
Query: 61 RLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120
RL D+M+RM+ LDFRNL IL+LDEADRLLDMGFQKQ++YIISRLPK RRTGLFSATQT+A
Sbjct: 145 RLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQA 204
Query: 121 VEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPSQLVD 180
V +L+KAGLRNP YL+CE+D+K SQLV
Sbjct: 205 VADLAKAGLRNP---------------------------------YLKCEADQKSSQLVH 231
Query: 181 LLIKNKSKKIIMY 193
LLI+NK+KK++++
Sbjct: 232 LLIENKNKKLVVF 244
>sp|Q6AZV7|DDX55_XENLA ATP-dependent RNA helicase DDX55 OS=Xenopus laevis GN=ddx55 PE=2
SV=1
Length = 594
Score = 164 bits (416), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 91/197 (46%), Positives = 125/197 (63%), Gaps = 13/197 (6%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+II+PTREL+ QI V F P +LL+GG DV+K +E G N+++ TPGR
Sbjct: 85 ALIITPTRELAVQIDEVLSCFTKHFPQFSQILLIGGSNPVDDVRKFKEHGGNIIVATPGR 144
Query: 62 LYDIMERM-DVLDF----RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116
L D+ R D LD + L +L+LDEADRLLDMGF+ I+ I+ LPK RRTGLFSAT
Sbjct: 145 LEDMFRRQADGLDLVICVKTLDVLILDEADRLLDMGFEASINTILGFLPKQRRTGLFSAT 204
Query: 117 QTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPS 176
QT+ +E L +AGLRNPVRI V K +A+S Q KTP+ L Y+ C++D+K +
Sbjct: 205 QTQELENLVRAGLRNPVRIAV----KEKGVAATSTQ----KTPIRLQNYYMICKADEKFN 256
Query: 177 QLVDLLIKNKSKKIIMY 193
+L+ L K K +K +++
Sbjct: 257 KLIAFLQKRKQEKHLVF 273
>sp|Q5ZLN8|DDX55_CHICK ATP-dependent RNA helicase DDX55 OS=Gallus gallus GN=DDX55 PE=2
SV=1
Length = 591
Score = 163 bits (413), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 92/197 (46%), Positives = 127/197 (64%), Gaps = 13/197 (6%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+II+PTREL+ QI V F P +LL+GG DV+K +E G N+++ TPGR
Sbjct: 85 AIIITPTRELAIQIDEVLTHFTKHFPKFSQILLIGGRNPMEDVEKFKEHGGNIIVATPGR 144
Query: 62 LYDIMER-MDVLDF----RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116
L D+ R D LD ++L +LVLDEADRLLDMGF+ ++ I++ LPK RRTGLFSAT
Sbjct: 145 LEDLFRRKADGLDLASCVKSLDVLVLDEADRLLDMGFESSLNAILAFLPKQRRTGLFSAT 204
Query: 117 QTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPS 176
QT+ VE L +AGLRNPVRI V K +A++ Q KTP L Y+ C++D+K +
Sbjct: 205 QTQEVENLVRAGLRNPVRISV----KEKGVAATNTQ----KTPTRLENYYMICKADEKFN 256
Query: 177 QLVDLLIKNKSKKIIMY 193
QLV L ++K +K +++
Sbjct: 257 QLVHFLRQHKQEKHLVF 273
>sp|Q2NL08|DDX55_BOVIN ATP-dependent RNA helicase DDX55 OS=Bos taurus GN=DDX55 PE=2 SV=1
Length = 601
Score = 162 bits (410), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/197 (47%), Positives = 123/197 (62%), Gaps = 13/197 (6%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+II+PTREL+ QI V F P +L +GG DV + +E G N+++ TPGR
Sbjct: 85 AIIITPTRELAVQIEEVLSHFTKPFPQFSQILWIGGRNPGEDVARFKELGGNIIVATPGR 144
Query: 62 LYDIMER-MDVLDF----RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116
L D+ R + LD R+L +LVLDEADRLLDMGF+ I+ I+ LPK RRTGLFSAT
Sbjct: 145 LEDMFRRKAEGLDLASCVRSLEVLVLDEADRLLDMGFETSINTILEFLPKQRRTGLFSAT 204
Query: 117 QTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPS 176
QT+ VE L +AGLRNPVRI V K +ASS Q KTP L Y+ C++D+K +
Sbjct: 205 QTQEVENLVRAGLRNPVRISV----KEKGVAASSTQ----KTPSRLENHYMVCKADEKFN 256
Query: 177 QLVDLLIKNKSKKIIMY 193
QLV L +K +K +++
Sbjct: 257 QLVHFLRNHKQEKHLVF 273
>sp|Q8NHQ9|DDX55_HUMAN ATP-dependent RNA helicase DDX55 OS=Homo sapiens GN=DDX55 PE=1 SV=3
Length = 600
Score = 161 bits (408), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/197 (46%), Positives = 126/197 (63%), Gaps = 13/197 (6%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+II+PTREL+ QI V F P+ +L +GG DV++ +++G N+++ TPGR
Sbjct: 85 AIIITPTRELAIQIDEVLSHFTKHFPEFSQILWIGGRNPGEDVERFKQQGGNIIVATPGR 144
Query: 62 LYDIMER-MDVLDF----RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116
L D+ R + LD R+L +LVLDEADRLLDMGF+ I+ I+ LPK RRTGLFSAT
Sbjct: 145 LEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINTILEFLPKQRRTGLFSAT 204
Query: 117 QTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPS 176
QT+ VE L +AGLRNPVR+ V K +ASS Q KTP L Y+ C++D+K +
Sbjct: 205 QTQEVENLVRAGLRNPVRVSV----KEKGVAASSAQ----KTPSRLENYYMVCKADEKFN 256
Query: 177 QLVDLLIKNKSKKIIMY 193
QLV L +K +K +++
Sbjct: 257 QLVHFLRNHKQEKHLVF 273
>sp|Q8JHJ2|DDX55_DANRE ATP-dependent RNA helicase DDX55 OS=Danio rerio GN=ddx55 PE=2 SV=2
Length = 593
Score = 160 bits (404), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 92/197 (46%), Positives = 127/197 (64%), Gaps = 13/197 (6%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+II+PTREL+ QI V F+ P +LL+GG DV+K++ +GAN++I TPGR
Sbjct: 85 ALIITPTRELAMQISEVMGRFLQGFPQFTQILLIGGSNPIEDVEKLKTQGANIIIATPGR 144
Query: 62 LYDIMER-MDVLDF----RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116
L D+ R D LD ++L +LVLDEADRLLDMGF+ ++ I+ LPK RRTGLFSAT
Sbjct: 145 LEDMFRRKADGLDLATAVKSLDVLVLDEADRLLDMGFEASLNTILGYLPKQRRTGLFSAT 204
Query: 117 QTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPS 176
QT+ +E+L +AGLRNPVRI V K +ASS Q KTP L Y C +++K +
Sbjct: 205 QTQELEKLVRAGLRNPVRITV----KEKGVAASSVQ----KTPAKLSNYYTMCRAEEKFN 256
Query: 177 QLVDLLIKNKSKKIIMY 193
LV L ++K +K +++
Sbjct: 257 TLVAFLRQHKHEKQLVF 273
>sp|Q6ZPL9|DDX55_MOUSE ATP-dependent RNA helicase DDX55 OS=Mus musculus GN=Ddx55 PE=2 SV=2
Length = 600
Score = 157 bits (397), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 89/197 (45%), Positives = 123/197 (62%), Gaps = 13/197 (6%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
++I+PTREL+ QI V F P +L +GG DV++ ++ G N+++ TPGR
Sbjct: 85 AIVITPTRELAIQIDEVLSHFTKHFPQFSQILWIGGRNPGEDVERFKQHGGNIIVATPGR 144
Query: 62 LYDIMER-MDVLDF----RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116
L D+ R + LD ++L +LVLDEADRLLDMGF+ I+ I+ LPK RRTGLFSAT
Sbjct: 145 LEDMFRRKAEGLDLASCVKSLDVLVLDEADRLLDMGFEASINTILEFLPKQRRTGLFSAT 204
Query: 117 QTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPS 176
QT+ VE L +AGLRNPVRI V K +ASS Q KTP L Y+ C++D+K +
Sbjct: 205 QTQEVENLVRAGLRNPVRISV----KEKGVAASSTQ----KTPSRLENHYMICKADEKFN 256
Query: 177 QLVDLLIKNKSKKIIMY 193
QLV L + +K +++
Sbjct: 257 QLVHFLRSRQQEKHLVF 273
>sp|A3LX02|SPB4_PICST ATP-dependent rRNA helicase SPB4 OS=Scheffersomyces stipitis
(strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL
Y-11545) GN=SPB4 PE=3 SV=2
Length = 617
Score = 131 bits (330), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 120/198 (60%), Gaps = 17/198 (8%)
Query: 1 MGMIISPTRELSAQIYHVAQPFISTLPD----VKSMLLVGGVE-VKADVKKIEEEGANLL 55
+ +++SPTREL++QI V I LP+ +K+ LLVG + V+ D+ + ++ ++L
Sbjct: 95 LAIVLSPTRELASQIQSVFNNVIEYLPEDKIPIKTQLLVGSLSTVRDDLDRFLKDKPHIL 154
Query: 56 IGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115
I TPGR+ D M V ++ I +LDEAD+LLD F+K + I+ RLPK RRTGLFSA
Sbjct: 155 IATPGRMLDFMSSQYV-KMNSVEIAILDEADKLLDFSFEKDVVNILKRLPKQRRTGLFSA 213
Query: 116 TQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKP 175
T + A + +AG+ NPV++ V+++S + +++ P LH+ YL E +KK
Sbjct: 214 TISAAGNTIFRAGMNNPVKVAVKSKSTTANSA-----------PSALHISYLMIEPEKKI 262
Query: 176 SQLVDLLIKNKSKKIIMY 193
+ L+ LL + KK I+Y
Sbjct: 263 TTLIKLLHDYRYKKCIVY 280
>sp|Q4P9E5|SPB4_USTMA ATP-dependent rRNA helicase SPB4 OS=Ustilago maydis (strain 521 /
FGSC 9021) GN=SPB4 PE=3 SV=2
Length = 767
Score = 124 bits (310), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 124/245 (50%), Gaps = 59/245 (24%)
Query: 2 GMIISPTRELSAQIYHVAQPFIS-------------------------------TLPDVK 30
+I+SPTREL+ QIY V F+ T PD
Sbjct: 104 ALIVSPTRELAEQIYKVLVMFLDAQNHAHVQAQQQQDQDEQDEQDEQEAQSDSDTDPDAS 163
Query: 31 S----------------------MLLVGGVEVKA--DVKKIEEEGANLLIGTPGRLYDIM 66
+ L+VGG + D +++ + GA++L+GTPGRL +++
Sbjct: 164 TALNNKRKSSNHLVARKNMISGAQLVVGGSKCTPLDDYRQLRDSGADILVGTPGRLEELL 223
Query: 67 ERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126
+ V +L +LVLDEADRLLD+GF + + I+S LPK RRTGLFSAT T+A+ EL +
Sbjct: 224 SKKGVKK-SSLEVLVLDEADRLLDLGFTENLRRILSLLPKQRRTGLFSATMTDALSELVR 282
Query: 127 AGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPSQLVDLLIKNK 186
GLRNPVR+ V+ E+K H S+S S +TP L Y C + K +QL +++
Sbjct: 283 IGLRNPVRVVVKVEAK-HKTSSSIDD--SRRTPATLQNLYQLCRAQNKLAQLARIVLFES 339
Query: 187 SKKII 191
S+ I
Sbjct: 340 SQNAI 344
>sp|A7TJS7|SPB4_VANPO ATP-dependent rRNA helicase SPB4 OS=Vanderwaltozyma polyspora
(strain ATCC 22028 / DSM 70294) GN=SPB4 PE=3 SV=1
Length = 607
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 114/198 (57%), Gaps = 22/198 (11%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPD----VKSMLLVGG--VEVKADVKKIEEEGANLL 55
+I+SPT+EL+ QI+ V + F+ P+ ++S LLVG V+ DV E +L
Sbjct: 86 SLIVSPTKELAKQIHSVFESFLEHYPENLYPIRSQLLVGTNVKTVRDDVSDFMENKPQIL 145
Query: 56 IGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115
IGTPGR+ D + ++ + +++LDEADRLLD+ F K + I++ LPK RRTGLFSA
Sbjct: 146 IGTPGRILDFL-KIPSVKTSMCSMVILDEADRLLDVSFLKDMENIMNILPKQRRTGLFSA 204
Query: 116 TQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKP 175
T T A + + K GLRNPV++ V ++S++ P L ++ E+DKK
Sbjct: 205 TITSAGDNIFKTGLRNPVKVTVNSKSQA---------------PSSLKIDCAVVETDKKL 249
Query: 176 SQLVDLLIKNKSKKIIMY 193
Q++ ++ K KK I Y
Sbjct: 250 EQVISIINNYKFKKCIAY 267
>sp|Q54EC2|DDX55_DICDI Probable ATP-dependent RNA helicase ddx55 OS=Dictyostelium
discoideum GN=ddx55 PE=3 SV=1
Length = 663
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 117/239 (48%), Gaps = 56/239 (23%)
Query: 3 MIISPTRELSAQIYHVAQPFISTLPDV--------------------------------- 29
+IISPTREL+ QI V F++ L +
Sbjct: 87 IIISPTRELAIQIQQVLLEFLNDLNRIDDQNDLENIKTLEDELLEEQEEEENEKEEEEIE 146
Query: 30 ----------KSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM----DVLDFR 75
S+LL+GG ++ D+ + G N+LIGTPGR + + R+ F+
Sbjct: 147 KKKKKKKIEISSLLLIGGTDIYQDLVNYKNYGGNILIGTPGRTDEFLTRVVRNDQQFKFK 206
Query: 76 NLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRI 135
+L+LDEADRLLDMGF I+ I+ +LPK RRTGLFSATQT V+EL++ G+RNP ++
Sbjct: 207 EFEMLILDEADRLLDMGFHLPINSILLKLPKQRRTGLFSATQTSEVKELARTGMRNPFKV 266
Query: 136 EVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPSQLVDLLIKNKSK-KIIMY 193
V + H S P L Y+ +++ +QLV L+ + K KII+Y
Sbjct: 267 SVSVKHIETHEDQS--------IPTTLDNRYMIVPVEERLNQLVHFLLNHIDKNKIIIY 317
>sp|Q0UP45|SPB4_PHANO ATP-dependent rRNA helicase SPB4 OS=Phaeosphaeria nodorum (strain
SN15 / ATCC MYA-4574 / FGSC 10173) GN=SPB4 PE=3 SV=1
Length = 633
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 120/228 (52%), Gaps = 38/228 (16%)
Query: 2 GMIISPTRELSAQIYHVAQPFIS--------------------------------TLPDV 29
+IISPTREL+ QI+ V + TL V
Sbjct: 87 AIIISPTRELATQIHTVLSSLLKFHAPSAAMLEPDDEDTDMEDADTPPKPTFPPGTLKAV 146
Query: 30 KSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLVILVLDEADRL 88
+LL G V D+ ++ N+LIGTPGRL +++ V + LV+DEADRL
Sbjct: 147 PQLLLGGSVTPAQDLSAFLKKSPNILIGTPGRLLELLRSPHVHCPQSSFDALVMDEADRL 206
Query: 89 LDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASA 148
LD+GF++ + IISRLPK RRTGLFSA+ +EAV++L + GLRNPVRI V+ +++ A+
Sbjct: 207 LDLGFKEDLQKIISRLPKQRRTGLFSASMSEAVDQLIRVGLRNPVRIAVKVKAR---ATG 263
Query: 149 SSQQLASSKTPLGLHLEYLECESDKKPSQLVDLL--IKNKSKKIIMYV 194
++ +TP L + YL K + +L ++ + +K I+Y+
Sbjct: 264 EDGKIEDKRTPASLQMSYLVTPPSHKIPAMKKILSSLQPQPQKSILYL 311
>sp|P34640|DDX55_CAEEL Probable ATP-dependent RNA helicase DDX55 homolog OS=Caenorhabditis
elegans GN=ZK512.2 PE=3 SV=2
Length = 578
Score = 121 bits (304), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 112/200 (56%), Gaps = 17/200 (8%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+I+SP+REL +QI V QPF L ++ + GG +V ++K + + N+L+ TPGR
Sbjct: 83 ALILSPSRELCSQIVSVIQPFAEKL-NLTVETVTGGQKVDKNIKMFKNKNVNILVATPGR 141
Query: 62 LYDIMERMDVL---DFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118
L+ I++ L R L +LV+DEADR ++ F+ + I+S +PK RRTGLFSATQ
Sbjct: 142 LFQIIQHEKTLIARKMRTLQLLVIDEADRFNEIQFEDHMREILSCIPKQRRTGLFSATQV 201
Query: 119 EAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPSQL 178
+ ++L GLRN +++V E +S P L Y+EC +D+K S
Sbjct: 202 KEEDDLMVFGLRNAKQVKVAQER-------------NSAAPSTLKNYYVECRADEKTSVC 248
Query: 179 VDLLIKNKSKKIIMYVQHGN 198
++ + + KKI+++ N
Sbjct: 249 LEFIRQRTDKKILIFFPSCN 268
>sp|Q2UBZ5|SPB4_ASPOR ATP-dependent rRNA helicase spb4 OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=spb4 PE=3 SV=1
Length = 638
Score = 121 bits (304), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 106/192 (55%), Gaps = 34/192 (17%)
Query: 2 GMIISPTRELSAQIYHV------------------------AQPFISTLPDVKSMLLVGG 37
+IISPTREL++QIYHV Q F S+ V LL+GG
Sbjct: 90 AIIISPTRELASQIYHVLLSLLAFHPPSASVINPSEDDDVPRQKFPSSTLKVVPQLLLGG 149
Query: 38 VEVKA-DVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLVILVLDEADRLLDMGFQK 95
A D+ K ++ NLL+ TPGRL +++ V + +LVLDEADRLLD+GF++
Sbjct: 150 STTPAEDLSKFLKQSPNLLVSTPGRLLELLSSPHVHCPQSSFEMLVLDEADRLLDLGFKE 209
Query: 96 QISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLAS 155
+ II RLPK RRTGLFSA+ +EAV+++ + GLRNPV++ V+ + S
Sbjct: 210 TLQNIIRRLPKQRRTGLFSASISEAVDQIVRVGLRNPVKVMVKVKGTS--------GAQD 261
Query: 156 SKTPLGLHLEYL 167
+TP L + YL
Sbjct: 262 KRTPASLQMTYL 273
>sp|Q6C7D2|HAS1_YARLI ATP-dependent RNA helicase HAS1 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=HAS1 PE=3 SV=1
Length = 605
Score = 121 bits (303), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 120/197 (60%), Gaps = 16/197 (8%)
Query: 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+++SPTREL+ QIY VA+ ++ +++GG + + +K+ + G NLL+ TPGRL
Sbjct: 207 IVVSPTRELALQIYGVARDLMANHSQTLG-IVIGGNNRRQEEEKLNK-GVNLLVCTPGRL 264
Query: 63 YDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE 122
D ++ F+NL L++DEADR+L++GF++++ II LPK R++ LFSATQT VE
Sbjct: 265 LDHLQNSQGFVFKNLKALIIDEADRILEIGFEQEMKEIIKILPKERQSMLFSATQTTKVE 324
Query: 123 ELSKAGL-RNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPSQLVDL 181
+L++ L + P+ + V H+ S++++ GL Y+ C+SDK+ L
Sbjct: 325 DLARISLKKGPLYLNV----DEHNVSSTAE---------GLEQGYVVCDSDKRFLLLFSF 371
Query: 182 LIKNKSKKIIMYVQHGN 198
L +N KKII+++ N
Sbjct: 372 LKRNAGKKIIVFLSSCN 388
>sp|Q750F8|SPB4_ASHGO ATP-dependent rRNA helicase SPB4 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SPB4
PE=3 SV=2
Length = 599
Score = 121 bits (303), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 112/198 (56%), Gaps = 22/198 (11%)
Query: 3 MIISPTRELSAQIYHVAQPFISTLPD----VKSMLLVGG--VEVKADVKKIEEEGANLLI 56
+IISPTREL++QI V + F++ PD +KS LL+G V+ DV E +L+
Sbjct: 87 IIISPTRELASQIQGVIEAFLTYYPDGEYPIKSQLLIGSNTSSVRDDVAAFLEHRPQILV 146
Query: 57 GTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116
GTPGRL D + +M + + +LDEAD+LLDM F+K + I+ LPK RRTGLFSAT
Sbjct: 147 GTPGRLLDFL-KMPNIKTSSCGAAILDEADKLLDMNFEKDVETILKMLPKQRRTGLFSAT 205
Query: 117 QTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPS 176
+ A ++ K G+RNPV++ V+ S+K P L + Y+ E K
Sbjct: 206 VSSAGTQVFKTGMRNPVKVSVK---------------TSNKAPSSLDINYIVIEPRMKLQ 250
Query: 177 QLVDLLIKNKSKKIIMYV 194
L+ LL + KK I+Y+
Sbjct: 251 LLLTLLNNYRYKKCIVYL 268
>sp|Q4HVW2|SPB4_GIBZE ATP-dependent rRNA helicase SPB4 OS=Gibberella zeae (strain PH-1 /
ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=SPB4 PE=3
SV=1
Length = 637
Score = 120 bits (302), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 112/206 (54%), Gaps = 32/206 (15%)
Query: 2 GMIISPTRELSAQIYHV-----------------------AQPFISTLPDVKSMLLVGGV 38
+I+SPTREL+AQI+ V +PF +T+P + LLVGG
Sbjct: 90 AIIVSPTRELAAQIHTVLMKLLQFHEASAEILPHLKDDDEKRPF-TTVPAIVPQLLVGGT 148
Query: 39 EVKA-DVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLVILVLDEADRLLDMGFQKQ 96
D++ N+LI +PGRL ++M V + +LVLDEADRLLD+GF+
Sbjct: 149 TTTVQDLRFFLRHSPNVLISSPGRLVELMSSPHVHCPQSSFEVLVLDEADRLLDLGFKPD 208
Query: 97 ISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASS 156
+ I+S LPK RRTGLFSA+ +EAV E+ + GLRNPV+IEV+ + K L
Sbjct: 209 LQKILSHLPKQRRTGLFSASVSEAVGEIIRVGLRNPVKIEVKVKIK------GGGILEDR 262
Query: 157 KTPLGLHLEYLECESDKKPSQLVDLL 182
KTP L + Y+ + +K L +LL
Sbjct: 263 KTPASLQMTYMVKPASQKLPALAELL 288
>sp|Q9VHU1|DDX55_DROME Probable ATP-dependent RNA helicase DDX55 homolog OS=Drosophila
melanogaster GN=CG9630 PE=2 SV=1
Length = 613
Score = 120 bits (302), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 95/147 (64%), Gaps = 7/147 (4%)
Query: 2 GMIISPTRELSAQIYHVAQPFIS--TLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTP 59
++ISPTREL+ QI V F+ L + L+VGG ++ D+ + E +L+ TP
Sbjct: 85 ALVISPTRELARQISEVLAQFLEHEDLEHLNQQLIVGGNSIEEDIATLRRETPCILVCTP 144
Query: 60 GRLYDIMERM-DVLDF----RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114
GRL D+ +R D L+ ++L LVLDEADRLLD+GF+ ++ I+ LP+ RRTGLFS
Sbjct: 145 GRLEDLFQRKGDDLNLAAQVKSLEFLVLDEADRLLDLGFKTSVNNILGYLPRQRRTGLFS 204
Query: 115 ATQTEAVEELSKAGLRNPVRIEVRAES 141
ATQT V +L +AGLRNPV + V+ ++
Sbjct: 205 ATQTTEVTDLIRAGLRNPVLVSVKEKA 231
>sp|Q1EA54|HAS1_COCIM ATP-dependent RNA helicase HAS1 OS=Coccidioides immitis (strain RS)
GN=HAS1 PE=3 SV=1
Length = 604
Score = 120 bits (302), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 117/197 (59%), Gaps = 15/197 (7%)
Query: 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+++SPTREL+ QI+ VA+ ++ +++GG +A+ +K+ + G NLLI TPGRL
Sbjct: 200 IVVSPTRELALQIFGVARELMAHHSQTYG-IVIGGANRRAEAEKLTK-GVNLLIATPGRL 257
Query: 63 YDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSATQTEAV 121
D ++ D F+NL LV+DEADR+L++GF+ ++ I+ LP + R+T LFSATQT V
Sbjct: 258 LDHLQNTDGFVFKNLKALVIDEADRILEVGFEDEMRQIVKILPSEDRQTMLFSATQTTKV 317
Query: 122 EELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPSQLVDL 181
E+L++ LR P + + + + H++ GL Y+ C+SDK+ L
Sbjct: 318 EDLARISLR-PGPLYINVDHRKEHSTVE-----------GLEQGYVICDSDKRFLLLFSF 365
Query: 182 LIKNKSKKIIMYVQHGN 198
L +N KKII++ N
Sbjct: 366 LKRNLKKKIIVFFSSCN 382
>sp|Q54S03|DDX18_DICDI Probable ATP-dependent RNA helicase ddx18 OS=Dictyostelium
discoideum GN=ddx18 PE=3 SV=1
Length = 602
Score = 120 bits (302), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 75/197 (38%), Positives = 116/197 (58%), Gaps = 16/197 (8%)
Query: 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+IISPTREL+ QIY VA+ + +++GG K + +++E+ G NLL+ TPGRL
Sbjct: 195 IIISPTRELALQIYGVARELMKYHTQTHG-IVIGGASKKPEEERLEK-GVNLLVATPGRL 252
Query: 63 YDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE 122
D ++ +NL L++DEADR+L++GF++++ II ++PK R+T LFSATQT V+
Sbjct: 253 LDHLQNTKGFITKNLKCLIIDEADRILEVGFEEEMHQIIKKVPKTRQTMLFSATQTRKVD 312
Query: 123 ELSKAGLRN-PVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPSQLVDL 181
+++K L N PV + V E + T GL Y+ C S+++ L
Sbjct: 313 DIAKVSLNNSPVYVGVDDEREIS-------------TVEGLEQGYVVCPSERRFLLLYTF 359
Query: 182 LIKNKSKKIIMYVQHGN 198
L KN SKKII+++ N
Sbjct: 360 LKKNLSKKIIVFLSSCN 376
>sp|Q5BBY1|HAS1_EMENI ATP-dependent RNA helicase has1 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=has1
PE=3 SV=1
Length = 609
Score = 120 bits (300), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 115/197 (58%), Gaps = 15/197 (7%)
Query: 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+++SPTREL+ QI+ VA+ ++ +++GG +A+ +K+ + G NLLI TPGRL
Sbjct: 204 IVVSPTRELALQIFGVARELLTAHSQTYG-IVIGGANRRAEAEKLTK-GVNLLIATPGRL 261
Query: 63 YDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKL-RRTGLFSATQTEAV 121
D ++ F+NL LV+DEADR+L++GF+ ++ II LP R+T LFSATQT V
Sbjct: 262 LDHLQNTPGFVFKNLKTLVIDEADRILEVGFEDEMRQIIKILPNEDRQTMLFSATQTTKV 321
Query: 122 EELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPSQLVDL 181
E+L++ LR P + + + + H++ GL Y+ CE+DK+ L
Sbjct: 322 EDLARISLR-PGPLYINVDHRKEHSTVE-----------GLEQGYVICEADKRFLLLFSF 369
Query: 182 LIKNKSKKIIMYVQHGN 198
L +N KKII++ N
Sbjct: 370 LKRNLKKKIIVFFSSCN 386
>sp|P25808|SPB4_YEAST ATP-dependent rRNA helicase SPB4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SPB4 PE=1 SV=1
Length = 606
Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 104/198 (52%), Gaps = 22/198 (11%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPD----VKSMLLVGGVE--VKADVKKIEEEGANLL 55
+II+PTRELS QI V F+ P +K LLVG E V+ DV +L
Sbjct: 86 SLIIAPTRELSRQIESVVLSFLEHYPSDLFPIKCQLLVGTNEATVRDDVSNFLRNRPQIL 145
Query: 56 IGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115
IGTPGR+ D ++ M + ++V+DEADRLLDM F K I+ LPK RRTGLFSA
Sbjct: 146 IGTPGRVLDFLQ-MPAVKTSACSMVVMDEADRLLDMSFIKDTEKILRLLPKQRRTGLFSA 204
Query: 116 TQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKP 175
T A ++ K GLRNPVRI V +++++ P L L Y +K
Sbjct: 205 TMRSAGSDIFKTGLRNPVRITVNSKNQA---------------PSSLKLNYCVVNPAEKL 249
Query: 176 SQLVDLLIKNKSKKIIMY 193
LV +L K KK I+Y
Sbjct: 250 QLLVSILNNYKFKKCIVY 267
>sp|A7A237|SPB4_YEAS7 ATP-dependent rRNA helicase SPB4 OS=Saccharomyces cerevisiae
(strain YJM789) GN=SPB4 PE=3 SV=1
Length = 606
Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 104/198 (52%), Gaps = 22/198 (11%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPD----VKSMLLVGGVE--VKADVKKIEEEGANLL 55
+II+PTRELS QI V F+ P +K LLVG E V+ DV +L
Sbjct: 86 SLIIAPTRELSRQIESVVLSFLEHYPSDLFPIKCQLLVGTNEATVRDDVSNFLRNRPQIL 145
Query: 56 IGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115
IGTPGR+ D ++ M + ++V+DEADRLLDM F K I+ LPK RRTGLFSA
Sbjct: 146 IGTPGRVLDFLQ-MPAVKTSACSMVVMDEADRLLDMSFIKDTEKILRLLPKQRRTGLFSA 204
Query: 116 TQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKP 175
T A ++ K GLRNPVRI V +++++ P L L Y +K
Sbjct: 205 TMRSAGSDIFKTGLRNPVRITVNSKNQA---------------PSSLKLNYCVVNPAEKL 249
Query: 176 SQLVDLLIKNKSKKIIMY 193
LV +L K KK I+Y
Sbjct: 250 QLLVSILNNYKFKKCIVY 267
>sp|Q6CN92|SPB4_KLULA ATP-dependent rRNA helicase SPB4 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=SPB4 PE=3 SV=1
Length = 596
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 92/143 (64%), Gaps = 7/143 (4%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPD----VKSMLLVG--GVEVKADVKKIEEEGANLL 55
+IISPTREL++QI+ V + F+ PD ++S LLVG V+ D+ + +L
Sbjct: 86 SLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNRPQIL 145
Query: 56 IGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115
+GTPGR+ D +++ +V + +VLDEAD+LLD+ FQK + I+ LPK RRTGLFSA
Sbjct: 146 VGTPGRVLDFLQKTNV-KTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRTGLFSA 204
Query: 116 TQTEAVEELSKAGLRNPVRIEVR 138
T A ++ K G+RNPV++ V+
Sbjct: 205 TIESAGAQIFKTGMRNPVKVAVK 227
>sp|A4R8B5|HAS1_MAGO7 ATP-dependent RNA helicase HAS1 OS=Magnaporthe oryzae (strain 70-15
/ ATCC MYA-4617 / FGSC 8958) GN=HAS1 PE=3 SV=2
Length = 587
Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 115/197 (58%), Gaps = 17/197 (8%)
Query: 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+++SPTREL+ QI+ VA+ + +++GG +A+ +K+ + G NLLI TPGRL
Sbjct: 188 IVVSPTRELALQIFGVARDLMKHHSQTYG-IVIGGANRRAEAEKLSK-GVNLLIATPGRL 245
Query: 63 YDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE 122
D ++ + F+NL LV+DEADR+L++GF+ ++ II LPK R++ LFSATQT VE
Sbjct: 246 LDHLQNTPFV-FKNLRSLVIDEADRILEIGFEDEMRQIIKILPKERQSMLFSATQTTKVE 304
Query: 123 ELSKAGLR-NPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPSQLVDL 181
+L++ LR P+ + V E + T GL Y+ CE+DK+ L
Sbjct: 305 DLARVSLRPGPLYLNVDEEKEYS-------------TVEGLEQGYVVCEADKRFILLFSF 351
Query: 182 LIKNKSKKIIMYVQHGN 198
L K K KKII++ N
Sbjct: 352 LQKMKKKKIIVFFSSCN 368
>sp|Q59N29|SPB41_CANAL ATP-dependent rRNA helicase SPB41 OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=SPB41 PE=3 SV=1
Length = 631
Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 115/199 (57%), Gaps = 15/199 (7%)
Query: 1 MGMIISPTRELSAQIYHVAQPFISTLPD-----VKSMLLVGGV-EVKADVKKIEEEGANL 54
+ +++SPTREL+ QI V + LP+ + + LLVG + V+ D+ + +
Sbjct: 95 LSIVLSPTRELANQIQSVFNQVLQYLPEDKGTRINTQLLVGSIGNVREDLNQFLTNQPQI 154
Query: 55 LIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114
LIGTPGR+ + + + +L I++LDEAD+LLD F+K + I+ +LPK RRTGLFS
Sbjct: 155 LIGTPGRILEFLGSSQSIKTSSLEIVILDEADKLLDFSFEKDVINILKKLPKQRRTGLFS 214
Query: 115 ATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKK 174
AT + A + + G+ NPV+++V+ SK++ S+ +P L L Y+ + K
Sbjct: 215 ATISSAGNTIFRTGMNNPVKVQVK--SKNYFGEQSN-------SPKSLQLSYMMINPELK 265
Query: 175 PSQLVDLLIKNKSKKIIMY 193
+ L+ +L K + KK I+Y
Sbjct: 266 ITTLLTILSKYQYKKAIVY 284
>sp|Q6BH93|HAS1_DEBHA ATP-dependent RNA helicase HAS1 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=HAS1 PE=3 SV=1
Length = 568
Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 118/198 (59%), Gaps = 17/198 (8%)
Query: 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+++SPTREL+ QI+ VA+ ++ +++GG + + +K+ + G NLLI TPGRL
Sbjct: 180 VVVSPTRELALQIFGVARELMAHHSQTFG-IVIGGANRRQEAEKLMK-GVNLLIATPGRL 237
Query: 63 YDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKL-RRTGLFSATQTEAV 121
D ++ F+N+ LV+DEADR+L++GF++++ II LP R++ LFSATQT V
Sbjct: 238 LDHLQNTQGFVFKNVKALVIDEADRILEIGFEEEMKQIIKILPNEDRQSMLFSATQTTKV 297
Query: 122 EELSKAGLR-NPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPSQLVD 180
E+L++ LR P+ I V +ES+ + T GL Y+ CESDK+ L
Sbjct: 298 EDLARISLRPGPLYINVASESE-------------ASTVAGLEQGYVVCESDKRFLLLFS 344
Query: 181 LLIKNKSKKIIMYVQHGN 198
L +N KKII+++ N
Sbjct: 345 FLKRNVKKKIIVFLSSCN 362
>sp|A2Q9T6|HAS1_ASPNC ATP-dependent RNA helicase has1 OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=has1 PE=3 SV=1
Length = 606
Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 116/197 (58%), Gaps = 15/197 (7%)
Query: 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+++SPTREL+ QI+ VA+ ++ +++GG +A+ +K+ + G NLLI TPGRL
Sbjct: 201 LVVSPTRELALQIFGVARELMAHHSQTYG-IVIGGANRRAEAEKLTK-GVNLLIATPGRL 258
Query: 63 YDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSATQTEAV 121
D ++ F+NL LV+DEADR+L++GF+ ++ I+ LP + R+T LFSATQT V
Sbjct: 259 LDHLQNTPGFVFKNLKTLVIDEADRILEVGFEDEMRQIVKILPSEERQTMLFSATQTTKV 318
Query: 122 EELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPSQLVDL 181
E+L++ LR P + + + + H++ GL Y+ CE+DK+ L
Sbjct: 319 EDLARISLR-PGPLYINVDHRKEHSTVE-----------GLEQGYVICEADKRFLLLFSF 366
Query: 182 LIKNKSKKIIMYVQHGN 198
L +N KKII++ N
Sbjct: 367 LKRNLKKKIIVFFSSCN 383
>sp|Q59NP8|SPB42_CANAL ATP-dependent rRNA helicase SPB42 OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=SPB42 PE=3 SV=1
Length = 631
Score = 118 bits (296), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 115/199 (57%), Gaps = 15/199 (7%)
Query: 1 MGMIISPTRELSAQIYHVAQPFISTLPD-----VKSMLLVGGV-EVKADVKKIEEEGANL 54
+ +++SPTREL+ QI V + LP+ + + LLVG + V+ D+ + +
Sbjct: 95 LSIVLSPTRELANQIQSVFNQVLQYLPEDKGTRINTQLLVGSIGNVREDLNQFLTNQPQI 154
Query: 55 LIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114
LIGTPGR+ + + + +L I++LDEAD+LLD F+K + I+ +LPK RRTGLFS
Sbjct: 155 LIGTPGRILEFLGSSQSIKTSSLEIVILDEADKLLDFSFEKDVINILKKLPKQRRTGLFS 214
Query: 115 ATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKK 174
AT + A + + G+ NPV+++V+ SK++ S+ +P L L Y+ + K
Sbjct: 215 ATISSAGNTIFRTGMNNPVKVQVK--SKNYFGEQSN-------SPKSLQLSYMMINPELK 265
Query: 175 PSQLVDLLIKNKSKKIIMY 193
+ L+ +L K + KK I+Y
Sbjct: 266 ITTLLTILSKYQYKKAIVY 284
>sp|Q6FKS8|SPB4_CANGA ATP-dependent rRNA helicase SPB4 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=SPB4 PE=3 SV=1
Length = 617
Score = 118 bits (295), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 114/198 (57%), Gaps = 21/198 (10%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPD----VKSMLLVGGVE--VKADVKKIEEEGANLL 55
+I++PTRELS QI +V F+ P+ ++S L+VG E V+ DV + +E +L
Sbjct: 86 SLILAPTRELSMQIQNVVSSFLEHYPEDQYPIRSQLVVGTNEKSVRDDVNTLLDERPQIL 145
Query: 56 IGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115
IGTPGR+ D ++ V + ++VLDEADRLLD+ F K + I++ LPK RRTGLFSA
Sbjct: 146 IGTPGRVLDFLQSPSV-KTSSCGMVVLDEADRLLDVSFFKDVEKILNVLPKQRRTGLFSA 204
Query: 116 TQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKP 175
T + A + K GLRNPV+I V ++ K+ P L+L Y + ++K
Sbjct: 205 TISSAGTLIFKTGLRNPVKITVNSQGKN--------------APTTLNLFYSVMKPEEKL 250
Query: 176 SQLVDLLIKNKSKKIIMY 193
L+ ++ + KK I+Y
Sbjct: 251 QNLIHIMNNIRFKKCIVY 268
>sp|A5E2I8|SPB4_LODEL ATP-dependent rRNA helicase SPB4 OS=Lodderomyces elongisporus
(strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 /
NRRL YB-4239) GN=SPB4 PE=3 SV=1
Length = 637
Score = 117 bits (294), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 117/201 (58%), Gaps = 18/201 (8%)
Query: 1 MGMIISPTRELSAQIYHVAQPFISTLPD-------VKSMLLVGGV-EVKADVKKIEEEGA 52
+ ++++PTREL+ QI V + LP+ +K+ LLVG + V+ D+ +E
Sbjct: 95 LAIVMAPTRELAKQIQMVFDKVLELLPEEDSYEPRIKTQLLVGFLGNVREDLDSYQENRP 154
Query: 53 NLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGL 112
+LI TPGRL D M + ++ +L I++LDEAD+LLDM F+ + I+ LPK RRTGL
Sbjct: 155 QILIATPGRLLDFMS-LQIVKTSSLEIVILDEADKLLDMSFETDVIKILKMLPKQRRTGL 213
Query: 113 FSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESD 172
FSAT + A + + + G+ NPV+++V+ +K+ ++ P L L Y+ E +
Sbjct: 214 FSATISAAGDTIFRTGMNNPVKLQVK--TKNFLGEQNN-------APTSLQLSYMMIEPE 264
Query: 173 KKPSQLVDLLIKNKSKKIIMY 193
K + ++ +L N+ KK I+Y
Sbjct: 265 HKLTTMLQMLRDNQFKKAIVY 285
>sp|A3LNR6|HAS1_PICST ATP-dependent RNA helicase HAS1 OS=Scheffersomyces stipitis (strain
ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545)
GN=HAS1 PE=3 SV=2
Length = 567
Score = 117 bits (294), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 116/198 (58%), Gaps = 17/198 (8%)
Query: 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+++SPTREL+ QI+ VA+ ++ +++GG + + +K+ + G NLLI TPGRL
Sbjct: 179 IVVSPTRELALQIFGVARELMAHHTQTFG-IVIGGANRRQEAEKLAK-GVNLLIATPGRL 236
Query: 63 YDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPK-LRRTGLFSATQTEAV 121
D ++ F+NL LV+DEADR+L++GF++++ II LPK R++ LFSATQT V
Sbjct: 237 LDHLQNTQGFVFKNLKALVIDEADRILEIGFEEEMKQIIKILPKEERQSMLFSATQTTKV 296
Query: 122 EELSKAGLR-NPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPSQLVD 180
E+L++ LR P+ I V E+ + A GL Y+ C+SDK+ L
Sbjct: 297 EDLARISLRPGPLYINVVPETAASTAD-------------GLEQGYVVCDSDKRFLLLFS 343
Query: 181 LLIKNKSKKIIMYVQHGN 198
L K KKII+++ N
Sbjct: 344 FLKKYSKKKIIVFLSSCN 361
>sp|Q6FIL3|HAS1_CANGA ATP-dependent RNA helicase HAS1 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=HAS1 PE=3 SV=1
Length = 494
Score = 117 bits (293), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 114/198 (57%), Gaps = 17/198 (8%)
Query: 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+II+PTREL+ QI+ V + + +++GG + + +K+ + G NLL+ TPGRL
Sbjct: 105 IIITPTRELALQIFGVVRELMEFHSQTFG-IVIGGANRRQEAEKLMK-GVNLLVATPGRL 162
Query: 63 YDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKL-RRTGLFSATQTEAV 121
D ++ F+NL LV+DEADR+L++GF+ ++ II LP R++ LFSATQT V
Sbjct: 163 LDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKV 222
Query: 122 EELSKAGLR-NPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPSQLVD 180
E+LS+ LR P+ I V +E S A GL Y+ CESDK+ L
Sbjct: 223 EDLSRISLRPGPLFINVVSEHDSSTAD-------------GLEQGYVVCESDKRFLLLFS 269
Query: 181 LLIKNKSKKIIMYVQHGN 198
L +N+ KKII+++ N
Sbjct: 270 FLKRNQKKKIIVFLSSCN 287
>sp|Q4WQM4|HAS1_ASPFU ATP-dependent RNA helicase has1 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=has1
PE=3 SV=2
Length = 622
Score = 117 bits (293), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 114/197 (57%), Gaps = 15/197 (7%)
Query: 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+++SPTREL+ QI+ VA+ +++GG +A+ +K+ + G NLLI TPGRL
Sbjct: 216 IVVSPTRELALQIFGVARELCQYHSQTYG-IVIGGANRRAEAEKLMK-GVNLLIATPGRL 273
Query: 63 YDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSATQTEAV 121
D ++ F+NL LV+DEADR+L++GF+ ++ I+ LP + R+T LFSATQT V
Sbjct: 274 LDHLQNTQGFVFKNLKTLVIDEADRILEVGFEDEMRQIVKILPSEERQTMLFSATQTTKV 333
Query: 122 EELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPSQLVDL 181
E+L++ LR P + + + + H++ GL Y+ CE+DK+ L
Sbjct: 334 EDLARISLR-PGPLYINVDHRKEHSTVE-----------GLEQGYVICEADKRFLLLFSF 381
Query: 182 LIKNKSKKIIMYVQHGN 198
L +N KKII++ N
Sbjct: 382 LKRNLKKKIIVFFSSCN 398
>sp|A1CIQ5|HAS1_ASPCL ATP-dependent RNA helicase has1 OS=Aspergillus clavatus (strain
ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1)
GN=has1 PE=3 SV=1
Length = 625
Score = 117 bits (293), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 114/197 (57%), Gaps = 15/197 (7%)
Query: 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+++SPTREL+ QI+ VA+ +++GG +A+ +K+ + G NLLI TPGRL
Sbjct: 219 LVVSPTRELALQIFGVARELCQHHSQTYG-IVIGGANRRAEAEKLMK-GVNLLIATPGRL 276
Query: 63 YDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSATQTEAV 121
D ++ F+NL LV+DEADR+L++GF+ ++ I+ LP + R+T LFSATQT V
Sbjct: 277 LDHLQNTQGFVFKNLKTLVIDEADRILEVGFEDEMRQIVKILPSEERQTMLFSATQTTKV 336
Query: 122 EELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPSQLVDL 181
E+L++ LR P + + + + H++ GL Y+ CE+DK+ L
Sbjct: 337 EDLARISLR-PGPLYINVDHRKEHSTVE-----------GLEQGYVICEADKRFLLLFSF 384
Query: 182 LIKNKSKKIIMYVQHGN 198
L +N KKII++ N
Sbjct: 385 LKRNLKKKIIVFFSSCN 401
>sp|A1CW14|HAS1_NEOFI ATP-dependent RNA helicase has1 OS=Neosartorya fischeri (strain
ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=has1
PE=3 SV=1
Length = 622
Score = 117 bits (292), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 114/197 (57%), Gaps = 15/197 (7%)
Query: 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+++SPTREL+ QI+ VA+ +++GG +A+ +K+ + G NLLI TPGRL
Sbjct: 216 IVVSPTRELALQIFGVARELCQYHSQTYG-IVIGGANRRAEAEKLMK-GVNLLIATPGRL 273
Query: 63 YDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSATQTEAV 121
D ++ F+NL LV+DEADR+L++GF+ ++ I+ LP + R+T LFSATQT V
Sbjct: 274 LDHLQNTQGFIFKNLKTLVIDEADRILEVGFEDEMRQIVKILPSEERQTMLFSATQTTKV 333
Query: 122 EELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPSQLVDL 181
E+L++ LR P + + + + H++ GL Y+ CE+DK+ L
Sbjct: 334 EDLARISLR-PGPLYINVDHRKEHSTVE-----------GLEQGYVICEADKRFLLLFSF 381
Query: 182 LIKNKSKKIIMYVQHGN 198
L +N KKII++ N
Sbjct: 382 LKRNLKKKIIVFFSSCN 398
>sp|O74764|SPB4_SCHPO ATP-dependent rRNA helicase spb4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=spb4 PE=3 SV=1
Length = 606
Score = 117 bits (292), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 112/201 (55%), Gaps = 22/201 (10%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPD--------VKSMLLVGGVEVKADVKKIEEEGAN 53
+I++PTREL+ QI++V + ++ PD V M + G + D+ E+ +
Sbjct: 75 ALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLTNDLASFREKNPS 134
Query: 54 LLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLF 113
++IGTPGRL +++ + ++L IL+LDEAD L+DMGFQ+ + IIS+LPK RRTGLF
Sbjct: 135 VVIGTPGRLNEMLSHISS---KHLEILILDEADTLIDMGFQRTLQSIISQLPKQRRTGLF 191
Query: 114 SATQTEAVEELSK-AGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESD 172
SAT + V K AGLRN VR+ V SK ++TP L ++ L
Sbjct: 192 SATMNDTVSSFLKIAGLRNSVRVSVTVTSKK----------IDTRTPSSLAIQSLVIPPI 241
Query: 173 KKPSQLVDLLIKNKSKKIIMY 193
K ++ LL + +K I++
Sbjct: 242 YKVQCMIHLLCTIEYEKAIVF 262
>sp|Q0UR48|HAS1_PHANO ATP-dependent RNA helicase HAS1 OS=Phaeosphaeria nodorum (strain
SN15 / ATCC MYA-4574 / FGSC 10173) GN=HAS1 PE=3 SV=1
Length = 610
Score = 116 bits (291), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 114/197 (57%), Gaps = 16/197 (8%)
Query: 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+++SPTREL+ QI+ VA+ + +++GG +A+ +K+ + G NLLI TPGRL
Sbjct: 207 IVVSPTRELALQIFGVARELMEKHSQTFG-IVIGGANRRAEAEKLAK-GVNLLIATPGRL 264
Query: 63 YDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE 122
D + F+NL L++DEADR+L++GF+ ++ II LP R+T LFSATQT VE
Sbjct: 265 LDHLHNTQGFVFKNLKSLIIDEADRILEVGFEDEMRSIIKILPTDRQTMLFSATQTTKVE 324
Query: 123 ELSKAGLR-NPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPSQLVDL 181
+L++ L+ P+ I V + + H++ GL Y+ C+SD + L
Sbjct: 325 DLARISLKAGPLYINV--DYRKEHSTVE-----------GLEQGYVICDSDTRFRLLFSF 371
Query: 182 LIKNKSKKIIMYVQHGN 198
L K++ KK+I++ N
Sbjct: 372 LKKHQKKKVIVFFSSCN 388
>sp|Q7RZ35|DBP4_NEUCR ATP-dependent RNA helicase dbp-4 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=dbp-4 PE=3 SV=1
Length = 823
Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 113/196 (57%), Gaps = 16/196 (8%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+IISPTREL+ QI+ V + I + L++GG +K + +++ N+L+ TPGR
Sbjct: 132 ALIISPTRELAVQIFEVLRK-IGRNHSFSAGLVIGGKSLKEEAERLGR--MNILVCTPGR 188
Query: 62 LYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
+ +++ D NL +LVLDEADR++DMGFQ+ + ++ LPK R+T LFSATQ++ V
Sbjct: 189 MLQHLDQTAGFDVDNLQMLVLDEADRIMDMGFQQAVDALVEHLPKSRQTLLFSATQSKRV 248
Query: 122 EELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPSQLVDL 181
+L++ L++P + V H A+AS+ TP+GL Y+ +K L
Sbjct: 249 SDLARLSLKDPEYVSV------HEAAASA-------TPVGLQQHYIVTPLPEKLDTLWGF 295
Query: 182 LIKNKSKKIIMYVQHG 197
L N KII+++ G
Sbjct: 296 LRTNLKSKIIVFMSSG 311
>sp|Q1E1R7|SPB4_COCIM ATP-dependent rRNA helicase SPB4 OS=Coccidioides immitis (strain
RS) GN=SPB4 PE=3 SV=2
Length = 653
Score = 116 bits (290), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 116/225 (51%), Gaps = 41/225 (18%)
Query: 2 GMIISPTRELSAQIYHV--------------AQPFIS--------TLPDVKS-------M 32
+I+SPTREL+ QIY V QP S TLP S
Sbjct: 93 AIIVSPTRELAEQIYKVLLSLLAFHAPSAAAIQPSTSDETADGETTLPSYPSSTLKVVPQ 152
Query: 33 LLVGGVEVKA-DVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLVILVLDEADRLLD 90
LL+GG A D+ + NL + TPGRL +++ V + +LVLDEADRLLD
Sbjct: 153 LLLGGATTPAQDLSTFLKRSPNLFVSTPGRLLELLSSPHVHCPQTSFEVLVLDEADRLLD 212
Query: 91 MGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASS 150
+GF+ + ++RLPK RRTGLFSAT ++AV+++ + GLRNPV+I V+ + A +
Sbjct: 213 LGFKDDLQKTLARLPKQRRTGLFSATVSDAVDQIIRVGLRNPVKIAVKVKG----APGTE 268
Query: 151 QQLASSKTPLGLHLEYLECESDKKPSQLVDLL--IKNKSKKIIMY 193
++ +TP L + YL K + +L I N +K I+Y
Sbjct: 269 EK----RTPASLQMTYLLTRPSHKIPAIRQILNSIDNTPQKTILY 309
>sp|A2QE29|SPB4_ASPNC ATP-dependent rRNA helicase spb4 OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=spb4 PE=3 SV=2
Length = 642
Score = 116 bits (290), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 116/222 (52%), Gaps = 37/222 (16%)
Query: 2 GMIISPTRELSAQIYHV-------------------------AQPFISTLPDVKSMLLVG 36
+IISPTREL++QIY+V Q F S+ V LL+G
Sbjct: 90 AIIISPTRELASQIYNVLTSLLAFHPPSASTLKPSDDDDDAPRQKFPSSTLKVVPQLLLG 149
Query: 37 GVEVKA-DVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLVILVLDEADRLLDMGFQ 94
G A D+ + NLL+ TPGRL +++ V + +LV+DEADRLLD+GF+
Sbjct: 150 GSTTPAEDLSTFLKRSPNLLVSTPGRLLELLSSPHVHCPQSSFEMLVMDEADRLLDLGFK 209
Query: 95 KQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLA 154
+ I+ RLPK RRTGLFSA+ +EAV+++ + GLRNPV++ V+ + S +
Sbjct: 210 DTLQNILRRLPKQRRTGLFSASVSEAVDQIVRVGLRNPVKVMVKVKGTS--------GVQ 261
Query: 155 SSKTPLGLHLEYLECESDKKPSQLVDLL--IKNKSKKIIMYV 194
+TP L + YL K + +L ++ +K IM+V
Sbjct: 262 DKRTPASLQMTYLTAPPTHKFPAIKHILYSLEPAPQKTIMFV 303
>sp|Q6CXB7|HAS1_KLULA ATP-dependent RNA helicase HAS1 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=HAS1 PE=3 SV=1
Length = 497
Score = 116 bits (290), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 114/198 (57%), Gaps = 17/198 (8%)
Query: 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
++I+PTREL+ QI+ VA+ + +++GG + + K+ + G N+LI TPGRL
Sbjct: 110 IVITPTRELALQIFGVARELMEFHSQTFG-IVIGGANRRQEADKLMK-GVNILIATPGRL 167
Query: 63 YDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKL-RRTGLFSATQTEAV 121
D ++ F+NL LV+DEADR+L++GF+ ++ II LP R++ LFSATQT V
Sbjct: 168 LDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKV 227
Query: 122 EELSKAGLR-NPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPSQLVD 180
E+L++ LR P+ I V +E + A GL Y+ CESDK+ L
Sbjct: 228 EDLARISLRPGPLFINVDSEKDTSTAD-------------GLEQGYVVCESDKRFLLLFS 274
Query: 181 LLIKNKSKKIIMYVQHGN 198
L +N+ KK+I+++ N
Sbjct: 275 FLKRNQKKKVIVFLSSCN 292
>sp|Q74Z73|HAS1_ASHGO ATP-dependent RNA helicase HAS1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=HAS1
PE=3 SV=2
Length = 504
Score = 115 bits (289), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 116/198 (58%), Gaps = 17/198 (8%)
Query: 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
++I+PTREL+ QI+ VA+ + +++GG + + +K+ + G NLLI TPGRL
Sbjct: 115 IVITPTRELALQIFGVARELMEFHSQTFG-IVIGGANRRQEAEKLAK-GVNLLIATPGRL 172
Query: 63 YDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKL-RRTGLFSATQTEAV 121
D ++ F+NL LV+DEADR+L++GF+ ++ II LP R++ LFSATQT V
Sbjct: 173 LDHLQNTKGFVFKNLKALVIDEADRILEIGFEDEMKQIIKILPNEDRQSMLFSATQTTKV 232
Query: 122 EELSKAGLR-NPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPSQLVD 180
E+L++ LR P+ I V +E ++ A GL Y+ C+SDK+ L
Sbjct: 233 EDLARISLRPGPLFINVDSEKETSTAD-------------GLEQGYVVCDSDKRFLLLFT 279
Query: 181 LLIKNKSKKIIMYVQHGN 198
L K ++KKII+++ N
Sbjct: 280 FLKKFQNKKIIVFLSSCN 297
>sp|A1CL59|SPB4_ASPCL ATP-dependent rRNA helicase spb4 OS=Aspergillus clavatus (strain
ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1)
GN=spb4 PE=3 SV=1
Length = 639
Score = 115 bits (288), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 36/221 (16%)
Query: 2 GMIISPTRELSAQIYHVAQPFI-------------------------STLPDVKSMLLVG 36
+IISPTREL++QI+ V Q + STL V +LL G
Sbjct: 90 AIIISPTRELASQIHSVMQSLLAFHPPSAAAMTPLDDDDAPRQKFPSSTLKVVPQLLLGG 149
Query: 37 GVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLVILVLDEADRLLDMGFQK 95
D+ + + N+L+ TPGRL +++ V + +LVLDEADRLLD+GF++
Sbjct: 150 STTPAEDLSRFLKLSPNVLVSTPGRLLELLSSPHVHCPQSSFEMLVLDEADRLLDLGFKE 209
Query: 96 QISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLAS 155
+ I+ RLPK RRTGLFSA+ +EAV+++ + GLRNPV+I V+ + S +
Sbjct: 210 TLQNILRRLPKQRRTGLFSASVSEAVDQIVRVGLRNPVKIMVKVKGTS--------GVDD 261
Query: 156 SKTPLGLHLEYLECESDKKPSQLVDLL--IKNKSKKIIMYV 194
+TP L + YL K + L ++L ++ +K I +V
Sbjct: 262 KRTPASLQMTYLSTPPLHKFAALKNILSSVQPTPQKSIFFV 302
>sp|Q80Y44|DDX10_MOUSE Probable ATP-dependent RNA helicase DDX10 OS=Mus musculus GN=Ddx10
PE=1 SV=2
Length = 875
Score = 115 bits (288), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 109/191 (57%), Gaps = 16/191 (8%)
Query: 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+IISPTREL+ Q + V + + D + L++GG ++K + ++I N+L+ TPGRL
Sbjct: 145 LIISPTRELAYQTFEVLRK-VGKNHDFSAGLIIGGKDLKHEAERIN--NINILVCTPGRL 201
Query: 63 YDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE 122
M+ NL +LVLDEADR+LDMGF ++ II LPK R+T LFSATQT++V+
Sbjct: 202 LQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKRQTLLFSATQTKSVK 261
Query: 123 ELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPSQLVDLL 182
+L++ L++P + V ++K TP L Y+ CE +K S L L
Sbjct: 262 DLARLSLKDPEYVWVHEKAK-------------YSTPATLEQNYIICELHQKISVLFSFL 308
Query: 183 IKNKSKKIIMY 193
+ KK I++
Sbjct: 309 RSHLKKKSIVF 319
>sp|Q4IAS1|DBP4_GIBZE ATP-dependent RNA helicase DBP4 OS=Gibberella zeae (strain PH-1 /
ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=DBP4 PE=3
SV=1
Length = 793
Score = 115 bits (288), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 111/196 (56%), Gaps = 16/196 (8%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+IISPTREL+AQI+ V + + T + L++GG +K + ++++ N+L+ TPGR
Sbjct: 126 ALIISPTRELAAQIFEVLRK-VGTKHSFSAGLVIGGKSLKEEAERLDR--MNILVCTPGR 182
Query: 62 LYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
+ ++ D NL ILVLDEADR++DMGFQ + +I LP+ R+T +FSATQ++ V
Sbjct: 183 MLQHFDQTAGFDANNLQILVLDEADRIMDMGFQSAVDALIEHLPRERQTLMFSATQSKKV 242
Query: 122 EELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPSQLVDL 181
+L++ L++P + V H A+ S+ TP L Y+ +K L
Sbjct: 243 SDLARLSLKDPEYVSV------HEAAVSA-------TPTNLQQHYIVTPLTEKLDTLYGF 289
Query: 182 LIKNKSKKIIMYVQHG 197
+ N KII+++ G
Sbjct: 290 IKANLKSKIIVFLSSG 305
>sp|Q2GV49|SPB4_CHAGB ATP-dependent rRNA helicase SPB4 OS=Chaetomium globosum (strain
ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL
1970) GN=SPB4 PE=3 SV=1
Length = 646
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 117/218 (53%), Gaps = 31/218 (14%)
Query: 2 GMIISPTRELSAQIYHVAQPFI---------------------STLPDVKSMLLVGGVEV 40
+IISPTREL++QIY+V F+ +T P V LLVGG
Sbjct: 91 AIIISPTRELASQIYNVLVSFLKFHAPSAHLLPHAKGDEKRPATTEPVVVPQLLVGGTTK 150
Query: 41 KA-DVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLVILVLDEADRLLDMGFQKQIS 98
A D+ N+LIGTPGRL +++ V + +LV+DEADRLLD+GF ++++
Sbjct: 151 AAEDLSTFLRLSPNILIGTPGRLAELLSTPYVKAPSSSFEVLVMDEADRLLDLGFSQELT 210
Query: 99 YIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKT 158
I+ LPK RRTGLFSA+ +EAVE L GL P +I VR +S + KT
Sbjct: 211 RILGYLPKQRRTGLFSASLSEAVERLITVGLLYPHKITVRVKSLRDGGIVQER-----KT 265
Query: 159 PLGLHLEYLECESDKK-PS--QLVDLLIKNKSKKIIMY 193
P+ L + Y+ + +K P+ QL++ L S+ I+ +
Sbjct: 266 PMSLQMSYIVTPASQKIPALCQLLERLEPRPSRSIVFF 303
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,042,374
Number of Sequences: 539616
Number of extensions: 2622651
Number of successful extensions: 12502
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 202
Number of HSP's that attempted gapping in prelim test: 9257
Number of HSP's gapped (non-prelim): 1275
length of query: 203
length of database: 191,569,459
effective HSP length: 112
effective length of query: 91
effective length of database: 131,132,467
effective search space: 11933054497
effective search space used: 11933054497
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)