Query 028826
Match_columns 203
No_of_seqs 133 out of 1342
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 03:09:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028826.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028826hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0330 ATP-dependent RNA heli 100.0 2.2E-40 4.8E-45 263.7 14.9 184 1-201 131-314 (476)
2 KOG0331 ATP-dependent RNA heli 100.0 1.3E-39 2.8E-44 272.0 15.3 186 1-202 167-356 (519)
3 KOG0328 Predicted ATP-dependen 100.0 5.2E-39 1.1E-43 246.9 17.0 183 1-201 97-280 (400)
4 COG0513 SrmB Superfamily II DN 100.0 1.1E-38 2.3E-43 273.4 19.5 186 2-202 102-288 (513)
5 KOG0343 RNA Helicase [RNA proc 100.0 2.3E-37 5.1E-42 255.6 17.3 183 2-200 144-326 (758)
6 KOG0338 ATP-dependent RNA heli 100.0 1.8E-37 3.8E-42 254.3 14.9 184 2-202 255-441 (691)
7 KOG0345 ATP-dependent RNA heli 100.0 5.6E-37 1.2E-41 249.2 16.9 187 2-201 82-269 (567)
8 KOG0326 ATP-dependent RNA heli 100.0 3.1E-37 6.7E-42 240.7 12.4 182 1-201 155-336 (459)
9 KOG0339 ATP-dependent RNA heli 100.0 2.4E-35 5.2E-40 241.8 17.8 184 1-202 298-483 (731)
10 KOG0333 U5 snRNP-like RNA heli 100.0 4E-35 8.6E-40 241.1 15.8 183 1-201 324-531 (673)
11 KOG0342 ATP-dependent RNA heli 100.0 1.1E-34 2.4E-39 236.9 18.1 186 1-200 156-343 (543)
12 KOG4284 DEAD box protein [Tran 100.0 4.4E-34 9.5E-39 239.9 14.4 183 1-201 95-286 (980)
13 PRK11776 ATP-dependent RNA hel 100.0 2.6E-33 5.6E-38 238.4 19.4 184 1-202 74-257 (460)
14 KOG0346 RNA helicase [RNA proc 100.0 7E-34 1.5E-38 229.7 14.6 186 1-202 95-283 (569)
15 PRK11634 ATP-dependent RNA hel 100.0 4.1E-33 8.9E-38 243.3 19.6 185 1-202 76-260 (629)
16 PTZ00110 helicase; Provisional 100.0 9.3E-33 2E-37 238.5 19.5 185 1-202 205-392 (545)
17 PRK04837 ATP-dependent RNA hel 100.0 1.2E-32 2.6E-37 232.1 19.5 184 1-202 85-270 (423)
18 KOG0348 ATP-dependent RNA heli 100.0 9.2E-34 2E-38 233.6 11.1 200 1-201 213-439 (708)
19 KOG0335 ATP-dependent RNA heli 100.0 7E-33 1.5E-37 228.6 16.0 183 1-201 154-351 (482)
20 PRK10590 ATP-dependent RNA hel 100.0 2.1E-32 4.5E-37 232.5 19.1 183 1-201 77-259 (456)
21 KOG0329 ATP-dependent RNA heli 100.0 1.4E-33 3E-38 214.6 10.6 182 2-199 113-295 (387)
22 PRK04537 ATP-dependent RNA hel 100.0 4E-32 8.8E-37 235.5 18.8 185 1-202 86-272 (572)
23 PLN00206 DEAD-box ATP-dependen 100.0 2.2E-31 4.8E-36 229.1 20.8 182 1-201 198-381 (518)
24 KOG0327 Translation initiation 100.0 2E-32 4.4E-37 218.0 12.4 182 1-201 96-277 (397)
25 PRK01297 ATP-dependent RNA hel 100.0 3.8E-31 8.2E-36 225.9 20.5 185 1-202 164-350 (475)
26 PRK11192 ATP-dependent RNA hel 100.0 1.7E-30 3.7E-35 219.7 20.4 183 2-202 76-260 (434)
27 KOG0336 ATP-dependent RNA heli 100.0 6.8E-31 1.5E-35 211.2 16.8 183 1-201 296-479 (629)
28 KOG0337 ATP-dependent RNA heli 100.0 1.6E-31 3.5E-36 215.0 12.3 182 2-201 93-275 (529)
29 KOG0341 DEAD-box protein abstr 100.0 2.7E-32 5.7E-37 218.0 7.2 183 1-201 248-435 (610)
30 KOG0340 ATP-dependent RNA heli 100.0 1.5E-30 3.3E-35 205.5 11.8 184 1-201 77-268 (442)
31 KOG0347 RNA helicase [RNA proc 100.0 1.6E-30 3.5E-35 215.1 10.5 182 1-200 265-476 (731)
32 KOG0334 RNA helicase [RNA proc 100.0 1.7E-29 3.6E-34 221.8 13.2 184 1-201 440-627 (997)
33 KOG0350 DEAD-box ATP-dependent 100.0 4.1E-29 8.9E-34 204.8 12.7 189 1-201 217-443 (620)
34 PTZ00424 helicase 45; Provisio 100.0 1.2E-27 2.5E-32 200.5 20.8 183 1-201 98-281 (401)
35 KOG0332 ATP-dependent RNA heli 99.9 4.8E-27 1E-31 186.9 9.8 181 1-201 162-344 (477)
36 TIGR02621 cas3_GSU0051 CRISPR- 99.9 1E-24 2.2E-29 192.6 16.8 177 2-202 64-287 (844)
37 PRK09401 reverse gyrase; Revie 99.9 1.8E-24 3.9E-29 198.9 18.9 174 1-199 125-340 (1176)
38 PRK14701 reverse gyrase; Provi 99.9 6.9E-23 1.5E-27 192.4 17.3 179 1-201 124-344 (1638)
39 TIGR03817 DECH_helic helicase/ 99.9 7.6E-23 1.6E-27 182.1 16.6 177 1-202 83-286 (742)
40 PRK09751 putative ATP-dependen 99.9 1.8E-22 3.9E-27 187.2 18.6 133 1-135 39-187 (1490)
41 TIGR01054 rgy reverse gyrase. 99.9 7.8E-22 1.7E-26 181.7 16.5 175 1-201 123-343 (1171)
42 cd00268 DEADc DEAD-box helicas 99.9 4.3E-21 9.3E-26 146.5 16.1 131 2-135 72-202 (203)
43 KOG0344 ATP-dependent RNA heli 99.9 7.7E-23 1.7E-27 170.9 6.1 184 1-201 211-401 (593)
44 PRK00254 ski2-like helicase; P 99.9 2.4E-21 5.2E-26 172.9 14.7 119 2-128 71-189 (720)
45 KOG0349 Putative DEAD-box RNA 99.9 2.9E-21 6.2E-26 157.0 11.3 185 1-202 288-520 (725)
46 PRK13767 ATP-dependent helicas 99.9 1.2E-20 2.5E-25 171.0 14.6 117 1-119 86-219 (876)
47 TIGR00614 recQ_fam ATP-depende 99.8 3.6E-20 7.7E-25 158.2 15.6 176 1-202 53-241 (470)
48 PRK02362 ski2-like helicase; P 99.8 1.6E-20 3.4E-25 168.1 13.9 119 1-127 69-190 (737)
49 PRK10689 transcription-repair 99.8 6.9E-20 1.5E-24 168.5 17.5 169 1-201 651-823 (1147)
50 PLN03137 ATP-dependent DNA hel 99.8 9.8E-20 2.1E-24 164.1 16.5 177 1-202 502-695 (1195)
51 PF00270 DEAD: DEAD/DEAH box h 99.8 1.3E-19 2.9E-24 134.1 14.3 120 2-123 47-168 (169)
52 TIGR00580 mfd transcription-re 99.8 2.4E-19 5.1E-24 162.0 17.2 171 1-202 502-675 (926)
53 TIGR01389 recQ ATP-dependent D 99.8 2.3E-19 5E-24 157.2 14.9 174 2-202 56-239 (591)
54 COG1204 Superfamily II helicas 99.8 1.7E-19 3.6E-24 160.1 13.0 179 2-202 79-268 (766)
55 PRK11057 ATP-dependent DNA hel 99.8 6.9E-19 1.5E-23 154.3 15.7 175 1-202 67-251 (607)
56 PRK01172 ski2-like helicase; P 99.8 4.1E-19 8.8E-24 157.8 12.2 119 2-128 68-189 (674)
57 PRK10917 ATP-dependent DNA hel 99.8 4.7E-18 1E-22 150.7 18.0 169 1-201 312-485 (681)
58 COG1201 Lhr Lhr-like helicases 99.8 2.1E-18 4.6E-23 152.2 13.8 176 1-202 75-268 (814)
59 PRK11664 ATP-dependent RNA hel 99.8 9.1E-18 2E-22 150.5 16.0 169 1-201 50-226 (812)
60 TIGR01970 DEAH_box_HrpB ATP-de 99.8 1.4E-17 3E-22 149.2 16.7 169 1-201 47-223 (819)
61 PHA02653 RNA helicase NPH-II; 99.8 6E-18 1.3E-22 148.5 13.8 172 1-202 224-410 (675)
62 TIGR00643 recG ATP-dependent D 99.8 5.9E-17 1.3E-21 142.7 17.3 170 1-201 286-462 (630)
63 TIGR03158 cas3_cyano CRISPR-as 99.7 1.5E-16 3.3E-21 131.4 17.5 200 2-202 42-287 (357)
64 TIGR01587 cas3_core CRISPR-ass 99.7 1.5E-17 3.1E-22 137.6 11.3 180 2-202 32-237 (358)
65 COG1205 Distinct helicase fami 99.7 4.8E-16 1E-20 139.9 17.4 183 1-202 117-321 (851)
66 COG1202 Superfamily II helicas 99.7 2.6E-16 5.6E-21 132.2 9.9 176 3-202 265-455 (830)
67 PRK12898 secA preprotein trans 99.6 1.9E-15 4.1E-20 131.5 11.8 179 1-201 146-487 (656)
68 COG0514 RecQ Superfamily II DN 99.6 2.1E-15 4.5E-20 129.2 10.5 175 2-202 60-245 (590)
69 KOG0952 DNA/RNA helicase MER3/ 99.6 5.7E-15 1.2E-19 130.9 10.3 174 2-201 167-363 (1230)
70 PHA02558 uvsW UvsW helicase; P 99.6 5.8E-15 1.2E-19 127.1 9.3 103 1-120 160-262 (501)
71 TIGR00963 secA preprotein tran 99.6 2.5E-14 5.4E-19 125.5 12.0 84 1-89 99-189 (745)
72 smart00487 DEXDc DEAD-like hel 99.6 3.8E-13 8.3E-18 100.9 16.1 136 2-139 57-192 (201)
73 PRK09200 preprotein translocas 99.5 6.1E-14 1.3E-18 124.5 12.7 86 1-89 121-212 (790)
74 TIGR03714 secA2 accessory Sec 99.5 8.5E-14 1.8E-18 122.8 13.5 86 2-89 114-208 (762)
75 COG4581 Superfamily II RNA hel 99.5 8.2E-14 1.8E-18 125.4 13.3 128 2-140 165-295 (1041)
76 KOG0948 Nuclear exosomal RNA h 99.5 1.5E-14 3.3E-19 124.6 8.2 169 2-202 175-398 (1041)
77 KOG0947 Cytoplasmic exosomal R 99.5 4E-14 8.6E-19 124.6 10.4 114 2-130 343-456 (1248)
78 PRK11131 ATP-dependent RNA hel 99.5 2E-13 4.4E-18 125.9 14.0 159 8-202 131-301 (1294)
79 PRK05580 primosome assembly pr 99.5 1.1E-12 2.5E-17 116.4 18.1 113 1-126 192-313 (679)
80 PRK12904 preprotein translocas 99.5 2.9E-13 6.4E-18 120.2 12.7 83 2-89 125-214 (830)
81 TIGR00595 priA primosomal prot 99.5 3.1E-12 6.6E-17 110.1 18.3 112 1-125 27-147 (505)
82 PRK12899 secA preprotein trans 99.5 1.1E-13 2.4E-18 123.3 9.6 83 2-89 138-228 (970)
83 KOG0351 ATP-dependent DNA heli 99.4 4E-12 8.6E-17 114.8 14.9 178 2-202 307-500 (941)
84 PRK13766 Hef nuclease; Provisi 99.4 2.1E-11 4.6E-16 110.3 16.8 115 2-120 61-175 (773)
85 KOG0951 RNA helicase BRR2, DEA 99.4 3.4E-12 7.3E-17 115.2 11.0 175 2-200 367-559 (1674)
86 PRK13104 secA preprotein trans 99.4 4.2E-12 9E-17 113.3 10.2 84 1-89 125-215 (896)
87 COG1111 MPH1 ERCC4-like helica 99.4 5E-11 1.1E-15 99.4 15.6 135 2-140 61-198 (542)
88 cd00046 DEXDc DEAD-like helica 99.3 6.1E-11 1.3E-15 84.0 13.5 112 2-117 33-144 (144)
89 PRK09694 helicase Cas3; Provis 99.2 2.3E-10 5.1E-15 103.4 15.3 126 2-128 334-492 (878)
90 KOG0353 ATP-dependent DNA heli 99.2 1.3E-10 2.9E-15 94.1 11.0 181 1-202 136-332 (695)
91 TIGR01967 DEAH_box_HrpA ATP-de 99.2 1E-09 2.2E-14 102.1 15.3 130 49-202 154-294 (1283)
92 PF06862 DUF1253: Protein of u 99.1 8.3E-09 1.8E-13 86.5 17.0 138 51-196 131-309 (442)
93 TIGR00603 rad25 DNA repair hel 99.1 3.2E-10 6.8E-15 100.3 9.0 106 2-119 301-413 (732)
94 KOG0352 ATP-dependent DNA heli 99.1 2.2E-10 4.7E-15 94.0 6.4 175 1-202 63-270 (641)
95 COG1110 Reverse gyrase [DNA re 99.0 3.3E-09 7.1E-14 95.0 11.7 169 2-196 128-344 (1187)
96 COG1200 RecG RecG-like helicas 99.0 5.1E-08 1.1E-12 84.6 16.6 112 1-124 313-428 (677)
97 COG1061 SSL2 DNA or RNA helica 99.0 2.6E-09 5.7E-14 90.7 8.5 102 2-119 83-185 (442)
98 PRK13107 preprotein translocas 98.9 2.1E-09 4.6E-14 96.1 7.8 83 2-89 126-215 (908)
99 KOG0354 DEAD-box like helicase 98.8 1.5E-08 3.2E-13 89.0 9.2 120 2-126 109-230 (746)
100 COG1197 Mfd Transcription-repa 98.8 2E-07 4.3E-12 85.3 13.8 128 1-140 645-775 (1139)
101 PF04851 ResIII: Type III rest 98.6 2.9E-07 6.3E-12 68.5 9.0 110 2-118 53-183 (184)
102 KOG0950 DNA polymerase theta/e 98.5 3.1E-07 6.8E-12 82.0 6.8 88 28-120 297-390 (1008)
103 COG1198 PriA Primosomal protei 98.5 3E-06 6.5E-11 75.4 12.7 168 1-198 247-431 (730)
104 COG4098 comFA Superfamily II D 98.5 3.1E-06 6.6E-11 68.3 11.1 163 3-201 148-319 (441)
105 KOG0949 Predicted helicase, DE 98.4 4.7E-07 1E-11 81.2 6.3 114 2-120 559-674 (1330)
106 PRK12906 secA preprotein trans 98.4 1.4E-06 3.1E-11 78.0 9.1 85 1-89 123-213 (796)
107 PF14617 CMS1: U3-containing 9 98.4 6.6E-07 1.4E-11 70.1 6.2 81 2-85 129-210 (252)
108 PRK14873 primosome assembly pr 98.3 4.1E-05 8.9E-10 68.2 15.4 114 1-126 190-312 (665)
109 PRK04914 ATP-dependent helicas 98.3 1.1E-05 2.3E-10 74.3 12.0 111 2-118 202-316 (956)
110 TIGR00348 hsdR type I site-spe 98.2 1.1E-05 2.3E-10 72.3 10.2 106 2-118 296-403 (667)
111 PF00176 SNF2_N: SNF2 family N 98.2 4.2E-06 9.1E-11 67.2 6.7 107 2-117 61-172 (299)
112 PRK11448 hsdR type I restricti 98.2 7.1E-06 1.5E-10 76.8 8.2 113 2-120 466-597 (1123)
113 PF07652 Flavi_DEAD: Flaviviru 98.1 1.7E-05 3.7E-10 56.7 7.8 104 2-122 36-141 (148)
114 COG1203 CRISPR-associated heli 98.1 1.2E-05 2.7E-10 72.6 8.2 136 2-138 249-401 (733)
115 KOG0951 RNA helicase BRR2, DEA 98.1 8.6E-05 1.9E-09 68.7 13.0 169 2-201 1189-1373(1674)
116 KOG2340 Uncharacterized conser 98.0 1.1E-05 2.3E-10 68.5 6.3 130 2-132 296-494 (698)
117 KOG0385 Chromatin remodeling c 98.0 4.3E-05 9.4E-10 67.4 10.2 112 3-123 221-334 (971)
118 PRK13103 secA preprotein trans 98.0 3.1E-05 6.8E-10 70.1 8.1 83 1-89 125-215 (913)
119 PLN03142 Probable chromatin-re 97.9 0.00013 2.9E-09 67.6 12.0 107 2-118 222-330 (1033)
120 COG4096 HsdR Type I site-speci 97.9 9E-05 2E-09 66.1 9.6 101 2-119 218-322 (875)
121 KOG0389 SNF2 family DNA-depend 97.8 0.00031 6.7E-09 62.4 10.5 112 3-126 452-572 (941)
122 COG1643 HrpA HrpA-like helicas 97.7 0.0038 8.3E-08 57.0 16.6 127 50-199 138-271 (845)
123 KOG4150 Predicted ATP-dependen 97.7 0.0001 2.2E-09 63.4 6.0 181 2-201 334-539 (1034)
124 PF07517 SecA_DEAD: SecA DEAD- 97.6 0.00066 1.4E-08 53.9 9.8 84 2-89 121-210 (266)
125 PRK12326 preprotein translocas 97.6 0.00024 5.1E-09 63.2 7.2 84 2-89 122-211 (764)
126 TIGR03117 cas_csf4 CRISPR-asso 97.6 0.00074 1.6E-08 59.8 10.2 40 50-90 181-220 (636)
127 PRK07246 bifunctional ATP-depe 97.4 0.0016 3.5E-08 59.7 10.5 37 1-38 293-330 (820)
128 CHL00122 secA preprotein trans 97.4 0.00045 9.7E-09 62.5 6.7 84 2-89 120-209 (870)
129 KOG0387 Transcription-coupled 97.3 0.0011 2.4E-08 59.0 8.4 115 2-125 258-384 (923)
130 KOG1123 RNA polymerase II tran 97.3 0.0017 3.6E-08 55.4 8.5 101 2-120 348-461 (776)
131 PRK12902 secA preprotein trans 97.3 0.00098 2.1E-08 60.6 7.6 84 2-89 129-218 (939)
132 KOG0952 DNA/RNA helicase MER3/ 97.1 0.0004 8.6E-09 63.4 3.1 120 2-128 976-1103(1230)
133 KOG0922 DEAH-box RNA helicase 97.0 0.012 2.6E-07 51.7 11.2 127 51-201 140-272 (674)
134 PF02399 Herpes_ori_bp: Origin 96.9 0.028 6E-07 50.9 12.8 117 2-131 81-204 (824)
135 KOG0390 DNA repair protein, SN 96.8 0.011 2.3E-07 53.4 9.3 117 2-126 301-424 (776)
136 TIGR01407 dinG_rel DnaQ family 96.6 0.018 3.8E-07 53.4 10.2 37 2-38 295-333 (850)
137 KOG0392 SNF2 family DNA-depend 96.5 0.015 3.1E-07 54.5 8.6 111 2-125 1034-1147(1549)
138 PRK10689 transcription-repair 96.4 0.018 3.9E-07 54.8 9.0 78 1-88 811-891 (1147)
139 TIGR00580 mfd transcription-re 96.3 0.024 5.1E-07 52.8 8.8 78 1-88 662-742 (926)
140 TIGR02562 cas3_yersinia CRISPR 96.3 0.0065 1.4E-07 56.3 5.1 71 52-123 563-640 (1110)
141 KOG0391 SNF2 family DNA-depend 96.3 0.013 2.9E-07 54.7 7.0 108 3-120 669-779 (1958)
142 KOG4439 RNA polymerase II tran 96.2 0.0064 1.4E-07 53.8 4.5 113 2-120 386-505 (901)
143 COG0610 Type I site-specific r 95.9 0.057 1.2E-06 50.6 9.5 108 2-118 306-414 (962)
144 KOG1002 Nucleotide excision re 95.9 0.035 7.7E-07 47.5 7.3 107 2-117 234-354 (791)
145 PRK04537 ATP-dependent RNA hel 95.9 0.062 1.3E-06 47.6 9.2 72 1-84 259-333 (572)
146 PRK04837 ATP-dependent RNA hel 95.9 0.045 9.7E-07 46.5 8.1 71 2-84 258-331 (423)
147 KOG0384 Chromodomain-helicase 95.9 0.052 1.1E-06 51.0 8.8 114 3-126 424-545 (1373)
148 TIGR00631 uvrb excinuclease AB 95.9 0.19 4.2E-06 45.2 12.1 113 2-126 445-562 (655)
149 COG1197 Mfd Transcription-repa 95.7 0.12 2.5E-06 48.7 10.3 104 1-118 805-911 (1139)
150 TIGR00596 rad1 DNA repair prot 95.6 0.048 1E-06 50.0 7.6 67 51-119 7-74 (814)
151 TIGR00643 recG ATP-dependent D 95.5 0.15 3.3E-06 45.7 10.2 81 1-88 450-538 (630)
152 PRK10917 ATP-dependent DNA hel 95.4 0.17 3.7E-06 45.8 10.1 81 1-88 473-561 (681)
153 PRK10590 ATP-dependent RNA hel 95.3 0.13 2.8E-06 44.2 9.0 69 2-82 248-319 (456)
154 PRK11192 ATP-dependent RNA hel 95.3 0.088 1.9E-06 44.8 7.9 69 2-82 248-319 (434)
155 KOG3089 Predicted DEAD-box-con 95.3 0.037 8E-07 42.3 4.8 43 41-84 186-228 (271)
156 KOG0925 mRNA splicing factor A 95.3 0.12 2.6E-06 44.4 8.2 110 71-203 154-269 (699)
157 KOG0920 ATP-dependent RNA heli 95.2 0.29 6.2E-06 45.4 10.9 81 51-137 264-346 (924)
158 COG0513 SrmB Superfamily II DN 95.1 0.14 3.1E-06 44.7 8.7 70 1-82 275-347 (513)
159 PRK11776 ATP-dependent RNA hel 95.1 0.11 2.4E-06 44.6 7.9 72 2-85 245-319 (460)
160 TIGR00614 recQ_fam ATP-depende 95.1 0.15 3.3E-06 44.0 8.6 72 2-85 229-303 (470)
161 PRK12903 secA preprotein trans 95.0 0.065 1.4E-06 49.1 6.4 84 2-89 122-211 (925)
162 PRK11634 ATP-dependent RNA hel 94.8 0.18 3.9E-06 45.2 8.6 70 1-82 247-319 (629)
163 PTZ00110 helicase; Provisional 94.8 0.18 3.9E-06 44.4 8.6 69 2-82 380-451 (545)
164 KOG0923 mRNA splicing factor A 94.8 0.42 9E-06 42.7 10.4 120 52-195 356-481 (902)
165 KOG0333 U5 snRNP-like RNA heli 94.8 0.16 3.5E-06 43.9 7.7 68 2-81 520-590 (673)
166 PF13872 AAA_34: P-loop contai 94.8 0.094 2E-06 42.3 6.0 112 2-124 94-227 (303)
167 PRK01297 ATP-dependent RNA hel 94.4 0.25 5.4E-06 42.7 8.3 71 1-83 337-410 (475)
168 PRK11057 ATP-dependent DNA hel 94.4 0.25 5.3E-06 44.2 8.4 69 2-82 239-310 (607)
169 COG0556 UvrB Helicase subunit 94.4 0.64 1.4E-05 40.5 10.3 110 2-126 449-566 (663)
170 TIGR01054 rgy reverse gyrase. 94.3 0.21 4.5E-06 47.9 8.2 73 1-82 328-404 (1171)
171 KOG1001 Helicase-like transcri 94.3 0.11 2.3E-06 46.8 5.8 110 2-126 192-302 (674)
172 PLN00206 DEAD-box ATP-dependen 94.3 0.33 7.1E-06 42.5 8.7 71 2-83 370-443 (518)
173 KOG1000 Chromatin remodeling p 94.2 0.25 5.3E-06 42.6 7.5 104 3-117 245-348 (689)
174 PTZ00424 helicase 45; Provisio 94.0 0.29 6.3E-06 41.1 7.8 70 2-83 270-342 (401)
175 TIGR01389 recQ ATP-dependent D 93.9 0.39 8.4E-06 42.7 8.7 69 2-82 227-298 (591)
176 PRK09401 reverse gyrase; Revie 93.9 0.15 3.4E-06 48.8 6.5 72 1-82 330-405 (1176)
177 KOG0388 SNF2 family DNA-depend 93.8 0.37 8.1E-06 43.4 8.0 104 3-119 621-735 (1185)
178 PRK11664 ATP-dependent RNA hel 93.7 0.41 8.9E-06 44.2 8.6 71 2-81 215-288 (812)
179 PRK05580 primosome assembly pr 93.7 1.3 2.8E-05 40.2 11.7 71 10-90 437-512 (679)
180 PRK05298 excinuclease ABC subu 93.7 2.4 5.2E-05 38.3 13.3 75 2-88 449-526 (652)
181 PRK13767 ATP-dependent helicas 93.6 0.57 1.2E-05 43.8 9.4 75 2-83 287-365 (876)
182 COG4889 Predicted helicase [Ge 93.5 0.4 8.8E-06 44.2 7.8 85 2-89 209-317 (1518)
183 PRK12900 secA preprotein trans 93.3 0.15 3.3E-06 47.4 5.1 83 3-89 183-271 (1025)
184 TIGR01970 DEAH_box_HrpB ATP-de 93.3 0.54 1.2E-05 43.5 8.6 72 2-82 212-286 (819)
185 PRK05642 DNA replication initi 93.2 1.1 2.3E-05 35.0 9.1 89 30-119 46-141 (234)
186 KOG0331 ATP-dependent RNA heli 93.1 0.49 1.1E-05 41.1 7.6 69 2-82 344-415 (519)
187 cd00079 HELICc Helicase superf 92.8 1.3 2.9E-05 30.2 8.5 73 2-86 31-106 (131)
188 PF09848 DUF2075: Uncharacteri 92.7 0.54 1.2E-05 39.0 7.3 100 28-128 31-149 (352)
189 COG0553 HepA Superfamily II DN 92.7 0.57 1.2E-05 43.2 8.1 115 2-123 393-517 (866)
190 PHA02653 RNA helicase NPH-II; 92.7 0.54 1.2E-05 42.5 7.6 70 2-81 398-469 (675)
191 KOG0328 Predicted ATP-dependen 92.3 0.87 1.9E-05 36.6 7.4 69 1-81 268-339 (400)
192 PRK12422 chromosomal replicati 92.2 2.6 5.6E-05 36.3 10.9 121 4-124 114-252 (445)
193 TIGR00595 priA primosomal prot 91.9 3.1 6.6E-05 36.5 11.2 68 13-90 272-344 (505)
194 PF02463 SMC_N: RecF/RecN/SMC 91.9 0.23 4.9E-06 38.1 3.8 41 75-115 157-197 (220)
195 KOG0386 Chromatin remodeling c 91.8 0.22 4.7E-06 46.2 4.0 106 3-117 448-554 (1157)
196 PF00308 Bac_DnaA: Bacterial d 91.7 1.9 4.1E-05 33.3 8.7 116 4-121 11-144 (219)
197 PLN03137 ATP-dependent DNA hel 91.7 0.97 2.1E-05 43.1 8.1 69 2-82 683-754 (1195)
198 TIGR03817 DECH_helic helicase/ 91.6 1.1 2.5E-05 41.0 8.5 77 1-84 273-355 (742)
199 PRK15483 type III restriction- 91.4 1.2 2.7E-05 41.7 8.5 114 2-119 92-240 (986)
200 PRK09694 helicase Cas3; Provis 91.2 1.4 3E-05 41.2 8.7 74 2-85 563-647 (878)
201 TIGR03158 cas3_cyano CRISPR-as 91.2 1.7 3.7E-05 36.1 8.6 68 2-83 275-342 (357)
202 KOG0344 ATP-dependent RNA heli 91.0 3.5 7.6E-05 36.3 10.2 74 2-86 390-466 (593)
203 PHA02544 44 clamp loader, smal 90.8 5.6 0.00012 32.2 11.2 41 75-115 99-139 (316)
204 PF13401 AAA_22: AAA domain; P 90.8 0.25 5.3E-06 34.3 2.8 36 77-115 88-124 (131)
205 KOG0332 ATP-dependent RNA heli 90.8 1.7 3.6E-05 36.4 7.8 116 1-130 332-457 (477)
206 TIGR03420 DnaA_homol_Hda DnaA 90.7 4.2 9.1E-05 31.0 9.9 103 14-118 24-133 (226)
207 COG1200 RecG RecG-like helicas 90.5 0.75 1.6E-05 41.1 5.9 81 1-88 475-563 (677)
208 KOG0924 mRNA splicing factor A 90.4 6.3 0.00014 35.8 11.4 77 51-133 445-524 (1042)
209 COG1198 PriA Primosomal protei 90.3 4.2 9.1E-05 37.2 10.6 98 12-119 493-605 (730)
210 PRK14701 reverse gyrase; Provi 90.3 0.73 1.6E-05 45.8 6.3 69 1-82 332-407 (1638)
211 TIGR01587 cas3_core CRISPR-ass 90.1 1.7 3.7E-05 35.9 7.7 72 2-84 225-303 (358)
212 PRK12901 secA preprotein trans 90.1 0.54 1.2E-05 44.1 4.9 83 3-89 214-303 (1112)
213 PRK14087 dnaA chromosomal repl 90.0 3 6.4E-05 36.0 9.2 115 4-121 118-253 (450)
214 PRK08903 DnaA regulatory inact 89.7 7.7 0.00017 29.8 10.6 85 29-119 42-133 (227)
215 PRK14088 dnaA chromosomal repl 89.3 7.3 0.00016 33.5 11.0 120 4-126 108-246 (440)
216 PF06733 DEAD_2: DEAD_2; Inte 88.9 0.28 6.2E-06 36.3 2.0 41 50-91 118-160 (174)
217 PF05621 TniB: Bacterial TniB 88.8 0.58 1.3E-05 37.9 3.8 40 74-113 143-184 (302)
218 KOG0989 Replication factor C, 88.8 1.2 2.7E-05 36.1 5.5 55 74-129 127-184 (346)
219 KOG0926 DEAH-box RNA helicase 88.7 1.1 2.3E-05 41.2 5.6 129 50-200 348-494 (1172)
220 PRK04914 ATP-dependent helicas 88.3 3.2 6.8E-05 39.2 8.6 70 2-82 496-570 (956)
221 PHA02558 uvsW UvsW helicase; P 88.1 2.8 6.1E-05 36.6 7.9 71 2-83 347-420 (501)
222 TIGR00362 DnaA chromosomal rep 88.1 4.4 9.6E-05 34.2 8.9 115 5-122 114-247 (405)
223 COG4098 comFA Superfamily II D 87.9 4.8 0.0001 33.4 8.4 107 2-121 308-420 (441)
224 PRK05986 cob(I)alamin adenolsy 87.8 9.6 0.00021 28.9 9.5 54 74-127 113-168 (191)
225 PRK06893 DNA replication initi 87.8 1.4 2.9E-05 34.3 5.2 90 30-120 40-137 (229)
226 KOG2170 ATPase of the AAA+ sup 87.7 0.73 1.6E-05 37.4 3.6 57 73-130 175-238 (344)
227 PRK00149 dnaA chromosomal repl 87.7 4.1 8.8E-05 35.0 8.5 94 29-122 148-259 (450)
228 TIGR00708 cobA cob(I)alamin ad 87.5 1.5 3.3E-05 32.6 5.0 54 74-127 95-150 (173)
229 cd00561 CobA_CobO_BtuR ATP:cor 87.4 1.6 3.4E-05 32.0 5.0 55 73-127 92-148 (159)
230 COG0593 DnaA ATPase involved i 87.0 8.4 0.00018 32.8 9.7 117 3-122 89-223 (408)
231 PRK08084 DNA replication initi 87.0 6.2 0.00014 30.7 8.5 90 28-119 44-142 (235)
232 PRK11131 ATP-dependent RNA hel 86.8 3.4 7.3E-05 40.2 8.0 71 2-81 289-360 (1294)
233 PRK14086 dnaA chromosomal repl 86.7 5.9 0.00013 35.5 9.0 93 29-121 314-424 (617)
234 PRK09751 putative ATP-dependen 86.4 5.3 0.00011 39.6 9.1 75 1-82 246-351 (1490)
235 smart00488 DEXDc2 DEAD-like he 86.2 0.63 1.4E-05 37.6 2.6 40 50-90 210-250 (289)
236 smart00489 DEXDc3 DEAD-like he 86.2 0.63 1.4E-05 37.6 2.6 40 50-90 210-250 (289)
237 PRK07413 hypothetical protein; 86.1 10 0.00022 31.9 9.7 54 74-127 123-178 (382)
238 TIGR01967 DEAH_box_HrpA ATP-de 86.0 4.3 9.4E-05 39.5 8.3 71 2-81 282-353 (1283)
239 PF05127 Helicase_RecD: Helica 86.0 0.8 1.7E-05 34.2 2.9 96 2-118 29-124 (177)
240 PF00271 Helicase_C: Helicase 85.9 3.2 6.9E-05 25.8 5.4 51 28-85 7-60 (78)
241 PF03354 Terminase_1: Phage Te 85.9 1.6 3.4E-05 37.9 5.1 104 2-115 57-161 (477)
242 COG0497 RecN ATPase involved i 85.8 3.6 7.9E-05 36.2 7.1 84 76-183 453-536 (557)
243 PF13086 AAA_11: AAA domain; P 84.9 3.2 6.9E-05 31.5 5.9 36 50-90 169-206 (236)
244 PRK12900 secA preprotein trans 84.6 0.46 1E-05 44.4 1.2 76 109-201 535-612 (1025)
245 PRK01172 ski2-like helicase; P 84.5 8.2 0.00018 35.0 9.1 77 1-85 238-337 (674)
246 PRK07414 cob(I)yrinic acid a,c 84.5 2.6 5.7E-05 31.5 5.0 53 74-126 113-167 (178)
247 COG1435 Tdk Thymidine kinase [ 84.4 8.5 0.00018 29.3 7.7 74 28-104 32-109 (201)
248 PRK06835 DNA replication prote 84.3 10 0.00022 31.3 8.9 110 9-119 162-290 (329)
249 PRK08727 hypothetical protein; 84.3 1.9 4.1E-05 33.6 4.5 90 30-120 42-139 (233)
250 PF02572 CobA_CobO_BtuR: ATP:c 83.8 3.1 6.7E-05 30.9 5.1 56 72-127 92-149 (172)
251 PRK08074 bifunctional ATP-depe 83.5 1.8 4E-05 40.7 4.7 40 50-90 430-469 (928)
252 COG0653 SecA Preprotein transl 83.2 2.4 5.2E-05 39.0 5.1 83 3-89 125-213 (822)
253 PF12340 DUF3638: Protein of u 83.0 4.2 9.2E-05 31.7 5.7 89 2-91 73-187 (229)
254 KOG0964 Structural maintenance 82.5 1.2 2.5E-05 41.4 2.9 54 75-130 1118-1171(1200)
255 PRK04195 replication factor C 82.2 25 0.00055 30.5 10.9 80 10-90 21-112 (482)
256 COG1110 Reverse gyrase [DNA re 81.9 3.8 8.3E-05 38.6 5.8 74 2-85 338-415 (1187)
257 PRK13766 Hef nuclease; Provisi 81.8 9.2 0.0002 35.2 8.5 73 2-86 368-451 (773)
258 PF13173 AAA_14: AAA domain 81.8 3.7 7.9E-05 28.5 4.7 41 76-119 61-101 (128)
259 KOG0354 DEAD-box like helicase 81.8 7.8 0.00017 35.4 7.6 73 1-82 415-498 (746)
260 KOG0298 DEAD box-containing he 81.6 5.3 0.00012 38.5 6.7 114 2-123 423-556 (1394)
261 TIGR02621 cas3_GSU0051 CRISPR- 81.5 8.6 0.00019 35.8 8.0 70 1-85 274-362 (844)
262 PRK06620 hypothetical protein; 81.5 22 0.00047 27.3 9.7 106 3-120 18-126 (214)
263 COG2109 BtuR ATP:corrinoid ade 81.4 5.5 0.00012 30.1 5.6 54 75-128 121-176 (198)
264 KOG1015 Transcription regulato 81.2 17 0.00037 34.5 9.6 117 2-123 731-866 (1567)
265 COG3587 Restriction endonuclea 81.1 9.8 0.00021 35.3 8.0 113 3-122 108-247 (985)
266 PRK11747 dinG ATP-dependent DN 81.0 1.8 3.9E-05 39.5 3.5 41 50-90 218-260 (697)
267 KOG0327 Translation initiation 79.7 8.5 0.00018 32.2 6.7 70 1-82 265-337 (397)
268 COG0514 RecQ Superfamily II DN 79.5 9.4 0.0002 34.0 7.3 81 2-87 233-339 (590)
269 PF02302 PTS_IIB: PTS system, 79.0 7.2 0.00016 25.1 5.2 62 2-68 2-65 (90)
270 PF13604 AAA_30: AAA domain; P 79.0 25 0.00055 26.5 10.0 39 74-116 91-130 (196)
271 COG1203 CRISPR-associated heli 78.4 7.3 0.00016 35.8 6.6 53 2-59 443-502 (733)
272 COG1196 Smc Chromosome segrega 78.1 2.7 5.9E-05 40.6 3.9 67 49-115 1047-1127(1163)
273 PF00004 AAA: ATPase family as 77.9 9.5 0.00021 25.9 5.8 16 77-92 59-74 (132)
274 COG0556 UvrB Helicase subunit 77.4 4.2 9.1E-05 35.7 4.4 24 2-25 60-83 (663)
275 KOG1556 26S proteasome regulat 77.0 21 0.00046 28.1 7.7 61 80-140 57-128 (309)
276 KOG0341 DEAD-box protein abstr 76.7 9.5 0.0002 32.3 6.1 84 2-105 424-510 (610)
277 TIGR00631 uvrb excinuclease AB 76.3 12 0.00027 33.9 7.3 23 2-24 57-79 (655)
278 PF13177 DNA_pol3_delta2: DNA 75.9 5.2 0.00011 29.2 4.2 67 50-117 66-142 (162)
279 KOG0335 ATP-dependent RNA heli 75.9 10 0.00023 32.8 6.4 71 2-84 340-413 (482)
280 COG1199 DinG Rad3-related DNA 75.0 2.9 6.4E-05 37.6 3.2 40 50-90 193-234 (654)
281 KOG0991 Replication factor C, 75.0 6.3 0.00014 31.1 4.5 42 74-116 111-152 (333)
282 smart00490 HELICc helicase sup 74.1 17 0.00037 22.1 7.5 51 28-85 11-64 (82)
283 PRK07764 DNA polymerase III su 74.0 6.1 0.00013 36.8 4.9 39 75-114 119-157 (824)
284 PF13514 AAA_27: AAA domain 73.9 6.4 0.00014 38.0 5.2 55 79-135 1054-1108(1111)
285 PRK06526 transposase; Provisio 73.9 5 0.00011 31.8 3.8 71 49-119 124-203 (254)
286 cd00133 PTS_IIB PTS_IIB: subun 73.8 18 0.00039 22.2 6.5 53 2-60 2-55 (84)
287 PRK07003 DNA polymerase III su 73.7 4.8 0.0001 37.1 4.0 39 75-114 118-156 (830)
288 KOG0349 Putative DEAD-box RNA 73.1 19 0.0004 31.1 7.0 72 1-81 507-581 (725)
289 PRK02362 ski2-like helicase; P 72.8 21 0.00045 32.9 8.1 75 1-82 245-353 (737)
290 PF05872 DUF853: Bacterial pro 72.6 12 0.00025 32.4 5.8 35 73-107 251-289 (502)
291 PLN03025 replication factor C 72.5 7.2 0.00016 31.8 4.6 39 75-114 98-136 (319)
292 KOG0338 ATP-dependent RNA heli 72.1 14 0.0003 32.5 6.2 71 2-84 429-502 (691)
293 PRK12323 DNA polymerase III su 71.9 5 0.00011 36.3 3.7 41 74-115 122-162 (700)
294 PRK13104 secA preprotein trans 71.9 2.1 4.5E-05 39.9 1.4 76 109-201 381-458 (896)
295 PRK00254 ski2-like helicase; P 71.8 23 0.0005 32.5 8.1 47 30-83 297-346 (720)
296 COG1111 MPH1 ERCC4-like helica 71.5 30 0.00065 30.3 8.0 73 2-85 369-452 (542)
297 KOG0334 RNA helicase [RNA proc 71.3 14 0.00031 34.8 6.5 73 2-86 616-691 (997)
298 PRK12898 secA preprotein trans 71.0 19 0.00041 32.7 7.1 65 2-78 476-544 (656)
299 PRK07940 DNA polymerase III su 70.2 23 0.00049 30.1 7.2 65 51-116 84-156 (394)
300 PF13304 AAA_21: AAA domain; P 70.0 5.6 0.00012 30.2 3.3 38 78-115 259-297 (303)
301 COG1201 Lhr Lhr-like helicases 69.5 27 0.00059 32.5 7.9 53 2-58 256-311 (814)
302 PRK14958 DNA polymerase III su 68.9 7 0.00015 34.3 4.0 39 75-114 118-156 (509)
303 KOG0933 Structural maintenance 68.8 5.9 0.00013 37.2 3.5 79 28-115 1065-1143(1174)
304 KOG0330 ATP-dependent RNA heli 68.7 22 0.00048 30.1 6.5 69 2-82 303-374 (476)
305 TIGR00348 hsdR type I site-spe 68.6 26 0.00056 31.9 7.6 24 2-25 517-540 (667)
306 KOG0340 ATP-dependent RNA heli 68.4 35 0.00075 28.7 7.5 68 2-81 257-327 (442)
307 PRK10869 recombination and rep 68.4 6.6 0.00014 34.8 3.7 85 75-183 451-535 (553)
308 TIGR00604 rad3 DNA repair heli 68.1 3.9 8.4E-05 37.4 2.3 39 51-90 195-234 (705)
309 KOG0990 Replication factor C, 68.1 7.9 0.00017 31.8 3.8 37 76-113 131-167 (360)
310 cd01120 RecA-like_NTPases RecA 68.0 13 0.00028 26.2 4.7 46 74-119 83-138 (165)
311 KOG2228 Origin recognition com 67.8 25 0.00055 29.3 6.6 66 61-127 123-189 (408)
312 TIGR00678 holB DNA polymerase 66.2 11 0.00024 28.0 4.1 39 74-113 94-132 (188)
313 PRK07413 hypothetical protein; 65.8 15 0.00033 30.9 5.1 53 75-127 304-359 (382)
314 PRK08116 hypothetical protein; 65.6 67 0.0015 25.6 11.3 71 50-121 141-225 (268)
315 PHA02533 17 large terminase pr 65.6 25 0.00055 31.1 6.8 103 2-117 107-210 (534)
316 TIGR00634 recN DNA repair prot 65.3 7.6 0.00016 34.5 3.5 84 76-183 462-545 (563)
317 PF05707 Zot: Zonular occluden 65.2 7.7 0.00017 29.1 3.1 54 76-129 79-137 (193)
318 PRK10875 recD exonuclease V su 64.7 44 0.00096 30.2 8.1 39 74-116 263-301 (615)
319 PRK05298 excinuclease ABC subu 64.4 32 0.00069 31.3 7.3 23 2-24 60-82 (652)
320 PRK07952 DNA replication prote 64.4 69 0.0015 25.2 9.2 107 15-121 84-209 (244)
321 PRK09200 preprotein translocas 64.3 30 0.00066 32.2 7.2 53 2-59 431-484 (790)
322 PRK08181 transposase; Validate 64.2 21 0.00045 28.6 5.5 70 49-119 132-210 (269)
323 PRK09112 DNA polymerase III su 63.7 11 0.00024 31.3 4.1 39 75-114 140-178 (351)
324 cd00009 AAA The AAA+ (ATPases 63.4 15 0.00032 25.1 4.2 30 74-104 82-111 (151)
325 PRK12402 replication factor C 63.1 12 0.00026 30.4 4.2 40 75-115 124-163 (337)
326 PF01182 Glucosamine_iso: Gluc 63.1 18 0.0004 27.3 4.8 119 9-147 3-138 (199)
327 cd06353 PBP1_BmpA_Med_like Per 62.9 40 0.00087 26.5 6.9 67 16-84 20-89 (258)
328 TIGR03714 secA2 accessory Sec 62.4 36 0.00077 31.6 7.2 53 2-59 427-480 (762)
329 PF15586 Imm47: Immunity prote 61.8 9.3 0.0002 26.4 2.7 50 50-104 43-92 (116)
330 cd05566 PTS_IIB_galactitol PTS 61.8 34 0.00073 21.9 5.4 54 2-60 3-57 (89)
331 PRK13107 preprotein translocas 61.8 4.3 9.2E-05 37.9 1.3 76 109-201 386-463 (908)
332 PRK00440 rfc replication facto 61.6 28 0.0006 28.0 6.0 39 75-114 101-139 (319)
333 PRK14974 cell division protein 61.5 74 0.0016 26.4 8.4 55 75-129 221-276 (336)
334 COG0470 HolB ATPase involved i 61.3 24 0.00051 28.4 5.5 63 51-114 73-146 (325)
335 cd05563 PTS_IIB_ascorbate PTS_ 61.2 35 0.00075 21.6 5.3 52 2-60 2-54 (86)
336 cd03239 ABC_SMC_head The struc 60.8 11 0.00024 28.0 3.2 42 74-115 114-156 (178)
337 PRK14949 DNA polymerase III su 60.5 15 0.00033 34.6 4.6 43 75-119 118-160 (944)
338 PRK08451 DNA polymerase III su 60.3 12 0.00027 33.0 3.8 40 74-114 115-154 (535)
339 COG4555 NatA ABC-type Na+ tran 60.1 19 0.00042 27.8 4.4 54 74-127 149-202 (245)
340 PRK10536 hypothetical protein; 60.0 14 0.0003 29.4 3.8 35 78-116 178-212 (262)
341 PRK09111 DNA polymerase III su 59.9 42 0.00091 30.2 7.1 40 74-114 130-169 (598)
342 PF02608 Bmp: Basic membrane p 59.8 59 0.0013 26.3 7.6 70 15-85 21-94 (306)
343 PRK04132 replication factor C 59.4 21 0.00046 33.4 5.3 37 76-113 630-666 (846)
344 TIGR01198 pgl 6-phosphoglucono 59.4 42 0.00092 26.1 6.4 123 58-183 39-202 (233)
345 PTZ00112 origin recognition co 59.2 1.3E+02 0.0028 29.0 10.1 41 75-116 868-909 (1164)
346 PHA03368 DNA packaging termina 59.0 12 0.00027 33.9 3.6 102 2-119 287-392 (738)
347 PRK00411 cdc6 cell division co 58.4 18 0.0004 30.2 4.5 27 77-103 139-165 (394)
348 PRK08769 DNA polymerase III su 58.4 47 0.001 27.3 6.7 41 74-115 111-151 (319)
349 PF01637 Arch_ATPase: Archaeal 57.4 23 0.0005 26.6 4.6 40 78-117 120-165 (234)
350 COG3505 VirD4 Type IV secretor 57.3 1.5E+02 0.0032 26.8 10.8 105 28-137 343-493 (596)
351 PRK14960 DNA polymerase III su 56.9 18 0.00039 33.0 4.3 39 75-114 117-155 (702)
352 PRK08058 DNA polymerase III su 56.9 49 0.0011 27.2 6.7 63 51-114 77-147 (329)
353 PRK06921 hypothetical protein; 56.8 99 0.0021 24.6 8.8 89 29-119 117-226 (266)
354 PRK05707 DNA polymerase III su 56.8 48 0.001 27.3 6.6 64 50-114 70-143 (328)
355 cd01400 6PGL 6PGL: 6-Phosphogl 56.6 41 0.00089 25.8 5.9 117 9-147 5-135 (219)
356 PRK08691 DNA polymerase III su 56.1 17 0.00037 33.2 4.0 40 74-114 117-156 (709)
357 PRK07994 DNA polymerase III su 56.0 16 0.00034 33.2 3.8 38 75-113 118-155 (647)
358 PRK12377 putative replication 55.9 1E+02 0.0022 24.4 10.3 86 30-115 102-204 (248)
359 PRK09087 hypothetical protein; 55.8 94 0.002 24.0 8.2 103 4-119 24-129 (226)
360 KOG0741 AAA+-type ATPase [Post 55.8 1.6E+02 0.0034 26.6 9.6 121 17-160 246-402 (744)
361 PF12846 AAA_10: AAA-like doma 55.7 19 0.00042 28.4 4.1 39 75-113 219-258 (304)
362 PRK14952 DNA polymerase III su 55.7 21 0.00045 32.0 4.5 43 74-118 116-158 (584)
363 PRK07471 DNA polymerase III su 55.6 20 0.00044 30.0 4.2 42 74-116 139-180 (365)
364 TIGR02169 SMC_prok_A chromosom 55.2 15 0.00032 35.4 3.8 42 75-116 1095-1136(1164)
365 TIGR01407 dinG_rel DnaQ family 55.0 56 0.0012 30.7 7.4 73 2-84 677-753 (850)
366 TIGR01447 recD exodeoxyribonuc 54.8 19 0.0004 32.3 4.1 38 75-116 258-295 (586)
367 PRK14961 DNA polymerase III su 54.5 17 0.00037 30.3 3.7 40 74-114 117-156 (363)
368 PRK11034 clpA ATP-dependent Cl 54.5 19 0.00042 33.3 4.3 45 77-121 279-327 (758)
369 PRK14957 DNA polymerase III su 54.4 20 0.00044 31.8 4.2 40 74-114 117-156 (546)
370 cd03278 ABC_SMC_barmotin Barmo 54.4 22 0.00047 26.8 3.9 40 75-114 134-173 (197)
371 PRK14956 DNA polymerase III su 54.3 20 0.00044 31.2 4.1 19 75-93 120-138 (484)
372 KOG4284 DEAD box protein [Tran 54.3 20 0.00043 32.6 4.0 47 28-81 296-345 (980)
373 KOG0018 Structural maintenance 53.8 15 0.00033 34.8 3.4 39 75-115 1072-1110(1141)
374 PRK14964 DNA polymerase III su 53.8 31 0.00067 30.2 5.2 63 51-114 84-153 (491)
375 KOG0996 Structural maintenance 53.6 13 0.00029 35.6 3.0 79 50-130 1177-1269(1293)
376 PRK13342 recombination factor 53.6 34 0.00074 29.0 5.4 38 76-118 92-129 (413)
377 PF02562 PhoH: PhoH-like prote 53.5 24 0.00052 27.0 4.0 35 78-116 121-155 (205)
378 COG4626 Phage terminase-like p 53.4 51 0.0011 29.2 6.3 99 3-115 122-223 (546)
379 PRK04296 thymidine kinase; Pro 53.3 16 0.00034 27.4 3.0 52 56-115 62-113 (190)
380 TIGR02881 spore_V_K stage V sp 53.2 31 0.00068 27.1 4.8 28 78-105 107-138 (261)
381 KOG1133 Helicase of the DEAD s 53.1 18 0.00038 33.0 3.6 40 50-90 322-362 (821)
382 PRK14969 DNA polymerase III su 53.0 17 0.00037 32.1 3.6 40 74-114 117-156 (527)
383 PRK08699 DNA polymerase III su 53.0 62 0.0013 26.7 6.6 40 74-114 111-150 (325)
384 PRK07399 DNA polymerase III su 53.0 57 0.0012 26.7 6.4 40 74-115 122-161 (314)
385 TIGR01448 recD_rel helicase, p 52.8 19 0.00042 33.0 4.0 38 75-116 415-452 (720)
386 TIGR00069 hisD histidinol dehy 52.8 38 0.00083 28.7 5.4 67 1-81 233-299 (393)
387 PRK13770 histidinol dehydrogen 52.4 34 0.00074 29.2 5.1 27 1-27 254-280 (416)
388 PF05876 Terminase_GpA: Phage 52.1 15 0.00033 32.6 3.1 79 2-89 65-147 (557)
389 PF04273 DUF442: Putative phos 51.9 23 0.00049 24.2 3.3 40 159-199 55-98 (110)
390 KOG0350 DEAD-box ATP-dependent 51.6 55 0.0012 28.8 6.2 73 2-82 432-507 (620)
391 PRK04841 transcriptional regul 51.6 19 0.00041 33.7 3.8 44 76-119 121-164 (903)
392 PRK14965 DNA polymerase III su 51.4 23 0.0005 31.7 4.1 40 74-114 117-156 (576)
393 COG2909 MalT ATP-dependent tra 51.4 21 0.00046 33.2 3.9 44 76-119 129-172 (894)
394 PRK14951 DNA polymerase III su 51.1 20 0.00044 32.3 3.7 42 75-118 123-164 (618)
395 CHL00181 cbbX CbbX; Provisiona 50.3 40 0.00088 27.1 5.1 48 78-125 124-177 (287)
396 PRK13341 recombination factor 50.1 33 0.00071 31.7 5.0 43 75-122 108-150 (725)
397 PF13307 Helicase_C_2: Helicas 50.0 22 0.00047 26.0 3.3 77 2-86 12-91 (167)
398 cd03273 ABC_SMC2_euk Eukaryoti 49.7 26 0.00057 27.3 3.9 42 75-116 187-228 (251)
399 COG1474 CDC6 Cdc6-related prot 49.6 56 0.0012 27.4 5.9 48 75-123 122-170 (366)
400 PRK00877 hisD bifunctional his 49.4 44 0.00096 28.6 5.3 26 1-26 264-289 (425)
401 PF02670 DXP_reductoisom: 1-de 48.6 94 0.002 21.9 7.8 62 3-67 2-63 (129)
402 cd03274 ABC_SMC4_euk Eukaryoti 48.6 25 0.00055 26.8 3.6 39 76-114 149-187 (212)
403 CHL00073 chlN photochlorophyll 48.3 67 0.0015 27.9 6.3 75 4-88 343-419 (457)
404 PF14792 DNA_pol_B_palm: DNA p 48.3 17 0.00036 24.9 2.3 49 9-61 4-52 (112)
405 cd00860 ThrRS_anticodon ThrRS 48.3 67 0.0015 20.1 7.0 49 3-53 5-53 (91)
406 cd03240 ABC_Rad50 The catalyti 47.7 26 0.00056 26.5 3.5 43 74-116 137-182 (204)
407 COG0141 HisD Histidinol dehydr 47.6 52 0.0011 28.1 5.4 27 1-27 260-286 (425)
408 cd06572 Histidinol_dh Histidin 47.4 50 0.0011 28.0 5.2 27 1-27 237-263 (390)
409 COG1444 Predicted P-loop ATPas 47.2 65 0.0014 29.8 6.3 94 2-118 264-357 (758)
410 KOG1802 RNA helicase nonsense 46.8 76 0.0016 29.1 6.4 30 2-36 457-486 (935)
411 KOG0740 AAA+-type ATPase [Post 45.9 46 0.001 28.6 4.9 61 75-135 244-317 (428)
412 PRK06871 DNA polymerase III su 45.6 87 0.0019 25.8 6.4 64 50-114 72-144 (325)
413 COG4588 AcfC Accessory coloniz 45.5 1.2E+02 0.0025 23.5 6.4 87 16-106 36-124 (252)
414 PRK06964 DNA polymerase III su 45.2 99 0.0022 25.7 6.7 40 74-114 130-169 (342)
415 TIGR02673 FtsE cell division A 45.1 20 0.00043 27.1 2.5 49 74-122 153-201 (214)
416 PRK14959 DNA polymerase III su 44.9 44 0.00095 30.2 4.8 18 74-91 117-134 (624)
417 PF05970 PIF1: PIF1-like helic 44.6 19 0.00041 30.1 2.4 30 74-104 100-129 (364)
418 PRK08939 primosomal protein Dn 44.4 1.7E+02 0.0038 23.8 9.7 89 29-118 156-261 (306)
419 TIGR03871 ABC_peri_MoxJ_2 quin 44.0 56 0.0012 24.7 4.9 44 20-64 27-70 (232)
420 TIGR03346 chaperone_ClpB ATP-d 43.9 30 0.00066 32.5 3.9 47 76-122 266-315 (852)
421 PRK07276 DNA polymerase III su 43.8 92 0.002 25.3 6.2 64 50-114 70-141 (290)
422 cd00267 ABC_ATPase ABC (ATP-bi 43.6 19 0.00042 25.7 2.1 43 74-116 96-138 (157)
423 PF09587 PGA_cap: Bacterial ca 43.5 68 0.0015 25.1 5.3 51 8-59 166-224 (250)
424 KOG0343 RNA Helicase [RNA proc 42.8 1.2E+02 0.0027 27.2 7.0 70 3-82 317-389 (758)
425 PRK06305 DNA polymerase III su 42.7 38 0.00082 29.3 4.0 39 75-114 120-158 (451)
426 TIGR00963 secA preprotein tran 42.4 1.1E+02 0.0025 28.3 7.1 51 2-59 408-461 (745)
427 smart00382 AAA ATPases associa 42.3 41 0.00088 22.4 3.6 21 77-97 79-99 (148)
428 TIGR02168 SMC_prok_B chromosom 42.1 33 0.00072 32.9 4.0 42 75-116 1110-1151(1179)
429 PF03129 HGTP_anticodon: Antic 42.0 91 0.002 19.9 6.7 47 11-62 17-64 (94)
430 cd03263 ABC_subfamily_A The AB 41.8 27 0.00059 26.5 2.8 50 74-124 149-198 (220)
431 cd03275 ABC_SMC1_euk Eukaryoti 41.5 43 0.00093 26.1 3.9 40 76-115 177-217 (247)
432 KOG0342 ATP-dependent RNA heli 41.3 62 0.0013 28.3 4.9 68 2-81 333-403 (543)
433 PRK14962 DNA polymerase III su 41.2 65 0.0014 28.1 5.3 17 74-90 115-131 (472)
434 PRK07993 DNA polymerase III su 41.0 1.1E+02 0.0024 25.3 6.3 64 50-114 72-145 (334)
435 cd03229 ABC_Class3 This class 40.7 21 0.00046 26.2 2.0 45 74-118 116-161 (178)
436 KOG2543 Origin recognition com 40.7 1.1E+02 0.0023 26.2 6.1 64 76-140 115-180 (438)
437 KOG2004 Mitochondrial ATP-depe 40.6 62 0.0013 30.0 5.0 46 55-104 488-533 (906)
438 PRK10865 protein disaggregatio 40.4 36 0.00078 32.0 3.8 46 77-122 272-320 (857)
439 PRK12723 flagellar biosynthesi 40.4 2.3E+02 0.005 24.1 11.2 55 74-128 252-309 (388)
440 TIGR00635 ruvB Holliday juncti 40.4 1.9E+02 0.0041 23.1 9.7 16 75-90 80-95 (305)
441 KOG0346 RNA helicase [RNA proc 40.3 35 0.00076 29.5 3.3 54 2-60 271-327 (569)
442 PRK14955 DNA polymerase III su 40.2 44 0.00096 28.2 4.0 41 73-114 124-164 (397)
443 cd03241 ABC_RecN RecN ATPase i 39.9 42 0.0009 26.7 3.7 41 76-116 192-232 (276)
444 PF13241 NAD_binding_7: Putati 39.4 42 0.0009 22.3 3.1 34 28-61 7-40 (103)
445 PRK11264 putative amino-acid A 39.2 30 0.00065 26.8 2.7 44 74-117 160-203 (250)
446 cd03215 ABC_Carb_Monos_II This 39.2 28 0.0006 25.7 2.4 43 74-116 120-162 (182)
447 PRK06645 DNA polymerase III su 39.1 70 0.0015 28.2 5.1 18 74-91 126-143 (507)
448 PF01695 IstB_IS21: IstB-like 39.1 23 0.0005 26.3 2.0 89 29-118 47-150 (178)
449 PRK14873 primosome assembly pr 38.9 2.8E+02 0.006 25.5 9.0 62 13-90 441-502 (665)
450 cd03216 ABC_Carb_Monos_I This 38.8 27 0.00059 25.3 2.3 42 74-115 98-139 (163)
451 TIGR02397 dnaX_nterm DNA polym 38.6 39 0.00084 27.7 3.4 39 74-113 115-153 (355)
452 PRK11448 hsdR type I restricti 38.6 2E+02 0.0044 28.2 8.4 57 2-58 701-763 (1123)
453 PHA03372 DNA packaging termina 38.5 51 0.0011 29.8 4.2 62 52-117 271-337 (668)
454 TIGR03345 VI_ClpV1 type VI sec 38.3 36 0.00079 32.0 3.4 44 78-121 282-328 (852)
455 COG2256 MGS1 ATPase related to 38.2 39 0.00086 28.8 3.3 40 75-119 103-142 (436)
456 PRK14953 DNA polymerase III su 38.1 43 0.00094 29.3 3.7 37 74-111 117-153 (486)
457 cd00458 SugarP_isomerase Sugar 38.0 1.1E+02 0.0025 22.3 5.5 137 9-183 2-147 (169)
458 PRK06090 DNA polymerase III su 37.9 1.3E+02 0.0028 24.8 6.2 65 50-115 72-146 (319)
459 cd03269 ABC_putative_ATPase Th 37.7 32 0.0007 25.9 2.6 43 74-116 144-186 (210)
460 COG2842 Uncharacterized ATPase 37.6 1.5E+02 0.0032 24.2 6.3 30 74-104 163-192 (297)
461 PRK00856 pyrB aspartate carbam 37.5 1.1E+02 0.0025 24.9 5.9 55 6-62 136-193 (305)
462 PRK09762 galactosamine-6-phosp 37.3 2E+02 0.0042 22.3 7.1 88 58-146 39-139 (232)
463 PRK07246 bifunctional ATP-depe 37.1 2.5E+02 0.0055 26.5 8.7 111 2-128 650-764 (820)
464 cd03266 ABC_NatA_sodium_export 37.0 30 0.00065 26.2 2.4 43 74-116 152-194 (218)
465 PRK14722 flhF flagellar biosyn 36.8 2.6E+02 0.0056 23.6 9.8 55 74-128 213-269 (374)
466 cd03244 ABCC_MRP_domain2 Domai 36.8 56 0.0012 24.7 3.9 42 74-115 155-196 (221)
467 PF14459 Prok-E2_C: Prokaryoti 36.6 1.2E+02 0.0026 20.8 4.8 34 3-37 30-63 (131)
468 TIGR02639 ClpA ATP-dependent C 36.5 56 0.0012 30.2 4.3 43 78-120 276-322 (731)
469 PRK12904 preprotein translocas 36.5 1.4E+02 0.0031 28.1 6.8 51 2-59 433-486 (830)
470 PF14516 AAA_35: AAA-like doma 36.3 34 0.00074 28.1 2.7 34 56-90 107-141 (331)
471 KOG0921 Dosage compensation co 36.2 42 0.00091 31.8 3.3 32 53-88 474-505 (1282)
472 COG0466 Lon ATP-dependent Lon 36.2 58 0.0013 30.0 4.2 46 55-104 400-445 (782)
473 PRK14970 DNA polymerase III su 36.2 57 0.0012 27.1 4.0 18 74-91 106-123 (367)
474 cd03225 ABC_cobalt_CbiO_domain 36.1 30 0.00066 26.0 2.3 45 74-118 150-194 (211)
475 PLN02926 histidinol dehydrogen 36.0 91 0.002 26.8 5.2 27 1-27 268-294 (431)
476 cd03228 ABCC_MRP_Like The MRP 36.0 60 0.0013 23.6 3.8 40 74-114 112-151 (171)
477 cd03226 ABC_cobalt_CbiO_domain 35.9 28 0.00061 26.1 2.0 44 74-117 142-185 (205)
478 cd03213 ABCG_EPDR ABCG transpo 35.8 41 0.00088 25.1 2.9 43 74-116 127-169 (194)
479 PRK14963 DNA polymerase III su 35.8 51 0.0011 29.0 3.8 16 74-89 114-129 (504)
480 PRK09493 glnQ glutamine ABC tr 35.4 33 0.00072 26.4 2.4 44 74-117 152-195 (240)
481 PRK12447 histidinol dehydrogen 35.3 1.1E+02 0.0023 26.4 5.5 67 1-81 259-325 (426)
482 PF10100 DUF2338: Uncharacteri 35.3 2.9E+02 0.0063 23.7 8.7 172 4-186 5-193 (429)
483 PF05729 NACHT: NACHT domain 35.2 1.6E+02 0.0034 20.6 6.2 58 79-139 84-149 (166)
484 COG1131 CcmA ABC-type multidru 35.1 31 0.00066 27.9 2.2 53 74-126 152-205 (293)
485 PRK05563 DNA polymerase III su 35.0 48 0.0011 29.5 3.6 43 74-118 117-159 (559)
486 PRK01713 ornithine carbamoyltr 35.0 1.4E+02 0.0031 24.7 6.1 55 7-63 136-193 (334)
487 cd03218 ABC_YhbG The ABC trans 34.9 34 0.00074 26.2 2.4 51 74-124 149-199 (232)
488 PF14532 Sigma54_activ_2: Sigm 34.8 82 0.0018 21.9 4.2 40 76-116 69-109 (138)
489 PRK11124 artP arginine transpo 34.7 34 0.00074 26.4 2.4 45 74-118 157-201 (242)
490 TIGR03771 anch_rpt_ABC anchore 34.4 34 0.00074 26.1 2.3 44 74-117 129-172 (223)
491 cd03262 ABC_HisP_GlnQ_permease 34.3 35 0.00075 25.7 2.3 42 74-115 151-192 (213)
492 PF13558 SbcCD_C: Putative exo 34.3 53 0.0012 21.3 2.9 29 73-101 60-88 (90)
493 PF13245 AAA_19: Part of AAA d 34.2 55 0.0012 20.5 2.9 18 2-19 45-62 (76)
494 PRK14950 DNA polymerase III su 34.1 80 0.0017 28.3 4.8 38 74-112 118-155 (585)
495 PF03808 Glyco_tran_WecB: Glyc 33.8 1.4E+02 0.0031 21.8 5.5 13 25-37 71-83 (172)
496 PRK12358 putative 6-phosphoglu 33.8 1.6E+02 0.0036 22.8 6.1 65 3-85 3-68 (239)
497 COG1875 NYN ribonuclease and A 33.7 55 0.0012 27.7 3.4 34 78-115 353-386 (436)
498 cd03230 ABC_DR_subfamily_A Thi 33.6 42 0.0009 24.5 2.6 40 74-113 111-150 (173)
499 PF07302 AroM: AroM protein; 33.5 94 0.002 24.1 4.5 25 75-105 177-201 (221)
500 PRK13543 cytochrome c biogenes 33.5 41 0.00089 25.5 2.6 43 74-116 153-195 (214)
No 1
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-40 Score=263.68 Aligned_cols=184 Identities=35% Similarity=0.580 Sum_probs=176.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
+|+||+||||||.||..+++.|+... |++++.+.||.+...+..++ .++|||||+||+||++++.+.+.+++..++++
T Consensus 131 ~~lVLtPtRELA~QI~e~fe~Lg~~i-glr~~~lvGG~~m~~q~~~L-~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~L 208 (476)
T KOG0330|consen 131 FALVLTPTRELAQQIAEQFEALGSGI-GLRVAVLVGGMDMMLQANQL-SKKPHILVATPGRLWDHLENTKGFSLEQLKFL 208 (476)
T ss_pred eEEEecCcHHHHHHHHHHHHHhcccc-CeEEEEEecCchHHHHHHHh-hcCCCEEEeCcHHHHHHHHhccCccHHHhHHH
Confidence 69999999999999999999999998 99999999999999999998 57899999999999999997789999999999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCCC
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPL 160 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (203)
|+||||++++..|.+.+..|+..+|..+|+++||||||..+..+...-+.+|+.+.+... +.+-+
T Consensus 209 VlDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~k---------------y~tv~ 273 (476)
T KOG0330|consen 209 VLDEADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSK---------------YQTVD 273 (476)
T ss_pred hhchHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccch---------------hcchH
Confidence 999999999999999999999999999999999999999999999999999999999998 88999
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCeEEEEeccCCccc
Q 028826 161 GLHLEYLECESDKKPSQLVDLLIKNKSKKIIMYVQHGNFSE 201 (203)
Q Consensus 161 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~ns~~~~e 201 (203)
.++|+|+.++..+|...|..+|++..+.+.|||||+...++
T Consensus 274 ~lkQ~ylfv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~ 314 (476)
T KOG0330|consen 274 HLKQTYLFVPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTR 314 (476)
T ss_pred HhhhheEeccccccchhHHHHHHhhcCCcEEEEEeccchHH
Confidence 99999999999999999999999999999999999987654
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-39 Score=272.01 Aligned_cols=186 Identities=33% Similarity=0.542 Sum_probs=170.7
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
.+|||+||||||.|++.++++++... ++++.+++||.....|.+.+ +.+.||+||||+||.++++. +.+++++++++
T Consensus 167 ~vLVL~PTRELA~QV~~~~~~~~~~~-~~~~~cvyGG~~~~~Q~~~l-~~gvdiviaTPGRl~d~le~-g~~~l~~v~yl 243 (519)
T KOG0331|consen 167 IVLVLAPTRELAVQVQAEAREFGKSL-RLRSTCVYGGAPKGPQLRDL-ERGVDVVIATPGRLIDLLEE-GSLNLSRVTYL 243 (519)
T ss_pred eEEEEcCcHHHHHHHHHHHHHHcCCC-CccEEEEeCCCCccHHHHHH-hcCCcEEEeCChHHHHHHHc-CCccccceeEE
Confidence 37999999999999999999999988 79999999999999999999 57899999999999999999 99999999999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhC-CCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCC
Q 028826 81 VLDEADRLLDMGFQKQISYIISRL-PKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTP 159 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~-~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (203)
|+||||+|++.||+++++.|++.+ +..+|+++||||+|.+++.++..++.+|..+.+....+ ....
T Consensus 244 VLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~-------------~~a~ 310 (519)
T KOG0331|consen 244 VLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKE-------------LKAN 310 (519)
T ss_pred EeccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhh-------------hhhh
Confidence 999999999999999999999999 56669999999999999999999999999999876521 4567
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcC---CCCeEEEEeccCCcccC
Q 028826 160 LGLHLEYLECESDKKPSQLVDLLIKN---KSKKIIMYVQHGNFSED 202 (203)
Q Consensus 160 ~~i~~~~~~~~~~~k~~~l~~ll~~~---~~~~~lIF~ns~~~~e~ 202 (203)
.++.|....|++..|...|..+|+.. ..+|+||||+|++.|++
T Consensus 311 ~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~ 356 (519)
T KOG0331|consen 311 HNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDE 356 (519)
T ss_pred cchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHH
Confidence 78999999999888999999988754 56799999999999875
No 3
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.2e-39 Score=246.95 Aligned_cols=183 Identities=32% Similarity=0.492 Sum_probs=174.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
|||||+||||||.|+.+.+..++.++ ++++..+.||.+..++.+.+ +.+.+++.|||+|+++|++. +.+.-..++++
T Consensus 97 Q~lilsPTRELa~Qi~~vi~alg~~m-nvq~hacigg~n~gedikkl-d~G~hvVsGtPGrv~dmikr-~~L~tr~vkml 173 (400)
T KOG0328|consen 97 QALILSPTRELAVQIQKVILALGDYM-NVQCHACIGGKNLGEDIKKL-DYGQHVVSGTPGRVLDMIKR-RSLRTRAVKML 173 (400)
T ss_pred eEEEecChHHHHHHHHHHHHHhcccc-cceEEEEecCCccchhhhhh-cccceEeeCCCchHHHHHHh-ccccccceeEE
Confidence 68999999999999999999999988 99999999999999999988 58999999999999999999 99999999999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCCC
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPL 160 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (203)
|+||||.|++.||.+.+..+.+.+|+.+|++++|||+|.++.++.++|+.+|+.+.+..+ .....
T Consensus 174 VLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrd---------------eltlE 238 (400)
T KOG0328|consen 174 VLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRD---------------ELTLE 238 (400)
T ss_pred EeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecC---------------CCchh
Confidence 999999999999999999999999999999999999999999999999999999999888 56888
Q ss_pred ceeEEEEEcCCCC-cHHHHHHHHhcCCCCeEEEEeccCCccc
Q 028826 161 GLHLEYLECESDK-KPSQLVDLLIKNKSKKIIMYVQHGNFSE 201 (203)
Q Consensus 161 ~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~lIF~ns~~~~e 201 (203)
+++|+|..++.++ |++.|.+++....-.+++|||||++.++
T Consensus 239 gIKqf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVd 280 (400)
T KOG0328|consen 239 GIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVD 280 (400)
T ss_pred hhhhheeeechhhhhHhHHHHHhhhhehheEEEEecccchhh
Confidence 9999999998765 9999999999998889999999998763
No 4
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-38 Score=273.35 Aligned_cols=186 Identities=37% Similarity=0.619 Sum_probs=172.7
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
|||++||||||.||++++++++.+.+++++..++||.+...+...+. .++|||||||+|+++++.. +.+++++++++|
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~-~~~~ivVaTPGRllD~i~~-~~l~l~~v~~lV 179 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALK-RGVDIVVATPGRLLDLIKR-GKLDLSGVETLV 179 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHh-cCCCEEEECccHHHHHHHc-CCcchhhcCEEE
Confidence 89999999999999999999998875699999999999999998885 4799999999999999999 899999999999
Q ss_pred EcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCCCc
Q 028826 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLG 161 (203)
Q Consensus 82 iDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (203)
+||||+|++.||.+++..|+..+|.++|+++||||+|+.+..+++.++.+|..+.+..... ......
T Consensus 180 lDEADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~-------------~~~~~~ 246 (513)
T COG0513 180 LDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKL-------------ERTLKK 246 (513)
T ss_pred eccHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccc-------------cccccC
Confidence 9999999999999999999999999999999999999999999999999999888885511 237899
Q ss_pred eeEEEEEcCCCC-cHHHHHHHHhcCCCCeEEEEeccCCcccC
Q 028826 162 LHLEYLECESDK-KPSQLVDLLIKNKSKKIIMYVQHGNFSED 202 (203)
Q Consensus 162 i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~lIF~ns~~~~e~ 202 (203)
+.|+|+.+++.+ |...|..+++.....++||||||+..|++
T Consensus 247 i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~ 288 (513)
T COG0513 247 IKQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEE 288 (513)
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHH
Confidence 999999999876 99999999999988899999999988764
No 5
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-37 Score=255.60 Aligned_cols=183 Identities=38% Similarity=0.589 Sum_probs=171.7
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
|||++||||||.|+++++.+.+++. ++..+.+.||.+...+...+ ++.+|+|||||||++++..+..++.++++++|
T Consensus 144 alIISPTRELA~QtFevL~kvgk~h-~fSaGLiiGG~~~k~E~eRi--~~mNILVCTPGRLLQHmde~~~f~t~~lQmLv 220 (758)
T KOG0343|consen 144 ALIISPTRELALQTFEVLNKVGKHH-DFSAGLIIGGKDVKFELERI--SQMNILVCTPGRLLQHMDENPNFSTSNLQMLV 220 (758)
T ss_pred eEEecchHHHHHHHHHHHHHHhhcc-ccccceeecCchhHHHHHhh--hcCCeEEechHHHHHHhhhcCCCCCCcceEEE
Confidence 8999999999999999999999988 89999999999988777776 57999999999999999987788999999999
Q ss_pred EcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCCCc
Q 028826 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLG 161 (203)
Q Consensus 82 iDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (203)
+||||++++.||...+..|++.+|..+|+++||||-+..+..+++..+.+|.+|.+..... ...|.+
T Consensus 221 LDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~-------------~atP~~ 287 (758)
T KOG0343|consen 221 LDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAV-------------AATPSN 287 (758)
T ss_pred eccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEecccc-------------ccChhh
Confidence 9999999999999999999999999999999999999999999999999999998874422 679999
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCeEEEEeccCCcc
Q 028826 162 LHLEYLECESDKKPSQLVDLLIKNKSKKIIMYVQHGNFS 200 (203)
Q Consensus 162 i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~ns~~~~ 200 (203)
++|+|+.++.++|++.|+.+++.+...++|||.+|.+.+
T Consensus 288 L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqv 326 (758)
T KOG0343|consen 288 LQQSYVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQV 326 (758)
T ss_pred hhheEEEEehhhHHHHHHHHHHhccccceEEEEehhhHH
Confidence 999999999999999999999999999999999997654
No 6
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-37 Score=254.32 Aligned_cols=184 Identities=33% Similarity=0.533 Sum_probs=172.6
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
+|||+||||||.|++++.++++.+. ++.++.+.||.+...|...| ..+|||+|+||||+.+++++..+++++++..+|
T Consensus 255 VLVL~PTRELaiQv~sV~~qlaqFt-~I~~~L~vGGL~lk~QE~~L-Rs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLv 332 (691)
T KOG0338|consen 255 VLVLVPTRELAIQVHSVTKQLAQFT-DITVGLAVGGLDLKAQEAVL-RSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLV 332 (691)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhc-cceeeeeecCccHHHHHHHH-hhCCCEEEecchhHHHHhccCCCccccceeEEE
Confidence 6999999999999999999999988 89999999999999999888 578999999999999999987889999999999
Q ss_pred EcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCCCc
Q 028826 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLG 161 (203)
Q Consensus 82 iDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (203)
+||||+|++.||.+.+..|++.+|+++|+++|||||+..+..++...|..|+.+.++.. ....+.
T Consensus 333 lDEADRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~---------------~~~a~~ 397 (691)
T KOG0338|consen 333 LDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPN---------------KDTAPK 397 (691)
T ss_pred echHHHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCc---------------cccchh
Confidence 99999999999999999999999999999999999999999999999999999999998 678899
Q ss_pred eeEEEEEcCC---CCcHHHHHHHHhcCCCCeEEEEeccCCcccC
Q 028826 162 LHLEYLECES---DKKPSQLVDLLIKNKSKKIIMYVQHGNFSED 202 (203)
Q Consensus 162 i~~~~~~~~~---~~k~~~l~~ll~~~~~~~~lIF~ns~~~~e~ 202 (203)
+.|.|+.+.. ..+...|..++...-..++|||+.|++.|++
T Consensus 398 LtQEFiRIR~~re~dRea~l~~l~~rtf~~~~ivFv~tKk~AHR 441 (691)
T KOG0338|consen 398 LTQEFIRIRPKREGDREAMLASLITRTFQDRTIVFVRTKKQAHR 441 (691)
T ss_pred hhHHHheeccccccccHHHHHHHHHHhcccceEEEEehHHHHHH
Confidence 9999987753 4688889999987778899999999998874
No 7
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.6e-37 Score=249.20 Aligned_cols=187 Identities=60% Similarity=0.919 Sum_probs=175.3
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHh-CCCccCCCccEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER-MDVLDFRNLVIL 80 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~-~~~~~l~~v~~l 80 (203)
|||++||||||.||++++..|..+++++++.++.||.+.+++...+.+.+|+|+|||||||.+++.+ ...+++.+++++
T Consensus 82 alIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~L 161 (567)
T KOG0345|consen 82 ALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEIL 161 (567)
T ss_pred EEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceE
Confidence 8999999999999999999999998899999999999999999999999999999999999999987 345677899999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCCC
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPL 160 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (203)
|+||||+|++.||...++.|++.+|+.+.+-+||||..+.+.++.+..+++|+.|.+..... ...|+
T Consensus 162 VLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~-------------~~tPS 228 (567)
T KOG0345|consen 162 VLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSK-------------SATPS 228 (567)
T ss_pred EecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeeccccc-------------ccCch
Confidence 99999999999999999999999999999999999999999999999999999999988732 23889
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCeEEEEeccCCccc
Q 028826 161 GLHLEYLECESDKKPSQLVDLLIKNKSKKIIMYVQHGNFSE 201 (203)
Q Consensus 161 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~ns~~~~e 201 (203)
.+..+|..|+..+|...|.++|.....+++|||..|-.+++
T Consensus 229 ~L~~~Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVe 269 (567)
T KOG0345|consen 229 SLALEYLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVE 269 (567)
T ss_pred hhcceeeEecHHHHHHHHHHHHhccccccEEEEecCcchHH
Confidence 99999999999999999999999999999999999877654
No 8
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.1e-37 Score=240.74 Aligned_cols=182 Identities=34% Similarity=0.514 Sum_probs=173.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
||+|++||||||.|+...++.+++++ ++++..-+||.+...+.-.+ ..+.|++||||+|++++.++ +.-+++++.++
T Consensus 155 Q~~ilVPtrelALQtSqvc~~lskh~-~i~vmvttGGT~lrDDI~Rl-~~~VH~~vgTPGRIlDL~~K-gVa~ls~c~~l 231 (459)
T KOG0326|consen 155 QAIILVPTRELALQTSQVCKELSKHL-GIKVMVTTGGTSLRDDIMRL-NQTVHLVVGTPGRILDLAKK-GVADLSDCVIL 231 (459)
T ss_pred eEEEEeecchhhHHHHHHHHHHhccc-CeEEEEecCCcccccceeee-cCceEEEEcCChhHHHHHhc-ccccchhceEE
Confidence 68999999999999999999999999 89999999999998888777 67899999999999999999 89999999999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCCC
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPL 160 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (203)
|+||||.|++..|.+.+.+++..+|+++|++++|||+|--|..|++.++.+|+.+..-.+ ..+.
T Consensus 232 V~DEADKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~e----------------Ltl~ 295 (459)
T KOG0326|consen 232 VMDEADKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEE----------------LTLK 295 (459)
T ss_pred EechhhhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhh----------------hhhc
Confidence 999999999999999999999999999999999999999999999999999999988665 5788
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCeEEEEeccCCccc
Q 028826 161 GLHLEYLECESDKKPSQLVDLLIKNKSKKIIMYVQHGNFSE 201 (203)
Q Consensus 161 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~ns~~~~e 201 (203)
++.|+|.++.+..|..-|..++.+..-.+.||||||-+++|
T Consensus 296 GvtQyYafV~e~qKvhCLntLfskLqINQsIIFCNS~~rVE 336 (459)
T KOG0326|consen 296 GVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVE 336 (459)
T ss_pred chhhheeeechhhhhhhHHHHHHHhcccceEEEeccchHhH
Confidence 99999999999999999999999998889999999988876
No 9
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-35 Score=241.77 Aligned_cols=184 Identities=32% Similarity=0.525 Sum_probs=167.7
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
++||+|||||||.||+.++++|++.+ ++++++++||.+..+|.+.|. .++.|||+||+||+++++. +..++.++.+|
T Consensus 298 i~vilvPTrela~Qi~~eaKkf~K~y-gl~~v~~ygGgsk~eQ~k~Lk-~g~EivVaTPgRlid~Vkm-Katn~~rvS~L 374 (731)
T KOG0339|consen 298 IGVILVPTRELASQIFSEAKKFGKAY-GLRVVAVYGGGSKWEQSKELK-EGAEIVVATPGRLIDMVKM-KATNLSRVSYL 374 (731)
T ss_pred eEEEEeccHHHHHHHHHHHHHhhhhc-cceEEEeecCCcHHHHHHhhh-cCCeEEEechHHHHHHHHh-hcccceeeeEE
Confidence 58999999999999999999999998 999999999999999999995 8999999999999999999 99999999999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCCC
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPL 160 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (203)
|+||||+|++.||...++.|..++.+.+|+++||||++..++.+++.+|.+|+.+....- .....
T Consensus 375 V~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~v---------------gean~ 439 (731)
T KOG0339|consen 375 VLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEV---------------GEANE 439 (731)
T ss_pred EEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeeh---------------hcccc
Confidence 999999999999999999999999999999999999999999999999999998877655 44667
Q ss_pred ceeEEEEEcCCC-CcHHHHHHHHh-cCCCCeEEEEeccCCcccC
Q 028826 161 GLHLEYLECESD-KKPSQLVDLLI-KNKSKKIIMYVQHGNFSED 202 (203)
Q Consensus 161 ~i~~~~~~~~~~-~k~~~l~~ll~-~~~~~~~lIF~ns~~~~e~ 202 (203)
.|.|.+..|+.+ .|..+|..-|- ....+++|||+.-+.++|+
T Consensus 440 dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~ 483 (731)
T KOG0339|consen 440 DITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEE 483 (731)
T ss_pred chhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHH
Confidence 899999999764 67777766554 4567899999998887764
No 10
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=4e-35 Score=241.14 Aligned_cols=183 Identities=31% Similarity=0.539 Sum_probs=172.7
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
+|+|++||||||+||.++-.+|+..+ +++++.+.||.+.+++--++ ..+|+|+|+||++|.+.+.+ ..+-++++.++
T Consensus 324 yaiilaptReLaqqIeeEt~kf~~~l-g~r~vsvigg~s~EEq~fql-s~gceiviatPgrLid~Len-r~lvl~qctyv 400 (673)
T KOG0333|consen 324 YAIILAPTRELAQQIEEETNKFGKPL-GIRTVSVIGGLSFEEQGFQL-SMGCEIVIATPGRLIDSLEN-RYLVLNQCTYV 400 (673)
T ss_pred eeeeechHHHHHHHHHHHHHHhcccc-cceEEEEecccchhhhhhhh-hccceeeecCchHHHHHHHH-HHHHhccCceE
Confidence 58999999999999999999999999 89999999999999887777 57999999999999999998 88889999999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCCCC-------------------------CcEEEEeeecChhHHHHHHhcCCCCeEE
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLPKL-------------------------RRTGLFSATQTEAVEELSKAGLRNPVRI 135 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~~~-------------------------~q~i~~SAT~~~~v~~~~~~~l~~~~~i 135 (203)
|+||||.|+|.||.+++..++.++|.. +|+++||||+|+.+..+++.|+.+|+.+
T Consensus 401 vldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~v 480 (673)
T KOG0333|consen 401 VLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVV 480 (673)
T ss_pred eccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEE
Confidence 999999999999999999999999731 5999999999999999999999999999
Q ss_pred EeccCcccccccchhhhhccCCCCCceeEEEEEcCCCCcHHHHHHHHhcCCCCeEEEEeccCCccc
Q 028826 136 EVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPSQLVDLLIKNKSKKIIMYVQHGNFSE 201 (203)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~ns~~~~e 201 (203)
.++.. +...+.+.|.++.+++.+|...|..+|++...+|+|||+|+++.|+
T Consensus 481 tig~~---------------gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d 531 (673)
T KOG0333|consen 481 TIGSA---------------GKPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGAD 531 (673)
T ss_pred EeccC---------------CCCccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEechhhHH
Confidence 99998 6788999999999999999999999999998889999999999875
No 11
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.1e-34 Score=236.87 Aligned_cols=186 Identities=39% Similarity=0.571 Sum_probs=169.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
.+||++||||||.|++.+++++..+.+++.+..+.||.....+.+.+. ++++|+|+|||||++++.+.+.+-..+++++
T Consensus 156 ~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~-k~~niliATPGRLlDHlqNt~~f~~r~~k~l 234 (543)
T KOG0342|consen 156 GVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLV-KGCNILIATPGRLLDHLQNTSGFLFRNLKCL 234 (543)
T ss_pred eEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhh-ccccEEEeCCchHHhHhhcCCcchhhcccee
Confidence 379999999999999999999999888999999999999888888885 4999999999999999999777778899999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCC-CCeEEEeccCcccccccchhhhhccCCCC
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLR-NPVRIEVRAESKSHHASASSQQLASSKTP 159 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (203)
|+||||++++.||++++.+|+..+|+.+|..+||||.|+.|+++++..+. +|.++.+...++ ..+.
T Consensus 235 vlDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~-------------~~Th 301 (543)
T KOG0342|consen 235 VLDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGE-------------RETH 301 (543)
T ss_pred EeecchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCC-------------cchh
Confidence 99999999999999999999999999999999999999999999997776 589998877643 5678
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCC-CeEEEEeccCCcc
Q 028826 160 LGLHLEYLECESDKKPSQLVDLLIKNKS-KKIIMYVQHGNFS 200 (203)
Q Consensus 160 ~~i~~~~~~~~~~~k~~~l~~ll~~~~~-~~~lIF~ns~~~~ 200 (203)
..+.|-|+.++...++..+..+|+++.. .++||||+|...+
T Consensus 302 e~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~v 343 (543)
T KOG0342|consen 302 ERLEQGYVVAPSDSRFSLLYTFLKKNIKRYKIIVFFSTCMSV 343 (543)
T ss_pred hcccceEEeccccchHHHHHHHHHHhcCCceEEEEechhhHH
Confidence 8999999999999999999999998866 8999999987543
No 12
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=4.4e-34 Score=239.87 Aligned_cols=183 Identities=26% Similarity=0.475 Sum_probs=170.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
+++||+||||+|.||++.+.+++..+.|++|..+.||.....+...+ +.++|+||||||+.+++.. +.++.++++++
T Consensus 95 q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rl--k~~rIvIGtPGRi~qL~el-~~~n~s~vrlf 171 (980)
T KOG4284|consen 95 QKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL--KQTRIVIGTPGRIAQLVEL-GAMNMSHVRLF 171 (980)
T ss_pred eeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhh--hhceEEecCchHHHHHHHh-cCCCccceeEE
Confidence 57999999999999999999999988899999999999998888888 4688999999999999999 99999999999
Q ss_pred EEcchhHhhhh-chHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCC
Q 028826 81 VLDEADRLLDM-GFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTP 159 (203)
Q Consensus 81 ViDEad~l~~~-~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (203)
|+||||.|++. .|.+++..|+..+|.++|+++||||+|..+.+++.++|++|.+|..+.. ....
T Consensus 172 VLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~---------------d~~L 236 (980)
T KOG4284|consen 172 VLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNAD---------------DVQL 236 (980)
T ss_pred EeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccC---------------Ccee
Confidence 99999999985 4999999999999999999999999999999999999999999999888 6677
Q ss_pred CceeEEEEEcCCC--------CcHHHHHHHHhcCCCCeEEEEeccCCccc
Q 028826 160 LGLHLEYLECESD--------KKPSQLVDLLIKNKSKKIIMYVQHGNFSE 201 (203)
Q Consensus 160 ~~i~~~~~~~~~~--------~k~~~l~~ll~~~~~~~~lIF~ns~~~~e 201 (203)
-+|+|+++..+.- .|...|-+++++.++.++||||+...+|+
T Consensus 237 ~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~ 286 (980)
T KOG4284|consen 237 FGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAE 286 (980)
T ss_pred echhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhh
Confidence 8899999887653 48899999999999999999999988775
No 13
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=2.6e-33 Score=238.40 Aligned_cols=184 Identities=33% Similarity=0.595 Sum_probs=168.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
++||++||||||.|+.+++++++...+++++..++||.+...+...+ ..+++|+||||+++.+++.. +.+++++++++
T Consensus 74 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l-~~~~~IvV~Tp~rl~~~l~~-~~~~l~~l~~l 151 (460)
T PRK11776 74 QALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSL-EHGAHIIVGTPGRILDHLRK-GTLDLDALNTL 151 (460)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHh-cCCCCEEEEChHHHHHHHHc-CCccHHHCCEE
Confidence 48999999999999999999998877689999999999998888887 47899999999999999998 88999999999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCCC
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPL 160 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (203)
|+||||+|++.+|..++..++..++..+|+++||||+|+.+..+...++.+|..+.+... . ...
T Consensus 152 ViDEad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~---------------~-~~~ 215 (460)
T PRK11776 152 VLDEADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVEST---------------H-DLP 215 (460)
T ss_pred EEECHHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcC---------------C-CCC
Confidence 999999999999999999999999999999999999999999999999999998888665 2 345
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCeEEEEeccCCcccC
Q 028826 161 GLHLEYLECESDKKPSQLVDLLIKNKSKKIIMYVQHGNFSED 202 (203)
Q Consensus 161 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~ns~~~~e~ 202 (203)
.+.++|+.++..+|...|..++.....+++||||||++.|++
T Consensus 216 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~ 257 (460)
T PRK11776 216 AIEQRFYEVSPDERLPALQRLLLHHQPESCVVFCNTKKECQE 257 (460)
T ss_pred CeeEEEEEeCcHHHHHHHHHHHHhcCCCceEEEECCHHHHHH
Confidence 688999999988899999999998888899999999988763
No 14
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7e-34 Score=229.67 Aligned_cols=186 Identities=25% Similarity=0.391 Sum_probs=166.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCC-CceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCC-ccCCCcc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLP-DVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLV 78 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~-~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~-~~l~~v~ 78 (203)
.|+||+||||||+|+|.++.+|..+++ .++++-+.+..+......+| ...|||+|+||++++.++.. +. ..+..++
T Consensus 95 sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L-~d~pdIvV~TP~~ll~~~~~-~~~~~~~~l~ 172 (569)
T KOG0346|consen 95 SAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVAL-MDLPDIVVATPAKLLRHLAA-GVLEYLDSLS 172 (569)
T ss_pred eeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHH-ccCCCeEEeChHHHHHHHhh-ccchhhhhee
Confidence 489999999999999999999988774 67887777666655555566 57899999999999999988 66 6789999
Q ss_pred EEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCC
Q 028826 79 ILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKT 158 (203)
Q Consensus 79 ~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (203)
++|+||||.+++.||.++++.+.+++|+..|.++.|||+++++..+.+.++++|+++.+..++ ...
T Consensus 173 ~LVvDEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~e--------------l~~ 238 (569)
T KOG0346|consen 173 FLVVDEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGE--------------LPN 238 (569)
T ss_pred eEEechhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEecccc--------------CCC
Confidence 999999999999999999999999999999999999999999999999999999999998774 457
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhc-CCCCeEEEEeccCCcccC
Q 028826 159 PLGLHLEYLECESDKKPSQLVDLLIK-NKSKKIIMYVQHGNFSED 202 (203)
Q Consensus 159 ~~~i~~~~~~~~~~~k~~~l~~ll~~-~~~~~~lIF~ns~~~~e~ 202 (203)
+.++.|+++.|.+++|+-.++.+++- .-.+++|||+||-.+|.+
T Consensus 239 ~dqL~Qy~v~cse~DKflllyallKL~LI~gKsliFVNtIdr~Yr 283 (569)
T KOG0346|consen 239 PDQLTQYQVKCSEEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYR 283 (569)
T ss_pred cccceEEEEEeccchhHHHHHHHHHHHHhcCceEEEEechhhhHH
Confidence 78999999999999999999999984 456799999999888753
No 15
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=4.1e-33 Score=243.33 Aligned_cols=185 Identities=29% Similarity=0.523 Sum_probs=170.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
++|||+||||||.|+.+.+.++....+++++..++||.+...+.+.+ ..+++|||+||+++.+++.. +.+++++++++
T Consensus 76 ~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l-~~~~~IVVgTPgrl~d~l~r-~~l~l~~l~~l 153 (629)
T PRK11634 76 QILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL-RQGPQIVVGTPGRLLDHLKR-GTLDLSKLSGL 153 (629)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh-cCCCCEEEECHHHHHHHHHc-CCcchhhceEE
Confidence 47999999999999999999998887789999999999988888877 56899999999999999988 88999999999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCCC
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPL 160 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (203)
|+||||.|++++|.+++..++..+|..+|+++||||+|+.+..+.+.++.+|..+.+... ....+
T Consensus 154 VlDEAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~---------------~~~~~ 218 (629)
T PRK11634 154 VLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSS---------------VTTRP 218 (629)
T ss_pred EeccHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCc---------------cccCC
Confidence 999999999999999999999999999999999999999999999999999998888766 45667
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCeEEEEeccCCcccC
Q 028826 161 GLHLEYLECESDKKPSQLVDLLIKNKSKKIIMYVQHGNFSED 202 (203)
Q Consensus 161 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~ns~~~~e~ 202 (203)
.+.+.|+.+...+|...|..++......++||||||+..|++
T Consensus 219 ~i~q~~~~v~~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~ 260 (629)
T PRK11634 219 DISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLE 260 (629)
T ss_pred ceEEEEEEechhhHHHHHHHHHHhcCCCCEEEEeccHHHHHH
Confidence 888999988888999999999998888899999999987753
No 16
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=9.3e-33 Score=238.54 Aligned_cols=185 Identities=31% Similarity=0.514 Sum_probs=164.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
++|||+||||||.|+++++++++... ++++..++||.....+...+ ..+++|+|+||++|.+++.. +..++++++++
T Consensus 205 ~~LIL~PTreLa~Qi~~~~~~~~~~~-~i~~~~~~gg~~~~~q~~~l-~~~~~IlVaTPgrL~d~l~~-~~~~l~~v~~l 281 (545)
T PTZ00110 205 IVLVLAPTRELAEQIREQCNKFGASS-KIRNTVAYGGVPKRGQIYAL-RRGVEILIACPGRLIDFLES-NVTNLRRVTYL 281 (545)
T ss_pred EEEEECChHHHHHHHHHHHHHHhccc-CccEEEEeCCCCHHHHHHHH-HcCCCEEEECHHHHHHHHHc-CCCChhhCcEE
Confidence 37999999999999999999998877 89999999999988888777 46899999999999999988 78899999999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCC-CCeEEEeccCcccccccchhhhhccCCCC
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLR-NPVRIEVRAESKSHHASASSQQLASSKTP 159 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (203)
|+||||+|++++|.+.++.++..+++.+|+++||||+|..+..+++.++. +++.+.+.... ....
T Consensus 282 ViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~--------------l~~~ 347 (545)
T PTZ00110 282 VLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLD--------------LTAC 347 (545)
T ss_pred EeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCc--------------cccC
Confidence 99999999999999999999999999999999999999999999998886 57777775541 2345
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcC--CCCeEEEEeccCCcccC
Q 028826 160 LGLHLEYLECESDKKPSQLVDLLIKN--KSKKIIMYVQHGNFSED 202 (203)
Q Consensus 160 ~~i~~~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~ns~~~~e~ 202 (203)
.++.+.+..+++.+|...|..++... ..+++||||||++.|++
T Consensus 348 ~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~ 392 (545)
T PTZ00110 348 HNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADF 392 (545)
T ss_pred CCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHH
Confidence 67889998888889999999999865 56799999999998863
No 17
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.2e-32 Score=232.09 Aligned_cols=184 Identities=33% Similarity=0.516 Sum_probs=165.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
+||||+||||||.|+++++..+++.. ++++..++||.....+...+ ..++||+||||+++.+++.. +.+++++++++
T Consensus 85 ~~lil~PtreLa~Qi~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l-~~~~~IlV~TP~~l~~~l~~-~~~~l~~v~~l 161 (423)
T PRK04837 85 RALIMAPTRELAVQIHADAEPLAQAT-GLKLGLAYGGDGYDKQLKVL-ESGVDILIGTTGRLIDYAKQ-NHINLGAIQVV 161 (423)
T ss_pred eEEEECCcHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHh-cCCCCEEEECHHHHHHHHHc-CCcccccccEE
Confidence 48999999999999999999999887 89999999999888887777 56899999999999999988 88999999999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCCC--CCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCC
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLPK--LRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKT 158 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~~--~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (203)
|+||||++++++|..++..++..++. .+|.++||||++..+..++..++.+|..+.+... ...
T Consensus 162 ViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~---------------~~~ 226 (423)
T PRK04837 162 VLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPE---------------QKT 226 (423)
T ss_pred EEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCC---------------CcC
Confidence 99999999999999999999999974 5678999999999999999999999998888766 445
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCeEEEEeccCCcccC
Q 028826 159 PLGLHLEYLECESDKKPSQLVDLLIKNKSKKIIMYVQHGNFSED 202 (203)
Q Consensus 159 ~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~ns~~~~e~ 202 (203)
..++.+.++.....+|...|..++.....+++|||||+++.|++
T Consensus 227 ~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~ 270 (423)
T PRK04837 227 GHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEE 270 (423)
T ss_pred CCceeEEEEeCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHH
Confidence 56788888877778899999999988878899999999988763
No 18
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.2e-34 Score=233.61 Aligned_cols=200 Identities=32% Similarity=0.528 Sum_probs=169.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
||||+|||||||.|+|+.+++|.+.+.=|-.+.+.||.....+...| .+|++|||||||||.+++.+..++.+++++|+
T Consensus 213 ~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARL-RKGiNILIgTPGRLvDHLknT~~i~~s~LRwl 291 (708)
T KOG0348|consen 213 YALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARL-RKGINILIGTPGRLVDHLKNTKSIKFSRLRWL 291 (708)
T ss_pred eEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHH-hcCceEEEcCchHHHHHHhccchheeeeeeEE
Confidence 69999999999999999999998877567778899999988888888 57999999999999999999889999999999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCC-------------CCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCccccc--
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLP-------------KLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHH-- 145 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~-------------~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~-- 145 (203)
|+||+|++++.||.+++..|+..+. ...|.+++|||+++.|.++++.-+.||+.|..+.....-.
T Consensus 292 VlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~ 371 (708)
T KOG0348|consen 292 VLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPK 371 (708)
T ss_pred EecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcc
Confidence 9999999999999999999998872 2368999999999999999999999999998433211000
Q ss_pred ------c--cchhhhhccCCCCCceeEEEEEcCCCCcHHHHHHHHhc----CCCCeEEEEeccCCccc
Q 028826 146 ------A--SASSQQLASSKTPLGLHLEYLECESDKKPSQLVDLLIK----NKSKKIIMYVQHGNFSE 201 (203)
Q Consensus 146 ------~--~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~----~~~~~~lIF~ns~~~~e 201 (203)
. .+.....+....|+++.|+|..++.+-+.-.|..+|.. ...+++|||.++.+.+|
T Consensus 372 ~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~Ve 439 (708)
T KOG0348|consen 372 DKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVE 439 (708)
T ss_pred hhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHH
Confidence 0 01112235578899999999999999999888888863 45679999999987765
No 19
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7e-33 Score=228.55 Aligned_cols=183 Identities=36% Similarity=0.553 Sum_probs=167.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
.+||++||||||.|++++++++.-.. .++++..+||.+...+.+.+ .+++||+|+||+||.+++.. +.+.+++++++
T Consensus 154 ~~lIlapTReL~~Qi~nea~k~~~~s-~~~~~~~ygg~~~~~q~~~~-~~gcdIlvaTpGrL~d~~e~-g~i~l~~~k~~ 230 (482)
T KOG0335|consen 154 RALILAPTRELVDQIYNEARKFSYLS-GMKSVVVYGGTDLGAQLRFI-KRGCDILVATPGRLKDLIER-GKISLDNCKFL 230 (482)
T ss_pred ceEEEeCcHHHhhHHHHHHHhhcccc-cceeeeeeCCcchhhhhhhh-ccCccEEEecCchhhhhhhc-ceeehhhCcEE
Confidence 37999999999999999999997665 89999999999998888888 57999999999999999999 99999999999
Q ss_pred EEcchhHhhh-hchHHHHHHHHHhCC----CCCcEEEEeeecChhHHHHHHhcCCC-CeEEEeccCcccccccchhhhhc
Q 028826 81 VLDEADRLLD-MGFQKQISYIISRLP----KLRRTGLFSATQTEAVEELSKAGLRN-PVRIEVRAESKSHHASASSQQLA 154 (203)
Q Consensus 81 ViDEad~l~~-~~~~~~~~~il~~~~----~~~q~i~~SAT~~~~v~~~~~~~l~~-~~~i~~~~~~~~~~~~~~~~~~~ 154 (203)
|+||||+|+| .+|.+++++|+.... .++|.++||||+|..+..++..++.+ +..+.+...
T Consensus 231 vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rv-------------- 296 (482)
T KOG0335|consen 231 VLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRV-------------- 296 (482)
T ss_pred EecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeee--------------
Confidence 9999999999 899999999999885 47899999999999999999999997 888888887
Q ss_pred cCCCCCceeEEEEEcCCCCcHHHHHHHHhcCC---------CCeEEEEeccCCccc
Q 028826 155 SSKTPLGLHLEYLECESDKKPSQLVDLLIKNK---------SKKIIMYVQHGNFSE 201 (203)
Q Consensus 155 ~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~---------~~~~lIF~ns~~~~e 201 (203)
.....++.|.+.++.+.+|...|+++|.... +++++|||++++.|.
T Consensus 297 -g~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d 351 (482)
T KOG0335|consen 297 -GSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGAD 351 (482)
T ss_pred -ccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhh
Confidence 6789999999999999999999999997432 238999999998774
No 20
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2.1e-32 Score=232.47 Aligned_cols=183 Identities=31% Similarity=0.556 Sum_probs=167.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
.+|||+||||||.|+.+.++++.... ++++..++||.+...+...+ ..+++|+|+||++|++++.. +.++++++++|
T Consensus 77 ~aLil~PtreLa~Qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l-~~~~~IiV~TP~rL~~~~~~-~~~~l~~v~~l 153 (456)
T PRK10590 77 RALILTPTRELAAQIGENVRDYSKYL-NIRSLVVFGGVSINPQMMKL-RGGVDVLVATPGRLLDLEHQ-NAVKLDQVEIL 153 (456)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccC-CCEEEEEECCcCHHHHHHHH-cCCCcEEEEChHHHHHHHHc-CCcccccceEE
Confidence 38999999999999999999998887 89999999999988887777 56899999999999999988 78899999999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCCC
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPL 160 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (203)
|+||||+|++++|...++.++..++...|+++||||+++++..++.+++.++..+.+... .....
T Consensus 154 ViDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~---------------~~~~~ 218 (456)
T PRK10590 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR---------------NTASE 218 (456)
T ss_pred EeecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecc---------------ccccc
Confidence 999999999999999999999999999999999999999999999999999998887665 45667
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCeEEEEeccCCccc
Q 028826 161 GLHLEYLECESDKKPSQLVDLLIKNKSKKIIMYVQHGNFSE 201 (203)
Q Consensus 161 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~ns~~~~e 201 (203)
++.+++..++...|...+..++.....+++|||||+++.|+
T Consensus 219 ~i~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~ 259 (456)
T PRK10590 219 QVTQHVHFVDKKRKRELLSQMIGKGNWQQVLVFTRTKHGAN 259 (456)
T ss_pred ceeEEEEEcCHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHH
Confidence 88899988888889999999998888889999999998775
No 21
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-33 Score=214.62 Aligned_cols=182 Identities=26% Similarity=0.462 Sum_probs=171.0
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
+|++|.|||||.||.++..++++++|++++..++||...+.+...+. +-|+|+||||+|++.+.++ +.+++++++.+|
T Consensus 113 vlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk-~~PhivVgTPGrilALvr~-k~l~lk~vkhFv 190 (387)
T KOG0329|consen 113 VLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLK-NCPHIVVGTPGRILALVRN-RSLNLKNVKHFV 190 (387)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHh-CCCeEEEcCcHHHHHHHHh-ccCchhhcceee
Confidence 68999999999999999999999999999999999999998888885 4899999999999999999 999999999999
Q ss_pred EcchhHhhhh-chHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCCC
Q 028826 82 LDEADRLLDM-GFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPL 160 (203)
Q Consensus 82 iDEad~l~~~-~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (203)
+||+|.|+++ ..+.++..|.+..|...|+.+||||++++++...++++.+|..+.++.+. ..+.-
T Consensus 191 lDEcdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~--------------KLtLH 256 (387)
T KOG0329|consen 191 LDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEA--------------KLTLH 256 (387)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchh--------------hhhhh
Confidence 9999999964 58999999999999999999999999999999999999999999998875 45778
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCeEEEEeccCCc
Q 028826 161 GLHLEYLECESDKKPSQLVDLLIKNKSKKIIMYVQHGNF 199 (203)
Q Consensus 161 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~ns~~~ 199 (203)
+++|+|..+.+.+|...+.++|......+++||+.|.++
T Consensus 257 GLqQ~YvkLke~eKNrkl~dLLd~LeFNQVvIFvKsv~R 295 (387)
T KOG0329|consen 257 GLQQYYVKLKENEKNRKLNDLLDVLEFNQVVIFVKSVQR 295 (387)
T ss_pred hHHHHHHhhhhhhhhhhhhhhhhhhhhcceeEeeehhhh
Confidence 899999999999999999999999999999999998765
No 22
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4e-32 Score=235.49 Aligned_cols=185 Identities=32% Similarity=0.546 Sum_probs=165.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
++|||+||||||.|+++.+.+++... ++++..++||.+...+...+ ..++||||+||++|++++...+.++++++++|
T Consensus 86 raLIl~PTreLa~Qi~~~~~~l~~~~-~i~v~~l~Gg~~~~~q~~~l-~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~l 163 (572)
T PRK04537 86 RALILAPTRELAIQIHKDAVKFGADL-GLRFALVYGGVDYDKQRELL-QQGVDVIIATPGRLIDYVKQHKVVSLHACEIC 163 (572)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHH-hCCCCEEEECHHHHHHHHHhccccchhheeee
Confidence 48999999999999999999998887 89999999999988887777 56799999999999999987345789999999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCCC--CCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCC
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLPK--LRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKT 158 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~~--~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (203)
||||||.|++++|..++..++..++. .+|+++||||++..+..+...++.++..+.+... ...
T Consensus 164 ViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~---------------~~~ 228 (572)
T PRK04537 164 VLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETE---------------TIT 228 (572)
T ss_pred EecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccc---------------ccc
Confidence 99999999999999999999999986 7899999999999999999999999887776555 345
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCeEEEEeccCCcccC
Q 028826 159 PLGLHLEYLECESDKKPSQLVDLLIKNKSKKIIMYVQHGNFSED 202 (203)
Q Consensus 159 ~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~ns~~~~e~ 202 (203)
...+.|.++.+...+|...|..++......++||||||++.|++
T Consensus 229 ~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~ 272 (572)
T PRK04537 229 AARVRQRIYFPADEEKQTLLLGLLSRSEGARTMVFVNTKAFVER 272 (572)
T ss_pred ccceeEEEEecCHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHH
Confidence 67788998888888999999999998888899999999988763
No 23
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=2.2e-31 Score=229.10 Aligned_cols=182 Identities=28% Similarity=0.486 Sum_probs=162.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
.||||+||||||.|++++++.++... ++++..++||.....+...+ ..+++|+|+||++|.+++.. +.+.+++++++
T Consensus 198 ~aLIL~PTreLa~Qi~~~~~~l~~~~-~~~~~~~~gG~~~~~q~~~l-~~~~~IiV~TPgrL~~~l~~-~~~~l~~v~~l 274 (518)
T PLN00206 198 LAMVLTPTRELCVQVEDQAKVLGKGL-PFKTALVVGGDAMPQQLYRI-QQGVELIVGTPGRLIDLLSK-HDIELDNVSVL 274 (518)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCC-CceEEEEECCcchHHHHHHh-cCCCCEEEECHHHHHHHHHc-CCccchheeEE
Confidence 48999999999999999999998887 79999999999988888777 56899999999999999998 78899999999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCCC
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPL 160 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (203)
|+||||+|+++||++.+..++..++ .+|+++||||+++++..+++.++.++..+.+... .....
T Consensus 275 ViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~---------------~~~~~ 338 (518)
T PLN00206 275 VLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNP---------------NRPNK 338 (518)
T ss_pred EeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCC---------------CCCCc
Confidence 9999999999999999999999985 6899999999999999999999999998888765 44556
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCC--CCeEEEEeccCCccc
Q 028826 161 GLHLEYLECESDKKPSQLVDLLIKNK--SKKIIMYVQHGNFSE 201 (203)
Q Consensus 161 ~i~~~~~~~~~~~k~~~l~~ll~~~~--~~~~lIF~ns~~~~e 201 (203)
.+.+.+..++..+|...|.+++.... .+++||||||+..|+
T Consensus 339 ~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~ 381 (518)
T PLN00206 339 AVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGAD 381 (518)
T ss_pred ceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHH
Confidence 78888888988889999999997543 368999999998775
No 24
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-32 Score=218.05 Aligned_cols=182 Identities=31% Similarity=0.532 Sum_probs=170.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
+||+++||||||+|+..+.+.++... ++++..+.||.....+...+....++|+||||+|+.++++. +.+....++++
T Consensus 96 qalilaPtreLa~qi~~v~~~lg~~~-~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~-~~l~~~~iKmf 173 (397)
T KOG0327|consen 96 QALILAPTRELAQQIQKVVRALGDHM-DVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNR-GSLSTDGIKMF 173 (397)
T ss_pred HHHHhcchHHHHHHHHHHHHhhhccc-ceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhcc-ccccccceeEE
Confidence 57899999999999999999999887 89999999999988777777677899999999999999999 78889999999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCCC
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPL 160 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (203)
|+||||.|++.||.+.+..+++++|++.|++++|||+|+++....++++++|+.+.+... ..+..
T Consensus 174 vlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~---------------~ltl~ 238 (397)
T KOG0327|consen 174 VLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKD---------------ELTLE 238 (397)
T ss_pred eecchHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecch---------------hhhhh
Confidence 999999999999999999999999999999999999999999999999999999999888 46789
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCeEEEEeccCCccc
Q 028826 161 GLHLEYLECESDKKPSQLVDLLIKNKSKKIIMYVQHGNFSE 201 (203)
Q Consensus 161 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~ns~~~~e 201 (203)
.++|+|..+.+++|...|.++.+ ..++.+||||+++.+.
T Consensus 239 gikq~~i~v~k~~k~~~l~dl~~--~~~q~~if~nt~r~v~ 277 (397)
T KOG0327|consen 239 GIKQFYINVEKEEKLDTLCDLYR--RVTQAVIFCNTRRKVD 277 (397)
T ss_pred heeeeeeeccccccccHHHHHHH--hhhcceEEecchhhHH
Confidence 99999999999999999999999 6679999999998754
No 25
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.98 E-value=3.8e-31 Score=225.91 Aligned_cols=185 Identities=31% Similarity=0.490 Sum_probs=166.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
++|||+||||||.|+++.++.+.+.. ++++..++||.+...+.+.+..++++|+|+||++|+.+... +...+++++++
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~-~~~~l~~l~~l 241 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYT-GLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQR-GEVHLDMVEVM 241 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccC-CCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHc-CCcccccCceE
Confidence 47999999999999999999998877 89999999999988888887667899999999999999887 78889999999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCCC--CCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCC
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLPK--LRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKT 158 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~~--~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (203)
||||+|.+++.+|...++++++.++. .+|++++|||++.++..+++.++.++..+.+... ...
T Consensus 242 ViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~---------------~~~ 306 (475)
T PRK01297 242 VLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPE---------------NVA 306 (475)
T ss_pred EechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccC---------------cCC
Confidence 99999999999999999999999864 5799999999999999999999999998888766 345
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCeEEEEeccCCcccC
Q 028826 159 PLGLHLEYLECESDKKPSQLVDLLIKNKSKKIIMYVQHGNFSED 202 (203)
Q Consensus 159 ~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~ns~~~~e~ 202 (203)
..++.+.++.+...+|...|..++.....+++|||||+++.|+.
T Consensus 307 ~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~ 350 (475)
T PRK01297 307 SDTVEQHVYAVAGSDKYKLLYNLVTQNPWERVMVFANRKDEVRR 350 (475)
T ss_pred CCcccEEEEEecchhHHHHHHHHHHhcCCCeEEEEeCCHHHHHH
Confidence 56677888888888999999999998888899999999988763
No 26
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.97 E-value=1.7e-30 Score=219.70 Aligned_cols=183 Identities=29% Similarity=0.485 Sum_probs=164.3
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
+||++||+|||.|+++.++.++... ++++..++||.....+...+ ..+++|+|+||++|++++.. +.+++++++++|
T Consensus 76 ~lil~Pt~eLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l-~~~~~IlV~Tp~rl~~~~~~-~~~~~~~v~~lV 152 (434)
T PRK11192 76 ILILTPTRELAMQVADQARELAKHT-HLDIATITGGVAYMNHAEVF-SENQDIVVATPGRLLQYIKE-ENFDCRAVETLI 152 (434)
T ss_pred EEEECCcHHHHHHHHHHHHHHHccC-CcEEEEEECCCCHHHHHHHh-cCCCCEEEEChHHHHHHHHc-CCcCcccCCEEE
Confidence 7999999999999999999999887 89999999999988877766 56899999999999999988 888999999999
Q ss_pred EcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecCh-hHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCCC
Q 028826 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE-AVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPL 160 (203)
Q Consensus 82 iDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~-~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (203)
+||||+|++++|...+..+...++...|+++||||++. .+..+.+.++.++..+..... .....
T Consensus 153 iDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~---------------~~~~~ 217 (434)
T PRK11192 153 LDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPS---------------RRERK 217 (434)
T ss_pred EECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCC---------------ccccc
Confidence 99999999999999999999999999999999999985 588899999999998888766 45667
Q ss_pred ceeEEEEEcCC-CCcHHHHHHHHhcCCCCeEEEEeccCCcccC
Q 028826 161 GLHLEYLECES-DKKPSQLVDLLIKNKSKKIIMYVQHGNFSED 202 (203)
Q Consensus 161 ~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~ns~~~~e~ 202 (203)
++.++++.++. ..|...|..+++.....++|||||+++.|++
T Consensus 218 ~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~ 260 (434)
T PRK11192 218 KIHQWYYRADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHE 260 (434)
T ss_pred CceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHH
Confidence 78888888765 6789999999988778899999999988763
No 27
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=6.8e-31 Score=211.16 Aligned_cols=183 Identities=28% Similarity=0.445 Sum_probs=165.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
..|+++||||||.|+.-++.+++-+ +++.++++||....++...+ +++.+|+|+||+||.++... +.+++.++.++
T Consensus 296 ~~lvl~ptreLalqie~e~~kysyn--g~ksvc~ygggnR~eqie~l-krgveiiiatPgrlndL~~~-n~i~l~siTYl 371 (629)
T KOG0336|consen 296 GVLVLTPTRELALQIEGEVKKYSYN--GLKSVCVYGGGNRNEQIEDL-KRGVEIIIATPGRLNDLQMD-NVINLASITYL 371 (629)
T ss_pred ceEEEeccHHHHHHHHhHHhHhhhc--CcceEEEecCCCchhHHHHH-hcCceEEeeCCchHhhhhhc-CeeeeeeeEEE
Confidence 3689999999999999999999655 89999999999999999999 67999999999999999998 99999999999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCCC
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPL 160 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (203)
|+||||+|++.||.+.++.|+--+.+.+|+++.|||+|+.|..++..|+++|..+.+..-. .....
T Consensus 372 VlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLd--------------L~a~~ 437 (629)
T KOG0336|consen 372 VLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLD--------------LVAVK 437 (629)
T ss_pred EecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccc--------------eeeee
Confidence 9999999999999999999999999999999999999999999999999999999987752 33456
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcC-CCCeEEEEeccCCccc
Q 028826 161 GLHLEYLECESDKKPSQLVDLLIKN-KSKKIIMYVQHGNFSE 201 (203)
Q Consensus 161 ~i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lIF~ns~~~~e 201 (203)
+++|.++.-.+.+|...+..++... ...++||||.++..|+
T Consensus 438 sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD 479 (629)
T KOG0336|consen 438 SVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMAD 479 (629)
T ss_pred eeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhh
Confidence 7888887667778888888888754 5679999999987765
No 28
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.6e-31 Score=215.00 Aligned_cols=182 Identities=35% Similarity=0.552 Sum_probs=170.5
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
|+|++||||||.|+.++.+.++.+. ++++.+++||.+.+++...+ ..+||||++||+++.++.-. -.+.++.+.++|
T Consensus 93 alilsptreLa~qtlkvvkdlgrgt-~lr~s~~~ggD~~eeqf~~l-~~npDii~ATpgr~~h~~ve-m~l~l~sveyVV 169 (529)
T KOG0337|consen 93 ALILSPTRELALQTLKVVKDLGRGT-KLRQSLLVGGDSIEEQFILL-NENPDIIIATPGRLLHLGVE-MTLTLSSVEYVV 169 (529)
T ss_pred eeeccCcHHHHHHHHHHHHHhcccc-chhhhhhcccchHHHHHHHh-ccCCCEEEecCceeeeeehh-eeccccceeeee
Confidence 7999999999999999999999988 89999999999999999988 57899999999999988877 558999999999
Q ss_pred EcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCCCc
Q 028826 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLG 161 (203)
Q Consensus 82 iDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (203)
+||||.+++.||.+.+..++..+|.++|+++||||+|..+-++++..+.+|..+.++.+ ....+.
T Consensus 170 fdEadrlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldve---------------tkise~ 234 (529)
T KOG0337|consen 170 FDEADRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVE---------------TKISEL 234 (529)
T ss_pred ehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehh---------------hhcchh
Confidence 99999999999999999999999999999999999999999999999999999998888 678899
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC-CCCeEEEEeccCCccc
Q 028826 162 LHLEYLECESDKKPSQLVDLLIKN-KSKKIIMYVQHGNFSE 201 (203)
Q Consensus 162 i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lIF~ns~~~~e 201 (203)
++..|..+.+.+|...|+.++... ..++++|||.|+.-+|
T Consensus 235 lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve 275 (529)
T KOG0337|consen 235 LKVRFFRVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVE 275 (529)
T ss_pred hhhheeeeccHHHHHHHHHHHhccccccceeEEecccchHH
Confidence 999999999999999999999865 4578999999987665
No 29
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.97 E-value=2.7e-32 Score=218.05 Aligned_cols=183 Identities=30% Similarity=0.560 Sum_probs=163.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhh-----cCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCC
Q 028826 1 MGMIISPTRELSAQIYHVAQPFIS-----TLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFR 75 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~-----~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~ 75 (203)
++||+||+||||.|+++.+..+.. .+|.+|+..+.||.+..++...+ ..+.||+|+||+||.+++.. +.+++.
T Consensus 248 ~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v-~~GvHivVATPGRL~DmL~K-K~~sLd 325 (610)
T KOG0341|consen 248 YGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVV-RRGVHIVVATPGRLMDMLAK-KIMSLD 325 (610)
T ss_pred eeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHH-hcCeeEEEcCcchHHHHHHH-hhccHH
Confidence 589999999999999999999875 45789999999999999998888 67999999999999999998 889999
Q ss_pred CccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhcc
Q 028826 76 NLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLAS 155 (203)
Q Consensus 76 ~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~ 155 (203)
-++++.+||||+|++.||.++++.++..+...+|+++||||+|..+..|++.-+-.|+.+.+...+
T Consensus 326 ~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAG-------------- 391 (610)
T KOG0341|consen 326 ACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAG-------------- 391 (610)
T ss_pred HHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEeccccc--------------
Confidence 999999999999999999999999999999999999999999999999999999999999998873
Q ss_pred CCCCCceeEEEEEcCCCCcHHHHHHHHhcCCCCeEEEEeccCCccc
Q 028826 156 SKTPLGLHLEYLECESDKKPSQLVDLLIKNKSKKIIMYVQHGNFSE 201 (203)
Q Consensus 156 ~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~ns~~~~e 201 (203)
...-++-|.+-++..+.|+-.|++-|.+.. .|++|||..+.+++
T Consensus 392 -AAsldViQevEyVkqEaKiVylLeCLQKT~-PpVLIFaEkK~DVD 435 (610)
T KOG0341|consen 392 -AASLDVIQEVEYVKQEAKIVYLLECLQKTS-PPVLIFAEKKADVD 435 (610)
T ss_pred -ccchhHHHHHHHHHhhhhhhhHHHHhccCC-CceEEEeccccChH
Confidence 344455566666778888888888886654 48999999988764
No 30
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.5e-30 Score=205.54 Aligned_cols=184 Identities=30% Similarity=0.411 Sum_probs=163.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhC---CCccCCCc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM---DVLDFRNL 77 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~---~~~~l~~v 77 (203)
||+|++||||||.|+.+++..+++.. ++++..++||.+.-.+...| ..+||++|+||||+.+++..+ ..+.++++
T Consensus 77 FalvlTPTrELA~QiaEQF~alGk~l-~lK~~vivGG~d~i~qa~~L-~~rPHvVvatPGRlad~l~sn~~~~~~~~~rl 154 (442)
T KOG0340|consen 77 FALVLTPTRELALQIAEQFIALGKLL-NLKVSVIVGGTDMIMQAAIL-SDRPHVVVATPGRLADHLSSNLGVCSWIFQRL 154 (442)
T ss_pred eEEEecchHHHHHHHHHHHHHhcccc-cceEEEEEccHHHhhhhhhc-ccCCCeEecCccccccccccCCccchhhhhce
Confidence 79999999999999999999999888 99999999999988887777 678999999999999999874 34568999
Q ss_pred cEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCC--CeEEEeccCcccccccchhhhhcc
Q 028826 78 VILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRN--PVRIEVRAESKSHHASASSQQLAS 155 (203)
Q Consensus 78 ~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~--~~~i~~~~~~~~~~~~~~~~~~~~ 155 (203)
+++|+||||.+++.+|-+.+.-+.+.+|..+|+++||||+++.+.++..-.... ........+
T Consensus 155 kflVlDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~--------------- 219 (442)
T KOG0340|consen 155 KFLVLDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDG--------------- 219 (442)
T ss_pred eeEEecchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCC---------------
Confidence 999999999999999999999999999999999999999999999888766665 444444444
Q ss_pred CCCCCceeEEEEEcCCCCcHHHHHHHHhcCC---CCeEEEEeccCCccc
Q 028826 156 SKTPLGLHLEYLECESDKKPSQLVDLLIKNK---SKKIIMYVQHGNFSE 201 (203)
Q Consensus 156 ~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~---~~~~lIF~ns~~~~e 201 (203)
...++.+.|.|+.|+..-|-..|..+|+... .+.++||+|+...|+
T Consensus 220 vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ 268 (442)
T KOG0340|consen 220 VSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQ 268 (442)
T ss_pred CCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHH
Confidence 6788999999999999999999999998553 568999999988776
No 31
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.6e-30 Score=215.10 Aligned_cols=182 Identities=25% Similarity=0.459 Sum_probs=153.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCC--ccCCCcc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV--LDFRNLV 78 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~--~~l~~v~ 78 (203)
+|||++||||||.|+.+.+..++++. ++++..++||.+...|.+.| +..|||+|+|||||+.++...+. -++++++
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t-~i~v~si~GGLavqKQqRlL-~~~p~IVVATPGRlweli~e~n~~l~~~k~vk 342 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKT-QIRVASITGGLAVQKQQRLL-NQRPDIVVATPGRLWELIEEDNTHLGNFKKVK 342 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhcccc-CeEEEEeechhHHHHHHHHH-hcCCCEEEecchHHHHHHHhhhhhhhhhhhce
Confidence 58999999999999999999998876 99999999999999999888 55899999999999999998322 2588999
Q ss_pred EEEEcchhHhhhhchHHHHHHHHHhCC-----CCCcEEEEeeecCh---------------------hHHHHHHh--cCC
Q 028826 79 ILVLDEADRLLDMGFQKQISYIISRLP-----KLRRTGLFSATQTE---------------------AVEELSKA--GLR 130 (203)
Q Consensus 79 ~lViDEad~l~~~~~~~~~~~il~~~~-----~~~q~i~~SAT~~~---------------------~v~~~~~~--~l~ 130 (203)
++|+||+|+|++.|+.+.+..|+..+. ..+|+++||||++- .++.++++ +..
T Consensus 343 cLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~ 422 (731)
T KOG0347|consen 343 CLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRG 422 (731)
T ss_pred EEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccC
Confidence 999999999999999999999998885 46799999999752 23344443 233
Q ss_pred CCeEEEeccCcccccccchhhhhccCCCCCceeEEEEEcCCCCcHHHHHHHHhcCCCCeEEEEeccCCcc
Q 028826 131 NPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPSQLVDLLIKNKSKKIIMYVQHGNFS 200 (203)
Q Consensus 131 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~ns~~~~ 200 (203)
.|.+|..++. ......+....+.|+..+|--.|+.+|..+++ ++|||||+-..+
T Consensus 423 kpkiiD~t~q---------------~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPG-rTlVF~NsId~v 476 (731)
T KOG0347|consen 423 KPKIIDLTPQ---------------SATASTLTESLIECPPLEKDLYLYYFLTRYPG-RTLVFCNSIDCV 476 (731)
T ss_pred CCeeEecCcc---------------hhHHHHHHHHhhcCCccccceeEEEEEeecCC-ceEEEechHHHH
Confidence 6788888887 55677788888889999999899988888874 899999996544
No 32
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.96 E-value=1.7e-29 Score=221.81 Aligned_cols=184 Identities=33% Similarity=0.547 Sum_probs=165.7
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhC--CCccCCCcc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM--DVLDFRNLV 78 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~--~~~~l~~v~ 78 (203)
+|||++||||||.||++++++|+... ++++++++||....+++..+. .++.|+|+||+|.++++-.. +..++.++.
T Consensus 440 i~li~aPtrela~QI~r~~~kf~k~l-~ir~v~vygg~~~~~qiaelk-Rg~eIvV~tpGRmiD~l~~n~grvtnlrR~t 517 (997)
T KOG0334|consen 440 IALILAPTRELAMQIHREVRKFLKLL-GIRVVCVYGGSGISQQIAELK-RGAEIVVCTPGRMIDILCANSGRVTNLRRVT 517 (997)
T ss_pred eEEEEcCCHHHHHHHHHHHHHHHhhc-CceEEEecCCccHHHHHHHHh-cCCceEEeccchhhhhHhhcCCccccccccc
Confidence 48999999999999999999999997 999999999999999999995 56999999999999988761 234566667
Q ss_pred EEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCC
Q 028826 79 ILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKT 158 (203)
Q Consensus 79 ~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (203)
++|+||||+|++.||.+.+..|+..++..+|+++||||+|..++.+++..+..|+.+.+... ...
T Consensus 518 ~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~---------------svV 582 (997)
T KOG0334|consen 518 YLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGR---------------SVV 582 (997)
T ss_pred eeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccc---------------eeE
Confidence 99999999999999999999999999999999999999999999999999999999888766 567
Q ss_pred CCceeEEEEEcC-CCCcHHHHHHHHhcC-CCCeEEEEeccCCccc
Q 028826 159 PLGLHLEYLECE-SDKKPSQLVDLLIKN-KSKKIIMYVQHGNFSE 201 (203)
Q Consensus 159 ~~~i~~~~~~~~-~~~k~~~l~~ll~~~-~~~~~lIF~ns~~~~e 201 (203)
...+++.+..|+ +.+|+..|..||... ...++||||.+...|.
T Consensus 583 ~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d 627 (997)
T KOG0334|consen 583 CKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKAD 627 (997)
T ss_pred eccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHH
Confidence 788999999998 789999999999753 5679999999887764
No 33
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=4.1e-29 Score=204.78 Aligned_cols=189 Identities=26% Similarity=0.402 Sum_probs=167.7
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCC----eEEEeccHHHHHHHHhCCCccCCC
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGA----NLLIGTPGRLYDIMERMDVLDFRN 76 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~----~ilV~Tp~~l~~~~~~~~~~~l~~ 76 (203)
.||||+|||+|+.|+++.+.+++... ++.|+.+.|..+.+.+.++|...++ ||+|+||+||.+++.++.++++++
T Consensus 217 RavVivPtr~L~~QV~~~f~~~~~~t-gL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~ 295 (620)
T KOG0350|consen 217 RAVVIVPTRELALQVYDTFKRLNSGT-GLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKH 295 (620)
T ss_pred EEEEEeeHHHHHHHHHHHHHHhccCC-ceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhh
Confidence 48999999999999999999999988 8999999999999999999987777 999999999999999779999999
Q ss_pred ccEEEEcchhHhhhhchHHHHHHHHHhCCC----------------------------------CCcEEEEeeecChhHH
Q 028826 77 LVILVLDEADRLLDMGFQKQISYIISRLPK----------------------------------LRRTGLFSATQTEAVE 122 (203)
Q Consensus 77 v~~lViDEad~l~~~~~~~~~~~il~~~~~----------------------------------~~q~i~~SAT~~~~v~ 122 (203)
++++||||||+|++..|.+++..++..+.. ..+.++||||++....
T Consensus 296 LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~ 375 (620)
T KOG0350|consen 296 LRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPS 375 (620)
T ss_pred ceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChH
Confidence 999999999999999888888877766632 1268899999999989
Q ss_pred HHHHhcCCCCeEEEeccCcccccccchhhhhccCCCCCceeEEEEEcCCCCcHHHHHHHHhcCCCCeEEEEeccCCccc
Q 028826 123 ELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPSQLVDLLIKNKSKKIIMYVQHGNFSE 201 (203)
Q Consensus 123 ~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~ns~~~~e 201 (203)
.+...-+..|..+.+... ..+.++.|+.+.|++..++...|.-.+..+++..+..++|+|+||..++.
T Consensus 376 Kl~~l~l~~Prl~~v~~~-----------~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~ 443 (620)
T KOG0350|consen 376 KLKDLTLHIPRLFHVSKP-----------LIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSAN 443 (620)
T ss_pred HHhhhhcCCCceEEeecc-----------cceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHH
Confidence 999988899977776532 13348899999999999999999999999999999999999999987764
No 34
>PTZ00424 helicase 45; Provisional
Probab=99.96 E-value=1.2e-27 Score=200.47 Aligned_cols=183 Identities=33% Similarity=0.548 Sum_probs=160.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
.+|||+||+||+.|+++.++.++... ++++..+.||.....+...+ ..+++|+|+||+++.+++.. +...+++++++
T Consensus 98 ~~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~Ivv~Tp~~l~~~l~~-~~~~l~~i~lv 174 (401)
T PTZ00424 98 QALILAPTRELAQQIQKVVLALGDYL-KVRCHACVGGTVVRDDINKL-KAGVHMVVGTPGRVYDMIDK-RHLRVDDLKLF 174 (401)
T ss_pred eEEEECCCHHHHHHHHHHHHHHhhhc-CceEEEEECCcCHHHHHHHH-cCCCCEEEECcHHHHHHHHh-CCcccccccEE
Confidence 37999999999999999999998776 78999999998877777666 46789999999999999988 77889999999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCCC
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPL 160 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (203)
|+||+|.+++.+|...+..+++.++...|++++|||+|+.+..+...++.++..+.+... .....
T Consensus 175 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~ 239 (401)
T PTZ00424 175 ILDEADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKD---------------ELTLE 239 (401)
T ss_pred EEecHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCC---------------CcccC
Confidence 999999999999999999999999999999999999999999999999999988776654 34566
Q ss_pred ceeEEEEEcCC-CCcHHHHHHHHhcCCCCeEEEEeccCCccc
Q 028826 161 GLHLEYLECES-DKKPSQLVDLLIKNKSKKIIMYVQHGNFSE 201 (203)
Q Consensus 161 ~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~ns~~~~e 201 (203)
++.+++..++. +.+...+..+++.....++||||||++.|+
T Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~ 281 (401)
T PTZ00424 240 GIRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVD 281 (401)
T ss_pred CceEEEEecChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHH
Confidence 78888877765 457888889888888889999999998775
No 35
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=4.8e-27 Score=186.89 Aligned_cols=181 Identities=28% Similarity=0.408 Sum_probs=161.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
+|+.|+||||||.|+.+++.+.+++. +++..+...|....+- ..+ ..+|+||||+-+.+++...+-++++.++.+
T Consensus 162 Q~iCLaPtrELA~Q~~eVv~eMGKf~-~ita~yair~sk~~rG-~~i---~eqIviGTPGtv~Dlm~klk~id~~kikvf 236 (477)
T KOG0332|consen 162 QCICLAPTRELAPQTGEVVEEMGKFT-ELTASYAIRGSKAKRG-NKL---TEQIVIGTPGTVLDLMLKLKCIDLEKIKVF 236 (477)
T ss_pred CceeeCchHHHHHHHHHHHHHhcCce-eeeEEEEecCcccccC-Ccc---hhheeeCCCccHHHHHHHHHhhChhhceEE
Confidence 57889999999999999999999998 8999998888733211 112 258999999999998877677899999999
Q ss_pred EEcchhHhhh-hchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCC
Q 028826 81 VLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTP 159 (203)
Q Consensus 81 ViDEad~l~~-~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (203)
|+||||.|++ .||.+.-.+|...+|++.|.++||||+...+..|+...++++..+.+..+ ....
T Consensus 237 VlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~e---------------el~L 301 (477)
T KOG0332|consen 237 VLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKRE---------------ELAL 301 (477)
T ss_pred EecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehh---------------hccc
Confidence 9999999996 57999999999999999999999999999999999999999999999888 5688
Q ss_pred CceeEEEEEcCC-CCcHHHHHHHHhcCCCCeEEEEeccCCccc
Q 028826 160 LGLHLEYLECES-DKKPSQLVDLLIKNKSKKIIMYVQHGNFSE 201 (203)
Q Consensus 160 ~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~ns~~~~e 201 (203)
.+++|+|..|.. .+|++.|..++....-+++||||.|+++|+
T Consensus 302 ~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~ 344 (477)
T KOG0332|consen 302 DNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAM 344 (477)
T ss_pred cchhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHH
Confidence 999999999976 589999999998888889999999998874
No 36
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.93 E-value=1e-24 Score=192.63 Aligned_cols=177 Identities=17% Similarity=0.187 Sum_probs=136.6
Q ss_pred EEE-EcCcHHHHHHHHHHHHHhhhcCC----------------------CceEEEEEcCcchHHHHHHHHhCCCeEEEec
Q 028826 2 GMI-ISPTRELSAQIYHVAQPFISTLP----------------------DVKSMLLVGGVEVKADVKKIEEEGANLLIGT 58 (203)
Q Consensus 2 ali-l~PtreLa~Qi~~~~~~l~~~~~----------------------~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~T 58 (203)
+|| ++||||||.|+++.++++++.++ ++++..++||.+...+...+ ..+|+|||||
T Consensus 64 rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l-~~~p~IIVgT 142 (844)
T TIGR02621 64 RLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLD-PHRPAVIVGT 142 (844)
T ss_pred eEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhc-CCCCcEEEEC
Confidence 455 66999999999999999998652 48999999999999898887 5789999999
Q ss_pred cHHHHHHHHhCCCcc----------------CCCccEEEEcchhHhhhhchHHHHHHHHHhC--CCC---CcEEEEeeec
Q 028826 59 PGRLYDIMERMDVLD----------------FRNLVILVLDEADRLLDMGFQKQISYIISRL--PKL---RRTGLFSATQ 117 (203)
Q Consensus 59 p~~l~~~~~~~~~~~----------------l~~v~~lViDEad~l~~~~~~~~~~~il~~~--~~~---~q~i~~SAT~ 117 (203)
+ +++.. +.++ +++++++|+|||| ++.+|.+.+..|++.+ ++. +|+++||||+
T Consensus 143 ~----D~i~s-r~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~ 215 (844)
T TIGR02621 143 V----DMIGS-RLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATS 215 (844)
T ss_pred H----HHHcC-CccccccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCC
Confidence 5 45544 4442 7899999999999 6889999999999975 432 6999999999
Q ss_pred ChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCCCceeEEEEEcCCCCcHHHHHHHH---hcCCCCeEEEEe
Q 028826 118 TEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPSQLVDLL---IKNKSKKIIMYV 194 (203)
Q Consensus 118 ~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll---~~~~~~~~lIF~ 194 (203)
+..+..+...++.++..+.+... .....++.++ +.++.+.|...+...+ .....+++||||
T Consensus 216 p~ei~~l~~~~~~~p~~i~V~~~---------------~l~a~ki~q~-v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~ 279 (844)
T TIGR02621 216 RTDGPDRTTLLSAEDYKHPVLKK---------------RLAAKKIVKL-VPPSDEKFLSTMVKELNLLMKDSGGAILVFC 279 (844)
T ss_pred CccHHHHHHHHccCCceeecccc---------------cccccceEEE-EecChHHHHHHHHHHHHHHHhhCCCcEEEEE
Confidence 99999888888888776666544 3344566664 3445555554444332 123557899999
Q ss_pred ccCCcccC
Q 028826 195 QHGNFSED 202 (203)
Q Consensus 195 ns~~~~e~ 202 (203)
||++.|++
T Consensus 280 NTv~~Aq~ 287 (844)
T TIGR02621 280 RTVKHVRK 287 (844)
T ss_pred CCHHHHHH
Confidence 99998764
No 37
>PRK09401 reverse gyrase; Reviewed
Probab=99.93 E-value=1.8e-24 Score=198.90 Aligned_cols=174 Identities=18% Similarity=0.196 Sum_probs=136.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcch-----HHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCC
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEV-----KADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFR 75 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~-----~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~ 75 (203)
++|||+|||||+.|+++.+++++... ++++..+.||... .++...+.++.++|+|+||++|.+++. .+...
T Consensus 125 ~alIL~PTreLa~Qi~~~l~~l~~~~-~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~---~l~~~ 200 (1176)
T PRK09401 125 KSYIIFPTRLLVEQVVEKLEKFGEKV-GCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD---ELPKK 200 (1176)
T ss_pred eEEEEeccHHHHHHHHHHHHHHhhhc-CceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH---hcccc
Confidence 48999999999999999999999877 7888888877542 233344544679999999999998875 35667
Q ss_pred CccEEEEcchhHhhh-----------hchH-HHHHHHHHhCCC------------------------CCcEEEEeeecCh
Q 028826 76 NLVILVLDEADRLLD-----------MGFQ-KQISYIISRLPK------------------------LRRTGLFSATQTE 119 (203)
Q Consensus 76 ~v~~lViDEad~l~~-----------~~~~-~~~~~il~~~~~------------------------~~q~i~~SAT~~~ 119 (203)
+++++|+||||+|++ .||. +++..+++.++. ..|+++||||+++
T Consensus 201 ~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~ 280 (1176)
T PRK09401 201 KFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRP 280 (1176)
T ss_pred ccCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCc
Confidence 799999999999996 5674 678888877764 6899999999987
Q ss_pred h-HHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCCCceeEEEEEcCCCCcHHHHHHHHhcCCCCeEEEEeccCC
Q 028826 120 A-VEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPSQLVDLLIKNKSKKIIMYVQHGN 198 (203)
Q Consensus 120 ~-v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~ns~~ 198 (203)
. +.. ..++++..+.+... .....++.|.|..++ +|...|..+++..+ .++|||||+++
T Consensus 281 ~~~~~---~l~~~ll~~~v~~~---------------~~~~rnI~~~yi~~~--~k~~~L~~ll~~l~-~~~LIFv~t~~ 339 (1176)
T PRK09401 281 RGNRV---KLFRELLGFEVGSP---------------VFYLRNIVDSYIVDE--DSVEKLVELVKRLG-DGGLIFVPSDK 339 (1176)
T ss_pred cchHH---HHhhccceEEecCc---------------ccccCCceEEEEEcc--cHHHHHHHHHHhcC-CCEEEEEeccc
Confidence 5 332 23345555666554 346688999998766 78888999998765 57999999988
Q ss_pred c
Q 028826 199 F 199 (203)
Q Consensus 199 ~ 199 (203)
.
T Consensus 340 ~ 340 (1176)
T PRK09401 340 G 340 (1176)
T ss_pred C
Confidence 7
No 38
>PRK14701 reverse gyrase; Provisional
Probab=99.90 E-value=6.9e-23 Score=192.36 Aligned_cols=179 Identities=22% Similarity=0.216 Sum_probs=136.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCC-CceEEEEEcCcchHHHHH---HHHhCCCeEEEeccHHHHHHHHhCCCccCCC
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLP-DVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRN 76 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~-~i~~~~~~~g~~~~~~~~---~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~ 76 (203)
++|||+||+||+.|+++.++.++.... ++++..++||.+..++.. .+.++.++|+|+||++|.+++.. ... .+
T Consensus 124 ~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~--l~~-~~ 200 (1638)
T PRK14701 124 KCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPE--MKH-LK 200 (1638)
T ss_pred eEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHH--Hhh-CC
Confidence 489999999999999999999987652 578888999988776643 34445699999999999987764 222 78
Q ss_pred ccEEEEcchhHhhh-----------hchHHHHHH----HHH----------------------hCCCCCc-EEEEeeecC
Q 028826 77 LVILVLDEADRLLD-----------MGFQKQISY----IIS----------------------RLPKLRR-TGLFSATQT 118 (203)
Q Consensus 77 v~~lViDEad~l~~-----------~~~~~~~~~----il~----------------------~~~~~~q-~i~~SAT~~ 118 (203)
++++|+||||+|++ .||.+++.. ++. .+++.+| .++||||++
T Consensus 201 i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~ 280 (1638)
T PRK14701 201 FDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGK 280 (1638)
T ss_pred CCEEEEECceeccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCC
Confidence 99999999999987 378877764 332 3455666 577999999
Q ss_pred hhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCCCceeEEEEEcCCCCcHHHHHHHHhcCCCCeEEEEeccCC
Q 028826 119 EAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPSQLVDLLIKNKSKKIIMYVQHGN 198 (203)
Q Consensus 119 ~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~ns~~ 198 (203)
+.-. . ..+++++..+.+... .....++.|.|..++..+| ..|.++++.. ++++||||||++
T Consensus 281 ~r~~-~-~~l~~~~l~f~v~~~---------------~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~-g~~gIVF~~t~~ 341 (1638)
T PRK14701 281 AKGD-R-VKLYRELLGFEVGSG---------------RSALRNIVDVYLNPEKIIK-EHVRELLKKL-GKGGLIFVPIDE 341 (1638)
T ss_pred chhH-H-HHHhhcCeEEEecCC---------------CCCCCCcEEEEEECCHHHH-HHHHHHHHhC-CCCeEEEEeccc
Confidence 6411 1 234467777777666 4577889999987765555 6788888876 468999999998
Q ss_pred ccc
Q 028826 199 FSE 201 (203)
Q Consensus 199 ~~e 201 (203)
.+|
T Consensus 342 ~~e 344 (1638)
T PRK14701 342 GAE 344 (1638)
T ss_pred cch
Confidence 764
No 39
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.90 E-value=7.6e-23 Score=182.09 Aligned_cols=177 Identities=18% Similarity=0.220 Sum_probs=121.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHH-hCC--CccCCCc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIME-RMD--VLDFRNL 77 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~-~~~--~~~l~~v 77 (203)
.||||+||||||.|+...+++++ . .++++..+.|+... ++...+ ..+++|+|+||+++...+- ... ...++++
T Consensus 83 ~aL~l~PtraLa~q~~~~l~~l~-~-~~i~v~~~~Gdt~~-~~r~~i-~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l 158 (742)
T TIGR03817 83 TALYLAPTKALAADQLRAVRELT-L-RGVRPATYDGDTPT-EERRWA-REHARYVLTNPDMLHRGILPSHARWARFLRRL 158 (742)
T ss_pred EEEEEcChHHHHHHHHHHHHHhc-c-CCeEEEEEeCCCCH-HHHHHH-hcCCCEEEEChHHHHHhhccchhHHHHHHhcC
Confidence 48999999999999999999997 3 37888887777664 344555 4579999999999874322 101 1237899
Q ss_pred cEEEEcchhHhhhhchHHHHHHHHH-------hCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchh
Q 028826 78 VILVLDEADRLLDMGFQKQISYIIS-------RLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASS 150 (203)
Q Consensus 78 ~~lViDEad~l~~~~~~~~~~~il~-------~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~ 150 (203)
+++|+||||.|.+ .|...+..+++ ..+..+|++++|||+++..+ +++.++..+..+ +..+
T Consensus 159 ~~vViDEah~~~g-~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~---------- 225 (742)
T TIGR03817 159 RYVVIDECHSYRG-VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTED---------- 225 (742)
T ss_pred CEEEEeChhhccC-ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCC----------
Confidence 9999999999865 35555444443 34677899999999998855 567777777544 3322
Q ss_pred hhhccCCCCCceeEEEEEcCC-----------------CCcHHHHHHHHhcCCCCeEEEEeccCCcccC
Q 028826 151 QQLASSKTPLGLHLEYLECES-----------------DKKPSQLVDLLIKNKSKKIIMYVQHGNFSED 202 (203)
Q Consensus 151 ~~~~~~~~~~~i~~~~~~~~~-----------------~~k~~~l~~ll~~~~~~~~lIF~ns~~~~e~ 202 (203)
..+....+..++.+. .++...+..+++. ..++||||||++.||.
T Consensus 226 ------~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~ 286 (742)
T TIGR03817 226 ------GSPRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVAE--GARTLTFVRSRRGAEL 286 (742)
T ss_pred ------CCCcCceEEEEecCCccccccccccccccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHH
Confidence 112222222222221 1355667777764 4699999999998873
No 40
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.90 E-value=1.8e-22 Score=187.20 Aligned_cols=133 Identities=17% Similarity=0.197 Sum_probs=104.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhh-----------hcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhC
Q 028826 1 MGMIISPTRELSAQIYHVAQPFI-----------STLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM 69 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~-----------~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~ 69 (203)
.+|||+|+|||++|+++.++... ....++++...+|+.+..++.+.+ .++|||||+||++|..++...
T Consensus 39 raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll-~~ppdILVTTPEsL~~LLtsk 117 (1490)
T PRK09751 39 RILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLT-RNPPDILITTPESLYLMLTSR 117 (1490)
T ss_pred EEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHh-cCCCCEEEecHHHHHHHHhhh
Confidence 37999999999999999887522 122378999999999888776665 568999999999999988752
Q ss_pred CCccCCCccEEEEcchhHhhhhc----hHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCC-CCeEE
Q 028826 70 DVLDFRNLVILVLDEADRLLDMG----FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLR-NPVRI 135 (203)
Q Consensus 70 ~~~~l~~v~~lViDEad~l~~~~----~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~-~~~~i 135 (203)
....++++++|||||+|.|.+.. +...+.++...++...|+|++|||+++ .++++++... .++.+
T Consensus 118 ~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~QrIgLSATI~n-~eevA~~L~g~~pv~I 187 (1490)
T PRK09751 118 ARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSAQRIGLSATVRS-ASDVAAFLGGDRPVTV 187 (1490)
T ss_pred hhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCCeEEEEEeeCCC-HHHHHHHhcCCCCEEE
Confidence 33468999999999999998653 455667777777788999999999987 4666664433 35554
No 41
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.88 E-value=7.8e-22 Score=181.73 Aligned_cols=175 Identities=23% Similarity=0.260 Sum_probs=127.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEE---EEEcCcchHHHHH---HHHhCCCeEEEeccHHHHHHHHhCCCccC
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSM---LLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDF 74 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~---~~~~g~~~~~~~~---~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l 74 (203)
.+|||+||||||.|+++.+++++... ++++. .++||.+..++.. .+.+++++|+||||++|.+++.. +..
T Consensus 123 ~vLIL~PTreLa~Qi~~~l~~l~~~~-~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~---l~~ 198 (1171)
T TIGR01054 123 RCYIILPTTLLVIQVAEKISSLAEKA-GVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE---LGP 198 (1171)
T ss_pred eEEEEeCHHHHHHHHHHHHHHHHHhc-CCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH---hcC
Confidence 48999999999999999999998876 55543 4678887665533 34445699999999999988765 222
Q ss_pred CCccEEEEcchhHhhh-----------hchHHH-HHHHH----------------------HhCCCCCc--EEEEeee-c
Q 028826 75 RNLVILVLDEADRLLD-----------MGFQKQ-ISYII----------------------SRLPKLRR--TGLFSAT-Q 117 (203)
Q Consensus 75 ~~v~~lViDEad~l~~-----------~~~~~~-~~~il----------------------~~~~~~~q--~i~~SAT-~ 117 (203)
+++++|+||||.|++ .||.++ +..++ +.+++.+| .++|||| .
T Consensus 199 -~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~ 277 (1171)
T TIGR01054 199 -KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGR 277 (1171)
T ss_pred -CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCC
Confidence 899999999999998 567654 44433 34455555 5779999 5
Q ss_pred ChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCCCceeEEEEEcCCCCcHHHHHHHHhcCCCCeEEEEeccC
Q 028826 118 TEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPSQLVDLLIKNKSKKIIMYVQHG 197 (203)
Q Consensus 118 ~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~ns~ 197 (203)
|..+.. .++++...+.+... .....++.|.|..++. +...|.++++... .++|||||++
T Consensus 278 p~~~~~---~l~r~ll~~~v~~~---------------~~~~r~I~~~~~~~~~--~~~~L~~ll~~l~-~~~IVFv~t~ 336 (1171)
T TIGR01054 278 PRGKRA---KLFRELLGFEVGGG---------------SDTLRNVVDVYVEDED--LKETLLEIVKKLG-TGGIVYVSID 336 (1171)
T ss_pred ccccHH---HHcccccceEecCc---------------cccccceEEEEEeccc--HHHHHHHHHHHcC-CCEEEEEecc
Confidence 655432 34456656666555 4567889999875543 3567888887664 5799999998
Q ss_pred ---Cccc
Q 028826 198 ---NFSE 201 (203)
Q Consensus 198 ---~~~e 201 (203)
+.|+
T Consensus 337 ~~~~~a~ 343 (1171)
T TIGR01054 337 YGKEKAE 343 (1171)
T ss_pred ccHHHHH
Confidence 5554
No 42
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.87 E-value=4.3e-21 Score=146.52 Aligned_cols=131 Identities=46% Similarity=0.760 Sum_probs=119.5
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
++|++||++|+.|+...++.+.... ++++..+.||.+..+....+ ..+++|+|+||+++..++.. +..++.+++++|
T Consensus 72 viii~p~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~T~~~l~~~l~~-~~~~~~~l~~lI 148 (203)
T cd00268 72 ALILAPTRELALQIAEVARKLGKHT-NLKVVVIYGGTSIDKQIRKL-KRGPHIVVATPGRLLDLLER-GKLDLSKVKYLV 148 (203)
T ss_pred EEEEcCCHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHh-cCCCCEEEEChHHHHHHHHc-CCCChhhCCEEE
Confidence 7999999999999999999998765 89999999998877766665 46899999999999999987 778899999999
Q ss_pred EcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEE
Q 028826 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRI 135 (203)
Q Consensus 82 iDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i 135 (203)
+||+|.+.+.++...+..+.+.++..+|++++|||+++.+..++..++.+|+.+
T Consensus 149 vDE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 149 LDEADRMLDMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred EeChHHhhccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 999999998889999999999999999999999999999999999999998876
No 43
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.87 E-value=7.7e-23 Score=170.92 Aligned_cols=184 Identities=26% Similarity=0.319 Sum_probs=155.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhh--hcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCC--ccCCC
Q 028826 1 MGMIISPTRELSAQIYHVAQPFI--STLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV--LDFRN 76 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~--~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~--~~l~~ 76 (203)
+|+|+.||||||.|++.+++++. ... +.++..+............+.....|++|+||.++..++.. +. ++++.
T Consensus 211 ~a~Il~ptreLa~Qi~re~~k~~~~~~t-~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~-~~~~idl~~ 288 (593)
T KOG0344|consen 211 RALILSPTRELAAQIYREMRKYSIDEGT-SLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGL-GKLNIDLSK 288 (593)
T ss_pred EEEEecchHHHHHHHHHHHHhcCCCCCC-chhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcC-CCccchhhe
Confidence 48999999999999999999998 555 56666665554433333344445689999999999999987 44 78999
Q ss_pred ccEEEEcchhHhhhh-chHHHHHHHHHhCC-CCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhc
Q 028826 77 LVILVLDEADRLLDM-GFQKQISYIISRLP-KLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLA 154 (203)
Q Consensus 77 v~~lViDEad~l~~~-~~~~~~~~il~~~~-~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~ 154 (203)
|.++|+||||.+++. +|...+..|++.+. +...+-+||||++..++++++....++..+.++..
T Consensus 289 V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~-------------- 354 (593)
T KOG0344|consen 289 VEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLR-------------- 354 (593)
T ss_pred eeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecc--------------
Confidence 999999999999998 89999999988774 56678899999999999999999999999999887
Q ss_pred cCCCCCceeEEEEEcCC-CCcHHHHHHHHhcCCCCeEEEEeccCCccc
Q 028826 155 SSKTPLGLHLEYLECES-DKKPSQLVDLLIKNKSKKIIMYVQHGNFSE 201 (203)
Q Consensus 155 ~~~~~~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~ns~~~~e 201 (203)
.+....+.|...+|.+ ..|+-++.+++...-.+|++||+.+.++|.
T Consensus 355 -~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak 401 (593)
T KOG0344|consen 355 -NSANETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAK 401 (593)
T ss_pred -hhHhhhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHH
Confidence 5567788888888855 579999999999998889999999987764
No 44
>PRK00254 ski2-like helicase; Provisional
Probab=99.87 E-value=2.4e-21 Score=172.87 Aligned_cols=119 Identities=14% Similarity=0.219 Sum_probs=101.8
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
+|||+|+++|+.|+++.+.++.. . ++++..++|+.+...+ .+ +.++|+|+||+++..+++. +...+++++++|
T Consensus 71 ~l~l~P~~aLa~q~~~~~~~~~~-~-g~~v~~~~Gd~~~~~~--~~--~~~~IiV~Tpe~~~~ll~~-~~~~l~~l~lvV 143 (720)
T PRK00254 71 AVYLVPLKALAEEKYREFKDWEK-L-GLRVAMTTGDYDSTDE--WL--GKYDIIIATAEKFDSLLRH-GSSWIKDVKLVV 143 (720)
T ss_pred EEEEeChHHHHHHHHHHHHHHhh-c-CCEEEEEeCCCCCchh--hh--ccCCEEEEcHHHHHHHHhC-CchhhhcCCEEE
Confidence 79999999999999999998753 4 8999999998765432 22 4689999999999999887 666789999999
Q ss_pred EcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhc
Q 028826 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAG 128 (203)
Q Consensus 82 iDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~ 128 (203)
+||+|.+.+.++...+..++..++...|++++|||+++ ...+.++.
T Consensus 144 iDE~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~wl 189 (720)
T PRK00254 144 ADEIHLIGSYDRGATLEMILTHMLGRAQILGLSATVGN-AEELAEWL 189 (720)
T ss_pred EcCcCccCCccchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHHHh
Confidence 99999998888899999999999999999999999986 46666643
No 45
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.86 E-value=2.9e-21 Score=157.03 Aligned_cols=185 Identities=25% Similarity=0.471 Sum_probs=150.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcC--CCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTL--PDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~--~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
.|+|+-|+||||.|+++.+++|-.+. |.+|...+.||.....|.+++ ..+.||+||||+|+.+++.. +.+.+..++
T Consensus 288 ~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql-~~g~~ivvGtpgRl~~~is~-g~~~lt~cr 365 (725)
T KOG0349|consen 288 EAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQL-KDGTHIVVGTPGRLLQPISK-GLVTLTHCR 365 (725)
T ss_pred ceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHh-hcCceeeecCchhhhhhhhc-cceeeeeeE
Confidence 47999999999999999888886544 467777999999999999998 56899999999999999998 999999999
Q ss_pred EEEEcchhHhhhhchHHHHHHHHHhCCC------CCcEEEEeeecCh-hHHHHHHhcCCCCeEEEeccCcccccccchhh
Q 028826 79 ILVLDEADRLLDMGFQKQISYIISRLPK------LRRTGLFSATQTE-AVEELSKAGLRNPVRIEVRAESKSHHASASSQ 151 (203)
Q Consensus 79 ~lViDEad~l~~~~~~~~~~~il~~~~~------~~q~i~~SAT~~~-~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~ 151 (203)
++|+||+|.++..++.+.+.++..++|+ ..|.+++|||+.. +|..+.+..+.-|.++....+
T Consensus 366 FlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkge----------- 434 (725)
T KOG0349|consen 366 FLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGE----------- 434 (725)
T ss_pred EEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccc-----------
Confidence 9999999999999999999999988863 5699999999965 577788889999999998776
Q ss_pred hhccCCCCCceeEEEEEcCC------------------------------CCcHHHHHHH---------HhcCCCCeEEE
Q 028826 152 QLASSKTPLGLHLEYLECES------------------------------DKKPSQLVDL---------LIKNKSKKIIM 192 (203)
Q Consensus 152 ~~~~~~~~~~i~~~~~~~~~------------------------------~~k~~~l~~l---------l~~~~~~~~lI 192 (203)
...|+.++|....+.. .+....-..+ ++++...++||
T Consensus 435 ----D~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaii 510 (725)
T KOG0349|consen 435 ----DLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAII 510 (725)
T ss_pred ----cccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEE
Confidence 4555555555544321 1112222233 34567789999
Q ss_pred EeccCCcccC
Q 028826 193 YVQHGNFSED 202 (203)
Q Consensus 193 F~ns~~~~e~ 202 (203)
||.|+.+|++
T Consensus 511 fcrtk~dcDn 520 (725)
T KOG0349|consen 511 FCRTKQDCDN 520 (725)
T ss_pred EEeccccchH
Confidence 9999999864
No 46
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.85 E-value=1.2e-20 Score=171.03 Aligned_cols=117 Identities=18% Similarity=0.219 Sum_probs=91.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHH-------hh----hcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhC
Q 028826 1 MGMIISPTRELSAQIYHVAQP-------FI----STLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM 69 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~-------l~----~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~ 69 (203)
++||++|||+|+.|+++.+.. ++ ...+++++...+|+.+..++.+.+ .++|+|+|+||+++..++..
T Consensus 86 ~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l-~~~p~IlVtTPE~L~~ll~~- 163 (876)
T PRK13767 86 YCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKML-KKPPHILITTPESLAILLNS- 163 (876)
T ss_pred EEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHH-hCCCCEEEecHHHHHHHhcC-
Confidence 389999999999999876542 22 233478999999998877776666 56899999999999888865
Q ss_pred CCc--cCCCccEEEEcchhHhhhhchHHH----HHHHHHhCCCCCcEEEEeeecCh
Q 028826 70 DVL--DFRNLVILVLDEADRLLDMGFQKQ----ISYIISRLPKLRRTGLFSATQTE 119 (203)
Q Consensus 70 ~~~--~l~~v~~lViDEad~l~~~~~~~~----~~~il~~~~~~~q~i~~SAT~~~ 119 (203)
..+ .+++++++|+||+|.+.+..+... +.++....+...|++++|||+++
T Consensus 164 ~~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~ 219 (876)
T PRK13767 164 PKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEP 219 (876)
T ss_pred hhHHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCC
Confidence 333 478999999999999987654444 34444444567899999999986
No 47
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.85 E-value=3.6e-20 Score=158.18 Aligned_cols=176 Identities=18% Similarity=0.201 Sum_probs=121.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHH---HHHhCCCeEEEeccHHHHHHHHhCCCc-cCCC
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVL-DFRN 76 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~---~l~~~~~~ilV~Tp~~l~~~~~~~~~~-~l~~ 76 (203)
.+|||+||+||+.|..+.++.+ ++++..+.|+....+... .+..+.++|+++||+++.........+ ...+
T Consensus 53 ~~lVi~P~~~L~~dq~~~l~~~-----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~ 127 (470)
T TIGR00614 53 ITLVISPLISLMEDQVLQLKAS-----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKG 127 (470)
T ss_pred cEEEEecHHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCC
Confidence 3799999999999888877654 688888887766553332 334567999999999986422110123 5688
Q ss_pred ccEEEEcchhHhhhhc--hHHHHHHH---HHhCCCCCcEEEEeeecChhHHHHHHhcC--CCCeEEEeccCcccccccch
Q 028826 77 LVILVLDEADRLLDMG--FQKQISYI---ISRLPKLRRTGLFSATQTEAVEELSKAGL--RNPVRIEVRAESKSHHASAS 149 (203)
Q Consensus 77 v~~lViDEad~l~~~~--~~~~~~~i---l~~~~~~~q~i~~SAT~~~~v~~~~~~~l--~~~~~i~~~~~~~~~~~~~~ 149 (203)
++++||||||++.+|| |++.+..+ ...+ ++.|++++|||+++.+...+...+ .++..+.....
T Consensus 128 i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~--------- 197 (470)
T TIGR00614 128 ITLIAVDEAHCISQWGHDFRPDYKALGSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFD--------- 197 (470)
T ss_pred cCEEEEeCCcccCccccccHHHHHHHHHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCC---------
Confidence 9999999999999887 67776554 3444 578899999999998876555443 35555433222
Q ss_pred hhhhccCCCCCceeEEEEEcCCC-CcHHHHHHHHh-cCCCCeEEEEeccCCcccC
Q 028826 150 SQQLASSKTPLGLHLEYLECESD-KKPSQLVDLLI-KNKSKKIIMYVQHGNFSED 202 (203)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~~~~~~-~k~~~l~~ll~-~~~~~~~lIF~ns~~~~e~ 202 (203)
.+++.. ...... +....+...+. ....+++||||+|++.|++
T Consensus 198 ---------r~nl~~--~v~~~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~ 241 (470)
T TIGR00614 198 ---------RPNLYY--EVRRKTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQ 241 (470)
T ss_pred ---------CCCcEE--EEEeCCccHHHHHHHHHHHhcCCCceEEEECcHHHHHH
Confidence 234332 222222 55667777776 4566677999999998874
No 48
>PRK02362 ski2-like helicase; Provisional
Probab=99.85 E-value=1.6e-20 Score=168.06 Aligned_cols=119 Identities=16% Similarity=0.259 Sum_probs=96.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
.+||++|||+||.|+++.++++.+ . ++++..++|+.+...+ .+ ..++|+|+||+++..++++ +...+++++++
T Consensus 69 kal~i~P~raLa~q~~~~~~~~~~-~-g~~v~~~tGd~~~~~~--~l--~~~~IiV~Tpek~~~llr~-~~~~l~~v~lv 141 (737)
T PRK02362 69 KALYIVPLRALASEKFEEFERFEE-L-GVRVGISTGDYDSRDE--WL--GDNDIIVATSEKVDSLLRN-GAPWLDDITCV 141 (737)
T ss_pred cEEEEeChHHHHHHHHHHHHHhhc-C-CCEEEEEeCCcCcccc--cc--CCCCEEEECHHHHHHHHhc-ChhhhhhcCEE
Confidence 379999999999999999998864 3 7999999998764432 22 4689999999999999987 55668999999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhC---CCCCcEEEEeeecChhHHHHHHh
Q 028826 81 VLDEADRLLDMGFQKQISYIISRL---PKLRRTGLFSATQTEAVEELSKA 127 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~---~~~~q~i~~SAT~~~~v~~~~~~ 127 (203)
|+||+|.+.+.++...++.++..+ +...|++++|||+++. .++.++
T Consensus 142 ViDE~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la~w 190 (737)
T PRK02362 142 VVDEVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELADW 190 (737)
T ss_pred EEECccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHHHH
Confidence 999999998877877777776555 5678999999999863 445543
No 49
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.84 E-value=6.9e-20 Score=168.55 Aligned_cols=169 Identities=18% Similarity=0.224 Sum_probs=124.3
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhCCCccCCCc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v 77 (203)
+++||+||++||.|+++.+++..... ++++..++|+.+..++...+ ..+++||+||||+.+ . ..+.++++
T Consensus 651 qvlvLvPT~eLA~Q~~~~f~~~~~~~-~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~--~~v~~~~L 723 (1147)
T PRK10689 651 QVAVLVPTTLLAQQHYDNFRDRFANW-PVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----Q--SDVKWKDL 723 (1147)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccC-CceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----h--CCCCHhhC
Confidence 58999999999999999999877766 68998999988876665543 336799999999643 2 45678899
Q ss_pred cEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCC
Q 028826 78 VILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSK 157 (203)
Q Consensus 78 ~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 157 (203)
+++||||+|++ |+.. ...+..++.++|+++||||.++.+..+....++++..+.....
T Consensus 724 ~lLVIDEahrf---G~~~--~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~----------------- 781 (1147)
T PRK10689 724 GLLIVDEEHRF---GVRH--KERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA----------------- 781 (1147)
T ss_pred CEEEEechhhc---chhH--HHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCC-----------------
Confidence 99999999997 4322 3446778889999999999999888888888899988876544
Q ss_pred CCCceeEEEEEcCCC-CcHHHHHHHHhcCCCCeEEEEeccCCccc
Q 028826 158 TPLGLHLEYLECESD-KKPSQLVDLLIKNKSKKIIMYVQHGNFSE 201 (203)
Q Consensus 158 ~~~~i~~~~~~~~~~-~k~~~l~~ll~~~~~~~~lIF~ns~~~~e 201 (203)
....+++++...... .|...+..+. ++++++||||+.+.++
T Consensus 782 ~r~~v~~~~~~~~~~~~k~~il~el~---r~gqv~vf~n~i~~ie 823 (1147)
T PRK10689 782 RRLAVKTFVREYDSLVVREAILREIL---RGGQVYYLYNDVENIQ 823 (1147)
T ss_pred CCCCceEEEEecCcHHHHHHHHHHHh---cCCeEEEEECCHHHHH
Confidence 122355554433221 1222222332 4568999999987654
No 50
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.84 E-value=9.8e-20 Score=164.14 Aligned_cols=177 Identities=20% Similarity=0.203 Sum_probs=121.3
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHh-----CCCeEEEeccHHHHH---HHHhCCCc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEE-----EGANLLIGTPGRLYD---IMERMDVL 72 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~-----~~~~ilV~Tp~~l~~---~~~~~~~~ 72 (203)
.+|||+|+++|+.+....+.. . +++...+.|+.+..++...+.. ++++||++||++|.. ++.....+
T Consensus 502 iTLVISPLiSLmqDQV~~L~~---~--GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L 576 (1195)
T PLN03137 502 ITLVISPLVSLIQDQIMNLLQ---A--NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENL 576 (1195)
T ss_pred cEEEEeCHHHHHHHHHHHHHh---C--CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhh
Confidence 479999999999743333333 2 7999999999887776654432 578999999999863 22221111
Q ss_pred -cCCCccEEEEcchhHhhhhc--hHHHHHHH--HHhCCCCCcEEEEeeecChhHHHHHHhcCC--CCeEEEeccCccccc
Q 028826 73 -DFRNLVILVLDEADRLLDMG--FQKQISYI--ISRLPKLRRTGLFSATQTEAVEELSKAGLR--NPVRIEVRAESKSHH 145 (203)
Q Consensus 73 -~l~~v~~lViDEad~l~~~~--~~~~~~~i--l~~~~~~~q~i~~SAT~~~~v~~~~~~~l~--~~~~i~~~~~~~~~~ 145 (203)
....+.+|||||||++++|| |+++++.+ +....+..|++++|||+++.+...+...+. ++..+....
T Consensus 577 ~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf------ 650 (1195)
T PLN03137 577 NSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSF------ 650 (1195)
T ss_pred hhccccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeeccc------
Confidence 23568999999999999998 88888763 444445789999999999998875554443 333332221
Q ss_pred ccchhhhhccCCCCCceeEEEEEcCCCCc-HHHHHHHHhcC-CCCeEEEEeccCCcccC
Q 028826 146 ASASSQQLASSKTPLGLHLEYLECESDKK-PSQLVDLLIKN-KSKKIIMYVQHGNFSED 202 (203)
Q Consensus 146 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~k-~~~l~~ll~~~-~~~~~lIF~ns~~~~e~ 202 (203)
..+++ +|..++...+ ...+..++... ..+++||||+|++.||+
T Consensus 651 ------------~RpNL--~y~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~ 695 (1195)
T PLN03137 651 ------------NRPNL--WYSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEK 695 (1195)
T ss_pred ------------Cccce--EEEEeccchhHHHHHHHHHHhcccCCCceeEeCchhHHHH
Confidence 23344 4444444433 46677777644 35689999999998874
No 51
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.83 E-value=1.3e-19 Score=134.12 Aligned_cols=120 Identities=33% Similarity=0.521 Sum_probs=103.4
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
++|++|+++|+.|..+.+.++.... ++++..++||.....+.......+++|+|+||+++..++.. +..++.+++++|
T Consensus 47 ~lii~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~-~~~~~~~~~~iV 124 (169)
T PF00270_consen 47 VLIIVPTRALAEQQFERLRKFFSNT-NVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISN-GKINISRLSLIV 124 (169)
T ss_dssp EEEEESSHHHHHHHHHHHHHHTTTT-TSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHT-TSSTGTTESEEE
T ss_pred EEEEeeccccccccccccccccccc-ccccccccccccccccccccccccccccccCcchhhccccc-cccccccceeec
Confidence 7999999999999999999998874 79999999998866343333356899999999999999998 666888899999
Q ss_pred EcchhHhhhhchHHHHHHHHHhCC--CCCcEEEEeeecChhHHH
Q 028826 82 LDEADRLLDMGFQKQISYIISRLP--KLRRTGLFSATQTEAVEE 123 (203)
Q Consensus 82 iDEad~l~~~~~~~~~~~il~~~~--~~~q~i~~SAT~~~~v~~ 123 (203)
+||+|.+.++++...+..++..+. .+.|++++|||+++.++.
T Consensus 125 iDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 125 IDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLSATLPSNVEK 168 (169)
T ss_dssp EETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEESSSTHHHHH
T ss_pred cCcccccccccHHHHHHHHHHHhcCCCCCcEEEEeeCCChhHhh
Confidence 999999998888889999998884 368999999999977665
No 52
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.83 E-value=2.4e-19 Score=162.00 Aligned_cols=171 Identities=19% Similarity=0.220 Sum_probs=121.7
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHH---HHHhCCCeEEEeccHHHHHHHHhCCCccCCCc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~---~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v 77 (203)
+++|++||++||.|+++.++++.+.+ ++++..++|+.+..++.. .+..+.+|||||||.. + . +.+.++++
T Consensus 502 qvlvLvPT~~LA~Q~~~~f~~~~~~~-~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l-~-~~v~f~~L 574 (926)
T TIGR00580 502 QVAVLVPTTLLAQQHFETFKERFANF-PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----L-Q-KDVKFKDL 574 (926)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccC-CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----h-h-CCCCcccC
Confidence 58999999999999999999988877 799999988876544433 4444579999999943 2 2 56789999
Q ss_pred cEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCC
Q 028826 78 VILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSK 157 (203)
Q Consensus 78 ~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 157 (203)
+++||||+|++ | ...+..+..++.+.|++++|||.++....+....+.++..+.....
T Consensus 575 ~llVIDEahrf---g--v~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~----------------- 632 (926)
T TIGR00580 575 GLLIIDEEQRF---G--VKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPE----------------- 632 (926)
T ss_pred CEEEeeccccc---c--hhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCC-----------------
Confidence 99999999985 2 2334556777788999999999888877777667778877765443
Q ss_pred CCCceeEEEEEcCCCCcHHHHHHHHhcCCCCeEEEEeccCCcccC
Q 028826 158 TPLGLHLEYLECESDKKPSQLVDLLIKNKSKKIIMYVQHGNFSED 202 (203)
Q Consensus 158 ~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~ns~~~~e~ 202 (203)
....+.+++...+...-...+..-+ ..+++++||||+.+.+++
T Consensus 633 ~R~~V~t~v~~~~~~~i~~~i~~el--~~g~qv~if~n~i~~~e~ 675 (926)
T TIGR00580 633 DRLPVRTFVMEYDPELVREAIRREL--LRGGQVFYVHNRIESIEK 675 (926)
T ss_pred CccceEEEEEecCHHHHHHHHHHHH--HcCCeEEEEECCcHHHHH
Confidence 1223555554322211112222222 245789999999877653
No 53
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.82 E-value=2.3e-19 Score=157.19 Aligned_cols=174 Identities=19% Similarity=0.227 Sum_probs=128.8
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHH---HHHhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~---~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
++|++|+++|+.|..+.++.+ ++.+..+.|+.+..+... .+..+..+|+++||+++...... +.+...+++
T Consensus 56 ~lVisPl~sL~~dq~~~l~~~-----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~-~~l~~~~l~ 129 (591)
T TIGR01389 56 TVVISPLISLMKDQVDQLRAA-----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFL-NMLQRIPIA 129 (591)
T ss_pred EEEEcCCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHH-HHHhcCCCC
Confidence 799999999999888887775 688888888877665443 34457899999999999753333 345667899
Q ss_pred EEEEcchhHhhhhc--hHHHHHHH---HHhCCCCCcEEEEeeecChhHHHHHHhcCC--CCeEEEeccCcccccccchhh
Q 028826 79 ILVLDEADRLLDMG--FQKQISYI---ISRLPKLRRTGLFSATQTEAVEELSKAGLR--NPVRIEVRAESKSHHASASSQ 151 (203)
Q Consensus 79 ~lViDEad~l~~~~--~~~~~~~i---l~~~~~~~q~i~~SAT~~~~v~~~~~~~l~--~~~~i~~~~~~~~~~~~~~~~ 151 (203)
++||||||++.+|| |++.+..+ ...++ ..+++++|||.++.+...+..++. ++..+....
T Consensus 130 ~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~------------ 196 (591)
T TIGR01389 130 LVAVDEAHCVSQWGHDFRPEYQRLGSLAERFP-QVPRIALTATADAETRQDIRELLRLADANEFITSF------------ 196 (591)
T ss_pred EEEEeCCcccccccCccHHHHHHHHHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCC------------
Confidence 99999999999887 77776655 34454 445999999999998876665554 343332111
Q ss_pred hhccCCCCCceeEEEEEcCCCCcHHHHHHHHhcCCCCeEEEEeccCCcccC
Q 028826 152 QLASSKTPLGLHLEYLECESDKKPSQLVDLLIKNKSKKIIMYVQHGNFSED 202 (203)
Q Consensus 152 ~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~ns~~~~e~ 202 (203)
..+++ .|......++...+.+.+.....+++||||+|++.|++
T Consensus 197 ------~r~nl--~~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~ 239 (591)
T TIGR01389 197 ------DRPNL--RFSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEE 239 (591)
T ss_pred ------CCCCc--EEEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHHHHHH
Confidence 22333 34444566788889999988778899999999998864
No 54
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.81 E-value=1.7e-19 Score=160.09 Aligned_cols=179 Identities=17% Similarity=0.224 Sum_probs=129.4
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
++|+||+|+||.|+++++.++... |+++...+|+.+...+ .+ .+++|+|+|||++-.++++ ...-+.+++++|
T Consensus 79 ~vYivPlkALa~Ek~~~~~~~~~~--GirV~~~TgD~~~~~~--~l--~~~~ViVtT~EK~Dsl~R~-~~~~~~~V~lvV 151 (766)
T COG1204 79 VVYIVPLKALAEEKYEEFSRLEEL--GIRVGISTGDYDLDDE--RL--ARYDVIVTTPEKLDSLTRK-RPSWIEEVDLVV 151 (766)
T ss_pred EEEEeChHHHHHHHHHHhhhHHhc--CCEEEEecCCcccchh--hh--ccCCEEEEchHHhhHhhhc-CcchhhcccEEE
Confidence 799999999999999999977554 9999999999885542 22 5799999999999999988 555778999999
Q ss_pred EcchhHhhhhchHHHHHHHHHhCCC---CCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCC
Q 028826 82 LDEADRLLDMGFQKQISYIISRLPK---LRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKT 158 (203)
Q Consensus 82 iDEad~l~~~~~~~~~~~il~~~~~---~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (203)
|||+|.+-+....+.+..++..+.. ..|++.+|||+|+ ..+++.+.-.++..-...... ...
T Consensus 152 iDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN-~~evA~wL~a~~~~~~~rp~~--------------l~~ 216 (766)
T COG1204 152 IDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLSATLPN-AEEVADWLNAKLVESDWRPVP--------------LRR 216 (766)
T ss_pred EeeeeecCCcccCceehhHHHHHHhhCcceEEEEEeeecCC-HHHHHHHhCCcccccCCCCcc--------------ccc
Confidence 9999998777566666666666643 4799999999996 477777665555522222221 223
Q ss_pred CCceeEEEEEcCCCCc-------HHHHHHHHhcC-CCCeEEEEeccCCcccC
Q 028826 159 PLGLHLEYLECESDKK-------PSQLVDLLIKN-KSKKIIMYVQHGNFSED 202 (203)
Q Consensus 159 ~~~i~~~~~~~~~~~k-------~~~l~~ll~~~-~~~~~lIF~ns~~~~e~ 202 (203)
+....+.++..+...| ...+...+... .++++||||+|++.++.
T Consensus 217 ~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~ 268 (766)
T COG1204 217 GVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEK 268 (766)
T ss_pred CCccceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHHH
Confidence 3344555555554443 33333333333 56799999999998753
No 55
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.81 E-value=6.9e-19 Score=154.29 Aligned_cols=175 Identities=19% Similarity=0.167 Sum_probs=124.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHH---HHHhCCCeEEEeccHHHHHHHHhCCCccCCCc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~---~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v 77 (203)
.+||++|+++|+.|..+.++.+ ++.+..+.++....+... .+..+..+++++||+++...... ..+...++
T Consensus 67 ~tlVisPl~sL~~dqv~~l~~~-----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~-~~l~~~~l 140 (607)
T PRK11057 67 LTLVVSPLISLMKDQVDQLLAN-----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFL-EHLAHWNP 140 (607)
T ss_pred CEEEEecHHHHHHHHHHHHHHc-----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHH-HHHhhCCC
Confidence 3799999999999988888765 677888888776655433 23346789999999998732211 23445679
Q ss_pred cEEEEcchhHhhhhc--hHHHHHHH---HHhCCCCCcEEEEeeecChhHHHHHHhc--CCCCeEEEeccCcccccccchh
Q 028826 78 VILVLDEADRLLDMG--FQKQISYI---ISRLPKLRRTGLFSATQTEAVEELSKAG--LRNPVRIEVRAESKSHHASASS 150 (203)
Q Consensus 78 ~~lViDEad~l~~~~--~~~~~~~i---l~~~~~~~q~i~~SAT~~~~v~~~~~~~--l~~~~~i~~~~~~~~~~~~~~~ 150 (203)
+++||||||++.+|| |++.+..+ ...+ +..|++++|||.++.+...+... +.+|.......
T Consensus 141 ~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~----------- 208 (607)
T PRK11057 141 ALLAVDEAHCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSF----------- 208 (607)
T ss_pred CEEEEeCccccccccCcccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCC-----------
Confidence 999999999999887 66665544 3444 57899999999999876643333 34554332221
Q ss_pred hhhccCCCCCceeEEEEEcCCCCcHHHHHHHHhcCCCCeEEEEeccCCcccC
Q 028826 151 QQLASSKTPLGLHLEYLECESDKKPSQLVDLLIKNKSKKIIMYVQHGNFSED 202 (203)
Q Consensus 151 ~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~ns~~~~e~ 202 (203)
..+++ .|..+....+...+...+.....+++||||||++.||+
T Consensus 209 -------~r~nl--~~~v~~~~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~ 251 (607)
T PRK11057 209 -------DRPNI--RYTLVEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVED 251 (607)
T ss_pred -------CCCcc--eeeeeeccchHHHHHHHHHhcCCCCEEEEECcHHHHHH
Confidence 22333 34445556677888888888888899999999998874
No 56
>PRK01172 ski2-like helicase; Provisional
Probab=99.80 E-value=4.1e-19 Score=157.76 Aligned_cols=119 Identities=20% Similarity=0.240 Sum_probs=95.1
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
+||++|+++||.|+++.+.++.. . +.++...+|+.+.... .+ ..+||+|+||+++..++.+ ....+++++++|
T Consensus 68 ~v~i~P~raLa~q~~~~~~~l~~-~-g~~v~~~~G~~~~~~~--~~--~~~dIiv~Tpek~~~l~~~-~~~~l~~v~lvV 140 (674)
T PRK01172 68 SIYIVPLRSLAMEKYEELSRLRS-L-GMRVKISIGDYDDPPD--FI--KRYDVVILTSEKADSLIHH-DPYIINDVGLIV 140 (674)
T ss_pred EEEEechHHHHHHHHHHHHHHhh-c-CCeEEEEeCCCCCChh--hh--ccCCEEEECHHHHHHHHhC-ChhHHhhcCEEE
Confidence 79999999999999999998754 4 7899888888664332 22 4689999999999998876 555689999999
Q ss_pred EcchhHhhhhchHHHHHHHHHh---CCCCCcEEEEeeecChhHHHHHHhc
Q 028826 82 LDEADRLLDMGFQKQISYIISR---LPKLRRTGLFSATQTEAVEELSKAG 128 (203)
Q Consensus 82 iDEad~l~~~~~~~~~~~il~~---~~~~~q~i~~SAT~~~~v~~~~~~~ 128 (203)
+||+|.+.+.++...++.++.. ++...|++++|||+++ ..++.+++
T Consensus 141 iDEaH~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~wl 189 (674)
T PRK01172 141 ADEIHIIGDEDRGPTLETVLSSARYVNPDARILALSATVSN-ANELAQWL 189 (674)
T ss_pred EecchhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHHHh
Confidence 9999999877776667666544 4567899999999986 46666643
No 57
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.79 E-value=4.7e-18 Score=150.69 Aligned_cols=169 Identities=17% Similarity=0.242 Sum_probs=113.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHH---HHHhCCCeEEEeccHHHHHHHHhCCCccCCCc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~---~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v 77 (203)
+++|++||++||.|+++.++++.+.. ++++..++||.+..+... .+.++.++|+||||+++. ....++++
T Consensus 312 q~lilaPT~~LA~Q~~~~l~~l~~~~-~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~------~~v~~~~l 384 (681)
T PRK10917 312 QAALMAPTEILAEQHYENLKKLLEPL-GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQ------DDVEFHNL 384 (681)
T ss_pred eEEEEeccHHHHHHHHHHHHHHHhhc-CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhc------ccchhccc
Confidence 48999999999999999999999887 899999999988654433 444557999999998874 34567899
Q ss_pred cEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCC
Q 028826 78 VILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSK 157 (203)
Q Consensus 78 ~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 157 (203)
+++|+||+|++- . ..+..+...+..+|++++|||..+....+......+...+.....
T Consensus 385 ~lvVIDE~Hrfg-~----~qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~----------------- 442 (681)
T PRK10917 385 GLVIIDEQHRFG-V----EQRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPP----------------- 442 (681)
T ss_pred ceEEEechhhhh-H----HHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCC-----------------
Confidence 999999999862 2 222334444567999999999877655554422223333221111
Q ss_pred CCCceeEEEEEcCCCCcHHHHHHHHhc--CCCCeEEEEeccCCccc
Q 028826 158 TPLGLHLEYLECESDKKPSQLVDLLIK--NKSKKIIMYVQHGNFSE 201 (203)
Q Consensus 158 ~~~~i~~~~~~~~~~~k~~~l~~ll~~--~~~~~~lIF~ns~~~~e 201 (203)
....+...+.. . ++...+.+.+.. ..+++++|||++.+.++
T Consensus 443 ~r~~i~~~~~~--~-~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~ 485 (681)
T PRK10917 443 GRKPITTVVIP--D-SRRDEVYERIREEIAKGRQAYVVCPLIEESE 485 (681)
T ss_pred CCCCcEEEEeC--c-ccHHHHHHHHHHHHHcCCcEEEEEccccccc
Confidence 12234444432 2 223333344432 35669999999766543
No 58
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.78 E-value=2.1e-18 Score=152.17 Aligned_cols=176 Identities=18% Similarity=0.208 Sum_probs=131.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCc--cCCCcc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVL--DFRNLV 78 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~--~l~~v~ 78 (203)
+|||++|.|+|++.+.+-++..+..+ |+.+..-+|+....+..+++ .++|||+|+|||.|.-++.. +.. .+++++
T Consensus 75 ~~lYIsPLkALn~Di~~rL~~~~~~~-G~~v~vRhGDT~~~er~r~~-~~PPdILiTTPEsL~lll~~-~~~r~~l~~vr 151 (814)
T COG1201 75 YALYISPLKALNNDIRRRLEEPLREL-GIEVAVRHGDTPQSEKQKML-KNPPHILITTPESLAILLNS-PKFRELLRDVR 151 (814)
T ss_pred EEEEeCcHHHHHHHHHHHHHHHHHHc-CCccceecCCCChHHhhhcc-CCCCcEEEeChhHHHHHhcC-HHHHHHhcCCc
Confidence 48999999999999999999999988 99998888888877777776 68999999999999988865 332 489999
Q ss_pred EEEEcchhHhhhhchHHH----HHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCC--Ce-EEEeccCcccccccchhh
Q 028826 79 ILVLDEADRLLDMGFQKQ----ISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRN--PV-RIEVRAESKSHHASASSQ 151 (203)
Q Consensus 79 ~lViDEad~l~~~~~~~~----~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~--~~-~i~~~~~~~~~~~~~~~~ 151 (203)
++|+||+|.+.+.....+ +.++....+ ..|.|++|||..+ ....+++.... +. .+.+...
T Consensus 152 ~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~-~~~varfL~g~~~~~~Iv~~~~~----------- 218 (814)
T COG1201 152 YVIVDEIHALAESKRGVQLALSLERLRELAG-DFQRIGLSATVGP-PEEVAKFLVGFGDPCEIVDVSAA----------- 218 (814)
T ss_pred EEEeehhhhhhccccchhhhhhHHHHHhhCc-ccEEEeehhccCC-HHHHHHHhcCCCCceEEEEcccC-----------
Confidence 999999999986554333 345555555 8999999999985 45666655554 33 3333333
Q ss_pred hhccCCCCCceeEEEEEcCC---------CCcHHHHHHHHhcCCCCeEEEEeccCCcccC
Q 028826 152 QLASSKTPLGLHLEYLECES---------DKKPSQLVDLLIKNKSKKIIMYVQHGNFSED 202 (203)
Q Consensus 152 ~~~~~~~~~~i~~~~~~~~~---------~~k~~~l~~ll~~~~~~~~lIF~ns~~~~e~ 202 (203)
....+....... ..-+..+.+++++++ .+|||+|||..+|+
T Consensus 219 --------k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~~--ttLIF~NTR~~aE~ 268 (814)
T COG1201 219 --------KKLEIKVISPVEDLIYDEELWAALYERIAELVKKHR--TTLIFTNTRSGAER 268 (814)
T ss_pred --------CcceEEEEecCCccccccchhHHHHHHHHHHHhhcC--cEEEEEeChHHHHH
Confidence 222333332211 125677777777777 89999999998874
No 59
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.77 E-value=9.1e-18 Score=150.47 Aligned_cols=169 Identities=13% Similarity=0.119 Sum_probs=121.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHHh-hhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccE
Q 028826 1 MGMIISPTRELSAQIYHVAQPF-ISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVI 79 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l-~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~ 79 (203)
.++|+.|||++|.|+.+.+.+. +... +..+++..++.+.. ....+|+|+||++|++++.. ...++++++
T Consensus 50 ~ilvlqPrR~aA~qia~rva~~l~~~~-g~~VGy~vr~~~~~-------~~~t~I~v~T~G~Llr~l~~--d~~L~~v~~ 119 (812)
T PRK11664 50 KIIMLEPRRLAARNVAQRLAEQLGEKP-GETVGYRMRAESKV-------GPNTRLEVVTEGILTRMIQR--DPELSGVGL 119 (812)
T ss_pred eEEEECChHHHHHHHHHHHHHHhCccc-CceEEEEecCcccc-------CCCCcEEEEChhHHHHHHhh--CCCcCcCcE
Confidence 3799999999999999988544 3344 77888888776532 34568999999999998875 468999999
Q ss_pred EEEcchhH-hhhhch-HHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCC
Q 028826 80 LVLDEADR-LLDMGF-QKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSK 157 (203)
Q Consensus 80 lViDEad~-l~~~~~-~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 157 (203)
+|+||+|. .++.++ ...+..+++.+++..|++++|||++.+ .+ ..++.++..+.+...
T Consensus 120 IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~~--~l-~~~~~~~~~I~~~gr----------------- 179 (812)
T PRK11664 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDND--RL-QQLLPDAPVIVSEGR----------------- 179 (812)
T ss_pred EEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCHH--HH-HHhcCCCCEEEecCc-----------------
Confidence 99999996 444332 334456677788899999999999865 23 456666555544322
Q ss_pred CCCceeEEEEEcCCCCcHH-----HHHHHHhcCCCCeEEEEeccCCccc
Q 028826 158 TPLGLHLEYLECESDKKPS-----QLVDLLIKNKSKKIIMYVQHGNFSE 201 (203)
Q Consensus 158 ~~~~i~~~~~~~~~~~k~~-----~l~~ll~~~~~~~~lIF~ns~~~~e 201 (203)
...++++|..++..++.. .+..+++. ..+.+|||||+.+.++
T Consensus 180 -~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~ 226 (812)
T PRK11664 180 -SFPVERRYQPLPAHQRFDEAVARATAELLRQ-ESGSLLLFLPGVGEIQ 226 (812)
T ss_pred -cccceEEeccCchhhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHH
Confidence 124778887776665553 44555543 3578999999987765
No 60
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.77 E-value=1.4e-17 Score=149.17 Aligned_cols=169 Identities=15% Similarity=0.151 Sum_probs=120.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHHh-hhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccE
Q 028826 1 MGMIISPTRELSAQIYHVAQPF-ISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVI 79 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l-~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~ 79 (203)
.++|+.|+|++|.|+.+.+.+. +... +..+++.+++.+. . ....+|+|+||++|++++.. ..+++++++
T Consensus 47 ~ilvlqPrR~aA~qiA~rva~~~~~~~-g~~VGy~vr~~~~------~-s~~t~I~v~T~G~Llr~l~~--d~~L~~v~~ 116 (819)
T TIGR01970 47 KIIMLEPRRLAARSAAQRLASQLGEAV-GQTVGYRVRGENK------V-SRRTRLEVVTEGILTRMIQD--DPELDGVGA 116 (819)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhCCCc-CcEEEEEEccccc------c-CCCCcEEEECCcHHHHHHhh--CcccccCCE
Confidence 3799999999999999988544 3333 6677766665432 1 35689999999999999876 468999999
Q ss_pred EEEcchh-HhhhhchH-HHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCC
Q 028826 80 LVLDEAD-RLLDMGFQ-KQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSK 157 (203)
Q Consensus 80 lViDEad-~l~~~~~~-~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 157 (203)
+||||+| ++++.++. ..+..+...+++..|++++|||++... ...++.++..+.+...
T Consensus 117 VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~~---l~~~l~~~~vI~~~gr----------------- 176 (819)
T TIGR01970 117 LIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGER---LSSLLPDAPVVESEGR----------------- 176 (819)
T ss_pred EEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHHH---HHHHcCCCcEEEecCc-----------------
Confidence 9999999 47766543 334566677788999999999999753 3456666555554332
Q ss_pred CCCceeEEEEEcCCCCcH-----HHHHHHHhcCCCCeEEEEeccCCccc
Q 028826 158 TPLGLHLEYLECESDKKP-----SQLVDLLIKNKSKKIIMYVQHGNFSE 201 (203)
Q Consensus 158 ~~~~i~~~~~~~~~~~k~-----~~l~~ll~~~~~~~~lIF~ns~~~~e 201 (203)
...+.++|..++..++. ..+..+++. ..+++||||+++.+++
T Consensus 177 -~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~ 223 (819)
T TIGR01970 177 -SFPVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIR 223 (819)
T ss_pred -ceeeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHH
Confidence 12467778776655543 344455544 3568999999987664
No 61
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.77 E-value=6e-18 Score=148.45 Aligned_cols=172 Identities=15% Similarity=0.137 Sum_probs=118.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhc--CCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFIST--LPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~--~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+++|++||||||.|+...+.+..++ .++.++...+||... ...... ....+++|+|++. ...++++++
T Consensus 224 ~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~-~k~~~Ilv~T~~L--------~l~~L~~v~ 293 (675)
T PHA02653 224 PIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPD-ELINTN-PKPYGLVFSTHKL--------TLNKLFDYG 293 (675)
T ss_pred EEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcch-HHhhcc-cCCCCEEEEeCcc--------cccccccCC
Confidence 3789999999999999998876543 346778888999773 221211 2468999999752 223578899
Q ss_pred EEEEcchhHhhhhchHHHHHHHHHhC-CCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCC
Q 028826 79 ILVLDEADRLLDMGFQKQISYIISRL-PKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSK 157 (203)
Q Consensus 79 ~lViDEad~l~~~~~~~~~~~il~~~-~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 157 (203)
++|+||||.+...+ +.+..++... ++.+|+++||||+++++..+ ..+++++..+.+...
T Consensus 294 ~VVIDEaHEr~~~~--DllL~llk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr----------------- 353 (675)
T PHA02653 294 TVIIDEVHEHDQIG--DIIIAVARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG----------------- 353 (675)
T ss_pred EEEccccccCccch--hHHHHHHHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC-----------------
Confidence 99999999986654 3444555444 34569999999999988877 568889888877532
Q ss_pred CCCceeEEEEEcCC----------CCcHHHHHHHHhc--CCCCeEEEEeccCCcccC
Q 028826 158 TPLGLHLEYLECES----------DKKPSQLVDLLIK--NKSKKIIMYVQHGNFSED 202 (203)
Q Consensus 158 ~~~~i~~~~~~~~~----------~~k~~~l~~ll~~--~~~~~~lIF~ns~~~~e~ 202 (203)
....++++|..... .++...+..+... ...+++||||+++..|++
T Consensus 354 t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~ 410 (675)
T PHA02653 354 TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVFVASVSQCEE 410 (675)
T ss_pred cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEEECcHHHHHH
Confidence 34567777764331 1232333333322 234689999999987764
No 62
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.75 E-value=5.9e-17 Score=142.72 Aligned_cols=170 Identities=18% Similarity=0.250 Sum_probs=110.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHH---HHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKAD---VKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~---~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v 77 (203)
+++|++||++||.|+++.++++.+.. ++++..++||....+. ...+.++.++|+||||+++. ....++++
T Consensus 286 qvlilaPT~~LA~Q~~~~~~~l~~~~-gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~------~~~~~~~l 358 (630)
T TIGR00643 286 QVALMAPTEILAEQHYNSLRNLLAPL-GIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQ------EKVEFKRL 358 (630)
T ss_pred cEEEECCHHHHHHHHHHHHHHHhccc-CcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHh------cccccccc
Confidence 58999999999999999999998877 8999999999876653 33444567999999998874 34667899
Q ss_pred cEEEEcchhHhhhhchHHHHHHHHHhCC--CCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhcc
Q 028826 78 VILVLDEADRLLDMGFQKQISYIISRLP--KLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLAS 155 (203)
Q Consensus 78 ~~lViDEad~l~~~~~~~~~~~il~~~~--~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~ 155 (203)
+++|+||+|++-. ..+.. +..... ..+|++++|||..+....+......+...+.....
T Consensus 359 ~lvVIDEaH~fg~-~qr~~---l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~--------------- 419 (630)
T TIGR00643 359 ALVIIDEQHRFGV-EQRKK---LREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPP--------------- 419 (630)
T ss_pred ceEEEechhhccH-HHHHH---HHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCC---------------
Confidence 9999999998622 12222 223322 26899999999876544433211111111111111
Q ss_pred CCCCCceeEEEEEcCCCCcHHHHHHHHhc--CCCCeEEEEeccCCccc
Q 028826 156 SKTPLGLHLEYLECESDKKPSQLVDLLIK--NKSKKIIMYVQHGNFSE 201 (203)
Q Consensus 156 ~~~~~~i~~~~~~~~~~~k~~~l~~ll~~--~~~~~~lIF~ns~~~~e 201 (203)
....+..++. ...++ ..++..+.. ..+++++|||++.+.++
T Consensus 420 --~r~~i~~~~~--~~~~~-~~~~~~i~~~l~~g~q~~v~~~~i~~s~ 462 (630)
T TIGR00643 420 --GRKPITTVLI--KHDEK-DIVYEFIEEEIAKGRQAYVVYPLIEESE 462 (630)
T ss_pred --CCCceEEEEe--CcchH-HHHHHHHHHHHHhCCcEEEEEccccccc
Confidence 1123333332 33333 444444443 25678999999876543
No 63
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.74 E-value=1.5e-16 Score=131.43 Aligned_cols=200 Identities=13% Similarity=0.080 Sum_probs=120.2
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcC---CCceEEEEEcCcchH--HH-----------------HHHHHhCCCeEEEecc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTL---PDVKSMLLVGGVEVK--AD-----------------VKKIEEEGANLLIGTP 59 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~---~~i~~~~~~~g~~~~--~~-----------------~~~l~~~~~~ilV~Tp 59 (203)
+++++|+++|+.|+++.++++...+ .+.++..+.|....+ .. .+.+..++|+|+++||
T Consensus 42 ~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p 121 (357)
T TIGR03158 42 TIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNP 121 (357)
T ss_pred EEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecH
Confidence 6899999999999999999987543 255666655542111 00 0111235799999999
Q ss_pred HHHHHHHHhC---CC-c---cCCCccEEEEcchhHhhhhc-----hHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHh
Q 028826 60 GRLYDIMERM---DV-L---DFRNLVILVLDEADRLLDMG-----FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (203)
Q Consensus 60 ~~l~~~~~~~---~~-~---~l~~v~~lViDEad~l~~~~-----~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~ 127 (203)
+.+..+++.. +. . .+.+++++|+||+|.+-.++ +......+++......+++++|||+++.+...+..
T Consensus 122 ~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~ 201 (357)
T TIGR03158 122 DIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQN 201 (357)
T ss_pred HHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHh
Confidence 9998776531 11 1 25799999999999975332 11233344444444679999999999998887776
Q ss_pred c--CCCCeEEEeccCccc-c--cccchhhhhccCCCCCceeEEEEEcCCCCcHHHHHHHHh-------cCCCCeEEEEec
Q 028826 128 G--LRNPVRIEVRAESKS-H--HASASSQQLASSKTPLGLHLEYLECESDKKPSQLVDLLI-------KNKSKKIIMYVQ 195 (203)
Q Consensus 128 ~--l~~~~~i~~~~~~~~-~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~-------~~~~~~~lIF~n 195 (203)
. +..+..+.-+..... + +.......++.....+.+++.+.. ....|...+..+++ ...++++|||||
T Consensus 202 ~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~n 280 (357)
T TIGR03158 202 AKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILD 280 (357)
T ss_pred ccccCceeeeecCcccccCCChhhhccccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEEC
Confidence 5 445543322221000 0 000000111112233477777766 44445544433332 235679999999
Q ss_pred cCCcccC
Q 028826 196 HGNFSED 202 (203)
Q Consensus 196 s~~~~e~ 202 (203)
|++.|++
T Consensus 281 t~~~~~~ 287 (357)
T TIGR03158 281 SLDEVNR 287 (357)
T ss_pred CHHHHHH
Confidence 9988763
No 64
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.74 E-value=1.5e-17 Score=137.59 Aligned_cols=180 Identities=16% Similarity=0.081 Sum_probs=112.1
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchH------------HHHHHHHh-----CCCeEEEeccHHHHH
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVK------------ADVKKIEE-----EGANLLIGTPGRLYD 64 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~------------~~~~~l~~-----~~~~ilV~Tp~~l~~ 64 (203)
++|++|+++|+.|+++.+..+.+. +++.++|+.... ........ ...+|+|+||+.+..
T Consensus 32 ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~ 107 (358)
T TIGR01587 32 VIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSFKRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLK 107 (358)
T ss_pred EEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHHHHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHH
Confidence 789999999999999999997532 344445443211 11111101 236799999999987
Q ss_pred HHHh-CC--CccCC--CccEEEEcchhHhhhhchHHHHHHHHHhCC-CCCcEEEEeeecChhHHHHHHhcCCCCeEEEec
Q 028826 65 IMER-MD--VLDFR--NLVILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSATQTEAVEELSKAGLRNPVRIEVR 138 (203)
Q Consensus 65 ~~~~-~~--~~~l~--~v~~lViDEad~l~~~~~~~~~~~il~~~~-~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~ 138 (203)
.+.. .+ ...+. ..+++|+||+|.+.+.++.. +..+++.++ .+.|++++|||+|+.+.++...+...+......
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~ 186 (358)
T TIGR01587 108 SVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLD 186 (358)
T ss_pred HHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCC
Confidence 7654 01 11122 23799999999998765433 555555554 478999999999988877777654432211111
Q ss_pred cCcccccccchhhhhccCCCCCceeEEEEEcC--CCCcHHHHHHHHhcC-CCCeEEEEeccCCcccC
Q 028826 139 AESKSHHASASSQQLASSKTPLGLHLEYLECE--SDKKPSQLVDLLIKN-KSKKIIMYVQHGNFSED 202 (203)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~k~~~l~~ll~~~-~~~~~lIF~ns~~~~e~ 202 (203)
.. .......+.+..+. ...+...+.++++.. .++++||||||++.|++
T Consensus 187 ~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~ 237 (358)
T TIGR01587 187 LK----------------EERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQE 237 (358)
T ss_pred Cc----------------cccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHHHH
Confidence 11 00011233333222 245677777777643 56799999999988764
No 65
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.71 E-value=4.8e-16 Score=139.86 Aligned_cols=183 Identities=19% Similarity=0.204 Sum_probs=128.7
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCC-CceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHh-C--CCccCCC
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLP-DVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER-M--DVLDFRN 76 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~-~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~-~--~~~~l~~ 76 (203)
.||+|.||++||+...+.++++.+..+ +++...+.|.....+.. .+..++||||++||..|..++-. . -.+.+++
T Consensus 117 ~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~-~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~ 195 (851)
T COG1205 117 RALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERR-AIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRN 195 (851)
T ss_pred cEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHH-HHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhc
Confidence 489999999999999999999999885 57777767666655443 44478999999999999885543 1 1234788
Q ss_pred ccEEEEcchhHhhhhchHHHHHHHHHhC-------CCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccch
Q 028826 77 LVILVLDEADRLLDMGFQKQISYIISRL-------PKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASAS 149 (203)
Q Consensus 77 v~~lViDEad~l~~~~~~~~~~~il~~~-------~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~ 149 (203)
+++||+||+|.. ...|..++..+++++ +...|+|+.|||+... .+++..+........+...
T Consensus 196 Lk~lVvDElHtY-rGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~--------- 264 (851)
T COG1205 196 LKYLVVDELHTY-RGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVDED--------- 264 (851)
T ss_pred CcEEEEecceec-cccchhHHHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeeccCC---------
Confidence 999999999976 333555554444433 4688999999999876 4455555554444434333
Q ss_pred hhhhccCCCCCceeEEEEEcC---------CCCcHHHHHHHHhc--CCCCeEEEEeccCCcccC
Q 028826 150 SQQLASSKTPLGLHLEYLECE---------SDKKPSQLVDLLIK--NKSKKIIMYVQHGNFSED 202 (203)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~~~~---------~~~k~~~l~~ll~~--~~~~~~lIF~ns~~~~e~ 202 (203)
..+....+++..-+ ...+...+..+... ..+-++|+|+.|++.+|.
T Consensus 265 -------g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~ 321 (851)
T COG1205 265 -------GSPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVEL 321 (851)
T ss_pred -------CCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhh
Confidence 24555566655555 23555555555543 256699999999998875
No 66
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.67 E-value=2.6e-16 Score=132.16 Aligned_cols=176 Identities=19% Similarity=0.215 Sum_probs=126.7
Q ss_pred EEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhCCCccCCCccE
Q 028826 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLVI 79 (203)
Q Consensus 3 lil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~ 79 (203)
|+|+|.-+||+|-|+.+++=-+++ ++++..-+|........... ....+||||||-+-+..+++. + -++.++..
T Consensus 265 lfLvPLVALANQKy~dF~~rYs~L-glkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRt-g-~~lgdiGt 341 (830)
T COG1202 265 LFLVPLVALANQKYEDFKERYSKL-GLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRT-G-KDLGDIGT 341 (830)
T ss_pred EEEehhHHhhcchHHHHHHHhhcc-cceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHc-C-Ccccccce
Confidence 799999999999999997655666 78887777765444332211 124589999999999999986 4 78999999
Q ss_pred EEEcchhHhhhhchHHHHHHH---HHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccC
Q 028826 80 LVLDEADRLLDMGFQKQISYI---ISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASS 156 (203)
Q Consensus 80 lViDEad~l~~~~~~~~~~~i---l~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~ 156 (203)
+||||+|.+-+....+.+.-+ ++.+.+..|+|.+|||..++ .++++.+-...+...
T Consensus 342 VVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~-------------------- 400 (830)
T COG1202 342 VVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYD-------------------- 400 (830)
T ss_pred EEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeec--------------------
Confidence 999999988664433333333 33344689999999999865 677776655544332
Q ss_pred CCCCceeEEEEEc-CCCCcHHHHHHHHhcC--------CCCeEEEEeccCCcccC
Q 028826 157 KTPLGLHLEYLEC-ESDKKPSQLVDLLIKN--------KSKKIIMYVQHGNFSED 202 (203)
Q Consensus 157 ~~~~~i~~~~~~~-~~~~k~~~l~~ll~~~--------~~~~~lIF~ns~~~~e~ 202 (203)
..|-.+.....++ ++.+|.+.+..+.+.. -.++||||+||++.|++
T Consensus 401 ~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~ 455 (830)
T COG1202 401 ERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHE 455 (830)
T ss_pred CCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHH
Confidence 1344444444445 4778999999988632 13589999999999874
No 67
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.64 E-value=1.9e-15 Score=131.53 Aligned_cols=179 Identities=18% Similarity=0.155 Sum_probs=128.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHH-HHHHHhCCC--------
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMDV-------- 71 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l-~~~~~~~~~-------- 71 (203)
+++|++||++||.|.++++.++...+ ++++++++||.+.. .+.. ..++||++||...+ .++++. +-
T Consensus 146 ~v~VvTptreLA~qdae~~~~l~~~l-Glsv~~i~gg~~~~--~r~~-~y~~dIvygT~~e~~FDyLrd-~~~~~~~~~~ 220 (656)
T PRK12898 146 PVHVITVNDYLAERDAELMRPLYEAL-GLTVGCVVEDQSPD--ERRA-AYGADITYCTNKELVFDYLRD-RLALGQRASD 220 (656)
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhc-CCEEEEEeCCCCHH--HHHH-HcCCCEEEECCCchhhhhccc-cccccccccc
Confidence 48999999999999999999999988 89999999997643 3333 35799999999998 466654 10
Q ss_pred -----------------ccCCCccEEEEcchhHhh-hh-----------------chHHHHHHHHHhCCCC---------
Q 028826 72 -----------------LDFRNLVILVLDEADRLL-DM-----------------GFQKQISYIISRLPKL--------- 107 (203)
Q Consensus 72 -----------------~~l~~v~~lViDEad~l~-~~-----------------~~~~~~~~il~~~~~~--------- 107 (203)
.-...+.+.||||+|.++ |. ........+...+...
T Consensus 221 ~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~ 300 (656)
T PRK12898 221 ARLALESLHGRSSRSTQLLLRGLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAE 300 (656)
T ss_pred hhhhhhhhccccCchhhhcccccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCC
Confidence 113567899999999975 31 0111111222211100
Q ss_pred --------------------------------------------------------------------------------
Q 028826 108 -------------------------------------------------------------------------------- 107 (203)
Q Consensus 108 -------------------------------------------------------------------------------- 107 (203)
T Consensus 301 ~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQa 380 (656)
T PRK12898 301 KRIELTEAGRARIAELAESLPPAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQM 380 (656)
T ss_pred CeEEEcHHHHHHHHHHhCcchhhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHH
Confidence
Q ss_pred ----------------------------CcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCC
Q 028826 108 ----------------------------RRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTP 159 (203)
Q Consensus 108 ----------------------------~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (203)
....++|+|.+....++.+.|..+++.|..... ..
T Consensus 381 ieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp-----------------~~ 443 (656)
T PRK12898 381 IEAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRP-----------------SQ 443 (656)
T ss_pred HHHhcCCCCCcCceeeeeehHHHHHHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCC-----------------cc
Confidence 056778999988888888888888766555443 23
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcC--CCCeEEEEeccCCccc
Q 028826 160 LGLHLEYLECESDKKPSQLVDLLIKN--KSKKIIMYVQHGNFSE 201 (203)
Q Consensus 160 ~~i~~~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~ns~~~~e 201 (203)
....+.++.++..+|...|.++++.. .++++||||+|.+.||
T Consensus 444 r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se 487 (656)
T PRK12898 444 RRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASE 487 (656)
T ss_pred ceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHH
Confidence 33556667778888999999999764 3578999999998876
No 68
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.63 E-value=2.1e-15 Score=129.23 Aligned_cols=175 Identities=18% Similarity=0.203 Sum_probs=121.4
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHH---HHHhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~---~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+|||+|--.|.....+.++.. |+++..+.++.+.++... .+..+..+++.-+||++..---. ..+.-..+.
T Consensus 60 TLVVSPLiSLM~DQV~~l~~~-----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~-~~L~~~~i~ 133 (590)
T COG0514 60 TLVVSPLISLMKDQVDQLEAA-----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFL-ELLKRLPIS 133 (590)
T ss_pred EEEECchHHHHHHHHHHHHHc-----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHH-HHHHhCCCc
Confidence 689999888876555555554 799999999877665444 44456789999999999743222 234467789
Q ss_pred EEEEcchhHhhhhc--hHHHHHHHH---HhCCCCCcEEEEeeecChhHHHHHHhcCC--CCeEEEeccCcccccccchhh
Q 028826 79 ILVLDEADRLLDMG--FQKQISYII---SRLPKLRRTGLFSATQTEAVEELSKAGLR--NPVRIEVRAESKSHHASASSQ 151 (203)
Q Consensus 79 ~lViDEad~l~~~~--~~~~~~~il---~~~~~~~q~i~~SAT~~~~v~~~~~~~l~--~~~~i~~~~~~~~~~~~~~~~ 151 (203)
++|||||||+.+|| |++++.++- ..+| +..++.+|||.++.+..-+...+. ++..+.....
T Consensus 134 l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfd----------- 201 (590)
T COG0514 134 LVAIDEAHCISQWGHDFRPDYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFD----------- 201 (590)
T ss_pred eEEechHHHHhhcCCccCHhHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCC-----------
Confidence 99999999999998 999988664 4444 789999999999999986665544 4444444333
Q ss_pred hhccCCCCCceeEEEEEcC-CCCcHHHHHHHHhcCCCCeEEEEeccCCcccC
Q 028826 152 QLASSKTPLGLHLEYLECE-SDKKPSQLVDLLIKNKSKKIIMYVQHGNFSED 202 (203)
Q Consensus 152 ~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~ll~~~~~~~~lIF~ns~~~~e~ 202 (203)
.+|+........ ...+...+.. ......++.||||.|++.||+
T Consensus 202 -------RpNi~~~v~~~~~~~~q~~fi~~-~~~~~~~~GIIYc~sRk~~E~ 245 (590)
T COG0514 202 -------RPNLALKVVEKGEPSDQLAFLAT-VLPQLSKSGIIYCLTRKKVEE 245 (590)
T ss_pred -------CchhhhhhhhcccHHHHHHHHHh-hccccCCCeEEEEeeHHhHHH
Confidence 455544443332 1233332222 125566789999999999885
No 69
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.59 E-value=5.7e-15 Score=130.85 Aligned_cols=174 Identities=18% Similarity=0.279 Sum_probs=118.6
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCC---ccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV---LDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~---~~l~~v~ 78 (203)
.+|++|+|+||..+.+.+.+=...+ |++|..++|+....+.+ + ..++|||+|||++--.-++ .. --++.|+
T Consensus 167 iVYIaPmKALa~Em~~~~~kkl~~~-gi~v~ELTGD~ql~~te--i--~~tqiiVTTPEKwDvvTRk-~~~d~~l~~~V~ 240 (1230)
T KOG0952|consen 167 IVYIAPMKALAAEMVDKFSKKLAPL-GISVRELTGDTQLTKTE--I--ADTQIIVTTPEKWDVVTRK-SVGDSALFSLVR 240 (1230)
T ss_pred EEEEechHHHHHHHHHHHhhhcccc-cceEEEecCcchhhHHH--H--HhcCEEEecccceeeeeee-eccchhhhhhee
Confidence 4899999999998877666555555 89999999998876555 3 2589999999997544333 22 2368999
Q ss_pred EEEEcchhHhhhhchHHHHHHHHHhC-------CCCCcEEEEeeecChhHHHHHHhcCCCC--eEEEeccCcccccccch
Q 028826 79 ILVLDEADRLLDMGFQKQISYIISRL-------PKLRRTGLFSATQTEAVEELSKAGLRNP--VRIEVRAESKSHHASAS 149 (203)
Q Consensus 79 ~lViDEad~l~~~~~~~~~~~il~~~-------~~~~q~i~~SAT~~~~v~~~~~~~l~~~--~~i~~~~~~~~~~~~~~ 149 (203)
++|+||+|.|-+. ..+.++.|+.+. -....++++|||+|+ .++++.+.--+| -.+..+.
T Consensus 241 LviIDEVHlLhd~-RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN-~eDvA~fL~vn~~~glfsFd~---------- 308 (1230)
T KOG0952|consen 241 LVIIDEVHLLHDD-RGPVLETIVARTLRLVESSQSMIRIVGLSATLPN-YEDVARFLRVNPYAGLFSFDQ---------- 308 (1230)
T ss_pred eEEeeeehhhcCc-ccchHHHHHHHHHHHHHhhhhheEEEEeeccCCC-HHHHHHHhcCCCccceeeecc----------
Confidence 9999999977543 455555555444 245689999999996 455555332232 2333333
Q ss_pred hhhhccCCCCCceeEEEEEcCCCC-----------cHHHHHHHHhcCCCCeEEEEeccCCccc
Q 028826 150 SQQLASSKTPLGLHLEYLECESDK-----------KPSQLVDLLIKNKSKKIIMYVQHGNFSE 201 (203)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~~~~~~~-----------k~~~l~~ll~~~~~~~~lIF~ns~~~~e 201 (203)
.-.|-.+.+.++..+..+ ..+...+.+ ..+.+++|||.+|.++-
T Consensus 309 ------~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~--~~g~qVlvFvhsR~~Ti 363 (1230)
T KOG0952|consen 309 ------RYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFL--QEGHQVLVFVHSRNETI 363 (1230)
T ss_pred ------cccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHH--HcCCeEEEEEecChHHH
Confidence 346778888888876651 123333333 25669999999998764
No 70
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.58 E-value=5.8e-15 Score=127.10 Aligned_cols=103 Identities=15% Similarity=0.136 Sum_probs=80.7
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
.+|||+||+||+.|+.+.+++++... +..+..+.+|.... ..++|+|+||+++..... ..+++++++
T Consensus 160 ~vLilvpt~eL~~Q~~~~l~~~~~~~-~~~~~~i~~g~~~~--------~~~~I~VaT~qsl~~~~~----~~~~~~~~i 226 (501)
T PHA02558 160 KVLIIVPTTSLVTQMIDDFVDYRLFP-REAMHKIYSGTAKD--------TDAPIVVSTWQSAVKQPK----EWFDQFGMV 226 (501)
T ss_pred eEEEEECcHHHHHHHHHHHHHhcccc-ccceeEEecCcccC--------CCCCEEEeeHHHHhhchh----hhccccCEE
Confidence 37999999999999999999986432 45666677775431 357999999999876442 246789999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChh
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~ 120 (203)
|+||||++.+. .+..++..+++.+|+++||||+++.
T Consensus 227 IvDEaH~~~~~----~~~~il~~~~~~~~~lGLTATp~~~ 262 (501)
T PHA02558 227 IVDECHLFTGK----SLTSIITKLDNCKFKFGLTGSLRDG 262 (501)
T ss_pred EEEchhcccch----hHHHHHHhhhccceEEEEeccCCCc
Confidence 99999999754 4566777787788999999999754
No 71
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.57 E-value=2.5e-14 Score=125.48 Aligned_cols=84 Identities=15% Similarity=0.215 Sum_probs=73.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHH-HHHHHhCC------Ccc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMD------VLD 73 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l-~~~~~~~~------~~~ 73 (203)
++.|++||++||.|.++++.++..++ |++++++.||.+..++... ..+||++|||++| .++++. + .+.
T Consensus 99 ~V~VvTpt~~LA~qdae~~~~l~~~L-GLsv~~i~g~~~~~~r~~~---y~~dIvyGT~~rlgfDyLrd-~~~~~~~~~~ 173 (745)
T TIGR00963 99 GVHVVTVNDYLAQRDAEWMGQVYRFL-GLSVGLILSGMSPEERREA---YACDITYGTNNELGFDYLRD-NMAHSKEEKV 173 (745)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccC-CCeEEEEeCCCCHHHHHHh---cCCCEEEECCCchhhHHHhc-ccccchhhhh
Confidence 47899999999999999999999998 8999999999887655433 3589999999999 899887 4 356
Q ss_pred CCCccEEEEcchhHhh
Q 028826 74 FRNLVILVLDEADRLL 89 (203)
Q Consensus 74 l~~v~~lViDEad~l~ 89 (203)
++++.++|+||+|.++
T Consensus 174 ~r~l~~aIIDEaDs~L 189 (745)
T TIGR00963 174 QRPFHFAIIDEVDSIL 189 (745)
T ss_pred ccccceeEeecHHHHh
Confidence 8999999999999987
No 72
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.56 E-value=3.8e-13 Score=100.94 Aligned_cols=136 Identities=37% Similarity=0.572 Sum_probs=110.9
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
++|++||++++.|+...+.++.... ........++....+....+.....+++++||+.+...+.. ......+++++|
T Consensus 57 ~l~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~-~~~~~~~~~~iI 134 (201)
T smart00487 57 VLVLVPTRELAEQWAEELKKLGPSL-GLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLEN-DLLELSNVDLVI 134 (201)
T ss_pred EEEEeCCHHHHHHHHHHHHHHhccC-CeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHc-CCcCHhHCCEEE
Confidence 6899999999999999999987654 33455566666545555555444349999999999999887 556788899999
Q ss_pred EcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEecc
Q 028826 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRA 139 (203)
Q Consensus 82 iDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~ 139 (203)
+||+|.+....+...+..++..+++..+++++|||.++........+..+...+....
T Consensus 135 iDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 135 LDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred EECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 9999999765788889999998888999999999999999999998888777766554
No 73
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.55 E-value=6.1e-14 Score=124.51 Aligned_cols=86 Identities=19% Similarity=0.181 Sum_probs=70.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHH-HHHHHhC-----CCccC
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERM-----DVLDF 74 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l-~~~~~~~-----~~~~l 74 (203)
+++|++||++||.|.+.++.++...+ |++++++.||.+..++.+.. .++||++|||+++ .++++.. ....+
T Consensus 121 ~v~VvTpt~~LA~qd~e~~~~l~~~l-Gl~v~~i~g~~~~~~~r~~~--y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~ 197 (790)
T PRK09200 121 GVHLITVNDYLAKRDAEEMGQVYEFL-GLTVGLNFSDIDDASEKKAI--YEADIIYTTNSELGFDYLRDNLADSKEDKVQ 197 (790)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhc-CCeEEEEeCCCCcHHHHHHh--cCCCEEEECCccccchhHHhccccchhhhcc
Confidence 47899999999999999999999998 99999999998843333332 4699999999999 5666541 11346
Q ss_pred CCccEEEEcchhHhh
Q 028826 75 RNLVILVLDEADRLL 89 (203)
Q Consensus 75 ~~v~~lViDEad~l~ 89 (203)
..+.++|+||||.++
T Consensus 198 r~~~~~IvDEaDsiL 212 (790)
T PRK09200 198 RPLNYAIIDEIDSIL 212 (790)
T ss_pred cccceEEEeccccce
Confidence 889999999999986
No 74
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.55 E-value=8.5e-14 Score=122.77 Aligned_cols=86 Identities=19% Similarity=0.206 Sum_probs=67.9
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcc---hHHHHHHHHhCCCeEEEeccHHH-HHHHHhC-----CCc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVE---VKADVKKIEEEGANLLIGTPGRL-YDIMERM-----DVL 72 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~---~~~~~~~l~~~~~~ilV~Tp~~l-~~~~~~~-----~~~ 72 (203)
++|++||++||.|..+++..+...+ |+++..+++|.. ...+.+.. ..++||++|||+++ .+++... ...
T Consensus 114 V~VVTpn~yLA~Rdae~m~~l~~~L-GLsv~~~~~~s~~~~~~~~~rr~-~y~~dIvygTp~~LgfDyLrD~l~~~~~~~ 191 (762)
T TIGR03714 114 AMLVTTNDYLAKRDAEEMGPVYEWL-GLTVSLGVVDDPDEEYDANEKRK-IYNSDIVYTTNSALGFDYLIDNLASNKEGK 191 (762)
T ss_pred eEEeCCCHHHHHHHHHHHHHHHhhc-CCcEEEEECCCCccccCHHHHHH-hCCCCEEEECchhhhhhHHHHHhhcchhhc
Confidence 7899999999999999999999988 899998887632 22223333 35799999999999 5666431 234
Q ss_pred cCCCccEEEEcchhHhh
Q 028826 73 DFRNLVILVLDEADRLL 89 (203)
Q Consensus 73 ~l~~v~~lViDEad~l~ 89 (203)
.+.++.++|+||||.|+
T Consensus 192 ~~r~l~~~IVDEaDsIL 208 (762)
T TIGR03714 192 FLRPFNYVIVDEVDSVL 208 (762)
T ss_pred ccccCcEEEEecHhhHh
Confidence 57889999999999996
No 75
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.54 E-value=8.2e-14 Score=125.42 Aligned_cols=128 Identities=23% Similarity=0.238 Sum_probs=102.7
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
++|.+|+|+|.+|.++.+....... .=.++.++|+.+. +....++|.|.+-|..|+.. ++..+.++.++|
T Consensus 165 viYTsPIKALsNQKyrdl~~~fgdv-~~~vGL~TGDv~I--------N~~A~clvMTTEILRnMlyr-g~~~~~~i~~Vi 234 (1041)
T COG4581 165 VIYTSPIKALSNQKYRDLLAKFGDV-ADMVGLMTGDVSI--------NPDAPCLVMTTEILRNMLYR-GSESLRDIEWVV 234 (1041)
T ss_pred eEeccchhhhhhhHHHHHHHHhhhh-hhhccceecceee--------CCCCceEEeeHHHHHHHhcc-CcccccccceEE
Confidence 6899999999999999887764322 1234677777664 57789999999999999999 888999999999
Q ss_pred EcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcC---CCCeEEEeccC
Q 028826 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGL---RNPVRIEVRAE 140 (203)
Q Consensus 82 iDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l---~~~~~i~~~~~ 140 (203)
+||+|.+-+......++.++-.+|...|++++|||+|+. .+|..|.- ..|..+.....
T Consensus 235 FDEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~LSATv~N~-~EF~~Wi~~~~~~~~~vv~t~~ 295 (1041)
T COG4581 235 FDEVHYIGDRERGVVWEEVIILLPDHVRFVFLSATVPNA-EEFAEWIQRVHSQPIHVVSTEH 295 (1041)
T ss_pred EEeeeeccccccchhHHHHHHhcCCCCcEEEEeCCCCCH-HHHHHHHHhccCCCeEEEeecC
Confidence 999999988877888889999999999999999999976 55555433 34555554443
No 76
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.54 E-value=1.5e-14 Score=124.56 Aligned_cols=169 Identities=19% Similarity=0.203 Sum_probs=128.2
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
+||-+|.++|.+|-|+++..=.+. |+..+|+.+. +..+..+|.|.+.|..|+.+ ++--+..+.|+|
T Consensus 175 VIYTSPIKALSNQKYREl~~EF~D-----VGLMTGDVTI--------nP~ASCLVMTTEILRsMLYR-GSEvmrEVaWVI 240 (1041)
T KOG0948|consen 175 VIYTSPIKALSNQKYRELLEEFKD-----VGLMTGDVTI--------NPDASCLVMTTEILRSMLYR-GSEVMREVAWVI 240 (1041)
T ss_pred EEeeChhhhhcchhHHHHHHHhcc-----cceeecceee--------CCCCceeeeHHHHHHHHHhc-cchHhheeeeEE
Confidence 688899999999999988775433 4566776654 45678999999999999999 877789999999
Q ss_pred EcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhc---CCCCeEEEeccCcccccccchhhhhccCCC
Q 028826 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAG---LRNPVRIEVRAESKSHHASASSQQLASSKT 158 (203)
Q Consensus 82 iDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~---l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (203)
+||+|.|=|....-.++.-+-.+|.+...+++|||+|++ .+|++|. -..|..|..++. .
T Consensus 241 FDEIHYMRDkERGVVWEETIIllP~~vr~VFLSATiPNA-~qFAeWI~~ihkQPcHVVYTdy-----------------R 302 (1041)
T KOG0948|consen 241 FDEIHYMRDKERGVVWEETIILLPDNVRFVFLSATIPNA-RQFAEWICHIHKQPCHVVYTDY-----------------R 302 (1041)
T ss_pred eeeehhccccccceeeeeeEEeccccceEEEEeccCCCH-HHHHHHHHHHhcCCceEEeecC-----------------C
Confidence 999999977665556666677889999999999999986 5666653 346777766555 6
Q ss_pred CCceeEEEEEcC---------CC-----Cc--------------------------------------HHHHHHHHhcCC
Q 028826 159 PLGLHLEYLECE---------SD-----KK--------------------------------------PSQLVDLLIKNK 186 (203)
Q Consensus 159 ~~~i~~~~~~~~---------~~-----~k--------------------------------------~~~l~~ll~~~~ 186 (203)
|..++||.+... ++ +. +-.+...+-..+
T Consensus 303 PTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~ 382 (1041)
T KOG0948|consen 303 PTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERN 382 (1041)
T ss_pred CCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhc
Confidence 777888855532 11 11 123444444556
Q ss_pred CCeEEEEeccCCcccC
Q 028826 187 SKKIIMYVQHGNFSED 202 (203)
Q Consensus 187 ~~~~lIF~ns~~~~e~ 202 (203)
+.|+|||+-|++.||.
T Consensus 383 ~~PVIvFSFSkkeCE~ 398 (1041)
T KOG0948|consen 383 YLPVIVFSFSKKECEA 398 (1041)
T ss_pred CCceEEEEecHhHHHH
Confidence 7799999999999984
No 77
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.54 E-value=4e-14 Score=124.61 Aligned_cols=114 Identities=25% Similarity=0.240 Sum_probs=97.0
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
++|-+|.++|.+|-++.++.-.... ..++|+... +..+.++|+|.+.|..|+++ +.--+.++.++|
T Consensus 343 ~iYTSPIKALSNQKfRDFk~tF~Dv-----gLlTGDvqi--------nPeAsCLIMTTEILRsMLYr-gadliRDvE~VI 408 (1248)
T KOG0947|consen 343 TIYTSPIKALSNQKFRDFKETFGDV-----GLLTGDVQI--------NPEASCLIMTTEILRSMLYR-GADLIRDVEFVI 408 (1248)
T ss_pred eEecchhhhhccchHHHHHHhcccc-----ceeecceee--------CCCcceEeehHHHHHHHHhc-ccchhhccceEE
Confidence 6889999999999999998865443 267777553 45678999999999999998 777789999999
Q ss_pred EcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCC
Q 028826 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLR 130 (203)
Q Consensus 82 iDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~ 130 (203)
+||+|.+-|......++.++-++|+..++|++|||.|+. .+|+.|.-+
T Consensus 409 FDEVHYiND~eRGvVWEEViIMlP~HV~~IlLSATVPN~-~EFA~WIGR 456 (1248)
T KOG0947|consen 409 FDEVHYINDVERGVVWEEVIIMLPRHVNFILLSATVPNT-LEFADWIGR 456 (1248)
T ss_pred EeeeeecccccccccceeeeeeccccceEEEEeccCCCh-HHHHHHhhh
Confidence 999999988888888899999999999999999999975 667776544
No 78
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.52 E-value=2e-13 Score=125.91 Aligned_cols=159 Identities=18% Similarity=0.234 Sum_probs=105.0
Q ss_pred cHHHHHHHHHHHHH-hhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEEEcchh
Q 028826 8 TRELSAQIYHVAQP-FISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEAD 86 (203)
Q Consensus 8 treLa~Qi~~~~~~-l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lViDEad 86 (203)
+++||.|+.+++.. ++... |+++ ...+ +. ..+++|+|+||++|++.+.. + ..+++++++||||||
T Consensus 131 ArsLA~RVA~El~~~lG~~V-GY~v----rf~~---~~----s~~t~I~v~TpG~LL~~l~~-d-~~Ls~~~~IIIDEAH 196 (1294)
T PRK11131 131 ARTVANRIAEELETELGGCV-GYKV----RFND---QV----SDNTMVKLMTDGILLAEIQQ-D-RLLMQYDTIIIDEAH 196 (1294)
T ss_pred HHHHHHHHHHHHhhhhccee-ceee----cCcc---cc----CCCCCEEEEChHHHHHHHhc-C-CccccCcEEEecCcc
Confidence 68999999998875 43332 3332 1111 11 35789999999999999876 3 459999999999999
Q ss_pred -HhhhhchHH-HHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCCCceeE
Q 028826 87 -RLLDMGFQK-QISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHL 164 (203)
Q Consensus 87 -~l~~~~~~~-~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 164 (203)
++++.+|.. .++.++... ++.|+|++|||++. ..+.+.+...|. +.+... ...+.+
T Consensus 197 ERsLn~DfLLg~Lk~lL~~r-pdlKvILmSATid~--e~fs~~F~~apv-I~V~Gr------------------~~pVei 254 (1294)
T PRK11131 197 ERSLNIDFILGYLKELLPRR-PDLKVIITSATIDP--ERFSRHFNNAPI-IEVSGR------------------TYPVEV 254 (1294)
T ss_pred ccccccchHHHHHHHhhhcC-CCceEEEeeCCCCH--HHHHHHcCCCCE-EEEcCc------------------cccceE
Confidence 578877654 344544433 46799999999975 467776655553 444332 123566
Q ss_pred EEEEcCCCC---cHHHHHHHH---h---cCCCCeEEEEeccCCcccC
Q 028826 165 EYLECESDK---KPSQLVDLL---I---KNKSKKIIMYVQHGNFSED 202 (203)
Q Consensus 165 ~~~~~~~~~---k~~~l~~ll---~---~~~~~~~lIF~ns~~~~e~ 202 (203)
+|......+ +.+.+..++ . ....+.+|||||+...+++
T Consensus 255 ~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~ 301 (1294)
T PRK11131 255 RYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRD 301 (1294)
T ss_pred EEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHH
Confidence 776654322 233333333 2 3456789999999887653
No 79
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.52 E-value=1.1e-12 Score=116.37 Aligned_cols=113 Identities=18% Similarity=0.259 Sum_probs=81.3
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHH---HHHhCCCeEEEeccHHHHHHHHhCCCccCCCc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~---~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v 77 (203)
++||++||++|+.|+.+.+++.. +.++..++||.+..++.. .+..+.++|+||||+.+. ..++++
T Consensus 192 ~vLvLvPt~~L~~Q~~~~l~~~f----g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~--------~p~~~l 259 (679)
T PRK05580 192 QALVLVPEIALTPQMLARFRARF----GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF--------LPFKNL 259 (679)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHh----CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc--------ccccCC
Confidence 48999999999999999888753 578999999987654433 334567899999998763 346889
Q ss_pred cEEEEcchhHhhhhc-----h-HHHHHHHHHhCCCCCcEEEEeeecChhHHHHHH
Q 028826 78 VILVLDEADRLLDMG-----F-QKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (203)
Q Consensus 78 ~~lViDEad~l~~~~-----~-~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~ 126 (203)
+++|+||+|...-.. | ..++. +.+....+.|++++|||.+.+....+.
T Consensus 260 ~liVvDEeh~~s~~~~~~p~y~~r~va-~~ra~~~~~~~il~SATps~~s~~~~~ 313 (679)
T PRK05580 260 GLIIVDEEHDSSYKQQEGPRYHARDLA-VVRAKLENIPVVLGSATPSLESLANAQ 313 (679)
T ss_pred CEEEEECCCccccccCcCCCCcHHHHH-HHHhhccCCCEEEEcCCCCHHHHHHHh
Confidence 999999999753211 1 12222 223334688999999998766555443
No 80
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.50 E-value=2.9e-13 Score=120.20 Aligned_cols=83 Identities=17% Similarity=0.285 Sum_probs=72.4
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHH-HHHHHhCCC------ccC
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMDV------LDF 74 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l-~~~~~~~~~------~~l 74 (203)
+-|++||.+||.|.++++..+...+ |++++++.||.+..++.... .+||++|||+++ .++++. +. ...
T Consensus 125 V~IvTpn~yLA~rd~e~~~~l~~~L-Glsv~~i~~~~~~~er~~~y---~~dI~ygT~~elgfDyLrd-~~~~~~~~~~~ 199 (830)
T PRK12904 125 VHVVTVNDYLAKRDAEWMGPLYEFL-GLSVGVILSGMSPEERREAY---AADITYGTNNEFGFDYLRD-NMVFSLEERVQ 199 (830)
T ss_pred EEEEecCHHHHHHHHHHHHHHHhhc-CCeEEEEcCCCCHHHHHHhc---CCCeEEECCcchhhhhhhc-ccccchhhhcc
Confidence 4589999999999999999999998 99999999998887766554 489999999999 889986 32 236
Q ss_pred CCccEEEEcchhHhh
Q 028826 75 RNLVILVLDEADRLL 89 (203)
Q Consensus 75 ~~v~~lViDEad~l~ 89 (203)
..+.++|+||||.++
T Consensus 200 r~~~~aIvDEaDsiL 214 (830)
T PRK12904 200 RGLNYAIVDEVDSIL 214 (830)
T ss_pred cccceEEEechhhhe
Confidence 789999999999986
No 81
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.49 E-value=3.1e-12 Score=110.05 Aligned_cols=112 Identities=19% Similarity=0.249 Sum_probs=79.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHH---HHHhCCCeEEEeccHHHHHHHHhCCCccCCCc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~---~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v 77 (203)
++||++|+++|+.|+++.+++.. +.++..++|+.+..+..+ .+..+.++|+|||+..+. ..++++
T Consensus 27 ~vLvlvP~i~L~~Q~~~~l~~~f----~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf--------~p~~~l 94 (505)
T TIGR00595 27 SVLVLVPEIALTPQMIQRFKYRF----GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF--------LPFKNL 94 (505)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHh----CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc--------CcccCC
Confidence 48999999999999999888753 567888899876554433 334467899999998763 246789
Q ss_pred cEEEEcchhHhhhh---c--h-HHHHHHHHHhCCCCCcEEEEeeecChhHHHHH
Q 028826 78 VILVLDEADRLLDM---G--F-QKQISYIISRLPKLRRTGLFSATQTEAVEELS 125 (203)
Q Consensus 78 ~~lViDEad~l~~~---~--~-~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~ 125 (203)
+++||||.|...-+ + | ..++....+.. .+.+++++|||.+.+....+
T Consensus 95 ~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~-~~~~vil~SATPsles~~~~ 147 (505)
T TIGR00595 95 GLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKK-FNCPVVLGSATPSLESYHNA 147 (505)
T ss_pred CEEEEECCCccccccccCCCCcHHHHHHHHHHh-cCCCEEEEeCCCCHHHHHHH
Confidence 99999999976422 1 1 12333344444 57899999999665444333
No 82
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.49 E-value=1.1e-13 Score=123.32 Aligned_cols=83 Identities=16% Similarity=0.309 Sum_probs=74.4
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHH-HHHHHhCCCccCC-----
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMDVLDFR----- 75 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l-~~~~~~~~~~~l~----- 75 (203)
++||+||+|||.|+.+++..+.+++ ++++.+++||.+..++...+ +|||+||||++| .++++. +.+.++
T Consensus 138 v~IVTpTrELA~Qdae~m~~L~k~l-GLsV~~i~GG~~~~eq~~~y---~~DIVygTPgRLgfDyLrd-~~~~~~~~~~v 212 (970)
T PRK12899 138 VHLVTVNDYLAQRDCEWVGSVLRWL-GLTTGVLVSGSPLEKRKEIY---QCDVVYGTASEFGFDYLRD-NSIATRKEEQV 212 (970)
T ss_pred eEEEeCCHHHHHHHHHHHHHHHhhc-CCeEEEEeCCCCHHHHHHHc---CCCEEEECCChhHHHHhhC-CCCCcCHHHhh
Confidence 6899999999999999999999988 89999999999988876554 599999999999 999998 667766
Q ss_pred --CccEEEEcchhHhh
Q 028826 76 --NLVILVLDEADRLL 89 (203)
Q Consensus 76 --~v~~lViDEad~l~ 89 (203)
.+.++|+||||.|+
T Consensus 213 qr~~~~~IIDEADsmL 228 (970)
T PRK12899 213 GRGFYFAIIDEVDSIL 228 (970)
T ss_pred cccccEEEEechhhhh
Confidence 45899999999987
No 83
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.43 E-value=4e-12 Score=114.79 Aligned_cols=178 Identities=19% Similarity=0.173 Sum_probs=123.0
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHH---HHHhC--CCeEEEeccHHHHHHHHhC-CCccCC
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEE--GANLLIGTPGRLYDIMERM-DVLDFR 75 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~---~l~~~--~~~ilV~Tp~~l~~~~~~~-~~~~l~ 75 (203)
.|||.|-..|.. +++.+|.+. +++...+.++....++.. .+..+ ..+|+..|||++..--... ...++.
T Consensus 307 tvVISPL~SLm~---DQv~~L~~~--~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~ 381 (941)
T KOG0351|consen 307 TVVISPLISLMQ---DQVTHLSKK--GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLY 381 (941)
T ss_pred eEEeccHHHHHH---HHHHhhhhc--CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhcc
Confidence 589999777665 666666443 899999999888764433 34344 6899999999986422110 222344
Q ss_pred C---ccEEEEcchhHhhhhc--hHHHHHHHHHhC--CCCCcEEEEeeecChhHHHHHHh--cCCCCeEEEeccCcccccc
Q 028826 76 N---LVILVLDEADRLLDMG--FQKQISYIISRL--PKLRRTGLFSATQTEAVEELSKA--GLRNPVRIEVRAESKSHHA 146 (203)
Q Consensus 76 ~---v~~lViDEad~l~~~~--~~~~~~~il~~~--~~~~q~i~~SAT~~~~v~~~~~~--~l~~~~~i~~~~~~~~~~~ 146 (203)
. +.++||||||+...|| |+++++++-... .....++.+|||.+..+..-+-. .++++.++..
T Consensus 382 ~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~--------- 452 (941)
T KOG0351|consen 382 ARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKS--------- 452 (941)
T ss_pred CCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecc---------
Confidence 4 8999999999999998 888887664333 23478999999999998874443 4456664433
Q ss_pred cchhhhhccCCCCCceeEEEEEcCCCCcHHHHHHHHh-cCCCCeEEEEeccCCcccC
Q 028826 147 SASSQQLASSKTPLGLHLEYLECESDKKPSQLVDLLI-KNKSKKIIMYVQHGNFSED 202 (203)
Q Consensus 147 ~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~-~~~~~~~lIF~ns~~~~e~ 202 (203)
...++|+...+..-...+....+...++ .+..+.+||||.++++||+
T Consensus 453 ---------sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~ 500 (941)
T KOG0351|consen 453 ---------SFNRPNLKYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKECEQ 500 (941)
T ss_pred ---------cCCCCCceEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcchHHH
Confidence 3356777666655443344444444444 4577899999999999984
No 84
>PRK13766 Hef nuclease; Provisional
Probab=99.38 E-value=2.1e-11 Score=110.27 Aligned_cols=115 Identities=18% Similarity=0.217 Sum_probs=87.7
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
+|||+||++|+.|+.+.++++.... +.++..+.|+.+..+... + ..+++|+|+||+.+...+.. +.+++.+++++|
T Consensus 61 vLvl~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~~g~~~~~~r~~-~-~~~~~iiv~T~~~l~~~l~~-~~~~~~~~~liV 136 (773)
T PRK13766 61 VLILAPTKPLVEQHAEFFRKFLNIP-EEKIVVFTGEVSPEKRAE-L-WEKAKVIVATPQVIENDLIA-GRISLEDVSLLI 136 (773)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhCCC-CceEEEEeCCCCHHHHHH-H-HhCCCEEEECHHHHHHHHHc-CCCChhhCcEEE
Confidence 7999999999999999999986432 467888888877654332 2 24689999999999877666 778899999999
Q ss_pred EcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChh
Q 028826 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120 (203)
Q Consensus 82 iDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~ 120 (203)
+||||++........+........+.++++++|||....
T Consensus 137 vDEaH~~~~~~~~~~i~~~~~~~~~~~~il~lTaTP~~~ 175 (773)
T PRK13766 137 FDEAHRAVGNYAYVYIAERYHEDAKNPLVLGLTASPGSD 175 (773)
T ss_pred EECCccccccccHHHHHHHHHhcCCCCEEEEEEcCCCCC
Confidence 999999875443344444444445677899999997543
No 85
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.38 E-value=3.4e-12 Score=115.23 Aligned_cols=175 Identities=16% Similarity=0.194 Sum_probs=118.2
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCc-cCCCccEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVL-DFRNLVIL 80 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~-~l~~v~~l 80 (203)
.+|++|.++|++.+...+.+-.+.+ |++|...+|+.....+. -.+.+|+||||++.-..-++.+.. ..+-++.+
T Consensus 367 IVYIAPmKaLvqE~VgsfSkRla~~-GI~V~ElTgD~~l~~~q----ieeTqVIV~TPEK~DiITRk~gdraY~qlvrLl 441 (1674)
T KOG0951|consen 367 IVYIAPMKALVQEMVGSFSKRLAPL-GITVLELTGDSQLGKEQ----IEETQVIVTTPEKWDIITRKSGDRAYEQLVRLL 441 (1674)
T ss_pred EEEEeeHHHHHHHHHHHHHhhcccc-CcEEEEecccccchhhh----hhcceeEEeccchhhhhhcccCchhHHHHHHHH
Confidence 4799999999987766554444555 89999999987754333 146789999999975554442222 24578999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCC-------CCCcEEEEeeecChh--HHHHHHhcCCCCeEEEeccCcccccccchhh
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLP-------KLRRTGLFSATQTEA--VEELSKAGLRNPVRIEVRAESKSHHASASSQ 151 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~-------~~~q~i~~SAT~~~~--v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~ 151 (203)
|+||.|.+-| ...+.++.+..+.. ..+..+++|||+|+= |..|+.-. .+-.+..+.+
T Consensus 442 IIDEIHLLhD-dRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~--~~glf~fd~s----------- 507 (1674)
T KOG0951|consen 442 IIDEIHLLHD-DRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVD--PEGLFYFDSS----------- 507 (1674)
T ss_pred hhhhhhhccc-ccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccC--cccccccCcc-----------
Confidence 9999997643 35666666655442 367899999999973 33333321 2344444444
Q ss_pred hhccCCCCCceeEEEEEcCCCCcHHH--------HHHHHhcCCCCeEEEEeccCCcc
Q 028826 152 QLASSKTPLGLHLEYLECESDKKPSQ--------LVDLLIKNKSKKIIMYVQHGNFS 200 (203)
Q Consensus 152 ~~~~~~~~~~i~~~~~~~~~~~k~~~--------l~~ll~~~~~~~~lIF~ns~~~~ 200 (203)
-.|..+.|.|+.+.+++.... ..+.++.-+.+++||||.||+.+
T Consensus 508 -----yRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET 559 (1674)
T KOG0951|consen 508 -----YRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKET 559 (1674)
T ss_pred -----cCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHH
Confidence 367889999999887653333 23344455668999999999875
No 86
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.36 E-value=4.2e-12 Score=113.30 Aligned_cols=84 Identities=18% Similarity=0.298 Sum_probs=73.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHH-HHHHHhCC-CccC----
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMD-VLDF---- 74 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l-~~~~~~~~-~~~l---- 74 (203)
.++|++||++||.|.++++..+...+ |+++.+++||.+..++.... .+||++|||++| .++++. + .+++
T Consensus 125 ~V~VvTpn~yLA~qd~e~m~~l~~~l-GLtv~~i~gg~~~~~r~~~y---~~dIvygT~grlgfDyLrd-~~~~~~~~~v 199 (896)
T PRK13104 125 GVHIVTVNDYLAKRDSQWMKPIYEFL-GLTVGVIYPDMSHKEKQEAY---KADIVYGTNNEYGFDYLRD-NMAFSLTDKV 199 (896)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccc-CceEEEEeCCCCHHHHHHHh---CCCEEEECChhhhHHHHhc-CCccchHhhh
Confidence 37899999999999999999999988 89999999998877665443 689999999999 899987 4 4555
Q ss_pred -CCccEEEEcchhHhh
Q 028826 75 -RNLVILVLDEADRLL 89 (203)
Q Consensus 75 -~~v~~lViDEad~l~ 89 (203)
..+.++|+||||.|+
T Consensus 200 ~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 200 QRELNFAIVDEVDSIL 215 (896)
T ss_pred ccccceEEeccHhhhh
Confidence 589999999999986
No 87
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.35 E-value=5e-11 Score=99.43 Aligned_cols=135 Identities=16% Similarity=0.177 Sum_probs=102.0
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
+|+++||+-|+.|-...++++..- |.-.++.++|....++....- ...+|+|+||.-+..=+.. |.+|+.++.++|
T Consensus 61 vlfLAPTKPLV~Qh~~~~~~v~~i-p~~~i~~ltGev~p~~R~~~w--~~~kVfvaTPQvveNDl~~-Grid~~dv~~li 136 (542)
T COG1111 61 VLFLAPTKPLVLQHAEFCRKVTGI-PEDEIAALTGEVRPEEREELW--AKKKVFVATPQVVENDLKA-GRIDLDDVSLLI 136 (542)
T ss_pred EEEecCCchHHHHHHHHHHHHhCC-ChhheeeecCCCChHHHHHHH--hhCCEEEeccHHHHhHHhc-CccChHHceEEE
Confidence 799999999999999999999643 467888999988876544432 3578999999999877777 899999999999
Q ss_pred EcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHH---HHHhcCCCCeEEEeccC
Q 028826 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEE---LSKAGLRNPVRIEVRAE 140 (203)
Q Consensus 82 iDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~---~~~~~l~~~~~i~~~~~ 140 (203)
+||||+-....-...+.+..-...+++.++++|||..+..+. .++..--+.+.+....+
T Consensus 137 fDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d 198 (542)
T COG1111 137 FDEAHRAVGNYAYVFVAKEYLRSAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEED 198 (542)
T ss_pred echhhhccCcchHHHHHHHHHHhccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCC
Confidence 999999866554444444444445788999999998776554 44444445555555544
No 88
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.34 E-value=6.1e-11 Score=83.97 Aligned_cols=112 Identities=38% Similarity=0.588 Sum_probs=84.5
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
++|++|++.++.|..+.+.+.... +..+..+.++.......... ..+.+|+++|++.+...... .........++|
T Consensus 33 ~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~i~i~t~~~~~~~~~~-~~~~~~~~~~ii 108 (144)
T cd00046 33 VLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLL-SGKTDIVVGTPGRLLDELER-LKLSLKKLDLLI 108 (144)
T ss_pred EEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHh-cCCCCEEEECcHHHHHHHHc-CCcchhcCCEEE
Confidence 689999999999999999888654 57777777776655444333 46899999999999987776 444566788999
Q ss_pred EcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeec
Q 028826 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117 (203)
Q Consensus 82 iDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~ 117 (203)
+||+|.+....................+++++|||.
T Consensus 109 iDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 109 LDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred EeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 999999876544433223334446788999999994
No 89
>PRK09694 helicase Cas3; Provisional
Probab=99.25 E-value=2.3e-10 Score=103.44 Aligned_cols=126 Identities=13% Similarity=0.119 Sum_probs=81.3
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhc-CCCceEEEEEcCcchHHHH---------------------HHHHh--C---CCeE
Q 028826 2 GMIISPTRELSAQIYHVAQPFIST-LPDVKSMLLVGGVEVKADV---------------------KKIEE--E---GANL 54 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~-~~~i~~~~~~~g~~~~~~~---------------------~~l~~--~---~~~i 54 (203)
.+|..||++.++|+++.+.++... +++..+...+|+....... .++.+ + -.+|
T Consensus 334 i~~aLPT~Atan~m~~Rl~~~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi 413 (878)
T PRK09694 334 IIFALPTQATANAMLSRLEALASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQI 413 (878)
T ss_pred EEEECcHHHHHHHHHHHHHHHHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCE
Confidence 578899999999999999876543 2245677777765422111 12211 1 1689
Q ss_pred EEeccHHHHHHHHhCCCccCCC----ccEEEEcchhHhhhhchHHHHHHHHHhCC-CCCcEEEEeeecChhHHH-HHHhc
Q 028826 55 LIGTPGRLYDIMERMDVLDFRN----LVILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSATQTEAVEE-LSKAG 128 (203)
Q Consensus 55 lV~Tp~~l~~~~~~~~~~~l~~----v~~lViDEad~l~~~~~~~~~~~il~~~~-~~~q~i~~SAT~~~~v~~-~~~~~ 128 (203)
+|||+..++..+-..+...+.. =+.|||||+|.+ +......+..+++.+. ....+|++|||+|....+ +.+.+
T Consensus 414 ~V~TiDQlL~a~l~~kh~~lR~~~La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~ 492 (878)
T PRK09694 414 GVCTIDQVLISVLPVKHRFIRGFGLGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTY 492 (878)
T ss_pred EEcCHHHHHHHHHccchHHHHHHhhccCeEEEechhhC-CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHh
Confidence 9999999885433212222222 258999999987 4444555666666553 356799999999988765 44433
No 90
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.22 E-value=1.3e-10 Score=94.09 Aligned_cols=181 Identities=18% Similarity=0.184 Sum_probs=127.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHH---HHH--hCCCeEEEeccHHHHH---HHHh-CCC
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIE--EEGANLLIGTPGRLYD---IMER-MDV 71 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~---~l~--~~~~~ilV~Tp~~l~~---~~~~-~~~ 71 (203)
++||++|.-.|.....-+++.| |+....+....+.++..+ .+. +....+|..||+++.. ++.+ -+.
T Consensus 136 ~alvi~plislmedqil~lkql-----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka 210 (695)
T KOG0353|consen 136 FALVICPLISLMEDQILQLKQL-----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKA 210 (695)
T ss_pred ceEeechhHHHHHHHHHHHHHh-----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHH
Confidence 6899999888876555666666 666666666655543322 121 2567899999999864 2222 146
Q ss_pred ccCCCccEEEEcchhHhhhhc--hHHHHHH--HHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCccccccc
Q 028826 72 LDFRNLVILVLDEADRLLDMG--FQKQISY--IISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHAS 147 (203)
Q Consensus 72 ~~l~~v~~lViDEad~l~~~~--~~~~~~~--il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~ 147 (203)
+....++.+.+||+|+-..|| |++++.. ++.+-.+...++.++||.++++..-++..+--..-+....
T Consensus 211 ~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a-------- 282 (695)
T KOG0353|consen 211 LEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRA-------- 282 (695)
T ss_pred hhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeec--------
Confidence 778899999999999998887 8888764 4555557889999999999998887776655322222222
Q ss_pred chhhhhccCCCCCceeEEEEEcCC--CCcHHHHHHHHh-cCCCCeEEEEeccCCcccC
Q 028826 148 ASSQQLASSKTPLGLHLEYLECES--DKKPSQLVDLLI-KNKSKKIIMYVQHGNFSED 202 (203)
Q Consensus 148 ~~~~~~~~~~~~~~i~~~~~~~~~--~~k~~~l~~ll~-~~~~~~~lIF~ns~~~~e~ 202 (203)
....+++...+..-++ ++=++.+.++++ .+.++..||||-|+++||.
T Consensus 283 --------~fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ek 332 (695)
T KOG0353|consen 283 --------GFNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEK 332 (695)
T ss_pred --------ccCCCCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHH
Confidence 2345666666655544 345667777776 5678899999999999984
No 91
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.16 E-value=1e-09 Score=102.13 Aligned_cols=130 Identities=18% Similarity=0.221 Sum_probs=88.1
Q ss_pred hCCCeEEEeccHHHHHHHHhCCCccCCCccEEEEcchh-HhhhhchHHH-HHHHHHhCCCCCcEEEEeeecChhHHHHHH
Q 028826 49 EEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEAD-RLLDMGFQKQ-ISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (203)
Q Consensus 49 ~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lViDEad-~l~~~~~~~~-~~~il~~~~~~~q~i~~SAT~~~~v~~~~~ 126 (203)
.....|.++|||+|+..+.. ...+++++++|||||| ++++.++.-. ++.++... +..|++++|||++. ..+.+
T Consensus 154 s~~T~I~~~TdGiLLr~l~~--d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~r-pdLKlIlmSATld~--~~fa~ 228 (1283)
T TIGR01967 154 SSNTLVKLMTDGILLAETQQ--DRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRR-PDLKIIITSATIDP--ERFSR 228 (1283)
T ss_pred CCCceeeeccccHHHHHhhh--CcccccCcEEEEcCcchhhccchhHHHHHHHHHhhC-CCCeEEEEeCCcCH--HHHHH
Confidence 35688999999999998875 3458999999999999 5888776543 66666554 47899999999974 56777
Q ss_pred hcCCCCeEEEeccCcccccccchhhhhccCCCCCceeEEEEEcCCC------CcHHHHHHHHh---cCCCCeEEEEeccC
Q 028826 127 AGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESD------KKPSQLVDLLI---KNKSKKIIMYVQHG 197 (203)
Q Consensus 127 ~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------~k~~~l~~ll~---~~~~~~~lIF~ns~ 197 (203)
.+...|+ +.+... ...+..+|...... ++.+.+...+. ....+.+|||+++.
T Consensus 229 ~F~~apv-I~V~Gr------------------~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~ 289 (1283)
T TIGR01967 229 HFNNAPI-IEVSGR------------------TYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGE 289 (1283)
T ss_pred HhcCCCE-EEECCC------------------cccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCH
Confidence 6655554 444322 12344555544321 24444444443 23457899999998
Q ss_pred CcccC
Q 028826 198 NFSED 202 (203)
Q Consensus 198 ~~~e~ 202 (203)
..+++
T Consensus 290 ~EI~~ 294 (1283)
T TIGR01967 290 REIRD 294 (1283)
T ss_pred HHHHH
Confidence 77653
No 92
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.11 E-value=8.3e-09 Score=86.55 Aligned_cols=138 Identities=17% Similarity=0.244 Sum_probs=91.5
Q ss_pred CCeEEEeccHHHHHHHHh----CC-CccCCCccEEEEcchhHhhh--hchHHHHHHHHHhCCC-----------------
Q 028826 51 GANLLIGTPGRLYDIMER----MD-VLDFRNLVILVLDEADRLLD--MGFQKQISYIISRLPK----------------- 106 (203)
Q Consensus 51 ~~~ilV~Tp~~l~~~~~~----~~-~~~l~~v~~lViDEad~l~~--~~~~~~~~~il~~~~~----------------- 106 (203)
.+||||++|--|...+.. .+ .-.|+++.++|+|.||.|+- |.+...+-.-+...|+
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ldg 210 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLDG 210 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcC
Confidence 489999999999888873 11 23389999999999999863 4444444334444443
Q ss_pred ----CCcEEEEeeecChhHHHHHHhcCCCCe-EEEeccCcccccccchhhhhccCCCCCceeEEEEEcCCCC-------c
Q 028826 107 ----LRRTGLFSATQTEAVEELSKAGLRNPV-RIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDK-------K 174 (203)
Q Consensus 107 ----~~q~i~~SAT~~~~v~~~~~~~l~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------k 174 (203)
-+|++++|+..++++..+.+.++.+.. .+.+...... .+.......++.|.|...+..+ +
T Consensus 211 ~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~--------~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~R 282 (442)
T PF06862_consen 211 QAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEA--------SGVISQVVVQVRQVFQRFDCSSPADDPDAR 282 (442)
T ss_pred cchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeecccc--------ceeeeccccCCceEEEEecCCCcchhhhHH
Confidence 249999999999999999998777643 4444333210 1112356678888888765432 3
Q ss_pred HHH----HHHHHh-cCCCCeEEEEecc
Q 028826 175 PSQ----LVDLLI-KNKSKKIIMYVQH 196 (203)
Q Consensus 175 ~~~----l~~ll~-~~~~~~~lIF~ns 196 (203)
++. ++..+. ....+.+|||++|
T Consensus 283 f~yF~~~iLP~l~~~~~~~~~LIfIPS 309 (442)
T PF06862_consen 283 FKYFTKKILPQLKRDSKMSGTLIFIPS 309 (442)
T ss_pred HHHHHHHHHHHhhhccCCCcEEEEecc
Confidence 322 333334 5567799999987
No 93
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.11 E-value=3.2e-10 Score=100.33 Aligned_cols=106 Identities=12% Similarity=0.121 Sum_probs=71.8
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHh-------CCCccC
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER-------MDVLDF 74 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~-------~~~~~l 74 (203)
+|||||+.+|+.|+.+++.+++.. +...+..+.|+.... . .....|+|+|...+.....+ ...+.-
T Consensus 301 tLILvps~~Lv~QW~~ef~~~~~l-~~~~I~~~tg~~k~~-----~-~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~ 373 (732)
T TIGR00603 301 CLVLCTSAVSVEQWKQQFKMWSTI-DDSQICRFTSDAKER-----F-HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTN 373 (732)
T ss_pred EEEEeCcHHHHHHHHHHHHHhcCC-CCceEEEEecCcccc-----c-ccCCcEEEEEHHHhhcccccchhhhHHHHHhcc
Confidence 699999999999999999998643 245666666653221 1 13468999999876432111 011223
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecCh
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~ 119 (203)
....++|+||+|.+-... .+.++..+ .....+++|||...
T Consensus 374 ~~~gLII~DEvH~lpA~~----fr~il~~l-~a~~RLGLTATP~R 413 (732)
T TIGR00603 374 REWGLILLDEVHVVPAAM----FRRVLTIV-QAHCKLGLTATLVR 413 (732)
T ss_pred ccCCEEEEEccccccHHH----HHHHHHhc-CcCcEEEEeecCcc
Confidence 467799999999985543 44455555 35568999999864
No 94
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.08 E-value=2.2e-10 Score=94.03 Aligned_cols=175 Identities=19% Similarity=0.157 Sum_probs=114.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH---Hh--CCCeEEEeccHHHHH-----HHHhCC
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EE--EGANLLIGTPGRLYD-----IMERMD 70 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l---~~--~~~~ilV~Tp~~l~~-----~~~~~~ 70 (203)
+.||++|.-+|.....+.+.+| ++++-.+.+-.+..+..+-+ .. ....++.-||+.-.. +++ +
T Consensus 63 ITIV~SPLiALIkDQiDHL~~L-----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn--~ 135 (641)
T KOG0352|consen 63 ITIVISPLIALIKDQIDHLKRL-----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLN--G 135 (641)
T ss_pred eEEEehHHHHHHHHHHHHHHhc-----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHH--H
Confidence 3689999777766554555554 78888888877766655533 22 346899999998532 222 2
Q ss_pred CccCCCccEEEEcchhHhhhhc--hHHHHHHHH--HhCCCCCcEEEEeeecChhHHH--HHHhcCCCCeEEEeccCcccc
Q 028826 71 VLDFRNLVILVLDEADRLLDMG--FQKQISYII--SRLPKLRRTGLFSATQTEAVEE--LSKAGLRNPVRIEVRAESKSH 144 (203)
Q Consensus 71 ~~~l~~v~~lViDEad~l~~~~--~~~~~~~il--~~~~~~~q~i~~SAT~~~~v~~--~~~~~l~~~~~i~~~~~~~~~ 144 (203)
..+-+-++++|+||||+...|| |++++-.+- +.--.....+.++||.+++|.+ +....+++|+-+..++.
T Consensus 136 L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~---- 211 (641)
T KOG0352|consen 136 LANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPT---- 211 (641)
T ss_pred HhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcc----
Confidence 3345678999999999999998 888876653 2223577899999999999988 44566778886655443
Q ss_pred cccchhhhhccCCCCCceeEEEEEcC----CCCcHHHHHHHHhcC-------------CCCeEEEEeccCCcccC
Q 028826 145 HASASSQQLASSKTPLGLHLEYLECE----SDKKPSQLVDLLIKN-------------KSKKIIMYVQHGNFSED 202 (203)
Q Consensus 145 ~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~k~~~l~~ll~~~-------------~~~~~lIF~ns~~~~e~ 202 (203)
-..| .|+... -++-+..|.++-... ..+=.||||.||..||+
T Consensus 212 -------------FR~N---LFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq 270 (641)
T KOG0352|consen 212 -------------FRDN---LFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQ 270 (641)
T ss_pred -------------hhhh---hhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHH
Confidence 1112 122211 134455555555321 12348999999999985
No 95
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.02 E-value=3.3e-09 Score=94.98 Aligned_cols=169 Identities=23% Similarity=0.275 Sum_probs=110.2
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEE-EEcCcchHHHH---HHHHhCCCeEEEeccHHHHHHHHhCCCccCCCc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSML-LVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~-~~~g~~~~~~~---~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v 77 (203)
++|++||+-|+.|+++.+++++....+.++.. .+|.....+.. ..+.++..||+|+|..-|...+.. +.-.++
T Consensus 128 ~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~---L~~~kF 204 (1187)
T COG1110 128 VYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE---LSKLKF 204 (1187)
T ss_pred EEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH---hcccCC
Confidence 68999999999999999999987653244444 55554444333 345567899999999999887765 222468
Q ss_pred cEEEEcchhHhhhh-----------chHHH-H------HHHHHhC------------------------CCCCcEEEEee
Q 028826 78 VILVLDEADRLLDM-----------GFQKQ-I------SYIISRL------------------------PKLRRTGLFSA 115 (203)
Q Consensus 78 ~~lViDEad~l~~~-----------~~~~~-~------~~il~~~------------------------~~~~q~i~~SA 115 (203)
+++++|++|.++.. ||.+. + ..+...+ .+..+.++.||
T Consensus 205 dfifVDDVDA~LkaskNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSA 284 (1187)
T COG1110 205 DFIFVDDVDAILKASKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSA 284 (1187)
T ss_pred CEEEEccHHHHHhccccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeec
Confidence 89999999998853 22221 1 1111111 12358999999
Q ss_pred ecChhHH-H-HHHhcCCCCeEEEeccCcccccccchhhhhccCCCCCceeEEEEEcCCCCcHHHHHHHHhcCCCCeEEEE
Q 028826 116 TQTEAVE-E-LSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPSQLVDLLIKNKSKKIIMY 193 (203)
Q Consensus 116 T~~~~v~-~-~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF 193 (203)
|..+.-. . +.+..+. +.++.. .....|+...|... +-...+..+++..+.+ .|||
T Consensus 285 Tg~~rg~R~~LfReLlg----FevG~~---------------~~~LRNIvD~y~~~---~~~e~~~elvk~lG~G-gLIf 341 (1187)
T COG1110 285 TGKPRGSRLKLFRELLG----FEVGSG---------------GEGLRNIVDIYVES---ESLEKVVELVKKLGDG-GLIF 341 (1187)
T ss_pred cCCCCCchHHHHHHHhC----CccCcc---------------chhhhheeeeeccC---ccHHHHHHHHHHhCCC-eEEE
Confidence 9866421 1 2222222 223333 45677888888665 5566667777766654 8999
Q ss_pred ecc
Q 028826 194 VQH 196 (203)
Q Consensus 194 ~ns 196 (203)
++.
T Consensus 342 V~~ 344 (1187)
T COG1110 342 VPI 344 (1187)
T ss_pred EEc
Confidence 998
No 96
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=98.97 E-value=5.1e-08 Score=84.59 Aligned_cols=112 Identities=21% Similarity=0.398 Sum_probs=87.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHH---HHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKAD---VKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~---~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v 77 (203)
||..++||--||.|=+..+.++.+.+ ++++..++|....... ...+.++..|++|||-.-+- ....++++
T Consensus 313 Q~ALMAPTEILA~QH~~~~~~~l~~~-~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ------d~V~F~~L 385 (677)
T COG1200 313 QAALMAPTEILAEQHYESLRKWLEPL-GIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ------DKVEFHNL 385 (677)
T ss_pred eeEEeccHHHHHHHHHHHHHHHhhhc-CCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh------cceeecce
Confidence 57889999999999999999999988 8999999997664443 33555677999999986554 57789999
Q ss_pred cEEEEcchhHhhhhchHHHHHHHHHhCCC-CCcEEEEeeecChhHHHH
Q 028826 78 VILVLDEADRLLDMGFQKQISYIISRLPK-LRRTGLFSATQTEAVEEL 124 (203)
Q Consensus 78 ~~lViDEad~l~~~~~~~~~~~il~~~~~-~~q~i~~SAT~~~~v~~~ 124 (203)
.++|+||-|++ | -.=+..+..-.. .+..+++|||.-|....+
T Consensus 386 gLVIiDEQHRF---G--V~QR~~L~~KG~~~Ph~LvMTATPIPRTLAl 428 (677)
T COG1200 386 GLVIIDEQHRF---G--VHQRLALREKGEQNPHVLVMTATPIPRTLAL 428 (677)
T ss_pred eEEEEeccccc---c--HHHHHHHHHhCCCCCcEEEEeCCCchHHHHH
Confidence 99999999986 2 222333444445 688999999987754444
No 97
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=98.96 E-value=2.6e-09 Score=90.75 Aligned_cols=102 Identities=19% Similarity=0.231 Sum_probs=66.4
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCC-CeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEG-ANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~-~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
+||||||++|+.|+.+.+.+.... +-.+. ..||.... .. ..|.|+|-..+...-.. .........++
T Consensus 83 ~Lvlv~~~~L~~Qw~~~~~~~~~~--~~~~g-~~~~~~~~--------~~~~~i~vat~qtl~~~~~l-~~~~~~~~~li 150 (442)
T COG1061 83 TLVLVPTKELLDQWAEALKKFLLL--NDEIG-IYGGGEKE--------LEPAKVTVATVQTLARRQLL-DEFLGNEFGLI 150 (442)
T ss_pred EEEEECcHHHHHHHHHHHHHhcCC--ccccc-eecCceec--------cCCCcEEEEEhHHHhhhhhh-hhhcccccCEE
Confidence 699999999999998766665422 11233 34443321 12 46999999988764211 22334478899
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecCh
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~ 119 (203)
|+||+|++.+..+......+....+ .+++|||.+.
T Consensus 151 I~DE~Hh~~a~~~~~~~~~~~~~~~----~LGLTATp~R 185 (442)
T COG1061 151 IFDEVHHLPAPSYRRILELLSAAYP----RLGLTATPER 185 (442)
T ss_pred EEEccccCCcHHHHHHHHhhhcccc----eeeeccCcee
Confidence 9999999977665554443333222 8999999763
No 98
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=98.95 E-value=2.1e-09 Score=96.14 Aligned_cols=83 Identities=19% Similarity=0.301 Sum_probs=71.2
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHH-HHHHHhCC-CccC-----
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMD-VLDF----- 74 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l-~~~~~~~~-~~~l----- 74 (203)
+.||+||++||.|..+++..+...+ |+++.++.+|.+..+.. ..-.+||++|||+++ .++++. + .++.
T Consensus 126 VhIvT~ndyLA~RD~e~m~~l~~~l-Glsv~~i~~~~~~~~r~---~~Y~~dI~YgT~~e~gfDyLrd-nm~~~~~~~vq 200 (908)
T PRK13107 126 VHVITVNDYLARRDAENNRPLFEFL-GLTVGINVAGLGQQEKK---AAYNADITYGTNNEFGFDYLRD-NMAFSPQERVQ 200 (908)
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHhc-CCeEEEecCCCCHHHHH---hcCCCCeEEeCCCcccchhhhc-cCccchhhhhc
Confidence 6899999999999999999999998 99999999988764332 234799999999999 899987 4 4444
Q ss_pred CCccEEEEcchhHhh
Q 028826 75 RNLVILVLDEADRLL 89 (203)
Q Consensus 75 ~~v~~lViDEad~l~ 89 (203)
..+.+.||||||.++
T Consensus 201 r~~~~aIvDEvDsiL 215 (908)
T PRK13107 201 RPLHYALIDEVDSIL 215 (908)
T ss_pred cccceeeecchhhhc
Confidence 789999999999987
No 99
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=98.85 E-value=1.5e-08 Score=89.00 Aligned_cols=120 Identities=14% Similarity=0.202 Sum_probs=87.8
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCcc-CCCccEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLD-FRNLVIL 80 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~-l~~v~~l 80 (203)
+|+++||+-|+.|....+..++. +..+....||.........+ -..++|+|.||.-+...+.. +..+ ++++.++
T Consensus 109 iVF~aP~~pLv~QQ~a~~~~~~~---~~~~T~~l~~~~~~~~r~~i-~~s~~vff~TpQil~ndL~~-~~~~~ls~fs~i 183 (746)
T KOG0354|consen 109 VVFLAPTRPLVNQQIACFSIYLI---PYSVTGQLGDTVPRSNRGEI-VASKRVFFRTPQILENDLKS-GLHDELSDFSLI 183 (746)
T ss_pred EEEeeCCchHHHHHHHHHhhccC---cccceeeccCccCCCchhhh-hcccceEEeChHhhhhhccc-ccccccceEEEE
Confidence 68999999999888766666543 35666677774433333333 34689999999999988887 4444 6999999
Q ss_pred EEcchhHhhhhc-hHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHH
Q 028826 81 VLDEADRLLDMG-FQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (203)
Q Consensus 81 ViDEad~l~~~~-~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~ 126 (203)
||||||+-.... |..-++.++..-....|++++|||..+......+
T Consensus 184 v~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qILgLTASpG~~~~~v~~ 230 (746)
T KOG0354|consen 184 VFDECHRTSKNHPYNNIMREYLDLKNQGNQILGLTASPGSKLEQVQN 230 (746)
T ss_pred EEcccccccccccHHHHHHHHHHhhhccccEEEEecCCCccHHHHHH
Confidence 999999987654 5555556666665666999999999876555433
No 100
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=98.76 E-value=2e-07 Score=85.25 Aligned_cols=128 Identities=22% Similarity=0.289 Sum_probs=103.3
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHH---HHHhCCCeEEEeccHHHHHHHHhCCCccCCCc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~---~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v 77 (203)
|+.|||||--||.|=++.+++=.+++ ++++..+..=.+.+++.. .+.++..||||||-.-|. +.+.++++
T Consensus 645 QVAvLVPTTlLA~QHy~tFkeRF~~f-PV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~------kdv~FkdL 717 (1139)
T COG1197 645 QVAVLVPTTLLAQQHYETFKERFAGF-PVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLS------KDVKFKDL 717 (1139)
T ss_pred eEEEEcccHHhHHHHHHHHHHHhcCC-CeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhC------CCcEEecC
Confidence 57899999999999999998877888 699888776666555544 455688999999974443 67889999
Q ss_pred cEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccC
Q 028826 78 VILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAE 140 (203)
Q Consensus 78 ~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~ 140 (203)
.++||||=|++ .....+. +..+..+.-++-+|||.-|...++.-..+++-..|...+.
T Consensus 718 GLlIIDEEqRF-GVk~KEk----LK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~ 775 (1139)
T COG1197 718 GLLIIDEEQRF-GVKHKEK----LKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPE 775 (1139)
T ss_pred CeEEEechhhc-CccHHHH----HHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCC
Confidence 99999999986 3335555 4445577889999999999999999999999888877766
No 101
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=98.62 E-value=2.9e-07 Score=68.46 Aligned_cols=110 Identities=17% Similarity=0.120 Sum_probs=69.4
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEE-----------EEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCC
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSML-----------LVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMD 70 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~-----------~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~ 70 (203)
+++++|+..|+.|..+.+..+.... ..... ...................++++.|...+........
T Consensus 53 ~l~~~p~~~l~~Q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~ 130 (184)
T PF04851_consen 53 VLIVAPNISLLEQWYDEFDDFGSEK--YNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEK 130 (184)
T ss_dssp EEEEESSHHHHHHHHHHHHHHSTTS--EEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH--
T ss_pred eeEecCHHHHHHHHHHHHHHhhhhh--hhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhccccc
Confidence 6899999999999999997775542 11111 0111111111222235678999999999998776411
Q ss_pred ----------CccCCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecC
Q 028826 71 ----------VLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (203)
Q Consensus 71 ----------~~~l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~ 118 (203)
........++|+||||.+....- .+.++. .+...++++|||.+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~vI~DEaH~~~~~~~---~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 131 KIDESARRSYKLLKNKFDLVIIDEAHHYPSDSS---YREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp -------GCHHGGGGSESEEEEETGGCTHHHHH---HHHHHH--SSCCEEEEEESS-S
T ss_pred ccccchhhhhhhccccCCEEEEehhhhcCCHHH---HHHHHc--CCCCeEEEEEeCcc
Confidence 12245678999999999865431 334444 56778999999975
No 102
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=98.48 E-value=3.1e-07 Score=82.05 Aligned_cols=88 Identities=14% Similarity=0.129 Sum_probs=64.2
Q ss_pred CceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhC-CCccCCCccEEEEcchhHhhhhchHHHHHHHHHhC--
Q 028826 28 DVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM-DVLDFRNLVILVLDEADRLLDMGFQKQISYIISRL-- 104 (203)
Q Consensus 28 ~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~-~~~~l~~v~~lViDEad~l~~~~~~~~~~~il~~~-- 104 (203)
|+++-...|+....... +.-++-|+|-|+-..+++.. ..-++..+.++|+||.|.+.+.+....++.++..+
T Consensus 297 G~~ve~y~g~~~p~~~~-----k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y 371 (1008)
T KOG0950|consen 297 GFPVEEYAGRFPPEKRR-----KRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILY 371 (1008)
T ss_pred CCcchhhcccCCCCCcc-----cceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHH
Confidence 66666666554443332 34589999999977666541 23357789999999999999988888888777665
Q ss_pred ---CCCCcEEEEeeecChh
Q 028826 105 ---PKLRRTGLFSATQTEA 120 (203)
Q Consensus 105 ---~~~~q~i~~SAT~~~~ 120 (203)
....|+|+.|||+|+.
T Consensus 372 ~~~~~~~~iIGMSATi~N~ 390 (1008)
T KOG0950|consen 372 ENLETSVQIIGMSATIPNN 390 (1008)
T ss_pred hccccceeEeeeecccCCh
Confidence 2345799999999973
No 103
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.47 E-value=3e-06 Score=75.43 Aligned_cols=168 Identities=15% Similarity=0.274 Sum_probs=108.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHH---HHHhCCCeEEEeccHHHHHHHHhCCCccCCCc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~---~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v 77 (203)
++|||+|--.|..|+...++... +.++..+++|.+..+... .+..+...|+|||=..+. ..++++
T Consensus 247 qvLvLVPEI~Ltpq~~~rf~~rF----g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF--------~Pf~~L 314 (730)
T COG1198 247 QVLVLVPEIALTPQLLARFKARF----GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF--------LPFKNL 314 (730)
T ss_pred EEEEEeccccchHHHHHHHHHHh----CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc--------Cchhhc
Confidence 58999999999999988888765 578889999977554443 344588999999975543 346789
Q ss_pred cEEEEcchhHh-hh--hc---hHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhh
Q 028826 78 VILVLDEADRL-LD--MG---FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQ 151 (203)
Q Consensus 78 ~~lViDEad~l-~~--~~---~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~ 151 (203)
.++||||=|-- +. .+ +..++.-..++. .++++|+-|||-+-+ .+.+..-..+..+.+...
T Consensus 315 GLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~-~~~pvvLgSATPSLE--S~~~~~~g~y~~~~L~~R----------- 380 (730)
T COG1198 315 GLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKK-ENAPVVLGSATPSLE--SYANAESGKYKLLRLTNR----------- 380 (730)
T ss_pred cEEEEeccccccccCCcCCCcCHHHHHHHHHHH-hCCCEEEecCCCCHH--HHHhhhcCceEEEEcccc-----------
Confidence 99999996643 21 12 344444444444 688999999997744 333333333455555544
Q ss_pred hhccCCCCCceeEEEEEcCCC-CcH-----HHHHHHHhc--CCCCeEEEEeccCC
Q 028826 152 QLASSKTPLGLHLEYLECESD-KKP-----SQLVDLLIK--NKSKKIIMYVQHGN 198 (203)
Q Consensus 152 ~~~~~~~~~~i~~~~~~~~~~-~k~-----~~l~~ll~~--~~~~~~lIF~ns~~ 198 (203)
..........++.+..+ .+. ..|++.+++ ..++++|+|.|.|=
T Consensus 381 ----~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRG 431 (730)
T COG1198 381 ----AGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRG 431 (730)
T ss_pred ----ccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 22222223344444332 222 456666643 46779999999874
No 104
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=98.45 E-value=3.1e-06 Score=68.29 Aligned_cols=163 Identities=19% Similarity=0.190 Sum_probs=99.0
Q ss_pred EEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEEE
Q 028826 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVL 82 (203)
Q Consensus 3 lil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lVi 82 (203)
.|.+|--+-+..++..++.- +++..+.+++|+++.. .+..++|+|.-.|+.+-.. +++++|
T Consensus 148 ciASPRvDVclEl~~Rlk~a---F~~~~I~~Lyg~S~~~--------fr~plvVaTtHQLlrFk~a--------FD~liI 208 (441)
T COG4098 148 CIASPRVDVCLELYPRLKQA---FSNCDIDLLYGDSDSY--------FRAPLVVATTHQLLRFKQA--------FDLLII 208 (441)
T ss_pred EEecCcccchHHHHHHHHHh---hccCCeeeEecCCchh--------ccccEEEEehHHHHHHHhh--------ccEEEE
Confidence 45677777777776666654 3357888899987643 2367999999888877654 679999
Q ss_pred cchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCCCce
Q 028826 83 DEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGL 162 (203)
Q Consensus 83 DEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 162 (203)
||+|.+-=..-...-..+-.......-+|++|||-++..+.-+...- -..+.+...- |..|-.
T Consensus 209 DEVDAFP~~~d~~L~~Av~~ark~~g~~IylTATp~k~l~r~~~~g~--~~~~klp~Rf--------------H~~pLp- 271 (441)
T COG4098 209 DEVDAFPFSDDQSLQYAVKKARKKEGATIYLTATPTKKLERKILKGN--LRILKLPARF--------------HGKPLP- 271 (441)
T ss_pred eccccccccCCHHHHHHHHHhhcccCceEEEecCChHHHHHHhhhCC--eeEeecchhh--------------cCCCCC-
Confidence 99998731111111122333344567889999999977665444332 2333343331 222222
Q ss_pred eEEEEEcCC-C-----CcH-HHHHHHHhcC--CCCeEEEEeccCCccc
Q 028826 163 HLEYLECES-D-----KKP-SQLVDLLIKN--KSKKIIMYVQHGNFSE 201 (203)
Q Consensus 163 ~~~~~~~~~-~-----~k~-~~l~~ll~~~--~~~~~lIF~ns~~~~e 201 (203)
.=.|.++.. . .|+ ..|...|+.. .+.|++||+++-+..|
T Consensus 272 vPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~e 319 (441)
T COG4098 272 VPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETME 319 (441)
T ss_pred CCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHH
Confidence 223333332 2 223 3677777644 4579999999876554
No 105
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=98.42 E-value=4.7e-07 Score=81.21 Aligned_cols=114 Identities=14% Similarity=0.113 Sum_probs=79.0
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhC--CCccCCCccE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM--DVLDFRNLVI 79 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~--~~~~l~~v~~ 79 (203)
+|+++||++|++|+...+..-.....-.+...+.|....+.+... -+|+|+|+-|+.+-.++... ..-...++++
T Consensus 559 VIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~sl~g~ltqEYsinp---~nCQVLITvPecleslLlspp~~q~~cerIRy 635 (1330)
T KOG0949|consen 559 VIYVAPTKALVNQVSANVYARFDTKTFLRGVSLLGDLTQEYSINP---WNCQVLITVPECLESLLLSPPHHQKFCERIRY 635 (1330)
T ss_pred EEEecchHHHhhhhhHHHHHhhccCccccchhhHhhhhHHhcCCc---hhceEEEEchHHHHHHhcCchhhhhhhhcceE
Confidence 589999999999997766554422212455556666655555432 26999999999998887651 2345789999
Q ss_pred EEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChh
Q 028826 80 LVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120 (203)
Q Consensus 80 lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~ 120 (203)
+|+||+|++-...-.-....++-.. .+.++++|||+.+.
T Consensus 636 iIfDEVH~iG~~ed~l~~Eqll~li--~CP~L~LSATigN~ 674 (1330)
T KOG0949|consen 636 IIFDEVHLIGNEEDGLLWEQLLLLI--PCPFLVLSATIGNP 674 (1330)
T ss_pred EEechhhhccccccchHHHHHHHhc--CCCeeEEecccCCH
Confidence 9999999985433222334444444 48899999999764
No 106
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=98.41 E-value=1.4e-06 Score=77.98 Aligned_cols=85 Identities=15% Similarity=0.123 Sum_probs=66.7
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHH-HHHHhC-----CCccC
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLY-DIMERM-----DVLDF 74 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~-~~~~~~-----~~~~l 74 (203)
++-|++||--||.|=++.+.++...+ |++++++.|+.+..+.... -.+||+.||...+. ++++.. ...-.
T Consensus 123 ~v~vvT~neyLA~Rd~e~~~~~~~~L-Gl~vg~i~~~~~~~~r~~~---y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~ 198 (796)
T PRK12906 123 GVHVVTVNEYLSSRDATEMGELYRWL-GLTVGLNLNSMSPDEKRAA---YNCDITYSTNSELGFDYLRDNMVVYKEQMVQ 198 (796)
T ss_pred CeEEEeccHHHHHhhHHHHHHHHHhc-CCeEEEeCCCCCHHHHHHH---hcCCCeecCCccccccchhhccccchhhhhc
Confidence 36789999999999999999999999 9999999888776655433 36899999998875 566541 11113
Q ss_pred CCccEEEEcchhHhh
Q 028826 75 RNLVILVLDEADRLL 89 (203)
Q Consensus 75 ~~v~~lViDEad~l~ 89 (203)
....+.||||+|.++
T Consensus 199 r~~~~aIvDEvDSiL 213 (796)
T PRK12906 199 RPLNYAIVDEVDSIL 213 (796)
T ss_pred cCcceeeeccchhee
Confidence 568899999999975
No 107
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=98.40 E-value=6.6e-07 Score=70.10 Aligned_cols=81 Identities=26% Similarity=0.452 Sum_probs=65.9
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEc-CcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVG-GVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~-g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
.|||+++---|..+.+.++.+... +.+++-+++ ....+++...+.....+|.||||+|+..++.. +.+.+++++++
T Consensus 129 ~lvvs~SalRa~dl~R~l~~~~~k--~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~-~~L~l~~l~~i 205 (252)
T PF14617_consen 129 VLVVSSSALRAADLIRALRSFKGK--DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLEN-GALSLSNLKRI 205 (252)
T ss_pred EEEEcchHHHHHHHHHHHHhhccC--CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHc-CCCCcccCeEE
Confidence 588888887788888888887422 345544444 35778899999778999999999999999988 99999999999
Q ss_pred EEcch
Q 028826 81 VLDEA 85 (203)
Q Consensus 81 ViDEa 85 (203)
|+|--
T Consensus 206 vlD~s 210 (252)
T PF14617_consen 206 VLDWS 210 (252)
T ss_pred EEcCC
Confidence 99973
No 108
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.29 E-value=4.1e-05 Score=68.19 Aligned_cols=114 Identities=10% Similarity=0.177 Sum_probs=80.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHH---HHHhCCCeEEEeccHHHHHHHHhCCCccCCCc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~---~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v 77 (203)
++|||+|...|+.|+...+++..+ +-.+..++++.+..+..+ .+..+...|+|||-..+. ..+.++
T Consensus 190 ~vLvLvPEi~lt~q~~~rl~~~f~---~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvF--------aP~~~L 258 (665)
T PRK14873 190 GALVVVPDQRDVDRLEAALRALLG---AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVF--------APVEDL 258 (665)
T ss_pred eEEEEecchhhHHHHHHHHHHHcC---CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEE--------eccCCC
Confidence 589999999999999998887642 256888999887665444 344567899999975542 357789
Q ss_pred cEEEEcchh-Hhhhhc-----hHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHH
Q 028826 78 VILVLDEAD-RLLDMG-----FQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (203)
Q Consensus 78 ~~lViDEad-~l~~~~-----~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~ 126 (203)
.++|+||=| ..+... ...++....... .+..+++-|||-+-+....+.
T Consensus 259 gLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~-~~~~lvLgSaTPSles~~~~~ 312 (665)
T PRK14873 259 GLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQ-HGCALLIGGHARTAEAQALVE 312 (665)
T ss_pred CEEEEEcCCchhhcCCCCCCccHHHHHHHHHHH-cCCcEEEECCCCCHHHHHHHh
Confidence 999999954 333222 223344444443 578899999998866655444
No 109
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=98.28 E-value=1.1e-05 Score=74.25 Aligned_cols=111 Identities=19% Similarity=0.131 Sum_probs=61.3
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHH--HHHhCCCeEEEeccHHHHHHHHhCCCccCCCccE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK--KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVI 79 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~--~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~ 79 (203)
+|||||+ .|..|+..++.+.. ++....+.++........ .- -...+++|+|-+.+...-.....+.-...++
T Consensus 202 vLIVvP~-sL~~QW~~El~~kF----~l~~~i~~~~~~~~~~~~~~~p-f~~~~~vI~S~~~l~~~~~~~~~l~~~~wdl 275 (956)
T PRK04914 202 VLILVPE-TLQHQWLVEMLRRF----NLRFSLFDEERYAEAQHDADNP-FETEQLVICSLDFLRRNKQRLEQALAAEWDL 275 (956)
T ss_pred EEEEcCH-HHHHHHHHHHHHHh----CCCeEEEcCcchhhhcccccCc-cccCcEEEEEHHHhhhCHHHHHHHhhcCCCE
Confidence 6999998 69999999986532 444444433321110000 00 0235799999887764111001122235779
Q ss_pred EEEcchhHhhhh-chHHHHHHHHHhCC-CCCcEEEEeeecC
Q 028826 80 LVLDEADRLLDM-GFQKQISYIISRLP-KLRRTGLFSATQT 118 (203)
Q Consensus 80 lViDEad~l~~~-~~~~~~~~il~~~~-~~~q~i~~SAT~~ 118 (203)
+|+||||++-.. +........+..+. +...++++|||..
T Consensus 276 vIvDEAH~lk~~~~~~s~~y~~v~~La~~~~~~LLLTATP~ 316 (956)
T PRK04914 276 LVVDEAHHLVWSEEAPSREYQVVEQLAEVIPGVLLLTATPE 316 (956)
T ss_pred EEEechhhhccCCCCcCHHHHHHHHHhhccCCEEEEEcCcc
Confidence 999999998411 11111123333332 3467899999964
No 110
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.21 E-value=1.1e-05 Score=72.27 Aligned_cols=106 Identities=17% Similarity=0.164 Sum_probs=66.4
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhC-CCccCCCc-cE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM-DVLDFRNL-VI 79 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~-~~~~l~~v-~~ 79 (203)
+|||+|..+|..|+.+.+.++.... . .+..+...-...+.+....|+|+|..++...+... ......+- -+
T Consensus 296 vl~lvdR~~L~~Q~~~~f~~~~~~~--~-----~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~l 368 (667)
T TIGR00348 296 VFFVVDRRELDYQLMKEFQSLQKDC--A-----ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVV 368 (667)
T ss_pred EEEEECcHHHHHHHHHHHHhhCCCC--C-----cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEE
Confidence 5899999999999999999985321 1 11112222223343445789999999998654330 11111111 28
Q ss_pred EEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecC
Q 028826 80 LVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (203)
Q Consensus 80 lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~ 118 (203)
+|+||||+....++...+ ...+ ++...++||||.-
T Consensus 369 vIvDEaHrs~~~~~~~~l---~~~~-p~a~~lGfTaTP~ 403 (667)
T TIGR00348 369 VIFDEAHRSQYGELAKNL---KKAL-KNASFFGFTGTPI 403 (667)
T ss_pred EEEEcCccccchHHHHHH---HhhC-CCCcEEEEeCCCc
Confidence 999999986433333322 2344 4678999999974
No 111
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.20 E-value=4.2e-06 Score=67.16 Aligned_cols=107 Identities=21% Similarity=0.184 Sum_probs=67.8
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHH-----HHHHhCCCccCCC
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLY-----DIMERMDVLDFRN 76 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~-----~~~~~~~~~~l~~ 76 (203)
+|||+|+ .+..|+..++.++.... ++++..+.|+.......... ....+++|+|.+.+. .... .+.--+
T Consensus 61 ~LIv~P~-~l~~~W~~E~~~~~~~~-~~~v~~~~~~~~~~~~~~~~-~~~~~vvi~ty~~~~~~~~~~~~~---~l~~~~ 134 (299)
T PF00176_consen 61 TLIVVPS-SLLSQWKEEIEKWFDPD-SLRVIIYDGDSERRRLSKNQ-LPKYDVVITTYETLRKARKKKDKE---DLKQIK 134 (299)
T ss_dssp EEEEE-T-TTHHHHHHHHHHHSGT--TS-EEEESSSCHHHHTTSSS-CCCSSEEEEEHHHHH--TSTHTTH---HHHTSE
T ss_pred eeEeecc-chhhhhhhhhccccccc-cccccccccccccccccccc-cccceeeecccccccccccccccc---cccccc
Confidence 6999999 78899999999998543 57777766665122221111 256899999999998 1111 111234
Q ss_pred ccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeec
Q 028826 77 LVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117 (203)
Q Consensus 77 v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~ 117 (203)
.+.+|+||+|.+= +........+..+. ....+++|||.
T Consensus 135 ~~~vIvDEaH~~k--~~~s~~~~~l~~l~-~~~~~lLSgTP 172 (299)
T PF00176_consen 135 WDRVIVDEAHRLK--NKDSKRYKALRKLR-ARYRWLLSGTP 172 (299)
T ss_dssp EEEEEETTGGGGT--TTTSHHHHHHHCCC-ECEEEEE-SS-
T ss_pred ceeEEEecccccc--cccccccccccccc-cceEEeecccc
Confidence 8899999999982 22333344444464 67788899994
No 112
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=98.16 E-value=7.1e-06 Score=76.79 Aligned_cols=113 Identities=12% Similarity=0.045 Sum_probs=73.7
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhC----CCccCCCc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM----DVLDFRNL 77 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~----~~~~l~~v 77 (203)
+|+|+|+++|+.|+.+.+..+.... ......+++..... .........|+|+|...+...+... ....+.+.
T Consensus 466 VLfLvDR~~L~~Qa~~~F~~~~~~~-~~~~~~i~~i~~L~---~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~f 541 (1123)
T PRK11448 466 ILFLVDRSALGEQAEDAFKDTKIEG-DQTFASIYDIKGLE---DKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQY 541 (1123)
T ss_pred EEEEecHHHHHHHHHHHHHhccccc-ccchhhhhchhhhh---hhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcc
Confidence 6899999999999999998874321 11221222211111 1111345789999999987764320 12457788
Q ss_pred cEEEEcchhHhhhh---------------chHHHHHHHHHhCCCCCcEEEEeeecChh
Q 028826 78 VILVLDEADRLLDM---------------GFQKQISYIISRLPKLRRTGLFSATQTEA 120 (203)
Q Consensus 78 ~~lViDEad~l~~~---------------~~~~~~~~il~~~~~~~q~i~~SAT~~~~ 120 (203)
+++|+||||+-... .+...++.++.++ +.-.++||||....
T Consensus 542 dlIIiDEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yF--dA~~IGLTATP~r~ 597 (1123)
T PRK11448 542 DCIIVDEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYF--DAVKIGLTATPALH 597 (1123)
T ss_pred cEEEEECCCCCCccccccccchhccchhhhHHHHHHHHHhhc--CccEEEEecCCccc
Confidence 99999999995310 1245677888876 35779999998643
No 113
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.13 E-value=1.7e-05 Score=56.72 Aligned_cols=104 Identities=10% Similarity=0.114 Sum_probs=60.7
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
.|||.|||.++..+++.++.. +++...-..+ . . ..++.-|=|.|-+-+.+++.+ .....+.+++|
T Consensus 36 vLvL~PTRvva~em~~aL~~~-----~~~~~t~~~~---~----~-~~g~~~i~vMc~at~~~~~~~--p~~~~~yd~II 100 (148)
T PF07652_consen 36 VLVLAPTRVVAEEMYEALKGL-----PVRFHTNARM---R----T-HFGSSIIDVMCHATYGHFLLN--PCRLKNYDVII 100 (148)
T ss_dssp EEEEESSHHHHHHHHHHTTTS-----SEEEESTTSS------------SSSSEEEEEHHHHHHHHHT--SSCTTS-SEEE
T ss_pred EEEecccHHHHHHHHHHHhcC-----CcccCceeee---c----c-ccCCCcccccccHHHHHHhcC--cccccCccEEE
Confidence 699999999999887777654 2333211111 0 0 124456777888887777654 45578999999
Q ss_pred EcchhHhhhhc--hHHHHHHHHHhCCCCCcEEEEeeecChhHH
Q 028826 82 LDEADRLLDMG--FQKQISYIISRLPKLRRTGLFSATQTEAVE 122 (203)
Q Consensus 82 iDEad~l~~~~--~~~~~~~il~~~~~~~q~i~~SAT~~~~v~ 122 (203)
+||+|..-... ++..+..... . ....+|+.|||-|....
T Consensus 101 ~DEcH~~Dp~sIA~rg~l~~~~~-~-g~~~~i~mTATPPG~~~ 141 (148)
T PF07652_consen 101 MDECHFTDPTSIAARGYLRELAE-S-GEAKVIFMTATPPGSED 141 (148)
T ss_dssp ECTTT--SHHHHHHHHHHHHHHH-T-TS-EEEEEESS-TT---
T ss_pred EeccccCCHHHHhhheeHHHhhh-c-cCeeEEEEeCCCCCCCC
Confidence 99999863222 3333333322 2 34679999999987543
No 114
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.09 E-value=1.2e-05 Score=72.55 Aligned_cols=136 Identities=15% Similarity=0.118 Sum_probs=79.6
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHH-------------HHhCCCeEEEeccHHHHHHHHh
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKK-------------IEEEGANLLIGTPGRLYDIMER 68 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~-------------l~~~~~~ilV~Tp~~l~~~~~~ 68 (203)
.+++.|++.++.++++.++...... ++.....+|.......... ....-..+.++||..+......
T Consensus 249 ~i~vlP~~t~ie~~~~r~~~~~~~~-~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~ 327 (733)
T COG1203 249 VIYVLPFRTIIEDMYRRAKEIFGLF-SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVK 327 (733)
T ss_pred EEEEccHHHHHHHHHHHHHhhhccc-ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhcc
Confidence 5789999999999999999987654 3332213333322211110 0001234555555555442211
Q ss_pred CCCcc---CCCccEEEEcchhHhhhhchHHHHHHHHHhCC-CCCcEEEEeeecChhHHHHHHhcCCCCeEEEec
Q 028826 69 MDVLD---FRNLVILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSATQTEAVEELSKAGLRNPVRIEVR 138 (203)
Q Consensus 69 ~~~~~---l~~v~~lViDEad~l~~~~~~~~~~~il~~~~-~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~ 138 (203)
..... .-.-+.+|+||+|.+-+......+..++..+. ....+++.|||+|+...+.+...+.....+...
T Consensus 328 ~~~~~~~~~l~~S~vIlDE~h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~ 401 (733)
T COG1203 328 GFKFEFLALLLTSLVILDEVHLYADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVEN 401 (733)
T ss_pred ccchHHHHHHHhhchhhccHHhhcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceecc
Confidence 01111 12356899999998866533333333333332 367899999999999999888877765554443
No 115
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.07 E-value=8.6e-05 Score=68.74 Aligned_cols=169 Identities=15% Similarity=0.271 Sum_probs=107.5
Q ss_pred EEEEcCcHHHHHHHHHHH-HHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 2 GMIISPTRELSAQIYHVA-QPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~-~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
|++++|..+.+...++.+ +++... .|.+++.+.|..+..-... ...+|+|+||+++..+ . +.+.++++
T Consensus 1189 ~vyi~p~~~i~~~~~~~w~~~f~~~-~G~~~~~l~ge~s~~lkl~----~~~~vii~tpe~~d~l-q-----~iQ~v~l~ 1257 (1674)
T KOG0951|consen 1189 AVYIAPLEEIADEQYRDWEKKFSKL-LGLRIVKLTGETSLDLKLL----QKGQVIISTPEQWDLL-Q-----SIQQVDLF 1257 (1674)
T ss_pred EEEecchHHHHHHHHHHHHHhhccc-cCceEEecCCccccchHHh----hhcceEEechhHHHHH-h-----hhhhcceE
Confidence 789999999986655544 555555 4888888888777654432 3478999999997654 2 56789999
Q ss_pred EEcchhHhhhhc------hHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhc
Q 028826 81 VLDEADRLLDMG------FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLA 154 (203)
Q Consensus 81 ViDEad~l~~~~------~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~ 154 (203)
|.||+|.+-+.. ... ++.+.+.+.+...++.+|..+.+. ..+ .+......+....+
T Consensus 1258 i~d~lh~igg~~g~v~evi~S-~r~ia~q~~k~ir~v~ls~~lana-~d~--ig~s~~~v~Nf~p~-------------- 1319 (1674)
T KOG0951|consen 1258 IVDELHLIGGVYGAVYEVICS-MRYIASQLEKKIRVVALSSSLANA-RDL--IGASSSGVFNFSPS-------------- 1319 (1674)
T ss_pred eeehhhhhcccCCceEEEEee-HHHHHHHHHhheeEEEeehhhccc-hhh--ccccccceeecCcc--------------
Confidence 999999775321 122 667777777888899999888754 333 33344445555444
Q ss_pred cCCCCCceeEEEEEcCCCC---cHHH-----HHHHHh-cCCCCeEEEEeccCCccc
Q 028826 155 SSKTPLGLHLEYLECESDK---KPSQ-----LVDLLI-KNKSKKIIMYVQHGNFSE 201 (203)
Q Consensus 155 ~~~~~~~i~~~~~~~~~~~---k~~~-----l~~ll~-~~~~~~~lIF~ns~~~~e 201 (203)
..+..+......++... .... +..+.+ ....++++||+.+++.|.
T Consensus 1320 --~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~ 1373 (1674)
T KOG0951|consen 1320 --VRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHAR 1373 (1674)
T ss_pred --cCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhh
Confidence 23333333333333322 1111 111112 236679999999998764
No 116
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=1.1e-05 Score=68.47 Aligned_cols=130 Identities=22% Similarity=0.239 Sum_probs=86.8
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEE--------EEEcC--------cchHHHHH--------------------
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSM--------LLVGG--------VEVKADVK-------------------- 45 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~--------~~~~g--------~~~~~~~~-------------------- 45 (203)
+|||||+||-|..+.+.+..+..+...-+.. .-++| .+..++.+
T Consensus 296 VLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftkK 375 (698)
T KOG2340|consen 296 VLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTKK 375 (698)
T ss_pred EEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHHH
Confidence 6999999999999999988884322110110 11111 01111111
Q ss_pred --HHHh--CCCeEEEeccHHHHHHHHhC----CCc-cCCCccEEEEcchhHhhhhchHHHHHHHHHhCC---CC------
Q 028826 46 --KIEE--EGANLLIGTPGRLYDIMERM----DVL-DFRNLVILVLDEADRLLDMGFQKQISYIISRLP---KL------ 107 (203)
Q Consensus 46 --~l~~--~~~~ilV~Tp~~l~~~~~~~----~~~-~l~~v~~lViDEad~l~~~~~~~~~~~il~~~~---~~------ 107 (203)
.|.. ...||||++|--|.-.+.+. +.. .++++.++|||-||.++-.+ .+.+..++.++. ..
T Consensus 376 tikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QN-wEhl~~ifdHLn~~P~k~h~~Df 454 (698)
T KOG2340|consen 376 TIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQN-WEHLLHIFDHLNLQPSKQHDVDF 454 (698)
T ss_pred HHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhh-HHHHHHHHHHhhcCcccccCCCh
Confidence 1111 35899999999988777631 122 27899999999999998654 566667776663 21
Q ss_pred ---------------CcEEEEeeecChhHHHHHHhcCCCC
Q 028826 108 ---------------RRTGLFSATQTEAVEELSKAGLRNP 132 (203)
Q Consensus 108 ---------------~q~i~~SAT~~~~v~~~~~~~l~~~ 132 (203)
+|+++||+-..+....+...++.+.
T Consensus 455 SRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~ 494 (698)
T KOG2340|consen 455 SRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNM 494 (698)
T ss_pred hheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhh
Confidence 3999999999999888888877764
No 117
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=98.04 E-value=4.3e-05 Score=67.45 Aligned_cols=112 Identities=20% Similarity=0.233 Sum_probs=74.3
Q ss_pred EEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHH--HHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK--KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 3 lil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~--~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
||++|-.-|. .+++++....|+++++.++|+........ .+..++.||+|+|-+..+.=- ..+.--+=+++
T Consensus 221 LVi~P~StL~----NW~~Ef~rf~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk---~~lk~~~W~yl 293 (971)
T KOG0385|consen 221 LVIAPKSTLD----NWMNEFKRFTPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK---SFLKKFNWRYL 293 (971)
T ss_pred EEEeeHhhHH----HHHHHHHHhCCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH---HHHhcCCceEE
Confidence 7899977665 34444555567899999999875333222 223468999999999876421 22233456799
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHH
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEE 123 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~ 123 (203)
||||||++=. -...+..+++.+......++.+..+-+++.+
T Consensus 294 vIDEaHRiKN--~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~E 334 (971)
T KOG0385|consen 294 VIDEAHRIKN--EKSKLSKILREFKTDNRLLLTGTPLQNNLHE 334 (971)
T ss_pred Eechhhhhcc--hhhHHHHHHHHhcccceeEeeCCcccccHHH
Confidence 9999999832 3555668888887666666666666655444
No 118
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=97.96 E-value=3.1e-05 Score=70.07 Aligned_cols=83 Identities=17% Similarity=0.223 Sum_probs=67.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHH-HHHHHhCCCcc------
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMDVLD------ 73 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l-~~~~~~~~~~~------ 73 (203)
.+-|++||--||.|=+.++..+...+ |+++.++.++.+..+..... .+||++||..-+ -++++. .+.
T Consensus 125 ~VhvvT~ndyLA~RD~e~m~~l~~~l-Gl~v~~i~~~~~~~err~~Y---~~dI~YGT~~e~gFDYLrD--~~~~~~~~~ 198 (913)
T PRK13103 125 GVHVVTVNDYLARRDANWMRPLYEFL-GLSVGIVTPFQPPEEKRAAY---AADITYGTNNEFGFDYLRD--NMAFSLDDK 198 (913)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhccc-CCEEEEECCCCCHHHHHHHh---cCCEEEEcccccccchhhc--cceechhhh
Confidence 36789999999999999999999998 99999998887765554443 489999999887 345553 222
Q ss_pred -CCCccEEEEcchhHhh
Q 028826 74 -FRNLVILVLDEADRLL 89 (203)
Q Consensus 74 -l~~v~~lViDEad~l~ 89 (203)
...+.+.||||+|.++
T Consensus 199 vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 199 FQRELNFAVIDEVDSIL 215 (913)
T ss_pred cccccceeEechhhhee
Confidence 3789999999999976
No 119
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=97.94 E-value=0.00013 Score=67.62 Aligned_cols=107 Identities=14% Similarity=0.169 Sum_probs=70.3
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHH--HHHhCCCeEEEeccHHHHHHHHhCCCccCCCccE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK--KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVI 79 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~--~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~ 79 (203)
.|||||.. +..|+.+++.+++ |.+++..++|......... .+.....+|+|+|.+.+...... +.--+..+
T Consensus 222 ~LIVvP~S-lL~nW~~Ei~kw~---p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~---L~k~~W~~ 294 (1033)
T PLN03142 222 HMVVAPKS-TLGNWMNEIRRFC---PVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA---LKRFSWRY 294 (1033)
T ss_pred EEEEeChH-HHHHHHHHHHHHC---CCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH---hccCCCCE
Confidence 58999965 6678889988885 4577887777654322221 22235689999999988654322 22234679
Q ss_pred EEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecC
Q 028826 80 LVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (203)
Q Consensus 80 lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~ 118 (203)
+|+||||.+=. ....+...+..+. ....+++|+|.-
T Consensus 295 VIvDEAHrIKN--~~Sklskalr~L~-a~~RLLLTGTPl 330 (1033)
T PLN03142 295 IIIDEAHRIKN--ENSLLSKTMRLFS-TNYRLLITGTPL 330 (1033)
T ss_pred EEEcCccccCC--HHHHHHHHHHHhh-cCcEEEEecCCC
Confidence 99999999832 2344555666664 445577788853
No 120
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.90 E-value=9e-05 Score=66.07 Aligned_cols=101 Identities=17% Similarity=0.180 Sum_probs=67.8
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhC----CCccCCCc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM----DVLDFRNL 77 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~----~~~~l~~v 77 (203)
.|+|+-.+.|..|.+..+..+.++. ...-+..+... ...++|.++|-..+..-.... ..+.....
T Consensus 218 VLFLaDR~~Lv~QA~~af~~~~P~~---~~~n~i~~~~~--------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~F 286 (875)
T COG4096 218 VLFLADRNALVDQAYGAFEDFLPFG---TKMNKIEDKKG--------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFF 286 (875)
T ss_pred eeEEechHHHHHHHHHHHHHhCCCc---cceeeeecccC--------CcceeEEEeehHHHHhhhhccccccccCCCCce
Confidence 5899999999999999988886553 22222222221 124789999999998877651 24557779
Q ss_pred cEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecCh
Q 028826 78 VILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (203)
Q Consensus 78 ~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~ 119 (203)
+++||||||+= .....+.++.++....|.+ +||...
T Consensus 287 DlIvIDEaHRg----i~~~~~~I~dYFdA~~~gL--TATP~~ 322 (875)
T COG4096 287 DLIVIDEAHRG----IYSEWSSILDYFDAATQGL--TATPKE 322 (875)
T ss_pred eEEEechhhhh----HHhhhHHHHHHHHHHHHhh--ccCccc
Confidence 99999999984 3444446777774434333 666544
No 121
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=97.76 E-value=0.00031 Score=62.37 Aligned_cols=112 Identities=13% Similarity=0.213 Sum_probs=73.4
Q ss_pred EEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHh---CCCeEEEeccHHHH------HHHHhCCCcc
Q 028826 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEE---EGANLLIGTPGRLY------DIMERMDVLD 73 (203)
Q Consensus 3 lil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~---~~~~ilV~Tp~~l~------~~~~~~~~~~ 73 (203)
|||||+--|- .++++|.+.+|.+++-..+|.....++.+.... .+.|||++|-.... .++++
T Consensus 452 LVVvPsSTle----NWlrEf~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~----- 522 (941)
T KOG0389|consen 452 LVVVPSSTLE----NWLREFAKWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKN----- 522 (941)
T ss_pred EEEecchhHH----HHHHHHHHhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHh-----
Confidence 7999987654 567777777788999999998877666665433 36899999976553 23333
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHH
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~ 126 (203)
.++.++|+||.|.|=.. -.+.++++ ..++.+..+++.+..+-+++.+++.
T Consensus 523 -~~~n~viyDEgHmLKN~-~SeRy~~L-M~I~An~RlLLTGTPLQNNL~ELiS 572 (941)
T KOG0389|consen 523 -QKFNYVIYDEGHMLKNR-TSERYKHL-MSINANFRLLLTGTPLQNNLKELIS 572 (941)
T ss_pred -ccccEEEecchhhhhcc-chHHHHHh-ccccccceEEeeCCcccccHHHHHH
Confidence 56779999999976333 23333443 3344444444444445666666554
No 122
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=97.68 E-value=0.0038 Score=56.98 Aligned_cols=127 Identities=17% Similarity=0.211 Sum_probs=84.0
Q ss_pred CCCeEEEeccHHHHHHHHhCCCccCCCccEEEEcchhHh-hhhc-hHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHh
Q 028826 50 EGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRL-LDMG-FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (203)
Q Consensus 50 ~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lViDEad~l-~~~~-~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~ 127 (203)
..-.|-+.|.|.|+..+.. ...++.++++|+||||.= ++.+ ....+..++...+..-.+|+.|||+.. +.|..
T Consensus 138 ~~Trik~mTdGiLlrei~~--D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld~--~rfs~- 212 (845)
T COG1643 138 PRTRIKVMTDGILLREIQN--DPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLDA--ERFSA- 212 (845)
T ss_pred CCceeEEeccHHHHHHHhh--CcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecccCH--HHHHH-
Confidence 4578999999999999986 445899999999999962 3333 345566777777777899999999984 44444
Q ss_pred cCCCCeEEEeccCcccccccchhhhhccCCCCCceeEEEEEcCC-CC-cHHHHHHHHh---cCCCCeEEEEeccCCc
Q 028826 128 GLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECES-DK-KPSQLVDLLI---KNKSKKIIMYVQHGNF 199 (203)
Q Consensus 128 ~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~-k~~~l~~ll~---~~~~~~~lIF~ns~~~ 199 (203)
++.+.-.+.+... ...+..+|..-.. +. -.+.+...+. ....+.+|||.+-.+.
T Consensus 213 ~f~~apvi~i~GR------------------~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~E 271 (845)
T COG1643 213 YFGNAPVIEIEGR------------------TYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQRE 271 (845)
T ss_pred HcCCCCEEEecCC------------------ccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHH
Confidence 5555444444332 2455666644333 23 2334444443 4457789999876543
No 123
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.66 E-value=0.0001 Score=63.41 Aligned_cols=181 Identities=10% Similarity=-0.004 Sum_probs=110.2
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceE--EEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCC----ccCC
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKS--MLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV----LDFR 75 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~--~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~----~~l~ 75 (203)
.++..||+|+++.-.+-..-.....|..+. +-.+.| ..+..++.+...+.++|.+.|+.+...+-- +. ..+-
T Consensus 334 ~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~A~V~~~D~-~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~-~~~~~~~~~~ 411 (1034)
T KOG4150|consen 334 SLLPSEMVEHLRNGSKGQVVHVEVIKARKSAYVEMSDK-LSETTKSALKRIGLNTLYSHQAEAISAALA-KSLCYNVPVF 411 (1034)
T ss_pred eecchhHHHHhhccCCceEEEEEehhhhhcceeecccC-CCchhHHHHHhcCcceeecCHHHHHHHHhh-hccccccHHH
Confidence 356778888886443322222122222222 222333 334455666678999999999988654432 22 2355
Q ss_pred CccEEEEcchhHhhhh-c--hHHHHHHHHHhC-----CCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCccccccc
Q 028826 76 NLVILVLDEADRLLDM-G--FQKQISYIISRL-----PKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHAS 147 (203)
Q Consensus 76 ~v~~lViDEad~l~~~-~--~~~~~~~il~~~-----~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~ 147 (203)
...+.++||.|..... + -...++++++.+ +.+.|++-.|||+-+.++-+.+.+.-+.+.....++
T Consensus 412 ~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DG------- 484 (1034)
T KOG4150|consen 412 EELCKDTNSCALYLFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDG------- 484 (1034)
T ss_pred HHHHhcccceeeeecchhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecC-------
Confidence 7788999999976432 1 233344444444 357899999999999888877766555554444444
Q ss_pred chhhhhccCCCCCceeEEEEEcCC---------CCcHHHHHHHHhc--CCCCeEEEEeccCCccc
Q 028826 148 ASSQQLASSKTPLGLHLEYLECES---------DKKPSQLVDLLIK--NKSKKIIMYVQHGNFSE 201 (203)
Q Consensus 148 ~~~~~~~~~~~~~~i~~~~~~~~~---------~~k~~~l~~ll~~--~~~~~~lIF~ns~~~~e 201 (203)
.|.+-+|++++-++ ++++....+++-+ ..+-++|.||.+|+-||
T Consensus 485 ----------SPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CE 539 (1034)
T KOG4150|consen 485 ----------SPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCE 539 (1034)
T ss_pred ----------CCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHH
Confidence 56777888887653 1233333334332 24458999999999886
No 124
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.63 E-value=0.00066 Score=53.91 Aligned_cols=84 Identities=15% Similarity=0.260 Sum_probs=64.1
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHH-HHHHhC---CCcc--CC
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLY-DIMERM---DVLD--FR 75 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~-~~~~~~---~~~~--l~ 75 (203)
+=|++.+..||..=++++..+...+ |+.+..+.++.+.++..... .+||+.||...+. ++++.. +... ..
T Consensus 121 V~vvT~NdyLA~RD~~~~~~~y~~L-Glsv~~~~~~~~~~~r~~~Y---~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r 196 (266)
T PF07517_consen 121 VHVVTSNDYLAKRDAEEMRPFYEFL-GLSVGIITSDMSSEERREAY---AADIVYGTNSEFGFDYLRDNLALSKNEQVQR 196 (266)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHT-T--EEEEETTTEHHHHHHHH---HSSEEEEEHHHHHHHHHHHTT-SSGGG--SS
T ss_pred cEEEeccHHHhhccHHHHHHHHHHh-hhccccCccccCHHHHHHHH---hCcccccccchhhHHHHHHHHhhccchhccC
Confidence 3478899999999999999999999 99999999998865444333 4789999999986 566541 1111 46
Q ss_pred CccEEEEcchhHhh
Q 028826 76 NLVILVLDEADRLL 89 (203)
Q Consensus 76 ~v~~lViDEad~l~ 89 (203)
...++||||+|.++
T Consensus 197 ~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 197 GFDFAIVDEVDSIL 210 (266)
T ss_dssp SSSEEEECTHHHHT
T ss_pred CCCEEEEeccceEE
Confidence 88999999999986
No 125
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=97.57 E-value=0.00024 Score=63.23 Aligned_cols=84 Identities=14% Similarity=0.145 Sum_probs=65.9
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHH-HHHHhC-----CCccCC
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLY-DIMERM-----DVLDFR 75 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~-~~~~~~-----~~~~l~ 75 (203)
+-|++||-.||.|=++++.++...+ |++++++.++.+.++..... .+||+.||...+- ++++.. ...-..
T Consensus 122 VhvvT~NdyLA~RDae~m~~ly~~L-GLsvg~i~~~~~~~err~aY---~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R 197 (764)
T PRK12326 122 VHVITVNDYLARRDAEWMGPLYEAL-GLTVGWITEESTPEERRAAY---ACDVTYASVNEIGFDVLRDQLVTDVADLVSP 197 (764)
T ss_pred eEEEcCCHHHHHHHHHHHHHHHHhc-CCEEEEECCCCCHHHHHHHH---cCCCEEcCCcccccccchhhhccChHhhcCC
Confidence 6789999999999999999999998 99999999887765444333 5899999998864 455431 111235
Q ss_pred CccEEEEcchhHhh
Q 028826 76 NLVILVLDEADRLL 89 (203)
Q Consensus 76 ~v~~lViDEad~l~ 89 (203)
.+.+.||||+|.++
T Consensus 198 ~~~faIVDEvDSiL 211 (764)
T PRK12326 198 NPDVAIIDEADSVL 211 (764)
T ss_pred ccceeeecchhhhe
Confidence 68899999999986
No 126
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.57 E-value=0.00074 Score=59.83 Aligned_cols=40 Identities=20% Similarity=0.095 Sum_probs=30.6
Q ss_pred CCCeEEEeccHHHHHHHHhCCCccCCCccEEEEcchhHhhh
Q 028826 50 EGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLD 90 (203)
Q Consensus 50 ~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lViDEad~l~~ 90 (203)
..+||||++..-|...++. +.--+-+...+||||||.+.+
T Consensus 181 ~~AdivItNHalL~~~~~~-~~~iLP~~~~lIiDEAH~L~d 220 (636)
T TIGR03117 181 RRCRILFCTHAMLGLAFRD-KWGLLPQPDILIVDEAHLFEQ 220 (636)
T ss_pred ccCCEEEECHHHHHHHhhh-hcCCCCCCCEEEEeCCcchHH
Confidence 4579999999988876654 322345589999999999864
No 127
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.40 E-value=0.0016 Score=59.75 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=29.4
Q ss_pred CEEEEcCcHHHHHHH-HHHHHHhhhcCCCceEEEEEcCc
Q 028826 1 MGMIISPTRELSAQI-YHVAQPFISTLPDVKSMLLVGGV 38 (203)
Q Consensus 1 ~alil~PtreLa~Qi-~~~~~~l~~~~~~i~~~~~~~g~ 38 (203)
.+||++||++|+.|+ .+.+..+.+.+ ++++..+.||.
T Consensus 293 ~vvI~t~T~~Lq~Ql~~~~i~~l~~~~-~~~~~~~kg~~ 330 (820)
T PRK07246 293 QIIVSVPTKILQDQIMAEEVKAIQEVF-HIDCHSLKGPQ 330 (820)
T ss_pred cEEEEeCcHHHHHHHHHHHHHHHHHhc-CCcEEEEECCc
Confidence 379999999999999 57788887766 67777666643
No 128
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=97.39 E-value=0.00045 Score=62.55 Aligned_cols=84 Identities=17% Similarity=0.125 Sum_probs=66.4
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHH-HHHHhC-----CCccCC
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLY-DIMERM-----DVLDFR 75 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~-~~~~~~-----~~~~l~ 75 (203)
+-|++++..||.+-.+++..+-..+ |+.++++.++.+..+.... -.+||+.||..-+- ++++.. ...-..
T Consensus 120 VhVvT~NdyLA~RD~e~m~pvy~~L-GLsvg~i~~~~~~~err~a---Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r 195 (870)
T CHL00122 120 VHIVTVNDYLAKRDQEWMGQIYRFL-GLTVGLIQEGMSSEERKKN---YLKDITYVTNSELGFDYLRDNMALSLSDVVQR 195 (870)
T ss_pred eEEEeCCHHHHHHHHHHHHHHHHHc-CCceeeeCCCCChHHHHHh---cCCCCEecCCccccccchhhccCcChHHhhcc
Confidence 5689999999999999999999999 9999999888777655443 46899999998764 555541 011235
Q ss_pred CccEEEEcchhHhh
Q 028826 76 NLVILVLDEADRLL 89 (203)
Q Consensus 76 ~v~~lViDEad~l~ 89 (203)
.+.+.||||+|.++
T Consensus 196 ~~~faIVDEvDSiL 209 (870)
T CHL00122 196 PFNYCIIDEVDSIL 209 (870)
T ss_pred ccceeeeecchhhe
Confidence 68899999999986
No 129
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=97.34 E-value=0.0011 Score=59.01 Aligned_cols=115 Identities=20% Similarity=0.199 Sum_probs=71.0
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcch--------HHHHHH-H---HhCCCeEEEeccHHHHHHHHhC
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEV--------KADVKK-I---EEEGANLLIGTPGRLYDIMERM 69 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~--------~~~~~~-l---~~~~~~ilV~Tp~~l~~~~~~~ 69 (203)
||||||.- +..|+.+++..+. |.+++..++|..+. ...... + .....+|+|+|-+.+.-+=
T Consensus 258 aLIVCP~T-ii~qW~~E~~~w~---p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~--- 330 (923)
T KOG0387|consen 258 ALIVCPAT-IIHQWMKEFQTWW---PPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQG--- 330 (923)
T ss_pred eEEEccHH-HHHHHHHHHHHhC---cceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccC---
Confidence 79999976 6677878777774 46788888887662 111111 1 1235679999987765321
Q ss_pred CCccCCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHH
Q 028826 70 DVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELS 125 (203)
Q Consensus 70 ~~~~l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~ 125 (203)
..+.-..=.++|+||.|.+=.. -..+......++....+|+.++.+-+++.++-
T Consensus 331 d~l~~~~W~y~ILDEGH~IrNp--ns~islackki~T~~RiILSGTPiQNnL~ELw 384 (923)
T KOG0387|consen 331 DDLLGILWDYVILDEGHRIRNP--NSKISLACKKIRTVHRIILSGTPIQNNLTELW 384 (923)
T ss_pred cccccccccEEEecCcccccCC--ccHHHHHHHhccccceEEeeCccccchHHHHH
Confidence 1122234469999999998433 33444455666545555555555666666654
No 130
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=97.28 E-value=0.0017 Score=55.40 Aligned_cols=101 Identities=15% Similarity=0.189 Sum_probs=71.9
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHH-------------HHHHHh
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL-------------YDIMER 68 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l-------------~~~~~~ 68 (203)
||+|+.+---+.|+..++..++. ..+-.++.++++.... ...++.|+|+|-..+ .++++.
T Consensus 348 clvLcts~VSVeQWkqQfk~wst-i~d~~i~rFTsd~Ke~------~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~ 420 (776)
T KOG1123|consen 348 CLVLCTSAVSVEQWKQQFKQWST-IQDDQICRFTSDAKER------FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRG 420 (776)
T ss_pred EEEEecCccCHHHHHHHHHhhcc-cCccceEEeecccccc------CCCCCcEEEEeeehhhhcccccHHHHHHHHHHhc
Confidence 78999998889999999988854 3355667776653321 246789999996544 444444
Q ss_pred CCCccCCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChh
Q 028826 69 MDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120 (203)
Q Consensus 69 ~~~~~l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~ 120 (203)
..-.++++||+|.+-..-|+..+.-+-.+. .+.++||+-.+
T Consensus 421 ------~EWGllllDEVHvvPA~MFRRVlsiv~aHc-----KLGLTATLvRE 461 (776)
T KOG1123|consen 421 ------REWGLLLLDEVHVVPAKMFRRVLSIVQAHC-----KLGLTATLVRE 461 (776)
T ss_pred ------CeeeeEEeehhccchHHHHHHHHHHHHHHh-----hccceeEEeec
Confidence 344599999999987777777666655444 48899998554
No 131
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=97.28 E-value=0.00098 Score=60.58 Aligned_cols=84 Identities=15% Similarity=0.142 Sum_probs=65.7
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHH-HHHHh-----CCCccCC
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLY-DIMER-----MDVLDFR 75 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~-~~~~~-----~~~~~l~ 75 (203)
+-||+++..||.+=.+++..+-..+ |+.|+++.++.+..+... .-.+||+.||+..+- ++++. ....-..
T Consensus 129 VhVVTvNdYLA~RDae~m~~vy~~L-GLtvg~i~~~~~~~err~---aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR 204 (939)
T PRK12902 129 VHVVTVNDYLARRDAEWMGQVHRFL-GLSVGLIQQDMSPEERKK---NYACDITYATNSELGFDYLRDNMATDISEVVQR 204 (939)
T ss_pred eEEEeCCHHHHHhHHHHHHHHHHHh-CCeEEEECCCCChHHHHH---hcCCCeEEecCCcccccchhhhhcccccccccC
Confidence 5689999999999999999999999 999999988776554432 357999999999982 33332 1223356
Q ss_pred CccEEEEcchhHhh
Q 028826 76 NLVILVLDEADRLL 89 (203)
Q Consensus 76 ~v~~lViDEad~l~ 89 (203)
.+.+.||||+|.++
T Consensus 205 ~~~faIVDEvDSIL 218 (939)
T PRK12902 205 PFNYCVIDEVDSIL 218 (939)
T ss_pred ccceEEEeccccee
Confidence 78899999999976
No 132
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=97.09 E-value=0.0004 Score=63.45 Aligned_cols=120 Identities=23% Similarity=0.230 Sum_probs=76.5
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhC-CCccCCCccEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM-DVLDFRNLVIL 80 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~-~~~~l~~v~~l 80 (203)
++|++|-++|...-.+...+.. ..+|++++-+.|....+ ...+ ..++++|+||++.....+.- +.--+.+++.+
T Consensus 976 vvyIap~kalvker~~Dw~~r~-~~~g~k~ie~tgd~~pd--~~~v--~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~i 1050 (1230)
T KOG0952|consen 976 VVYIAPDKALVKERSDDWSKRD-ELPGIKVIELTGDVTPD--VKAV--READIVITTPEKWDGISRSWQTRKYVQSVSLI 1050 (1230)
T ss_pred EEEEcCCchhhcccccchhhhc-ccCCceeEeccCccCCC--hhhe--ecCceEEcccccccCccccccchhhhccccce
Confidence 6899999999876666555543 23489999888876654 2233 46899999999987766521 23347899999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhC-------CCCCcEEEEeeecChhHHHHHHhc
Q 028826 81 VLDEADRLLDMGFQKQISYIISRL-------PKLRRTGLFSATQTEAVEELSKAG 128 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~-------~~~~q~i~~SAT~~~~v~~~~~~~ 128 (203)
|+||.|++- .++.+.++.+.+.. +...+.+.+| |...+...++++.
T Consensus 1051 v~de~hllg-~~rgPVle~ivsr~n~~s~~t~~~vr~~gls-ta~~na~dla~wl 1103 (1230)
T KOG0952|consen 1051 VLDEIHLLG-EDRGPVLEVIVSRMNYISSQTEEPVRYLGLS-TALANANDLADWL 1103 (1230)
T ss_pred eeccccccc-CCCcceEEEEeeccccCccccCcchhhhhHh-hhhhccHHHHHHh
Confidence 999999874 34444444333332 2334555553 3333445555543
No 133
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=97.00 E-value=0.012 Score=51.67 Aligned_cols=127 Identities=14% Similarity=0.169 Sum_probs=76.1
Q ss_pred CCeEEEeccHHHHHHHHhCCCccCCCccEEEEcchhHh-hhhc-hHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhc
Q 028826 51 GANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRL-LDMG-FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAG 128 (203)
Q Consensus 51 ~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lViDEad~l-~~~~-~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~ 128 (203)
.-.|.+.|-|.|+.-+-. ...++.-+.+|+||||.= +..+ ....++.+++.- +.-.+|+.|||+.. +....|
T Consensus 140 ~TrikymTDG~LLRE~l~--Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R-~~LklIimSATlda---~kfS~y 213 (674)
T KOG0922|consen 140 DTRIKYMTDGMLLREILK--DPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKR-PDLKLIIMSATLDA---EKFSEY 213 (674)
T ss_pred ceeEEEecchHHHHHHhc--CCccccccEEEEechhhhhhHHHHHHHHHHHHHhcC-CCceEEEEeeeecH---HHHHHH
Confidence 467999999999876653 457889999999999952 1111 222333443333 34689999999983 333445
Q ss_pred CCCCeEEEeccCcccccccchhhhhccCCCCCceeEEEEEcCCCCcHHHH----HHHHhcCCCCeEEEEeccCCccc
Q 028826 129 LRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPSQL----VDLLIKNKSKKIIMYVQHGNFSE 201 (203)
Q Consensus 129 l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l----~~ll~~~~~~~~lIF~ns~~~~e 201 (203)
+...-.+.+... .-.+...|..-+..+-++.. .++-...+.+-+|||-...++.|
T Consensus 214 F~~a~i~~i~GR------------------~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe 272 (674)
T KOG0922|consen 214 FNNAPILTIPGR------------------TFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIE 272 (674)
T ss_pred hcCCceEeecCC------------------CCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHH
Confidence 555444444332 23455556554444433332 22223456667899988765543
No 134
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=96.90 E-value=0.028 Score=50.93 Aligned_cols=117 Identities=12% Similarity=0.101 Sum_probs=75.7
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
+|+++--+.|+.++...++.-. +.++....-.++. .+...+.+-++...+.|..+- .-.+++.++||
T Consensus 81 VLvVShRrSL~~sL~~rf~~~~--l~gFv~Y~d~~~~-------~i~~~~~~rLivqIdSL~R~~----~~~l~~yDvVI 147 (824)
T PF02399_consen 81 VLVVSHRRSLTKSLAERFKKAG--LSGFVNYLDSDDY-------IIDGRPYDRLIVQIDSLHRLD----GSLLDRYDVVI 147 (824)
T ss_pred EEEEEhHHHHHHHHHHHHhhcC--CCcceeeeccccc-------cccccccCeEEEEehhhhhcc----cccccccCEEE
Confidence 5788888999998887776642 2133322211111 111224567777777775543 22466788999
Q ss_pred EcchhHhhhhchHHHHH-------HHHHhCCCCCcEEEEeeecChhHHHHHHhcCCC
Q 028826 82 LDEADRLLDMGFQKQIS-------YIISRLPKLRRTGLFSATQTEAVEELSKAGLRN 131 (203)
Q Consensus 82 iDEad~l~~~~~~~~~~-------~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~ 131 (203)
+||+...+..-|.+.++ .+...+.+...+|++-|++....-+++...-++
T Consensus 148 IDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvdFl~~~Rp~ 204 (824)
T PF02399_consen 148 IDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVDFLASCRPD 204 (824)
T ss_pred EehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHHHHHHhCCC
Confidence 99999987653333322 233444677899999999999999999876654
No 135
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=96.77 E-value=0.011 Score=53.42 Aligned_cols=117 Identities=15% Similarity=0.117 Sum_probs=76.8
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcch--HHHHHHHH----hCCCeEEEeccHHHHHHHHhCCCccCC
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEV--KADVKKIE----EEGANLLIGTPGRLYDIMERMDVLDFR 75 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~--~~~~~~l~----~~~~~ilV~Tp~~l~~~~~~~~~~~l~ 75 (203)
+|||+|.- |..-+++++.+..... .+....+.|+.+. ......+. ...--|++-+-+.+.++.+. +...
T Consensus 301 ~lVV~P~s-Lv~nWkkEF~KWl~~~-~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~---il~~ 375 (776)
T KOG0390|consen 301 PLVVAPSS-LVNNWKKEFGKWLGNH-RINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK---ILLI 375 (776)
T ss_pred cEEEccHH-HHHHHHHHHHHhcccc-ccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH---HhcC
Confidence 68999965 8888899998886643 5777777877663 11111110 12235677777777766654 5667
Q ss_pred CccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeee-cChhHHHHHH
Q 028826 76 NLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT-QTEAVEELSK 126 (203)
Q Consensus 76 ~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT-~~~~v~~~~~ 126 (203)
.+.++|.||.|.+ .+-...+...+..+.-.+ .|++|.| +-+++.++..
T Consensus 376 ~~glLVcDEGHrl--kN~~s~~~kaL~~l~t~r-RVLLSGTp~QNdl~EyFn 424 (776)
T KOG0390|consen 376 RPGLLVCDEGHRL--KNSDSLTLKALSSLKTPR-RVLLTGTPIQNDLKEYFN 424 (776)
T ss_pred CCCeEEECCCCCc--cchhhHHHHHHHhcCCCc-eEEeeCCcccccHHHHHH
Confidence 8999999999997 223556667778885444 4555555 5556666554
No 136
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=96.64 E-value=0.018 Score=53.38 Aligned_cols=37 Identities=19% Similarity=0.233 Sum_probs=26.7
Q ss_pred EEEEcCcHHHHHHHHH-HHHHhhhcCC-CceEEEEEcCc
Q 028826 2 GMIISPTRELSAQIYH-VAQPFISTLP-DVKSMLLVGGV 38 (203)
Q Consensus 2 alil~PtreLa~Qi~~-~~~~l~~~~~-~i~~~~~~~g~ 38 (203)
++|.+||++|..|+.. .+..+.+.++ +++++.+.|+.
T Consensus 295 vvi~t~t~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~ 333 (850)
T TIGR01407 295 VVISTNTKVLQSQLLEKDIPLLNEILNFKINAALIKGKS 333 (850)
T ss_pred EEEEeCcHHHHHHHHHHHHHHHHHHcCCCceEEEEEcch
Confidence 6899999999999855 6666655441 47777777644
No 137
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=96.54 E-value=0.015 Score=54.54 Aligned_cols=111 Identities=18% Similarity=0.246 Sum_probs=76.2
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHH---HHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLY---DIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~---~~~~~~~~~~l~~v~ 78 (203)
+|||||+- |+-.+..++.++++. +++...+|+.......+.- -++.+|+|++-+-+. +.+.+ ..++
T Consensus 1034 SLIVCPsT-LtGHW~~E~~kf~pf---L~v~~yvg~p~~r~~lR~q-~~~~~iiVtSYDv~RnD~d~l~~-~~wN----- 1102 (1549)
T KOG0392|consen 1034 SLIVCPST-LTGHWKSEVKKFFPF---LKVLQYVGPPAERRELRDQ-YKNANIIVTSYDVVRNDVDYLIK-IDWN----- 1102 (1549)
T ss_pred eEEECCch-hhhHHHHHHHHhcch---hhhhhhcCChHHHHHHHhh-ccccceEEeeHHHHHHHHHHHHh-cccc-----
Confidence 68999975 888888888888655 6777777775544333321 145799999988875 23333 3444
Q ss_pred EEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHH
Q 028826 79 ILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELS 125 (203)
Q Consensus 79 ~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~ 125 (203)
++|+||=|.+ .. -...+....+++..+...|+.+..+-+++.++-
T Consensus 1103 YcVLDEGHVi-kN-~ktkl~kavkqL~a~hRLILSGTPIQNnvleLW 1147 (1549)
T KOG0392|consen 1103 YCVLDEGHVI-KN-SKTKLTKAVKQLRANHRLILSGTPIQNNVLELW 1147 (1549)
T ss_pred eEEecCccee-cc-hHHHHHHHHHHHhhcceEEeeCCCcccCHHHHH
Confidence 9999999977 33 356667777777666666666666666666643
No 138
>PRK10689 transcription-repair coupling factor; Provisional
Probab=96.45 E-value=0.018 Score=54.76 Aligned_cols=78 Identities=14% Similarity=0.201 Sum_probs=61.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHH---HHhCCCeEEEeccHHHHHHHHhCCCccCCCc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKK---IEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~---l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v 77 (203)
+++|++|+++-+..+.+.+.++ .|++++..++|+.+..+..+. ..++..+|||+|. .+. .++|+.++
T Consensus 811 qv~vf~n~i~~ie~la~~L~~~---~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTd-----Iie--rGIDIP~v 880 (1147)
T PRK10689 811 QVYYLYNDVENIQKAAERLAEL---VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----IIE--TGIDIPTA 880 (1147)
T ss_pred eEEEEECCHHHHHHHHHHHHHh---CCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECc-----hhh--cccccccC
Confidence 4789999998887777776665 457889999999887655443 3457899999996 333 58999999
Q ss_pred cEEEEcchhHh
Q 028826 78 VILVLDEADRL 88 (203)
Q Consensus 78 ~~lViDEad~l 88 (203)
+++|++.+|.+
T Consensus 881 ~~VIi~~ad~f 891 (1147)
T PRK10689 881 NTIIIERADHF 891 (1147)
T ss_pred CEEEEecCCCC
Confidence 99999999864
No 139
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=96.31 E-value=0.024 Score=52.79 Aligned_cols=78 Identities=14% Similarity=0.235 Sum_probs=62.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhCCCccCCCc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v 77 (203)
+++|++|+.+-+..+++.++++ .+++++..++|+.+..+....+ .++..+|||+|. .+. .++|+.++
T Consensus 662 qv~if~n~i~~~e~l~~~L~~~---~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~-----iie--~GIDIp~v 731 (926)
T TIGR00580 662 QVFYVHNRIESIEKLATQLREL---VPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTT-----IIE--TGIDIPNA 731 (926)
T ss_pred eEEEEECCcHHHHHHHHHHHHh---CCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhh--cccccccC
Confidence 4789999999888888777775 3478999999998876655533 357899999997 333 58999999
Q ss_pred cEEEEcchhHh
Q 028826 78 VILVLDEADRL 88 (203)
Q Consensus 78 ~~lViDEad~l 88 (203)
.++|++.+|.+
T Consensus 732 ~~VIi~~a~~~ 742 (926)
T TIGR00580 732 NTIIIERADKF 742 (926)
T ss_pred CEEEEecCCCC
Confidence 99999999864
No 140
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=96.31 E-value=0.0065 Score=56.35 Aligned_cols=71 Identities=23% Similarity=0.061 Sum_probs=46.4
Q ss_pred CeEEEeccHHHHHHHHhC--CCccCC----CccEEEEcchhHhhhhchHHHHHHHHHhCC-CCCcEEEEeeecChhHHH
Q 028826 52 ANLLIGTPGRLYDIMERM--DVLDFR----NLVILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSATQTEAVEE 123 (203)
Q Consensus 52 ~~ilV~Tp~~l~~~~~~~--~~~~l~----~v~~lViDEad~l~~~~~~~~~~~il~~~~-~~~q~i~~SAT~~~~v~~ 123 (203)
..++|||+..++...... +...+. -=+.||+||+|.+ +......+.+++.... -...+++.|||+|+.+..
T Consensus 563 apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaY-D~~~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~ 640 (1110)
T TIGR02562 563 APVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDY-EPEDLPALLRLVQLAGLLGSRVLLSSATLPPALVK 640 (1110)
T ss_pred CCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccC-CHHHHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHH
Confidence 689999999998766210 111111 1358999999976 3333444555554332 257889999999998665
No 141
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=96.30 E-value=0.013 Score=54.69 Aligned_cols=108 Identities=15% Similarity=0.244 Sum_probs=65.6
Q ss_pred EEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHH--HHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK--KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 3 lil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~--~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
||||||--+.+ +.-++++++ |++++...+|.-.....++ |.+.+-.||+|++-..+.+=+ ..+.-.+-+++
T Consensus 669 LIVVpTsviLn-WEMElKRwc---PglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~---~AFkrkrWqyL 741 (1958)
T KOG0391|consen 669 LIVVPTSVILN-WEMELKRWC---PGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDL---TAFKRKRWQYL 741 (1958)
T ss_pred eEEeechhhhh-hhHHHhhhC---CcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHH---HHHHhhcccee
Confidence 79999986553 556677775 5789998888754333332 444455799999887765422 12223455699
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeee-cChh
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT-QTEA 120 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT-~~~~ 120 (203)
|+|||+.+=.+. ...+..++. +. ..+.++++.| +-+.
T Consensus 742 vLDEaqnIKnfk-sqrWQAlln-fn-sqrRLLLtgTPLqNs 779 (1958)
T KOG0391|consen 742 VLDEAQNIKNFK-SQRWQALLN-FN-SQRRLLLTGTPLQNS 779 (1958)
T ss_pred ehhhhhhhcchh-HHHHHHHhc-cc-hhheeeecCCchhhH
Confidence 999999984332 333344443 32 3444555555 4433
No 142
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.23 E-value=0.0064 Score=53.77 Aligned_cols=113 Identities=18% Similarity=0.175 Sum_probs=65.7
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHH----HHHhCC-CccCCC
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYD----IMERMD-VLDFRN 76 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~----~~~~~~-~~~l~~ 76 (203)
.|||||-+ |..|++.++.+=...- .++|..++|....+...+.+ ...||+|+|-.-+.. =....+ .-.+.+
T Consensus 386 TLII~PaS-li~qW~~Ev~~rl~~n-~LsV~~~HG~n~r~i~~~~L--~~YDvViTTY~lva~~~~~e~~~~~~~spL~~ 461 (901)
T KOG4439|consen 386 TLIICPAS-LIHQWEAEVARRLEQN-ALSVYLYHGPNKREISAKEL--RKYDVVITTYNLVANKPDDELEEGKNSSPLAR 461 (901)
T ss_pred eEEeCcHH-HHHHHHHHHHHHHhhc-ceEEEEecCCccccCCHHHH--hhcceEEEeeeccccCCchhhhcccCccHHHH
Confidence 48999976 7778877775544433 68999999887655555555 468999999866544 111101 111333
Q ss_pred c--cEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChh
Q 028826 77 L--VILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120 (203)
Q Consensus 77 v--~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~ 120 (203)
+ ..+|+||||.+=.. ...-..-+..+......++.++.+-++
T Consensus 462 I~W~RVILDEAH~IrN~--~tq~S~AVC~L~a~~RWclTGTPiqNn 505 (901)
T KOG4439|consen 462 IAWSRVILDEAHNIRNS--NTQCSKAVCKLSAKSRWCLTGTPIQNN 505 (901)
T ss_pred hhHHHhhhhhhhhhccc--chhHHHHHHHHhhcceeecccCccccc
Confidence 3 36999999987433 222223344443334444444444444
No 143
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=95.94 E-value=0.057 Score=50.60 Aligned_cols=108 Identities=15% Similarity=0.157 Sum_probs=69.5
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccC-CCccEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDF-RNLVIL 80 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l-~~v~~l 80 (203)
.++|+--++|-.|+.+.+.+++.... ... ...+..+-.+.+....-.|+|+|-.++............ .+=-.+
T Consensus 306 v~fvvDR~dLd~Q~~~~f~~~~~~~~--~~~---~~~s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivv 380 (962)
T COG0610 306 VLFVVDRKDLDDQTSDEFQSFGKVAF--NDP---KAESTSELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVV 380 (962)
T ss_pred EEEEechHHHHHHHHHHHHHHHHhhh--hcc---cccCHHHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEE
Confidence 57889999999999999999976542 111 334444444455434458999999999888866211112 223378
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecC
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~ 118 (203)
|+||||+-- +...-..+-..+ ++...++||.|.-
T Consensus 381 I~DEaHRSQ---~G~~~~~~~~~~-~~a~~~gFTGTPi 414 (962)
T COG0610 381 IIDEAHRSQ---YGELAKLLKKAL-KKAIFIGFTGTPI 414 (962)
T ss_pred EEechhhcc---ccHHHHHHHHHh-ccceEEEeeCCcc
Confidence 899999852 222223333333 4588889988853
No 144
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.93 E-value=0.035 Score=47.55 Aligned_cols=107 Identities=17% Similarity=0.250 Sum_probs=67.7
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHh-C------CCcc-
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER-M------DVLD- 73 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~-~------~~~~- 73 (203)
.|||+|+-+|. |+.+++..+.++ ..++...+|. ......+.+ .+.|++.+|-.-+-.-.++ + ++.+
T Consensus 234 tLVvaP~VAlm-QW~nEI~~~T~g--slkv~~YhG~-~R~~nikel--~~YDvVLTty~vvEs~yRk~~~GfrrKngv~k 307 (791)
T KOG1002|consen 234 TLVVAPTVALM-QWKNEIERHTSG--SLKVYIYHGA-KRDKNIKEL--MNYDVVLTTYAVVESVYRKQDYGFRRKNGVDK 307 (791)
T ss_pred eeEEccHHHHH-HHHHHHHHhccC--ceEEEEEecc-cccCCHHHh--hcCcEEEEecHHHHHHHHhccccccccCCccc
Confidence 58999999875 899999999874 6787766664 334445555 4689999999888766654 1 1122
Q ss_pred ----CCCcc--EEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeec
Q 028826 74 ----FRNLV--ILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117 (203)
Q Consensus 74 ----l~~v~--~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~ 117 (203)
+++++ .+|+||||.+=+.. ....+..-.+ .....+++|.|.
T Consensus 308 e~SlLHsi~~~RiIlDEAH~IK~R~--snTArAV~~L-~tt~rw~LSGTP 354 (791)
T KOG1002|consen 308 EKSLLHSIKFYRIILDEAHNIKDRQ--SNTARAVFAL-ETTYRWCLSGTP 354 (791)
T ss_pred ccchhhhceeeeeehhhhccccccc--ccHHHHHHhh-HhhhhhhccCCc
Confidence 44554 58999999874432 2222222222 223346666664
No 145
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=95.90 E-value=0.062 Score=47.59 Aligned_cols=72 Identities=13% Similarity=0.179 Sum_probs=56.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhCCCccCCCc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v 77 (203)
.+||+++|++.+.++++.+.+. ++++..++|+.+..+....+ .++..+|||+|- .+. ..+|+.++
T Consensus 259 k~LVF~nt~~~ae~l~~~L~~~-----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTd-----v~a--rGIDip~V 326 (572)
T PRK04537 259 RTMVFVNTKAFVERVARTLERH-----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD-----VAA--RGLHIDGV 326 (572)
T ss_pred cEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEeh-----hhh--cCCCccCC
Confidence 3799999999999998888764 68899999998876655533 346789999995 333 57999999
Q ss_pred cEEEEcc
Q 028826 78 VILVLDE 84 (203)
Q Consensus 78 ~~lViDE 84 (203)
+++|.-+
T Consensus 327 ~~VInyd 333 (572)
T PRK04537 327 KYVYNYD 333 (572)
T ss_pred CEEEEcC
Confidence 9998644
No 146
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=95.89 E-value=0.045 Score=46.51 Aligned_cols=71 Identities=15% Similarity=0.224 Sum_probs=55.2
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+||.++|++-|..+.+.+... ++++..++|+.+..++...+ .++..+|||+|- .+. .++|+.+++
T Consensus 258 ~lVF~~t~~~~~~l~~~L~~~-----g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd-----v~~--rGiDip~v~ 325 (423)
T PRK04837 258 AIIFANTKHRCEEIWGHLAAD-----GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATD-----VAA--RGLHIPAVT 325 (423)
T ss_pred EEEEECCHHHHHHHHHHHHhC-----CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEec-----hhh--cCCCccccC
Confidence 799999999998888777653 78899999998766555433 357899999995 333 589999999
Q ss_pred EEEEcc
Q 028826 79 ILVLDE 84 (203)
Q Consensus 79 ~lViDE 84 (203)
++|.-+
T Consensus 326 ~VI~~d 331 (423)
T PRK04837 326 HVFNYD 331 (423)
T ss_pred EEEEeC
Confidence 887543
No 147
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=95.89 E-value=0.052 Score=50.95 Aligned_cols=114 Identities=15% Similarity=0.192 Sum_probs=73.4
Q ss_pred EEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHH---HHhC-----CCeEEEeccHHHHHHHHhCCCccC
Q 028826 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKK---IEEE-----GANLLIGTPGRLYDIMERMDVLDF 74 (203)
Q Consensus 3 lil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~---l~~~-----~~~ilV~Tp~~l~~~~~~~~~~~l 74 (203)
||++|..-+. -+.+++...+ ++++++.+|.....+.++. .... .++++++|-+.++.=- ..+.-
T Consensus 424 lvvvplst~~-~W~~ef~~w~----~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk---~~L~~ 495 (1373)
T KOG0384|consen 424 LVVVPLSTIT-AWEREFETWT----DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDK---AELSK 495 (1373)
T ss_pred EEEeehhhhH-HHHHHHHHHh----hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccH---hhhcc
Confidence 7888966544 3445555554 6889999998766554443 2223 4899999999876311 11222
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHH
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~ 126 (203)
-+-+++++||||+|=. -...+...+..+..+..+++.+..+-+.++++..
T Consensus 496 i~w~~~~vDeahrLkN--~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~s 545 (1373)
T KOG0384|consen 496 IPWRYLLVDEAHRLKN--DESKLYESLNQFKMNHRLLITGTPLQNSLKELWS 545 (1373)
T ss_pred CCcceeeecHHhhcCc--hHHHHHHHHHHhcccceeeecCCCccccHHHHHH
Confidence 2356899999999842 2344455577776666777776667777777654
No 148
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=95.85 E-value=0.19 Score=45.18 Aligned_cols=113 Identities=12% Similarity=0.254 Sum_probs=74.2
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHH---HHHhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~---~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+||+++|+..+..+.+.+.+. ++++..++|+.+..+... .+..+..+|+|||- .+. .++++.+++
T Consensus 445 vLIf~~tk~~ae~L~~~L~~~-----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~-----~L~--rGfDiP~v~ 512 (655)
T TIGR00631 445 VLVTTLTKKMAEDLTDYLKEL-----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGIN-----LLR--EGLDLPEVS 512 (655)
T ss_pred EEEEECCHHHHHHHHHHHhhh-----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcC-----hhc--CCeeeCCCc
Confidence 689999999999888888775 688888988876544433 33457789999983 333 589999999
Q ss_pred EEEEcchhHhhhhchHHHHHHHHHhCCC--CCcEEEEeeecChhHHHHHH
Q 028826 79 ILVLDEADRLLDMGFQKQISYIISRLPK--LRRTGLFSATQTEAVEELSK 126 (203)
Q Consensus 79 ~lViDEad~l~~~~~~~~~~~il~~~~~--~~q~i~~SAT~~~~v~~~~~ 126 (203)
++|+-++|..--......+-+...+..+ ....+++-...+..+...+.
T Consensus 513 lVvi~DadifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~~~~~~~ai~ 562 (655)
T TIGR00631 513 LVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIMYADKITDSMQKAIE 562 (655)
T ss_pred EEEEeCcccccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCCHHHHHHHH
Confidence 9999888875221122333333333322 23456665566655444333
No 149
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=95.71 E-value=0.12 Score=48.70 Aligned_cols=104 Identities=13% Similarity=0.194 Sum_probs=77.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhCCCccCCCc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v 77 (203)
|+-||.|--|=..++...++.+ .|..+++..+|-+...+-++.+ .++..||+|||. .+. .++|..+.
T Consensus 805 QvfYv~NrV~~Ie~~~~~L~~L---VPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT-----IIE--tGIDIPnA 874 (1139)
T COG1197 805 QVFYVHNRVESIEKKAERLREL---VPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT-----IIE--TGIDIPNA 874 (1139)
T ss_pred EEEEEecchhhHHHHHHHHHHh---CCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee-----eee--cCcCCCCC
Confidence 4667888777666666666666 5688999999988877666543 247899999997 343 68999999
Q ss_pred cEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecC
Q 028826 78 VILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (203)
Q Consensus 78 ~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~ 118 (203)
..+||+-||++ | ..++..+-.+..+..+.-..=-+.|
T Consensus 875 NTiIIe~AD~f---G-LsQLyQLRGRVGRS~~~AYAYfl~p 911 (1139)
T COG1197 875 NTIIIERADKF---G-LAQLYQLRGRVGRSNKQAYAYFLYP 911 (1139)
T ss_pred ceEEEeccccc---c-HHHHHHhccccCCccceEEEEEeec
Confidence 99999999987 4 4567777777776666554444444
No 150
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=95.64 E-value=0.048 Score=50.02 Aligned_cols=67 Identities=15% Similarity=0.155 Sum_probs=55.6
Q ss_pred CCeEEEeccHHHH-HHHHhCCCccCCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecCh
Q 028826 51 GANLLIGTPGRLY-DIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (203)
Q Consensus 51 ~~~ilV~Tp~~l~-~~~~~~~~~~l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~ 119 (203)
...|+++||..|. +++. +.++++++..+||||||+..+..-..-+-++.+.-++..-+.+|||....
T Consensus 7 ~ggi~~~T~rIl~~DlL~--~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLT--GIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred cCCEEEEechhhHhHHhc--CCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcc
Confidence 4579999998876 5665 68999999999999999998776677777777777778889999998653
No 151
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=95.49 E-value=0.15 Score=45.69 Aligned_cols=81 Identities=20% Similarity=0.343 Sum_probs=55.3
Q ss_pred CEEEEcCcHHHH-----HHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhCCCc
Q 028826 1 MGMIISPTRELS-----AQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVL 72 (203)
Q Consensus 1 ~alil~PtreLa-----~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~~~~ 72 (203)
+++|++|+.+-. .......+.+...++++++..++|+.+..+....+ .++..+|||+|. .+. .++
T Consensus 450 q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~-----vie--~Gv 522 (630)
T TIGR00643 450 QAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATT-----VIE--VGV 522 (630)
T ss_pred cEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc-----eee--cCc
Confidence 478899976321 22223333333334588999999998866555433 346899999996 222 589
Q ss_pred cCCCccEEEEcchhHh
Q 028826 73 DFRNLVILVLDEADRL 88 (203)
Q Consensus 73 ~l~~v~~lViDEad~l 88 (203)
|+.+++++|+..++.+
T Consensus 523 DiP~v~~VIi~~~~r~ 538 (630)
T TIGR00643 523 DVPNATVMVIEDAERF 538 (630)
T ss_pred ccCCCcEEEEeCCCcC
Confidence 9999999999888864
No 152
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.35 E-value=0.17 Score=45.78 Aligned_cols=81 Identities=17% Similarity=0.332 Sum_probs=55.7
Q ss_pred CEEEEcCcHHH-----HHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhCCCc
Q 028826 1 MGMIISPTREL-----SAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVL 72 (203)
Q Consensus 1 ~alil~PtreL-----a~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~~~~ 72 (203)
+++|++|+.+- ........+.+...++++++..++|+.+..+....+ .++..+|||+|. .+. .++
T Consensus 473 q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~-----vie--~Gi 545 (681)
T PRK10917 473 QAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATT-----VIE--VGV 545 (681)
T ss_pred cEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc-----cee--eCc
Confidence 47899996431 112233344444445568999999998766555533 346789999996 222 589
Q ss_pred cCCCccEEEEcchhHh
Q 028826 73 DFRNLVILVLDEADRL 88 (203)
Q Consensus 73 ~l~~v~~lViDEad~l 88 (203)
|+.+++++|+..++.+
T Consensus 546 Dip~v~~VIi~~~~r~ 561 (681)
T PRK10917 546 DVPNATVMVIENAERF 561 (681)
T ss_pred ccCCCcEEEEeCCCCC
Confidence 9999999999988864
No 153
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=95.34 E-value=0.13 Score=44.21 Aligned_cols=69 Identities=16% Similarity=0.208 Sum_probs=54.2
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+||.++|++-+..+.+.+.+. ++++..++|+.+..+....+ .++..+|||+|- .+. ..+|+.+++
T Consensus 248 ~lVF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTd-----v~~--rGiDip~v~ 315 (456)
T PRK10590 248 VLVFTRTKHGANHLAEQLNKD-----GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATD-----IAA--RGLDIEELP 315 (456)
T ss_pred EEEEcCcHHHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcc-----HHh--cCCCcccCC
Confidence 699999999999888877654 78899999998876555433 346789999995 333 579999999
Q ss_pred EEEE
Q 028826 79 ILVL 82 (203)
Q Consensus 79 ~lVi 82 (203)
++|.
T Consensus 316 ~VI~ 319 (456)
T PRK10590 316 HVVN 319 (456)
T ss_pred EEEE
Confidence 8875
No 154
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=95.34 E-value=0.088 Score=44.84 Aligned_cols=69 Identities=14% Similarity=0.214 Sum_probs=55.1
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+||+++|++-+..+...+++. ++++..++|+.+..+....+ .++..+|||+|- .+. ..+|+.++.
T Consensus 248 ~lVF~~s~~~~~~l~~~L~~~-----~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd-----~~~--~GiDip~v~ 315 (434)
T PRK11192 248 SIVFVRTRERVHELAGWLRKA-----GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATD-----VAA--RGIDIDDVS 315 (434)
T ss_pred EEEEeCChHHHHHHHHHHHhC-----CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEcc-----ccc--cCccCCCCC
Confidence 799999999999998888763 78999999998876665533 357899999994 333 578999999
Q ss_pred EEEE
Q 028826 79 ILVL 82 (203)
Q Consensus 79 ~lVi 82 (203)
++|.
T Consensus 316 ~VI~ 319 (434)
T PRK11192 316 HVIN 319 (434)
T ss_pred EEEE
Confidence 9884
No 155
>KOG3089 consensus Predicted DEAD-box-containing helicase [General function prediction only]
Probab=95.33 E-value=0.037 Score=42.33 Aligned_cols=43 Identities=30% Similarity=0.547 Sum_probs=36.1
Q ss_pred HHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEEEcc
Q 028826 41 KADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDE 84 (203)
Q Consensus 41 ~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lViDE 84 (203)
+++...+.++..++-||||+|+-++++. +.+.++++.++|+|-
T Consensus 186 ~~~~k~~k~~~v~~gIgTp~Ri~~lv~~-~~f~~~~lk~iIlD~ 228 (271)
T KOG3089|consen 186 QAQVKLLKKRVVHLGIGTPGRIKELVKQ-GGFNLSPLKFIILDW 228 (271)
T ss_pred HHHHHHHhhcceeEeecCcHHHHHHHHh-cCCCCCcceeEEeec
Confidence 3455555567789999999999999999 779999999999874
No 156
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.31 E-value=0.12 Score=44.37 Aligned_cols=110 Identities=15% Similarity=0.137 Sum_probs=68.4
Q ss_pred CccCCCccEEEEcchhHh-hhhc-hHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccc
Q 028826 71 VLDFRNLVILVLDEADRL-LDMG-FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASA 148 (203)
Q Consensus 71 ~~~l~~v~~lViDEad~l-~~~~-~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~ 148 (203)
...++.-+.+|+||||.= +..+ ....++.++..-| .-.+++.|||+. ..-.+.|+.++-.+.+...
T Consensus 154 ~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~rp-dLk~vvmSatl~---a~Kfq~yf~n~Pll~vpg~-------- 221 (699)
T KOG0925|consen 154 DPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNRP-DLKLVVMSATLD---AEKFQRYFGNAPLLAVPGT-------- 221 (699)
T ss_pred CcccccccEEEechhhhhhHHHHHHHHHHHHHHhhCC-CceEEEeecccc---hHHHHHHhCCCCeeecCCC--------
Confidence 345788999999999962 2222 3444555555554 788999999987 3344557777766766543
Q ss_pred hhhhhccCCCCCceeEEEEEcCCCCcHHHHHHHH----hcCCCCeEEEEeccCCcccCC
Q 028826 149 SSQQLASSKTPLGLHLEYLECESDKKPSQLVDLL----IKNKSKKIIMYVQHGNFSEDG 203 (203)
Q Consensus 149 ~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll----~~~~~~~~lIF~ns~~~~e~a 203 (203)
..+..+|..-.+.+..+..+..+ .....+-+++|....+.-|+|
T Consensus 222 -----------~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~a 269 (699)
T KOG0925|consen 222 -----------HPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDA 269 (699)
T ss_pred -----------CceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHH
Confidence 12334554444455555554444 234567899998877665543
No 157
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=95.19 E-value=0.29 Score=45.38 Aligned_cols=81 Identities=19% Similarity=0.166 Sum_probs=55.9
Q ss_pred CCeEEEeccHHHHHHHHhCCCccCCCccEEEEcchhHhh-hhc-hHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhc
Q 028826 51 GANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLL-DMG-FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAG 128 (203)
Q Consensus 51 ~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lViDEad~l~-~~~-~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~ 128 (203)
...++++|.|-|+..+.. ...+.++.++|+||+|.=- +.+ +.-.++.++..- +.-++|+.|||+. .+....|
T Consensus 264 ~t~L~fcTtGvLLr~L~~--~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~-p~LkvILMSAT~d---ae~fs~Y 337 (924)
T KOG0920|consen 264 ETRLLFCTTGVLLRRLQS--DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRN-PDLKVILMSATLD---AELFSDY 337 (924)
T ss_pred ceeEEEecHHHHHHHhcc--CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhC-CCceEEEeeeecc---hHHHHHH
Confidence 467999999999998864 5678999999999999632 233 334444555444 7889999999998 3333334
Q ss_pred CCCCeEEEe
Q 028826 129 LRNPVRIEV 137 (203)
Q Consensus 129 l~~~~~i~~ 137 (203)
....-.+.+
T Consensus 338 F~~~pvi~i 346 (924)
T KOG0920|consen 338 FGGCPVITI 346 (924)
T ss_pred hCCCceEee
Confidence 444333433
No 158
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=95.13 E-value=0.14 Score=44.68 Aligned_cols=70 Identities=13% Similarity=0.167 Sum_probs=57.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhCCCccCCCc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v 77 (203)
.+||++.|+..+..+...+++. |+++..++|+.+..+..+.+ .++..+|+|+|--. . +.+|+.++
T Consensus 275 ~~IVF~~tk~~~~~l~~~l~~~-----g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDva------a-RGiDi~~v 342 (513)
T COG0513 275 RVIVFVRTKRLVEELAESLRKR-----GFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVA------A-RGLDIPDV 342 (513)
T ss_pred eEEEEeCcHHHHHHHHHHHHHC-----CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechh------h-ccCCcccc
Confidence 3899999999999988777765 79999999999987777655 35789999999633 2 68999999
Q ss_pred cEEEE
Q 028826 78 VILVL 82 (203)
Q Consensus 78 ~~lVi 82 (203)
.++|=
T Consensus 343 ~~Vin 347 (513)
T COG0513 343 SHVIN 347 (513)
T ss_pred ceeEE
Confidence 98864
No 159
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=95.12 E-value=0.11 Score=44.60 Aligned_cols=72 Identities=14% Similarity=0.243 Sum_probs=56.1
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+||+|+|++-+..+++.+.+. ++++..++|+.+..++...+ .++..+|+|+|- .+. .++|+.+++
T Consensus 245 ~lVF~~t~~~~~~l~~~L~~~-----~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTd-----v~~--rGiDi~~v~ 312 (460)
T PRK11776 245 CVVFCNTKKECQEVADALNAQ-----GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATD-----VAA--RGLDIKALE 312 (460)
T ss_pred eEEEECCHHHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEec-----ccc--cccchhcCC
Confidence 799999999999888887664 78899999998876655533 346789999994 232 579999999
Q ss_pred EEEEcch
Q 028826 79 ILVLDEA 85 (203)
Q Consensus 79 ~lViDEa 85 (203)
++|.-+.
T Consensus 313 ~VI~~d~ 319 (460)
T PRK11776 313 AVINYEL 319 (460)
T ss_pred eEEEecC
Confidence 9886443
No 160
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.05 E-value=0.15 Score=43.97 Aligned_cols=72 Identities=15% Similarity=0.252 Sum_probs=56.3
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHH---HHhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKK---IEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~---l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+||.++|+.-+.++...+++. ++++..++||.+..+.... ..++..+|||+|-. +. ..+|+.+++
T Consensus 229 ~IIF~~s~~~~e~la~~L~~~-----g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~-----~~--~GID~p~V~ 296 (470)
T TIGR00614 229 GIIYCPSRKKSEQVTASLQNL-----GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVA-----FG--MGINKPDVR 296 (470)
T ss_pred eEEEECcHHHHHHHHHHHHhc-----CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEech-----hh--ccCCcccce
Confidence 589999999999988887764 7889999999887655443 23578999999962 22 578999999
Q ss_pred EEEEcch
Q 028826 79 ILVLDEA 85 (203)
Q Consensus 79 ~lViDEa 85 (203)
++|.-..
T Consensus 297 ~VI~~~~ 303 (470)
T TIGR00614 297 FVIHYSL 303 (470)
T ss_pred EEEEeCC
Confidence 9986544
No 161
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=95.04 E-value=0.065 Score=49.06 Aligned_cols=84 Identities=13% Similarity=0.107 Sum_probs=63.2
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHH-HHHHhCCC-----ccCC
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLY-DIMERMDV-----LDFR 75 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~-~~~~~~~~-----~~l~ 75 (203)
+=|++.+--||..=..++..+-..+ |+.|+++..+.+..+.... -.+||..||..-+. ++++..=. .-..
T Consensus 122 VhVVTvNdYLA~RDae~mg~vy~fL-GLsvG~i~~~~~~~~rr~a---Y~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR 197 (925)
T PRK12903 122 VIVSTVNEYLAERDAEEMGKVFNFL-GLSVGINKANMDPNLKREA---YACDITYSVHSELGFDYLRDNMVSSKEEKVQR 197 (925)
T ss_pred eEEEecchhhhhhhHHHHHHHHHHh-CCceeeeCCCCChHHHHHh---ccCCCeeecCcccchhhhhhcccccHHHhcCc
Confidence 3467788889988888888888888 9999999888776544433 46999999998874 56664111 1146
Q ss_pred CccEEEEcchhHhh
Q 028826 76 NLVILVLDEADRLL 89 (203)
Q Consensus 76 ~v~~lViDEad~l~ 89 (203)
.+.+.||||+|.++
T Consensus 198 ~~~faIVDEVDSIL 211 (925)
T PRK12903 198 GLNFCLIDEVDSIL 211 (925)
T ss_pred ccceeeeccchhee
Confidence 78899999999976
No 162
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=94.85 E-value=0.18 Score=45.20 Aligned_cols=70 Identities=16% Similarity=0.260 Sum_probs=52.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHH---HHHhCCCeEEEeccHHHHHHHHhCCCccCCCc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~---~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v 77 (203)
.+||+|+|+.-+.++.+.+.+. ++.+..++|+.+..+... ...++..+|||+|- .+. ..+|+.++
T Consensus 247 ~~IVF~~tk~~a~~l~~~L~~~-----g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATd-----v~a--rGIDip~V 314 (629)
T PRK11634 247 AAIIFVRTKNATLEVAEALERN-----GYNSAALNGDMNQALREQTLERLKDGRLDILIATD-----VAA--RGLDVERI 314 (629)
T ss_pred CEEEEeccHHHHHHHHHHHHhC-----CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcc-----hHh--cCCCcccC
Confidence 4799999999999888877664 688899999887665544 33457899999994 333 46777777
Q ss_pred cEEEE
Q 028826 78 VILVL 82 (203)
Q Consensus 78 ~~lVi 82 (203)
.++|.
T Consensus 315 ~~VI~ 319 (629)
T PRK11634 315 SLVVN 319 (629)
T ss_pred CEEEE
Confidence 77764
No 163
>PTZ00110 helicase; Provisional
Probab=94.84 E-value=0.18 Score=44.40 Aligned_cols=69 Identities=10% Similarity=0.108 Sum_probs=53.8
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHH---HHhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKK---IEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~---l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+||.|+|++-|..+.+.++.. ++.+..++|+.+..++... ..++...|||+|- .+. ..+|+.+++
T Consensus 380 ~LIF~~t~~~a~~l~~~L~~~-----g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTd-----v~~--rGIDi~~v~ 447 (545)
T PTZ00110 380 ILIFVETKKGADFLTKELRLD-----GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATD-----VAS--RGLDVKDVK 447 (545)
T ss_pred EEEEecChHHHHHHHHHHHHc-----CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcc-----hhh--cCCCcccCC
Confidence 799999999999888877643 6788999999887665543 3346789999995 232 589999999
Q ss_pred EEEE
Q 028826 79 ILVL 82 (203)
Q Consensus 79 ~lVi 82 (203)
++|.
T Consensus 448 ~VI~ 451 (545)
T PTZ00110 448 YVIN 451 (545)
T ss_pred EEEE
Confidence 9886
No 164
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.84 E-value=0.42 Score=42.65 Aligned_cols=120 Identities=15% Similarity=0.160 Sum_probs=69.1
Q ss_pred CeEEEeccHHHHHHHHhCCCccCCCccEEEEcchhHh-hhhc-hHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcC
Q 028826 52 ANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRL-LDMG-FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGL 129 (203)
Q Consensus 52 ~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lViDEad~l-~~~~-~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l 129 (203)
.-+=+.|-|.|+.=+- ...+|.+-+.+||||||.= +..+ ....+..|. .+.+.-..++.|||+.. +.|-. |+
T Consensus 356 TvlKYMTDGmLlREfL--~epdLasYSViiiDEAHERTL~TDILfgLvKDIa-r~RpdLKllIsSAT~DA--ekFS~-fF 429 (902)
T KOG0923|consen 356 TVLKYMTDGMLLREFL--SEPDLASYSVIIVDEAHERTLHTDILFGLVKDIA-RFRPDLKLLISSATMDA--EKFSA-FF 429 (902)
T ss_pred eeeeeecchhHHHHHh--ccccccceeEEEeehhhhhhhhhhHHHHHHHHHH-hhCCcceEEeeccccCH--HHHHH-hc
Confidence 4566889998876443 4678999999999999952 2211 222233333 33467789999999984 33333 44
Q ss_pred CCCeEEEeccCcccccccchhhhhccCCCCCceeEEEEEcCCCCcHHHHHHHHh----cCCCCeEEEEec
Q 028826 130 RNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPSQLVDLLI----KNKSKKIIMYVQ 195 (203)
Q Consensus 130 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~----~~~~~~~lIF~n 195 (203)
.+.-++.+... ...+..+|...++-+-+++-+..+. ..+.+-+|||-.
T Consensus 430 DdapIF~iPGR------------------RyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFlt 481 (902)
T KOG0923|consen 430 DDAPIFRIPGR------------------RYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLT 481 (902)
T ss_pred cCCcEEeccCc------------------ccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEec
Confidence 54444444332 3445556665665555544443332 123345666643
No 165
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=94.79 E-value=0.16 Score=43.91 Aligned_cols=68 Identities=16% Similarity=0.233 Sum_probs=55.5
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHH---hCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIE---EEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~---~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
.+|++.++.-|.-+.+.+.+. +++++.++||.+.++....|. .+..+|+|+|--. . +.+|..+|+
T Consensus 520 iIIFvN~kk~~d~lAk~LeK~-----g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvA------g-RGIDIpnVS 587 (673)
T KOG0333|consen 520 IIIFVNTKKGADALAKILEKA-----GYKVTTLHGGKSQEQRENALADFREGTGDILVATDVA------G-RGIDIPNVS 587 (673)
T ss_pred EEEEEechhhHHHHHHHHhhc-----cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEeccc------c-cCCCCCccc
Confidence 589999999888777777776 799999999999887777553 3678999999632 2 689999999
Q ss_pred EEE
Q 028826 79 ILV 81 (203)
Q Consensus 79 ~lV 81 (203)
++|
T Consensus 588 lVi 590 (673)
T KOG0333|consen 588 LVI 590 (673)
T ss_pred eee
Confidence 887
No 166
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=94.78 E-value=0.094 Score=42.34 Aligned_cols=112 Identities=17% Similarity=0.139 Sum_probs=67.7
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHH--------------H
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIM--------------E 67 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~--------------~ 67 (203)
+|.++.+-+|-....+.++.++.. .+.+..+..-... ... .-+-.||.+|-..|..-- .
T Consensus 94 ~vwvS~s~dL~~Da~RDl~DIG~~--~i~v~~l~~~~~~--~~~---~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~ 166 (303)
T PF13872_consen 94 AVWVSVSNDLKYDAERDLRDIGAD--NIPVHPLNKFKYG--DII---RLKEGVLFSTYSTLISESQSGGKYRSRLDQLVD 166 (303)
T ss_pred eEEEECChhhhhHHHHHHHHhCCC--cccceechhhccC--cCC---CCCCCccchhHHHHHhHHhccCCccchHHHHHH
Confidence 678888999999999999998765 3444333321100 000 123358888866654432 2
Q ss_pred hCCCccCCCccEEEEcchhHhhhhc--------hHHHHHHHHHhCCCCCcEEEEeeecChhHHHH
Q 028826 68 RMDVLDFRNLVILVLDEADRLLDMG--------FQKQISYIISRLPKLRRTGLFSATQTEAVEEL 124 (203)
Q Consensus 68 ~~~~~~l~~v~~lViDEad~l~~~~--------~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~ 124 (203)
.++ -+++ ..+|+||+|..=... ....+..+...+| +..++.+|||--.+.+++
T Consensus 167 W~g-~dfd--gvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP-~ARvvY~SATgasep~Nm 227 (303)
T PF13872_consen 167 WCG-EDFD--GVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLP-NARVVYASATGASEPRNM 227 (303)
T ss_pred HHh-cCCC--ceEEeccchhcCCCCccCccccHHHHHHHHHHHhCC-CCcEEEecccccCCCcee
Confidence 211 1222 389999999984321 2234556677786 445999999986665554
No 167
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=94.42 E-value=0.25 Score=42.70 Aligned_cols=71 Identities=13% Similarity=0.148 Sum_probs=54.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHH---HHhCCCeEEEeccHHHHHHHHhCCCccCCCc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKK---IEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~---l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v 77 (203)
.+||++++++-+..+++.+.+. ++++..++|+...+++... ..++...|||+|. .+. .++|+.++
T Consensus 337 ~~IVF~~s~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~-----~l~--~GIDi~~v 404 (475)
T PRK01297 337 RVMVFANRKDEVRRIEERLVKD-----GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATD-----VAG--RGIHIDGI 404 (475)
T ss_pred eEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEcc-----ccc--cCCcccCC
Confidence 3799999999998888777654 6788889998877665443 3356789999994 333 58999999
Q ss_pred cEEEEc
Q 028826 78 VILVLD 83 (203)
Q Consensus 78 ~~lViD 83 (203)
+++|.-
T Consensus 405 ~~VI~~ 410 (475)
T PRK01297 405 SHVINF 410 (475)
T ss_pred CEEEEe
Confidence 999864
No 168
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=94.39 E-value=0.25 Score=44.18 Aligned_cols=69 Identities=12% Similarity=0.161 Sum_probs=51.1
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+||.++|++-+.++...+++. ++++..++||.+..+....+ ..+..+|||+|.. +. .++|+.+++
T Consensus 239 ~IIFc~tr~~~e~la~~L~~~-----g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a-----~~--~GIDip~V~ 306 (607)
T PRK11057 239 GIIYCNSRAKVEDTAARLQSR-----GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVA-----FG--MGINKPNVR 306 (607)
T ss_pred EEEEECcHHHHHHHHHHHHhC-----CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEech-----hh--ccCCCCCcC
Confidence 689999999999888877764 78899999998876555433 2467899999963 11 456666666
Q ss_pred EEEE
Q 028826 79 ILVL 82 (203)
Q Consensus 79 ~lVi 82 (203)
++|.
T Consensus 307 ~VI~ 310 (607)
T PRK11057 307 FVVH 310 (607)
T ss_pred EEEE
Confidence 6664
No 169
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=94.37 E-value=0.64 Score=40.53 Aligned_cols=110 Identities=14% Similarity=0.306 Sum_probs=78.3
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHH---HHHhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~---~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+||.+-|+-+|..+-+-+... |+++.+++++.+.-+... .|..+..||+|| ..+++. ++|+-.|+
T Consensus 449 vLVTtLTKkmAEdLT~Yl~e~-----gikv~YlHSdidTlER~eIirdLR~G~~DvLVG-----INLLRE--GLDiPEVs 516 (663)
T COG0556 449 VLVTTLTKKMAEDLTEYLKEL-----GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVG-----INLLRE--GLDLPEVS 516 (663)
T ss_pred EEEEeehHHHHHHHHHHHHhc-----CceEEeeeccchHHHHHHHHHHHhcCCccEEEe-----ehhhhc--cCCCccee
Confidence 466677776665555544443 899999999988665554 455588999999 457775 79999999
Q ss_pred EEEEcchhHhhhhchHHHHHHHHHhCC-----CCCcEEEEeeecChhHHHHHH
Q 028826 79 ILVLDEADRLLDMGFQKQISYIISRLP-----KLRRTGLFSATQTEAVEELSK 126 (203)
Q Consensus 79 ~lViDEad~l~~~~~~~~~~~il~~~~-----~~~q~i~~SAT~~~~v~~~~~ 126 (203)
++.|=+||. .||...-+.++.-+. .+-.+|+..-.+++.+...+.
T Consensus 517 LVAIlDADK---eGFLRse~SLIQtIGRAARN~~GkvIlYAD~iT~sM~~Ai~ 566 (663)
T COG0556 517 LVAILDADK---EGFLRSERSLIQTIGRAARNVNGKVILYADKITDSMQKAID 566 (663)
T ss_pred EEEEeecCc---cccccccchHHHHHHHHhhccCCeEEEEchhhhHHHHHHHH
Confidence 999999996 466555555554443 245788888888877665544
No 170
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=94.35 E-value=0.21 Score=47.90 Aligned_cols=73 Identities=21% Similarity=0.278 Sum_probs=53.9
Q ss_pred CEEEEcCcH---HHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCC-
Q 028826 1 MGMIISPTR---ELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRN- 76 (203)
Q Consensus 1 ~alil~Ptr---eLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~- 76 (203)
.+||.+||+ +-|.++...+++. |+++..++|+... ...+...++..+|||||... .+.+. +++|+.+
T Consensus 328 ~~IVFv~t~~~~~~a~~l~~~L~~~-----g~~a~~lhg~~~~-~~l~~Fr~G~~~vLVata~~-tdv~a--RGIDip~~ 398 (1171)
T TIGR01054 328 GGIVYVSIDYGKEKAEEIAEFLENH-----GVKAVAYHATKPK-EDYEKFAEGEIDVLIGVASY-YGTLV--RGLDLPER 398 (1171)
T ss_pred CEEEEEeccccHHHHHHHHHHHHhC-----CceEEEEeCCCCH-HHHHHHHcCCCCEEEEeccc-cCccc--ccCCCCcc
Confidence 379999999 8888887777664 7899999999753 34455557889999998411 11122 5789888
Q ss_pred ccEEEE
Q 028826 77 LVILVL 82 (203)
Q Consensus 77 v~~lVi 82 (203)
++++|+
T Consensus 399 V~~vI~ 404 (1171)
T TIGR01054 399 VRYAVF 404 (1171)
T ss_pred ccEEEE
Confidence 799888
No 171
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.26 E-value=0.11 Score=46.83 Aligned_cols=110 Identities=19% Similarity=0.194 Sum_probs=63.0
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHH-HHHhCCCccCCCccEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYD-IMERMDVLDFRNLVIL 80 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~-~~~~~~~~~l~~v~~l 80 (203)
.||++|+- +..|...++.+..+.. .+.+...+| ...+...+ .++||+++|++.+.. -+. --.--.+
T Consensus 192 tLivcp~s-~~~qW~~elek~~~~~-~l~v~v~~g---r~kd~~el--~~~dVVltTy~il~~~~l~------~i~w~Ri 258 (674)
T KOG1001|consen 192 TLIVCPTS-LLTQWKTELEKVTEED-KLSIYVYHG---RTKDKSEL--NSYDVVLTTYDILKNSPLV------KIKWLRI 258 (674)
T ss_pred eeEecchH-HHHHHHHHHhccCCcc-ceEEEEecc---cccccchh--cCCceEEeeHHHhhccccc------ceeEEEE
Confidence 47888876 5567777776665543 677777776 22233333 468899999988763 111 1223478
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHH
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~ 126 (203)
|+||||.+-... .........+....+.++.+...-..+.++..
T Consensus 259 ildea~~ikn~~--tq~~~a~~~L~a~~RWcLtgtPiqn~~~~lys 302 (674)
T KOG1001|consen 259 VLDEAHTIKNKD--TQIFKAVCQLDAKYRWCLTGTPIQNNLDELYS 302 (674)
T ss_pred EeccccccCCcc--hHhhhhheeeccceeeeecCChhhhhHHHHHH
Confidence 999999875443 22333344443344444444444444555443
No 172
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=94.26 E-value=0.33 Score=42.54 Aligned_cols=71 Identities=8% Similarity=0.141 Sum_probs=54.8
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+||.++|+.-+..+.+.+... . ++++..++|+.+..++...+ .++..+|||+|. .+. .++|+.+++
T Consensus 370 ~iVFv~s~~~a~~l~~~L~~~---~-g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTd-----vl~--rGiDip~v~ 438 (518)
T PLN00206 370 AVVFVSSRLGADLLANAITVV---T-GLKALSIHGEKSMKERREVMKSFLVGEVPVIVATG-----VLG--RGVDLLRVR 438 (518)
T ss_pred EEEEcCCchhHHHHHHHHhhc---c-CcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEec-----Hhh--ccCCcccCC
Confidence 689999999888777766543 2 78899999998876655543 347789999997 232 589999999
Q ss_pred EEEEc
Q 028826 79 ILVLD 83 (203)
Q Consensus 79 ~lViD 83 (203)
++|.=
T Consensus 439 ~VI~~ 443 (518)
T PLN00206 439 QVIIF 443 (518)
T ss_pred EEEEe
Confidence 99863
No 173
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=94.25 E-value=0.25 Score=42.60 Aligned_cols=104 Identities=16% Similarity=0.205 Sum_probs=62.3
Q ss_pred EEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEEE
Q 028826 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVL 82 (203)
Q Consensus 3 lil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lVi 82 (203)
||+||.. +-.-+.+.++++.+.. ..+..+.++.+.-... ...+.|.|.+-+.+..+-+ .+.-..-+.+|+
T Consensus 245 liVcPAs-vrftWa~al~r~lps~--~pi~vv~~~~D~~~~~----~t~~~v~ivSye~ls~l~~---~l~~~~~~vvI~ 314 (689)
T KOG1000|consen 245 LIVCPAS-VRFTWAKALNRFLPSI--HPIFVVDKSSDPLPDV----CTSNTVAIVSYEQLSLLHD---ILKKEKYRVVIF 314 (689)
T ss_pred EEEecHH-HhHHHHHHHHHhcccc--cceEEEecccCCcccc----ccCCeEEEEEHHHHHHHHH---HHhcccceEEEE
Confidence 7888965 3344556666665543 2244555554432221 2236788888877665443 233445789999
Q ss_pred cchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeec
Q 028826 83 DEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117 (203)
Q Consensus 83 DEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~ 117 (203)
||.|.|=+. .....+.++..+.....+|++|.|.
T Consensus 315 DEsH~Lk~s-ktkr~Ka~~dllk~akhvILLSGTP 348 (689)
T KOG1000|consen 315 DESHMLKDS-KTKRTKAATDLLKVAKHVILLSGTP 348 (689)
T ss_pred echhhhhcc-chhhhhhhhhHHHHhhheEEecCCc
Confidence 999977433 3334555555555566778888874
No 174
>PTZ00424 helicase 45; Provisional
Probab=94.05 E-value=0.29 Score=41.07 Aligned_cols=70 Identities=14% Similarity=0.185 Sum_probs=53.5
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHH---HHhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKK---IEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~---l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+||.++|++-+..+.+.+... ++++..++|+.+..++... ..++..+|||+|- .+. .++|+.+++
T Consensus 270 ~ivF~~t~~~~~~l~~~l~~~-----~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~-----~l~--~GiDip~v~ 337 (401)
T PTZ00424 270 AIIYCNTRRKVDYLTKKMHER-----DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTD-----LLA--RGIDVQQVS 337 (401)
T ss_pred EEEEecCcHHHHHHHHHHHHC-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcc-----ccc--CCcCcccCC
Confidence 689999999888777766553 6889999999876655443 3346799999995 232 579999999
Q ss_pred EEEEc
Q 028826 79 ILVLD 83 (203)
Q Consensus 79 ~lViD 83 (203)
++|.-
T Consensus 338 ~VI~~ 342 (401)
T PTZ00424 338 LVINY 342 (401)
T ss_pred EEEEE
Confidence 99863
No 175
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=93.94 E-value=0.39 Score=42.74 Aligned_cols=69 Identities=12% Similarity=0.197 Sum_probs=50.9
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+||.++|+..+.++.+.+... ++++..++||.+.++....+ ..+.++|||+|-.- . .++|+.+++
T Consensus 227 ~IIf~~sr~~~e~la~~L~~~-----g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~-----~--~GID~p~v~ 294 (591)
T TIGR01389 227 GIIYASSRKKVEELAERLESQ-----GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAF-----G--MGIDKPNVR 294 (591)
T ss_pred EEEEECcHHHHHHHHHHHHhC-----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechh-----h--ccCcCCCCC
Confidence 689999999999888877653 78899999998876555433 24678999999522 2 356666777
Q ss_pred EEEE
Q 028826 79 ILVL 82 (203)
Q Consensus 79 ~lVi 82 (203)
++|.
T Consensus 295 ~VI~ 298 (591)
T TIGR01389 295 FVIH 298 (591)
T ss_pred EEEE
Confidence 6664
No 176
>PRK09401 reverse gyrase; Reviewed
Probab=93.94 E-value=0.15 Score=48.76 Aligned_cols=72 Identities=17% Similarity=0.403 Sum_probs=51.8
Q ss_pred CEEEEcCcHHH---HHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCC-
Q 028826 1 MGMIISPTREL---SAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRN- 76 (203)
Q Consensus 1 ~alil~PtreL---a~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~- 76 (203)
.+||.|||++- |..+.+.+++. |+++..++|+. ........++..+|||||..- .+.+. +++|+.+
T Consensus 330 ~~LIFv~t~~~~~~ae~l~~~L~~~-----gi~v~~~hg~l--~~~l~~F~~G~~~VLVatas~-tdv~a--RGIDiP~~ 399 (1176)
T PRK09401 330 GGLIFVPSDKGKEYAEELAEYLEDL-----GINAELAISGF--ERKFEKFEEGEVDVLVGVASY-YGVLV--RGIDLPER 399 (1176)
T ss_pred CEEEEEecccChHHHHHHHHHHHHC-----CCcEEEEeCcH--HHHHHHHHCCCCCEEEEecCC-CCcee--ecCCCCcc
Confidence 47999999554 77777666664 79999999998 334456667889999998522 11111 5788887
Q ss_pred ccEEEE
Q 028826 77 LVILVL 82 (203)
Q Consensus 77 v~~lVi 82 (203)
++++|.
T Consensus 400 IryVI~ 405 (1176)
T PRK09401 400 IRYAIF 405 (1176)
T ss_pred eeEEEE
Confidence 888887
No 177
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=93.77 E-value=0.37 Score=43.36 Aligned_cols=104 Identities=16% Similarity=0.242 Sum_probs=67.2
Q ss_pred EEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH--------HhCCCeEEEeccHHHH---HHHHhCCC
Q 028826 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI--------EEEGANLLIGTPGRLY---DIMERMDV 71 (203)
Q Consensus 3 lil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l--------~~~~~~ilV~Tp~~l~---~~~~~~~~ 71 (203)
|||+|..- ++.+..+++.++|+++++-.-|+.......+.. ...+.||+|+|-..+. .++..
T Consensus 621 LVVtpaSt----L~NWaqEisrFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qk--- 693 (1185)
T KOG0388|consen 621 LVVTPAST----LHNWAQEISRFLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQK--- 693 (1185)
T ss_pred EEeehHHH----HhHHHHHHHHhCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHh---
Confidence 67888554 456777788888899999888887654444321 2367899999876653 23333
Q ss_pred ccCCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecCh
Q 028826 72 LDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (203)
Q Consensus 72 ~~l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~ 119 (203)
-.-++.|+|||-.+=+ .....++.+++.-. +-.++++.|.-+
T Consensus 694 ---vKWQYMILDEAQAIKS-SsS~RWKtLLsF~c--RNRLLLTGTPIQ 735 (1185)
T KOG0388|consen 694 ---VKWQYMILDEAQAIKS-SSSSRWKTLLSFKC--RNRLLLTGTPIQ 735 (1185)
T ss_pred ---hhhhheehhHHHHhhh-hhhhHHHHHhhhhc--cceeeecCCccc
Confidence 1235899999987743 34555666666543 334666677544
No 178
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=93.74 E-value=0.41 Score=44.25 Aligned_cols=71 Identities=15% Similarity=0.201 Sum_probs=55.7
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHh---CCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEE---EGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~---~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+||++|+++-+.++.+.+++... .++.+..++|+.+..++...+.. +...|||+|. .. . .++++.+++
T Consensus 215 iLVFlpg~~ei~~l~~~L~~~~~--~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATn-----IA-E-rsLtIp~V~ 285 (812)
T PRK11664 215 LLLFLPGVGEIQRVQEQLASRVA--SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATN-----IA-E-TSLTIEGIR 285 (812)
T ss_pred EEEEcCCHHHHHHHHHHHHHhcc--CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecc-----hH-H-hcccccCce
Confidence 69999999999988888876322 26889999999998877776642 3468999998 22 3 689999999
Q ss_pred EEE
Q 028826 79 ILV 81 (203)
Q Consensus 79 ~lV 81 (203)
+||
T Consensus 286 ~VI 288 (812)
T PRK11664 286 LVV 288 (812)
T ss_pred EEE
Confidence 776
No 179
>PRK05580 primosome assembly protein PriA; Validated
Probab=93.71 E-value=1.3 Score=40.21 Aligned_cols=71 Identities=17% Similarity=0.210 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhhhcCCCceEEEEEcCcch-----HHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEEEcc
Q 028826 10 ELSAQIYHVAQPFISTLPDVKSMLLVGGVEV-----KADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDE 84 (203)
Q Consensus 10 eLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~-----~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lViDE 84 (203)
.-+.++.++++++ +|+.++..+.++... ++......++.++|+|||.. +. +.+|+.++.++++-.
T Consensus 437 ~G~e~~~e~l~~~---fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~-----ia--kG~d~p~v~lV~il~ 506 (679)
T PRK05580 437 PGTERLEEELAEL---FPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQM-----LA--KGHDFPNVTLVGVLD 506 (679)
T ss_pred ccHHHHHHHHHHh---CCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChh-----hc--cCCCCCCcCEEEEEc
Confidence 3445556666555 557888888877542 23344555678999999994 32 579999999999999
Q ss_pred hhHhhh
Q 028826 85 ADRLLD 90 (203)
Q Consensus 85 ad~l~~ 90 (203)
+|..+.
T Consensus 507 aD~~l~ 512 (679)
T PRK05580 507 ADLGLF 512 (679)
T ss_pred Cchhcc
Confidence 998764
No 180
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=93.67 E-value=2.4 Score=38.32 Aligned_cols=75 Identities=13% Similarity=0.313 Sum_probs=57.2
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHH---HHHhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~---~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
++|+++|+.-+..+.+.+.+. ++++..++|+.+..+... ....++.+|+|||- .+. .++++.+++
T Consensus 449 viIf~~t~~~ae~L~~~L~~~-----gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~-----~L~--rGfdlp~v~ 516 (652)
T PRK05298 449 VLVTTLTKRMAEDLTDYLKEL-----GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGIN-----LLR--EGLDIPEVS 516 (652)
T ss_pred EEEEeCCHHHHHHHHHHHhhc-----ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeC-----HHh--CCccccCCc
Confidence 789999999998888877664 788999988877554443 33346789999984 333 589999999
Q ss_pred EEEEcchhHh
Q 028826 79 ILVLDEADRL 88 (203)
Q Consensus 79 ~lViDEad~l 88 (203)
++|+=|++..
T Consensus 517 lVii~d~eif 526 (652)
T PRK05298 517 LVAILDADKE 526 (652)
T ss_pred EEEEeCCccc
Confidence 9998777753
No 181
>PRK13767 ATP-dependent helicase; Provisional
Probab=93.58 E-value=0.57 Score=43.76 Aligned_cols=75 Identities=11% Similarity=0.142 Sum_probs=54.5
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhc-CCCceEEEEEcCcchHHHHH---HHHhCCCeEEEeccHHHHHHHHhCCCccCCCc
Q 028826 2 GMIISPTRELSAQIYHVAQPFIST-LPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~-~~~i~~~~~~~g~~~~~~~~---~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v 77 (203)
+||+|+||..|..+...+++.... ..+..+...+|+.+.++... .+.++...+||+|.. +. .++|+.++
T Consensus 287 ~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~-----Le--~GIDip~V 359 (876)
T PRK13767 287 TLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTS-----LE--LGIDIGYI 359 (876)
T ss_pred EEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECCh-----HH--hcCCCCCC
Confidence 799999999999998888775331 12467888999988665443 445577899999973 22 46777778
Q ss_pred cEEEEc
Q 028826 78 VILVLD 83 (203)
Q Consensus 78 ~~lViD 83 (203)
+++|.-
T Consensus 360 d~VI~~ 365 (876)
T PRK13767 360 DLVVLL 365 (876)
T ss_pred cEEEEe
Confidence 877753
No 182
>COG4889 Predicted helicase [General function prediction only]
Probab=93.48 E-value=0.4 Score=44.24 Aligned_cols=85 Identities=18% Similarity=0.226 Sum_probs=59.4
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHH------------------------HHHhCCCeEEEe
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK------------------------KIEEEGANLLIG 57 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~------------------------~l~~~~~~ilV~ 57 (203)
.|+|+|+-.|..|..++...=. .+ .++...++++....+..+ .-...+--|+++
T Consensus 209 iL~LvPSIsLLsQTlrew~~~~-~l-~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFs 286 (1518)
T COG4889 209 ILFLVPSISLLSQTLREWTAQK-EL-DFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFS 286 (1518)
T ss_pred eEeecchHHHHHHHHHHHhhcc-Cc-cceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEE
Confidence 5899999999999988887642 33 677777777543321111 111245678888
Q ss_pred ccHHHHHHHHhCCCccCCCccEEEEcchhHhh
Q 028826 58 TPGRLYDIMERMDVLDFRNLVILVLDEADRLL 89 (203)
Q Consensus 58 Tp~~l~~~~~~~~~~~l~~v~~lViDEad~l~ 89 (203)
|-..+...-.. ...-+..++++|-||||+..
T Consensus 287 TYQSl~~i~eA-Qe~G~~~fDliicDEAHRTt 317 (1518)
T COG4889 287 TYQSLPRIKEA-QEAGLDEFDLIICDEAHRTT 317 (1518)
T ss_pred cccchHHHHHH-HHcCCCCccEEEecchhccc
Confidence 88887765554 55567889999999999974
No 183
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=93.31 E-value=0.15 Score=47.38 Aligned_cols=83 Identities=12% Similarity=0.194 Sum_probs=61.4
Q ss_pred EEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHH-HHHHhC-----CCccCCC
Q 028826 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLY-DIMERM-----DVLDFRN 76 (203)
Q Consensus 3 lil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~-~~~~~~-----~~~~l~~ 76 (203)
=||+.+--||..=.+++..+..++ |+.|+++..+.+..+... .-.+||..||..-+- ++++.+ ...-...
T Consensus 183 HvVTvNDYLA~RDaewm~p~y~fl-GLtVg~i~~~~~~~~Rr~---aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~ 258 (1025)
T PRK12900 183 HVVTVNDYLAQRDKEWMNPVFEFH-GLSVGVILNTMRPEERRE---QYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRD 258 (1025)
T ss_pred EEEeechHhhhhhHHHHHHHHHHh-CCeeeeeCCCCCHHHHHH---hCCCcceecCCCccccccchhccccchhhhhccC
Confidence 366777788888888888888888 999999977766554443 357999999998874 555541 0111357
Q ss_pred ccEEEEcchhHhh
Q 028826 77 LVILVLDEADRLL 89 (203)
Q Consensus 77 v~~lViDEad~l~ 89 (203)
..+.||||+|.++
T Consensus 259 ~~faIVDEvDSvL 271 (1025)
T PRK12900 259 FYFAIVDEVDSVL 271 (1025)
T ss_pred CceEEEechhhhh
Confidence 8899999999975
No 184
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=93.28 E-value=0.54 Score=43.50 Aligned_cols=72 Identities=14% Similarity=0.206 Sum_probs=55.8
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHh---CCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEE---EGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~---~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+||++|+++-+.++++.+++... +++.+..++|+.+..++.+.+.. +...|||+|. .. . .++++.+|+
T Consensus 212 iLVFlpg~~eI~~l~~~L~~~~~--~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATn-----IA-E-rgItIp~V~ 282 (819)
T TIGR01970 212 ILVFLPGQAEIRRVQEQLAERLD--SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATN-----IA-E-TSLTIEGIR 282 (819)
T ss_pred EEEEECCHHHHHHHHHHHHhhcC--CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecc-----hH-h-hcccccCce
Confidence 69999999999888888876322 27899999999998887776643 3468999997 22 3 688999998
Q ss_pred EEEE
Q 028826 79 ILVL 82 (203)
Q Consensus 79 ~lVi 82 (203)
++|=
T Consensus 283 ~VID 286 (819)
T TIGR01970 283 VVID 286 (819)
T ss_pred EEEE
Confidence 7763
No 185
>PRK05642 DNA replication initiation factor; Validated
Probab=93.17 E-value=1.1 Score=35.04 Aligned_cols=89 Identities=16% Similarity=0.192 Sum_probs=52.6
Q ss_pred eEEEEEcCc--chHHHHHHH----HhCCCeEEEeccHHHHHHHHhCCCccCCCccEEEEcchhHhhh-hchHHHHHHHHH
Q 028826 30 KSMLLVGGV--EVKADVKKI----EEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLD-MGFQKQISYIIS 102 (203)
Q Consensus 30 ~~~~~~~g~--~~~~~~~~l----~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lViDEad~l~~-~~~~~~~~~il~ 102 (203)
+...++|.. ...+-...+ ...+..+++.+.+.+...... -.-.+.+.+++++|++|.+-. ....+.+.+++.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~-~~~~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n 124 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPE-LLDNLEQYELVCLDDLDVIAGKADWEEALFHLFN 124 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhhHH-HHHhhhhCCEEEEechhhhcCChHHHHHHHHHHH
Confidence 456677643 344443332 234678899888887643221 011255678999999997743 234566778887
Q ss_pred hCCCCCcEEEEeeecCh
Q 028826 103 RLPKLRRTGLFSATQTE 119 (203)
Q Consensus 103 ~~~~~~q~i~~SAT~~~ 119 (203)
.+..+...++++++.++
T Consensus 125 ~~~~~g~~ilits~~~p 141 (234)
T PRK05642 125 RLRDSGRRLLLAASKSP 141 (234)
T ss_pred HHHhcCCEEEEeCCCCH
Confidence 76544344555555544
No 186
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.12 E-value=0.49 Score=41.13 Aligned_cols=69 Identities=12% Similarity=0.109 Sum_probs=55.8
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHH---hCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIE---EEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~---~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+||.|-|+.-|.++.+.++.. +.++.+++|+.+..+....|. ++.+.|||+|--. . +.+|+.+|+
T Consensus 344 vIIFc~tkr~~~~l~~~l~~~-----~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVA------a-RGLDi~dV~ 411 (519)
T KOG0331|consen 344 VIIFCETKRTCDELARNLRRK-----GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVA------A-RGLDVPDVD 411 (519)
T ss_pred EEEEecchhhHHHHHHHHHhc-----CcceeeecccccHHHHHHHHHhcccCCcceEEEcccc------c-ccCCCcccc
Confidence 789999999888887777664 578999999999887777664 4678999999622 2 689999999
Q ss_pred EEEE
Q 028826 79 ILVL 82 (203)
Q Consensus 79 ~lVi 82 (203)
++|-
T Consensus 412 lVIn 415 (519)
T KOG0331|consen 412 LVIN 415 (519)
T ss_pred EEEe
Confidence 9984
No 187
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=92.84 E-value=1.3 Score=30.21 Aligned_cols=73 Identities=14% Similarity=0.231 Sum_probs=52.9
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHH---HHHhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~---~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
.||++++++-+.++.+.+.+. +..+..++|+.+..+... ...++...|+++|.. +. .++++..++
T Consensus 31 ~lvf~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~-----~~--~G~d~~~~~ 98 (131)
T cd00079 31 VLIFCPSKKMLDELAELLRKP-----GIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDV-----IA--RGIDLPNVS 98 (131)
T ss_pred EEEEeCcHHHHHHHHHHHHhc-----CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcCh-----hh--cCcChhhCC
Confidence 589999999998888888772 677888998876444333 233456689999863 22 578888888
Q ss_pred EEEEcchh
Q 028826 79 ILVLDEAD 86 (203)
Q Consensus 79 ~lViDEad 86 (203)
.+|+.+.+
T Consensus 99 ~vi~~~~~ 106 (131)
T cd00079 99 VVINYDLP 106 (131)
T ss_pred EEEEeCCC
Confidence 88876663
No 188
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=92.74 E-value=0.54 Score=38.97 Aligned_cols=100 Identities=18% Similarity=0.189 Sum_probs=52.6
Q ss_pred CceEEEEEcCcchHHHHHHHHhCCC-----eEEEeccHHHHHHHHhCCCccCCCccEEEEcchhHhhhhc-------hHH
Q 028826 28 DVKSMLLVGGVEVKADVKKIEEEGA-----NLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMG-------FQK 95 (203)
Q Consensus 28 ~i~~~~~~~g~~~~~~~~~l~~~~~-----~ilV~Tp~~l~~~~~~~~~~~l~~v~~lViDEad~l~~~~-------~~~ 95 (203)
+-++..++++............... ...+..|..+...... ......+.+++||||||+|.+.+ ...
T Consensus 31 ~~~~~~l~~n~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~ 109 (352)
T PF09848_consen 31 GKKVLYLCGNHPLRNKLREQLAKKYNPKLKKSDFRKPTSFINNYSE-SDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPN 109 (352)
T ss_pred CCceEEEEecchHHHHHHHHHhhhcccchhhhhhhhhHHHHhhccc-ccccCCcCCEEEEehhHhhhhccccccccccHH
Confidence 4566666666665544433222221 3344445444433331 22446788999999999998732 235
Q ss_pred HHHHHHHhCC------CCCcEEEEeeecChh-HHHHHHhc
Q 028826 96 QISYIISRLP------KLRRTGLFSATQTEA-VEELSKAG 128 (203)
Q Consensus 96 ~~~~il~~~~------~~~q~i~~SAT~~~~-v~~~~~~~ 128 (203)
.+..++..-. ...|.+-.+.....+ +..++..+
T Consensus 110 ~L~~i~~~~kv~v~f~D~~Q~i~~~e~~~~~~l~~~~~~~ 149 (352)
T PF09848_consen 110 QLDEIIKRAKVVVFFYDENQSIRPSEIGTLENLEEIAENL 149 (352)
T ss_pred HHHHHHhcCCEEEEEEccccEeecccCCCHHHHHHHHHhc
Confidence 5666666521 133555555544433 44444433
No 189
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=92.72 E-value=0.57 Score=43.23 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=66.5
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCce-EEEEEcCcch----HHHHHHHHhCC----CeEEEeccHHHHHHHHhCCCc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVK-SMLLVGGVEV----KADVKKIEEEG----ANLLIGTPGRLYDIMERMDVL 72 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~-~~~~~~g~~~----~~~~~~l~~~~----~~ilV~Tp~~l~~~~~~~~~~ 72 (203)
++|++|+. +..++.+++.++.+. ++ +....|.... .+....+.... .+++++|-+.+.........+
T Consensus 393 ~liv~p~s-~~~nw~~e~~k~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l 468 (866)
T COG0553 393 ALIVVPAS-LLSNWKREFEKFAPD---LRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGL 468 (866)
T ss_pred eEEEecHH-HHHHHHHHHhhhCcc---ccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHH
Confidence 57888876 566777777777554 44 6666665541 33333333322 799999999988732111334
Q ss_pred cCCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeec-ChhHHH
Q 028826 73 DFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ-TEAVEE 123 (203)
Q Consensus 73 ~l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~-~~~v~~ 123 (203)
.-.....+|+||+|.+-.. -......+. .+..... +++|.|. .+.+.+
T Consensus 469 ~~~~~~~~v~DEa~~ikn~-~s~~~~~l~-~~~~~~~-~~LtgTPlen~l~e 517 (866)
T COG0553 469 KKIEWDRVVLDEAHRIKND-QSSEGKALQ-FLKALNR-LDLTGTPLENRLGE 517 (866)
T ss_pred hhceeeeeehhhHHHHhhh-hhHHHHHHH-HHhhcce-eeCCCChHhhhHHH
Confidence 5566789999999996332 222222333 4433334 4455554 444444
No 190
>PHA02653 RNA helicase NPH-II; Provisional
Probab=92.71 E-value=0.54 Score=42.52 Aligned_cols=70 Identities=14% Similarity=0.297 Sum_probs=52.2
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHH-HHHH-HhCCCeEEEeccHHHHHHHHhCCCccCCCccE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKAD-VKKI-EEEGANLLIGTPGRLYDIMERMDVLDFRNLVI 79 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~-~~~l-~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~ 79 (203)
+||.+|+++-+..+.+.+++.. +++++..++|+.+..++ .+.. .++...|||+|. .. . +++++.++.+
T Consensus 398 iLVFlpg~~ei~~l~~~L~~~~---~~~~v~~LHG~Lsq~eq~l~~ff~~gk~kILVATd-----IA-E-RGIDIp~V~~ 467 (675)
T PHA02653 398 GIVFVASVSQCEEYKKYLEKRL---PIYDFYIIHGKVPNIDEILEKVYSSKNPSIIISTP-----YL-E-SSVTIRNATH 467 (675)
T ss_pred EEEEECcHHHHHHHHHHHHhhc---CCceEEeccCCcCHHHHHHHHHhccCceeEEeccC-----hh-h-ccccccCeeE
Confidence 6999999998877777666542 36889999999876533 2444 245689999998 22 3 6899999988
Q ss_pred EE
Q 028826 80 LV 81 (203)
Q Consensus 80 lV 81 (203)
+|
T Consensus 468 VI 469 (675)
T PHA02653 468 VY 469 (675)
T ss_pred EE
Confidence 76
No 191
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=92.30 E-value=0.87 Score=36.61 Aligned_cols=69 Identities=14% Similarity=0.171 Sum_probs=52.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhCCCccCCCc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v 77 (203)
||+|+|.||.-+.-+.+.++.- +..+.+.+|+...++....+ ..+...|+|+|--+ . +.+|...+
T Consensus 268 QavIFcnTk~kVdwLtekm~~~-----nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVw------a-RGiDv~qV 335 (400)
T KOG0328|consen 268 QAVIFCNTKRKVDWLTEKMREA-----NFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVW------A-RGIDVQQV 335 (400)
T ss_pred eEEEEecccchhhHHHHHHHhh-----CceeeeccCCcchhHHHHHHHHhhcCCceEEEEechh------h-ccCCccee
Confidence 6899999998776555555543 78899999998877766644 24678999998632 2 67899999
Q ss_pred cEEE
Q 028826 78 VILV 81 (203)
Q Consensus 78 ~~lV 81 (203)
+++|
T Consensus 336 slvi 339 (400)
T KOG0328|consen 336 SLVI 339 (400)
T ss_pred EEEE
Confidence 9887
No 192
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=92.19 E-value=2.6 Score=36.27 Aligned_cols=121 Identities=12% Similarity=0.170 Sum_probs=65.6
Q ss_pred EEcCcHHHHHHHHHHHHH-hhhcC-CCceEEEEEcCcc--hHHHHHHH----HhCCCeEEEeccHHHHHHHHh---CCCc
Q 028826 4 IISPTRELSAQIYHVAQP-FISTL-PDVKSMLLVGGVE--VKADVKKI----EEEGANLLIGTPGRLYDIMER---MDVL 72 (203)
Q Consensus 4 il~PtreLa~Qi~~~~~~-l~~~~-~~i~~~~~~~g~~--~~~~~~~l----~~~~~~ilV~Tp~~l~~~~~~---~~~~ 72 (203)
|+.|.-++|......+.+ ..... ...+...++|+.. ..+-...+ ...+..++..+.+.+...+.. .+..
T Consensus 114 v~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~ 193 (445)
T PRK12422 114 LVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEM 193 (445)
T ss_pred eeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchH
Confidence 345666666444333322 21110 1245677887543 33333322 234688999998876543321 0111
Q ss_pred -----cCCCccEEEEcchhHhhhhc-hHHHHHHHHHhC-CCCCcEEEEeeecChhHHHH
Q 028826 73 -----DFRNLVILVLDEADRLLDMG-FQKQISYIISRL-PKLRRTGLFSATQTEAVEEL 124 (203)
Q Consensus 73 -----~l~~v~~lViDEad~l~~~~-~~~~~~~il~~~-~~~~q~i~~SAT~~~~v~~~ 124 (203)
...+.+++++||+|.+-... ..+.+..++..+ ....|+++.|.+.|..+..+
T Consensus 194 ~~f~~~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l 252 (445)
T PRK12422 194 QRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAM 252 (445)
T ss_pred HHHHHHcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhh
Confidence 14678899999999875432 344555555443 24567777766666655443
No 193
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.92 E-value=3.1 Score=36.46 Aligned_cols=68 Identities=19% Similarity=0.256 Sum_probs=49.1
Q ss_pred HHHHHHHHHhhhcCCCceEEEEEcCcch-----HHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEEEcchhH
Q 028826 13 AQIYHVAQPFISTLPDVKSMLLVGGVEV-----KADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADR 87 (203)
Q Consensus 13 ~Qi~~~~~~l~~~~~~i~~~~~~~g~~~-----~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lViDEad~ 87 (203)
.++.+++.++ +|+.++..+.++... ++....+.++.++|+|||+. +. +.+++.++.++++=.+|.
T Consensus 272 e~~~e~l~~~---fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~-----i~--kG~d~~~v~lV~vl~aD~ 341 (505)
T TIGR00595 272 EQVEEELAKL---FPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQM-----IA--KGHHFPNVTLVGVLDADS 341 (505)
T ss_pred HHHHHHHHhh---CCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcc-----cc--cCCCCCcccEEEEEcCcc
Confidence 4555555554 567888888887643 23344555678999999994 32 578999999999999998
Q ss_pred hhh
Q 028826 88 LLD 90 (203)
Q Consensus 88 l~~ 90 (203)
.+.
T Consensus 342 ~l~ 344 (505)
T TIGR00595 342 GLH 344 (505)
T ss_pred ccc
Confidence 663
No 194
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=91.90 E-value=0.23 Score=38.12 Aligned_cols=41 Identities=24% Similarity=0.320 Sum_probs=33.6
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEee
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SA 115 (203)
...-++++||+|.=+|......+..++..+++..|+++.|.
T Consensus 157 ~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th 197 (220)
T PF02463_consen 157 KPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTH 197 (220)
T ss_dssp S--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S
T ss_pred ccccccccccccccccccccccccccccccccccccccccc
Confidence 45679999999999999999999999999988999998864
No 195
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=91.78 E-value=0.22 Score=46.18 Aligned_cols=106 Identities=17% Similarity=0.249 Sum_probs=59.8
Q ss_pred EEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHH-HHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADV-KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 3 lil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~-~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
||+||+--|.+ +..++.+. .|.+..+...|........ .++..+..+|+++|-+.+.. .. ..+.--+-.++|
T Consensus 448 LvivPlstL~N-W~~Ef~kW---aPSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk-~lLsKI~W~yMI 520 (1157)
T KOG0386|consen 448 LIIVPLSTLVN-WSSEFPKW---APSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DK-ALLSKISWKYMI 520 (1157)
T ss_pred EEeccccccCC-chhhcccc---ccceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CH-HHHhccCCccee
Confidence 78999888774 23444444 3467766666654432222 23445789999999988764 11 112222345899
Q ss_pred EcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeec
Q 028826 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117 (203)
Q Consensus 82 iDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~ 117 (203)
|||-|+|= .....+...+.-.......++++.|-
T Consensus 521 IDEGHRmK--Na~~KLt~~L~t~y~~q~RLLLTGTP 554 (1157)
T KOG0386|consen 521 IDEGHRMK--NAICKLTDTLNTHYRAQRRLLLTGTP 554 (1157)
T ss_pred eccccccc--chhhHHHHHhhccccchhhhhhcCCh
Confidence 99999982 23334444444222333345555553
No 196
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=91.68 E-value=1.9 Score=33.28 Aligned_cols=116 Identities=13% Similarity=0.140 Sum_probs=66.3
Q ss_pred EEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcc--hHHHHHHHH------hCCCeEEEeccHHHHHHHHh---CCCc
Q 028826 4 IISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVE--VKADVKKIE------EEGANLLIGTPGRLYDIMER---MDVL 72 (203)
Q Consensus 4 il~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~--~~~~~~~l~------~~~~~ilV~Tp~~l~~~~~~---~~~~ 72 (203)
|..+..++|....+.+..-. .. ......++|+.. ..+-...+. ..+..|+..+.+.+...+.. .+.+
T Consensus 11 v~g~~N~~a~~~~~~ia~~~-~~-~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~ 88 (219)
T PF00308_consen 11 VVGESNELAYAAAKAIAENP-GE-RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEI 88 (219)
T ss_dssp --TTTTHHHHHHHHHHHHST-TT-SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSH
T ss_pred CcCCcHHHHHHHHHHHHhcC-CC-CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccc
Confidence 34555666665544443321 11 345677887653 444333321 13678999998887654321 0222
Q ss_pred -----cCCCccEEEEcchhHhhhh-chHHHHHHHHHhCC-CCCcEEEEeeecChhH
Q 028826 73 -----DFRNLVILVLDEADRLLDM-GFQKQISYIISRLP-KLRRTGLFSATQTEAV 121 (203)
Q Consensus 73 -----~l~~v~~lViDEad~l~~~-~~~~~~~~il~~~~-~~~q~i~~SAT~~~~v 121 (203)
.+.+.+++++|++|.+-.. ...+.+.+++..+. ...|+++.|...|.++
T Consensus 89 ~~~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 89 EEFKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp HHHHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred hhhhhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 2678999999999998643 24566666666663 4567777776776654
No 197
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=91.67 E-value=0.97 Score=43.08 Aligned_cols=69 Identities=13% Similarity=0.179 Sum_probs=51.0
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+||.|.||.-+.++...+.+. ++++..++||.+..+....+ ..+..+|||+|-. +. .++|..+|+
T Consensus 683 gIIYC~SRke~E~LAe~L~~~-----Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdA-----FG--MGIDkPDVR 750 (1195)
T PLN03137 683 GIIYCLSRMDCEKVAERLQEF-----GHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVA-----FG--MGINKPDVR 750 (1195)
T ss_pred ceeEeCchhHHHHHHHHHHHC-----CCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEech-----hh--cCCCccCCc
Confidence 589999999888887777654 78999999998876655433 2467899999952 22 467777777
Q ss_pred EEEE
Q 028826 79 ILVL 82 (203)
Q Consensus 79 ~lVi 82 (203)
++|-
T Consensus 751 ~VIH 754 (1195)
T PLN03137 751 FVIH 754 (1195)
T ss_pred EEEE
Confidence 7763
No 198
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=91.59 E-value=1.1 Score=41.01 Aligned_cols=77 Identities=10% Similarity=0.085 Sum_probs=55.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcC---CCceEEEEEcCcchHHHHH---HHHhCCCeEEEeccHHHHHHHHhCCCccC
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTL---PDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDF 74 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~---~~i~~~~~~~g~~~~~~~~---~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l 74 (203)
.+||.++||..+..+...+++..... .+.++..++||...++..+ .+.++..++||+|.. +. ..+|+
T Consensus 273 ~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~-----le--rGIDI 345 (742)
T TIGR03817 273 RTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNA-----LE--LGVDI 345 (742)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECch-----Hh--ccCCc
Confidence 47999999999999998887753221 1467888899988665544 344577899999962 22 46788
Q ss_pred CCccEEEEcc
Q 028826 75 RNLVILVLDE 84 (203)
Q Consensus 75 ~~v~~lViDE 84 (203)
.+++.+|.-+
T Consensus 346 ~~vd~VI~~~ 355 (742)
T TIGR03817 346 SGLDAVVIAG 355 (742)
T ss_pred ccccEEEEeC
Confidence 8888777654
No 199
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=91.42 E-value=1.2 Score=41.72 Aligned_cols=114 Identities=18% Similarity=0.203 Sum_probs=61.6
Q ss_pred EEEEcCcHHHHHHHHHHHH-----Hhhh-cCCC--ceEEEEEcCc-------chHHHHHHHHh-C-----CCeEEEeccH
Q 028826 2 GMIISPTRELSAQIYHVAQ-----PFIS-TLPD--VKSMLLVGGV-------EVKADVKKIEE-E-----GANLLIGTPG 60 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~-----~l~~-~~~~--i~~~~~~~g~-------~~~~~~~~l~~-~-----~~~ilV~Tp~ 60 (203)
.||+||+.+.-..+...+. .... .+.+ ++...+.++. ......+.-.. . ..+|+|.|-+
T Consensus 92 fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niq 171 (986)
T PRK15483 92 FIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAG 171 (986)
T ss_pred EEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccccccccChHHHHHHHhccccCCCceEEEEEehH
Confidence 5899999888777766554 1111 1222 4444444432 11333332222 2 5899999999
Q ss_pred HHHHH-H-HhC-------CC-cc---CCCcc-EEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecCh
Q 028826 61 RLYDI-M-ERM-------DV-LD---FRNLV-ILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (203)
Q Consensus 61 ~l~~~-~-~~~-------~~-~~---l~~v~-~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~ 119 (203)
.+..- . ... +. .. +...+ ++|+||.|++-..+ .....| ..+.+.. ++.||||.+.
T Consensus 172 a~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~~--k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 172 MLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRDN--KFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred HhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcch--HHHHHH-HhcCccc-EEEEeeecCC
Confidence 88641 1 110 01 11 22222 78999999984422 122333 4443222 4669999987
No 200
>PRK09694 helicase Cas3; Provisional
Probab=91.25 E-value=1.4 Score=41.16 Aligned_cols=74 Identities=15% Similarity=0.258 Sum_probs=50.1
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHH---HH----H-HhCC---CeEEEeccHHHHHHHHhCC
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADV---KK----I-EEEG---ANLLIGTPGRLYDIMERMD 70 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~---~~----l-~~~~---~~ilV~Tp~~l~~~~~~~~ 70 (203)
+||+++|.+-|.++++.+++.... +.++..++|.....+.. +. . .++. ..|||+|. .+. .
T Consensus 563 vLVf~NTV~~Aq~ly~~L~~~~~~--~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQ-----ViE--~ 633 (878)
T PRK09694 563 VCLICNLVDDAQKLYQRLKELNNT--QVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQ-----VVE--Q 633 (878)
T ss_pred EEEEECCHHHHHHHHHHHHhhCCC--CceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECc-----chh--h
Confidence 689999999999999999875322 46889999986644331 11 1 1122 37999994 232 4
Q ss_pred CccCCCccEEEEcch
Q 028826 71 VLDFRNLVILVLDEA 85 (203)
Q Consensus 71 ~~~l~~v~~lViDEa 85 (203)
++|+ +++++|.|-+
T Consensus 634 GLDI-d~DvlItdla 647 (878)
T PRK09694 634 SLDL-DFDWLITQLC 647 (878)
T ss_pred eeec-CCCeEEECCC
Confidence 6776 4778887753
No 201
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=91.20 E-value=1.7 Score=36.13 Aligned_cols=68 Identities=19% Similarity=0.202 Sum_probs=49.8
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
+||+++|+.-+..++..+++.. . ++.+..++|.....++.+. ...+|+|+|. .+. .++|+..+ .+|
T Consensus 275 ~LIf~nt~~~~~~l~~~L~~~~--~-~~~~~~l~g~~~~~~R~~~---~~~~iLVaTd-----v~~--rGiDi~~~-~vi 340 (357)
T TIGR03158 275 GAIILDSLDEVNRLSDLLQQQG--L-GDDIGRITGFAPKKDRERA---MQFDILLGTS-----TVD--VGVDFKRD-WLI 340 (357)
T ss_pred EEEEECCHHHHHHHHHHHhhhC--C-CceEEeeecCCCHHHHHHh---ccCCEEEEec-----HHh--cccCCCCc-eEE
Confidence 7999999999999999888742 2 4677778887776655433 3689999998 222 57888776 566
Q ss_pred Ec
Q 028826 82 LD 83 (203)
Q Consensus 82 iD 83 (203)
+|
T Consensus 341 ~~ 342 (357)
T TIGR03158 341 FS 342 (357)
T ss_pred EC
Confidence 64
No 202
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.00 E-value=3.5 Score=36.26 Aligned_cols=74 Identities=14% Similarity=0.214 Sum_probs=58.1
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHH---HHhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKK---IEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~---l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
.||.+-+.|-|.|++.++.. ++++++..++|..+..+..+. ...+...++|+|- ++. +++|++++.
T Consensus 390 ~lIfVQs~eRak~L~~~L~~----~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTd-----ll~--RGiDf~gvn 458 (593)
T KOG0344|consen 390 VLIFVQSKERAKQLFEELEI----YDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTD-----LLA--RGIDFKGVN 458 (593)
T ss_pred eEEEEecHHHHHHHHHHhhh----ccCcceeeEecccchhHHHHHHHHHhccCeeEEEehh-----hhh--ccccccCcc
Confidence 57888999999999998872 348999999999765554443 3447789999985 454 469999999
Q ss_pred EEEEcchh
Q 028826 79 ILVLDEAD 86 (203)
Q Consensus 79 ~lViDEad 86 (203)
++|-++.-
T Consensus 459 ~VInyD~p 466 (593)
T KOG0344|consen 459 LVINYDFP 466 (593)
T ss_pred eEEecCCC
Confidence 99997754
No 203
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=90.84 E-value=5.6 Score=32.19 Aligned_cols=41 Identities=17% Similarity=0.136 Sum_probs=29.5
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEee
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SA 115 (203)
..-+++|+||+|.+-.......+..+++..+...++++.+.
T Consensus 99 ~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n 139 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITAN 139 (316)
T ss_pred CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 45789999999988333345667777888777777766554
No 204
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=90.84 E-value=0.25 Score=34.29 Aligned_cols=36 Identities=31% Similarity=0.477 Sum_probs=20.3
Q ss_pred ccEEEEcchhHhhhhchHHHHHHHHHhC-CCCCcEEEEee
Q 028826 77 LVILVLDEADRLLDMGFQKQISYIISRL-PKLRRTGLFSA 115 (203)
Q Consensus 77 v~~lViDEad~l~~~~~~~~~~~il~~~-~~~~q~i~~SA 115 (203)
..++|+||+|.+.+ .+.+..+.... ....++++++.
T Consensus 88 ~~~lviDe~~~l~~---~~~l~~l~~l~~~~~~~vvl~G~ 124 (131)
T PF13401_consen 88 VVLLVIDEADHLFS---DEFLEFLRSLLNESNIKVVLVGT 124 (131)
T ss_dssp EEEEEEETTHHHHT---HHHHHHHHHHTCSCBEEEEEEES
T ss_pred CeEEEEeChHhcCC---HHHHHHHHHHHhCCCCeEEEEEC
Confidence 37999999999642 33333443333 23344555443
No 205
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.83 E-value=1.7 Score=36.36 Aligned_cols=116 Identities=14% Similarity=0.140 Sum_probs=72.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhCCCccCCCc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v 77 (203)
+++|+|-||.-|.-++..+..- |-.|.+++|.....+....+ ..+...|+|+|.-.- +++|...+
T Consensus 332 qsiIFc~tk~ta~~l~~~m~~~-----Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~A-------RGiDv~qV 399 (477)
T KOG0332|consen 332 QSIIFCHTKATAMWLYEEMRAE-----GHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCA-------RGIDVAQV 399 (477)
T ss_pred heEEEEeehhhHHHHHHHHHhc-----CceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhh-------cccccceE
Confidence 5899999999999888888775 67788889887766554433 346789999997332 68999999
Q ss_pred cEEEEcchhHhhhhchHHHHHHHHHhCCC----CCcEEEEe---eecChhHHHHHHhcCC
Q 028826 78 VILVLDEADRLLDMGFQKQISYIISRLPK----LRRTGLFS---ATQTEAVEELSKAGLR 130 (203)
Q Consensus 78 ~~lViDEad~l~~~~~~~~~~~il~~~~~----~~q~i~~S---AT~~~~v~~~~~~~l~ 130 (203)
.++|= -|.-.+.+-.++....+.++.+ .+.-+.++ .-.+.++.+.+.+|+.
T Consensus 400 s~VvN--ydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~ 457 (477)
T KOG0332|consen 400 SVVVN--YDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFN 457 (477)
T ss_pred EEEEe--cCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHh
Confidence 98884 2222222223444444555532 22233333 2233445555555554
No 206
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=90.66 E-value=4.2 Score=31.02 Aligned_cols=103 Identities=10% Similarity=0.110 Sum_probs=50.1
Q ss_pred HHHHHHHHhhhcCCCceEEEEEcCc--chHHHHHHHH----hCCCeEEEeccHHHHHHHHhCCCccCCCccEEEEcchhH
Q 028826 14 QIYHVAQPFISTLPDVKSMLLVGGV--EVKADVKKIE----EEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADR 87 (203)
Q Consensus 14 Qi~~~~~~l~~~~~~i~~~~~~~g~--~~~~~~~~l~----~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lViDEad~ 87 (203)
+....++++...- .-+...++|.. ....-...+. ..+..++..+-..+...... -.-.+.+.+++++||+|.
T Consensus 24 ~~~~~l~~~~~~~-~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~lLvIDdi~~ 101 (226)
T TIGR03420 24 ELLAALRQLAAGK-GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQADPE-VLEGLEQADLVCLDDVEA 101 (226)
T ss_pred HHHHHHHHHHhcC-CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhHHH-HHhhcccCCEEEEeChhh
Confidence 4444555543222 34556666643 3333333322 23456666655554332111 001134567999999998
Q ss_pred hhhh-chHHHHHHHHHhCCCCCcEEEEeeecC
Q 028826 88 LLDM-GFQKQISYIISRLPKLRRTGLFSATQT 118 (203)
Q Consensus 88 l~~~-~~~~~~~~il~~~~~~~q~i~~SAT~~ 118 (203)
+-.. .....+..++.........+++|++.+
T Consensus 102 l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~ 133 (226)
T TIGR03420 102 IAGQPEWQEALFHLYNRVREAGGRLLIAGRAA 133 (226)
T ss_pred hcCChHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 7532 225556666655432222455555544
No 207
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=90.46 E-value=0.75 Score=41.09 Aligned_cols=81 Identities=21% Similarity=0.328 Sum_probs=58.7
Q ss_pred CEEEEcCcHHHH-----HHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhCCCc
Q 028826 1 MGMIISPTRELS-----AQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVL 72 (203)
Q Consensus 1 ~alil~PtreLa-----~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~~~~ 72 (203)
||.+|||--|-. .-....+..+...+++.++..++|-.+..+....+ .++..||+|+|.- + + =.+
T Consensus 475 QaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTV-----I-E-VGV 547 (677)
T COG1200 475 QAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTV-----I-E-VGV 547 (677)
T ss_pred EEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeE-----E-E-ecc
Confidence 577888874433 23345555565667789999999988766554433 3468999999972 2 2 468
Q ss_pred cCCCccEEEEcchhHh
Q 028826 73 DFRNLVILVLDEADRL 88 (203)
Q Consensus 73 ~l~~v~~lViDEad~l 88 (203)
|+-+-.+.||..|+++
T Consensus 548 dVPnATvMVIe~AERF 563 (677)
T COG1200 548 DVPNATVMVIENAERF 563 (677)
T ss_pred cCCCCeEEEEechhhh
Confidence 8999999999999987
No 208
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.41 E-value=6.3 Score=35.79 Aligned_cols=77 Identities=17% Similarity=0.179 Sum_probs=47.6
Q ss_pred CCeEEEeccHHHHH-HHHhCCCccCCCccEEEEcchhHhh-hhc-hHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHh
Q 028826 51 GANLLIGTPGRLYD-IMERMDVLDFRNLVILVLDEADRLL-DMG-FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (203)
Q Consensus 51 ~~~ilV~Tp~~l~~-~~~~~~~~~l~~v~~lViDEad~l~-~~~-~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~ 127 (203)
...|=..|-+.|+. .+.. -+|.+-+.+|+||||.=. ..+ ....++.+++.- .+..+|+.|||+.. ..|.+.
T Consensus 445 ~T~IkymTDGiLLrEsL~d---~~L~kYSviImDEAHERslNtDilfGllk~~larR-rdlKliVtSATm~a--~kf~nf 518 (1042)
T KOG0924|consen 445 DTKIKYMTDGILLRESLKD---RDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARR-RDLKLIVTSATMDA--QKFSNF 518 (1042)
T ss_pred ceeEEEeccchHHHHHhhh---hhhhheeEEEechhhhcccchHHHHHHHHHHHHhh-ccceEEEeeccccH--HHHHHH
Confidence 34577889988875 3332 356788899999999631 111 122233333332 47789999999974 566665
Q ss_pred cCCCCe
Q 028826 128 GLRNPV 133 (203)
Q Consensus 128 ~l~~~~ 133 (203)
|.+-|.
T Consensus 519 Fgn~p~ 524 (1042)
T KOG0924|consen 519 FGNCPQ 524 (1042)
T ss_pred hCCCce
Confidence 544443
No 209
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=90.34 E-value=4.2 Score=37.20 Aligned_cols=98 Identities=15% Similarity=0.251 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhhhcCCCceEEEEEcCcchHH-----HHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEEEcchh
Q 028826 12 SAQIYHVAQPFISTLPDVKSMLLVGGVEVKA-----DVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEAD 86 (203)
Q Consensus 12 a~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~-----~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lViDEad 86 (203)
..++.+++.++ +|+.++..+.++..... ......++..||||||+ |+. +++++.++.++++=.||
T Consensus 493 terieeeL~~~---FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQ-----mia--KG~~fp~vtLVgvl~aD 562 (730)
T COG1198 493 TERIEEELKRL---FPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQ-----MIA--KGHDFPNVTLVGVLDAD 562 (730)
T ss_pred HHHHHHHHHHH---CCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecch-----hhh--cCCCcccceEEEEEech
Confidence 34566666666 56788888888765432 23345568899999998 443 57999999999999999
Q ss_pred Hhhhh-chH--HHHHHHHHhC----C---CCCcEEEEeeecCh
Q 028826 87 RLLDM-GFQ--KQISYIISRL----P---KLRRTGLFSATQTE 119 (203)
Q Consensus 87 ~l~~~-~~~--~~~~~il~~~----~---~~~q~i~~SAT~~~ 119 (203)
.++.. +|+ +....++.+. . ...++++=|+....
T Consensus 563 ~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~h 605 (730)
T COG1198 563 TGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDH 605 (730)
T ss_pred hhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCc
Confidence 98743 233 2333333333 2 23366666666543
No 210
>PRK14701 reverse gyrase; Provisional
Probab=90.32 E-value=0.73 Score=45.75 Aligned_cols=69 Identities=26% Similarity=0.313 Sum_probs=47.9
Q ss_pred CEEEEcCcHHHH---HHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEecc---HHHHHHHHhCCCccC
Q 028826 1 MGMIISPTRELS---AQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTP---GRLYDIMERMDVLDF 74 (203)
Q Consensus 1 ~alil~PtreLa---~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp---~~l~~~~~~~~~~~l 74 (203)
.+||.|||++-+ .++.+.+.+ . |+++..++|+. ....+...++..+|+|||. +-+. +++|+
T Consensus 332 ~gIVF~~t~~~~e~ae~la~~L~~---~--Gi~a~~~h~~R--~~~l~~F~~G~~~VLVaT~s~~gvaa------RGIDi 398 (1638)
T PRK14701 332 GGLIFVPIDEGAEKAEEIEKYLLE---D--GFKIELVSAKN--KKGFDLFEEGEIDYLIGVATYYGTLV------RGLDL 398 (1638)
T ss_pred CeEEEEeccccchHHHHHHHHHHH---C--CCeEEEecchH--HHHHHHHHcCCCCEEEEecCCCCeeE------ecCcc
Confidence 368999998754 455554444 2 89999999872 3334455578899999995 2222 57887
Q ss_pred CC-ccEEEE
Q 028826 75 RN-LVILVL 82 (203)
Q Consensus 75 ~~-v~~lVi 82 (203)
.+ |+++|+
T Consensus 399 P~~Vryvi~ 407 (1638)
T PRK14701 399 PERIRFAVF 407 (1638)
T ss_pred CCccCEEEE
Confidence 76 888887
No 211
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=90.13 E-value=1.7 Score=35.87 Aligned_cols=72 Identities=18% Similarity=0.272 Sum_probs=50.9
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHH-------HHHhCCCeEEEeccHHHHHHHHhCCCccC
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK-------KIEEEGANLLIGTPGRLYDIMERMDVLDF 74 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~-------~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l 74 (203)
+||+++|++-|..+++.+++... +.++..++|+....+..+ ...++...|||+|. .+. .++|+
T Consensus 225 ~lVf~~t~~~~~~~~~~L~~~~~---~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~-----~~~--~GiDi 294 (358)
T TIGR01587 225 IAIIVNTVDRAQEFYQQLKENAP---EEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQ-----VIE--ASLDI 294 (358)
T ss_pred EEEEECCHHHHHHHHHHHHhhcC---CCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECc-----chh--ceecc
Confidence 79999999999988888876532 457889999976554432 23346788999997 222 46777
Q ss_pred CCccEEEEcc
Q 028826 75 RNLVILVLDE 84 (203)
Q Consensus 75 ~~v~~lViDE 84 (203)
++.++|.+.
T Consensus 295 -~~~~vi~~~ 303 (358)
T TIGR01587 295 -SADVMITEL 303 (358)
T ss_pred -CCCEEEEcC
Confidence 466766543
No 212
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=90.12 E-value=0.54 Score=44.14 Aligned_cols=83 Identities=17% Similarity=0.148 Sum_probs=59.0
Q ss_pred EEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcC-cchHHHHHHHHhCCCeEEEeccHHHH-HHHHhC-----CCccCC
Q 028826 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGG-VEVKADVKKIEEEGANLLIGTPGRLY-DIMERM-----DVLDFR 75 (203)
Q Consensus 3 lil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g-~~~~~~~~~l~~~~~~ilV~Tp~~l~-~~~~~~-----~~~~l~ 75 (203)
-||+.+--||..=.+++..+-.++ |+.++++... .+..+.. . .-.+||..||..-+- ++++.+ ...-..
T Consensus 214 HvVTVNDYLA~RDaewmgply~fL-GLsvg~i~~~~~~~~~rr-~--aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR 289 (1112)
T PRK12901 214 HVVTVNDYLAKRDSEWMGPLYEFH-GLSVDCIDKHQPNSEARR-K--AYNADITYGTNNEFGFDYLRDNMAHSPEDLVQR 289 (1112)
T ss_pred EEEEechhhhhccHHHHHHHHHHh-CCceeecCCCCCCHHHHH-H--hCCCcceecCCCccccccchhccccchHhhhCc
Confidence 467777788887788888888888 9999988763 3433333 2 357999999998873 555541 111235
Q ss_pred CccEEEEcchhHhh
Q 028826 76 NLVILVLDEADRLL 89 (203)
Q Consensus 76 ~v~~lViDEad~l~ 89 (203)
...+.||||+|.++
T Consensus 290 ~~~fAIVDEvDSIL 303 (1112)
T PRK12901 290 KHNYAIVDEVDSVL 303 (1112)
T ss_pred CCceeEeechhhhh
Confidence 68899999999976
No 213
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=90.00 E-value=3 Score=35.97 Aligned_cols=115 Identities=10% Similarity=0.035 Sum_probs=62.1
Q ss_pred EEcCcHHHHHHHHHHHHHhhhcC-CCceEEEEEcCcc--hHHHHHHHH------hCCCeEEEeccHHHHHHHHh---C--
Q 028826 4 IISPTRELSAQIYHVAQPFISTL-PDVKSMLLVGGVE--VKADVKKIE------EEGANLLIGTPGRLYDIMER---M-- 69 (203)
Q Consensus 4 il~PtreLa~Qi~~~~~~l~~~~-~~i~~~~~~~g~~--~~~~~~~l~------~~~~~ilV~Tp~~l~~~~~~---~-- 69 (203)
|+.|+.++|... ++.++... ...+...++|+.. ..+-...+. ..+..++..|++.+...+.. .
T Consensus 118 v~g~~n~~A~~a---a~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~ 194 (450)
T PRK14087 118 VIGSSNEQAFIA---VQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTH 194 (450)
T ss_pred cCCCcHHHHHHH---HHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhh
Confidence 344555555433 33333321 1235567777543 333333321 23578889998887654432 0
Q ss_pred CCc-----cCCCccEEEEcchhHhhh-hchHHHHHHHHHhCC-CCCcEEEEeeecChhH
Q 028826 70 DVL-----DFRNLVILVLDEADRLLD-MGFQKQISYIISRLP-KLRRTGLFSATQTEAV 121 (203)
Q Consensus 70 ~~~-----~l~~v~~lViDEad~l~~-~~~~~~~~~il~~~~-~~~q~i~~SAT~~~~v 121 (203)
+.+ ...++++|++||+|.+-. ....+.+..++..+. ...|+++.|-..|...
T Consensus 195 ~~~~~~~~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 195 KEIEQFKNEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred hHHHHHHHHhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 011 146788999999997743 224556666666653 3446666655544433
No 214
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=89.67 E-value=7.7 Score=29.77 Aligned_cols=85 Identities=13% Similarity=0.083 Sum_probs=48.9
Q ss_pred ceEEEEEcCc--chHHHHHHH----HhCCCeEEEeccHHHHHHHHhCCCccCCCccEEEEcchhHhhhhchHHHHHHHHH
Q 028826 29 VKSMLLVGGV--EVKADVKKI----EEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIIS 102 (203)
Q Consensus 29 i~~~~~~~g~--~~~~~~~~l----~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lViDEad~l~~~~~~~~~~~il~ 102 (203)
-+...++|.. .+..-...+ ...+..+++.+...+...+.. ..+.+++++||+|.+-. .....+..++.
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~liiDdi~~l~~-~~~~~L~~~~~ 115 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLAFDF-----DPEAELYAVDDVERLDD-AQQIALFNLFN 115 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHHHhh-----cccCCEEEEeChhhcCc-hHHHHHHHHHH
Confidence 4556677643 333333322 234567788777766543321 23567899999998743 33455666665
Q ss_pred hCCCCCc-EEEEeeecCh
Q 028826 103 RLPKLRR-TGLFSATQTE 119 (203)
Q Consensus 103 ~~~~~~q-~i~~SAT~~~ 119 (203)
....... +++++++.++
T Consensus 116 ~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 116 RVRAHGQGALLVAGPAAP 133 (227)
T ss_pred HHHHcCCcEEEEeCCCCH
Confidence 5543443 4677777654
No 215
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=89.27 E-value=7.3 Score=33.49 Aligned_cols=120 Identities=13% Similarity=0.267 Sum_probs=62.3
Q ss_pred EEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcc--hHHHHHHHH----h--CCCeEEEeccHHHHHHHHh-C--CCc
Q 028826 4 IISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVE--VKADVKKIE----E--EGANLLIGTPGRLYDIMER-M--DVL 72 (203)
Q Consensus 4 il~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~--~~~~~~~l~----~--~~~~ilV~Tp~~l~~~~~~-~--~~~ 72 (203)
|+.|..++|... +.+++......+...++|+.. ..+-...+. . .+..+++.|.+.+..-+.. . +..
T Consensus 108 v~g~~n~~a~~~---~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~ 184 (440)
T PRK14088 108 VVGPGNSFAYHA---ALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKL 184 (440)
T ss_pred ccCCchHHHHHH---HHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccH
Confidence 345666665433 333333221245677887543 333333221 1 2457898888876543321 0 111
Q ss_pred -c----C-CCccEEEEcchhHhhhhc-hHHHHHHHHHhCC-CCCcEEEEeeecChhHHHHHH
Q 028826 73 -D----F-RNLVILVLDEADRLLDMG-FQKQISYIISRLP-KLRRTGLFSATQTEAVEELSK 126 (203)
Q Consensus 73 -~----l-~~v~~lViDEad~l~~~~-~~~~~~~il~~~~-~~~q~i~~SAT~~~~v~~~~~ 126 (203)
. . .+.+++++||+|.+.+.. ....+..++..+. ...|+++.|..-|..+..+..
T Consensus 185 ~~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~ 246 (440)
T PRK14088 185 NEFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQD 246 (440)
T ss_pred HHHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHH
Confidence 0 1 257899999999886432 3345555555443 345666655555555444433
No 216
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=88.91 E-value=0.28 Score=36.26 Aligned_cols=41 Identities=29% Similarity=0.400 Sum_probs=25.7
Q ss_pred CCCeEEEeccHHHHHHHHh--CCCccCCCccEEEEcchhHhhhh
Q 028826 50 EGANLLIGTPGRLYDIMER--MDVLDFRNLVILVLDEADRLLDM 91 (203)
Q Consensus 50 ~~~~ilV~Tp~~l~~~~~~--~~~~~l~~v~~lViDEad~l~~~ 91 (203)
..+||||++-.-|.+-... ...+++. -.++||||||.+.+.
T Consensus 118 ~~adivi~~y~yl~~~~~~~~~~~~~~~-~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 118 KNADIVICNYNYLFDPSIRKSLFGIDLK-DNIVIFDEAHNLEDA 160 (174)
T ss_dssp GG-SEEEEETHHHHSHHHHHHHCT--CC-CEEEEETTGGGCGGG
T ss_pred ccCCEEEeCHHHHhhHHHHhhhcccccc-CcEEEEecccchHHH
Confidence 4589999998877653322 0113333 369999999998653
No 217
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=88.85 E-value=0.58 Score=37.90 Aligned_cols=40 Identities=18% Similarity=0.161 Sum_probs=28.3
Q ss_pred CCCccEEEEcchhHhhhhc--hHHHHHHHHHhCCCCCcEEEE
Q 028826 74 FRNLVILVLDEADRLLDMG--FQKQISYIISRLPKLRRTGLF 113 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~--~~~~~~~il~~~~~~~q~i~~ 113 (203)
--+++++||||+|.++... -.......++.+.+.-++-++
T Consensus 143 ~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV 184 (302)
T PF05621_consen 143 RLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIV 184 (302)
T ss_pred HcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeE
Confidence 3579999999999998665 344555667777766665333
No 218
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=88.78 E-value=1.2 Score=36.14 Aligned_cols=55 Identities=15% Similarity=0.142 Sum_probs=38.6
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecC---hhHHHHHHhcC
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT---EAVEELSKAGL 129 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~---~~v~~~~~~~l 129 (203)
....+.+|+||+|.|.+. -...+++.++..++...+++...-++ ..+.....+|.
T Consensus 127 ~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~Kfr 184 (346)
T KOG0989|consen 127 CPPFKIIILDECDSMTSD-AQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFR 184 (346)
T ss_pred CCcceEEEEechhhhhHH-HHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhc
Confidence 455699999999999654 46778888888888888888766643 33443444443
No 219
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=88.75 E-value=1.1 Score=41.16 Aligned_cols=129 Identities=19% Similarity=0.249 Sum_probs=70.8
Q ss_pred CCCeEEEeccHHHHHHHHhCCCccCCCccEEEEcchhHhh-h----hchHHHHHHHHHhCCC------CCcEEEEeeecC
Q 028826 50 EGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLL-D----MGFQKQISYIISRLPK------LRRTGLFSATQT 118 (203)
Q Consensus 50 ~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lViDEad~l~-~----~~~~~~~~~il~~~~~------~~q~i~~SAT~~ 118 (203)
....|-++|-|-|+.=+.+ .+-+..-+.+|+||||.=. . -|....+-.+.....+ .-..|+.|||+-
T Consensus 348 e~T~IkFMTDGVLLrEi~~--DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~~kpLKLIIMSATLR 425 (1172)
T KOG0926|consen 348 EDTSIKFMTDGVLLREIEN--DFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQIKPLKLIIMSATLR 425 (1172)
T ss_pred CCceeEEecchHHHHHHHH--hHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhcccCceeEEEEeeeEE
Confidence 3467999999999887764 5667888999999999621 0 1222222222233322 345899999984
Q ss_pred hhHHHHHH-h-cCC-CCeEEEeccCcccccccchhhhhccCCCCCceeEEEEEcCCC----CcHHHHHHHHhcCCCCeEE
Q 028826 119 EAVEELSK-A-GLR-NPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESD----KKPSQLVDLLIKNKSKKII 191 (203)
Q Consensus 119 ~~v~~~~~-~-~l~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~k~~~l~~ll~~~~~~~~l 191 (203)
+.+|.+ + .++ -|-.+.++.. +-| +...|-.-... +-+.....+=+..+.+-+|
T Consensus 426 --VsDFtenk~LFpi~pPlikVdAR----------------QfP--VsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~IL 485 (1172)
T KOG0926|consen 426 --VSDFTENKRLFPIPPPLIKVDAR----------------QFP--VSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGIL 485 (1172)
T ss_pred --ecccccCceecCCCCceeeeecc----------------cCc--eEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEE
Confidence 344442 1 222 2225555443 122 22233222221 1223333333466788899
Q ss_pred EEeccCCcc
Q 028826 192 MYVQHGNFS 200 (203)
Q Consensus 192 IF~ns~~~~ 200 (203)
||+.-.+.+
T Consensus 486 VFvTGQqEV 494 (1172)
T KOG0926|consen 486 VFVTGQQEV 494 (1172)
T ss_pred EEEeChHHH
Confidence 999765443
No 220
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=88.26 E-value=3.2 Score=39.23 Aligned_cols=70 Identities=14% Similarity=0.210 Sum_probs=53.2
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHh-----CCCeEEEeccHHHHHHHHhCCCccCCC
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEE-----EGANLLIGTPGRLYDIMERMDVLDFRN 76 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~-----~~~~ilV~Tp~~l~~~~~~~~~~~l~~ 76 (203)
+||++.+++-+..+.+.++.. . |+++..++||.+..+..+.+.. +++.|+|+|- . -. .++++..
T Consensus 496 vLVF~~~~~t~~~L~~~L~~~---~-Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTd-v-----gs-eGlNlq~ 564 (956)
T PRK04914 496 VLVICAKAATALQLEQALRER---E-GIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSE-I-----GS-EGRNFQF 564 (956)
T ss_pred EEEEeCcHHHHHHHHHHHhhc---c-CeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEech-h-----hc-cCCCccc
Confidence 689999999999998888543 2 7899999999987766665421 2589999983 2 12 5788888
Q ss_pred ccEEEE
Q 028826 77 LVILVL 82 (203)
Q Consensus 77 v~~lVi 82 (203)
++++|.
T Consensus 565 a~~VIn 570 (956)
T PRK04914 565 ASHLVL 570 (956)
T ss_pred ccEEEE
Confidence 888876
No 221
>PHA02558 uvsW UvsW helicase; Provisional
Probab=88.14 E-value=2.8 Score=36.56 Aligned_cols=71 Identities=13% Similarity=0.202 Sum_probs=51.1
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
.+|++...+=+..+.+.+++. +.++..++|+.+.++....+ .++...+||+|-+.+. .++|+.+++
T Consensus 347 ~lV~~~~~~h~~~L~~~L~~~-----g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~------eG~Dip~ld 415 (501)
T PHA02558 347 TFVMFKYVEHGKPLYEMLKKV-----YDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFS------TGISIKNLH 415 (501)
T ss_pred EEEEEEEHHHHHHHHHHHHHc-----CCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceec------ccccccccc
Confidence 477888877777666666663 67899999998766554422 2244578999876654 578999999
Q ss_pred EEEEc
Q 028826 79 ILVLD 83 (203)
Q Consensus 79 ~lViD 83 (203)
.+|+.
T Consensus 416 ~vIl~ 420 (501)
T PHA02558 416 HVIFA 420 (501)
T ss_pred EEEEe
Confidence 99974
No 222
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=88.08 E-value=4.4 Score=34.23 Aligned_cols=115 Identities=13% Similarity=0.188 Sum_probs=58.4
Q ss_pred EcCcHHHHHHHHHHHHHhhhcC-CCceEEEEEcCcc--hHHHHHHH----HhC--CCeEEEeccHHHHHHHHh---CCCc
Q 028826 5 ISPTRELSAQIYHVAQPFISTL-PDVKSMLLVGGVE--VKADVKKI----EEE--GANLLIGTPGRLYDIMER---MDVL 72 (203)
Q Consensus 5 l~PtreLa~Qi~~~~~~l~~~~-~~i~~~~~~~g~~--~~~~~~~l----~~~--~~~ilV~Tp~~l~~~~~~---~~~~ 72 (203)
+.+...+|...... ++... ...+...++|+.. ...-...+ ... +..++..|.+.+...+.. .+..
T Consensus 114 ~g~~n~~a~~~~~~---~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~ 190 (405)
T TIGR00362 114 VGKSNRLAHAAALA---VAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKM 190 (405)
T ss_pred cCCcHHHHHHHHHH---HHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCH
Confidence 34555555544333 33321 1235567777543 33333322 122 567888888775532211 0111
Q ss_pred -----cCCCccEEEEcchhHhhhhc-hHHHHHHHHHhC-CCCCcEEEEeeecChhHH
Q 028826 73 -----DFRNLVILVLDEADRLLDMG-FQKQISYIISRL-PKLRRTGLFSATQTEAVE 122 (203)
Q Consensus 73 -----~l~~v~~lViDEad~l~~~~-~~~~~~~il~~~-~~~~q~i~~SAT~~~~v~ 122 (203)
.+.+.++|++||+|.+.... ..+.+..++..+ ....|+++.|...|..+.
T Consensus 191 ~~~~~~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~ 247 (405)
T TIGR00362 191 EEFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELP 247 (405)
T ss_pred HHHHHHHHhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHh
Confidence 14567899999999875432 234455555444 244666655444444443
No 223
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=87.94 E-value=4.8 Score=33.44 Aligned_cols=107 Identities=21% Similarity=0.269 Sum_probs=72.3
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCc-chHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGV-EVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~-~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
.+|.+|+-+-+.|....+++- ++..++.++++.. ...++..+..++..+++|+|. .+. ++.-+.+++.+
T Consensus 308 ~liF~p~I~~~eq~a~~lk~~---~~~~~i~~Vhs~d~~R~EkV~~fR~G~~~lLiTTT-----ILE--RGVTfp~vdV~ 377 (441)
T COG4098 308 VLIFFPEIETMEQVAAALKKK---LPKETIASVHSEDQHRKEKVEAFRDGKITLLITTT-----ILE--RGVTFPNVDVF 377 (441)
T ss_pred EEEEecchHHHHHHHHHHHhh---CCccceeeeeccCccHHHHHHHHHcCceEEEEEee-----hhh--cccccccceEE
Confidence 589999999999998888553 3355666666643 466777788888999999997 333 57888999999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCCC-----CCcEEEEeeecChhH
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLPK-----LRRTGLFSATQTEAV 121 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~~-----~~q~i~~SAT~~~~v 121 (203)
|++-=|.++.. ..+-.|..+..+ .--+++|---.+.++
T Consensus 378 Vlgaeh~vfTe---saLVQIaGRvGRs~~~PtGdv~FFH~G~skaM 420 (441)
T COG4098 378 VLGAEHRVFTE---SALVQIAGRVGRSLERPTGDVLFFHYGKSKAM 420 (441)
T ss_pred EecCCcccccH---HHHHHHhhhccCCCcCCCCcEEEEeccchHHH
Confidence 99988877543 233344444322 224555544444443
No 224
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=87.81 E-value=9.6 Score=28.86 Aligned_cols=54 Identities=15% Similarity=0.220 Sum_probs=45.6
Q ss_pred CCCccEEEEcchhHhhhhch--HHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHh
Q 028826 74 FRNLVILVLDEADRLLDMGF--QKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~--~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~ 127 (203)
-...+++|+||+-..++.|+ .+++..++..-|...-+|+..-..|+++.++++.
T Consensus 113 ~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ADl 168 (191)
T PRK05986 113 DESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAADL 168 (191)
T ss_pred CCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCch
Confidence 35788999999998888884 6778888888888889999999999988887774
No 225
>PRK06893 DNA replication initiation factor; Validated
Probab=87.78 E-value=1.4 Score=34.26 Aligned_cols=90 Identities=11% Similarity=0.094 Sum_probs=50.2
Q ss_pred eEEEEEcCc--chHHHHHHHH----hCCCeEEEeccHHHHHHHHhCCCccCCCccEEEEcchhHhhh-hchHHHHHHHHH
Q 028826 30 KSMLLVGGV--EVKADVKKIE----EEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLD-MGFQKQISYIIS 102 (203)
Q Consensus 30 ~~~~~~~g~--~~~~~~~~l~----~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lViDEad~l~~-~~~~~~~~~il~ 102 (203)
...+++|.. .+.+-...+. ..+..+.+.+.......... -.-.+.+.+++++||+|.+.. ......+..++.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~~~-~~~~~~~~dlLilDDi~~~~~~~~~~~~l~~l~n 118 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFSPA-VLENLEQQDLVCLDDLQAVIGNEEWELAIFDLFN 118 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhhHH-HHhhcccCCEEEEeChhhhcCChHHHHHHHHHHH
Confidence 445677643 3444333332 24567777776543322211 111356788999999998753 223445666666
Q ss_pred hCCC-CCcEEEEeeecChh
Q 028826 103 RLPK-LRRTGLFSATQTEA 120 (203)
Q Consensus 103 ~~~~-~~q~i~~SAT~~~~ 120 (203)
.... ..+++++|++.++.
T Consensus 119 ~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 119 RIKEQGKTLLLISADCSPH 137 (229)
T ss_pred HHHHcCCcEEEEeCCCChH
Confidence 5543 44667777777554
No 226
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=87.70 E-value=0.73 Score=37.35 Aligned_cols=57 Identities=14% Similarity=0.242 Sum_probs=41.2
Q ss_pred cCCCccEEEEcchhHhhhhchHHHHHHHHHhCC-------CCCcEEEEeeecChhHHHHHHhcCC
Q 028826 73 DFRNLVILVLDEADRLLDMGFQKQISYIISRLP-------KLRRTGLFSATQTEAVEELSKAGLR 130 (203)
Q Consensus 73 ~l~~v~~lViDEad~l~~~~~~~~~~~il~~~~-------~~~q~i~~SAT~~~~v~~~~~~~l~ 130 (203)
....=+++|+||+|.| ..|..+.+.-.+.+.| +..-+|++|.+-..++.+.+-.+++
T Consensus 175 ~~C~rslFIFDE~DKm-p~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI~~~aL~~~~ 238 (344)
T KOG2170|consen 175 QACQRSLFIFDEVDKL-PPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEIARIALENAR 238 (344)
T ss_pred HhcCCceEEechhhhc-CHhHHHHHhhhhccccccccccccceEEEEEcCCcchHHHHHHHHHHH
Confidence 3455679999999998 4556777777777654 4567899998888777765554443
No 227
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=87.70 E-value=4.1 Score=35.04 Aligned_cols=94 Identities=16% Similarity=0.255 Sum_probs=50.3
Q ss_pred ceEEEEEcCcc--hHHHHHHHH----hC--CCeEEEeccHHHHHHHHh-C--CCc-----cCCCccEEEEcchhHhhhhc
Q 028826 29 VKSMLLVGGVE--VKADVKKIE----EE--GANLLIGTPGRLYDIMER-M--DVL-----DFRNLVILVLDEADRLLDMG 92 (203)
Q Consensus 29 i~~~~~~~g~~--~~~~~~~l~----~~--~~~ilV~Tp~~l~~~~~~-~--~~~-----~l~~v~~lViDEad~l~~~~ 92 (203)
.+...++|+.. ...-...+. .. +..++..|.+.+..-+.. . +.. .+.++++|++||+|.+....
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~ 227 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKE 227 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcCCH
Confidence 45567777543 333333321 22 567888888776543221 0 111 24568899999999875432
Q ss_pred -hHHHHHHHHHhCC-CCCcEEEEeeecChhHH
Q 028826 93 -FQKQISYIISRLP-KLRRTGLFSATQTEAVE 122 (203)
Q Consensus 93 -~~~~~~~il~~~~-~~~q~i~~SAT~~~~v~ 122 (203)
..+.+..++..+. ...|+++.|...|..+.
T Consensus 228 ~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~ 259 (450)
T PRK00149 228 RTQEEFFHTFNALHEAGKQIVLTSDRPPKELP 259 (450)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEECCCCHHHHH
Confidence 2344555554442 34566555544444433
No 228
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=87.51 E-value=1.5 Score=32.58 Aligned_cols=54 Identities=17% Similarity=0.164 Sum_probs=45.5
Q ss_pred CCCccEEEEcchhHhhhhc--hHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHh
Q 028826 74 FRNLVILVLDEADRLLDMG--FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~--~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~ 127 (203)
-.+.+++|+||+-..++.| -.+++..+++.-|...-+|+.+-..|+.+.++++.
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~ 150 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADL 150 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCce
Confidence 3578899999998888887 46677888888888889999999999988888773
No 229
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=87.41 E-value=1.6 Score=32.04 Aligned_cols=55 Identities=15% Similarity=0.157 Sum_probs=45.7
Q ss_pred cCCCccEEEEcchhHhhhhc--hHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHh
Q 028826 73 DFRNLVILVLDEADRLLDMG--FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (203)
Q Consensus 73 ~l~~v~~lViDEad~l~~~~--~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~ 127 (203)
.....+++|+||+-..++.+ -.+++..+++.-|...-+|+.+-..|+++.++++.
T Consensus 92 ~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD~ 148 (159)
T cd00561 92 ASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAADL 148 (159)
T ss_pred hcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCce
Confidence 34678999999998887777 46778888888888889999999999988887763
No 230
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=87.05 E-value=8.4 Score=32.75 Aligned_cols=117 Identities=14% Similarity=0.217 Sum_probs=73.8
Q ss_pred EEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcc--hHHHHHHH----Hh--CCCeEEEeccHHHHH-HHHhC--CC
Q 028826 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVE--VKADVKKI----EE--EGANLLIGTPGRLYD-IMERM--DV 71 (203)
Q Consensus 3 lil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~--~~~~~~~l----~~--~~~~ilV~Tp~~l~~-~~~~~--~~ 71 (203)
.|+.|+-.+|.-+...+.+-.+. ......++||.. ..+-...+ .+ .++.++..|.+.+.. ++... +.
T Consensus 89 Fv~g~~N~~A~aa~~~va~~~g~--~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~ 166 (408)
T COG0593 89 FVVGPSNRLAYAAAKAVAENPGG--AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNE 166 (408)
T ss_pred eeeCCchHHHHHHHHHHHhccCC--cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhh
Confidence 46788888887666666554322 367788888764 33333322 12 235889999988753 22210 11
Q ss_pred c-----cCCCccEEEEcchhHhhhh-chHHHHHHHHHhCCC-CCcEEEEeeecChhHH
Q 028826 72 L-----DFRNLVILVLDEADRLLDM-GFQKQISYIISRLPK-LRRTGLFSATQTEAVE 122 (203)
Q Consensus 72 ~-----~l~~v~~lViDEad~l~~~-~~~~~~~~il~~~~~-~~q~i~~SAT~~~~v~ 122 (203)
. .. ++++++||+++.+-.. ...+.+.+++..+.. ..|+++.|...|.++.
T Consensus 167 ~~~Fk~~y-~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 167 MEKFKEKY-SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred HHHHHHhh-ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 1 12 7999999999988543 357777777777753 3488888877777654
No 231
>PRK08084 DNA replication initiation factor; Provisional
Probab=86.97 E-value=6.2 Score=30.69 Aligned_cols=90 Identities=8% Similarity=0.039 Sum_probs=47.3
Q ss_pred CceEEEEEcCc--chHHHHHH----HHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEEEcchhHhhh-hchHHHHHHH
Q 028826 28 DVKSMLLVGGV--EVKADVKK----IEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLD-MGFQKQISYI 100 (203)
Q Consensus 28 ~i~~~~~~~g~--~~~~~~~~----l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lViDEad~l~~-~~~~~~~~~i 100 (203)
+.....++|.. .+.+-... +...+..+.+.+.+........ -.-.+.+..++++||+|.+-. ....+.+.++
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~-~~~~~~~~dlliiDdi~~~~~~~~~~~~lf~l 122 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWFVPE-VLEGMEQLSLVCIDNIECIAGDELWEMAIFDL 122 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhhhHH-HHHHhhhCCEEEEeChhhhcCCHHHHHHHHHH
Confidence 34567778753 33333332 2234567777777664332211 000134467999999998753 2345556666
Q ss_pred HHhCCC--CCcEEEEeeecCh
Q 028826 101 ISRLPK--LRRTGLFSATQTE 119 (203)
Q Consensus 101 l~~~~~--~~q~i~~SAT~~~ 119 (203)
+..... ..++++.|. .|+
T Consensus 123 ~n~~~e~g~~~li~ts~-~~p 142 (235)
T PRK08084 123 YNRILESGRTRLLITGD-RPP 142 (235)
T ss_pred HHHHHHcCCCeEEEeCC-CCh
Confidence 655432 235555544 443
No 232
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=86.81 E-value=3.4 Score=40.17 Aligned_cols=71 Identities=8% Similarity=0.136 Sum_probs=54.2
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHh-CCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEE-EGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~-~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
+||.+|+++-+..+.+.+++.. .+...+..++|+.+..++.+.... +...|||+|. .. . .++++.+++++
T Consensus 289 ILVFLpg~~EIe~lae~L~~~~--~~~~~VlpLhg~Ls~~eQ~~Vf~~~g~rkIIVATN-----IA-E-tSITIpgI~yV 359 (1294)
T PRK11131 289 ILIFMSGEREIRDTADALNKLN--LRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATN-----VA-E-TSLTVPGIKYV 359 (1294)
T ss_pred EEEEcCCHHHHHHHHHHHHhcC--CCcceEeecccCCCHHHHHHHhcccCCeeEEEecc-----HH-h-hccccCcceEE
Confidence 6899999998888888777642 335668889999988877765532 3568999998 22 3 68999999988
Q ss_pred E
Q 028826 81 V 81 (203)
Q Consensus 81 V 81 (203)
|
T Consensus 360 I 360 (1294)
T PRK11131 360 I 360 (1294)
T ss_pred E
Confidence 7
No 233
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=86.67 E-value=5.9 Score=35.50 Aligned_cols=93 Identities=14% Similarity=0.159 Sum_probs=54.1
Q ss_pred ceEEEEEcCc--chHHHHHHHHh------CCCeEEEeccHHHHHHH-Hh--CCCc-----cCCCccEEEEcchhHhhhhc
Q 028826 29 VKSMLLVGGV--EVKADVKKIEE------EGANLLIGTPGRLYDIM-ER--MDVL-----DFRNLVILVLDEADRLLDMG 92 (203)
Q Consensus 29 i~~~~~~~g~--~~~~~~~~l~~------~~~~ilV~Tp~~l~~~~-~~--~~~~-----~l~~v~~lViDEad~l~~~~ 92 (203)
.+..+++|+. .+.+-...+.+ .+..++..|.+.+..-+ .. .+.. .+.++++|+|||+|.+....
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKE 393 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCH
Confidence 3456777743 34444433321 25788888888765332 21 0111 14578999999999885432
Q ss_pred -hHHHHHHHHHhCCC-CCcEEEEeeecChhH
Q 028826 93 -FQKQISYIISRLPK-LRRTGLFSATQTEAV 121 (203)
Q Consensus 93 -~~~~~~~il~~~~~-~~q~i~~SAT~~~~v 121 (203)
..+.+.+++..+.. ..|+|+.|-..|..+
T Consensus 394 ~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL 424 (617)
T PRK14086 394 STQEEFFHTFNTLHNANKQIVLSSDRPPKQL 424 (617)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEecCCChHhh
Confidence 34556666666643 567777665555444
No 234
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=86.38 E-value=5.3 Score=39.56 Aligned_cols=75 Identities=9% Similarity=0.116 Sum_probs=49.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhc----------------------------CCCceEEEEEcCcchHHHHH---HHHh
Q 028826 1 MGMIISPTRELSAQIYHVAQPFIST----------------------------LPDVKSMLLVGGVEVKADVK---KIEE 49 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~----------------------------~~~i~~~~~~~g~~~~~~~~---~l~~ 49 (203)
.+||+++||..|..+...++++... .+...+...+||.+.++... .+++
T Consensus 246 stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~ 325 (1490)
T PRK09751 246 STIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKS 325 (1490)
T ss_pred CEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHh
Confidence 3699999999999888888776321 00122456678877665443 4455
Q ss_pred CCCeEEEeccHHHHHHHHhCCCccCCCccEEEE
Q 028826 50 EGANLLIGTPGRLYDIMERMDVLDFRNLVILVL 82 (203)
Q Consensus 50 ~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lVi 82 (203)
+...+||+|..- . -.+|+.+++++|.
T Consensus 326 G~LrvLVATssL-----E--LGIDIg~VDlVIq 351 (1490)
T PRK09751 326 GELRCVVATSSL-----E--LGIDMGAVDLVIQ 351 (1490)
T ss_pred CCceEEEeCcHH-----H--ccCCcccCCEEEE
Confidence 778999998632 1 3566777776665
No 235
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=86.21 E-value=0.63 Score=37.58 Aligned_cols=40 Identities=25% Similarity=0.224 Sum_probs=28.1
Q ss_pred CCCeEEEeccHHHHHHHH-hCCCccCCCccEEEEcchhHhhh
Q 028826 50 EGANLLIGTPGRLYDIME-RMDVLDFRNLVILVLDEADRLLD 90 (203)
Q Consensus 50 ~~~~ilV~Tp~~l~~~~~-~~~~~~l~~v~~lViDEad~l~~ 90 (203)
..+||||++-.-|++-.. ..-.+.+ .-.++||||||.+.+
T Consensus 210 ~~Adivi~ny~yll~~~~r~~~~~~l-~~~~lIiDEAHnL~d 250 (289)
T smart00488 210 EFANVVVLPYQYLLDPKIRQALSIEL-KDSIVIFDEAHNLDN 250 (289)
T ss_pred hcCCEEEECHHHHhcHHHHHHhcccc-cccEEEEeCccChHH
Confidence 358999999888875442 2112344 468999999999864
No 236
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=86.21 E-value=0.63 Score=37.58 Aligned_cols=40 Identities=25% Similarity=0.224 Sum_probs=28.1
Q ss_pred CCCeEEEeccHHHHHHHH-hCCCccCCCccEEEEcchhHhhh
Q 028826 50 EGANLLIGTPGRLYDIME-RMDVLDFRNLVILVLDEADRLLD 90 (203)
Q Consensus 50 ~~~~ilV~Tp~~l~~~~~-~~~~~~l~~v~~lViDEad~l~~ 90 (203)
..+||||++-.-|++-.. ..-.+.+ .-.++||||||.+.+
T Consensus 210 ~~Adivi~ny~yll~~~~r~~~~~~l-~~~~lIiDEAHnL~d 250 (289)
T smart00489 210 EFANVVVLPYQYLLDPKIRQALSIEL-KDSIVIFDEAHNLDN 250 (289)
T ss_pred hcCCEEEECHHHHhcHHHHHHhcccc-cccEEEEeCccChHH
Confidence 358999999888875442 2112344 468999999999864
No 237
>PRK07413 hypothetical protein; Validated
Probab=86.14 E-value=10 Score=31.92 Aligned_cols=54 Identities=15% Similarity=0.262 Sum_probs=45.4
Q ss_pred CCCccEEEEcchhHhhhhch--HHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHh
Q 028826 74 FRNLVILVLDEADRLLDMGF--QKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~--~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~ 127 (203)
-...+++|+||+-..++.|+ .+++..+++.-|...-+|+..-..|+++.++++.
T Consensus 123 sg~ydlvILDEi~~Al~~gll~~eevl~~L~~rP~~~evVLTGR~ap~~Lie~ADl 178 (382)
T PRK07413 123 SGLYSVVVLDELNPVLDLGLLPVDEVVNTLKSRPEGLEIIITGRAAPQSLLDIADL 178 (382)
T ss_pred CCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHhCCe
Confidence 35788999999998888884 6677788888888889999999999988888773
No 238
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=86.04 E-value=4.3 Score=39.48 Aligned_cols=71 Identities=11% Similarity=0.173 Sum_probs=54.3
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhC-CCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEE-GANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~-~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
+||++|+++-+.++.+.+++.. .+++.+..++|+.+..++.+..... +-.|||+|. .. . .++++.+++++
T Consensus 282 ILVFLpg~~EI~~l~~~L~~~~--~~~~~VlpLhg~Ls~~eQ~~vf~~~~~rkIVLATN-----IA-E-tSLTIpgV~yV 352 (1283)
T TIGR01967 282 ILIFLPGEREIRDAAEILRKRN--LRHTEILPLYARLSNKEQQRVFQPHSGRRIVLATN-----VA-E-TSLTVPGIHYV 352 (1283)
T ss_pred EEEeCCCHHHHHHHHHHHHhcC--CCCcEEEeccCCCCHHHHHHHhCCCCCceEEEecc-----HH-H-hccccCCeeEE
Confidence 6899999998888888887653 2367889999999988887765432 358999997 22 2 57888999987
Q ss_pred E
Q 028826 81 V 81 (203)
Q Consensus 81 V 81 (203)
|
T Consensus 353 I 353 (1283)
T TIGR01967 353 I 353 (1283)
T ss_pred E
Confidence 6
No 239
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=85.99 E-value=0.8 Score=34.21 Aligned_cols=96 Identities=16% Similarity=0.173 Sum_probs=37.0
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
.+|-+|+.+=+..+++.+.+-.... +++... .........+...+..|-.-.|+.+...- ...+++|
T Consensus 29 I~vtAP~~~~~~~lf~~~~~~l~~~-~~~~~~----~~~~~~~~~~~~~~~~i~f~~Pd~l~~~~--------~~~Dlli 95 (177)
T PF05127_consen 29 ILVTAPSPENVQTLFEFAEKGLKAL-GYKEEK----KKRIGQIIKLRFNKQRIEFVAPDELLAEK--------PQADLLI 95 (177)
T ss_dssp EEEE-SS--S-HHHHHCC-------------------------------CCC--B--HHHHCCT------------SCEE
T ss_pred EEEecCCHHHHHHHHHHHHhhcccc-cccccc----ccccccccccccccceEEEECCHHHHhCc--------CCCCEEE
Confidence 4677899887777766665543332 222200 00000111111234566666676654321 1347999
Q ss_pred EcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecC
Q 028826 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (203)
Q Consensus 82 iDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~ 118 (203)
||||=.+ -.+.+..+++ ..-.++||.|..
T Consensus 96 VDEAAaI----p~p~L~~ll~----~~~~vv~stTi~ 124 (177)
T PF05127_consen 96 VDEAAAI----PLPLLKQLLR----RFPRVVFSTTIH 124 (177)
T ss_dssp ECTGGGS-----HHHHHHHHC----CSSEEEEEEEBS
T ss_pred EechhcC----CHHHHHHHHh----hCCEEEEEeecc
Confidence 9999765 2344444443 334677788864
No 240
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=85.93 E-value=3.2 Score=25.81 Aligned_cols=51 Identities=16% Similarity=0.264 Sum_probs=38.9
Q ss_pred CceEEEEEcCcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhCCCccCCCccEEEEcch
Q 028826 28 DVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEA 85 (203)
Q Consensus 28 ~i~~~~~~~g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lViDEa 85 (203)
++++..++|+.+..+....+ .....+|||+|- .+. ..+|+..++.+|+=+.
T Consensus 7 ~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~~------~Gid~~~~~~vi~~~~ 60 (78)
T PF00271_consen 7 GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATD-ILG------EGIDLPDASHVIFYDP 60 (78)
T ss_dssp TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESC-GGT------TSSTSTTESEEEESSS
T ss_pred CCcEEEEECCCCHHHHHHHHHHhhccCceEEEeec-ccc------cccccccccccccccc
Confidence 89999999988877665544 346789999994 222 5899999999988555
No 241
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=85.89 E-value=1.6 Score=37.87 Aligned_cols=104 Identities=14% Similarity=0.180 Sum_probs=56.3
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHh-CCCccCCCccEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER-MDVLDFRNLVIL 80 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~-~~~~~l~~v~~l 80 (203)
.++.+++++-|..+++.++++....|.++... +. .. .....-.|..-..+.....+.. .+..+=.+..++
T Consensus 57 i~~~A~~~~QA~~~f~~~~~~i~~~~~l~~~~--~~-----~~--~~~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~ 127 (477)
T PF03354_consen 57 IYCAANTRDQAKIVFDEAKKMIEASPELRKRK--KP-----KI--IKSNKKEIEFPKTGSFFKALSSDADSLDGLNPSLA 127 (477)
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHhChhhccch--hh-----hh--hhhhceEEEEcCCCcEEEEEecCCCCccCCCCceE
Confidence 56889999999999999999987654333211 00 00 0001112222222222222111 133444567899
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEee
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SA 115 (203)
|+||+|.+-+....+.+..-.... .++|+++.|.
T Consensus 128 i~DE~h~~~~~~~~~~l~~g~~~r-~~pl~~~IST 161 (477)
T PF03354_consen 128 IFDELHAHKDDELYDALESGMGAR-PNPLIIIIST 161 (477)
T ss_pred EEeCCCCCCCHHHHHHHHhhhccC-CCceEEEEeC
Confidence 999999885544444444444443 4566655543
No 242
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=85.83 E-value=3.6 Score=36.22 Aligned_cols=84 Identities=12% Similarity=0.156 Sum_probs=54.3
Q ss_pred CccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhcc
Q 028826 76 NLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLAS 155 (203)
Q Consensus 76 ~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~ 155 (203)
....+||||+|.=++..-...+-.-++.++...|+++.|- -|.|...+..++ .|.-...
T Consensus 453 ~~ptlIFDEVD~GIsG~~A~aVg~~L~~Ls~~~QVl~VTH--lPQVAa~ad~H~----~V~K~~~--------------- 511 (557)
T COG0497 453 DTPTLIFDEVDTGISGRVAQAVGKKLRRLSEHHQVLCVTH--LPQVAAMADTHF----LVEKESE--------------- 511 (557)
T ss_pred CCCeEEEecccCCCChHHHHHHHHHHHHHhcCceEEEEec--HHHHHhhhcceE----EEEEecC---------------
Confidence 4669999999976655567777888999999999998853 344544444332 2211111
Q ss_pred CCCCCceeEEEEEcCCCCcHHHHHHHHh
Q 028826 156 SKTPLGLHLEYLECESDKKPSQLVDLLI 183 (203)
Q Consensus 156 ~~~~~~i~~~~~~~~~~~k~~~l~~ll~ 183 (203)
-....-.+..++.++|.+.+..+|-
T Consensus 512 ---~~~T~s~V~~L~~eeRveEiARMl~ 536 (557)
T COG0497 512 ---DGRTESRVRPLDKEERVEEIARMLG 536 (557)
T ss_pred ---CCceEEeeeeCCHhHHHHHHHHHhc
Confidence 1222344555677888888888873
No 243
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=84.88 E-value=3.2 Score=31.45 Aligned_cols=36 Identities=19% Similarity=0.399 Sum_probs=22.1
Q ss_pred CCCeEEEeccHHHHHHHHhCCCcc-C-CCccEEEEcchhHhhh
Q 028826 50 EGANLLIGTPGRLYDIMERMDVLD-F-RNLVILVLDEADRLLD 90 (203)
Q Consensus 50 ~~~~ilV~Tp~~l~~~~~~~~~~~-l-~~v~~lViDEad~l~~ 90 (203)
..++||++|+...... .+. . ..++++|||||-++..
T Consensus 169 ~~~~vi~~T~~~~~~~-----~~~~~~~~~d~vIvDEAsq~~e 206 (236)
T PF13086_consen 169 KEADVIFTTLSSAASP-----FLSNFKEKFDVVIVDEASQITE 206 (236)
T ss_dssp HT-SEEEEETCGGG-C-----CGTT-----SEEEETTGGGS-H
T ss_pred ccccccccccccchhh-----HhhhhcccCCEEEEeCCCCcch
Confidence 4689999999887321 222 2 2789999999987643
No 244
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=84.63 E-value=0.46 Score=44.35 Aligned_cols=76 Identities=11% Similarity=0.053 Sum_probs=46.0
Q ss_pred cEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCCCceeEEEEEcCCCCcHHHHHHHHhcC--C
Q 028826 109 RTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPSQLVDLLIKN--K 186 (203)
Q Consensus 109 q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~--~ 186 (203)
...+.|.|...+..+|.+.|--+-+. ++... +....... ..++.+..+|..++.+.+... .
T Consensus 535 kLaGMTGTA~te~~Ef~~iY~L~Vv~--IPTnr--------------P~~R~D~~-d~vy~t~~eK~~Ali~~I~~~~~~ 597 (1025)
T PRK12900 535 KLAGMTGTAETEASEFFEIYKLDVVV--IPTNK--------------PIVRKDMD-DLVYKTRREKYNAIVLKVEELQKK 597 (1025)
T ss_pred hhcccCCCChhHHHHHHHHhCCcEEE--CCCCC--------------CcceecCC-CeEecCHHHHHHHHHHHHHHHhhC
Confidence 45567777766666676555333322 32221 11111111 233356678999999999643 6
Q ss_pred CCeEEEEeccCCccc
Q 028826 187 SKKIIMYVQHGNFSE 201 (203)
Q Consensus 187 ~~~~lIF~ns~~~~e 201 (203)
++|+||||+|++.+|
T Consensus 598 grpVLIft~Sve~sE 612 (1025)
T PRK12900 598 GQPVLVGTASVEVSE 612 (1025)
T ss_pred CCCEEEEeCcHHHHH
Confidence 789999999988765
No 245
>PRK01172 ski2-like helicase; Provisional
Probab=84.47 E-value=8.2 Score=35.01 Aligned_cols=77 Identities=6% Similarity=0.120 Sum_probs=49.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCC--------------------ceEEEEEcCcchHHHHHH---HHhCCCeEEEe
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPD--------------------VKSMLLVGGVEVKADVKK---IEEEGANLLIG 57 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~--------------------i~~~~~~~g~~~~~~~~~---l~~~~~~ilV~ 57 (203)
.+||.+|||.-+..+...+.+....... ..+...+||.+..++... ..++...|||+
T Consensus 238 ~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLva 317 (674)
T PRK01172 238 QVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVA 317 (674)
T ss_pred cEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEe
Confidence 4799999999888887777654332111 246778888876654442 23467899999
Q ss_pred ccHHHHHHHHhCCCccCCCccEEEEcch
Q 028826 58 TPGRLYDIMERMDVLDFRNLVILVLDEA 85 (203)
Q Consensus 58 Tp~~l~~~~~~~~~~~l~~v~~lViDEa 85 (203)
|..-- .++++... .+|++..
T Consensus 318 T~~la-------~Gvnipa~-~VII~~~ 337 (674)
T PRK01172 318 TPTLA-------AGVNLPAR-LVIVRDI 337 (674)
T ss_pred cchhh-------ccCCCcce-EEEEcCc
Confidence 97332 35666554 5666554
No 246
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=84.47 E-value=2.6 Score=31.49 Aligned_cols=53 Identities=15% Similarity=0.249 Sum_probs=44.9
Q ss_pred CCCccEEEEcchhHhhhhch--HHHHHHHHHhCCCCCcEEEEeeecChhHHHHHH
Q 028826 74 FRNLVILVLDEADRLLDMGF--QKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~--~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~ 126 (203)
-...+++|+||+-..++.|+ .+++..+++.-|...-+|+..-..|+++.++++
T Consensus 113 ~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~AD 167 (178)
T PRK07414 113 EGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIAD 167 (178)
T ss_pred CCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCC
Confidence 35788999999988888884 677888888888888999999999988887766
No 247
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=84.38 E-value=8.5 Score=29.26 Aligned_cols=74 Identities=15% Similarity=0.278 Sum_probs=46.7
Q ss_pred CceEEEEEcCcchHHHHHHHHh----CCCeEEEeccHHHHHHHHhCCCccCCCccEEEEcchhHhhhhchHHHHHHHHHh
Q 028826 28 DVKSMLLVGGVEVKADVKKIEE----EGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISR 103 (203)
Q Consensus 28 ~i~~~~~~~g~~~~~~~~~l~~----~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lViDEad~l~~~~~~~~~~~il~~ 103 (203)
+.++..+....+.......+.+ +-+-++|-.+..+.+.+.. ..-+ .+++.+.||||. +++......+..+...
T Consensus 32 g~~v~vfkp~iD~R~~~~~V~Sr~G~~~~A~~i~~~~~i~~~i~~-~~~~-~~~~~v~IDEaQ-F~~~~~v~~l~~lad~ 108 (201)
T COG1435 32 GMKVLVFKPAIDTRYGVGKVSSRIGLSSEAVVIPSDTDIFDEIAA-LHEK-PPVDCVLIDEAQ-FFDEELVYVLNELADR 108 (201)
T ss_pred CCeEEEEecccccccccceeeeccCCcccceecCChHHHHHHHHh-cccC-CCcCEEEEehhH-hCCHHHHHHHHHHHhh
Confidence 6777777766554433332211 2356777778888887765 2222 228899999996 4566666777777776
Q ss_pred C
Q 028826 104 L 104 (203)
Q Consensus 104 ~ 104 (203)
+
T Consensus 109 l 109 (201)
T COG1435 109 L 109 (201)
T ss_pred c
Confidence 5
No 248
>PRK06835 DNA replication protein DnaC; Validated
Probab=84.33 E-value=10 Score=31.31 Aligned_cols=110 Identities=13% Similarity=0.199 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHhhhcCC-CceEEEEEcC--cchHHHHH----HHHhCCCeEEEeccHHHHHHHHhC---CC-------
Q 028826 9 RELSAQIYHVAQPFISTLP-DVKSMLLVGG--VEVKADVK----KIEEEGANLLIGTPGRLYDIMERM---DV------- 71 (203)
Q Consensus 9 reLa~Qi~~~~~~l~~~~~-~i~~~~~~~g--~~~~~~~~----~l~~~~~~ilV~Tp~~l~~~~~~~---~~------- 71 (203)
++-+.++...+.++...+. +-....++|. .....-.. .+...+..|++.|...+...+... ..
T Consensus 162 ~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~ 241 (329)
T PRK06835 162 RKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVY 241 (329)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHH
Confidence 5566677776776665321 2255677774 33333332 233467889999988887765330 11
Q ss_pred ccCCCccEEEEcchhHhhhhc-hHHHHHHHHHhCC-CCCcEEEEeeecCh
Q 028826 72 LDFRNLVILVLDEADRLLDMG-FQKQISYIISRLP-KLRRTGLFSATQTE 119 (203)
Q Consensus 72 ~~l~~v~~lViDEad~l~~~~-~~~~~~~il~~~~-~~~q~i~~SAT~~~ 119 (203)
-.+.++++||||+........ ....+..++...- ....+|+. +.+++
T Consensus 242 ~~l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiT-SNl~~ 290 (329)
T PRK06835 242 DLLINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIIS-TNLSL 290 (329)
T ss_pred HHhccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE-CCCCH
Confidence 124689999999997664222 3445555655443 33445554 44443
No 249
>PRK08727 hypothetical protein; Validated
Probab=84.32 E-value=1.9 Score=33.55 Aligned_cols=90 Identities=8% Similarity=-0.039 Sum_probs=49.1
Q ss_pred eEEEEEcCcc--hHHHHHH----HHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEEEcchhHhhhhc-hHHHHHHHHH
Q 028826 30 KSMLLVGGVE--VKADVKK----IEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMG-FQKQISYIIS 102 (203)
Q Consensus 30 ~~~~~~~g~~--~~~~~~~----l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lViDEad~l~~~~-~~~~~~~il~ 102 (203)
....++|+.. +.+-... +.+.+..+++.+.+.+...+.. ..-.+.+..++|+||+|.+.... ....+.+++.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~-~~~~l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n 120 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRD-ALEALEGRSLVALDGLESIAGQREDEVALFDFHN 120 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHH-HHHHHhcCCEEEEeCcccccCChHHHHHHHHHHH
Confidence 4567777543 3333332 3345677777776665543332 11135677899999999875432 2334445555
Q ss_pred hCCC-CCcEEEEeeecChh
Q 028826 103 RLPK-LRRTGLFSATQTEA 120 (203)
Q Consensus 103 ~~~~-~~q~i~~SAT~~~~ 120 (203)
.... ..++++.|...|..
T Consensus 121 ~~~~~~~~vI~ts~~~p~~ 139 (233)
T PRK08727 121 RARAAGITLLYTARQMPDG 139 (233)
T ss_pred HHHHcCCeEEEECCCChhh
Confidence 4432 33555555544443
No 250
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=83.77 E-value=3.1 Score=30.95 Aligned_cols=56 Identities=16% Similarity=0.251 Sum_probs=39.5
Q ss_pred ccCCCccEEEEcchhHhhhhc--hHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHh
Q 028826 72 LDFRNLVILVLDEADRLLDMG--FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (203)
Q Consensus 72 ~~l~~v~~lViDEad~l~~~~--~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~ 127 (203)
+.-...+++|+||+-..++.+ -.+++..+++.-|...-+|+..-..|+++.+.++.
T Consensus 92 i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~ADl 149 (172)
T PF02572_consen 92 ISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAADL 149 (172)
T ss_dssp TT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-SE
T ss_pred HhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCCe
Confidence 334678899999998888887 46778888888888899999999999988888773
No 251
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=83.49 E-value=1.8 Score=40.72 Aligned_cols=40 Identities=18% Similarity=0.205 Sum_probs=29.4
Q ss_pred CCCeEEEeccHHHHHHHHhCCCccCCCccEEEEcchhHhhh
Q 028826 50 EGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLD 90 (203)
Q Consensus 50 ~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lViDEad~l~~ 90 (203)
..+||||+.-.-|+..+.. +.--+.+-.++||||||+|-+
T Consensus 430 ~~AdivItNHalLl~dl~~-~~~ilp~~~~lViDEAH~l~d 469 (928)
T PRK08074 430 KFADLVITNHALLLTDLTS-EEPLLPSYEHIIIDEAHHFEE 469 (928)
T ss_pred hcCCEEEECHHHHHHHHhh-hcccCCCCCeEEEECCchHHH
Confidence 4689999999887765533 222245578999999999864
No 252
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=83.20 E-value=2.4 Score=39.05 Aligned_cols=83 Identities=17% Similarity=0.245 Sum_probs=60.5
Q ss_pred EEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHH-HHHHhC-----CCccCCC
Q 028826 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLY-DIMERM-----DVLDFRN 76 (203)
Q Consensus 3 lil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~-~~~~~~-----~~~~l~~ 76 (203)
.++...--||..=..++.++-..+ |+.++....+.+..++.... .+||..+|-..+- ++++.+ ...-...
T Consensus 125 hvVTvNdYLA~RDae~m~~l~~~L-GlsvG~~~~~m~~~ek~~aY---~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~ 200 (822)
T COG0653 125 HVVTVNDYLARRDAEWMGPLYEFL-GLSVGVILAGMSPEEKRAAY---ACDITYGTNNELGFDYLRDNMVTSQEEKVQRG 200 (822)
T ss_pred EEeeehHHhhhhCHHHHHHHHHHc-CCceeeccCCCChHHHHHHH---hcCceeccccccCcchhhhhhhccHHHhhhcc
Confidence 355566667777788888888888 99999999999776665544 5899999998873 444431 0111346
Q ss_pred ccEEEEcchhHhh
Q 028826 77 LVILVLDEADRLL 89 (203)
Q Consensus 77 v~~lViDEad~l~ 89 (203)
..+-|+||+|.++
T Consensus 201 ~~faIvDEvDSIL 213 (822)
T COG0653 201 LNFAIVDEVDSIL 213 (822)
T ss_pred CCeEEEcchhhee
Confidence 8899999999875
No 253
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=82.96 E-value=4.2 Score=31.66 Aligned_cols=89 Identities=16% Similarity=0.274 Sum_probs=47.8
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEE--cCcchH----HHHHHHH---hCCCeEEEeccHHHHHHHHh----
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLV--GGVEVK----ADVKKIE---EEGANLLIGTPGRLYDIMER---- 68 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~--~g~~~~----~~~~~l~---~~~~~ilV~Tp~~l~~~~~~---- 68 (203)
+-+++| +.|..|....++.-.+..-+-++..+. ...... +....+. ...-.|+++||+.++.+.-.
T Consensus 73 vrviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~ 151 (229)
T PF12340_consen 73 VRVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLER 151 (229)
T ss_pred EEEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHH
Confidence 446666 568888888876654444244444332 222211 1122111 23456999999998764321
Q ss_pred --CCCcc-----------CCCccEEEEcchhHhhhh
Q 028826 69 --MDVLD-----------FRNLVILVLDEADRLLDM 91 (203)
Q Consensus 69 --~~~~~-----------l~~v~~lViDEad~l~~~ 91 (203)
.+... +.+...=|+||.|..++.
T Consensus 152 l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~~ 187 (229)
T PF12340_consen 152 LQDGKPEEARELLKIQKWLDEHSRDILDESDEILSV 187 (229)
T ss_pred HHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccCc
Confidence 01110 334555688888887653
No 254
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=82.53 E-value=1.2 Score=41.42 Aligned_cols=54 Identities=15% Similarity=0.154 Sum_probs=47.1
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCC
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLR 130 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~ 130 (203)
+.--+.++||+|.-+|..|+..+..++..++...|+|. .|+-|++...+.+|+.
T Consensus 1118 DPAPFYlfDEIDAaLDaQyR~aVa~lIkelS~~aQFI~--TTFRpEll~vAdKfyg 1171 (1200)
T KOG0964|consen 1118 DPAPFYLFDEIDAALDAQYRTAVADLIKELSDSAQFIT--TTFRPELLSVADKFYG 1171 (1200)
T ss_pred CCcchhhHhHHhhhccHHHHHHHHHHHHHHhhccceEe--ecccHHHHHHHHhhhc
Confidence 34458899999999999999999999999999999886 5888999998888876
No 255
>PRK04195 replication factor C large subunit; Provisional
Probab=82.17 E-value=25 Score=30.52 Aligned_cols=80 Identities=14% Similarity=0.173 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhhhcCCCceEEEEEcCc--chHHHHHHHHh-CCCeEEEeccH------HHHHHHHhC-CCcc-C-CCc
Q 028826 10 ELSAQIYHVAQPFISTLPDVKSMLLVGGV--EVKADVKKIEE-EGANLLIGTPG------RLYDIMERM-DVLD-F-RNL 77 (203)
Q Consensus 10 eLa~Qi~~~~~~l~~~~~~i~~~~~~~g~--~~~~~~~~l~~-~~~~ilV~Tp~------~l~~~~~~~-~~~~-l-~~v 77 (203)
+...++..++..+..+. ..+...++|.. ....-...+.+ -+.+++..++. .+...+... .... + .+-
T Consensus 21 ~~~~~l~~~l~~~~~g~-~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~~i~~~~~~~sl~~~~~ 99 (482)
T PRK04195 21 KAKEQLREWIESWLKGK-PKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIERVAGEAATSGSLFGARR 99 (482)
T ss_pred HHHHHHHHHHHHHhcCC-CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHHHHHHhhccCcccCCCC
Confidence 34456666666654333 25667777743 33444444422 34566665542 233333320 1111 2 257
Q ss_pred cEEEEcchhHhhh
Q 028826 78 VILVLDEADRLLD 90 (203)
Q Consensus 78 ~~lViDEad~l~~ 90 (203)
++|||||+|.+..
T Consensus 100 kvIiIDEaD~L~~ 112 (482)
T PRK04195 100 KLILLDEVDGIHG 112 (482)
T ss_pred eEEEEecCccccc
Confidence 8999999999865
No 256
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=81.86 E-value=3.8 Score=38.62 Aligned_cols=74 Identities=18% Similarity=0.293 Sum_probs=52.1
Q ss_pred EEEEcCc---HHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCcc-CCCc
Q 028826 2 GMIISPT---RELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLD-FRNL 77 (203)
Q Consensus 2 alil~Pt---reLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~-l~~v 77 (203)
.||.+|+ +|.|..+.+.+++. |+++..++.+. .+.......+..|++||....-.-+++ .+| +..+
T Consensus 338 gLIfV~~d~G~e~aeel~e~Lr~~-----Gi~a~~~~a~~--~~~le~F~~GeidvLVGvAsyYG~lVR---GlDLP~ri 407 (1187)
T COG1110 338 GLIFVPIDYGREKAEELAEYLRSH-----GINAELIHAEK--EEALEDFEEGEVDVLVGVASYYGVLVR---GLDLPHRI 407 (1187)
T ss_pred eEEEEEcHHhHHHHHHHHHHHHhc-----CceEEEeeccc--hhhhhhhccCceeEEEEecccccceee---cCCchhhe
Confidence 6899999 88887777777665 78988888765 334444456889999999876655553 344 4566
Q ss_pred cEEEEcch
Q 028826 78 VILVLDEA 85 (203)
Q Consensus 78 ~~lViDEa 85 (203)
++.|+=.+
T Consensus 408 rYaIF~Gv 415 (1187)
T COG1110 408 RYAVFYGV 415 (1187)
T ss_pred eEEEEecC
Confidence 66666443
No 257
>PRK13766 Hef nuclease; Provisional
Probab=81.85 E-value=9.2 Score=35.24 Aligned_cols=73 Identities=16% Similarity=0.312 Sum_probs=52.2
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcC--------cchHHHHHH---HHhCCCeEEEeccHHHHHHHHhCC
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGG--------VEVKADVKK---IEEEGANLLIGTPGRLYDIMERMD 70 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g--------~~~~~~~~~---l~~~~~~ilV~Tp~~l~~~~~~~~ 70 (203)
+||++.+++-+.++.+.+.+. ++++..++|. .+..++.+. ...+..+++|+|. .. . .
T Consensus 368 vlIF~~~~~t~~~L~~~L~~~-----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~-----~~-~-e 435 (773)
T PRK13766 368 IIVFTQYRDTAEKIVDLLEKE-----GIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTS-----VA-E-E 435 (773)
T ss_pred EEEEeCcHHHHHHHHHHHHhC-----CCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECC-----hh-h-c
Confidence 689999999999999888553 6777777775 333333332 2346689999997 22 2 5
Q ss_pred CccCCCccEEEEcchh
Q 028826 71 VLDFRNLVILVLDEAD 86 (203)
Q Consensus 71 ~~~l~~v~~lViDEad 86 (203)
++|+.+++++|+=+.+
T Consensus 436 Gldi~~~~~VI~yd~~ 451 (773)
T PRK13766 436 GLDIPSVDLVIFYEPV 451 (773)
T ss_pred CCCcccCCEEEEeCCC
Confidence 7899999999986553
No 258
>PF13173 AAA_14: AAA domain
Probab=81.79 E-value=3.7 Score=28.54 Aligned_cols=41 Identities=10% Similarity=0.174 Sum_probs=29.4
Q ss_pred CccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecCh
Q 028826 76 NLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (203)
Q Consensus 76 ~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~ 119 (203)
.-.++++||++.+- ++...++.+...- .+.++++.++....
T Consensus 61 ~~~~i~iDEiq~~~--~~~~~lk~l~d~~-~~~~ii~tgS~~~~ 101 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP--DWEDALKFLVDNG-PNIKIILTGSSSSL 101 (128)
T ss_pred CCcEEEEehhhhhc--cHHHHHHHHHHhc-cCceEEEEccchHH
Confidence 56799999999884 4567777777755 45677777665543
No 259
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=81.78 E-value=7.8 Score=35.40 Aligned_cols=73 Identities=18% Similarity=0.310 Sum_probs=53.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEc--------CcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhC
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVG--------GVEVKADVKKI---EEEGANLLIGTPGRLYDIMERM 69 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~--------g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~ 69 (203)
.++|.+-||+.|..+..++.++... +++...+.| |.+...|...+ .++..+|||+|. +.+
T Consensus 415 R~IIFve~R~sa~~l~~~l~~~~~~--~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATS------V~E- 485 (746)
T KOG0354|consen 415 RTIIFVETRESALALKKWLLQLHEL--GIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATS------VAE- 485 (746)
T ss_pred cEEEEEehHHHHHHHHHHHHhhhhc--ccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEec------chh-
Confidence 3799999999999999999985333 678777776 44555555544 347899999995 223
Q ss_pred CCccCCCccEEEE
Q 028826 70 DVLDFRNLVILVL 82 (203)
Q Consensus 70 ~~~~l~~v~~lVi 82 (203)
.++|...+.++|-
T Consensus 486 EGLDI~ec~lVIc 498 (746)
T KOG0354|consen 486 EGLDIGECNLVIC 498 (746)
T ss_pred ccCCcccccEEEE
Confidence 5788888888774
No 260
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=81.60 E-value=5.3 Score=38.45 Aligned_cols=114 Identities=16% Similarity=0.166 Sum_probs=69.0
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchH-HHHHHHHhCCCeEEEeccHHHHHHHHhC-----------
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVK-ADVKKIEEEGANLLIGTPGRLYDIMERM----------- 69 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~-~~~~~l~~~~~~ilV~Tp~~l~~~~~~~----------- 69 (203)
.|||+|.- +..|++.++.+-++. ++++....|-.... -+...+ ..+|||++|-.-|..=+...
T Consensus 423 TLII~P~a-Il~QW~~EI~kH~~~--~lKv~~Y~Girk~~~~~~~el--~~yDIVlTtYdiLr~El~hte~~~~~R~lR~ 497 (1394)
T KOG0298|consen 423 TLIICPNA-ILMQWFEEIHKHISS--LLKVLLYFGIRKTFWLSPFEL--LQYDIVLTTYDILRNELYHTEDFGSDRQLRH 497 (1394)
T ss_pred eEEECcHH-HHHHHHHHHHHhccc--cceEEEEechhhhcccCchhh--hccCEEEeehHHHHhHhhcccccCChhhhhc
Confidence 48999965 678999998887665 47877766633211 111233 36899999998886433220
Q ss_pred --CCccC----CCcc--EEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHH
Q 028826 70 --DVLDF----RNLV--ILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEE 123 (203)
Q Consensus 70 --~~~~l----~~v~--~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~ 123 (203)
+..++ -.+. .+++|||-. +.. -.....+++.+++ .....+.|.|.-..+.+
T Consensus 498 qsr~~~~~SPL~~v~wWRIclDEaQM-ves-ssS~~a~M~~rL~-~in~W~VTGTPiq~Idd 556 (1394)
T KOG0298|consen 498 QSRYMRPNSPLLMVNWWRICLDEAQM-VES-SSSAAAEMVRRLH-AINRWCVTGTPIQKIDD 556 (1394)
T ss_pred ccCCCCCCCchHHHHHHHHhhhHHHh-hcc-hHHHHHHHHHHhh-hhceeeecCCchhhhhh
Confidence 11111 1222 478999964 444 4556667777774 44556777774433443
No 261
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=81.52 E-value=8.6 Score=35.82 Aligned_cols=70 Identities=17% Similarity=0.095 Sum_probs=47.3
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHH-----HHH---Hh----C-------CCeEEEeccHH
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADV-----KKI---EE----E-------GANLLIGTPGR 61 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~-----~~l---~~----~-------~~~ilV~Tp~~ 61 (203)
.+||+++|++-|..+++.+++. ++ ..++|+....+.. ..+ .+ + +..|||+|-
T Consensus 274 ~vLVF~NTv~~Aq~L~~~L~~~-----g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATd-- 344 (844)
T TIGR02621 274 AILVFCRTVKHVRKVFAKLPKE-----KF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTS-- 344 (844)
T ss_pred cEEEEECCHHHHHHHHHHHHhc-----CC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccc--
Confidence 3799999999999999988764 34 7888887766554 111 11 1 267999993
Q ss_pred HHHHHHhCCCccCCCccEEEEcch
Q 028826 62 LYDIMERMDVLDFRNLVILVLDEA 85 (203)
Q Consensus 62 l~~~~~~~~~~~l~~v~~lViDEa 85 (203)
.+. .++|++. ..+|.|.+
T Consensus 345 ---Vae--rGLDId~-d~VI~d~a 362 (844)
T TIGR02621 345 ---AGE--VGVNISA-DHLVCDLA 362 (844)
T ss_pred ---hhh--hcccCCc-ceEEECCC
Confidence 222 4677764 67776543
No 262
>PRK06620 hypothetical protein; Validated
Probab=81.49 E-value=22 Score=27.28 Aligned_cols=106 Identities=13% Similarity=0.074 Sum_probs=52.7
Q ss_pred EEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCc--chHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGV--EVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 3 lil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~--~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
.|+.++-+.|.+....+.+-....|.-+...++|.. .+.+-.... ...+...+.+.....+- ...+...+
T Consensus 18 Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~-~~~~~~~~~~~~~~~~~-------~~~~~d~l 89 (214)
T PRK06620 18 FIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIW-QNLSNAYIIKDIFFNEE-------ILEKYNAF 89 (214)
T ss_pred hEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHH-HhccCCEEcchhhhchh-------HHhcCCEE
Confidence 467776776665555444311111112557778753 344444443 33444444433222110 12345789
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCC-CCCcEEEEeeecChh
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSATQTEA 120 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~-~~~q~i~~SAT~~~~ 120 (203)
++||+|.+-+ ..+..++..+. ...|+++.|.|.|+.
T Consensus 90 liDdi~~~~~----~~lf~l~N~~~e~g~~ilits~~~p~~ 126 (214)
T PRK06620 90 IIEDIENWQE----PALLHIFNIINEKQKYLLLTSSDKSRN 126 (214)
T ss_pred EEeccccchH----HHHHHHHHHHHhcCCEEEEEcCCCccc
Confidence 9999995422 23445544443 345666666666654
No 263
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=81.41 E-value=5.5 Score=30.10 Aligned_cols=54 Identities=15% Similarity=0.226 Sum_probs=45.0
Q ss_pred CCccEEEEcchhHhhhhch--HHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhc
Q 028826 75 RNLVILVLDEADRLLDMGF--QKQISYIISRLPKLRRTGLFSATQTEAVEELSKAG 128 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~--~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~ 128 (203)
...+++|+||.-..+..|+ .+++..++..-|....+|+..-..|+.+.+++...
T Consensus 121 ~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADlV 176 (198)
T COG2109 121 GKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADLV 176 (198)
T ss_pred CCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHHH
Confidence 3688999999999988874 66777888888888889999988999988888753
No 264
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=81.17 E-value=17 Score=34.48 Aligned_cols=117 Identities=15% Similarity=0.171 Sum_probs=64.3
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcC---CCceEEEEEcCcchHHHHHHHH---hCCCeEEEeccHHHHHHHHhCCC----
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTL---PDVKSMLLVGGVEVKADVKKIE---EEGANLLIGTPGRLYDIMERMDV---- 71 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~---~~i~~~~~~~g~~~~~~~~~l~---~~~~~ilV~Tp~~l~~~~~~~~~---- 71 (203)
||||+|-.-+ .-+.+++.+....+ ..+.|..+..-...++....|. ..+.=.||| -+.+..+... +.
T Consensus 731 aLvV~PlNt~-~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~ggVmIiG-YdmyRnLa~g-r~vk~r 807 (1567)
T KOG1015|consen 731 ALVVCPLNTA-LNWMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQEDGGVMIIG-YDMYRNLAQG-RNVKSR 807 (1567)
T ss_pred EEEEcchHHH-HHHHHHHHHhcccccccccceeehhhhccChHHHHHHHHHHHhcCCEEEEe-hHHHHHHhcc-cchhhh
Confidence 7999996643 44566666665432 1456655554444455544442 244445555 2222222111 00
Q ss_pred ---------ccCCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHH
Q 028826 72 ---------LDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEE 123 (203)
Q Consensus 72 ---------~~l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~ 123 (203)
+-=..-+++|-||+|.|=.. ...+...+..+...+.+++.+..+-+++.+
T Consensus 808 k~ke~f~k~lvdpGPD~vVCDE~HiLKNe--ksa~Skam~~irtkRRI~LTGTPLQNNLmE 866 (1567)
T KOG1015|consen 808 KLKEIFNKALVDPGPDFVVCDEGHILKNE--KSAVSKAMNSIRTKRRIILTGTPLQNNLME 866 (1567)
T ss_pred HHHHHHHHhccCCCCCeEEecchhhhccc--hHHHHHHHHHHHhheeEEeecCchhhhhHH
Confidence 00123569999999987322 445555666665667777777777766554
No 265
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=81.06 E-value=9.8 Score=35.33 Aligned_cols=113 Identities=14% Similarity=0.120 Sum_probs=56.7
Q ss_pred EEEcCcHHHH---HHHHHHHHHhh--hcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHH------HHHh---
Q 028826 3 MIISPTRELS---AQIYHVAQPFI--STLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYD------IMER--- 68 (203)
Q Consensus 3 lil~PtreLa---~Qi~~~~~~l~--~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~------~~~~--- 68 (203)
||||||.+.- .+..+.+.+-. +.+.+.+.-.+.-....... ..-.++.|.+++.|-..... ++..
T Consensus 108 IivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~~~~-~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~ 186 (985)
T COG3587 108 IIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDIEKF-KFKSNNKPCVLLIFVSAFNKEEINANMINSESM 186 (985)
T ss_pred EEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechHHHHH-hhccCCCceEEEEehhhhccccccccccchhhh
Confidence 7999997653 33333333322 22323443333333222111 11225678888888665532 1211
Q ss_pred -CCCcc---------CCCcc-EEEEcchhHhhhh-chHHHHHHHHHhCCCCCc-EEEEeeecChhHH
Q 028826 69 -MDVLD---------FRNLV-ILVLDEADRLLDM-GFQKQISYIISRLPKLRR-TGLFSATQTEAVE 122 (203)
Q Consensus 69 -~~~~~---------l~~v~-~lViDEad~l~~~-~~~~~~~~il~~~~~~~q-~i~~SAT~~~~v~ 122 (203)
....+ +..++ ++|+||-|+|... .....+.. + ++| ++=||||+++...
T Consensus 187 ~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~~k~~~~i~~----l--~pl~ilRfgATfkd~y~ 247 (985)
T COG3587 187 ENTNLFNGATSPVDALASMRPIVIVDEPHRFLGDDKTYGAIKQ----L--NPLLILRFGATFKDEYN 247 (985)
T ss_pred cccCccccccCHHHHHHhcCCEEEecChhhcccchHHHHHHHh----h--CceEEEEecccchhhhc
Confidence 01100 22233 7899999999753 22322222 2 344 4559999987755
No 266
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=80.99 E-value=1.8 Score=39.48 Aligned_cols=41 Identities=22% Similarity=0.267 Sum_probs=28.4
Q ss_pred CCCeEEEeccHHHHHHHHh-CCCccCC-CccEEEEcchhHhhh
Q 028826 50 EGANLLIGTPGRLYDIMER-MDVLDFR-NLVILVLDEADRLLD 90 (203)
Q Consensus 50 ~~~~ilV~Tp~~l~~~~~~-~~~~~l~-~v~~lViDEad~l~~ 90 (203)
..+||||+.-.-|+.-+.. .+.+-.. +-.++||||||+|-+
T Consensus 218 ~~AdivVtNH~LLladl~~~~~~iLp~~~~~~lViDEAH~L~d 260 (697)
T PRK11747 218 DEADVVVANHDLVLADLELGGGVVLPDPENLLYVLDEGHHLPD 260 (697)
T ss_pred hhCCEEEECcHHHHhhhhccCCcccCCCCCCEEEEECccchHH
Confidence 4689999998877654432 1222222 468899999999864
No 267
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=79.73 E-value=8.5 Score=32.21 Aligned_cols=70 Identities=14% Similarity=0.218 Sum_probs=52.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhCCCccCCCc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v 77 (203)
+++|++.|++-+.++...+... +.++.+++|.....+....+ ..+...++|+|- ++ . +++++.++
T Consensus 265 q~~if~nt~r~v~~l~~~L~~~-----~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttd-----l~-a-rgidv~~~ 332 (397)
T KOG0327|consen 265 QAVIFCNTRRKVDNLTDKLRAH-----GFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTD-----LL-A-RGIDVQQV 332 (397)
T ss_pred cceEEecchhhHHHHHHHHhhC-----CceEEEeecccchhhhhHHHHHhhcCCceEEeecc-----cc-c-cccchhhc
Confidence 5899999999998888887544 78899999987765554433 346678888874 22 2 67888888
Q ss_pred cEEEE
Q 028826 78 VILVL 82 (203)
Q Consensus 78 ~~lVi 82 (203)
+.+|-
T Consensus 333 slvin 337 (397)
T KOG0327|consen 333 SLVVN 337 (397)
T ss_pred ceeee
Confidence 88874
No 268
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=79.54 E-value=9.4 Score=34.04 Aligned_cols=81 Identities=12% Similarity=0.170 Sum_probs=55.8
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHH---HHHhCCCeEEEecc-------------------
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTP------------------- 59 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~---~l~~~~~~ilV~Tp------------------- 59 (203)
+||-|.||--+.++.+.+..- |+++...++|.+.++... ....++..|+|+|-
T Consensus 233 GIIYc~sRk~~E~ia~~L~~~-----g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~l 307 (590)
T COG0514 233 GIIYCLTRKKVEELAEWLRKN-----GISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDL 307 (590)
T ss_pred eEEEEeeHHhHHHHHHHHHHC-----CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecC
Confidence 588999999888888877764 799999999988665433 22257889999993
Q ss_pred -HHHHHHHHhC---CCccCCCccEEEEcchhH
Q 028826 60 -GRLYDIMERM---DVLDFRNLVILVLDEADR 87 (203)
Q Consensus 60 -~~l~~~~~~~---~~~~l~~v~~lViDEad~ 87 (203)
..+..+..+. +.--.....++..+..|.
T Consensus 308 P~s~EsYyQE~GRAGRDG~~a~aill~~~~D~ 339 (590)
T COG0514 308 PGSIESYYQETGRAGRDGLPAEAILLYSPEDI 339 (590)
T ss_pred CCCHHHHHHHHhhccCCCCcceEEEeeccccH
Confidence 4444444431 222345566777777773
No 269
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=79.04 E-value=7.2 Score=25.06 Aligned_cols=62 Identities=15% Similarity=0.249 Sum_probs=33.9
Q ss_pred EEEEcCcHHHHHHHH-HHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHH-HHHHh
Q 028826 2 GMIISPTRELSAQIY-HVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLY-DIMER 68 (203)
Q Consensus 2 alil~PtreLa~Qi~-~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~-~~~~~ 68 (203)
.|++|++---...+. ..+++..... ++.+....+........ ...+|+++.||.--. ++...
T Consensus 2 IlvvC~~Gi~TS~~~~~~i~~~~~~~-gi~~~~~~~~~~~~~~~----~~~~D~il~~~~i~~~~~~~~ 65 (90)
T PF02302_consen 2 ILVVCGSGIGTSLMVANKIKKALKEL-GIEVEVSAGSILEVEEI----ADDADLILLTPQIAYEDLKEF 65 (90)
T ss_dssp EEEEESSSSHHHHHHHHHHHHHHHHT-TECEEEEEEETTTHHHH----HTT-SEEEEEESSGGHHHHHH
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhc-cCceEEEEecccccccc----cCCCcEEEEcCccchhhhhhh
Confidence 467777643333333 4555555544 67666666552222221 357999999997653 44433
No 270
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=78.95 E-value=25 Score=26.45 Aligned_cols=39 Identities=18% Similarity=0.213 Sum_probs=24.5
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCC-CCcEEEEeee
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPK-LRRTGLFSAT 116 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~-~~q~i~~SAT 116 (203)
+.+..++|||||-.+- ...+..++...+. ..+++++.=+
T Consensus 91 ~~~~~vliVDEasmv~----~~~~~~ll~~~~~~~~klilvGD~ 130 (196)
T PF13604_consen 91 LPKKDVLIVDEASMVD----SRQLARLLRLAKKSGAKLILVGDP 130 (196)
T ss_dssp -TSTSEEEESSGGG-B----HHHHHHHHHHS-T-T-EEEEEE-T
T ss_pred CCcccEEEEecccccC----HHHHHHHHHHHHhcCCEEEEECCc
Confidence 4566899999998662 3456677777765 6677777655
No 271
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=78.43 E-value=7.3 Score=35.81 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=40.9
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHH-------hCCCeEEEecc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIE-------EEGANLLIGTP 59 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~-------~~~~~ilV~Tp 59 (203)
++||+.|..-|..+|..++... . +++.++|........+... .+++.|+|||.
T Consensus 443 vlvI~NTV~~Aie~Y~~Lk~~~----~-~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQ 502 (733)
T COG1203 443 VLVIVNTVDRAIELYEKLKEKG----P-KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQ 502 (733)
T ss_pred EEEEEecHHHHHHHHHHHHhcC----C-CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEee
Confidence 6899999999999999998864 2 7888898776554444332 36899999994
No 272
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=78.06 E-value=2.7 Score=40.64 Aligned_cols=67 Identities=19% Similarity=0.330 Sum_probs=52.2
Q ss_pred hCCCeEEEeccHHHHHHHHhC--------------CCccCCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEe
Q 028826 49 EEGANLLIGTPGRLYDIMERM--------------DVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (203)
Q Consensus 49 ~~~~~ilV~Tp~~l~~~~~~~--------------~~~~l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~S 114 (203)
..|..|.+.-|++-.+.+... ..+.....-+.|+||+|.-+|.-....+..++..+....|+|+.|
T Consensus 1047 ~~Giei~a~ppgK~~~~l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s~~sQFIvIT 1126 (1163)
T COG1196 1047 TAGIEISARPPGKKLQSLSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMSKETQFIVIT 1126 (1163)
T ss_pred hcCcEEEEECCCCCccchhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhCcCCeEEEEE
Confidence 468899999998865422210 112356677999999999999988999999999999999999986
Q ss_pred e
Q 028826 115 A 115 (203)
Q Consensus 115 A 115 (203)
-
T Consensus 1127 h 1127 (1163)
T COG1196 1127 H 1127 (1163)
T ss_pred c
Confidence 4
No 273
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=77.89 E-value=9.5 Score=25.95 Aligned_cols=16 Identities=31% Similarity=0.561 Sum_probs=13.6
Q ss_pred ccEEEEcchhHhhhhc
Q 028826 77 LVILVLDEADRLLDMG 92 (203)
Q Consensus 77 v~~lViDEad~l~~~~ 92 (203)
-.++++||+|.+....
T Consensus 59 ~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKS 74 (132)
T ss_dssp SEEEEEETGGGTSHHC
T ss_pred ceeeeeccchhccccc
Confidence 5899999999998654
No 274
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=77.42 E-value=4.2 Score=35.70 Aligned_cols=24 Identities=21% Similarity=0.506 Sum_probs=22.1
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhc
Q 028826 2 GMIISPTRELSAQIYHVAQPFIST 25 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~ 25 (203)
+||++|++-||.|++.+++.|.+.
T Consensus 60 tLV~AhNKTLAaQLy~Efk~fFP~ 83 (663)
T COG0556 60 TLVLAHNKTLAAQLYSEFKEFFPE 83 (663)
T ss_pred eEEEecchhHHHHHHHHHHHhCcC
Confidence 699999999999999999999754
No 275
>KOG1556 consensus 26S proteasome regulatory complex, subunit RPN8/PSMD7 [Posttranslational modification, protein turnover, chaperones]
Probab=77.05 E-value=21 Score=28.09 Aligned_cols=61 Identities=18% Similarity=0.303 Sum_probs=49.2
Q ss_pred EEEcchhH-----hhhhchHHHHHHHHHhCCCCCcEEEEeeecCh------hHHHHHHhcCCCCeEEEeccC
Q 028826 80 LVLDEADR-----LLDMGFQKQISYIISRLPKLRRTGLFSATQTE------AVEELSKAGLRNPVRIEVRAE 140 (203)
Q Consensus 80 lViDEad~-----l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~------~v~~~~~~~l~~~~~i~~~~~ 140 (203)
+.|||-|. +++..|.+.|..++.+....-.++++-.|=|+ .+.++.+.|.++|+.+.++..
T Consensus 57 vpFeEDdk~~svWFlDh~Y~esM~~mfkKvNakekivGWYhTGPkl~~nDl~In~l~k~y~pnpvLvIIdvk 128 (309)
T KOG1556|consen 57 VPFEEDDKDKSVWFLDHNYIESMFGMFKKVNAKEKVVGWYHTGPKLRENDLDINELLKRYVPNPVLVIIDVK 128 (309)
T ss_pred ccccccCCCCceEEeccHHHHHHHHHHHHhcchhheeeeeccCCccccchhhHHHHHhhcCCCceEEEEecc
Confidence 44555443 45778999999999999888899999999775 477899999999998888775
No 276
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=76.72 E-value=9.5 Score=32.29 Aligned_cols=84 Identities=15% Similarity=0.246 Sum_probs=57.8
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+||++-.+.-+..|++-+.- +|+..+.++||.+.++....+ ..+.-||+|+|--. . +.+||.+++
T Consensus 424 VLIFaEkK~DVD~IhEYLLl-----KGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVA------S-KGLDFp~iq 491 (610)
T KOG0341|consen 424 VLIFAEKKADVDDIHEYLLL-----KGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVA------S-KGLDFPDIQ 491 (610)
T ss_pred eEEEeccccChHHHHHHHHH-----ccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecch------h-ccCCCccch
Confidence 46777777777666654432 389999999999877665544 34778999999622 3 678998888
Q ss_pred EEEEcchhHhhhhchHHHHHHHHHhCC
Q 028826 79 ILVLDEADRLLDMGFQKQISYIISRLP 105 (203)
Q Consensus 79 ~lViDEad~l~~~~~~~~~~~il~~~~ 105 (203)
++| ..+.-+++++...++.
T Consensus 492 HVI--------NyDMP~eIENYVHRIG 510 (610)
T KOG0341|consen 492 HVI--------NYDMPEEIENYVHRIG 510 (610)
T ss_pred hhc--------cCCChHHHHHHHHHhc
Confidence 765 3344556666666663
No 277
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=76.34 E-value=12 Score=33.91 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=21.1
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhh
Q 028826 2 GMIISPTRELSAQIYHVAQPFIS 24 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~ 24 (203)
+|||+|++.+|.|++..++.|.+
T Consensus 57 ~Lvi~~n~~~A~ql~~el~~f~p 79 (655)
T TIGR00631 57 TLVIAHNKTLAAQLYNEFKEFFP 79 (655)
T ss_pred EEEEECCHHHHHHHHHHHHHhCC
Confidence 58999999999999999999864
No 278
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=75.94 E-value=5.2 Score=29.22 Aligned_cols=67 Identities=18% Similarity=0.249 Sum_probs=40.4
Q ss_pred CCCeEEEeccHHH---------HHHHHhC-CCccCCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeec
Q 028826 50 EGANLLIGTPGRL---------YDIMERM-DVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117 (203)
Q Consensus 50 ~~~~ilV~Tp~~l---------~~~~~~~-~~~~l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~ 117 (203)
..+|+.+..|+.- .++.... ....-..-+++||||||.|-.. ....+...++.-|.+..+++.+...
T Consensus 66 ~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 66 NHPDFIIIKPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp -CTTEEEEETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred cCcceEEEecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECCh
Confidence 4688888887742 2233321 1111257889999999998544 3555666677777667666665543
No 279
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=75.91 E-value=10 Score=32.79 Aligned_cols=71 Identities=11% Similarity=0.098 Sum_probs=54.4
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHH---hCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIE---EEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~---~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
.+|.|-|+.-|.|+...+... +++...++|.....++...|. .+..+++|+|.-. . +.+|..+|+
T Consensus 340 tlvFvEt~~~~d~l~~~l~~~-----~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~Va------a-RGlDi~~V~ 407 (482)
T KOG0335|consen 340 TLVFVETKRGADELAAFLSSN-----GYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVA------A-RGLDIPNVK 407 (482)
T ss_pred EEEEeeccchhhHHHHHHhcC-----CCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhh------h-cCCCCCCCc
Confidence 478888888888777766554 788889999888777766553 3678999999732 2 689999999
Q ss_pred EEEEcc
Q 028826 79 ILVLDE 84 (203)
Q Consensus 79 ~lViDE 84 (203)
.+|.=+
T Consensus 408 hVInyD 413 (482)
T KOG0335|consen 408 HVINYD 413 (482)
T ss_pred eeEEee
Confidence 998744
No 280
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=75.05 E-value=2.9 Score=37.64 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=29.7
Q ss_pred CCCeEEEeccHHHHHHHHhCCCcc--CCCccEEEEcchhHhhh
Q 028826 50 EGANLLIGTPGRLYDIMERMDVLD--FRNLVILVLDEADRLLD 90 (203)
Q Consensus 50 ~~~~ilV~Tp~~l~~~~~~~~~~~--l~~v~~lViDEad~l~~ 90 (203)
..++++|+++..+..-... .... +-+-..+|+||||++-+
T Consensus 193 ~~ad~vv~nh~~~~~~~~~-~~~~~~~p~~~v~v~DEAH~l~d 234 (654)
T COG1199 193 ENADLVVTNHALLLADVAL-EESRILLPENDVVVFDEAHNLPD 234 (654)
T ss_pred hhCCEEEEccHHHHhHHHh-hhhhccCCcccEEEEeccccchH
Confidence 4689999999998864443 2222 44678999999999865
No 281
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=75.01 E-value=6.3 Score=31.10 Aligned_cols=42 Identities=21% Similarity=0.201 Sum_probs=31.0
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeee
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 116 (203)
..+-+.+|+||||.|-+. -...+++.++..++.+.+.+...+
T Consensus 111 ~grhKIiILDEADSMT~g-AQQAlRRtMEiyS~ttRFalaCN~ 152 (333)
T KOG0991|consen 111 PGRHKIIILDEADSMTAG-AQQALRRTMEIYSNTTRFALACNQ 152 (333)
T ss_pred CCceeEEEeeccchhhhH-HHHHHHHHHHHHcccchhhhhhcc
Confidence 367889999999999554 567778877777776666555444
No 282
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=74.10 E-value=17 Score=22.07 Aligned_cols=51 Identities=18% Similarity=0.334 Sum_probs=35.8
Q ss_pred CceEEEEEcCcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhCCCccCCCccEEEEcch
Q 028826 28 DVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEA 85 (203)
Q Consensus 28 ~i~~~~~~~g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lViDEa 85 (203)
++++..++|+.+..++...+ .+....|+|+|. .+. ..+++.+++.+|+-+.
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-----~~~--~Gi~~~~~~~vi~~~~ 64 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATD-----VAE--RGLDLPGVDLVIIYDL 64 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECC-----hhh--CCcChhcCCEEEEeCC
Confidence 68899999987766554433 235678888885 222 5788888888887555
No 283
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=73.97 E-value=6.1 Score=36.82 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=27.3
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEe
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~S 114 (203)
++-+++||||+|.|-... ...+.++++..+....+|+.+
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 567899999999996544 445556666666666666654
No 284
>PF13514 AAA_27: AAA domain
Probab=73.93 E-value=6.4 Score=37.98 Aligned_cols=55 Identities=18% Similarity=0.258 Sum_probs=45.2
Q ss_pred EEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEE
Q 028826 79 ILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRI 135 (203)
Q Consensus 79 ~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i 135 (203)
-||+|++=.-+|......+..++..+....|+|+||. .+++.++++..+.+.+.|
T Consensus 1054 P~IlDD~fvnfDd~R~~~~l~~L~~ls~~~QVI~FTc--h~~l~~~a~~~~~~~v~v 1108 (1111)
T PF13514_consen 1054 PFILDDIFVNFDDERARAALELLAELSRRRQVIYFTC--HEHLVELAREVFGDRVNV 1108 (1111)
T ss_pred cEEeeCCccccCHHHHHHHHHHHHHhccCCeEEEEec--cHHHHHHHHHhcCCCCce
Confidence 3899998766788888899999999999999999965 577888888876665554
No 285
>PRK06526 transposase; Provisional
Probab=73.90 E-value=5 Score=31.77 Aligned_cols=71 Identities=13% Similarity=0.081 Sum_probs=42.0
Q ss_pred hCCCeEEEeccHHHHHHHHh---CCCc-----cCCCccEEEEcchhHhhh-hchHHHHHHHHHhCCCCCcEEEEeeecCh
Q 028826 49 EEGANLLIGTPGRLYDIMER---MDVL-----DFRNLVILVLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTE 119 (203)
Q Consensus 49 ~~~~~ilV~Tp~~l~~~~~~---~~~~-----~l~~v~~lViDEad~l~~-~~~~~~~~~il~~~~~~~q~i~~SAT~~~ 119 (203)
..+..+++.|...+.+-+.. .+.+ .+.+..++|+||++.+-. ..-...+..++........+|++|..-+.
T Consensus 124 ~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~ 203 (254)
T PRK06526 124 QAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFG 203 (254)
T ss_pred HCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHH
Confidence 46778888888877665532 0111 256788999999997632 22234455665443333456666555443
No 286
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=73.79 E-value=18 Score=22.25 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=32.5
Q ss_pred EEEEcCcH-HHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccH
Q 028826 2 GMIISPTR-ELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPG 60 (203)
Q Consensus 2 alil~Ptr-eLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~ 60 (203)
++++||+. .-+..+...+++..+.. ++....-..+.... .....+|++++|+.
T Consensus 2 il~vc~~G~~~s~~l~~~l~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~dliitt~~ 55 (84)
T cd00133 2 ILVVCGSGIGSSSMLAEKLEKAAKEL-GIEVKVEAQGLSEV-----IDLADADLIISTVP 55 (84)
T ss_pred EEEECCCcHhHHHHHHHHHHHHHHHC-CCeEEEEEcccchh-----hhcCCccEEEECCc
Confidence 57889887 55666677777776655 55433322222211 12367999999995
No 287
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=73.75 E-value=4.8 Score=37.07 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=24.6
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEe
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~S 114 (203)
.+.+++||||+|.|-...+.. +.++++.-+....+|+.+
T Consensus 118 gr~KVIIIDEah~LT~~A~NA-LLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNA-MLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHHHHHH-HHHHHHhcCCCeEEEEEE
Confidence 467899999999886544433 344555555555555543
No 288
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=73.06 E-value=19 Score=31.07 Aligned_cols=72 Identities=14% Similarity=0.146 Sum_probs=54.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhCCCccCCCc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v 77 (203)
.|+|++-|+.-+..+.+.+++-+.. .+.+++++|+....+....+ .+....++|+|--.- +.+|+..+
T Consensus 507 kaiifcrtk~dcDnLer~~~qkgg~--~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaa-------rgldi~g~ 577 (725)
T KOG0349|consen 507 KAIIFCRTKQDCDNLERMMNQKGGK--HYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAA-------RGLDITGL 577 (725)
T ss_pred ceEEEEeccccchHHHHHHHHcCCc--cceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhh-------ccccccCC
Confidence 4899999999999888888887654 68999999998776666555 335688999986332 56776666
Q ss_pred cEEE
Q 028826 78 VILV 81 (203)
Q Consensus 78 ~~lV 81 (203)
-++|
T Consensus 578 p~~i 581 (725)
T KOG0349|consen 578 PFMI 581 (725)
T ss_pred ceEE
Confidence 6654
No 289
>PRK02362 ski2-like helicase; Provisional
Probab=72.82 E-value=21 Score=32.86 Aligned_cols=75 Identities=8% Similarity=0.099 Sum_probs=48.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhc----------------C---------------CCceEEEEEcCcchHHHHH---H
Q 028826 1 MGMIISPTRELSAQIYHVAQPFIST----------------L---------------PDVKSMLLVGGVEVKADVK---K 46 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~----------------~---------------~~i~~~~~~~g~~~~~~~~---~ 46 (203)
.+||.+|||.-|..+...+.+.... . -...++..+||.+..++.. .
T Consensus 245 ~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~ 324 (737)
T PRK02362 245 QCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDA 324 (737)
T ss_pred CeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHH
Confidence 4799999998877776666543210 0 0135778889987665443 2
Q ss_pred HHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEEE
Q 028826 47 IEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVL 82 (203)
Q Consensus 47 l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lVi 82 (203)
..++...|||+|+.-- .++++....++|-
T Consensus 325 Fr~G~i~VLvaT~tla-------~GvnlPa~~VVI~ 353 (737)
T PRK02362 325 FRDRLIKVISSTPTLA-------AGLNLPARRVIIR 353 (737)
T ss_pred HHcCCCeEEEechhhh-------hhcCCCceEEEEe
Confidence 2357789999998432 3677777766653
No 290
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=72.59 E-value=12 Score=32.42 Aligned_cols=35 Identities=17% Similarity=0.319 Sum_probs=26.3
Q ss_pred cCCCccE-EEEcchhHhhhhc---hHHHHHHHHHhCCCC
Q 028826 73 DFRNLVI-LVLDEADRLLDMG---FQKQISYIISRLPKL 107 (203)
Q Consensus 73 ~l~~v~~-lViDEad~l~~~~---~~~~~~~il~~~~~~ 107 (203)
|+.+-++ +.|||||.+++.. +.+.++.+.+.+.+.
T Consensus 251 D~dkPklVfFfDEAHLLF~da~kall~~ieqvvrLIRSK 289 (502)
T PF05872_consen 251 DLDKPKLVFFFDEAHLLFNDAPKALLDKIEQVVRLIRSK 289 (502)
T ss_pred CCCCceEEEEEechhhhhcCCCHHHHHHHHHHHHHhhcc
Confidence 5667776 5599999999643 777888888888543
No 291
>PLN03025 replication factor C subunit; Provisional
Probab=72.45 E-value=7.2 Score=31.80 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=26.5
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEe
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~S 114 (203)
.+.+++++||+|.|.... ...+.+.++..+....+++.+
T Consensus 98 ~~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~il~~ 136 (319)
T PLN03025 98 GRHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFALAC 136 (319)
T ss_pred CCeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEEEEe
Confidence 457899999999986543 455666666665555555443
No 292
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=72.10 E-value=14 Score=32.48 Aligned_cols=71 Identities=17% Similarity=0.261 Sum_probs=51.3
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHH---hCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIE---EEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~---~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
++|++-|+.-|..++- +.+-+ |++++.++|+.+..+....|. +..+|++|+|-- . . +.+|...++
T Consensus 429 ~ivFv~tKk~AHRl~I----llGLl-gl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDv-----A-s-RGLDI~gV~ 496 (691)
T KOG0338|consen 429 TIVFVRTKKQAHRLRI----LLGLL-GLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDV-----A-S-RGLDIEGVQ 496 (691)
T ss_pred eEEEEehHHHHHHHHH----HHHHh-hchhhhhcccccHHHHHHHHHHHHhccCCEEEEech-----h-h-ccCCcccee
Confidence 5788888876654433 22333 899999999999887777663 468999999962 2 2 578888888
Q ss_pred EEEEcc
Q 028826 79 ILVLDE 84 (203)
Q Consensus 79 ~lViDE 84 (203)
.+|==+
T Consensus 497 tVINy~ 502 (691)
T KOG0338|consen 497 TVINYA 502 (691)
T ss_pred EEEecc
Confidence 887433
No 293
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=71.95 E-value=5 Score=36.28 Aligned_cols=41 Identities=15% Similarity=0.220 Sum_probs=25.9
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEee
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SA 115 (203)
..+-+++||||+|.|-...+.. +...++.-+....+|+.|.
T Consensus 122 ~gr~KViIIDEah~Ls~~AaNA-LLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFNA-MLKTLEEPPEHVKFILATT 162 (700)
T ss_pred cCCceEEEEEChHhcCHHHHHH-HHHhhccCCCCceEEEEeC
Confidence 3567899999999986554433 3334444455666666653
No 294
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=71.93 E-value=2.1 Score=39.87 Aligned_cols=76 Identities=9% Similarity=0.022 Sum_probs=45.4
Q ss_pred cEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCCCceeEEEEEcCCCCcHHHHHHHHhc--CC
Q 028826 109 RTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPSQLVDLLIK--NK 186 (203)
Q Consensus 109 q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~--~~ 186 (203)
...+.|.|......+|.+.|--+-+.|..... ..... ....++.+..+|..++.+-+.. ..
T Consensus 381 kLsGMTGTa~te~~Ef~~iY~l~Vv~IPtnkp----------------~~R~d-~~d~v~~t~~~k~~av~~~i~~~~~~ 443 (896)
T PRK13104 381 KLSGMTGTADTEAYEFQQIYNLEVVVIPTNRS----------------MIRKD-EADLVYLTQADKFQAIIEDVRECGVR 443 (896)
T ss_pred hhccCCCCChhHHHHHHHHhCCCEEECCCCCC----------------cceec-CCCeEEcCHHHHHHHHHHHHHHHHhC
Confidence 45667777776666677666444333222111 11111 1123344667788888887753 46
Q ss_pred CCeEEEEeccCCccc
Q 028826 187 SKKIIMYVQHGNFSE 201 (203)
Q Consensus 187 ~~~~lIF~ns~~~~e 201 (203)
++|+||||+|.+.+|
T Consensus 444 g~PVLVgt~Sie~sE 458 (896)
T PRK13104 444 KQPVLVGTVSIEASE 458 (896)
T ss_pred CCCEEEEeCcHHHHH
Confidence 789999999988776
No 295
>PRK00254 ski2-like helicase; Provisional
Probab=71.84 E-value=23 Score=32.50 Aligned_cols=47 Identities=13% Similarity=0.178 Sum_probs=32.2
Q ss_pred eEEEEEcCcchHHHHH---HHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEEEc
Q 028826 30 KSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLD 83 (203)
Q Consensus 30 ~~~~~~~g~~~~~~~~---~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lViD 83 (203)
.+...++|.+..++.. ...++..+|||+|+.-- .++++.....+|.+
T Consensus 297 gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa-------~Gvnipa~~vVI~~ 346 (720)
T PRK00254 297 GVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLS-------AGINLPAFRVIIRD 346 (720)
T ss_pred CEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHh-------hhcCCCceEEEECC
Confidence 4788899988665543 23357789999998432 35777777766643
No 296
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=71.53 E-value=30 Score=30.30 Aligned_cols=73 Identities=16% Similarity=0.322 Sum_probs=53.0
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEc--------CcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhCC
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVG--------GVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMD 70 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~--------g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~~ 70 (203)
++|++--|+=|..+.+.+.+.+.. .+ +.+.| |.+..+|...+ .++..++||+|. +.. .
T Consensus 369 vIVFT~yRdTae~i~~~L~~~~~~---~~-~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTS------VgE-E 437 (542)
T COG1111 369 VIVFTEYRDTAEEIVNFLKKIGIK---AR-VRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATS------VGE-E 437 (542)
T ss_pred EEEEehhHhHHHHHHHHHHhcCCc---ce-eEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcc------ccc-c
Confidence 678888899998888888877533 33 34454 45666666654 346899999996 234 6
Q ss_pred CccCCCccEEEEcch
Q 028826 71 VLDFRNLVILVLDEA 85 (203)
Q Consensus 71 ~~~l~~v~~lViDEa 85 (203)
++|+-+++++|+=|+
T Consensus 438 GLDIp~vDlVifYEp 452 (542)
T COG1111 438 GLDIPEVDLVIFYEP 452 (542)
T ss_pred cCCCCcccEEEEecC
Confidence 899999999998765
No 297
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=71.30 E-value=14 Score=34.84 Aligned_cols=73 Identities=21% Similarity=0.254 Sum_probs=54.0
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHH---HHHhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~---~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+||+|-..+-|.-+.+.+.+- ++.+..++||.+...... +++++.+.++|+|-. +. +.+++.++.
T Consensus 616 tiiFv~~qe~~d~l~~~L~~a-----g~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsv-----va--rGLdv~~l~ 683 (997)
T KOG0334|consen 616 TIIFVDKQEKADALLRDLQKA-----GYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSV-----VA--RGLDVKELI 683 (997)
T ss_pred EEEEEcCchHHHHHHHHHHhc-----CcchhhhcCCCchHHHHhHHHHHhccCceEEEehhh-----hh--cccccccce
Confidence 678888888887776666643 788888999998754433 455678999999975 22 578888888
Q ss_pred EEEEcchh
Q 028826 79 ILVLDEAD 86 (203)
Q Consensus 79 ~lViDEad 86 (203)
++|-+.+-
T Consensus 684 Lvvnyd~p 691 (997)
T KOG0334|consen 684 LVVNYDFP 691 (997)
T ss_pred EEEEcccc
Confidence 88876643
No 298
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=70.99 E-value=19 Score=32.71 Aligned_cols=65 Identities=6% Similarity=0.086 Sum_probs=44.4
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHh-CCCeEEEeccHHHHHHHHhCCCccCC---Cc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEE-EGANLLIGTPGRLYDIMERMDVLDFR---NL 77 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~-~~~~ilV~Tp~~l~~~~~~~~~~~l~---~v 77 (203)
+||.+.|.+-+..+...+.+. ++++..++|.....+....... ....|+|+|- +.. +.+|+. ++
T Consensus 476 vLIft~t~~~se~L~~~L~~~-----gi~~~~Lhg~~~~rE~~ii~~ag~~g~VlVATd-----mAg--RGtDI~l~~~V 543 (656)
T PRK12898 476 VLVGTRSVAASERLSALLREA-----GLPHQVLNAKQDAEEAAIVARAGQRGRITVATN-----MAG--RGTDIKLEPGV 543 (656)
T ss_pred EEEEeCcHHHHHHHHHHHHHC-----CCCEEEeeCCcHHHHHHHHHHcCCCCcEEEEcc-----chh--cccCcCCccch
Confidence 699999999999888888774 7889999987543332221212 3468999995 333 466665 55
Q ss_pred c
Q 028826 78 V 78 (203)
Q Consensus 78 ~ 78 (203)
+
T Consensus 544 ~ 544 (656)
T PRK12898 544 A 544 (656)
T ss_pred h
Confidence 4
No 299
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=70.18 E-value=23 Score=30.05 Aligned_cols=65 Identities=14% Similarity=0.181 Sum_probs=35.3
Q ss_pred CCeEEEeccHH-------HHHHHHhC-CCccCCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeee
Q 028826 51 GANLLIGTPGR-------LYDIMERM-DVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (203)
Q Consensus 51 ~~~ilV~Tp~~-------l~~~~~~~-~~~~l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 116 (203)
.||+.+.+|+. +.++.... ......+-++++|||+|.|-... ...+...++.-|....+++.+.+
T Consensus 84 hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~a-anaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 84 HPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERA-ANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred CCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHH-HHHHHHHhhcCCCCCeEEEEECC
Confidence 47887777752 22333220 11223567899999999995443 23344444544445444444333
No 300
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=70.02 E-value=5.6 Score=30.16 Aligned_cols=38 Identities=21% Similarity=0.344 Sum_probs=30.0
Q ss_pred cEEEEcchhHhhhhchHHHHHHHHHhCCC-CCcEEEEee
Q 028826 78 VILVLDEADRLLDMGFQKQISYIISRLPK-LRRTGLFSA 115 (203)
Q Consensus 78 ~~lViDEad~l~~~~~~~~~~~il~~~~~-~~q~i~~SA 115 (203)
.++++||.+.-+.......+..++..+.+ +.|+++.|-
T Consensus 259 ~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTH 297 (303)
T PF13304_consen 259 SILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTH 297 (303)
T ss_dssp SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES
T ss_pred eEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCc
Confidence 78999999988887777777777777765 789977653
No 301
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=69.48 E-value=27 Score=32.51 Aligned_cols=53 Identities=11% Similarity=0.122 Sum_probs=37.1
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHH---HHHHHhCCCeEEEec
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKAD---VKKIEEEGANLLIGT 58 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~---~~~l~~~~~~ilV~T 58 (203)
+||+++||.-|..+...++++.. ..+..-+|..+.+.. ++.+++++...+|||
T Consensus 256 tLIF~NTR~~aE~l~~~L~~~~~----~~i~~HHgSlSre~R~~vE~~lk~G~lravV~T 311 (814)
T COG1201 256 TLIFTNTRSGAERLAFRLKKLGP----DIIEVHHGSLSRELRLEVEERLKEGELKAVVAT 311 (814)
T ss_pred EEEEEeChHHHHHHHHHHHHhcC----CceeeecccccHHHHHHHHHHHhcCCceEEEEc
Confidence 68999999999888888887742 445555666554432 335566778888887
No 302
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=68.93 E-value=7 Score=34.30 Aligned_cols=39 Identities=15% Similarity=0.217 Sum_probs=26.2
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEe
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~S 114 (203)
.+-+++||||+|.|-...+ ..+...++..|....+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 4678999999998865444 34445666666666666654
No 303
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=68.76 E-value=5.9 Score=37.18 Aligned_cols=79 Identities=20% Similarity=0.322 Sum_probs=53.1
Q ss_pred CceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEEEcchhHhhhhchHHHHHHHHHhCCCC
Q 028826 28 DVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKL 107 (203)
Q Consensus 28 ~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~ 107 (203)
|+.+..-.|| -+.+....| .+|-.=+|+=. -++.| +.++.--+.|+||+|.-+|..+-..+-++++.-..+
T Consensus 1065 GLEvkV~~G~-iWKeSL~EL-SGGQRSLVALs-LIlam------L~fkPAPlYILDEVDAALDLSHTQNIG~mIkthF~~ 1135 (1174)
T KOG0933|consen 1065 GLEVKVKFGG-IWKESLSEL-SGGQRSLVALS-LILAM------LKFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFTH 1135 (1174)
T ss_pred ceEEEEEeCc-cHHHHHHHh-cCchHHHHHHH-HHHHH------HcCCCCceeehhhhHHhhcchhhhhHHHHHHhhCCC
Confidence 3555555554 344455555 45544444421 11222 335566799999999999999999999999888889
Q ss_pred CcEEEEee
Q 028826 108 RRTGLFSA 115 (203)
Q Consensus 108 ~q~i~~SA 115 (203)
.|+|++|=
T Consensus 1136 sQFIVVSL 1143 (1174)
T KOG0933|consen 1136 SQFIVVSL 1143 (1174)
T ss_pred CeEEEEEc
Confidence 99999985
No 304
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=68.68 E-value=22 Score=30.14 Aligned_cols=69 Identities=12% Similarity=0.163 Sum_probs=52.2
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
.+|++.|..=+..+.-.++.+ ++...-++|..+.......+ .++.++|+|+|-- - . +.+|...++
T Consensus 303 ~iVF~~t~~tt~~la~~L~~l-----g~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDV-----a-S-RGLDip~Vd 370 (476)
T KOG0330|consen 303 VIVFCNTCNTTRFLALLLRNL-----GFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDV-----A-S-RGLDIPHVD 370 (476)
T ss_pred EEEEEeccchHHHHHHHHHhc-----CcceecccchhhHHHHHHHHHHHhccCCcEEEecch-----h-c-ccCCCCCce
Confidence 477888887777777777776 78888899988877665544 3478999999962 2 2 689999999
Q ss_pred EEEE
Q 028826 79 ILVL 82 (203)
Q Consensus 79 ~lVi 82 (203)
++|=
T Consensus 371 ~VVN 374 (476)
T KOG0330|consen 371 VVVN 374 (476)
T ss_pred EEEe
Confidence 8873
No 305
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=68.57 E-value=26 Score=31.93 Aligned_cols=24 Identities=8% Similarity=0.129 Sum_probs=19.9
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhc
Q 028826 2 GMIISPTRELSAQIYHVAQPFIST 25 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~ 25 (203)
|+|++.+|+-|...++.+.++.+.
T Consensus 517 amvv~~sr~~a~~~~~~l~~~~~~ 540 (667)
T TIGR00348 517 AMVVAISRYACVEEKNALDEELNE 540 (667)
T ss_pred eeEEEecHHHHHHHHHHHHhhccc
Confidence 789999999999888888877543
No 306
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=68.40 E-value=35 Score=28.67 Aligned_cols=68 Identities=19% Similarity=0.218 Sum_probs=50.4
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHH---hCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIE---EEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~---~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
++|.+.|.--|+-+...++.+ ++++++++|-....+....|. .+...|+|+|--. . +.+|.-.|+
T Consensus 257 imIFvnttr~cQ~l~~~l~~l-----e~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVA------s-RGLDIP~V~ 324 (442)
T KOG0340|consen 257 IMIFVNTTRECQLLSMTLKNL-----EVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVA------S-RGLDIPTVE 324 (442)
T ss_pred EEEEeehhHHHHHHHHHHhhh-----ceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechh------h-cCCCCCcee
Confidence 456666655566566666665 899999999988888777663 3678999999622 2 689999999
Q ss_pred EEE
Q 028826 79 ILV 81 (203)
Q Consensus 79 ~lV 81 (203)
++|
T Consensus 325 LVv 327 (442)
T KOG0340|consen 325 LVV 327 (442)
T ss_pred EEE
Confidence 887
No 307
>PRK10869 recombination and repair protein; Provisional
Probab=68.37 E-value=6.6 Score=34.85 Aligned_cols=85 Identities=11% Similarity=0.033 Sum_probs=53.2
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhc
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLA 154 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~ 154 (203)
.+..++|+||.|.=++......+..++..+....|+++.| ..+.+.. +......+.-...
T Consensus 451 ~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iT--H~~~~~~----~ad~~~~v~k~~~-------------- 510 (553)
T PRK10869 451 METPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVT--HLPQVAG----CGHQHFFVSKETD-------------- 510 (553)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEe--cCHHHHH----hCCEEEEEecccc--------------
Confidence 3578999999999888888888888888887677766544 3433332 2222222221111
Q ss_pred cCCCCCceeEEEEEcCCCCcHHHHHHHHh
Q 028826 155 SSKTPLGLHLEYLECESDKKPSQLVDLLI 183 (203)
Q Consensus 155 ~~~~~~~i~~~~~~~~~~~k~~~l~~ll~ 183 (203)
...-.-....++.++++.-+..++.
T Consensus 511 ----~~~t~s~i~~L~~~~R~~EiARMl~ 535 (553)
T PRK10869 511 ----GGMTETHMQPLDKKARLQELARLLG 535 (553)
T ss_pred ----CCeeeEEEEECChhHHHHHHHHHhC
Confidence 1112233444678889999988884
No 308
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=68.13 E-value=3.9 Score=37.36 Aligned_cols=39 Identities=26% Similarity=0.311 Sum_probs=26.6
Q ss_pred CCeEEEeccHHHHHHHHh-CCCccCCCccEEEEcchhHhhh
Q 028826 51 GANLLIGTPGRLYDIMER-MDVLDFRNLVILVLDEADRLLD 90 (203)
Q Consensus 51 ~~~ilV~Tp~~l~~~~~~-~~~~~l~~v~~lViDEad~l~~ 90 (203)
.+||||+.-.-|.+---+ .-.+++++ .++||||||-+.+
T Consensus 195 ~advIi~pYnyl~dp~~r~~~~~~l~~-~ivI~DEAHNL~d 234 (705)
T TIGR00604 195 FANIVLLPYQYLLDPKIRSAVSIELKD-SIVIFDEAHNLDN 234 (705)
T ss_pred cCCEEEechHHhcCHHHHHHhhccccc-CEEEEECccchHH
Confidence 489999988777543222 01234555 8999999999865
No 309
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=68.11 E-value=7.9 Score=31.82 Aligned_cols=37 Identities=22% Similarity=0.323 Sum_probs=27.4
Q ss_pred CccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEE
Q 028826 76 NLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLF 113 (203)
Q Consensus 76 ~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~ 113 (203)
.++++|+||||.|-.. -...++++......+..+++.
T Consensus 131 ~fKlvILDEADaMT~~-AQnALRRviek~t~n~rF~ii 167 (360)
T KOG0990|consen 131 AFKLVILDEADAMTRD-AQNALRRVIEKYTANTRFATI 167 (360)
T ss_pred ceeEEEecchhHhhHH-HHHHHHHHHHHhccceEEEEe
Confidence 6899999999998533 455667788888766666644
No 310
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=68.02 E-value=13 Score=26.16 Aligned_cols=46 Identities=20% Similarity=0.235 Sum_probs=29.1
Q ss_pred CCCccEEEEcchhHhhhhc----------hHHHHHHHHHhCCCCCcEEEEeeecCh
Q 028826 74 FRNLVILVLDEADRLLDMG----------FQKQISYIISRLPKLRRTGLFSATQTE 119 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~----------~~~~~~~il~~~~~~~q~i~~SAT~~~ 119 (203)
-.+..++|+||++.+.+.. ....+..+.....+....+++.+..++
T Consensus 83 ~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~ 138 (165)
T cd01120 83 RGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPS 138 (165)
T ss_pred CCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCC
Confidence 4578899999999886442 235555666666544555555555443
No 311
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=67.78 E-value=25 Score=29.33 Aligned_cols=66 Identities=17% Similarity=0.155 Sum_probs=42.3
Q ss_pred HHHHHHHhCCCccCCCccEEEEcchhHhhhhchHHHHHHHHHhCC-CCCcEEEEeeecChhHHHHHHh
Q 028826 61 RLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSATQTEAVEELSKA 127 (203)
Q Consensus 61 ~l~~~~~~~~~~~l~~v~~lViDEad~l~~~~~~~~~~~il~~~~-~~~q~i~~SAT~~~~v~~~~~~ 127 (203)
.|+..++. +.-..+---++|+||.|.+........+.+++..-. ....+++++-|-.-++.+++++
T Consensus 123 ~lL~~L~~-~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEK 189 (408)
T KOG2228|consen 123 KLLEALKK-GDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEK 189 (408)
T ss_pred HHHHHHhc-CCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHH
Confidence 34555554 333334446899999998877766777777776653 3456777777766556665554
No 312
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=66.19 E-value=11 Score=27.97 Aligned_cols=39 Identities=10% Similarity=0.171 Sum_probs=24.0
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEE
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLF 113 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~ 113 (203)
...-+++||||+|.|-... ...+...++..++..-+++.
T Consensus 94 ~~~~kviiide~~~l~~~~-~~~Ll~~le~~~~~~~~il~ 132 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAA-ANALLKTLEEPPPNTLFILI 132 (188)
T ss_pred cCCeEEEEEechhhhCHHH-HHHHHHHhcCCCCCeEEEEE
Confidence 4678899999999985432 33444445554444444444
No 313
>PRK07413 hypothetical protein; Validated
Probab=65.79 E-value=15 Score=30.93 Aligned_cols=53 Identities=17% Similarity=0.204 Sum_probs=43.7
Q ss_pred CCccEEEEcchhHhhhhch--HHHHHHHHHhCCCCCcEEEEeee-cChhHHHHHHh
Q 028826 75 RNLVILVLDEADRLLDMGF--QKQISYIISRLPKLRRTGLFSAT-QTEAVEELSKA 127 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~--~~~~~~il~~~~~~~q~i~~SAT-~~~~v~~~~~~ 127 (203)
...+++|+||+-..++.|+ .+++..+++.-|...-+|+..-. .|+++.++++.
T Consensus 304 g~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVLTGR~~ap~~lie~ADl 359 (382)
T PRK07413 304 GLYKTIILDELNPTVDLELLPVEPIVQTLLRKPRDTEVIITGRCKNQPAYFDLASV 359 (382)
T ss_pred CCCCEEEEechHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHhCch
Confidence 5678999999998888885 55788888888888888888887 88888887773
No 314
>PRK08116 hypothetical protein; Validated
Probab=65.64 E-value=67 Score=25.56 Aligned_cols=71 Identities=15% Similarity=0.199 Sum_probs=39.9
Q ss_pred CCCeEEEeccHHHHHHHHhC----C------Cc-cCCCccEEEEcchhH--hhhhchHHHHHHHHHhC-CCCCcEEEEee
Q 028826 50 EGANLLIGTPGRLYDIMERM----D------VL-DFRNLVILVLDEADR--LLDMGFQKQISYIISRL-PKLRRTGLFSA 115 (203)
Q Consensus 50 ~~~~ilV~Tp~~l~~~~~~~----~------~~-~l~~v~~lViDEad~--l~~~~~~~~~~~il~~~-~~~~q~i~~SA 115 (203)
.+..+++.+...++..+... . .+ .+.+.++||+||++. .-++. ...+..++... .....+|+.|.
T Consensus 141 ~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~~t~~~-~~~l~~iin~r~~~~~~~IiTsN 219 (268)
T PRK08116 141 KGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGAERDTEWA-REKVYNIIDSRYRKGLPTIVTTN 219 (268)
T ss_pred cCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccCCCCCHHH-HHHHHHHHHHHHHCCCCEEEECC
Confidence 46677777766665554320 0 01 267889999999853 33332 44455566543 33455666655
Q ss_pred ecChhH
Q 028826 116 TQTEAV 121 (203)
Q Consensus 116 T~~~~v 121 (203)
.-|.++
T Consensus 220 ~~~~eL 225 (268)
T PRK08116 220 LSLEEL 225 (268)
T ss_pred CCHHHH
Confidence 444443
No 315
>PHA02533 17 large terminase protein; Provisional
Probab=65.63 E-value=25 Score=31.08 Aligned_cols=103 Identities=17% Similarity=0.193 Sum_probs=52.1
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
+++++|+++-|..+.+.++.+....|.+.-..+..... ..-.+ .++..|-+.|.+. +...=.+..+++
T Consensus 107 v~i~A~~~~QA~~vF~~ik~~ie~~P~l~~~~i~~~~~---~~I~l-~NGS~I~~lss~~--------~t~rG~~~~~li 174 (534)
T PHA02533 107 VGILAHKASMAAEVLDRTKQAIELLPDFLQPGIVEWNK---GSIEL-ENGSKIGAYASSP--------DAVRGNSFAMIY 174 (534)
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHhCHHHhhcceeecCc---cEEEe-CCCCEEEEEeCCC--------CccCCCCCceEE
Confidence 57889999999999888887766554321111110000 00011 3455565544321 112223567999
Q ss_pred EcchhHhhhh-chHHHHHHHHHhCCCCCcEEEEeeec
Q 028826 82 LDEADRLLDM-GFQKQISYIISRLPKLRRTGLFSATQ 117 (203)
Q Consensus 82 iDEad~l~~~-~~~~~~~~il~~~~~~~q~i~~SAT~ 117 (203)
+||++..-+. .....+...+..- ...+++++|+.-
T Consensus 175 iDE~a~~~~~~e~~~ai~p~lasg-~~~r~iiiSTp~ 210 (534)
T PHA02533 175 IDECAFIPNFIDFWLAIQPVISSG-RSSKIIITSTPN 210 (534)
T ss_pred EeccccCCCHHHHHHHHHHHHHcC-CCceEEEEECCC
Confidence 9999965332 1222233333331 224566666554
No 316
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=65.26 E-value=7.6 Score=34.48 Aligned_cols=84 Identities=12% Similarity=0.096 Sum_probs=53.2
Q ss_pred CccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhcc
Q 028826 76 NLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLAS 155 (203)
Q Consensus 76 ~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~ 155 (203)
+.+++|+||.+.-++......+..++..+....|+++.|-- +. .+. + .+...+ +...
T Consensus 462 ~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~--~~---~~~-~-ad~~~~-l~k~--------------- 518 (563)
T TIGR00634 462 AVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHL--PQ---VAA-H-ADAHFK-VEKE--------------- 518 (563)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEECh--HH---HHH-h-cCeEEE-EEEc---------------
Confidence 46899999999988888788888888888767777776543 22 222 2 333322 2222
Q ss_pred CCCCCceeEEEEEcCCCCcHHHHHHHHh
Q 028826 156 SKTPLGLHLEYLECESDKKPSQLVDLLI 183 (203)
Q Consensus 156 ~~~~~~i~~~~~~~~~~~k~~~l~~ll~ 183 (203)
. ....-.-....+++++++.-+..++.
T Consensus 519 ~-~~~~t~s~i~~L~~~~r~~EiArml~ 545 (563)
T TIGR00634 519 G-LDGRTATRVRPLSGEERVAELARMLA 545 (563)
T ss_pred c-CCCcEEEEEEECCccHHHHHHHHHhC
Confidence 0 11112334445688889999998884
No 317
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=65.22 E-value=7.7 Score=29.12 Aligned_cols=54 Identities=9% Similarity=0.191 Sum_probs=30.7
Q ss_pred CccEEEEcchhHhhhhc-h----HHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcC
Q 028826 76 NLVILVLDEADRLLDMG-F----QKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGL 129 (203)
Q Consensus 76 ~v~~lViDEad~l~~~~-~----~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l 129 (203)
.=.++|+|||+..+... . .+.....+....+..--+++..--+..+...++...
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~~~id~~ir~lv 137 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSPSQIDKFIRDLV 137 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-GGGB-HHHHCCE
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCHHHHhHHHHHHH
Confidence 45799999999988543 2 123335555555555667776666666777666543
No 318
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=64.68 E-value=44 Score=30.19 Aligned_cols=39 Identities=28% Similarity=0.364 Sum_probs=29.7
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeee
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 116 (203)
.-..+++||||+-.+ + .+.+..+++.++...++|+++-.
T Consensus 263 ~l~~dvlIvDEaSMv-d---~~lm~~ll~al~~~~rlIlvGD~ 301 (615)
T PRK10875 263 PLHLDVLVVDEASMV-D---LPMMARLIDALPPHARVIFLGDR 301 (615)
T ss_pred CCCCCeEEEChHhcc-c---HHHHHHHHHhcccCCEEEEecch
Confidence 445689999999754 3 45667788889988888887654
No 319
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=64.41 E-value=32 Score=31.28 Aligned_cols=23 Identities=22% Similarity=0.530 Sum_probs=20.9
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhh
Q 028826 2 GMIISPTRELSAQIYHVAQPFIS 24 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~ 24 (203)
.|||+|+.++|.|+++.++.+.+
T Consensus 60 vLIVt~~~~~A~~l~~dL~~~~~ 82 (652)
T PRK05298 60 TLVLAHNKTLAAQLYSEFKEFFP 82 (652)
T ss_pred EEEEECCHHHHHHHHHHHHHhcC
Confidence 68999999999999999988853
No 320
>PRK07952 DNA replication protein DnaC; Validated
Probab=64.36 E-value=69 Score=25.21 Aligned_cols=107 Identities=21% Similarity=0.340 Sum_probs=56.9
Q ss_pred HHHHHHHhhhcCC-CceEEEEEcC--cchHHHHH----HHHhCCCeEEEeccHHHHHHHHhC---CCc-------cCCCc
Q 028826 15 IYHVAQPFISTLP-DVKSMLLVGG--VEVKADVK----KIEEEGANLLIGTPGRLYDIMERM---DVL-------DFRNL 77 (203)
Q Consensus 15 i~~~~~~l~~~~~-~i~~~~~~~g--~~~~~~~~----~l~~~~~~ilV~Tp~~l~~~~~~~---~~~-------~l~~v 77 (203)
....+.+++.... +.....++|+ .....-.. .+...+..+++.|...+...++.. ... .+.++
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~~~ 163 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLSNV 163 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhccC
Confidence 4445555544321 2345566664 33333322 233456788888877776544420 111 25689
Q ss_pred cEEEEcchhHhhhhchHH-HHHHHHHhC-CCCCcEEEEeeecChhH
Q 028826 78 VILVLDEADRLLDMGFQK-QISYIISRL-PKLRRTGLFSATQTEAV 121 (203)
Q Consensus 78 ~~lViDEad~l~~~~~~~-~~~~il~~~-~~~~q~i~~SAT~~~~v 121 (203)
++|||||++..-...+.. .+..|+..- .....+++.|---+.++
T Consensus 164 dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l 209 (244)
T PRK07952 164 DLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEM 209 (244)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHH
Confidence 999999998875433333 445555543 33455666554433333
No 321
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=64.32 E-value=30 Score=32.16 Aligned_cols=53 Identities=15% Similarity=0.068 Sum_probs=37.7
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHh-CCCeEEEecc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEE-EGANLLIGTP 59 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~-~~~~ilV~Tp 59 (203)
+||.+.|.+-+..+...+.+. ++++..++|+....+....... ....|+|+|-
T Consensus 431 vLIf~~t~~~se~l~~~L~~~-----gi~~~~L~~~~~~~e~~~i~~ag~~g~VlIATd 484 (790)
T PRK09200 431 VLIGTGSIEQSETFSKLLDEA-----GIPHNLLNAKNAAKEAQIIAEAGQKGAVTVATN 484 (790)
T ss_pred EEEEeCcHHHHHHHHHHHHHC-----CCCEEEecCCccHHHHHHHHHcCCCCeEEEEcc
Confidence 799999999998888877764 7888999988654433222222 2458888884
No 322
>PRK08181 transposase; Validated
Probab=64.24 E-value=21 Score=28.58 Aligned_cols=70 Identities=19% Similarity=0.134 Sum_probs=40.9
Q ss_pred hCCCeEEEeccHHHHHHHHh---CCCc-----cCCCccEEEEcchhHhhhhc-hHHHHHHHHHhCCCCCcEEEEeeecCh
Q 028826 49 EEGANLLIGTPGRLYDIMER---MDVL-----DFRNLVILVLDEADRLLDMG-FQKQISYIISRLPKLRRTGLFSATQTE 119 (203)
Q Consensus 49 ~~~~~ilV~Tp~~l~~~~~~---~~~~-----~l~~v~~lViDEad~l~~~~-~~~~~~~il~~~~~~~q~i~~SAT~~~ 119 (203)
..+..+++.|...|...+.. .+.. .+.+.++||+||.+...... -...+..++........++ +++.+++
T Consensus 132 ~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~I-iTSN~~~ 210 (269)
T PRK08181 132 ENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSIL-ITANQPF 210 (269)
T ss_pred HcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEE-EEcCCCH
Confidence 45778888887777665532 0111 25678999999998764322 2345556665543344444 4444443
No 323
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=63.68 E-value=11 Score=31.32 Aligned_cols=39 Identities=23% Similarity=0.207 Sum_probs=26.2
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEe
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~S 114 (203)
..-+++||||||.|-... ...+...++..+....++++|
T Consensus 140 g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILIS 178 (351)
T ss_pred CCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 467899999999985443 344555566655566666664
No 324
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=63.38 E-value=15 Score=25.05 Aligned_cols=30 Identities=23% Similarity=0.237 Sum_probs=19.4
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhC
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRL 104 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~ 104 (203)
..+..++++||+|.+... ....+..++...
T Consensus 82 ~~~~~~lilDe~~~~~~~-~~~~~~~~i~~~ 111 (151)
T cd00009 82 KAKPGVLFIDEIDSLSRG-AQNALLRVLETL 111 (151)
T ss_pred cCCCeEEEEeChhhhhHH-HHHHHHHHHHhc
Confidence 456789999999987322 344455555554
No 325
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=63.11 E-value=12 Score=30.36 Aligned_cols=40 Identities=18% Similarity=0.271 Sum_probs=27.3
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEee
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SA 115 (203)
..-+++|+||+|.+-+ .....+..++...+....+++.+.
T Consensus 124 ~~~~vlilDe~~~l~~-~~~~~L~~~le~~~~~~~~Il~~~ 163 (337)
T PRK12402 124 ADYKTILLDNAEALRE-DAQQALRRIMEQYSRTCRFIIATR 163 (337)
T ss_pred CCCcEEEEeCcccCCH-HHHHHHHHHHHhccCCCeEEEEeC
Confidence 4567999999998743 345566777777766666665443
No 326
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=63.08 E-value=18 Score=27.33 Aligned_cols=119 Identities=17% Similarity=0.175 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhC--CCccCCCccEEEEcchh
Q 028826 9 RELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM--DVLDFRNLVILVLDEAD 86 (203)
Q Consensus 9 reLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~--~~~~l~~v~~lViDEad 86 (203)
+++|..+...+.+....- +.-+..+.||.+.. .+++.+... ..++.+++.++.+||--
T Consensus 3 ~~~a~~i~~~i~~~i~~~-~~~~i~LsgGstp~-------------------~~y~~L~~~~~~~i~w~~v~~~~~DEr~ 62 (199)
T PF01182_consen 3 QAVAEAIAEAIEEAIAER-GRAVIALSGGSTPK-------------------PLYQELAKLHKERIDWSRVHFFNVDERV 62 (199)
T ss_dssp HHHHHHHHHHHHHHHHHC-SSEEEEE--SCTHH-------------------HHHHHHHHHHHTCSCGGGEEEEESEEES
T ss_pred HHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHHH-------------------HHHHHHhhhccccCChhHeEEEeCcccc
Confidence 456666666666655443 44555666665443 333333320 35888999999999965
Q ss_pred Hhhh--hchHHHHH-HHHHhCC-CCCcEEEEee---ecChhHHH---HHHhcCC-----CCeEEEeccCccccccc
Q 028826 87 RLLD--MGFQKQIS-YIISRLP-KLRRTGLFSA---TQTEAVEE---LSKAGLR-----NPVRIEVRAESKSHHAS 147 (203)
Q Consensus 87 ~l~~--~~~~~~~~-~il~~~~-~~~q~i~~SA---T~~~~v~~---~~~~~l~-----~~~~i~~~~~~~~~~~~ 147 (203)
.-.+ ..+...++ .++..++ +..|+.-+-. +....... .+..... ....+..+.+.++|-++
T Consensus 63 v~~~~~~Sn~~~~~~~l~~~~~i~~~~i~~~~~~~~~~~~~~~~y~~~l~~~~~~~~~p~~Dl~lLG~G~DGH~as 138 (199)
T PF01182_consen 63 VPPDDPDSNYRMLREHLLDPLPIPPENIHPIDGEADDPEEAAERYEQELASLGGEAGFPGFDLVLLGMGEDGHTAS 138 (199)
T ss_dssp STTTSTTSHHHHHHHHTGGGSGGGGGGEETSSTTTSSHHHHHHHHHHHHHHHSSSEECESBSEEEEE--TTS-BTT
T ss_pred cCCCCCccHHHHHHHHhhccCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHhccccCCCceeEEEeccccCCCeec
Confidence 2121 12334443 4555553 1224443332 11122222 3333333 25566666666666666
No 327
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=62.93 E-value=40 Score=26.53 Aligned_cols=67 Identities=10% Similarity=0.129 Sum_probs=42.4
Q ss_pred HHHHHHhhhcCCCceEEEEEcCc---chHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEEEcc
Q 028826 16 YHVAQPFISTLPDVKSMLLVGGV---EVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDE 84 (203)
Q Consensus 16 ~~~~~~l~~~~~~i~~~~~~~g~---~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lViDE 84 (203)
++=++++.+.. ++++...-... +..+..+.+.+.++++||++...+.+.+.. -.-...+.+++++|-
T Consensus 20 ~~G~~~~~~~~-gv~~~~~e~~~~~~~~~~~i~~~~~~g~dlIi~~g~~~~~~~~~-vA~~~p~~~F~~~d~ 89 (258)
T cd06353 20 DEGRKAAEKAL-GVEVTYVENVPEGADAERVLRELAAQGYDLIFGTSFGFMDAALK-VAKEYPDVKFEHCSG 89 (258)
T ss_pred HHHHHHHHHhc-CCeEEEEecCCchHhHHHHHHHHHHcCCCEEEECchhhhHHHHH-HHHHCCCCEEEECCC
Confidence 34444554444 77766655542 244555566668999999999888877654 222335778888764
No 328
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=62.39 E-value=36 Score=31.55 Aligned_cols=53 Identities=15% Similarity=0.100 Sum_probs=37.6
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHh-CCCeEEEecc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEE-EGANLLIGTP 59 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~-~~~~ilV~Tp 59 (203)
+||.+.|++.+..+...+.+. ++++..++|.....+....... ....|+|+|-
T Consensus 427 vLIft~s~~~se~ls~~L~~~-----gi~~~~L~a~~~~~E~~ii~~ag~~g~VlIATd 480 (762)
T TIGR03714 427 VLLITGSVEMSEIYSELLLRE-----GIPHNLLNAQNAAKEAQIIAEAGQKGAVTVATS 480 (762)
T ss_pred EEEEECcHHHHHHHHHHHHHC-----CCCEEEecCCChHHHHHHHHHcCCCCeEEEEcc
Confidence 799999999988888877765 7888888888665443222222 2347888884
No 329
>PF15586 Imm47: Immunity protein 47
Probab=61.83 E-value=9.3 Score=26.43 Aligned_cols=50 Identities=20% Similarity=0.204 Sum_probs=32.4
Q ss_pred CCCeEEEeccHHHHHHHHhCCCccCCCccEEEEcchhHhhhhchHHHHHHHHHhC
Q 028826 50 EGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRL 104 (203)
Q Consensus 50 ~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lViDEad~l~~~~~~~~~~~il~~~ 104 (203)
.-.++.|+||+.|.+...+ +.+ +-.=.+||++|-|.= .-...+++++...
T Consensus 43 d~F~v~VcTP~wL~~~~~~-~~~-~~gr~~LIv~~yd~~---~I~~~i~~~i~~c 92 (116)
T PF15586_consen 43 DYFQVFVCTPKWLSKNCWK-PGI-LWGRHMLIVEEYDYD---EIKKTIERIIESC 92 (116)
T ss_pred ceEEEEEEcHHHHHHhhcC-Ccc-eeccceEEEecCCHH---HHHHHHHHHHHHc
Confidence 3479999999999987776 321 233458898887521 1344555555555
No 330
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=61.78 E-value=34 Score=21.86 Aligned_cols=54 Identities=11% Similarity=0.149 Sum_probs=28.6
Q ss_pred EEEEcCcHH-HHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccH
Q 028826 2 GMIISPTRE-LSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPG 60 (203)
Q Consensus 2 alil~Ptre-La~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~ 60 (203)
++++||+.- ....+...+++..+.. ++....-..+. . +.... ..++|++++|+.
T Consensus 3 ilivC~~G~~tS~~l~~~i~~~~~~~-~i~~~v~~~~~--~-~~~~~-~~~~Dliist~~ 57 (89)
T cd05566 3 ILVACGTGVATSTVVASKVKELLKEN-GIDVKVEQCKI--A-EVPSL-LDDADLIVSTTK 57 (89)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHHC-CCceEEEEecH--H-Hhhcc-cCCCcEEEEcCC
Confidence 678888843 3344555555555544 44332221111 1 11111 257999999995
No 331
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=61.75 E-value=4.3 Score=37.90 Aligned_cols=76 Identities=9% Similarity=0.068 Sum_probs=44.1
Q ss_pred cEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCCCceeEEEEEcCCCCcHHHHHHHHhc--CC
Q 028826 109 RTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPSQLVDLLIK--NK 186 (203)
Q Consensus 109 q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~--~~ 186 (203)
...++|.|...+..+|.+.|--+-+.|..... ....... ..++.+..+|..++.+-+.. ..
T Consensus 386 kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp----------------~~R~d~~-d~iy~t~~~K~~Aii~ei~~~~~~ 448 (908)
T PRK13107 386 KLAGMTGTADTEAFEFQHIYGLDTVVVPTNRP----------------MVRKDMA-DLVYLTADEKYQAIIKDIKDCRER 448 (908)
T ss_pred HhhcccCCChHHHHHHHHHhCCCEEECCCCCC----------------ccceeCC-CcEEeCHHHHHHHHHHHHHHHHHc
Confidence 45667777776666666655444333322111 1111111 12234556788777777753 36
Q ss_pred CCeEEEEeccCCccc
Q 028826 187 SKKIIMYVQHGNFSE 201 (203)
Q Consensus 187 ~~~~lIF~ns~~~~e 201 (203)
++|+||||+|.+.+|
T Consensus 449 GrpVLV~t~sv~~se 463 (908)
T PRK13107 449 GQPVLVGTVSIEQSE 463 (908)
T ss_pred CCCEEEEeCcHHHHH
Confidence 789999999988765
No 332
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=61.62 E-value=28 Score=27.97 Aligned_cols=39 Identities=26% Similarity=0.228 Sum_probs=26.9
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEe
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~S 114 (203)
..-+++++||+|.+... ....+..++...+....+++.+
T Consensus 101 ~~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 101 APFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CCceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEe
Confidence 35679999999988543 3455666777766666666654
No 333
>PRK14974 cell division protein FtsY; Provisional
Probab=61.54 E-value=74 Score=26.38 Aligned_cols=55 Identities=15% Similarity=0.107 Sum_probs=41.1
Q ss_pred CCccEEEEcchhHhh-hhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcC
Q 028826 75 RNLVILVLDEADRLL-DMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGL 129 (203)
Q Consensus 75 ~~v~~lViDEad~l~-~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l 129 (203)
.+.+++++|.+.++- +......++.+.+...+..-+++++|+..++..+.++.|.
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~ 276 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFN 276 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHH
Confidence 346799999998875 4456778888887777777788889988777666555553
No 334
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=61.29 E-value=24 Score=28.38 Aligned_cols=63 Identities=19% Similarity=0.214 Sum_probs=36.0
Q ss_pred CCeEEEeccHHHHH------HHHh---CCCcc--CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEe
Q 028826 51 GANLLIGTPGRLYD------IMER---MDVLD--FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (203)
Q Consensus 51 ~~~ilV~Tp~~l~~------~~~~---~~~~~--l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~S 114 (203)
.++++.-+|..... .++. ..... ....+++++||||.|-.. -...+...+..-+.+..+++.+
T Consensus 73 ~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 73 HPDFLELNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred CCceEEecccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEc
Confidence 37888888765332 2221 02222 367899999999999553 2344444444444444444444
No 335
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=61.18 E-value=35 Score=21.65 Aligned_cols=52 Identities=6% Similarity=0.121 Sum_probs=29.1
Q ss_pred EEEEcCcHH-HHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccH
Q 028826 2 GMIISPTRE-LSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPG 60 (203)
Q Consensus 2 alil~Ptre-La~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~ 60 (203)
++++||+.- -+.-+...++++.+.. ++....-.. +..+. ...++|++++|..
T Consensus 2 ilvvC~~G~~tS~ll~~kl~~~f~~~-~i~~~~~~~--~~~~~----~~~~~DlIisT~~ 54 (86)
T cd05563 2 ILAVCGSGLGSSLMLKMNVEKVLKEL-GIEAEVEHT--DLGSA----KASSADIIVTSKD 54 (86)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHHC-CCcEEEEEe--ccccc----CCCCCCEEEEchh
Confidence 688999843 4444555666665544 444322222 11111 1257899999994
No 336
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=60.80 E-value=11 Score=27.98 Aligned_cols=42 Identities=24% Similarity=0.296 Sum_probs=30.3
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCC-CcEEEEee
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKL-RRTGLFSA 115 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~-~q~i~~SA 115 (203)
..+-+++++||.+.-++......+..++..+.+. .++++.|-
T Consensus 114 ~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 114 IKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 3567899999999988887777776666665433 66666654
No 337
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=60.51 E-value=15 Score=34.55 Aligned_cols=43 Identities=14% Similarity=0.162 Sum_probs=26.2
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecCh
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~ 119 (203)
.+-+++||||||.|-... ...+.+.++.-|....+|+. +|-+.
T Consensus 118 gk~KViIIDEAh~LT~eA-qNALLKtLEEPP~~vrFILa-TTe~~ 160 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSS-FNALLKTLEEPPEHVKFLLA-TTDPQ 160 (944)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhccCCCeEEEEE-CCCch
Confidence 467899999999984433 34444555555555555554 44443
No 338
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=60.31 E-value=12 Score=33.01 Aligned_cols=40 Identities=15% Similarity=0.204 Sum_probs=28.0
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEe
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~S 114 (203)
...-+++||||||.|-... ...+...+...|....+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 4678999999999885443 445556666667677766665
No 339
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=60.11 E-value=19 Score=27.81 Aligned_cols=54 Identities=30% Similarity=0.388 Sum_probs=42.1
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHh
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~ 127 (203)
.++-+.+|+||.=.=+|-.....+..++.++++.-..++||+-.=++++.+++.
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDr 202 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDR 202 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhhe
Confidence 567889999997554555577778888888887778888988877777777764
No 340
>PRK10536 hypothetical protein; Provisional
Probab=59.96 E-value=14 Score=29.43 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=28.3
Q ss_pred cEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeee
Q 028826 78 VILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (203)
Q Consensus 78 ~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 116 (203)
.++|+|||..+ -...+..++..++.+..+++.+-.
T Consensus 178 ~~vIvDEaqn~----~~~~~k~~ltR~g~~sk~v~~GD~ 212 (262)
T PRK10536 178 AVVILDEAQNV----TAAQMKMFLTRLGENVTVIVNGDI 212 (262)
T ss_pred CEEEEechhcC----CHHHHHHHHhhcCCCCEEEEeCCh
Confidence 79999999876 236888899999988888877543
No 341
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=59.88 E-value=42 Score=30.20 Aligned_cols=40 Identities=10% Similarity=0.089 Sum_probs=26.1
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEe
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~S 114 (203)
..+-+++||||+|.|-... ...+...++..+....+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 4677899999999985433 333444455555666666654
No 342
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=59.82 E-value=59 Score=26.30 Aligned_cols=70 Identities=11% Similarity=0.268 Sum_probs=45.5
Q ss_pred HHHHHHHhhhcCCCceEEEEEcCc----chHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEEEcch
Q 028826 15 IYHVAQPFISTLPDVKSMLLVGGV----EVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEA 85 (203)
Q Consensus 15 i~~~~~~l~~~~~~i~~~~~~~g~----~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lViDEa 85 (203)
.++=+.++.+.++++++...-... ......+.+.+.++++||++-..+.+.+.. -.-+..++.++++|-.
T Consensus 21 ~~~G~~~~~~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~g~dlIi~~g~~~~~~~~~-vA~~yPd~~F~~~d~~ 94 (306)
T PF02608_consen 21 AYEGLKRAEKELDGIEIIYVENVPETDADYEEAIRQLADQGYDLIIGHGFEYSDALQE-VAKEYPDTKFIIIDGY 94 (306)
T ss_dssp HHHHHHHHHHHCTTEEEEEEES-S-TCHHHHHHHHHHHHTT-SEEEEESGGGHHHHHH-HHTC-TTSEEEEESS-
T ss_pred HHHHHHHHHHHcCCceEEEEecCCccHHHHHHHHHHHHHcCCCEEEEccHHHHHHHHH-HHHHCCCCEEEEEecC
Confidence 344455555544577777776655 455666677778999999998888777665 3334567888998863
No 343
>PRK04132 replication factor C small subunit; Provisional
Probab=59.45 E-value=21 Score=33.43 Aligned_cols=37 Identities=27% Similarity=0.246 Sum_probs=25.1
Q ss_pred CccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEE
Q 028826 76 NLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLF 113 (203)
Q Consensus 76 ~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~ 113 (203)
+.+++|+||||.|-.. -...+..+++..+....+++.
T Consensus 630 ~~KVvIIDEaD~Lt~~-AQnALLk~lEep~~~~~FILi 666 (846)
T PRK04132 630 SFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILS 666 (846)
T ss_pred CCEEEEEECcccCCHH-HHHHHHHHhhCCCCCeEEEEE
Confidence 4689999999998543 455666666665555554444
No 344
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=59.39 E-value=42 Score=26.06 Aligned_cols=123 Identities=15% Similarity=0.171 Sum_probs=62.7
Q ss_pred ccHHHHHHHHhCCCccCCCccEEEEcchhHhhhh----chHHHH-HHHHHhCC-CCCcEEEEeeec---ChhHHHH---H
Q 028826 58 TPGRLYDIMERMDVLDFRNLVILVLDEADRLLDM----GFQKQI-SYIISRLP-KLRRTGLFSATQ---TEAVEEL---S 125 (203)
Q Consensus 58 Tp~~l~~~~~~~~~~~l~~v~~lViDEad~l~~~----~~~~~~-~~il~~~~-~~~q~i~~SAT~---~~~v~~~---~ 125 (203)
||..+++.+.. ..++.+++.++-+||-- +.. .....+ +.++..++ ...|+..+.... ......+ +
T Consensus 39 tp~~~y~~L~~-~~i~w~~v~~f~~DER~--Vp~~~~~SN~~~~~~~Ll~~~~i~~~~i~~~~~~~~~~~~~a~~y~~~i 115 (233)
T TIGR01198 39 SPIALLEALAA-QPLDWSRIHLFLGDERY--VPLDHADSNTGLAREALLDRVAIPASNIHPMPTELSDIEEAAELYEQEL 115 (233)
T ss_pred cHHHHHHHHhh-CCCCcceEEEEEecccc--cCCCCccchHHHHHHHHhccCCCChhheeeCCCccCCHHHHHHHHHHHH
Confidence 45556665555 46888999999999943 321 133333 35566654 233454444332 1222222 2
Q ss_pred HhcCC-----CCeEEEeccCccccccc--chhhh-------hc-c---CCC-CCc----------eeEEEEEcCCCCcHH
Q 028826 126 KAGLR-----NPVRIEVRAESKSHHAS--ASSQQ-------LA-S---SKT-PLG----------LHLEYLECESDKKPS 176 (203)
Q Consensus 126 ~~~l~-----~~~~i~~~~~~~~~~~~--~~~~~-------~~-~---~~~-~~~----------i~~~~~~~~~~~k~~ 176 (203)
..... ....+..+.+.++|-++ +.... .. . ... +.. -++.++.+.+++|.+
T Consensus 116 ~~~~~~~~~p~fDl~lLGmG~DGHtASlFPg~~~l~~~~~~~~~~~~~~~~p~~RITlt~~~i~~a~~i~~lv~G~~Ka~ 195 (233)
T TIGR01198 116 AAAFQPIVFPVFDLLLLGMGPDGHTASLFPHTPALQETERLVTVLTKSPKPPHERITLTLPAINAARKVFLLIAGEEKRN 195 (233)
T ss_pred HHhhcccCCCcccEEEECCcCCccceeCCCCChhhccccceEEeecCCCCCCCCcEEecHHHHhcCCeEEEEEEChHHHH
Confidence 22221 12566666666666655 11100 00 0 000 011 144556667788999
Q ss_pred HHHHHHh
Q 028826 177 QLVDLLI 183 (203)
Q Consensus 177 ~l~~ll~ 183 (203)
.+.+++.
T Consensus 196 ~~~~~l~ 202 (233)
T TIGR01198 196 ALAEALA 202 (233)
T ss_pred HHHHHHh
Confidence 9999986
No 345
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=59.19 E-value=1.3e+02 Score=28.96 Aligned_cols=41 Identities=27% Similarity=0.331 Sum_probs=24.5
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCC-CCCcEEEEeee
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSAT 116 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~-~~~q~i~~SAT 116 (203)
..+.+||+||+|.|...+ ...+..+++... ...++++...+
T Consensus 868 r~v~IIILDEID~L~kK~-QDVLYnLFR~~~~s~SKLiLIGIS 909 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITKT-QKVLFTLFDWPTKINSKLVLIAIS 909 (1164)
T ss_pred ccceEEEeehHhhhCccH-HHHHHHHHHHhhccCCeEEEEEec
Confidence 346789999999997542 445555555432 23455444333
No 346
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=58.97 E-value=12 Score=33.91 Aligned_cols=102 Identities=13% Similarity=0.136 Sum_probs=55.2
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcC-CCceEEEEEcCcchHHHHHHHHhCC--CeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTL-PDVKSMLLVGGVEVKADVKKIEEEG--ANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~-~~i~~~~~~~g~~~~~~~~~l~~~~--~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
.++.+|.+.-+..+++++....... ++-.+..+. |..... . ..++ +-|..+|. .+.+.+.=.+.+
T Consensus 287 IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vk-Ge~I~i---~-f~nG~kstI~FaSa-------rntNsiRGqtfD 354 (738)
T PHA03368 287 IGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVK-GETISF---S-FPDGSRSTIVFASS-------HNTNGIRGQDFN 354 (738)
T ss_pred EEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeec-CcEEEE---E-ecCCCccEEEEEec-------cCCCCccCCccc
Confidence 4678888888888888888875532 111111111 211100 0 0112 24444422 111334445789
Q ss_pred EEEEcchhHhhhhchHHHHHHHHHhC-CCCCcEEEEeeecCh
Q 028826 79 ILVLDEADRLLDMGFQKQISYIISRL-PKLRRTGLFSATQTE 119 (203)
Q Consensus 79 ~lViDEad~l~~~~~~~~~~~il~~~-~~~~q~i~~SAT~~~ 119 (203)
++|+|||.-+-+.-+. .++-.+ -.++++|+.|+|-+.
T Consensus 355 LLIVDEAqFIk~~al~----~ilp~l~~~n~k~I~ISS~Ns~ 392 (738)
T PHA03368 355 LLFVDEANFIRPDAVQ----TIMGFLNQTNCKIIFVSSTNTG 392 (738)
T ss_pred EEEEechhhCCHHHHH----HHHHHHhccCccEEEEecCCCC
Confidence 9999999877443233 333222 238899999988554
No 347
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=58.45 E-value=18 Score=30.18 Aligned_cols=27 Identities=15% Similarity=0.314 Sum_probs=16.7
Q ss_pred ccEEEEcchhHhhhhchHHHHHHHHHh
Q 028826 77 LVILVLDEADRLLDMGFQKQISYIISR 103 (203)
Q Consensus 77 v~~lViDEad~l~~~~~~~~~~~il~~ 103 (203)
.-++|+||+|.+.+..-.+.+..+++.
T Consensus 139 ~~viviDE~d~l~~~~~~~~l~~l~~~ 165 (394)
T PRK00411 139 VLIVALDDINYLFEKEGNDVLYSLLRA 165 (394)
T ss_pred EEEEEECCHhHhhccCCchHHHHHHHh
Confidence 358999999999732223444555443
No 348
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=58.36 E-value=47 Score=27.33 Aligned_cols=41 Identities=17% Similarity=0.151 Sum_probs=26.9
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEee
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SA 115 (203)
...-+++|||+||.|-... ...+-.+++.-|.+..+|+.|.
T Consensus 111 ~g~~kV~iI~~ae~m~~~A-aNaLLKtLEEPp~~~~fiL~~~ 151 (319)
T PRK08769 111 YGIAQVVIVDPADAINRAA-CNALLKTLEEPSPGRYLWLISA 151 (319)
T ss_pred cCCcEEEEeccHhhhCHHH-HHHHHHHhhCCCCCCeEEEEEC
Confidence 3567999999999995543 3334445555566666666654
No 349
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=57.41 E-value=23 Score=26.62 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=24.5
Q ss_pred cEEEEcchhHhh-h----hchHHHHHHHHHhCCCC-CcEEEEeeec
Q 028826 78 VILVLDEADRLL-D----MGFQKQISYIISRLPKL-RRTGLFSATQ 117 (203)
Q Consensus 78 ~~lViDEad~l~-~----~~~~~~~~~il~~~~~~-~q~i~~SAT~ 117 (203)
-++|+||+|.+. . ..+...+..++...... ...++++++-
T Consensus 120 ~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 120 VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 799999999998 2 34666777777774332 3334454444
No 350
>COG3505 VirD4 Type IV secretory pathway, VirD4 components [Intracellular trafficking and secretion]
Probab=57.34 E-value=1.5e+02 Score=26.81 Aligned_cols=105 Identities=12% Similarity=0.161 Sum_probs=60.2
Q ss_pred CceEEEEEcCcchHHHHHHHHhCC-CeEEEeccHHHHHH-----------HHh-----CCCccCCCccEEEEcchhHhhh
Q 028826 28 DVKSMLLVGGVEVKADVKKIEEEG-ANLLIGTPGRLYDI-----------MER-----MDVLDFRNLVILVLDEADRLLD 90 (203)
Q Consensus 28 ~i~~~~~~~g~~~~~~~~~l~~~~-~~ilV~Tp~~l~~~-----------~~~-----~~~~~l~~v~~lViDEad~l~~ 90 (203)
+..+..++.|.+.. ...+..++ +.+++.+|+++... +.. ....+.+.=-++.+||...|
T Consensus 343 ~p~v~a~ts~~df~--~~dlr~~~~~v~~~~~p~~~~~~~Pli~l~~~~~i~~~la~~~~~~~~~~~vlf~LDEfp~L-- 418 (596)
T COG3505 343 NPLVAAATSGSDFD--IRDLRKKKTTVYFGLDPDRISRVKPLLRLILQQSISRNLAKKLPDPAEKYRVLFLLDEFPTL-- 418 (596)
T ss_pred ChhhhhccccCccc--HHHhhcCCceEEEEECHHHhhhhhHHHHHHHHHHHHHHHhhccCCccccccEEEEeecchhc--
Confidence 44455555555542 33344455 79999999986331 111 01112233468999999987
Q ss_pred hchHHHHHHHHHhCC-----------------------------CCCcEEEEeeecChhHHHHHHhcCCCCeEEEe
Q 028826 91 MGFQKQISYIISRLP-----------------------------KLRRTGLFSATQTEAVEELSKAGLRNPVRIEV 137 (203)
Q Consensus 91 ~~~~~~~~~il~~~~-----------------------------~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~ 137 (203)
|+.+.+...+..+. .++.+-+|=++-..+..+++...+.+.+...-
T Consensus 419 -G~L~~l~~al~~~r~yG~~~~li~Qsl~QLe~~YG~~~a~til~nc~~~~~f~~nd~~tA~~iS~~lG~~Tv~~~ 493 (596)
T COG3505 419 -GKLPDLEEALAEMRGYGIRLILIFQSLAQLEKIYGREGANTILDNCAVRIFFAPNDDETARYVSKLLGDETVKVK 493 (596)
T ss_pred -CChHHHHHHHHHhhccCceEEEEeccHHHHHHHhhhhHHHHHhhhcceEEEecCCchHHHHHHHHHhCceeEEee
Confidence 55555554444432 24555555566666777788888887665533
No 351
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=56.85 E-value=18 Score=32.96 Aligned_cols=39 Identities=10% Similarity=0.128 Sum_probs=25.3
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEe
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~S 114 (203)
.+-+++||||+|.|-... ...+..+++..+....+|+.+
T Consensus 117 gk~KV~IIDEVh~LS~~A-~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS-FNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhcCCCCcEEEEEE
Confidence 456899999999875443 344555666655555555543
No 352
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=56.85 E-value=49 Score=27.18 Aligned_cols=63 Identities=10% Similarity=0.136 Sum_probs=36.6
Q ss_pred CCeEEEeccH-------HHHHHHHhC-CCccCCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEe
Q 028826 51 GANLLIGTPG-------RLYDIMERM-DVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (203)
Q Consensus 51 ~~~ilV~Tp~-------~l~~~~~~~-~~~~l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~S 114 (203)
.||+.+..|+ .+.++.... .......-+++||||+|.|-... ...+...++.-|....+++.+
T Consensus 77 hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a-~NaLLK~LEEPp~~~~~Il~t 147 (329)
T PRK08058 77 HPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASA-ANSLLKFLEEPSGGTTAILLT 147 (329)
T ss_pred CCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHH-HHHHHHHhcCCCCCceEEEEe
Confidence 4688887774 233333220 11134567999999999985443 344555555555555556543
No 353
>PRK06921 hypothetical protein; Provisional
Probab=56.78 E-value=99 Score=24.59 Aligned_cols=89 Identities=12% Similarity=0.079 Sum_probs=46.1
Q ss_pred ceEEEEEcCcc--hHHHHHH----HHhC-CCeEEEeccHHHHHHHHhC-----CC-ccCCCccEEEEcchhH-------h
Q 028826 29 VKSMLLVGGVE--VKADVKK----IEEE-GANLLIGTPGRLYDIMERM-----DV-LDFRNLVILVLDEADR-------L 88 (203)
Q Consensus 29 i~~~~~~~g~~--~~~~~~~----l~~~-~~~ilV~Tp~~l~~~~~~~-----~~-~~l~~v~~lViDEad~-------l 88 (203)
.....++|... ...-... +... +..++..|...+...+... .. -.+.++++|||||++. .
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl~~~~~g~e~~ 196 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDLFKPVNGKPRA 196 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccccccCCCccC
Confidence 35566776433 3333332 2233 6788888776654444220 01 1256789999999954 1
Q ss_pred hhhchHHHHHHHHHhCCC-CCcEEEEeeecCh
Q 028826 89 LDMGFQKQISYIISRLPK-LRRTGLFSATQTE 119 (203)
Q Consensus 89 ~~~~~~~~~~~il~~~~~-~~q~i~~SAT~~~ 119 (203)
-++ ....+..++..... ...+ ++|+.+++
T Consensus 197 t~~-~~~~lf~iin~R~~~~k~t-Iitsn~~~ 226 (266)
T PRK06921 197 TEW-QIEQMYSVLNYRYLNHKPI-LISSELTI 226 (266)
T ss_pred CHH-HHHHHHHHHHHHHHCCCCE-EEECCCCH
Confidence 112 23345555554432 3445 44555544
No 354
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=56.77 E-value=48 Score=27.32 Aligned_cols=64 Identities=6% Similarity=0.095 Sum_probs=35.4
Q ss_pred CCCeEEEeccH---------HHHHHHHhC-CCccCCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEe
Q 028826 50 EGANLLIGTPG---------RLYDIMERM-DVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (203)
Q Consensus 50 ~~~~ilV~Tp~---------~l~~~~~~~-~~~~l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~S 114 (203)
..||+.+-.|+ .+.++.... .....+.-+++||||||.|-... ...+-..++.-|.+..+++.|
T Consensus 70 ~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~a-aNaLLK~LEEPp~~~~fiL~t 143 (328)
T PRK05707 70 SHPDNFVLEPEEADKTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNA-ANALLKSLEEPSGDTVLLLIS 143 (328)
T ss_pred CCCCEEEEeccCCCCCCCHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHH-HHHHHHHHhCCCCCeEEEEEE
Confidence 35788887774 233333321 11224578899999999996543 333333445444444444443
No 355
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=56.64 E-value=41 Score=25.83 Aligned_cols=117 Identities=17% Similarity=0.171 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEEEcchhHh
Q 028826 9 RELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRL 88 (203)
Q Consensus 9 reLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lViDEad~l 88 (203)
.++|..+...+++....- +.-...+.||.+ |.-+++.+.....++.+++.++-+||--
T Consensus 5 ~~~a~~i~~~i~~~i~~~-~~~~l~lsGGst-------------------p~~~y~~L~~~~~i~w~~v~~f~~DEr~-- 62 (219)
T cd01400 5 EALADRIAEALAAAIAKR-GRFSLALSGGST-------------------PKPLYELLAAAPALDWSKVHVFLGDERC-- 62 (219)
T ss_pred HHHHHHHHHHHHHHHHhc-CeEEEEECCCcc-------------------HHHHHHHhccccCCCCceEEEEEeeccc--
Confidence 345555555555543322 333445555543 4444444443114788999999999943
Q ss_pred hh----hchHHHHH-HHHHhCCCC-CcEEEEeeecCh--hHH---HHHHhc---CCCCeEEEeccCccccccc
Q 028826 89 LD----MGFQKQIS-YIISRLPKL-RRTGLFSATQTE--AVE---ELSKAG---LRNPVRIEVRAESKSHHAS 147 (203)
Q Consensus 89 ~~----~~~~~~~~-~il~~~~~~-~q~i~~SAT~~~--~v~---~~~~~~---l~~~~~i~~~~~~~~~~~~ 147 (203)
+. ..+...++ .++..++.. .++..+....++ ... +.+... ......+..+.+.++|-++
T Consensus 63 Vp~~~~~Sn~~~~~~~ll~~~~~~~~~v~~~~~~~~~~~~a~~y~~~i~~~~~~~~~~Dl~lLGmG~DGH~AS 135 (219)
T cd01400 63 VPPDDPDSNYRLAREALLSHVAIPAANIHPIPTELGPEDAAAAYEKELRALFGGVPPFDLVLLGMGPDGHTAS 135 (219)
T ss_pred cCCCCcccHHHHHHHHhhccCCCCHhhEEeCCCCCCHHHHHHHHHHHHHHHhcCCCCCCEEEECCcCCCceee
Confidence 32 12334444 455665432 244444332221 122 223232 2344566666666666555
No 356
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=56.08 E-value=17 Score=33.24 Aligned_cols=40 Identities=13% Similarity=0.121 Sum_probs=25.8
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEe
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~S 114 (203)
..+-+++||||+|.|-... ...+...+...+....+|+.+
T Consensus 117 ~gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 3567899999999874433 334555555555666666554
No 357
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=56.04 E-value=16 Score=33.19 Aligned_cols=38 Identities=16% Similarity=0.214 Sum_probs=23.5
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEE
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLF 113 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~ 113 (203)
..-+++||||+|.|-...+.. +...++.-|....+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~a~NA-LLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSFNA-LLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHHHHH-HHHHHHcCCCCeEEEEe
Confidence 467899999999886554433 33345544444444444
No 358
>PRK12377 putative replication protein; Provisional
Probab=55.87 E-value=1e+02 Score=24.36 Aligned_cols=86 Identities=17% Similarity=0.279 Sum_probs=45.5
Q ss_pred eEEEEEcC--cchHHHHH----HHHhCCCeEEEeccHHHHHHHHhC---C-----Cc-cCCCccEEEEcchhHhhhhc-h
Q 028826 30 KSMLLVGG--VEVKADVK----KIEEEGANLLIGTPGRLYDIMERM---D-----VL-DFRNLVILVLDEADRLLDMG-F 93 (203)
Q Consensus 30 ~~~~~~~g--~~~~~~~~----~l~~~~~~ilV~Tp~~l~~~~~~~---~-----~~-~l~~v~~lViDEad~l~~~~-~ 93 (203)
....++|. ....+-.. .+...+..+++.|-..+...++.. + .+ .+.++++||+||+...-... -
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~~~s~~~ 181 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQRETKNE 181 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCCCHHH
Confidence 45666663 33333333 233455667766666666555420 1 01 26789999999996543222 3
Q ss_pred HHHHHHHHHhCC-CCCcEEEEee
Q 028826 94 QKQISYIISRLP-KLRRTGLFSA 115 (203)
Q Consensus 94 ~~~~~~il~~~~-~~~q~i~~SA 115 (203)
.+.+..++..-- +...+++.|-
T Consensus 182 ~~~l~~ii~~R~~~~~ptiitSN 204 (248)
T PRK12377 182 QVVLNQIIDRRTASMRSVGMLTN 204 (248)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcC
Confidence 344455554433 3455655543
No 359
>PRK09087 hypothetical protein; Validated
Probab=55.82 E-value=94 Score=24.01 Aligned_cols=103 Identities=8% Similarity=0.024 Sum_probs=50.3
Q ss_pred EEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcC--cchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 4 IISPTRELSAQIYHVAQPFISTLPDVKSMLLVGG--VEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 4 il~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g--~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
|+.|....|.. .++++... .-+...++|. ..+.+-...+. ......+-+++.+...+-. . +.+ ..++
T Consensus 24 i~~~~N~~a~~---~l~~~~~~--~~~~l~l~G~~GsGKThLl~~~~-~~~~~~~i~~~~~~~~~~~-~---~~~-~~l~ 92 (226)
T PRK09087 24 LVTESNRAAVS---LVDHWPNW--PSPVVVLAGPVGSGKTHLASIWR-EKSDALLIHPNEIGSDAAN-A---AAE-GPVL 92 (226)
T ss_pred eecCchHHHHH---HHHhcccC--CCCeEEEECCCCCCHHHHHHHHH-HhcCCEEecHHHcchHHHH-h---hhc-CeEE
Confidence 34454444444 34443321 2344677764 33444444432 3344555555433321111 1 111 5899
Q ss_pred EcchhHhhhhchHHHHHHHHHhCCC-CCcEEEEeeecCh
Q 028826 82 LDEADRLLDMGFQKQISYIISRLPK-LRRTGLFSATQTE 119 (203)
Q Consensus 82 iDEad~l~~~~~~~~~~~il~~~~~-~~q~i~~SAT~~~ 119 (203)
+|++|.+ . .-.+.+.+++..+.. ..++++.|.+-|+
T Consensus 93 iDDi~~~-~-~~~~~lf~l~n~~~~~g~~ilits~~~p~ 129 (226)
T PRK09087 93 IEDIDAG-G-FDETGLFHLINSVRQAGTSLLMTSRLWPS 129 (226)
T ss_pred EECCCCC-C-CCHHHHHHHHHHHHhCCCeEEEECCCChH
Confidence 9999976 2 224556677766654 4555555544443
No 360
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=55.79 E-value=1.6e+02 Score=26.55 Aligned_cols=121 Identities=21% Similarity=0.317 Sum_probs=0.0
Q ss_pred HHHHHhhhcCCCceEEEEEc----Ccc-hHHHHHHHHhCCCeEEEeccHHHHHHH-----------------HhCCCccC
Q 028826 17 HVAQPFISTLPDVKSMLLVG----GVE-VKADVKKIEEEGANLLIGTPGRLYDIM-----------------ERMDVLDF 74 (203)
Q Consensus 17 ~~~~~l~~~~~~i~~~~~~~----g~~-~~~~~~~l~~~~~~ilV~Tp~~l~~~~-----------------~~~~~~~l 74 (203)
+++++|+-. .++-..++| |.. ..++.-.+.+.+.-=||--|+.|..++ ++ ..-.-
T Consensus 246 ~vie~lGi~--HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r-~~g~~ 322 (744)
T KOG0741|consen 246 EVIEQLGIK--HVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQR-RLGAN 322 (744)
T ss_pred HHHHHcCcc--ceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHH-hhCcc
Q ss_pred CCccEEEEcchhHhhh--------hc-hHHHHHHHHHhCC-----CCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccC
Q 028826 75 RNLVILVLDEADRLLD--------MG-FQKQISYIISRLP-----KLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAE 140 (203)
Q Consensus 75 ~~v~~lViDEad~l~~--------~~-~~~~~~~il~~~~-----~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~ 140 (203)
+.+..+|+||.|.++. .| .-..+..++.++- ++.-+|..+.- .++++.-+-.|-.+++..+
T Consensus 323 SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR-----~DlIDEALLRPGRlEVqmE 397 (744)
T KOG0741|consen 323 SGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNR-----KDLIDEALLRPGRLEVQME 397 (744)
T ss_pred CCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCc-----hhhHHHHhcCCCceEEEEE
Q ss_pred cccccccchhhhhccCCCCC
Q 028826 141 SKSHHASASSQQLASSKTPL 160 (203)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~ 160 (203)
-+.|+
T Consensus 398 ---------------IsLPD 402 (744)
T KOG0741|consen 398 ---------------ISLPD 402 (744)
T ss_pred ---------------EeCCC
No 361
>PF12846 AAA_10: AAA-like domain
Probab=55.75 E-value=19 Score=28.36 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=25.4
Q ss_pred CCccEEEEcchhHhhhh-chHHHHHHHHHhCCCCCcEEEE
Q 028826 75 RNLVILVLDEADRLLDM-GFQKQISYIISRLPKLRRTGLF 113 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~-~~~~~~~~il~~~~~~~q~i~~ 113 (203)
..-.++++||||.++.. .....+..+++...+..-.+++
T Consensus 219 ~~~~~i~iDEa~~~~~~~~~~~~~~~~~~~~Rk~g~~~~l 258 (304)
T PF12846_consen 219 GRPKIIVIDEAHNFLSNPSGAEFLDELLREGRKYGVGLIL 258 (304)
T ss_pred CceEEEEeCCccccccccchhhhhhHHHHHHHhcCCEEEE
Confidence 45678899999999876 3455556666666443333444
No 362
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=55.68 E-value=21 Score=31.98 Aligned_cols=43 Identities=19% Similarity=0.198 Sum_probs=26.9
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecC
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~ 118 (203)
..+-+++||||+|.|-... ...+...++..|...-+|+.+ |-+
T Consensus 116 ~~~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~t-te~ 158 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFAT-TEP 158 (584)
T ss_pred cCCceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEe-CCh
Confidence 4678899999999885543 334445555555555555544 433
No 363
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=55.64 E-value=20 Score=30.02 Aligned_cols=42 Identities=14% Similarity=0.121 Sum_probs=26.6
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeee
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 116 (203)
-+.-+++||||+|.|-.. ....+...++.-+..+.++++|..
T Consensus 139 ~~~~kVviIDead~m~~~-aanaLLK~LEepp~~~~~IL~t~~ 180 (365)
T PRK07471 139 EGGWRVVIVDTADEMNAN-AANALLKVLEEPPARSLFLLVSHA 180 (365)
T ss_pred cCCCEEEEEechHhcCHH-HHHHHHHHHhcCCCCeEEEEEECC
Confidence 356789999999988433 344455556655555555655443
No 364
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=55.25 E-value=15 Score=35.37 Aligned_cols=42 Identities=17% Similarity=0.119 Sum_probs=35.8
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeee
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 116 (203)
....++++||.|.-+|......+..++..+....|+|++|--
T Consensus 1095 ~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~ 1136 (1164)
T TIGR02169 1095 KPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLR 1136 (1164)
T ss_pred CCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECc
Confidence 567899999999999988888888888888778898887665
No 365
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=55.01 E-value=56 Score=30.72 Aligned_cols=73 Identities=19% Similarity=0.345 Sum_probs=44.2
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCc--chHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccC--CCc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGV--EVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDF--RNL 77 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~--~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l--~~v 77 (203)
+||+.|+.+...+++..+....... ++.+ +..|. +..+-.+...+++..|++|| +.++ .++|+ ..+
T Consensus 677 ~LVlftS~~~l~~v~~~L~~~~~~~-~~~~--l~q~~~~~r~~ll~~F~~~~~~iLlgt-~sf~------EGVD~~g~~l 746 (850)
T TIGR01407 677 ILVLFTSYEMLHMVYDMLNELPEFE-GYEV--LAQGINGSRAKIKKRFNNGEKAILLGT-SSFW------EGVDFPGNGL 746 (850)
T ss_pred EEEEeCCHHHHHHHHHHHhhhcccc-CceE--EecCCCccHHHHHHHHHhCCCeEEEEc-ceee------cccccCCCce
Confidence 7899999999999999887643222 3443 23332 33333344334567799998 3333 24444 456
Q ss_pred cEEEEcc
Q 028826 78 VILVLDE 84 (203)
Q Consensus 78 ~~lViDE 84 (203)
..+||+-
T Consensus 747 ~~viI~~ 753 (850)
T TIGR01407 747 VCLVIPR 753 (850)
T ss_pred EEEEEeC
Confidence 6777743
No 366
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=54.77 E-value=19 Score=32.30 Aligned_cols=38 Identities=26% Similarity=0.391 Sum_probs=29.0
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeee
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 116 (203)
..++++|||||-.+ +. +.+..+++.++...++|+++=.
T Consensus 258 l~~dvlIiDEaSMv-d~---~l~~~ll~al~~~~rlIlvGD~ 295 (586)
T TIGR01447 258 LPLDVLVVDEASMV-DL---PLMAKLLKALPPNTKLILLGDK 295 (586)
T ss_pred CcccEEEEcccccC-CH---HHHHHHHHhcCCCCEEEEECCh
Confidence 35789999999644 43 3677788888888888887654
No 367
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=54.50 E-value=17 Score=30.28 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=24.5
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEe
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~S 114 (203)
..+-+++|+||+|.|-...+. .+...+...|....+++.+
T Consensus 117 ~~~~kviIIDEa~~l~~~a~n-aLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 117 KSRFKVYLIDEVHMLSRHSFN-ALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred cCCceEEEEEChhhcCHHHHH-HHHHHHhcCCCCeEEEEEc
Confidence 346789999999998544332 3344445445555555554
No 368
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=54.50 E-value=19 Score=33.26 Aligned_cols=45 Identities=20% Similarity=0.277 Sum_probs=28.3
Q ss_pred ccEEEEcchhHhhhhch----HHHHHHHHHhCCCCCcEEEEeeecChhH
Q 028826 77 LVILVLDEADRLLDMGF----QKQISYIISRLPKLRRTGLFSATQTEAV 121 (203)
Q Consensus 77 v~~lViDEad~l~~~~~----~~~~~~il~~~~~~~q~i~~SAT~~~~v 121 (203)
-.+++|||+|.++..|. ..++.+++..+-...++.+.+||-+++.
T Consensus 279 ~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~ 327 (758)
T PRK11034 279 NSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF 327 (758)
T ss_pred CCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHH
Confidence 35999999999975431 3445555554434556666667766553
No 369
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=54.39 E-value=20 Score=31.78 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=26.8
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEe
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~S 114 (203)
..+-+++||||+|.|-... ...+...++..|....+|+.+
T Consensus 117 ~g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 4567899999999985543 445556666666566666554
No 370
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=54.36 E-value=22 Score=26.82 Aligned_cols=40 Identities=23% Similarity=0.256 Sum_probs=30.4
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEe
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~S 114 (203)
+.-+++++||...-++......+..++..+....++++.|
T Consensus 134 ~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiit 173 (197)
T cd03278 134 RPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVIT 173 (197)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEE
Confidence 4568999999988888877888888888876555555543
No 371
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=54.29 E-value=20 Score=31.21 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=14.3
Q ss_pred CCccEEEEcchhHhhhhch
Q 028826 75 RNLVILVLDEADRLLDMGF 93 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~ 93 (203)
..-+++||||||.|-...+
T Consensus 120 g~~KV~IIDEah~Ls~~A~ 138 (484)
T PRK14956 120 GKYKVYIIDEVHMLTDQSF 138 (484)
T ss_pred CCCEEEEEechhhcCHHHH
Confidence 3567999999998854433
No 372
>KOG4284 consensus DEAD box protein [Transcription]
Probab=54.25 E-value=20 Score=32.59 Aligned_cols=47 Identities=15% Similarity=0.296 Sum_probs=35.6
Q ss_pred CceEEEEEcCcchHHHHH---HHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 28 DVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 28 ~i~~~~~~~g~~~~~~~~---~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
|+.+.++.|.++..+... .+....+.|||+|- +.. +++|..++.++|
T Consensus 296 G~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTD-----Lta--RGIDa~~vNLVV 345 (980)
T KOG4284|consen 296 GLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTD-----LTA--RGIDADNVNLVV 345 (980)
T ss_pred CCCeEEeccccchhHHHHHHHHhhhceEEEEEecc-----hhh--ccCCccccceEE
Confidence 788999998887766554 44456799999986 333 578888888887
No 373
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=53.80 E-value=15 Score=34.77 Aligned_cols=39 Identities=23% Similarity=0.162 Sum_probs=29.6
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEee
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SA 115 (203)
+.--++|+||+|.-+|..-...+...++ +.+.|+|+.|=
T Consensus 1072 ~PaPFfvlDEiDAALDntNi~kvasyIr--~~~~Q~IvISL 1110 (1141)
T KOG0018|consen 1072 KPAPFFVLDEIDAALDNTNIGKVASYIR--SSNFQFIVISL 1110 (1141)
T ss_pred CCCCceehhhHHHHhhhccHHHHHHHHh--cCCceEEEEec
Confidence 3445899999999998876666655555 56789999874
No 374
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=53.78 E-value=31 Score=30.22 Aligned_cols=63 Identities=11% Similarity=0.098 Sum_probs=34.4
Q ss_pred CCeEEEeccH------HHHHHHHhC-CCccCCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEe
Q 028826 51 GANLLIGTPG------RLYDIMERM-DVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (203)
Q Consensus 51 ~~~ilV~Tp~------~l~~~~~~~-~~~~l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~S 114 (203)
.+|++-..+. .+.+++... ......+-+++||||+|.|-...+ ..+...++.-|....+|+.+
T Consensus 84 ~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~-NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 84 HPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAF-NALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred CCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHH-HHHHHHHhCCCCCeEEEEEe
Confidence 4677776553 233333321 112246789999999998854433 33444455545444555443
No 375
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=53.60 E-value=13 Score=35.57 Aligned_cols=79 Identities=18% Similarity=0.228 Sum_probs=54.9
Q ss_pred CCCeEEEeccHHHHHHHHhCCC--------------ccCCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEee
Q 028826 50 EGANLLIGTPGRLYDIMERMDV--------------LDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (203)
Q Consensus 50 ~~~~ilV~Tp~~l~~~~~~~~~--------------~~l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SA 115 (203)
.|.-+-|.-|.+=|..+.+..+ .....--+.|+||+|.-+|..-..-+.+.+..-.+++|+|+.|=
T Consensus 1177 eGV~FSVrPpKKSWK~I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIVanYIkErTkNAQFIIISL 1256 (1293)
T KOG0996|consen 1177 EGVMFSVRPPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIIISL 1256 (1293)
T ss_pred cCceEEeeCchhhhhhcccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhHHHHHHHhccCCeEEEEEe
Confidence 4566777777776655543100 01234458999999999998888888888888889999999974
Q ss_pred ecChhHHHHHHhcCC
Q 028826 116 TQTEAVEELSKAGLR 130 (203)
Q Consensus 116 T~~~~v~~~~~~~l~ 130 (203)
-+++-++++..+.
T Consensus 1257 --RnnMFELa~rLvG 1269 (1293)
T KOG0996|consen 1257 --RNNMFELANRLVG 1269 (1293)
T ss_pred --hhhHHHHHhhhee
Confidence 4556666665544
No 376
>PRK13342 recombination factor protein RarA; Reviewed
Probab=53.55 E-value=34 Score=29.05 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=23.0
Q ss_pred CccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecC
Q 028826 76 NLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (203)
Q Consensus 76 ~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~ 118 (203)
.-.++++||+|.+.... ...++..+. ..+++++++|-.
T Consensus 92 ~~~vL~IDEi~~l~~~~----q~~LL~~le-~~~iilI~att~ 129 (413)
T PRK13342 92 RRTILFIDEIHRFNKAQ----QDALLPHVE-DGTITLIGATTE 129 (413)
T ss_pred CceEEEEechhhhCHHH----HHHHHHHhh-cCcEEEEEeCCC
Confidence 56799999999985332 223334442 355666666644
No 377
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=53.52 E-value=24 Score=27.00 Aligned_cols=35 Identities=17% Similarity=0.355 Sum_probs=24.5
Q ss_pred cEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeee
Q 028826 78 VILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (203)
Q Consensus 78 ~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 116 (203)
.++|+|||-.+ -.+.++.++.++..+..+++++-.
T Consensus 121 ~~iIvDEaQN~----t~~~~k~ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 121 AFIIVDEAQNL----TPEELKMILTRIGEGSKIIITGDP 155 (205)
T ss_dssp EEEEE-SGGG------HHHHHHHHTTB-TT-EEEEEE--
T ss_pred eEEEEecccCC----CHHHHHHHHcccCCCcEEEEecCc
Confidence 79999999654 467889999999999998888765
No 378
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=53.40 E-value=51 Score=29.22 Aligned_cols=99 Identities=13% Similarity=0.128 Sum_probs=54.9
Q ss_pred EEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHh-CCCccCCCccEEE
Q 028826 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER-MDVLDFRNLVILV 81 (203)
Q Consensus 3 lil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~-~~~~~l~~v~~lV 81 (203)
.|++|+.+-+.+.+..++......++++... ........|...--......+.. .+..+=.+-.+.|
T Consensus 122 ~i~A~s~~qa~~~F~~ar~mv~~~~~l~~~~------------~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I 189 (546)
T COG4626 122 YILAPSVEQAANSFNPARDMVKRDDDLRDLC------------NVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAI 189 (546)
T ss_pred EEEeccHHHHHHhhHHHHHHHHhCcchhhhh------------ccccceeEEEecccceeeeeeccCCCcccCCCcceEE
Confidence 6889999988888888888766543222111 00011112222222222333322 1445566788999
Q ss_pred EcchhHhhhhchHHHHHHHHHhCC--CCCcEEEEee
Q 028826 82 LDEADRLLDMGFQKQISYIISRLP--KLRRTGLFSA 115 (203)
Q Consensus 82 iDEad~l~~~~~~~~~~~il~~~~--~~~q~i~~SA 115 (203)
+||.|.....+ +.+..+..-+. ++.+++..|.
T Consensus 190 ~DEih~f~~~~--~~~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 190 IDELHLFGKQE--DMYSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred EehhhhhcCHH--HHHHHHHhhhccCcCceEEEEec
Confidence 99999875542 45555555553 4556665554
No 379
>PRK04296 thymidine kinase; Provisional
Probab=53.31 E-value=16 Score=27.41 Aligned_cols=52 Identities=17% Similarity=0.332 Sum_probs=28.3
Q ss_pred EeccHHHHHHHHhCCCccCCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEee
Q 028826 56 IGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (203)
Q Consensus 56 V~Tp~~l~~~~~~~~~~~l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SA 115 (203)
+..+..+.+.+.. .-.+.+++|+||++.+ + .+.+..+++.+.+.-..+++++
T Consensus 62 ~~~~~~~~~~~~~----~~~~~dvviIDEaq~l-~---~~~v~~l~~~l~~~g~~vi~tg 113 (190)
T PRK04296 62 VSSDTDIFELIEE----EGEKIDCVLIDEAQFL-D---KEQVVQLAEVLDDLGIPVICYG 113 (190)
T ss_pred eCChHHHHHHHHh----hCCCCCEEEEEccccC-C---HHHHHHHHHHHHHcCCeEEEEe
Confidence 4455555555532 2346789999999653 2 2335555555433334444443
No 380
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=53.21 E-value=31 Score=27.14 Aligned_cols=28 Identities=29% Similarity=0.470 Sum_probs=18.2
Q ss_pred cEEEEcchhHhhhhc---h-HHHHHHHHHhCC
Q 028826 78 VILVLDEADRLLDMG---F-QKQISYIISRLP 105 (203)
Q Consensus 78 ~~lViDEad~l~~~~---~-~~~~~~il~~~~ 105 (203)
..+++||+|.|...+ + .+.+..++..+.
T Consensus 107 ~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e 138 (261)
T TIGR02881 107 GVLFIDEAYSLARGGEKDFGKEAIDTLVKGME 138 (261)
T ss_pred CEEEEechhhhccCCccchHHHHHHHHHHHHh
Confidence 599999999986422 2 334555666553
No 381
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=53.14 E-value=18 Score=32.98 Aligned_cols=40 Identities=28% Similarity=0.301 Sum_probs=23.8
Q ss_pred CCCeEEEeccHHHHHHHHhCCCccCC-CccEEEEcchhHhhh
Q 028826 50 EGANLLIGTPGRLYDIMERMDVLDFR-NLVILVLDEADRLLD 90 (203)
Q Consensus 50 ~~~~ilV~Tp~~l~~~~~~~~~~~l~-~v~~lViDEad~l~~ 90 (203)
..+++++---..|++--.+ +.+.++ .=..+||||||.+++
T Consensus 322 p~aqlV~LPYQ~LL~~stR-~slgI~LkdsIvIiDEAHNlid 362 (821)
T KOG1133|consen 322 PQAQLVTLPYQLLLHESTR-KSLGISLKDSIVIIDEAHNLID 362 (821)
T ss_pred ccccEEeccHHHHHhHHHH-HhcCccccccEEEEechhHHHH
Confidence 3467766644444433333 333322 236899999999986
No 382
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=53.02 E-value=17 Score=32.05 Aligned_cols=40 Identities=15% Similarity=0.206 Sum_probs=25.6
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEe
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~S 114 (203)
..+-+++||||+|.|-...+ ..+...++..|....+|+.+
T Consensus 117 ~~~~kVvIIDEad~ls~~a~-naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHHH-HHHHHHHhCCCCCEEEEEEe
Confidence 35678999999998855433 33444455555566666654
No 383
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=52.99 E-value=62 Score=26.66 Aligned_cols=40 Identities=13% Similarity=0.148 Sum_probs=26.7
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEe
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~S 114 (203)
...-+++++|++|.|- ......+...++..+....+++.|
T Consensus 111 ~~~~kV~iiEp~~~Ld-~~a~naLLk~LEep~~~~~~Ilvt 150 (325)
T PRK08699 111 RGGLRVILIHPAESMN-LQAANSLLKVLEEPPPQVVFLLVS 150 (325)
T ss_pred cCCceEEEEechhhCC-HHHHHHHHHHHHhCcCCCEEEEEe
Confidence 3678899999999884 344556666777766555455543
No 384
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=52.96 E-value=57 Score=26.69 Aligned_cols=40 Identities=8% Similarity=0.075 Sum_probs=25.7
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEee
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SA 115 (203)
...-+++|||+||.|-... ...+..+++.-| +..+++.+.
T Consensus 122 ~~~~kVvII~~ae~m~~~a-aNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 122 EAPRKVVVIEDAETMNEAA-ANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred cCCceEEEEEchhhcCHHH-HHHHHHHHhCCC-CCeEEEEEC
Confidence 3678999999999985443 344455555555 565555443
No 385
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=52.84 E-value=19 Score=33.04 Aligned_cols=38 Identities=24% Similarity=0.302 Sum_probs=28.8
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeee
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 116 (203)
...+++|+|||..+ + ...+..+++.++...++++++-+
T Consensus 415 ~~~~llIvDEaSMv-d---~~~~~~Ll~~~~~~~rlilvGD~ 452 (720)
T TIGR01448 415 IDCDLLIVDESSMM-D---TWLALSLLAALPDHARLLLVGDT 452 (720)
T ss_pred ccCCEEEEeccccC-C---HHHHHHHHHhCCCCCEEEEECcc
Confidence 45789999999866 3 23557778888888888887655
No 386
>TIGR00069 hisD histidinol dehydrogenase. This model describes a polypeptide sequence catalyzing the final step in histidine biosynthesis, found sometimes as an independent protein and sometimes as a part of a multifunctional protein.
Probab=52.83 E-value=38 Score=28.67 Aligned_cols=67 Identities=18% Similarity=0.313 Sum_probs=39.7
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
+++.++++.+|+.++..++.+....++. .+--.+.+.+.+.=|++.+-+.-.++.+. +-..++.+.
T Consensus 233 ~~iLvT~s~~la~~V~~~v~~ql~~l~r-----------~~i~~~al~~~g~ii~v~~l~ea~~~~N~---~APEHLel~ 298 (393)
T TIGR00069 233 QAILVTTSEELAEAVQEEIERQLATLPR-----------REIARKSLEDNGAIILVDDLEEAIEISND---YAPEHLELQ 298 (393)
T ss_pred cEEEEECCHHHHHHHHHHHHHHHHhCCh-----------HHHHHHHHHhCCEEEEECCHHHHHHHHHh---hChHhheeh
Confidence 4788999999999999999888776531 11122223233444555555555555532 444555544
Q ss_pred E
Q 028826 81 V 81 (203)
Q Consensus 81 V 81 (203)
+
T Consensus 299 ~ 299 (393)
T TIGR00069 299 T 299 (393)
T ss_pred h
Confidence 3
No 387
>PRK13770 histidinol dehydrogenase; Provisional
Probab=52.45 E-value=34 Score=29.18 Aligned_cols=27 Identities=7% Similarity=0.075 Sum_probs=23.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCC
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLP 27 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~ 27 (203)
+++.++++++|+.++..++.+....+|
T Consensus 254 ~~iLvT~s~~la~~V~~ev~~ql~~lp 280 (416)
T PRK13770 254 RTYVISEDAQVLKDLESRIAKALPNVD 280 (416)
T ss_pred cEEEEeCCHHHHHHHHHHHHHHHHhCC
Confidence 478899999999999999988876664
No 388
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=52.14 E-value=15 Score=32.62 Aligned_cols=79 Identities=22% Similarity=0.238 Sum_probs=42.0
Q ss_pred EEEEcCcHHHHHHHH-HHHHHhhhcCCCceEEEEE---cCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCc
Q 028826 2 GMIISPTRELSAQIY-HVAQPFISTLPDVKSMLLV---GGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (203)
Q Consensus 2 alil~PtreLa~Qi~-~~~~~l~~~~~~i~~~~~~---~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v 77 (203)
.|++.||.++|.... ..+..+....|.++-..-- .+.......+.. . +..+.++..+.- ..+.-..+
T Consensus 65 ~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~l~~~~~~~~~~~~~~t~~~k~f-~-gg~l~~~ga~S~-------~~l~s~~~ 135 (557)
T PF05876_consen 65 MLYVQPTDDAAKDFSKERLDPMIRASPVLRRKLSPSKSRDSGNTILYKRF-P-GGFLYLVGANSP-------SNLRSRPA 135 (557)
T ss_pred EEEEEEcHHHHHHHHHHHHHHHHHhCHHHHHHhCchhhcccCCchhheec-C-CCEEEEEeCCCC-------cccccCCc
Confidence 589999999997765 5566665555444421111 011111111111 1 333444332221 33444678
Q ss_pred cEEEEcchhHhh
Q 028826 78 VILVLDEADRLL 89 (203)
Q Consensus 78 ~~lViDEad~l~ 89 (203)
+++++||+|.+-
T Consensus 136 r~~~~DEvD~~p 147 (557)
T PF05876_consen 136 RYLLLDEVDRYP 147 (557)
T ss_pred CEEEEechhhcc
Confidence 999999999985
No 389
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=51.94 E-value=23 Score=24.21 Aligned_cols=40 Identities=18% Similarity=0.265 Sum_probs=23.2
Q ss_pred CCceeEEEEEcCCC----CcHHHHHHHHhcCCCCeEEEEeccCCc
Q 028826 159 PLGLHLEYLECESD----KKPSQLVDLLIKNKSKKIIMYVQHGNF 199 (203)
Q Consensus 159 ~~~i~~~~~~~~~~----~k~~~l~~ll~~~~~~~~lIF~ns~~~ 199 (203)
.-++...++.+... +.+..+.++++..+ +|+++||.|-.+
T Consensus 55 ~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~~~-~Pvl~hC~sG~R 98 (110)
T PF04273_consen 55 ALGLQYVHIPVDGGAITEEDVEAFADALESLP-KPVLAHCRSGTR 98 (110)
T ss_dssp HCT-EEEE----TTT--HHHHHHHHHHHHTTT-TSEEEE-SCSHH
T ss_pred HcCCeEEEeecCCCCCCHHHHHHHHHHHHhCC-CCEEEECCCChh
Confidence 35677777777654 35566677777654 699999988654
No 390
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=51.58 E-value=55 Score=28.81 Aligned_cols=73 Identities=15% Similarity=0.176 Sum_probs=54.2
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHH---hCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIE---EEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~---~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
.|+.+.+.+-+......++-+.... +.++..+.|+.+.+...+.+. .++.+++|+|- .+. +++|+.++.
T Consensus 432 ~lcf~~S~~sa~Rl~~~L~v~~~~~-~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD-----~la--RGiDv~~v~ 503 (620)
T KOG0350|consen 432 TLCFVNSVSSANRLAHVLKVEFCSD-NFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSD-----ALA--RGIDVNDVD 503 (620)
T ss_pred EEEEecchHHHHHHHHHHHHHhccc-cchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehh-----hhh--cCCcccccc
Confidence 5788888888888888888333333 788888888888777666653 36789999964 343 578888888
Q ss_pred EEEE
Q 028826 79 ILVL 82 (203)
Q Consensus 79 ~lVi 82 (203)
.+|=
T Consensus 504 ~VIN 507 (620)
T KOG0350|consen 504 NVIN 507 (620)
T ss_pred eEee
Confidence 7763
No 391
>PRK04841 transcriptional regulator MalT; Provisional
Probab=51.58 E-value=19 Score=33.66 Aligned_cols=44 Identities=11% Similarity=0.225 Sum_probs=35.2
Q ss_pred CccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecCh
Q 028826 76 NLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (203)
Q Consensus 76 ~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~ 119 (203)
.--++|+|++|.+-+....+.+..++...|.+..+++.|-+.|+
T Consensus 121 ~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 121 QPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred CCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 34589999999885555677889999999988999888877544
No 392
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.43 E-value=23 Score=31.66 Aligned_cols=40 Identities=13% Similarity=0.100 Sum_probs=25.4
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEe
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~S 114 (203)
..+-+++||||+|.|-... ...+...++..|...-+|+.+
T Consensus 117 ~~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred cCCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEEEEe
Confidence 4677899999999875433 344555555555555555443
No 393
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=51.37 E-value=21 Score=33.22 Aligned_cols=44 Identities=16% Similarity=0.299 Sum_probs=38.5
Q ss_pred CccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecCh
Q 028826 76 NLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (203)
Q Consensus 76 ~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~ 119 (203)
+-=++|+|+-|.+-+....+.+++++++.|.+.+.++.|=+-|+
T Consensus 129 ~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 129 GPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred CceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 34599999999998888899999999999999999998877664
No 394
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.13 E-value=20 Score=32.30 Aligned_cols=42 Identities=17% Similarity=0.293 Sum_probs=24.8
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecC
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~ 118 (203)
.+.+++||||+|.|....+.. +...++..|....+|+. +|-+
T Consensus 123 g~~KV~IIDEvh~Ls~~a~Na-LLKtLEEPP~~~~fIL~-Ttd~ 164 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNA-MLKTLEEPPEYLKFVLA-TTDP 164 (618)
T ss_pred CCceEEEEEChhhCCHHHHHH-HHHhcccCCCCeEEEEE-ECCc
Confidence 467899999999986554333 33344444444455544 3443
No 395
>CHL00181 cbbX CbbX; Provisional
Probab=50.33 E-value=40 Score=27.14 Aligned_cols=48 Identities=15% Similarity=0.222 Sum_probs=27.2
Q ss_pred cEEEEcchhHhhhh----ch-HHHHHHHHHhCCC-CCcEEEEeeecChhHHHHH
Q 028826 78 VILVLDEADRLLDM----GF-QKQISYIISRLPK-LRRTGLFSATQTEAVEELS 125 (203)
Q Consensus 78 ~~lViDEad~l~~~----~~-~~~~~~il~~~~~-~~q~i~~SAT~~~~v~~~~ 125 (203)
.++++||+|.+... .+ .+.+..++..+.. ...+++.-|+.++.+..+.
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~ 177 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFY 177 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHH
Confidence 69999999998532 12 2333444444422 2234555567776665444
No 396
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=50.15 E-value=33 Score=31.65 Aligned_cols=43 Identities=21% Similarity=0.224 Sum_probs=26.1
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHH
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE 122 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~ 122 (203)
.+-.++++||+|.+.... .. .++..+ ...++++.++|-++...
T Consensus 108 ~~~~IL~IDEIh~Ln~~q-Qd---aLL~~l-E~g~IiLI~aTTenp~~ 150 (725)
T PRK13341 108 GKRTILFIDEVHRFNKAQ-QD---ALLPWV-ENGTITLIGATTENPYF 150 (725)
T ss_pred CCceEEEEeChhhCCHHH-HH---HHHHHh-cCceEEEEEecCCChHh
Confidence 345689999999875332 22 223333 34677888887655433
No 397
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=50.04 E-value=22 Score=25.99 Aligned_cols=77 Identities=10% Similarity=0.224 Sum_probs=46.6
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEecc-HHHHHHHHhCCCccCC--Ccc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTP-GRLYDIMERMDVLDFR--NLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp-~~l~~~~~~~~~~~l~--~v~ 78 (203)
+||+.|+.+....+.+.++...... ++.+..- ++.+..+..+....++..|++|+. +++. ..+|+. .++
T Consensus 12 ~lv~f~Sy~~l~~~~~~~~~~~~~~-~~~v~~q-~~~~~~~~l~~~~~~~~~il~~v~~g~~~------EGiD~~~~~~r 83 (167)
T PF13307_consen 12 VLVFFPSYRRLEKVYERLKERLEEK-GIPVFVQ-GSKSRDELLEEFKRGEGAILLAVAGGSFS------EGIDFPGDLLR 83 (167)
T ss_dssp EEEEESSHHHHHHHHTT-TSS-E-E-TSCEEES-TCCHHHHHHHHHCCSSSEEEEEETTSCCG------SSS--ECESEE
T ss_pred EEEEeCCHHHHHHHHHHHHhhcccc-cceeeec-CcchHHHHHHHHHhccCeEEEEEecccEE------EeecCCCchhh
Confidence 6899999999998888777654322 3433322 445555566666566677888876 2333 355654 588
Q ss_pred EEEEcchh
Q 028826 79 ILVLDEAD 86 (203)
Q Consensus 79 ~lViDEad 86 (203)
.+|++-.=
T Consensus 84 ~vii~glP 91 (167)
T PF13307_consen 84 AVIIVGLP 91 (167)
T ss_dssp EEEEES--
T ss_pred eeeecCCC
Confidence 99988764
No 398
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=49.72 E-value=26 Score=27.33 Aligned_cols=42 Identities=24% Similarity=0.267 Sum_probs=33.3
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeee
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 116 (203)
.+-+++++||...-++......+..++..+....++++.|-.
T Consensus 187 ~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~ 228 (251)
T cd03273 187 KPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLK 228 (251)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 456899999998888877788888888777666777777766
No 399
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=49.63 E-value=56 Score=27.43 Aligned_cols=48 Identities=17% Similarity=0.277 Sum_probs=30.4
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCCC-CcEEEEeeecChhHHH
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKL-RRTGLFSATQTEAVEE 123 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~-~q~i~~SAT~~~~v~~ 123 (203)
...-++|+||+|.|++... +.+..+++..... .++++..-+-..+...
T Consensus 122 ~~~~IvvLDEid~L~~~~~-~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~ 170 (366)
T COG1474 122 GKTVIVILDEVDALVDKDG-EVLYSLLRAPGENKVKVSIIAVSNDDKFLD 170 (366)
T ss_pred CCeEEEEEcchhhhccccc-hHHHHHHhhccccceeEEEEEEeccHHHHH
Confidence 4567899999999987654 6666666655433 4555555544443333
No 400
>PRK00877 hisD bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed
Probab=49.36 E-value=44 Score=28.63 Aligned_cols=26 Identities=15% Similarity=0.344 Sum_probs=22.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcC
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTL 26 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~ 26 (203)
+++.++++++|+.++..++.+....+
T Consensus 264 ~aiLvT~s~~la~~V~~~v~~ql~~l 289 (425)
T PRK00877 264 QSILVTTSEELAEAVAAEVERQLATL 289 (425)
T ss_pred cEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 47899999999999999998877665
No 401
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=48.64 E-value=94 Score=21.91 Aligned_cols=62 Identities=13% Similarity=0.214 Sum_probs=45.8
Q ss_pred EEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHH
Q 028826 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIME 67 (203)
Q Consensus 3 lil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~ 67 (203)
.|+-.|--...|..++++++. . .+++..+..+.+.+.-.++..+-+|..++.+-+.....++
T Consensus 2 ~ILGsTGSIG~qtLdVi~~~~-d--~f~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~ 63 (129)
T PF02670_consen 2 AILGSTGSIGTQTLDVIRKHP-D--KFEVVALSAGSNIEKLAEQAREFKPKYVVIADEEAYEELK 63 (129)
T ss_dssp EEESTTSHHHHHHHHHHHHCT-T--TEEEEEEEESSTHHHHHHHHHHHT-SEEEESSHHHHHHHH
T ss_pred EEEcCCcHHHHHHHHHHHhCC-C--ceEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHH
Confidence 467778888899999999983 2 5899999999998887777766667776666655444443
No 402
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=48.62 E-value=25 Score=26.82 Aligned_cols=39 Identities=23% Similarity=0.192 Sum_probs=33.0
Q ss_pred CccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEe
Q 028826 76 NLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (203)
Q Consensus 76 ~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~S 114 (203)
.-+.+++||...=+|......+..++..+.+..++++.|
T Consensus 149 ~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs 187 (212)
T cd03274 149 PTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVIS 187 (212)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 468999999988888888888888888887777888887
No 403
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=48.32 E-value=67 Score=27.91 Aligned_cols=75 Identities=13% Similarity=0.047 Sum_probs=42.7
Q ss_pred EEcC--cHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 4 IISP--TRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 4 il~P--treLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
+.+| +++.....+..+..+.+.. +.....+..+.+..+..+.+.+.+||++||-. . ....+-...+-+
T Consensus 343 vgt~~~~~~~~~~d~~~l~~~~~~~-~~~~~vive~~D~~el~~~i~~~~pDLlIgG~--------~-~~~Pl~~~G~p~ 412 (457)
T CHL00073 343 IGIPYMDKRYQAAELALLEDTCRKM-NVPMPRIVEKPDNYNQIQRIRELQPDLAITGM--------A-HANPLEARGINT 412 (457)
T ss_pred EEeCCCChhhhHHHHHHHHHHhhhc-CCCCcEEEeCCCHHHHHHHHhhCCCCEEEccc--------c-ccCchhhcCCcc
Confidence 4555 5665555555565555443 33333445566677777777677899999873 1 233444555555
Q ss_pred EcchhHh
Q 028826 82 LDEADRL 88 (203)
Q Consensus 82 iDEad~l 88 (203)
.|-+-..
T Consensus 413 ~d~~~~~ 419 (457)
T CHL00073 413 KWSVEFT 419 (457)
T ss_pred eEecceE
Confidence 5554443
No 404
>PF14792 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1RZT_A 3PML_A 2PFN_A 3HX0_K 3HWT_A 2GWS_E 2BCQ_A 3UPQ_A 2BCS_A 3UQ2_A ....
Probab=48.26 E-value=17 Score=24.86 Aligned_cols=49 Identities=12% Similarity=0.222 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHH
Q 028826 9 RELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGR 61 (203)
Q Consensus 9 reLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~ 61 (203)
|+-+.++.+.+++....+..--.+.++||.-..... .+-.||||+.|+.
T Consensus 4 R~Ev~~i~~~V~~~~~~i~p~~~v~i~GSyRRGK~~----~gDiDiLIt~~~~ 52 (112)
T PF14792_consen 4 RDEVEEIEEIVKEALEKIDPGLEVEICGSYRRGKET----SGDIDILITHPDP 52 (112)
T ss_dssp HHHHHHHHHHHHHHHHCCSTT-EEEEEHHHHTT-SE----ESSEEEEEEETTC
T ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEccccccCCCc----CCCeEEEEeCCCc
Confidence 556677777777766555233345566653322221 3568999998854
No 405
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=48.26 E-value=67 Score=20.14 Aligned_cols=49 Identities=10% Similarity=0.129 Sum_probs=29.0
Q ss_pred EEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCe
Q 028826 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGAN 53 (203)
Q Consensus 3 lil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ 53 (203)
+|+..+.++..+.......|-.. |+++..-..+.+...+.......++.
T Consensus 5 ~ii~~~~~~~~~a~~~~~~Lr~~--g~~v~~d~~~~~~~~~~~~a~~~g~~ 53 (91)
T cd00860 5 VVIPVTDEHLDYAKEVAKKLSDA--GIRVEVDLRNEKLGKKIREAQLQKIP 53 (91)
T ss_pred EEEeeCchHHHHHHHHHHHHHHC--CCEEEEECCCCCHHHHHHHHHHcCCC
Confidence 45555555544555555555433 78888767777777777665444443
No 406
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=47.74 E-value=26 Score=26.54 Aligned_cols=43 Identities=23% Similarity=0.107 Sum_probs=32.0
Q ss_pred CCCccEEEEcchhHhhhhchHH-HHHHHHHhCCC--CCcEEEEeee
Q 028826 74 FRNLVILVLDEADRLLDMGFQK-QISYIISRLPK--LRRTGLFSAT 116 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~-~~~~il~~~~~--~~q~i~~SAT 116 (203)
..+.+++++||...-+|..... .+..++..+.+ ..++++.|-.
T Consensus 137 ~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~ 182 (204)
T cd03240 137 GSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHD 182 (204)
T ss_pred ccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEec
Confidence 3577999999998888887777 88888877754 4566665553
No 407
>COG0141 HisD Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=47.62 E-value=52 Score=28.12 Aligned_cols=27 Identities=19% Similarity=0.423 Sum_probs=23.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCC
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLP 27 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~ 27 (203)
+++.++|+.+|+.++...+.+....++
T Consensus 260 ~aiLvT~s~~la~~v~~~v~~~l~~l~ 286 (425)
T COG0141 260 QAILVTDSEELAEAVEAAVERQLETLP 286 (425)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHHHhcc
Confidence 578999999999999998888776654
No 408
>cd06572 Histidinol_dh Histidinol dehydrogenase, HisD, E.C 1.1.1.23. Histidinol dehydrogenase catalyzes the last two steps in the L-histidine biosynthesis pathway, which is conserved in bacteria, archaea, fungi, and plants. These last two steps are (i) the NAD-dependent oxidation of L-histidinol to L-histidinaldehyde, and (ii) the NAD-dependent oxidation of L-histidinaldehyde to L-histidine. In most fungi and in the unicellular choanoflagellate Monosiga bevicollis, the HisD domain is fused with units that catalyze the second and third biosynthesis steps in this same pathway.
Probab=47.36 E-value=50 Score=28.03 Aligned_cols=27 Identities=15% Similarity=0.402 Sum_probs=23.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCC
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLP 27 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~ 27 (203)
+++.++++.+|+.++..++.+....++
T Consensus 237 ~aiLvT~s~~la~~V~~~v~~ql~~l~ 263 (390)
T cd06572 237 QAILVTTSEELAEAVEEEVERQLAELP 263 (390)
T ss_pred eEEEEECCHHHHHHHHHHHHHHHHhCC
Confidence 478999999999999999998877653
No 409
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=47.21 E-value=65 Score=29.83 Aligned_cols=94 Identities=18% Similarity=0.260 Sum_probs=50.5
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
++|-+||.+=+..+...+.+-.... |.+-.....+.. +......+...|=..+|.... ..-+++|
T Consensus 264 iiVTAP~~~nv~~Lf~fa~~~l~~l-g~~~~v~~d~~g---~~~~~~~~~~~i~y~~P~~a~-----------~~~Dllv 328 (758)
T COG1444 264 IIVTAPTPANVQTLFEFAGKGLEFL-GYKRKVAPDALG---EIREVSGDGFRIEYVPPDDAQ-----------EEADLLV 328 (758)
T ss_pred EEEeCCCHHHHHHHHHHHHHhHHHh-CCcccccccccc---ceeeecCCceeEEeeCcchhc-----------ccCCEEE
Confidence 5788999988887777766655544 333221111100 000111122334445554322 1157999
Q ss_pred EcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecC
Q 028826 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (203)
Q Consensus 82 iDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~ 118 (203)
||||=.+ -.+.+..+++.. +.++||+|+.
T Consensus 329 VDEAAaI----plplL~~l~~~~----~rv~~sTTIh 357 (758)
T COG1444 329 VDEAAAI----PLPLLHKLLRRF----PRVLFSTTIH 357 (758)
T ss_pred EehhhcC----ChHHHHHHHhhc----CceEEEeeec
Confidence 9999765 344555555433 5688888874
No 410
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=46.77 E-value=76 Score=29.14 Aligned_cols=30 Identities=13% Similarity=0.162 Sum_probs=22.5
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVG 36 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~ 36 (203)
.|+.+|+.--+.|+.+.+.+. +++++-++.
T Consensus 457 VLvcApSNiAVDqLaeKIh~t-----gLKVvRl~a 486 (935)
T KOG1802|consen 457 VLVCAPSNIAVDQLAEKIHKT-----GLKVVRLCA 486 (935)
T ss_pred eEEEcccchhHHHHHHHHHhc-----CceEeeeeh
Confidence 588999998888888777765 566666554
No 411
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=45.94 E-value=46 Score=28.57 Aligned_cols=61 Identities=16% Similarity=0.205 Sum_probs=35.2
Q ss_pred CCccEEEEcchhHhhhhc--------hHHHHHHHHHhC----CCCCcEEEEeee-cChhHHHHHHhcCCCCeEE
Q 028826 75 RNLVILVLDEADRLLDMG--------FQKQISYIISRL----PKLRRTGLFSAT-QTEAVEELSKAGLRNPVRI 135 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~--------~~~~~~~il~~~----~~~~q~i~~SAT-~~~~v~~~~~~~l~~~~~i 135 (203)
....++.|||+|.++... .+-..+.++... ..+-++++++|| .|.++.+-+..-+....+|
T Consensus 244 ~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~kr~yi 317 (428)
T KOG0740|consen 244 LQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFVKRLYI 317 (428)
T ss_pred cCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHHHhhceeee
Confidence 456788899999998531 223333444333 234478888888 4555666555433333333
No 412
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=45.58 E-value=87 Score=25.83 Aligned_cols=64 Identities=13% Similarity=0.106 Sum_probs=35.1
Q ss_pred CCCeEEEeccH--------HHHHHHHhC-CCccCCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEe
Q 028826 50 EGANLLIGTPG--------RLYDIMERM-DVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (203)
Q Consensus 50 ~~~~ilV~Tp~--------~l~~~~~~~-~~~~l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~S 114 (203)
..||+.+-.|+ .+.++.+.. ....-+.-+++|||+||.|-... ...+-..++.-|....+++.|
T Consensus 72 ~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~A-aNaLLKtLEEPp~~~~fiL~t 144 (325)
T PRK06871 72 NHPDFHILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAA-ANALLKTLEEPRPNTYFLLQA 144 (325)
T ss_pred CCCCEEEEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHH-HHHHHHHhcCCCCCeEEEEEE
Confidence 46888877773 122222220 12224577999999999995443 333334444444455444443
No 413
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only]
Probab=45.54 E-value=1.2e+02 Score=23.55 Aligned_cols=87 Identities=20% Similarity=0.187 Sum_probs=52.6
Q ss_pred HHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHh--CCCccCCCccEEEEcchhHhhhhch
Q 028826 16 YHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER--MDVLDFRNLVILVLDEADRLLDMGF 93 (203)
Q Consensus 16 ~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~--~~~~~l~~v~~lViDEad~l~~~~~ 93 (203)
.+...++.+.. +.+|..-.|-...--+. .++..|||.|+.+.-...+-+ .+.++.++++-+-+-|+=.+...|-
T Consensus 36 ~~vA~~~~ekt-g~kVnvt~GPq~tW~~k---AkknADilfgaseqsalaia~~~~~~fs~~~i~ply~R~aiIlvkkgN 111 (252)
T COG4588 36 KDVAKKYEEKT-GIKVNVTAGPQATWNEK---AKKNADILFGASEQSALAIAEDHKDSFSEKNIQPLYLRPAIILVKKGN 111 (252)
T ss_pred HHHHHHHHHHh-CeEEEEecCCcchhhhh---hhccCceeecccHHHHHHHHHhccccccccccceeeeeceEEEecCCC
Confidence 34555665555 77877666655433332 246799999999987655543 1346677777777777665555554
Q ss_pred HHHHHHHHHhCCC
Q 028826 94 QKQISYIISRLPK 106 (203)
Q Consensus 94 ~~~~~~il~~~~~ 106 (203)
-..++.+-..+.+
T Consensus 112 PknIk~~eDll~~ 124 (252)
T COG4588 112 PKNIKGFEDLLKP 124 (252)
T ss_pred ccccccHHHHhcC
Confidence 4444444444433
No 414
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=45.21 E-value=99 Score=25.72 Aligned_cols=40 Identities=18% Similarity=0.017 Sum_probs=22.8
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEe
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~S 114 (203)
-..-+++|||+||.|-....- .+-..++.-|++.-+|+.|
T Consensus 130 ~~~~kV~iI~~ae~m~~~AaN-aLLKtLEEPp~~t~fiL~t 169 (342)
T PRK06964 130 RGGARVVVLYPAEALNVAAAN-ALLKTLEEPPPGTVFLLVS 169 (342)
T ss_pred cCCceEEEEechhhcCHHHHH-HHHHHhcCCCcCcEEEEEE
Confidence 356789999999999554322 2233344334444444443
No 415
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=45.07 E-value=20 Score=27.09 Aligned_cols=49 Identities=22% Similarity=0.281 Sum_probs=33.4
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHH
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE 122 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~ 122 (203)
+.+-+++++||.-.=+|......+..++..+.+...++++++--...+.
T Consensus 153 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~ 201 (214)
T TIGR02673 153 VNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVD 201 (214)
T ss_pred hCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 4577899999988878888888888888776433345555444333333
No 416
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.87 E-value=44 Score=30.25 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=14.0
Q ss_pred CCCccEEEEcchhHhhhh
Q 028826 74 FRNLVILVLDEADRLLDM 91 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~ 91 (203)
..+-+++||||+|.|-..
T Consensus 117 ~g~~kVIIIDEad~Lt~~ 134 (624)
T PRK14959 117 EGRYKVFIIDEAHMLTRE 134 (624)
T ss_pred cCCceEEEEEChHhCCHH
Confidence 356789999999998533
No 417
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=44.57 E-value=19 Score=30.08 Aligned_cols=30 Identities=17% Similarity=0.336 Sum_probs=19.1
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhC
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRL 104 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~ 104 (203)
+.+++++|+||+-.+ +......+...++.+
T Consensus 100 l~~~~~lIiDEism~-~~~~l~~i~~~lr~i 129 (364)
T PF05970_consen 100 LRKADVLIIDEISMV-SADMLDAIDRRLRDI 129 (364)
T ss_pred hhhheeeecccccch-hHHHHHHHHHhhhhh
Confidence 567899999999654 443444554444444
No 418
>PRK08939 primosomal protein DnaI; Reviewed
Probab=44.39 E-value=1.7e+02 Score=23.79 Aligned_cols=89 Identities=11% Similarity=0.144 Sum_probs=44.5
Q ss_pred ceEEEEEcCc--chHHHHH----HHHhCCCeEEEeccHHHHHHHHh---CCCc-----cCCCccEEEEcchhHh--hhhc
Q 028826 29 VKSMLLVGGV--EVKADVK----KIEEEGANLLIGTPGRLYDIMER---MDVL-----DFRNLVILVLDEADRL--LDMG 92 (203)
Q Consensus 29 i~~~~~~~g~--~~~~~~~----~l~~~~~~ilV~Tp~~l~~~~~~---~~~~-----~l~~v~~lViDEad~l--~~~~ 92 (203)
.+-..++|.. ....-.. .+...+..+.+.+...+..-++. .+.. .+.++.+||+||...- -+|.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e~~s~~~ 235 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVKEAPVLMLDDIGAEQMSSWV 235 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhcCCCEEEEecCCCccccHHH
Confidence 3556677643 2333222 23345666665554444433322 1221 2679999999998643 2343
Q ss_pred hHHHHHHHHHh-CCCCCcEEEEeeecC
Q 028826 93 FQKQISYIISR-LPKLRRTGLFSATQT 118 (203)
Q Consensus 93 ~~~~~~~il~~-~~~~~q~i~~SAT~~ 118 (203)
..+.+..|+.. +..... .++|+.++
T Consensus 236 ~~~ll~~Il~~R~~~~~~-ti~TSNl~ 261 (306)
T PRK08939 236 RDEVLGVILQYRMQEELP-TFFTSNFD 261 (306)
T ss_pred HHHHHHHHHHHHHHCCCe-EEEECCCC
Confidence 22344555543 223334 45555555
No 419
>TIGR03871 ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein. This protein family, a sister family to TIGR03870, is found more broadly. It occurs a range of PQQ-biosynthesizing species, not just in known methanotrophs. Interpretation of evidence by homology and by direct experimental work suggest two different roles. By homology, this family appears to be the periplasmic substrate-binding protein of an ABC transport family. However, mutational studies and direct characterization for some sequences related to this family suggests this family may act as a maturation chaperone or additional subunit of a methanol dehydrogenase-like enzyme.
Probab=44.04 E-value=56 Score=24.66 Aligned_cols=44 Identities=11% Similarity=0.020 Sum_probs=24.7
Q ss_pred HHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHH
Q 028826 20 QPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYD 64 (203)
Q Consensus 20 ~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~ 64 (203)
+.++... |+++...............+..+++|++++||++-..
T Consensus 27 ~~i~~~~-g~~i~~~~~~~~~~~~~~~l~~g~~Di~~~~~~r~~~ 70 (232)
T TIGR03871 27 QLLADDL-GLPLEYTWFPQRRGFVRNTLNAGRCDVVIGVPAGYEM 70 (232)
T ss_pred HHHHHHc-CCceEEEecCcchhhHHHHHhcCCccEEEeccCcccc
Confidence 3333444 5665444332222223345667889999999987543
No 420
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=43.89 E-value=30 Score=32.48 Aligned_cols=47 Identities=17% Similarity=0.191 Sum_probs=28.1
Q ss_pred CccEEEEcchhHhhhhch---HHHHHHHHHhCCCCCcEEEEeeecChhHH
Q 028826 76 NLVILVLDEADRLLDMGF---QKQISYIISRLPKLRRTGLFSATQTEAVE 122 (203)
Q Consensus 76 ~v~~lViDEad~l~~~~~---~~~~~~il~~~~~~~q~i~~SAT~~~~v~ 122 (203)
.-.+++|||+|.++..|. ..+...++...-..-.+.+..||-.++..
T Consensus 266 ~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r 315 (852)
T TIGR03346 266 GQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYR 315 (852)
T ss_pred CCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHHH
Confidence 356999999999985321 12333444433344556677777666543
No 421
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=43.76 E-value=92 Score=25.26 Aligned_cols=64 Identities=9% Similarity=0.120 Sum_probs=34.2
Q ss_pred CCCeEEEeccHH-------HHHHHHhC-CCccCCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEe
Q 028826 50 EGANLLIGTPGR-------LYDIMERM-DVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (203)
Q Consensus 50 ~~~~ilV~Tp~~-------l~~~~~~~-~~~~l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~S 114 (203)
..||+.+-.|+. +.++.... ....-+.-+++|||+||.|-... ...+-..++.-|.+.-+++.|
T Consensus 70 ~HPD~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~A-aNaLLKtLEEPp~~t~~iL~t 141 (290)
T PRK07276 70 EFSDVTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNA-ANSLLKVIEEPQSEIYIFLLT 141 (290)
T ss_pred CCCCeeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHH-HHHHHHHhcCCCCCeEEEEEE
Confidence 358999888853 33333321 11223566899999999995443 222333333333334344443
No 422
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=43.63 E-value=19 Score=25.72 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=29.7
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeee
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 116 (203)
..+.+++++||...=+|......+..++..+....+.+++++-
T Consensus 96 ~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh 138 (157)
T cd00267 96 LLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTH 138 (157)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 3457899999998777777777787777776444344444443
No 423
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=43.48 E-value=68 Score=25.06 Aligned_cols=51 Identities=22% Similarity=0.251 Sum_probs=34.0
Q ss_pred cHHHHHHHHHHHHHhhhcCCCceEEEEEcCcch--------HHHHHHHHhCCCeEEEecc
Q 028826 8 TRELSAQIYHVAQPFISTLPDVKSMLLVGGVEV--------KADVKKIEEEGANLLIGTP 59 (203)
Q Consensus 8 treLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~--------~~~~~~l~~~~~~ilV~Tp 59 (203)
.+.-...+.+.++++.+.. ++-++.++.|... .+..+.+.+.+.|+|||+-
T Consensus 166 ~~~~~~~i~~~i~~~r~~~-D~vIv~~HwG~e~~~~p~~~q~~~a~~lidaGaDiIiG~H 224 (250)
T PF09587_consen 166 NRPGIERIKEDIREARKKA-DVVIVSLHWGIEYENYPTPEQRELARALIDAGADIIIGHH 224 (250)
T ss_pred ccchHHHHHHHHHHHhcCC-CEEEEEeccCCCCCCCCCHHHHHHHHHHHHcCCCEEEeCC
Confidence 3444467777777776544 8899999988432 1223345567999999963
No 424
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=42.85 E-value=1.2e+02 Score=27.22 Aligned_cols=70 Identities=17% Similarity=0.251 Sum_probs=45.4
Q ss_pred EEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhCCCccCCCccE
Q 028826 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLVI 79 (203)
Q Consensus 3 lil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~ 79 (203)
||++.|. .|+.-.+.-|+.--||+.+..++|+.+......-. .....-|+++|- ... +.+||..|.|
T Consensus 317 iVF~Ssc---Kqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TD-----v~a--RGLDFpaVdw 386 (758)
T KOG0343|consen 317 IVFLSSC---KQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTD-----VAA--RGLDFPAVDW 386 (758)
T ss_pred EEEEehh---hHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeeh-----hhh--ccCCCcccce
Confidence 4555554 34444444444445689999999998876655432 235677888885 222 5788888888
Q ss_pred EEE
Q 028826 80 LVL 82 (203)
Q Consensus 80 lVi 82 (203)
+|=
T Consensus 387 ViQ 389 (758)
T KOG0343|consen 387 VIQ 389 (758)
T ss_pred EEE
Confidence 874
No 425
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=42.73 E-value=38 Score=29.28 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=23.9
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEe
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~S 114 (203)
.+-+++||||+|.|-... ...+...++..+....+|+.+
T Consensus 120 ~~~kvvIIdead~lt~~~-~n~LLk~lEep~~~~~~Il~t 158 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEA-FNSLLKTLEEPPQHVKFFLAT 158 (451)
T ss_pred CCCEEEEEecHHhhCHHH-HHHHHHHhhcCCCCceEEEEe
Confidence 567899999999985433 334444555544444444443
No 426
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=42.38 E-value=1.1e+02 Score=28.31 Aligned_cols=51 Identities=12% Similarity=0.057 Sum_probs=35.2
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHH---hCCCeEEEecc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIE---EEGANLLIGTP 59 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~---~~~~~ilV~Tp 59 (203)
+||.+.|.+-+..+.+.+.+- +++...++++.. ++...+. .+...|+|+|-
T Consensus 408 vLV~t~si~~se~ls~~L~~~-----gi~~~~Lna~q~--~rEa~ii~~ag~~g~VtIATn 461 (745)
T TIGR00963 408 VLVGTTSVEKSELLSNLLKER-----GIPHNVLNAKNH--EREAEIIAQAGRKGAVTIATN 461 (745)
T ss_pred EEEEeCcHHHHHHHHHHHHHc-----CCCeEEeeCChH--HHHHHHHHhcCCCceEEEEec
Confidence 689999999888777777664 678888888722 3333332 24578888883
No 427
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=42.31 E-value=41 Score=22.40 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=16.0
Q ss_pred ccEEEEcchhHhhhhchHHHH
Q 028826 77 LVILVLDEADRLLDMGFQKQI 97 (203)
Q Consensus 77 v~~lViDEad~l~~~~~~~~~ 97 (203)
..++++||++.+.........
T Consensus 79 ~~viiiDei~~~~~~~~~~~~ 99 (148)
T smart00382 79 PDVLILDEITSLLDAEQEALL 99 (148)
T ss_pred CCEEEEECCcccCCHHHHHHH
Confidence 689999999999766544433
No 428
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=42.13 E-value=33 Score=32.94 Aligned_cols=42 Identities=17% Similarity=0.223 Sum_probs=33.1
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeee
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 116 (203)
....++++||.+.-++......+..++..+....|+++.|--
T Consensus 1110 ~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~ 1151 (1179)
T TIGR02168 1110 KPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHN 1151 (1179)
T ss_pred CCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcC
Confidence 456899999999988888888888888888666776665444
No 429
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=42.00 E-value=91 Score=19.86 Aligned_cols=47 Identities=9% Similarity=0.033 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhC-CCeEEEeccHHH
Q 028826 11 LSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEE-GANLLIGTPGRL 62 (203)
Q Consensus 11 La~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~-~~~ilV~Tp~~l 62 (203)
+|.++.+.+++. |+++..-.++.+...+.+..... -|-++|--+.-+
T Consensus 17 ~a~~l~~~L~~~-----gi~v~~d~~~~~~~k~~~~a~~~g~p~~iiiG~~e~ 64 (94)
T PF03129_consen 17 YAQELANKLRKA-----GIRVELDDSDKSLGKQIKYADKLGIPFIIIIGEKEL 64 (94)
T ss_dssp HHHHHHHHHHHT-----TSEEEEESSSSTHHHHHHHHHHTTESEEEEEEHHHH
T ss_pred HHHHHHHHHHHC-----CCEEEEECCCCchhHHHHHHhhcCCeEEEEECchhH
Confidence 344444444443 78888888888888777765432 233344334333
No 430
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=41.82 E-value=27 Score=26.46 Aligned_cols=50 Identities=24% Similarity=0.288 Sum_probs=34.8
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHH
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEEL 124 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~ 124 (203)
+.+-+++++||.-.-+|......+..++..+... .++++++--+..+..+
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~ 198 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKG-RSIILTTHSMDEAEAL 198 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEcCCHHHHHHh
Confidence 5678999999988888888888888888877654 4555544443333333
No 431
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=41.45 E-value=43 Score=26.10 Aligned_cols=40 Identities=23% Similarity=0.125 Sum_probs=30.8
Q ss_pred CccEEEEcchhHhhhhchHHHHHHHHHhCCC-CCcEEEEee
Q 028826 76 NLVILVLDEADRLLDMGFQKQISYIISRLPK-LRRTGLFSA 115 (203)
Q Consensus 76 ~v~~lViDEad~l~~~~~~~~~~~il~~~~~-~~q~i~~SA 115 (203)
.-+++++||...-++......+..++..+.. ..++++.|-
T Consensus 177 ~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH 217 (247)
T cd03275 177 PAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISL 217 (247)
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEEC
Confidence 4689999999988888888888888887754 456666554
No 432
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=41.28 E-value=62 Score=28.33 Aligned_cols=68 Identities=12% Similarity=0.079 Sum_probs=45.1
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHH---HHHhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~---~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
++|.+||---..-.++.++ +. ++.|..++|+......-+ ...+...-|+++|--. . +.+|+-+|.
T Consensus 333 iiVF~sT~~~vk~~~~lL~----~~-dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVa------A-RGlD~P~V~ 400 (543)
T KOG0342|consen 333 IIVFFSTCMSVKFHAELLN----YI-DLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVA------A-RGLDIPDVD 400 (543)
T ss_pred EEEEechhhHHHHHHHHHh----hc-CCchhhhhcCCcccccchHHHHHhhcccceEEecchh------h-ccCCCCCce
Confidence 4667777655544444444 33 788999999876544332 2334667899998633 2 678999999
Q ss_pred EEE
Q 028826 79 ILV 81 (203)
Q Consensus 79 ~lV 81 (203)
++|
T Consensus 401 ~Vv 403 (543)
T KOG0342|consen 401 WVV 403 (543)
T ss_pred EEE
Confidence 988
No 433
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.19 E-value=65 Score=28.07 Aligned_cols=17 Identities=18% Similarity=0.266 Sum_probs=13.9
Q ss_pred CCCccEEEEcchhHhhh
Q 028826 74 FRNLVILVLDEADRLLD 90 (203)
Q Consensus 74 l~~v~~lViDEad~l~~ 90 (203)
..+-+++|+||+|.|-.
T Consensus 115 ~~~~kVvIIDE~h~Lt~ 131 (472)
T PRK14962 115 EGKYKVYIIDEVHMLTK 131 (472)
T ss_pred cCCeEEEEEEChHHhHH
Confidence 45678999999999854
No 434
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=40.97 E-value=1.1e+02 Score=25.32 Aligned_cols=64 Identities=14% Similarity=0.175 Sum_probs=35.2
Q ss_pred CCCeEEEeccHH---------HHHHHHhC-CCccCCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEe
Q 028826 50 EGANLLIGTPGR---------LYDIMERM-DVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (203)
Q Consensus 50 ~~~~ilV~Tp~~---------l~~~~~~~-~~~~l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~S 114 (203)
..||+.+-+|+. +.++.... ....-+.-+.+|||+||.|-... ...+-..++.-|...-+++.|
T Consensus 72 ~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~A-aNaLLKtLEEPp~~t~fiL~t 145 (334)
T PRK07993 72 THPDYYTLTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAA-ANALLKTLEEPPENTWFFLAC 145 (334)
T ss_pred CCCCEEEEecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHH-HHHHHHHhcCCCCCeEEEEEE
Confidence 458998888863 22222210 12234678999999999995443 223333333334444444444
No 435
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=40.67 E-value=21 Score=26.18 Aligned_cols=45 Identities=18% Similarity=0.188 Sum_probs=32.2
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCC-CcEEEEeeecC
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKL-RRTGLFSATQT 118 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~-~q~i~~SAT~~ 118 (203)
..+-+++++||--.=+|......+..++..+.+. ...+++++.-.
T Consensus 116 ~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 161 (178)
T cd03229 116 AMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL 161 (178)
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 5678999999987777887888888888777543 34555554433
No 436
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=40.66 E-value=1.1e+02 Score=26.21 Aligned_cols=64 Identities=25% Similarity=0.247 Sum_probs=43.5
Q ss_pred CccEEEEcchhHhhhhc--hHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccC
Q 028826 76 NLVILVLDEADRLLDMG--FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAE 140 (203)
Q Consensus 76 ~v~~lViDEad~l~~~~--~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~ 140 (203)
..-++|+|-||.+-|.+ ..+.+.++-..++...-.+++|++..+. ....+....++..+....-
T Consensus 115 ~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~-~y~~n~g~~~i~~l~fP~Y 180 (438)
T KOG2543|consen 115 QKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEK-QYLINTGTLEIVVLHFPQY 180 (438)
T ss_pred ceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HhhcccCCCCceEEecCCC
Confidence 35689999999987655 4555666666677777789999998864 2222334456666666553
No 437
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=40.61 E-value=62 Score=29.96 Aligned_cols=46 Identities=17% Similarity=0.343 Sum_probs=29.8
Q ss_pred EEeccHHHHHHHHhCCCccCCCccEEEEcchhHhhhhchHHHHHHHHHhC
Q 028826 55 LIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRL 104 (203)
Q Consensus 55 lV~Tp~~l~~~~~~~~~~~l~~v~~lViDEad~l~~~~~~~~~~~il~~~ 104 (203)
|=+-|+++.+.++..+.-+ -++.+||+|.+-.....+.-..+++.+
T Consensus 488 VGAMPGkiIq~LK~v~t~N----PliLiDEvDKlG~g~qGDPasALLElL 533 (906)
T KOG2004|consen 488 VGAMPGKIIQCLKKVKTEN----PLILIDEVDKLGSGHQGDPASALLELL 533 (906)
T ss_pred eccCChHHHHHHHhhCCCC----ceEEeehhhhhCCCCCCChHHHHHHhc
Confidence 3345999999998743333 378899999997432334444555555
No 438
>PRK10865 protein disaggregation chaperone; Provisional
Probab=40.43 E-value=36 Score=32.05 Aligned_cols=46 Identities=17% Similarity=0.156 Sum_probs=27.0
Q ss_pred ccEEEEcchhHhhhhc---hHHHHHHHHHhCCCCCcEEEEeeecChhHH
Q 028826 77 LVILVLDEADRLLDMG---FQKQISYIISRLPKLRRTGLFSATQTEAVE 122 (203)
Q Consensus 77 v~~lViDEad~l~~~~---~~~~~~~il~~~~~~~q~i~~SAT~~~~v~ 122 (203)
-.+++|||+|.+...| -..+...++...-..-.+.+..||-+++..
T Consensus 272 ~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r 320 (857)
T PRK10865 272 NVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYR 320 (857)
T ss_pred CeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHHH
Confidence 3489999999998432 112333444333234466666677666543
No 439
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=40.41 E-value=2.3e+02 Score=24.06 Aligned_cols=55 Identities=9% Similarity=0.033 Sum_probs=36.5
Q ss_pred CCCccEEEEcchhHhhhh-chHHHHHHHHHhCCCC-CcEEEEeeecChh-HHHHHHhc
Q 028826 74 FRNLVILVLDEADRLLDM-GFQKQISYIISRLPKL-RRTGLFSATQTEA-VEELSKAG 128 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~-~~~~~~~~il~~~~~~-~q~i~~SAT~~~~-v~~~~~~~ 128 (203)
+.+.++++||++.++... .....+..++...... .-++.+|||.... +.+..+.+
T Consensus 252 ~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~ 309 (388)
T PRK12723 252 SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQF 309 (388)
T ss_pred hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHh
Confidence 367889999999887532 1345666666655433 4568889998654 55566666
No 440
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=40.41 E-value=1.9e+02 Score=23.07 Aligned_cols=16 Identities=31% Similarity=0.372 Sum_probs=12.6
Q ss_pred CCccEEEEcchhHhhh
Q 028826 75 RNLVILVLDEADRLLD 90 (203)
Q Consensus 75 ~~v~~lViDEad~l~~ 90 (203)
..-.++++||+|.+..
T Consensus 80 ~~~~vl~iDEi~~l~~ 95 (305)
T TIGR00635 80 EEGDVLFIDEIHRLSP 95 (305)
T ss_pred ccCCEEEEehHhhhCH
Confidence 3446999999999854
No 441
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=40.32 E-value=35 Score=29.51 Aligned_cols=54 Identities=15% Similarity=0.262 Sum_probs=40.9
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHH---HHHHHhCCCeEEEeccH
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKAD---VKKIEEEGANLLIGTPG 60 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~---~~~l~~~~~~ilV~Tp~ 60 (203)
.||.+.|-+-+..+.-.++.| |++.+.+.|....... .++..++-.||+|+|-+
T Consensus 271 sliFVNtIdr~YrLkLfLeqF-----GiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~ 327 (569)
T KOG0346|consen 271 SLIFVNTIDRCYRLKLFLEQF-----GIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDD 327 (569)
T ss_pred eEEEEechhhhHHHHHHHHHh-----CcHhhhhcccccccchhhHHHHhhCcceeEEEEccC
Confidence 589999999999888888887 7888888877654433 33443466899999983
No 442
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.21 E-value=44 Score=28.23 Aligned_cols=41 Identities=12% Similarity=0.087 Sum_probs=24.0
Q ss_pred cCCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEe
Q 028826 73 DFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (203)
Q Consensus 73 ~l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~S 114 (203)
...+-+++||||+|.|-.... ..+...++..+....+|+.+
T Consensus 124 ~~~~~kvvIIdea~~l~~~~~-~~LLk~LEep~~~t~~Il~t 164 (397)
T PRK14955 124 QKGRYRVYIIDEVHMLSIAAF-NAFLKTLEEPPPHAIFIFAT 164 (397)
T ss_pred hcCCeEEEEEeChhhCCHHHH-HHHHHHHhcCCCCeEEEEEe
Confidence 356778999999999854332 23333444444444444443
No 443
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=39.94 E-value=42 Score=26.73 Aligned_cols=41 Identities=12% Similarity=0.166 Sum_probs=30.8
Q ss_pred CccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeee
Q 028826 76 NLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (203)
Q Consensus 76 ~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 116 (203)
+-+++++||...-++......+..++..+....++++.|-.
T Consensus 192 ~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~ 232 (276)
T cd03241 192 AVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHL 232 (276)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEech
Confidence 78899999998878877777777777777555566665553
No 444
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=39.44 E-value=42 Score=22.29 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=27.4
Q ss_pred CceEEEEEcCcchHHHHHHHHhCCCeEEEeccHH
Q 028826 28 DVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGR 61 (203)
Q Consensus 28 ~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~ 61 (203)
+.++..+-||.-.....+.+.+.+++|.|-+|+-
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 6677777777777788888888899999999986
No 445
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=39.17 E-value=30 Score=26.85 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=31.6
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeec
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~ 117 (203)
..+-+++++||.-.-+|......+..++..+......+++++.-
T Consensus 160 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~ 203 (250)
T PRK11264 160 AMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHE 203 (250)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 45678999999888888888888888887775434455554433
No 446
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=39.17 E-value=28 Score=25.69 Aligned_cols=43 Identities=28% Similarity=0.430 Sum_probs=30.5
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeee
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 116 (203)
+.+-+++++||.-.=+|......+..++..+.....++++++-
T Consensus 120 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh 162 (182)
T cd03215 120 ARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISS 162 (182)
T ss_pred ccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 4678899999987777877788888887776433344555443
No 447
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=39.13 E-value=70 Score=28.18 Aligned_cols=18 Identities=22% Similarity=0.215 Sum_probs=14.1
Q ss_pred CCCccEEEEcchhHhhhh
Q 028826 74 FRNLVILVLDEADRLLDM 91 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~ 91 (203)
..+-+++||||+|.|-..
T Consensus 126 ~~~~KVvIIDEa~~Ls~~ 143 (507)
T PRK06645 126 QGKHKIFIIDEVHMLSKG 143 (507)
T ss_pred cCCcEEEEEEChhhcCHH
Confidence 456789999999988543
No 448
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=39.08 E-value=23 Score=26.26 Aligned_cols=89 Identities=15% Similarity=0.126 Sum_probs=44.4
Q ss_pred ceEEEEEcCc--chHHHHH----HHHhCCCeEEEeccHHHHHHHHhC---CCc-----cCCCccEEEEcchhHhh-hhch
Q 028826 29 VKSMLLVGGV--EVKADVK----KIEEEGANLLIGTPGRLYDIMERM---DVL-----DFRNLVILVLDEADRLL-DMGF 93 (203)
Q Consensus 29 i~~~~~~~g~--~~~~~~~----~l~~~~~~ilV~Tp~~l~~~~~~~---~~~-----~l~~v~~lViDEad~l~-~~~~ 93 (203)
-+...++|.. ....-.. .+...+..+++.+...|...++.. +.. .+.++++||+||.-..- +...
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~~~~~~~~ 126 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRVDLLILDDLGYEPLSEWE 126 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTSS---HHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccccccEecccccceeeecccc
Confidence 3456666643 2322222 233467888888888888887751 111 26689999999975432 1112
Q ss_pred HHHHHHHHHhCCCCCcEEEEeeecC
Q 028826 94 QKQISYIISRLPKLRRTGLFSATQT 118 (203)
Q Consensus 94 ~~~~~~il~~~~~~~q~i~~SAT~~ 118 (203)
.+.+..++..--.+..+|+ ++.++
T Consensus 127 ~~~l~~ii~~R~~~~~tIi-TSN~~ 150 (178)
T PF01695_consen 127 AELLFEIIDERYERKPTII-TSNLS 150 (178)
T ss_dssp HHCTHHHHHHHHHT-EEEE-EESS-
T ss_pred cccchhhhhHhhcccCeEe-eCCCc
Confidence 3334444443323334444 44454
No 449
>PRK14873 primosome assembly protein PriA; Provisional
Probab=38.89 E-value=2.8e+02 Score=25.53 Aligned_cols=62 Identities=23% Similarity=0.247 Sum_probs=37.2
Q ss_pred HHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEEEcchhHhhh
Q 028826 13 AQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLD 90 (203)
Q Consensus 13 ~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lViDEad~l~~ 90 (203)
.++.+++.++ +|+.++..+.++ .....+ ..+++|+|||++.. -++. .++.++++=++|.++.
T Consensus 441 er~eeeL~~~---FP~~~V~r~d~d----~~l~~~-~~~~~IlVGTqgae-pm~~-------g~~~lV~ildaD~~L~ 502 (665)
T PRK14873 441 RRTAEELGRA---FPGVPVVTSGGD----QVVDTV-DAGPALVVATPGAE-PRVE-------GGYGAALLLDAWALLG 502 (665)
T ss_pred HHHHHHHHHH---CCCCCEEEEChH----HHHHhh-ccCCCEEEECCCCc-cccc-------CCceEEEEEcchhhhc
Confidence 4455555554 556777654432 233444 45899999999631 0111 2567888888998774
No 450
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=38.79 E-value=27 Score=25.26 Aligned_cols=42 Identities=26% Similarity=0.296 Sum_probs=29.7
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEee
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SA 115 (203)
..+-+++++||.-.=+|......+..++..+.....++++++
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~s 139 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFIS 139 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 456789999998777787778888888877743333444443
No 451
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=38.65 E-value=39 Score=27.69 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=21.6
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEE
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLF 113 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~ 113 (203)
..+-+++|+||+|.+-...+ ..+...+...|....+|+.
T Consensus 115 ~~~~~vviidea~~l~~~~~-~~Ll~~le~~~~~~~lIl~ 153 (355)
T TIGR02397 115 SGKYKVYIIDEVHMLSKSAF-NALLKTLEEPPEHVVFILA 153 (355)
T ss_pred cCCceEEEEeChhhcCHHHH-HHHHHHHhCCccceeEEEE
Confidence 45667999999998854322 2233333443444444443
No 452
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=38.61 E-value=2e+02 Score=28.19 Aligned_cols=57 Identities=11% Similarity=0.241 Sum_probs=33.8
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhh-cCC---CceEEEEEcCcchHH-HHHHHHhC-CCeEEEec
Q 028826 2 GMIISPTRELSAQIYHVAQPFIS-TLP---DVKSMLLVGGVEVKA-DVKKIEEE-GANLLIGT 58 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~-~~~---~i~~~~~~~g~~~~~-~~~~l~~~-~~~ilV~T 58 (203)
+||+|.+++=|..+.+.+++... ..+ +-.+..++|+.+... ..+...++ .|.|+|++
T Consensus 701 tiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~~~~~li~~Fk~~~~p~IlVsv 763 (1123)
T PRK11448 701 TLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSIDKPDQLIRRFKNERLPNIVVTV 763 (1123)
T ss_pred EEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCccchHHHHHHHhCCCCCeEEEEe
Confidence 68999999999888888776432 112 234556777654332 22233222 24677765
No 453
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=38.51 E-value=51 Score=29.78 Aligned_cols=62 Identities=18% Similarity=0.229 Sum_probs=38.9
Q ss_pred CeEEEeccHHHHH--HH--HhCCCccCCCccEEEEcchhHhhhhchHHHHHHHHHhCC-CCCcEEEEeeec
Q 028826 52 ANLLIGTPGRLYD--IM--ERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSATQ 117 (203)
Q Consensus 52 ~~ilV~Tp~~l~~--~~--~~~~~~~l~~v~~lViDEad~l~~~~~~~~~~~il~~~~-~~~q~i~~SAT~ 117 (203)
--|.+.-|+.=.. +. .+.+++.=++..++++|||+-+ . .+.+..|+..+. +++.+|+.|+|-
T Consensus 271 ~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI-~---~~a~~tilgfm~q~~~KiIfISS~N 337 (668)
T PHA03372 271 NVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFI-K---KDAFNTILGFLAQNTTKIIFISSTN 337 (668)
T ss_pred cEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhcc-C---HHHHHHhhhhhcccCceEEEEeCCC
Confidence 3566666655311 11 1125566678999999999965 2 334555666664 567888888884
No 454
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=38.28 E-value=36 Score=32.01 Aligned_cols=44 Identities=23% Similarity=0.235 Sum_probs=25.4
Q ss_pred cEEEEcchhHhhhhc---hHHHHHHHHHhCCCCCcEEEEeeecChhH
Q 028826 78 VILVLDEADRLLDMG---FQKQISYIISRLPKLRRTGLFSATQTEAV 121 (203)
Q Consensus 78 ~~lViDEad~l~~~~---~~~~~~~il~~~~~~~q~i~~SAT~~~~v 121 (203)
-.++|||+|.+...| -..+...++...-..-.+.+..||-+++.
T Consensus 282 ~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~ 328 (852)
T TIGR03345 282 IILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTWAEY 328 (852)
T ss_pred eEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCHHHH
Confidence 488999999998532 12233233332223456667777766543
No 455
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=38.18 E-value=39 Score=28.78 Aligned_cols=40 Identities=25% Similarity=0.268 Sum_probs=23.9
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecCh
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~ 119 (203)
.+=-++.+||+|++-... . ..++..+ .+-.+++..||-.+
T Consensus 103 gr~tiLflDEIHRfnK~Q-Q---D~lLp~v-E~G~iilIGATTEN 142 (436)
T COG2256 103 GRRTILFLDEIHRFNKAQ-Q---DALLPHV-ENGTIILIGATTEN 142 (436)
T ss_pred CCceEEEEehhhhcChhh-h---hhhhhhh-cCCeEEEEeccCCC
Confidence 345688999999984332 1 1223333 35667777777543
No 456
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.11 E-value=43 Score=29.27 Aligned_cols=37 Identities=16% Similarity=0.156 Sum_probs=21.5
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEE
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTG 111 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i 111 (203)
.++-+.+||||||.|....+ ..+...+...|...-++
T Consensus 117 ~~~~KVvIIDEad~Lt~~a~-naLLk~LEepp~~~v~I 153 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEAF-NALLKTLEEPPPRTIFI 153 (486)
T ss_pred cCCeeEEEEEChhhcCHHHH-HHHHHHHhcCCCCeEEE
Confidence 45678999999998854433 33333444443333333
No 457
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium, the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate. 6PGL converts 6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the second step of the oxidative phase of the pentose phosphate pathway.
Probab=38.04 E-value=1.1e+02 Score=22.26 Aligned_cols=137 Identities=14% Similarity=0.003 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEEEcchhHh
Q 028826 9 RELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRL 88 (203)
Q Consensus 9 reLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lViDEad~l 88 (203)
+++|..+...+++....- +.-+..+.||.+...-.+.+.+ ... .. +.+++.++-.||=-..
T Consensus 2 ~~~a~~i~~~i~~~~~~~-~~~~i~lsgGsTp~~~y~~L~~---------------~~~--~~-~w~~v~~f~~DEr~v~ 62 (169)
T cd00458 2 KEALKFIEDKXEKLLEEK-DDMVIGLGTGSTPAYFYKLLGE---------------KLK--RG-EISDIVGFPTDERYVP 62 (169)
T ss_pred hHHHHHHHHHHHHHHHhC-CCEEEEECCCccHHHHHHHHHh---------------hhh--hC-CccceEEEECccccCC
Confidence 566777777666654332 4445566666554433333211 111 12 6788999999993222
Q ss_pred hh--hchHHHHH-HHHHhCCC-CCcEEEEeeecC--hhHHHHHHh---cCCCCeEEEeccCcccccccchhhhhccCCCC
Q 028826 89 LD--MGFQKQIS-YIISRLPK-LRRTGLFSATQT--EAVEELSKA---GLRNPVRIEVRAESKSHHASASSQQLASSKTP 159 (203)
Q Consensus 89 ~~--~~~~~~~~-~il~~~~~-~~q~i~~SAT~~--~~v~~~~~~---~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (203)
.+ ..+...++ .++...+. ..++-.+-...+ .......+. ....+..+..+.+
T Consensus 63 ~~~~~Sn~~~~~~~ll~~~~i~~~~v~~~~~~~~~~~~a~~y~~~~~~~~~~~Dl~lLG~G------------------- 123 (169)
T cd00458 63 LDSDQSNFRQAKLLAFEHDIIPASNVHYVDTSLPIEKACEKYEREILDQVDAIDLAVDGAG------------------- 123 (169)
T ss_pred CCCchHHHHHHHHHhhccCCCCHHHeecCCCCCCcHHHHHHHHHHHHhhCCCCCEEEECcC-------------------
Confidence 11 11233333 45555432 223333321111 112222221 1122233333332
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHh
Q 028826 160 LGLHLEYLECESDKKPSQLVDLLI 183 (203)
Q Consensus 160 ~~i~~~~~~~~~~~k~~~l~~ll~ 183 (203)
..-++.++.+.+++|.+.+.++++
T Consensus 124 ~~a~~i~~~~~G~~Ka~~l~~~~~ 147 (169)
T cd00458 124 YRAGTVIVLVDGRKKVDYLCQNTE 147 (169)
T ss_pred ccccEEEEEecChhHHHHHHHHhc
Confidence 233567777889999999999885
No 458
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=37.87 E-value=1.3e+02 Score=24.81 Aligned_cols=65 Identities=9% Similarity=0.111 Sum_probs=35.2
Q ss_pred CCCeEEEeccHH---------HHHHHHhC-CCccCCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEee
Q 028826 50 EGANLLIGTPGR---------LYDIMERM-DVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (203)
Q Consensus 50 ~~~~ilV~Tp~~---------l~~~~~~~-~~~~l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SA 115 (203)
..||+.+-.|+. +.++.... .....+.-+++|||+||.|-... ...+-..++.-|.+.-+++.|.
T Consensus 72 ~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~A-aNaLLKtLEEPp~~t~fiL~t~ 146 (319)
T PRK06090 72 NHPDLHVIKPEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESA-SNALLKTLEEPAPNCLFLLVTH 146 (319)
T ss_pred CCCCEEEEecCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHH-HHHHHHHhcCCCCCeEEEEEEC
Confidence 468998887752 12222210 12234568999999999995443 2333333444444444444433
No 459
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=37.66 E-value=32 Score=25.87 Aligned_cols=43 Identities=23% Similarity=0.253 Sum_probs=30.1
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeee
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 116 (203)
+.+-+++++||.-.-+|......+..++..+.+....+++++.
T Consensus 144 ~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH 186 (210)
T cd03269 144 IHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTH 186 (210)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 4567899999988777877778887777776433334555443
No 460
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=37.65 E-value=1.5e+02 Score=24.20 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=20.8
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhC
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRL 104 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~ 104 (203)
....+++++||||.|.-.+ .+.++.+....
T Consensus 163 ~~~~~~iivDEA~~L~~~a-le~lr~i~d~~ 192 (297)
T COG2842 163 RDTVRLIIVDEADRLPYRA-LEELRRIHDKT 192 (297)
T ss_pred ccCcceeeeehhhccChHH-HHHHHHHHHhh
Confidence 4678999999999985443 34455555544
No 461
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=37.51 E-value=1.1e+02 Score=24.89 Aligned_cols=55 Identities=18% Similarity=0.326 Sum_probs=33.8
Q ss_pred cCcHHHHHHHHHHHHHhhhcCCCceEEEEEcC--cc-hHHHHHHHHhCCCeEEEeccHHH
Q 028826 6 SPTRELSAQIYHVAQPFISTLPDVKSMLLVGG--VE-VKADVKKIEEEGANLLIGTPGRL 62 (203)
Q Consensus 6 ~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g--~~-~~~~~~~l~~~~~~ilV~Tp~~l 62 (203)
=||+.|+. ++-..+.++ .+.+++++.+-.+ .. .......+..-+.++.+++|..+
T Consensus 136 HPtQ~LaD-l~Ti~e~~G-~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~ 193 (305)
T PRK00856 136 HPTQALLD-LLTIREEFG-RLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTL 193 (305)
T ss_pred CcHHHHHH-HHHHHHHhC-CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCccc
Confidence 38999985 555555664 4557777655443 12 22223334446899999999775
No 462
>PRK09762 galactosamine-6-phosphate isomerase; Provisional
Probab=37.27 E-value=2e+02 Score=22.34 Aligned_cols=88 Identities=17% Similarity=0.123 Sum_probs=43.0
Q ss_pred ccHHHHHHHHh---CCCccCCCccEEEEcchhHhh-h--hchHHHHH-HHHHhCC-CCCcEEEEeeecC--hhHHH---H
Q 028826 58 TPGRLYDIMER---MDVLDFRNLVILVLDEADRLL-D--MGFQKQIS-YIISRLP-KLRRTGLFSATQT--EAVEE---L 124 (203)
Q Consensus 58 Tp~~l~~~~~~---~~~~~l~~v~~lViDEad~l~-~--~~~~~~~~-~il~~~~-~~~q~i~~SAT~~--~~v~~---~ 124 (203)
||..+++.+.. ...++.+++.++-+||--.+- + ..+...++ .++..++ +..|+..+-.+.. .+..+ .
T Consensus 39 tP~~~y~~L~~~~~~~~l~w~~v~~f~~DE~v~vp~~~~~Sn~~~~~~~ll~~~~i~~~~~~~~~~~~~~~~~~~~y~~~ 118 (232)
T PRK09762 39 TPLLTYHYLVEKIHQQQVDVSQLTFVKLDEWVDLPLTMPGTCETFLQQHIVQPLGLREDQLISFRSEEINETECERVTNL 118 (232)
T ss_pred CHHHHHHHHHHHHhhcCCCHHHeEEEcCcEEecCCCCccHHHHHHHHHHhcCCCCCCHHHEECCCCCcccHHHHHHHHHH
Confidence 55555554442 157899999999999942222 1 12333343 4555543 2335554432211 11222 2
Q ss_pred HHhcCCCCeEEEeccCcccccc
Q 028826 125 SKAGLRNPVRIEVRAESKSHHA 146 (203)
Q Consensus 125 ~~~~l~~~~~i~~~~~~~~~~~ 146 (203)
++.+ .....+..+-+.++|-+
T Consensus 119 i~~~-~~~Dl~lLGmG~DGH~A 139 (232)
T PRK09762 119 IARK-GGLDLCVLGLGKNGHLG 139 (232)
T ss_pred HHhc-CCCCEEEEccCCCCcee
Confidence 2222 23345555555555555
No 463
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=37.13 E-value=2.5e+02 Score=26.46 Aligned_cols=111 Identities=14% Similarity=0.186 Sum_probs=57.5
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcC-cchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCC--Ccc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGG-VEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFR--NLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g-~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~--~v~ 78 (203)
+||+.|+++...++++.+... ...+ ..-|. .+...-.+...+.+.-|++|| +.++ .++|+. ...
T Consensus 650 ~LVLFtS~~~l~~v~~~l~~~-----~~~~-l~Qg~~~~~~~l~~~F~~~~~~vLlG~-~sFw------EGVD~p~~~~~ 716 (820)
T PRK07246 650 ILVLFNSKKHLLAVSDLLDQW-----QVSH-LAQEKNGTAYNIKKRFDRGEQQILLGL-GSFW------EGVDFVQADRM 716 (820)
T ss_pred EEEEECcHHHHHHHHHHHhhc-----CCcE-EEeCCCccHHHHHHHHHcCCCeEEEec-chhh------CCCCCCCCCeE
Confidence 689999999999888877643 2333 22232 223323344434556799999 4444 356652 455
Q ss_pred EEEEcchhHhh-hhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhc
Q 028826 79 ILVLDEADRLL-DMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAG 128 (203)
Q Consensus 79 ~lViDEad~l~-~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~ 128 (203)
.+||+ +|- ..--.+.++...+.+...-.--+..-++|..+..+....
T Consensus 717 ~viI~---kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~ 764 (820)
T PRK07246 717 IEVIT---RLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAI 764 (820)
T ss_pred EEEEe---cCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHh
Confidence 55653 332 111122222222222211122345667787766665544
No 464
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=36.96 E-value=30 Score=26.17 Aligned_cols=43 Identities=28% Similarity=0.356 Sum_probs=30.6
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeee
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 116 (203)
..+-+++++||.-.=+|......+..++..+......+++++.
T Consensus 152 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH 194 (218)
T cd03266 152 VHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTH 194 (218)
T ss_pred hcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 4677899999988778887788888888777433334555443
No 465
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=36.81 E-value=2.6e+02 Score=23.63 Aligned_cols=55 Identities=22% Similarity=0.233 Sum_probs=30.9
Q ss_pred CCCccEEEEcchhHhh-hhchHHHHHHHHHhCCCCCcEEEEeeecChhH-HHHHHhc
Q 028826 74 FRNLVILVLDEADRLL-DMGFQKQISYIISRLPKLRRTGLFSATQTEAV-EELSKAG 128 (203)
Q Consensus 74 l~~v~~lViDEad~l~-~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v-~~~~~~~ 128 (203)
+.+.++++||.+-..- +....+.+..+........-++++|||..... .+.++.|
T Consensus 213 l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f 269 (374)
T PRK14722 213 LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAY 269 (374)
T ss_pred hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHH
Confidence 4567899999996542 22233333333222223344788899986543 4455544
No 466
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=36.76 E-value=56 Score=24.73 Aligned_cols=42 Identities=29% Similarity=0.162 Sum_probs=30.1
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEee
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SA 115 (203)
+.+-+++++||.-.=+|......+..++..+.....+++.|-
T Consensus 155 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh 196 (221)
T cd03244 155 LRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAH 196 (221)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeC
Confidence 456789999998877787778888888887755444444433
No 467
>PF14459 Prok-E2_C: Prokaryotic E2 family C
Probab=36.56 E-value=1.2e+02 Score=20.75 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=20.8
Q ss_pred EEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcC
Q 028826 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGG 37 (203)
Q Consensus 3 lil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g 37 (203)
|++.|.-+-+.-+.+.+.+|+... +-++..--.|
T Consensus 30 l~ilp~g~as~~~a~~l~~LA~sI-Np~I~i~r~G 63 (131)
T PF14459_consen 30 LCILPSGEASSFQAQNLQSLARSI-NPRIEIRRSG 63 (131)
T ss_pred EEEeecchhHHHHHHHHHHHHHhc-CCCeEEEecC
Confidence 567777777766677777776655 4444443333
No 468
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=36.46 E-value=56 Score=30.15 Aligned_cols=43 Identities=19% Similarity=0.239 Sum_probs=24.2
Q ss_pred cEEEEcchhHhhhhch----HHHHHHHHHhCCCCCcEEEEeeecChh
Q 028826 78 VILVLDEADRLLDMGF----QKQISYIISRLPKLRRTGLFSATQTEA 120 (203)
Q Consensus 78 ~~lViDEad~l~~~~~----~~~~~~il~~~~~~~q~i~~SAT~~~~ 120 (203)
.++++||+|.++..|. ..+...++...-..-.+.+..||-+.+
T Consensus 276 ~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e 322 (731)
T TIGR02639 276 AILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEE 322 (731)
T ss_pred eEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHH
Confidence 4899999999985431 122333333222334566666776543
No 469
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=36.45 E-value=1.4e+02 Score=28.08 Aligned_cols=51 Identities=12% Similarity=0.042 Sum_probs=36.4
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHH---hCCCeEEEecc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIE---EEGANLLIGTP 59 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~---~~~~~ilV~Tp 59 (203)
+||.+.|.+-+..+...+.+. +++...+++. ..++...+. .+...|+|+|-
T Consensus 433 VLIft~Si~~se~Ls~~L~~~-----gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATN 486 (830)
T PRK12904 433 VLVGTVSIEKSELLSKLLKKA-----GIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATN 486 (830)
T ss_pred EEEEeCcHHHHHHHHHHHHHC-----CCceEeccCc--hHHHHHHHHHhcCCCceEEEecc
Confidence 789999999988887777664 7888888885 223333332 25678999883
No 470
>PF14516 AAA_35: AAA-like domain
Probab=36.31 E-value=34 Score=28.14 Aligned_cols=34 Identities=29% Similarity=0.506 Sum_probs=20.0
Q ss_pred EeccHHHHHHHHhCCCc-cCCCccEEEEcchhHhhh
Q 028826 56 IGTPGRLYDIMERMDVL-DFRNLVILVLDEADRLLD 90 (203)
Q Consensus 56 V~Tp~~l~~~~~~~~~~-~l~~v~~lViDEad~l~~ 90 (203)
++.+.++..++.. -.+ ....-=++++||+|.+++
T Consensus 107 ~~~~~~~~~~~~~-~ll~~~~~~lVL~iDEiD~l~~ 141 (331)
T PF14516_consen 107 IGSKISCTEYFEE-YLLKQIDKPLVLFIDEIDRLFE 141 (331)
T ss_pred cCChhhHHHHHHH-HHHhcCCCCEEEEEechhhhcc
Confidence 4455555555543 111 112334899999999987
No 471
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=36.19 E-value=42 Score=31.82 Aligned_cols=32 Identities=25% Similarity=0.478 Sum_probs=23.3
Q ss_pred eEEEeccHHHHHHHHhCCCccCCCccEEEEcchhHh
Q 028826 53 NLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRL 88 (203)
Q Consensus 53 ~ilV~Tp~~l~~~~~~~~~~~l~~v~~lViDEad~l 88 (203)
-|+.+|-+-++.++.. + +..+.++++||.|..
T Consensus 474 ~i~fctvgvllr~~e~-g---lrg~sh~i~deiher 505 (1282)
T KOG0921|consen 474 SIMFCTVGVLLRMMEN-G---LRGISHVIIDEIHER 505 (1282)
T ss_pred ceeeeccchhhhhhhh-c---ccccccccchhhhhh
Confidence 4666677777777765 3 456789999999975
No 472
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=36.18 E-value=58 Score=29.96 Aligned_cols=46 Identities=22% Similarity=0.321 Sum_probs=31.3
Q ss_pred EEeccHHHHHHHHhCCCccCCCccEEEEcchhHhhhhchHHHHHHHHHhC
Q 028826 55 LIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRL 104 (203)
Q Consensus 55 lV~Tp~~l~~~~~~~~~~~l~~v~~lViDEad~l~~~~~~~~~~~il~~~ 104 (203)
|=+=|||+.+-++..+..+ -++++||+|.|-+....+.-..+++-+
T Consensus 400 IGamPGrIiQ~mkka~~~N----Pv~LLDEIDKm~ss~rGDPaSALLEVL 445 (782)
T COG0466 400 IGAMPGKIIQGMKKAGVKN----PVFLLDEIDKMGSSFRGDPASALLEVL 445 (782)
T ss_pred cccCChHHHHHHHHhCCcC----CeEEeechhhccCCCCCChHHHHHhhc
Confidence 3345999999888744444 378999999997654444445555555
No 473
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.15 E-value=57 Score=27.07 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=14.3
Q ss_pred CCCccEEEEcchhHhhhh
Q 028826 74 FRNLVILVLDEADRLLDM 91 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~ 91 (203)
+.+-+++++||+|.+...
T Consensus 106 ~~~~kiviIDE~~~l~~~ 123 (367)
T PRK14970 106 TGKYKIYIIDEVHMLSSA 123 (367)
T ss_pred cCCcEEEEEeChhhcCHH
Confidence 467789999999988543
No 474
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=36.06 E-value=30 Score=26.00 Aligned_cols=45 Identities=20% Similarity=0.201 Sum_probs=30.9
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecC
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~ 118 (203)
+.+-+++++||.-.=+|......+..++..+......+++++.-.
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~ 194 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDL 194 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 456789999998777787777888777777644334555544433
No 475
>PLN02926 histidinol dehydrogenase
Probab=36.00 E-value=91 Score=26.85 Aligned_cols=27 Identities=11% Similarity=0.042 Sum_probs=23.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCC
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLP 27 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~ 27 (203)
+++.|+++.+|+.++.+++.+....++
T Consensus 268 ~aiLvT~s~~la~~V~~~v~~ql~~l~ 294 (431)
T PLN02926 268 QVVLVAVGDVDLDAIEEEVEKQCQSLP 294 (431)
T ss_pred cEEEEECCHHHHHHHHHHHHHHHHhCC
Confidence 478999999999999999988776653
No 476
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.97 E-value=60 Score=23.57 Aligned_cols=40 Identities=33% Similarity=0.324 Sum_probs=29.1
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEe
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~S 114 (203)
..+-+++++||--.=+|......+..++..+... ..++++
T Consensus 112 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~-~tii~~ 151 (171)
T cd03228 112 LRDPPILILDEATSALDPETEALILEALRALAKG-KTVIVI 151 (171)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCC-CEEEEE
Confidence 4677899999977777777788888888877544 344444
No 477
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=35.85 E-value=28 Score=26.10 Aligned_cols=44 Identities=16% Similarity=0.233 Sum_probs=30.5
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeec
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~ 117 (203)
..+-+++++||.-.=+|......+..++..+......+++++.-
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~ 185 (205)
T cd03226 142 LSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHD 185 (205)
T ss_pred HhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 45678999999877778777788888887764333445554433
No 478
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=35.75 E-value=41 Score=25.10 Aligned_cols=43 Identities=30% Similarity=0.302 Sum_probs=30.7
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeee
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 116 (203)
+.+-+++++||.-.=+|......+..++..+.....++++++.
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh 169 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIH 169 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 4677899999988777887788888888777543334444443
No 479
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.75 E-value=51 Score=28.99 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=13.4
Q ss_pred CCCccEEEEcchhHhh
Q 028826 74 FRNLVILVLDEADRLL 89 (203)
Q Consensus 74 l~~v~~lViDEad~l~ 89 (203)
..+-+++||||+|.+-
T Consensus 114 ~~~~kVVIIDEad~ls 129 (504)
T PRK14963 114 RGGRKVYILDEAHMMS 129 (504)
T ss_pred cCCCeEEEEECccccC
Confidence 4678899999999874
No 480
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=35.44 E-value=33 Score=26.43 Aligned_cols=44 Identities=14% Similarity=0.211 Sum_probs=31.3
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeec
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~ 117 (203)
+.+-+++++||.-.=+|......+..++..+.+....+++++.-
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 195 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHE 195 (240)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 45778999999888888887888888887774333444554443
No 481
>PRK12447 histidinol dehydrogenase; Reviewed
Probab=35.29 E-value=1.1e+02 Score=26.38 Aligned_cols=67 Identities=12% Similarity=0.272 Sum_probs=40.7
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
+++.++++.+|+.++..++.+....++. .+--...+.+.+.=|++.+.+.-..+.+. +-..++.+.
T Consensus 259 ~~iLvT~s~~la~~V~~~v~~ql~~l~r-----------~~i~~~sl~~~g~ii~v~~l~ea~~~~N~---~APEHLel~ 324 (426)
T PRK12447 259 PAVLITTSRKLAEEVLAEIERLLAILPT-----------ADVASAAWRDYGEVILCDDLEEMVAEADR---YASEHVQVM 324 (426)
T ss_pred ceEEEECCHHHHHHHHHHHHHHHHhCCH-----------HHHHHHHHHhCCEEEEECCHHHHHHHHHh---hChHheeeh
Confidence 4788999999999999999887766531 01112223233444566666666655543 445555544
Q ss_pred E
Q 028826 81 V 81 (203)
Q Consensus 81 V 81 (203)
+
T Consensus 325 ~ 325 (426)
T PRK12447 325 T 325 (426)
T ss_pred h
Confidence 3
No 482
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=35.25 E-value=2.9e+02 Score=23.74 Aligned_cols=172 Identities=10% Similarity=0.041 Sum_probs=86.8
Q ss_pred EEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcc-hHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCcc--CCCccEE
Q 028826 4 IISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVE-VKADVKKIEEEGANLLIGTPGRLYDIMERMDVLD--FRNLVIL 80 (203)
Q Consensus 4 il~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~-~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~--l~~v~~l 80 (203)
.++-|---|.|+...+++-++. +++.....+. .+.-...+.+.+.-+-+++-.-....+...-.++ +++.+ -
T Consensus 5 LI~GtGPvAiQLAv~lk~~~~~----~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~-~ 79 (429)
T PF10100_consen 5 LIVGTGPVAIQLAVILKKHGNC----RVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYE-E 79 (429)
T ss_pred EEEcCCHHHHHHHHHHHhccCc----eeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHH-H
Confidence 4555666788998888876532 3333332222 2233345544456666665544444443211111 11111 1
Q ss_pred EEcchhHhhhhchHHHHHHHHHhC-----CCCCcEEEEeeecChh--HHHHHHhcCCCCeEEEeccCcccccccchhhhh
Q 028826 81 VLDEADRLLDMGFQKQISYIISRL-----PKLRRTGLFSATQTEA--VEELSKAGLRNPVRIEVRAESKSHHASASSQQL 153 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~-----~~~~q~i~~SAT~~~~--v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~ 153 (203)
|.+|.|.++----.+.+..+++.+ ++-.++++.|.|+.++ ++.+++....+...|....-- .++.+.
T Consensus 80 i~g~WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFStY~------gdTr~~ 153 (429)
T PF10100_consen 80 IEGEWDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFSTYY------GDTRWS 153 (429)
T ss_pred hcccccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCCCceEEEeeccc------ccceec
Confidence 234444443111233344445544 4567999999999987 667777777777777765531 111221
Q ss_pred c----cCCCCCceeEEEEEcCC---CCcHHHHHHHHhcCC
Q 028826 154 A----SSKTPLGLHLEYLECES---DKKPSQLVDLLIKNK 186 (203)
Q Consensus 154 ~----~~~~~~~i~~~~~~~~~---~~k~~~l~~ll~~~~ 186 (203)
+ .+.....++...+.-.. ..-+..|..+++..+
T Consensus 154 d~~~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~g 193 (429)
T PF10100_consen 154 DGEQPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLG 193 (429)
T ss_pred cCCCcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcC
Confidence 1 12222334444333322 235677777777665
No 483
>PF05729 NACHT: NACHT domain
Probab=35.21 E-value=1.6e+02 Score=20.57 Aligned_cols=58 Identities=19% Similarity=0.316 Sum_probs=31.7
Q ss_pred EEEEcchhHhhhhc-------hHHHHHHHHHh-CCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEecc
Q 028826 79 ILVLDEADRLLDMG-------FQKQISYIISR-LPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRA 139 (203)
Q Consensus 79 ~lViDEad~l~~~~-------~~~~~~~il~~-~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~ 139 (203)
++|+|-+|.+.... ....+..++.. +++...+++.|.+-. ... ....+.....+.+..
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~--~~~-~~~~~~~~~~~~l~~ 149 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRA--FPD-LRRRLKQAQILELEP 149 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCCh--HHH-HHHhcCCCcEEEECC
Confidence 59999999987532 23445555655 445566666654332 223 333444444444433
No 484
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=35.12 E-value=31 Score=27.91 Aligned_cols=53 Identities=30% Similarity=0.325 Sum_probs=41.3
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCC-cEEEEeeecChhHHHHHH
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLR-RTGLFSATQTEAVEELSK 126 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~-q~i~~SAT~~~~v~~~~~ 126 (203)
+.+.+++++||--.=+|......+..+++.+...- .++++|.-...+++.+++
T Consensus 152 ~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d 205 (293)
T COG1131 152 LHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCD 205 (293)
T ss_pred hcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCC
Confidence 45678999999765567777888888888887666 588998888877777655
No 485
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=35.04 E-value=48 Score=29.52 Aligned_cols=43 Identities=16% Similarity=0.160 Sum_probs=24.2
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecC
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~ 118 (203)
..+-+++||||+|.|....+. .+...+...|....+|+ .+|-+
T Consensus 117 ~~~~kViIIDE~~~Lt~~a~n-aLLKtLEepp~~~ifIl-att~~ 159 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTGAFN-ALLKTLEEPPAHVIFIL-ATTEP 159 (559)
T ss_pred cCCeEEEEEECcccCCHHHHH-HHHHHhcCCCCCeEEEE-EeCCh
Confidence 456789999999988544333 33333444443333333 34433
No 486
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=35.00 E-value=1.4e+02 Score=24.67 Aligned_cols=55 Identities=16% Similarity=0.261 Sum_probs=33.1
Q ss_pred CcHHHHHHHHHHHHHhhhcCCCceEEEEEcCc-c-hHH-HHHHHHhCCCeEEEeccHHHH
Q 028826 7 PTRELSAQIYHVAQPFISTLPDVKSMLLVGGV-E-VKA-DVKKIEEEGANLLIGTPGRLY 63 (203)
Q Consensus 7 PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~-~-~~~-~~~~l~~~~~~ilV~Tp~~l~ 63 (203)
||+.|+. ++-..+.++..+.|++++.+ |+. . .-. ....+..-+.++.+++|..+.
T Consensus 136 PtQaL~D-l~Ti~e~~g~~l~gl~ia~v-GD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~ 193 (334)
T PRK01713 136 PTQMLAD-VLTMIENCDKPLSEISYVYI-GDARNNMGNSLLLIGAKLGMDVRICAPKALL 193 (334)
T ss_pred hHHHHHH-HHHHHHHcCCCcCCcEEEEE-CCCccCHHHHHHHHHHHcCCEEEEECCchhc
Confidence 8898885 44444555434557777655 553 2 122 222333468999999998763
No 487
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=34.90 E-value=34 Score=26.18 Aligned_cols=51 Identities=22% Similarity=0.096 Sum_probs=34.0
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHH
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEEL 124 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~ 124 (203)
+.+-+++++||--.=+|......+..++..+.....++++++.-...+..+
T Consensus 149 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~ 199 (232)
T cd03218 149 ATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSI 199 (232)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 457889999998877788778888888877754334555544433333333
No 488
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=34.81 E-value=82 Score=21.92 Aligned_cols=40 Identities=23% Similarity=0.105 Sum_probs=24.3
Q ss_pred CccEEEEcchhHhhhhchHHHHHHHHHhC-CCCCcEEEEeee
Q 028826 76 NLVILVLDEADRLLDMGFQKQISYIISRL-PKLRRTGLFSAT 116 (203)
Q Consensus 76 ~v~~lViDEad~l~~~~~~~~~~~il~~~-~~~~q~i~~SAT 116 (203)
.=.+++++|+|.+-.. ....+...+... ..+.++|+.|.+
T Consensus 69 ~~gtL~l~~i~~L~~~-~Q~~L~~~l~~~~~~~~RlI~ss~~ 109 (138)
T PF14532_consen 69 KGGTLYLKNIDRLSPE-AQRRLLDLLKRQERSNVRLIASSSQ 109 (138)
T ss_dssp TTSEEEEECGCCS-HH-HHHHHHHHHHHCTTTTSEEEEEECC
T ss_pred CCCEEEECChHHCCHH-HHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 3458999999988544 455566666655 344555544443
No 489
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=34.66 E-value=34 Score=26.43 Aligned_cols=45 Identities=24% Similarity=0.290 Sum_probs=31.7
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecC
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~ 118 (203)
..+-+++++||...=+|......+..++..+.....++++++.-+
T Consensus 157 ~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~ 201 (242)
T PRK11124 157 MMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEV 201 (242)
T ss_pred hcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 457889999998887887778888888877754334455544433
No 490
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=34.39 E-value=34 Score=26.15 Aligned_cols=44 Identities=23% Similarity=0.211 Sum_probs=31.6
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeec
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~ 117 (203)
+.+-+++++||--.-+|......+..++..+......+++++.-
T Consensus 129 ~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~ 172 (223)
T TIGR03771 129 ATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHD 172 (223)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 56788999999888788877888888887775434455554433
No 491
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=34.28 E-value=35 Score=25.71 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=28.8
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEee
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SA 115 (203)
..+-+++++||.-.=+|......+..++..+......+++++
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~s 192 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVT 192 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 456789999998777777777778777777644323444433
No 492
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=34.27 E-value=53 Score=21.25 Aligned_cols=29 Identities=24% Similarity=0.156 Sum_probs=19.0
Q ss_pred cCCCccEEEEcchhHhhhhchHHHHHHHH
Q 028826 73 DFRNLVILVLDEADRLLDMGFQKQISYII 101 (203)
Q Consensus 73 ~l~~v~~lViDEad~l~~~~~~~~~~~il 101 (203)
.-..++++++||+-.=+|......+..++
T Consensus 60 ~~~~~~~l~lDEaF~~lD~~~~~~~~~~l 88 (90)
T PF13558_consen 60 RGDSPRLLFLDEAFSKLDEENIERLMDLL 88 (90)
T ss_dssp S-TTBSEEEEESTTTTCGHHHHHHHHHHH
T ss_pred CCCCcCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 45679999999995545655555554444
No 493
>PF13245 AAA_19: Part of AAA domain
Probab=34.25 E-value=55 Score=20.48 Aligned_cols=18 Identities=17% Similarity=0.386 Sum_probs=15.9
Q ss_pred EEEEcCcHHHHHHHHHHH
Q 028826 2 GMIISPTRELSAQIYHVA 19 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~ 19 (203)
+++++||+..+.++.+.+
T Consensus 45 vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 45 VLVLAPTRAAADELRERL 62 (76)
T ss_pred EEEECCCHHHHHHHHHHH
Confidence 689999999999888777
No 494
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.06 E-value=80 Score=28.30 Aligned_cols=38 Identities=13% Similarity=0.127 Sum_probs=22.1
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEE
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGL 112 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~ 112 (203)
..+-+++||||+|.|-... ...+...+...+....+|+
T Consensus 118 ~~~~kVvIIDEa~~L~~~a-~naLLk~LEepp~~tv~Il 155 (585)
T PRK14950 118 LARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHAIFIL 155 (585)
T ss_pred cCCeEEEEEeChHhCCHHH-HHHHHHHHhcCCCCeEEEE
Confidence 4677899999999885433 2233334444443433333
No 495
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=33.85 E-value=1.4e+02 Score=21.81 Aligned_cols=13 Identities=15% Similarity=0.273 Sum_probs=6.0
Q ss_pred cCCCceEEEEEcC
Q 028826 25 TLPDVKSMLLVGG 37 (203)
Q Consensus 25 ~~~~i~~~~~~~g 37 (203)
.+|+++++....|
T Consensus 71 ~yP~l~ivg~~~g 83 (172)
T PF03808_consen 71 RYPGLRIVGYHHG 83 (172)
T ss_pred HCCCeEEEEecCC
Confidence 3445555544444
No 496
>PRK12358 putative 6-phosphogluconolactonase; Provisional
Probab=33.79 E-value=1.6e+02 Score=22.84 Aligned_cols=65 Identities=17% Similarity=0.213 Sum_probs=35.5
Q ss_pred EEEcCc-HHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 3 MIISPT-RELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 3 lil~Pt-reLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
+++.++ .|++..+.+.+.+....- +.-...+.||.+...-.+.|.+ ... ...+.+++.++-
T Consensus 3 i~i~~~~~e~~~~~a~~i~~~i~~~-~~~~l~lsgG~tp~~~y~~L~~---------------~~~--~~~~w~~v~~f~ 64 (239)
T PRK12358 3 IIITKDYEEMSRVAAHHLLGYMSKT-KRVNLAITAGSTPKGMYEYLIT---------------LVK--GKAWYDNVHYYN 64 (239)
T ss_pred EEEECCHHHHHHHHHHHHHHHHHhC-CCeEEEECCCCCHHHHHHHHHH---------------HHh--cCCCHHHcEEEe
Confidence 566666 445555555555554442 3345566666554444433321 111 233478899999
Q ss_pred Ecch
Q 028826 82 LDEA 85 (203)
Q Consensus 82 iDEa 85 (203)
+||+
T Consensus 65 ~DEv 68 (239)
T PRK12358 65 FDEI 68 (239)
T ss_pred cccc
Confidence 9994
No 497
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=33.73 E-value=55 Score=27.73 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=27.6
Q ss_pred cEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEee
Q 028826 78 VILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (203)
Q Consensus 78 ~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SA 115 (203)
+++|||||-.| -...++.|+.+......+++.+-
T Consensus 353 ~FiIIDEaQNL----TpheikTiltR~G~GsKIVl~gd 386 (436)
T COG1875 353 SFIIIDEAQNL----TPHELKTILTRAGEGSKIVLTGD 386 (436)
T ss_pred ceEEEehhhcc----CHHHHHHHHHhccCCCEEEEcCC
Confidence 58999999866 46688999999988888877653
No 498
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=33.61 E-value=42 Score=24.47 Aligned_cols=40 Identities=25% Similarity=0.313 Sum_probs=29.8
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEE
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLF 113 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~ 113 (203)
..+-+++++||.-.-+|......+..++..+......+++
T Consensus 111 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii 150 (173)
T cd03230 111 LHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILL 150 (173)
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 4577899999988888888888888888877544334444
No 499
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=33.55 E-value=94 Score=24.15 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=18.2
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCC
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLP 105 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~ 105 (203)
...+++|+| || ||...++.+++...
T Consensus 177 ~gadlIvLD---Cm---GYt~~~r~~~~~~~ 201 (221)
T PF07302_consen 177 QGADLIVLD---CM---GYTQEMRDIVQRAL 201 (221)
T ss_pred cCCCEEEEE---CC---CCCHHHHHHHHHHh
Confidence 367788864 54 88888888887764
No 500
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=33.47 E-value=41 Score=25.48 Aligned_cols=43 Identities=19% Similarity=0.153 Sum_probs=28.8
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeee
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 116 (203)
+.+-+++++||.-.=+|......+..++..+.+....+++++-
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH 195 (214)
T PRK13543 153 LSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195 (214)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 4577899999977667777777777777665443345555443
Done!