Query 028826
Match_columns 203
No_of_seqs 133 out of 1342
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 04:27:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028826.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028826hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 7.4E-32 2.5E-36 226.8 19.5 182 1-201 131-314 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 3.3E-29 1.1E-33 208.6 19.9 183 2-202 104-291 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 2.7E-29 9.2E-34 208.9 17.5 183 1-201 107-290 (410)
4 1xti_A Probable ATP-dependent 100.0 3.6E-28 1.2E-32 200.5 20.0 185 2-201 79-264 (391)
5 3eiq_A Eukaryotic initiation f 100.0 2.3E-28 7.9E-33 203.1 18.9 184 1-201 110-294 (414)
6 3fe2_A Probable ATP-dependent 100.0 6.6E-28 2.2E-32 187.8 17.0 137 1-140 104-240 (242)
7 1fuu_A Yeast initiation factor 100.0 2.9E-27 1E-31 195.1 16.9 183 1-202 91-274 (394)
8 1s2m_A Putative ATP-dependent 100.0 5.8E-27 2E-31 194.1 18.1 182 1-201 91-272 (400)
9 3fmp_B ATP-dependent RNA helic 99.9 9.6E-28 3.3E-32 203.7 13.3 183 1-202 164-348 (479)
10 1wrb_A DJVLGB; RNA helicase, D 99.9 6.3E-27 2.2E-31 183.3 16.8 137 1-140 102-242 (253)
11 3fmo_B ATP-dependent RNA helic 99.9 2.1E-27 7E-32 190.8 13.7 135 1-139 164-299 (300)
12 3iuy_A Probable ATP-dependent 99.9 1.3E-26 4.6E-31 178.7 15.8 132 2-137 97-228 (228)
13 3fht_A ATP-dependent RNA helic 99.9 5.6E-27 1.9E-31 194.5 14.3 182 1-201 97-280 (412)
14 3ber_A Probable ATP-dependent 99.9 4.8E-26 1.6E-30 178.2 17.4 136 1-138 113-248 (249)
15 3bor_A Human initiation factor 99.9 2.1E-26 7.1E-31 178.9 15.0 137 1-139 100-236 (237)
16 2oxc_A Probable ATP-dependent 99.9 4E-26 1.4E-30 176.4 15.6 135 1-138 94-229 (230)
17 1t6n_A Probable ATP-dependent 99.9 9.2E-26 3.2E-30 173.0 16.9 136 1-137 84-220 (220)
18 3sqw_A ATP-dependent RNA helic 99.9 4.2E-26 1.4E-30 198.0 16.1 190 1-201 97-302 (579)
19 1hv8_A Putative ATP-dependent 99.9 1.3E-25 4.5E-30 183.3 18.0 176 2-201 77-252 (367)
20 1vec_A ATP-dependent RNA helic 99.9 1.4E-25 4.6E-30 170.2 16.8 133 1-135 73-205 (206)
21 3ly5_A ATP-dependent RNA helic 99.9 1.1E-25 3.7E-30 177.5 16.4 131 1-133 128-258 (262)
22 2pl3_A Probable ATP-dependent 99.9 1.8E-25 6.1E-30 173.2 17.4 136 1-139 99-234 (236)
23 1q0u_A Bstdead; DEAD protein, 99.9 4.6E-26 1.6E-30 174.7 13.7 138 1-140 74-214 (219)
24 2z0m_A 337AA long hypothetical 99.9 4E-25 1.4E-29 178.6 19.5 177 1-201 58-234 (337)
25 3i5x_A ATP-dependent RNA helic 99.9 1.4E-25 4.9E-30 193.8 16.9 190 1-201 148-353 (563)
26 3pey_A ATP-dependent RNA helic 99.9 2E-25 6.8E-30 183.9 16.1 179 1-201 77-257 (395)
27 2gxq_A Heat resistant RNA depe 99.9 8.9E-25 3E-29 165.7 16.1 133 1-138 74-206 (207)
28 1qde_A EIF4A, translation init 99.9 7.1E-25 2.4E-29 168.4 14.3 136 1-140 84-219 (224)
29 3dkp_A Probable ATP-dependent 99.9 8.2E-25 2.8E-29 170.4 11.5 139 1-140 100-243 (245)
30 3oiy_A Reverse gyrase helicase 99.9 4.3E-25 1.5E-29 184.1 10.3 174 1-202 66-267 (414)
31 3fho_A ATP-dependent RNA helic 99.9 3.7E-24 1.3E-28 183.2 16.1 180 1-202 191-372 (508)
32 4ddu_A Reverse gyrase; topoiso 99.9 3.6E-24 1.2E-28 196.7 12.3 174 1-202 123-324 (1104)
33 3l9o_A ATP-dependent RNA helic 99.9 8.1E-23 2.8E-27 187.8 14.9 125 2-140 230-356 (1108)
34 1gku_B Reverse gyrase, TOP-RG; 99.9 8.4E-24 2.9E-28 194.0 4.0 173 1-202 101-290 (1054)
35 2fsf_A Preprotein translocase 99.9 7.5E-23 2.6E-27 180.3 8.4 101 1-106 117-240 (853)
36 1tf5_A Preprotein translocase 99.9 3.5E-23 1.2E-27 182.6 5.9 115 1-119 126-288 (844)
37 2v1x_A ATP-dependent DNA helic 99.9 1.3E-21 4.4E-26 170.0 13.8 180 2-202 87-282 (591)
38 2xgj_A ATP-dependent RNA helic 99.9 3.3E-21 1.1E-25 175.8 16.9 124 2-139 132-257 (1010)
39 1oyw_A RECQ helicase, ATP-depe 99.8 8.5E-21 2.9E-25 162.8 13.5 174 2-202 68-251 (523)
40 4a4z_A Antiviral helicase SKI2 99.8 6E-21 2E-25 174.1 13.0 113 2-127 85-197 (997)
41 1nkt_A Preprotein translocase 99.8 1.1E-21 3.7E-26 173.4 7.8 115 1-119 154-316 (922)
42 4a2p_A RIG-I, retinoic acid in 99.8 2.8E-20 9.7E-25 159.7 12.1 116 1-119 57-178 (556)
43 2zj8_A DNA helicase, putative 99.8 1.2E-19 4.2E-24 161.0 14.6 171 2-202 71-252 (720)
44 3tbk_A RIG-I helicase domain; 99.8 8E-20 2.7E-24 156.6 13.0 116 1-119 54-176 (555)
45 2p6r_A Afuhel308 helicase; pro 99.8 2.5E-19 8.6E-24 158.6 14.8 172 1-202 70-257 (702)
46 4f92_B U5 small nuclear ribonu 99.8 1E-19 3.5E-24 172.9 12.5 177 2-202 137-332 (1724)
47 2va8_A SSO2462, SKI2-type heli 99.8 2.5E-19 8.7E-24 158.8 13.5 118 2-128 78-195 (715)
48 2ykg_A Probable ATP-dependent 99.8 2.8E-20 9.5E-25 164.3 6.9 114 2-118 64-184 (696)
49 4f92_B U5 small nuclear ribonu 99.8 4.7E-19 1.6E-23 168.3 14.4 177 2-201 975-1169(1724)
50 4a2q_A RIG-I, retinoic acid in 99.8 3.5E-19 1.2E-23 159.7 12.7 115 1-118 298-418 (797)
51 1wp9_A ATP-dependent RNA helic 99.8 2E-18 6.8E-23 144.9 14.9 115 2-120 55-169 (494)
52 4a2w_A RIG-I, retinoic acid in 99.8 2.6E-18 9E-23 156.2 11.8 114 2-118 299-418 (936)
53 2eyq_A TRCF, transcription-rep 99.8 8.2E-18 2.8E-22 155.4 14.4 170 1-202 654-827 (1151)
54 3o8b_A HCV NS3 protease/helica 99.7 6.7E-18 2.3E-22 147.2 11.0 103 1-120 259-363 (666)
55 1gm5_A RECG; helicase, replica 99.7 1.1E-16 3.8E-21 142.4 11.4 168 1-200 419-591 (780)
56 4gl2_A Interferon-induced heli 99.7 2.8E-18 9.5E-23 151.6 0.9 114 2-119 59-193 (699)
57 3llm_A ATP-dependent RNA helic 99.7 6.1E-16 2.1E-20 119.6 12.1 119 2-133 112-232 (235)
58 3b6e_A Interferon-induced heli 99.7 1.1E-16 3.8E-21 121.4 6.9 113 1-116 84-216 (216)
59 2fwr_A DNA repair protein RAD2 99.6 5.4E-17 1.8E-21 137.3 2.8 94 1-118 135-229 (472)
60 2xau_A PRE-mRNA-splicing facto 99.6 1.1E-14 3.8E-19 129.9 14.3 170 2-202 143-318 (773)
61 1yks_A Genome polyprotein [con 99.6 8.6E-17 2.9E-21 135.3 -0.5 99 1-123 39-146 (440)
62 2oca_A DAR protein, ATP-depend 99.6 1.5E-15 5.3E-20 129.5 6.4 107 2-121 160-266 (510)
63 2whx_A Serine protease/ntpase/ 99.6 4.5E-16 1.5E-20 135.8 3.1 107 1-123 217-324 (618)
64 1rif_A DAR protein, DNA helica 99.6 2.6E-15 9E-20 119.0 5.8 108 2-122 160-267 (282)
65 2jlq_A Serine protease subunit 99.6 2.5E-15 8.6E-20 126.7 5.7 106 1-122 50-156 (451)
66 2v6i_A RNA helicase; membrane, 99.5 3.5E-14 1.2E-18 119.1 8.9 104 1-120 33-137 (431)
67 2wv9_A Flavivirin protease NS2 99.5 1.2E-15 4E-20 134.2 -0.4 99 1-122 272-378 (673)
68 3h1t_A Type I site-specific re 99.5 2E-14 6.9E-19 124.8 6.9 103 2-120 238-344 (590)
69 2z83_A Helicase/nucleoside tri 99.5 1.5E-14 5.2E-19 122.2 4.7 102 1-122 52-158 (459)
70 2ipc_A Preprotein translocase 99.4 3.7E-13 1.3E-17 119.4 10.0 101 1-106 122-248 (997)
71 2w00_A HSDR, R.ECOR124I; ATP-b 99.4 4.7E-14 1.6E-18 128.8 3.6 107 2-119 333-440 (1038)
72 3rc3_A ATP-dependent RNA helic 99.3 4.7E-13 1.6E-17 117.6 3.8 109 2-128 182-291 (677)
73 2fz4_A DNA repair protein RAD2 99.3 1.3E-11 4.3E-16 95.5 9.4 96 1-120 135-231 (237)
74 3jux_A Protein translocase sub 99.1 6.9E-10 2.4E-14 97.1 12.4 85 1-89 118-258 (822)
75 1z63_A Helicase of the SNF2/RA 99.1 6.2E-11 2.1E-15 100.7 4.1 101 2-119 89-189 (500)
76 3dmq_A RNA polymerase-associat 99.0 8.5E-11 2.9E-15 107.4 1.7 112 2-118 203-317 (968)
77 3mwy_W Chromo domain-containin 98.8 2.2E-08 7.5E-13 89.9 11.2 106 2-117 289-405 (800)
78 3crv_A XPD/RAD3 related DNA he 98.7 1.4E-08 4.9E-13 87.4 7.0 87 2-90 50-187 (551)
79 1z3i_X Similar to RAD54-like; 98.6 4.1E-07 1.4E-11 79.8 11.2 109 2-119 117-232 (644)
80 2d7d_A Uvrabc system protein B 98.3 5.4E-07 1.9E-11 79.2 6.0 131 35-202 304-460 (661)
81 2vl7_A XPD; helicase, unknown 98.1 2.2E-06 7.4E-11 73.7 5.5 82 2-89 54-188 (540)
82 1c4o_A DNA nucleotide excision 98.1 4.8E-06 1.6E-10 73.2 7.2 115 57-202 314-454 (664)
83 2p6n_A ATP-dependent RNA helic 97.9 5.2E-06 1.8E-10 61.7 2.2 60 126-201 9-68 (191)
84 2jgn_A DBX, DDX3, ATP-dependen 97.3 0.00012 4.1E-09 53.9 3.0 46 156-201 14-60 (185)
85 1w36_D RECD, exodeoxyribonucle 97.1 0.00066 2.2E-08 59.1 6.0 99 2-116 199-298 (608)
86 2hjv_A ATP-dependent RNA helic 96.8 0.011 3.7E-07 42.1 9.2 71 2-84 38-111 (163)
87 2p6n_A ATP-dependent RNA helic 96.6 0.019 6.6E-07 42.1 9.9 69 2-82 57-128 (191)
88 1fuk_A Eukaryotic initiation f 96.5 0.022 7.4E-07 40.6 9.0 72 1-84 32-106 (165)
89 1t5i_A C_terminal domain of A 96.2 0.021 7.1E-07 41.1 7.5 72 1-84 33-107 (172)
90 3eaq_A Heat resistant RNA depe 96.1 0.044 1.5E-06 40.8 9.2 69 2-82 34-105 (212)
91 2rb4_A ATP-dependent RNA helic 96.0 0.034 1.1E-06 40.0 8.2 69 2-82 37-108 (175)
92 2jgn_A DBX, DDX3, ATP-dependen 95.9 0.026 8.9E-07 41.2 6.9 69 2-82 49-120 (185)
93 2db3_A ATP-dependent RNA helic 95.4 0.085 2.9E-06 43.6 9.1 69 2-82 303-374 (434)
94 2i4i_A ATP-dependent RNA helic 95.3 0.11 3.7E-06 42.2 9.5 69 2-82 279-350 (417)
95 1hv8_A Putative ATP-dependent 95.1 0.1 3.5E-06 41.4 8.5 71 2-84 241-314 (367)
96 3i5x_A ATP-dependent RNA helic 95.0 0.14 4.7E-06 43.6 9.6 74 2-84 342-418 (563)
97 3i32_A Heat resistant RNA depe 95.0 0.12 4.1E-06 40.8 8.5 69 2-82 31-102 (300)
98 3sqw_A ATP-dependent RNA helic 94.9 0.15 5.2E-06 43.7 9.6 75 2-85 291-368 (579)
99 2d7d_A Uvrabc system protein B 94.6 0.33 1.1E-05 42.5 11.0 75 2-88 448-525 (661)
100 1c4o_A DNA nucleotide excision 94.5 0.51 1.7E-05 41.4 12.0 75 2-88 442-519 (664)
101 1oyw_A RECQ helicase, ATP-depe 94.5 0.15 5.1E-06 43.4 8.4 69 2-82 239-310 (523)
102 2j0s_A ATP-dependent RNA helic 94.4 0.17 5.9E-06 41.0 8.4 69 2-82 279-350 (410)
103 3fht_A ATP-dependent RNA helic 94.4 0.2 6.8E-06 40.5 8.8 69 2-82 269-340 (412)
104 3pey_A ATP-dependent RNA helic 94.4 0.74 2.5E-05 36.7 12.1 73 2-86 246-321 (395)
105 1s2m_A Putative ATP-dependent 94.1 0.22 7.6E-06 40.1 8.4 70 2-83 261-333 (400)
106 1xti_A Probable ATP-dependent 93.8 0.29 9.8E-06 39.2 8.5 72 2-85 253-327 (391)
107 2v1x_A ATP-dependent DNA helic 93.7 0.27 9.4E-06 42.5 8.6 69 2-82 270-341 (591)
108 2yjt_D ATP-dependent RNA helic 92.7 0.013 4.4E-07 42.1 0.0 71 2-84 33-106 (170)
109 2eyq_A TRCF, transcription-rep 93.5 0.13 4.6E-06 48.0 6.7 77 1-87 814-893 (1151)
110 2v6i_A RNA helicase; membrane, 92.9 0.21 7.3E-06 41.3 6.5 66 1-80 173-238 (431)
111 1wp9_A ATP-dependent RNA helic 92.8 0.32 1.1E-05 39.8 7.5 72 2-85 364-446 (494)
112 2xau_A PRE-mRNA-splicing facto 92.4 0.29 1E-05 43.7 7.0 74 2-82 306-393 (773)
113 1yks_A Genome polyprotein [con 92.3 0.16 5.5E-06 42.2 4.9 67 1-81 179-245 (440)
114 2oca_A DAR protein, ATP-depend 92.2 0.55 1.9E-05 39.3 8.2 73 3-86 351-426 (510)
115 3rc3_A ATP-dependent RNA helic 91.8 0.64 2.2E-05 40.9 8.4 74 2-88 323-401 (677)
116 3eiq_A Eukaryotic initiation f 91.1 0.21 7.3E-06 40.4 4.4 69 2-82 283-354 (414)
117 2whx_A Serine protease/ntpase/ 90.8 0.88 3E-05 39.5 8.1 66 2-81 358-423 (618)
118 3oiy_A Reverse gyrase helicase 90.8 0.31 1E-05 39.7 5.0 69 1-84 254-328 (414)
119 2wv9_A Flavivirin protease NS2 90.7 0.65 2.2E-05 40.8 7.3 67 1-81 412-478 (673)
120 3o8b_A HCV NS3 protease/helica 89.7 0.51 1.8E-05 41.4 5.7 63 2-81 399-461 (666)
121 2z0m_A 337AA long hypothetical 89.6 1 3.4E-05 35.1 7.0 67 2-84 223-292 (337)
122 4a15_A XPD helicase, ATP-depen 89.0 0.26 8.9E-06 42.9 3.3 36 2-38 54-89 (620)
123 3fmp_B ATP-dependent RNA helic 88.6 0.084 2.9E-06 44.1 0.0 69 2-82 336-407 (479)
124 2jlq_A Serine protease subunit 88.5 0.6 2E-05 38.8 5.2 66 2-81 191-256 (451)
125 3vkw_A Replicase large subunit 88.1 1.4 4.7E-05 36.8 7.0 66 2-95 187-252 (446)
126 3tbk_A RIG-I helicase domain; 86.3 1.4 4.8E-05 36.9 6.3 73 2-82 392-476 (555)
127 4gl2_A Interferon-induced heli 86.3 0.42 1.4E-05 41.7 3.1 74 2-82 403-488 (699)
128 4ddu_A Reverse gyrase; topoiso 86.0 1.1 3.8E-05 41.6 5.8 76 1-87 311-388 (1104)
129 3dmq_A RNA polymerase-associat 85.9 1.1 3.7E-05 41.1 5.7 74 2-86 506-584 (968)
130 1gku_B Reverse gyrase, TOP-RG; 84.5 1.2 4.1E-05 41.2 5.3 72 1-86 277-352 (1054)
131 2gno_A DNA polymerase III, gam 82.9 15 0.00051 28.6 11.0 89 29-119 18-123 (305)
132 1fuu_A Yeast initiation factor 82.9 0.24 8.3E-06 39.7 0.0 69 2-82 262-333 (394)
133 3fho_A ATP-dependent RNA helic 82.7 0.31 1E-05 41.2 0.5 70 1-82 359-431 (508)
134 2w00_A HSDR, R.ECOR124I; ATP-b 82.7 6.5 0.00022 36.3 9.3 36 2-37 540-582 (1038)
135 2ykg_A Probable ATP-dependent 82.2 0.66 2.2E-05 40.5 2.5 76 2-85 401-488 (696)
136 3bos_A Putative DNA replicatio 82.1 7.8 0.00027 28.2 8.2 99 17-117 41-147 (242)
137 2z83_A Helicase/nucleoside tri 81.8 0.77 2.6E-05 38.2 2.7 67 1-81 192-258 (459)
138 2zj8_A DNA helicase, putative 81.6 5.2 0.00018 35.1 8.0 74 1-81 239-343 (720)
139 2va8_A SSO2462, SKI2-type heli 80.6 6.7 0.00023 34.3 8.4 75 1-82 254-362 (715)
140 3u61_B DNA polymerase accessor 79.6 9.1 0.00031 29.7 8.2 41 75-115 104-144 (324)
141 3kta_B Chromosome segregation 78.6 1.7 5.9E-05 31.1 3.3 41 75-115 85-125 (173)
142 1sxj_E Activator 1 40 kDa subu 78.0 2.1 7.3E-05 33.7 4.1 42 75-117 133-174 (354)
143 4a2w_A RIG-I, retinoic acid in 78.0 2 6.9E-05 39.2 4.3 75 2-84 634-720 (936)
144 4a2p_A RIG-I, retinoic acid in 77.6 2.3 7.8E-05 35.6 4.3 75 2-84 393-479 (556)
145 2kjq_A DNAA-related protein; s 76.8 0.79 2.7E-05 31.9 1.0 44 74-118 81-125 (149)
146 1g5t_A COB(I)alamin adenosyltr 76.7 4.1 0.00014 29.9 4.9 53 75-127 119-173 (196)
147 2p6r_A Afuhel308 helicase; pro 76.5 5.3 0.00018 34.9 6.5 75 1-82 244-346 (702)
148 3h1t_A Type I site-specific re 76.4 9 0.00031 32.6 7.8 77 2-85 442-526 (590)
149 1z5z_A Helicase of the SNF2/RA 74.8 10 0.00036 29.0 7.1 72 2-84 115-191 (271)
150 2gk6_A Regulator of nonsense t 74.1 18 0.0006 31.3 9.0 21 2-22 227-247 (624)
151 4a2q_A RIG-I, retinoic acid in 73.6 3.7 0.00013 36.6 4.8 75 2-84 634-720 (797)
152 3lhi_A Putative 6-phosphogluco 73.4 9 0.00031 28.7 6.2 26 58-84 45-70 (232)
153 2chg_A Replication factor C sm 73.2 8.1 0.00028 27.5 5.9 40 75-115 101-140 (226)
154 3euj_A Chromosome partition pr 72.7 4 0.00014 34.3 4.5 37 75-114 413-449 (483)
155 1z5z_A Helicase of the SNF2/RA 72.6 0.89 3.1E-05 35.1 0.5 31 170-200 93-125 (271)
156 2o0j_A Terminase, DNA packagin 71.8 38 0.0013 27.4 10.9 26 2-27 211-236 (385)
157 1gm5_A RECG; helicase, replica 71.8 0.36 1.2E-05 43.2 -2.2 79 2-87 581-668 (780)
158 3nwp_A 6-phosphogluconolactona 70.6 12 0.00041 28.0 6.4 27 58-85 48-74 (233)
159 2wjy_A Regulator of nonsense t 70.3 21 0.00073 31.9 8.8 54 51-115 495-548 (800)
160 3lwd_A 6-phosphogluconolactona 68.5 11 0.00038 28.1 5.7 27 58-85 44-70 (226)
161 2q5c_A NTRC family transcripti 68.2 22 0.00076 25.7 7.2 59 3-68 8-67 (196)
162 3hjh_A Transcription-repair-co 67.4 11 0.00036 31.7 6.0 59 2-64 42-115 (483)
163 1njg_A DNA polymerase III subu 65.6 6.2 0.00021 28.5 3.9 39 75-114 125-163 (250)
164 1l8q_A Chromosomal replication 65.2 5.4 0.00018 31.1 3.6 89 29-118 37-141 (324)
165 1d2n_A N-ethylmaleimide-sensit 64.9 17 0.00058 27.3 6.4 46 75-120 123-178 (272)
166 3h4m_A Proteasome-activating n 64.8 10 0.00034 28.8 5.0 13 77-89 111-123 (285)
167 2xzl_A ATP-dependent helicase 64.7 53 0.0018 29.4 10.2 21 2-22 407-427 (802)
168 2orw_A Thymidine kinase; TMTK, 64.5 17 0.00059 25.8 6.0 39 76-118 76-114 (184)
169 3syl_A Protein CBBX; photosynt 63.7 7.7 0.00026 29.8 4.2 12 78-89 132-143 (309)
170 1iqp_A RFCS; clamp loader, ext 63.6 17 0.00058 27.8 6.2 39 75-114 109-147 (327)
171 2z4s_A Chromosomal replication 62.7 7.8 0.00027 32.0 4.3 88 29-116 130-236 (440)
172 2qby_B CDC6 homolog 3, cell di 62.5 54 0.0018 25.6 10.9 36 79-115 136-172 (384)
173 3ec2_A DNA replication protein 61.9 3.6 0.00012 29.0 1.8 105 15-119 22-144 (180)
174 4a15_A XPD helicase, ATP-depen 61.5 3 0.0001 36.2 1.5 40 50-90 174-218 (620)
175 2p65_A Hypothetical protein PF 60.6 2.3 7.8E-05 29.7 0.6 14 76-89 115-128 (187)
176 1sxj_C Activator 1 40 kDa subu 60.3 19 0.00063 28.2 6.0 39 75-114 109-147 (340)
177 4a4z_A Antiviral helicase SKI2 59.8 28 0.00095 32.0 7.7 75 2-85 339-451 (997)
178 1sxj_D Activator 1 41 kDa subu 59.6 11 0.00039 29.3 4.6 39 75-114 132-170 (353)
179 3n70_A Transport activator; si 59.5 10 0.00036 25.6 3.9 36 78-114 78-113 (145)
180 3co5_A Putative two-component 59.4 37 0.0013 22.7 7.6 101 11-116 12-115 (143)
181 2r2a_A Uncharacterized protein 58.0 6.5 0.00022 28.7 2.7 39 77-116 88-132 (199)
182 3jux_A Protein translocase sub 57.9 17 0.00057 32.6 5.5 53 2-59 477-530 (822)
183 1z63_A Helicase of the SNF2/RA 57.5 26 0.00089 28.9 6.7 73 2-85 344-421 (500)
184 2v1u_A Cell division control p 56.7 17 0.00057 28.6 5.2 28 77-104 131-159 (387)
185 8tfv_A Protein (thanatin); bac 56.3 2.8 9.4E-05 18.2 0.2 9 190-198 7-15 (21)
186 1y89_A DEVB protein; structura 56.0 25 0.00084 26.3 5.7 176 3-196 4-231 (238)
187 3e1s_A Exodeoxyribonuclease V, 55.9 14 0.00047 31.7 4.7 38 75-116 278-315 (574)
188 3auy_A DNA double-strand break 55.7 14 0.00047 29.6 4.5 41 75-115 303-344 (371)
189 1tf5_A Preprotein translocase 55.6 18 0.00062 32.6 5.5 53 2-59 435-488 (844)
190 1jr3_A DNA polymerase III subu 54.7 11 0.00038 29.6 3.8 39 75-114 118-156 (373)
191 1a5t_A Delta prime, HOLB; zinc 54.1 13 0.00043 29.3 4.0 61 52-113 74-144 (334)
192 1w4r_A Thymidine kinase; type 54.0 60 0.0021 23.6 7.3 37 75-116 90-126 (195)
193 2b8t_A Thymidine kinase; deoxy 53.7 46 0.0016 24.6 6.8 57 53-115 68-124 (223)
194 3l9o_A ATP-dependent RNA helic 53.6 16 0.00054 34.1 5.0 73 2-81 444-553 (1108)
195 4aby_A DNA repair protein RECN 53.4 10 0.00035 30.6 3.4 39 78-116 317-355 (415)
196 2fwr_A DNA repair protein RAD2 52.6 3 0.0001 34.4 0.1 66 2-84 352-420 (472)
197 1sxj_B Activator 1 37 kDa subu 52.3 9.8 0.00033 29.2 3.0 38 76-114 107-144 (323)
198 3te6_A Regulatory protein SIR3 52.2 21 0.00072 28.1 4.9 41 75-118 131-174 (318)
199 2qgz_A Helicase loader, putati 52.2 49 0.0017 25.6 7.1 60 29-88 152-226 (308)
200 2ri0_A Glucosamine-6-phosphate 51.8 62 0.0021 23.7 7.4 36 163-198 184-230 (234)
201 3e2i_A Thymidine kinase; Zn-bi 50.7 44 0.0015 24.8 6.2 36 75-114 100-135 (219)
202 3cpe_A Terminase, DNA packagin 50.1 1.2E+02 0.0041 25.8 10.2 95 2-114 211-311 (592)
203 3hn6_A Glucosamine-6-phosphate 50.1 81 0.0028 24.3 7.9 36 163-198 218-264 (289)
204 3s99_A Basic membrane lipoprot 50.0 43 0.0015 26.7 6.5 112 15-128 46-170 (356)
205 2i3b_A HCR-ntpase, human cance 50.0 8.5 0.00029 27.8 2.2 42 74-118 103-146 (189)
206 1jbk_A CLPB protein; beta barr 49.8 22 0.00077 24.3 4.4 14 76-89 115-128 (195)
207 2xgj_A ATP-dependent RNA helic 49.3 36 0.0012 31.3 6.6 75 2-84 346-457 (1010)
208 3eb9_A 6-phosphogluconolactona 48.5 26 0.00088 26.8 4.8 34 163-196 212-257 (266)
209 2qen_A Walker-type ATPase; unk 46.8 22 0.00076 27.4 4.4 37 77-114 129-171 (350)
210 2qby_A CDC6 homolog 1, cell di 46.8 13 0.00043 29.2 2.9 15 77-91 129-143 (386)
211 2w58_A DNAI, primosome compone 45.8 75 0.0026 22.3 8.3 14 75-88 114-127 (202)
212 1z3i_X Similar to RAD54-like; 45.0 99 0.0034 26.6 8.5 71 2-84 419-495 (644)
213 4ag6_A VIRB4 ATPase, type IV s 44.8 20 0.0007 28.7 3.9 32 75-106 261-295 (392)
214 3oc6_A 6-phosphogluconolactona 44.3 38 0.0013 25.5 5.2 129 70-199 63-245 (248)
215 3upu_A ATP-dependent DNA helic 43.9 32 0.0011 28.2 5.1 37 74-114 126-162 (459)
216 3tx2_A Probable 6-phosphogluco 43.7 39 0.0013 25.5 5.1 129 70-199 63-247 (251)
217 1e69_A Chromosome segregation 43.3 18 0.0006 28.3 3.2 42 75-116 240-281 (322)
218 1vl1_A 6PGL, 6-phosphogluconol 43.2 44 0.0015 24.9 5.3 125 58-184 56-212 (232)
219 3hu3_A Transitional endoplasmi 43.0 39 0.0013 28.2 5.5 43 77-119 298-350 (489)
220 3eie_A Vacuolar protein sortin 42.8 36 0.0012 26.4 5.0 15 76-90 110-124 (322)
221 3ico_A 6PGL, 6-phosphogluconol 41.8 36 0.0012 26.0 4.7 126 70-196 79-260 (268)
222 1w5s_A Origin recognition comp 41.5 42 0.0014 26.6 5.3 14 77-90 139-152 (412)
223 3cf0_A Transitional endoplasmi 40.4 40 0.0014 25.8 4.9 42 77-118 109-163 (301)
224 2chq_A Replication factor C sm 39.9 18 0.00062 27.6 2.8 16 75-90 101-116 (319)
225 1fnn_A CDC6P, cell division co 39.6 12 0.00042 29.5 1.8 25 77-102 126-150 (389)
226 3css_A 6-phosphogluconolactona 38.9 64 0.0022 24.5 5.7 92 3-113 8-107 (267)
227 1w1w_A Structural maintenance 38.5 24 0.00081 28.8 3.4 41 75-115 354-395 (430)
228 2fsf_A Preprotein translocase 37.4 58 0.002 29.4 5.8 53 2-59 444-497 (853)
229 2ipc_A Preprotein translocase 37.3 29 0.001 31.8 3.9 76 109-201 380-457 (997)
230 1jr3_D DNA polymerase III, del 36.1 30 0.001 27.0 3.5 65 74-139 74-141 (343)
231 4b3f_X DNA-binding protein smu 35.5 35 0.0012 29.5 4.1 21 2-22 236-256 (646)
232 1nkt_A Preprotein translocase 35.5 80 0.0028 28.8 6.4 53 2-59 463-516 (922)
233 3b9p_A CG5977-PA, isoform A; A 35.3 58 0.002 24.5 5.1 15 76-90 113-127 (297)
234 2fna_A Conserved hypothetical 34.8 44 0.0015 25.7 4.3 38 77-115 138-178 (357)
235 3mwy_W Chromo domain-containin 34.4 1.3E+02 0.0043 26.7 7.7 113 2-130 575-699 (800)
236 2qz4_A Paraplegin; AAA+, SPG7, 34.1 61 0.0021 23.7 4.9 13 77-89 99-111 (262)
237 1sxj_A Activator 1 95 kDa subu 33.8 44 0.0015 27.9 4.4 41 75-117 147-189 (516)
238 2x9q_A Cyclodipeptide syntheta 33.8 27 0.00093 27.0 2.7 49 44-93 73-131 (289)
239 2qp9_X Vacuolar protein sortin 33.7 63 0.0021 25.5 5.1 15 76-90 143-157 (355)
240 3czc_A RMPB; alpha/beta sandwi 33.1 96 0.0033 19.8 5.8 12 50-61 66-77 (110)
241 2bjv_A PSP operon transcriptio 32.6 47 0.0016 24.7 4.0 26 77-103 101-126 (265)
242 1tvm_A PTS system, galactitol- 31.5 58 0.002 21.1 3.8 49 2-60 24-78 (113)
243 3d8b_A Fidgetin-like protein 1 30.1 60 0.0021 25.6 4.4 15 76-90 176-190 (357)
244 4ad8_A DNA repair protein RECN 29.7 15 0.00052 30.8 0.8 39 78-116 419-457 (517)
245 3r8r_A Transaldolase; pentose 29.6 1.3E+02 0.0045 22.1 5.8 55 9-68 142-196 (212)
246 1xwi_A SKD1 protein; VPS4B, AA 28.7 74 0.0025 24.7 4.7 14 76-89 105-118 (322)
247 3d6n_B Aspartate carbamoyltran 28.2 1.1E+02 0.0039 23.6 5.5 53 7-62 127-183 (291)
248 2ehv_A Hypothetical protein PH 27.6 39 0.0013 24.5 2.8 45 74-118 133-182 (251)
249 3vfd_A Spastin; ATPase, microt 27.6 93 0.0032 24.7 5.2 13 77-89 208-220 (389)
250 1zq6_A Otcase, ornithine carba 27.1 1.2E+02 0.0041 24.3 5.6 54 6-60 168-229 (359)
251 3pc6_A DNA repair protein XRCC 27.1 47 0.0016 21.4 2.7 72 13-86 25-99 (104)
252 2pju_A Propionate catabolism o 27.1 42 0.0014 25.0 2.8 54 3-57 16-69 (225)
253 1pg5_A Aspartate carbamoyltran 26.7 1.3E+02 0.0045 23.3 5.7 54 7-62 130-187 (299)
254 2zpa_A Uncharacterized protein 26.6 63 0.0022 28.3 4.1 96 15-118 180-289 (671)
255 1lv7_A FTSH; alpha/beta domain 26.6 1.1E+02 0.0038 22.4 5.2 14 77-90 105-118 (257)
256 1vlv_A Otcase, ornithine carba 25.8 1.3E+02 0.0044 23.7 5.5 53 7-62 148-203 (325)
257 1kae_A HDH, histidinol dehydro 25.5 30 0.001 28.6 1.8 27 1-27 267-293 (434)
258 2orv_A Thymidine kinase; TP4A 25.1 98 0.0034 23.2 4.5 37 75-116 89-125 (234)
259 3uk6_A RUVB-like 2; hexameric 25.0 88 0.003 24.3 4.5 13 78-90 191-203 (368)
260 1f2t_B RAD50 ABC-ATPase; DNA d 25.0 69 0.0024 21.8 3.4 42 75-116 80-122 (148)
261 1ixz_A ATP-dependent metallopr 24.9 1.3E+02 0.0046 21.9 5.4 44 77-120 109-165 (254)
262 4ekn_B Aspartate carbamoyltran 24.6 1.4E+02 0.0048 23.3 5.5 53 7-62 132-189 (306)
263 2d59_A Hypothetical protein PH 24.6 1.6E+02 0.0055 19.7 5.8 47 2-54 81-127 (144)
264 3csu_A Protein (aspartate carb 24.5 1.4E+02 0.0047 23.4 5.4 53 7-62 135-192 (310)
265 2l8b_A Protein TRAI, DNA helic 24.4 48 0.0016 24.0 2.5 85 28-116 52-158 (189)
266 1tue_A Replication protein E1; 24.4 62 0.0021 23.9 3.2 29 75-103 102-130 (212)
267 3r7f_A Aspartate carbamoyltran 24.3 1.8E+02 0.0061 22.7 6.0 54 7-63 128-185 (304)
268 2zan_A Vacuolar protein sortin 24.2 1.4E+02 0.0048 24.3 5.7 42 76-117 227-279 (444)
269 2q5c_A NTRC family transcripti 24.2 1.2E+02 0.004 21.8 4.7 40 28-68 119-158 (196)
270 3crv_A XPD/RAD3 related DNA he 24.0 1E+02 0.0035 25.9 5.0 70 2-85 396-471 (551)
271 3gm8_A Glycoside hydrolase fam 23.7 3.3E+02 0.011 24.3 8.3 50 59-116 332-394 (801)
272 1duv_G Octase-1, ornithine tra 23.4 94 0.0032 24.6 4.3 54 7-62 134-191 (333)
273 1ofh_A ATP-dependent HSL prote 23.3 1.1E+02 0.0037 22.9 4.7 16 76-91 116-131 (310)
274 2fqx_A Membrane lipoprotein TM 23.1 2.5E+02 0.0085 21.3 6.8 49 13-62 23-73 (318)
275 2i6u_A Otcase, ornithine carba 23.0 1.2E+02 0.0042 23.6 4.9 53 7-62 129-184 (307)
276 3s1x_A Probable transaldolase; 22.8 1.4E+02 0.0048 22.1 4.9 56 8-68 143-198 (223)
277 2iut_A DNA translocase FTSK; n 22.6 1E+02 0.0035 26.4 4.6 60 78-137 345-409 (574)
278 2ixe_A Antigen peptide transpo 22.6 1E+02 0.0035 23.2 4.3 40 74-113 172-212 (271)
279 1dxh_A Ornithine carbamoyltran 22.2 97 0.0033 24.5 4.2 54 7-62 135-191 (335)
280 2j9r_A Thymidine kinase; TK1, 22.1 1.2E+02 0.0043 22.2 4.5 36 76-115 101-136 (214)
281 1g8p_A Magnesium-chelatase 38 21.7 62 0.0021 24.9 3.0 25 77-102 145-169 (350)
282 2bkx_A Glucosamine-6-phosphate 21.4 2.4E+02 0.0082 20.5 8.2 36 163-198 191-237 (242)
283 2hqb_A Transcriptional activat 21.2 2.6E+02 0.009 20.9 9.2 69 14-84 24-95 (296)
284 2c9o_A RUVB-like 1; hexameric 20.9 1.1E+02 0.0038 25.0 4.4 12 78-89 297-308 (456)
285 2d2e_A SUFC protein; ABC-ATPas 20.9 1.2E+02 0.0039 22.6 4.2 40 75-114 160-199 (250)
286 3kts_A Glycerol uptake operon 20.2 2.5E+02 0.0085 20.2 5.8 84 41-135 71-155 (192)
287 3pvs_A Replication-associated 20.1 24 0.00083 29.1 0.3 16 75-90 105-120 (447)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=7.4e-32 Score=226.76 Aligned_cols=182 Identities=30% Similarity=0.474 Sum_probs=165.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
.+|||+||||||.|+++++++++... ++++..++||.....+...+ ..+++|+|+||++|.+++.. +.+++++++++
T Consensus 131 ~~lil~PtreLa~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l-~~~~~Ivv~Tp~~l~~~l~~-~~~~l~~~~~l 207 (434)
T 2db3_A 131 QVVIVSPTRELAIQIFNEARKFAFES-YLKIGIVYGGTSFRHQNECI-TRGCHVVIATPGRLLDFVDR-TFITFEDTRFV 207 (434)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHTTTS-SCCCCEECTTSCHHHHHHHH-TTCCSEEEECHHHHHHHHHT-TSCCCTTCCEE
T ss_pred cEEEEecCHHHHHHHHHHHHHHhccC-CcEEEEEECCCCHHHHHHHh-hcCCCEEEEChHHHHHHHHh-CCcccccCCeE
Confidence 48999999999999999999998776 79999999999988887777 56899999999999999988 78889999999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhC--CCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCC
Q 028826 81 VLDEADRLLDMGFQKQISYIISRL--PKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKT 158 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~--~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (203)
|+||||+|++++|.+.+..++..+ +..+|+++||||+|+.+..++..++.++..+.+... ...
T Consensus 208 VlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~---------------~~~ 272 (434)
T 2db3_A 208 VLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIV---------------GGA 272 (434)
T ss_dssp EEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESST---------------TCC
T ss_pred EEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccc---------------ccc
Confidence 999999999999999999999885 578999999999999999999999999999988776 456
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHhcCCCCeEEEEeccCCccc
Q 028826 159 PLGLHLEYLECESDKKPSQLVDLLIKNKSKKIIMYVQHGNFSE 201 (203)
Q Consensus 159 ~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~ns~~~~e 201 (203)
..++.+.+..++..+|...|.+++.....+ +|||||+++.|+
T Consensus 273 ~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~-~lVF~~t~~~a~ 314 (434)
T 2db3_A 273 CSDVKQTIYEVNKYAKRSKLIEILSEQADG-TIVFVETKRGAD 314 (434)
T ss_dssp CTTEEEEEEECCGGGHHHHHHHHHHHCCTT-EEEECSSHHHHH
T ss_pred ccccceEEEEeCcHHHHHHHHHHHHhCCCC-EEEEEeCcHHHH
Confidence 678999999999999999999999887655 999999998775
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.97 E-value=3.3e-29 Score=208.56 Aligned_cols=183 Identities=34% Similarity=0.540 Sum_probs=161.2
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
+||++||++|+.|+++.+++++... ++++..++||....++...+ ..+++|+|+||++|.+++.. +.+.+++++++|
T Consensus 104 ~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~I~v~Tp~~l~~~l~~-~~~~~~~~~~iV 180 (417)
T 2i4i_A 104 SLVLAPTRELAVQIYEEARKFSYRS-RVRPCVVYGGADIGQQIRDL-ERGCHLLVATPGRLVDMMER-GKIGLDFCKYLV 180 (417)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTS-SCCEEEECSSSCHHHHHHHH-TTCCSEEEECHHHHHHHHHT-TSBCCTTCCEEE
T ss_pred EEEECCcHHHHHHHHHHHHHHhCcC-CceEEEEECCCCHHHHHHHh-hCCCCEEEEChHHHHHHHHc-CCcChhhCcEEE
Confidence 7999999999999999999998776 89999999999988887777 56899999999999999988 778899999999
Q ss_pred EcchhHhhhhchHHHHHHHHHhC--CC--CCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCC
Q 028826 82 LDEADRLLDMGFQKQISYIISRL--PK--LRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSK 157 (203)
Q Consensus 82 iDEad~l~~~~~~~~~~~il~~~--~~--~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 157 (203)
+||||.+++++|...+..++... +. ..|++++|||+++.+..+...++.++..+.+... ..
T Consensus 181 iDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---------------~~ 245 (417)
T 2i4i_A 181 LDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRV---------------GS 245 (417)
T ss_dssp ESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC-------------------
T ss_pred EEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCC---------------CC
Confidence 99999999999999999999853 33 6899999999999999999999999988888765 45
Q ss_pred CCCceeEEEEEcCCCCcHHHHHHHHhcC-CCCeEEEEeccCCcccC
Q 028826 158 TPLGLHLEYLECESDKKPSQLVDLLIKN-KSKKIIMYVQHGNFSED 202 (203)
Q Consensus 158 ~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lIF~ns~~~~e~ 202 (203)
.+.++.+.+..++..+|...+.++++.. ..+++|||||+++.|++
T Consensus 246 ~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~ 291 (417)
T 2i4i_A 246 TSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADS 291 (417)
T ss_dssp CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHH
T ss_pred CccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHH
Confidence 6788999999999999999999999976 56799999999987753
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.97 E-value=2.7e-29 Score=208.88 Aligned_cols=183 Identities=30% Similarity=0.498 Sum_probs=164.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
.+||++||++|+.|+++.+++++... ++++..+.||....++...+ ..+++|+|+||+++.+++.. +.+.+.+++++
T Consensus 107 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~ivv~Tp~~l~~~l~~-~~~~~~~~~~v 183 (410)
T 2j0s_A 107 QALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDIRKL-DYGQHVVAGTPGRVFDMIRR-RSLRTRAIKML 183 (410)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECTTSCHHHHHHHH-HHCCSEEEECHHHHHHHHHT-TSSCCTTCCEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhccC-CeEEEEEECCCCHHHHHHHh-hcCCCEEEcCHHHHHHHHHh-CCccHhheeEE
Confidence 47999999999999999999998877 89999999999988887777 45789999999999999988 78889999999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCCC
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPL 160 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (203)
|+||||.+.++++...+..++..+++..|++++|||+++.+.++...++.+|..+.+... .....
T Consensus 184 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~ 248 (410)
T 2j0s_A 184 VLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRD---------------ELTLE 248 (410)
T ss_dssp EEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGG---------------GCSCT
T ss_pred EEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCc---------------cccCC
Confidence 999999999999999999999999999999999999999999999999999988877655 45667
Q ss_pred ceeEEEEEcCCCC-cHHHHHHHHhcCCCCeEEEEeccCCccc
Q 028826 161 GLHLEYLECESDK-KPSQLVDLLIKNKSKKIIMYVQHGNFSE 201 (203)
Q Consensus 161 ~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~lIF~ns~~~~e 201 (203)
++.+.+..++..+ |...+.+++.....+++|||||+++.++
T Consensus 249 ~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~ 290 (410)
T 2j0s_A 249 GIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVD 290 (410)
T ss_dssp TEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHH
T ss_pred CceEEEEEeCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHH
Confidence 8889988887765 9999999999888889999999988765
No 4
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.96 E-value=3.6e-28 Score=200.53 Aligned_cols=185 Identities=24% Similarity=0.475 Sum_probs=166.2
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
+||++||++|+.|+++.++++....+++++..+.||.....+...+....++|+|+||+++..++.. +.+.+.+++++|
T Consensus 79 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~vV 157 (391)
T 1xti_A 79 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN-KSLNLKHIKHFI 157 (391)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT-TSSCCTTCSEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCccccccCEEE
Confidence 7999999999999999999998887789999999999888777777667789999999999999988 778899999999
Q ss_pred EcchhHhhh-hchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCCC
Q 028826 82 LDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPL 160 (203)
Q Consensus 82 iDEad~l~~-~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (203)
+||||.+.+ .++...+..++...+...|++++|||+++.+..++..++.++..+...... .....
T Consensus 158 iDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~ 223 (391)
T 1xti_A 158 LDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDET--------------KLTLH 223 (391)
T ss_dssp ECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCC--------------CCCCT
T ss_pred EeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCcc--------------ccCcc
Confidence 999999987 478899999999999999999999999999999999999999888776552 33556
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCeEEEEeccCCccc
Q 028826 161 GLHLEYLECESDKKPSQLVDLLIKNKSKKIIMYVQHGNFSE 201 (203)
Q Consensus 161 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~ns~~~~e 201 (203)
++.+++..++..+|...+.++++....+++||||++++.|+
T Consensus 224 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~ 264 (391)
T 1xti_A 224 GLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCI 264 (391)
T ss_dssp TCEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSCHHHHH
T ss_pred cceEEEEEcCchhHHHHHHHHHHhcCCCcEEEEeCcHHHHH
Confidence 78889998888999999999999988899999999988765
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.96 E-value=2.3e-28 Score=203.11 Aligned_cols=184 Identities=31% Similarity=0.517 Sum_probs=166.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
.+||++||++|+.|+++.+++++... ++.+..+.||.....+...+...+++|+|+||+++.+++.. +.+.+.+++++
T Consensus 110 ~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~~~v 187 (414)
T 3eiq_A 110 QALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMF 187 (414)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHGGGS-CCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHH-TSSCSTTCCEE
T ss_pred eEEEEeChHHHHHHHHHHHHHHhccc-CceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcccccCcEE
Confidence 37999999999999999999998877 89999999999988888777667899999999999999988 88889999999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCCC
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPL 160 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (203)
|+||||.+.++++...+..++..+++..|++++|||+++.+..+...++.++..+..... .....
T Consensus 188 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~ 252 (414)
T 3eiq_A 188 VLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKE---------------ELTLE 252 (414)
T ss_dssp EECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCC---------------CCCTT
T ss_pred EEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCC---------------ccCCC
Confidence 999999999999999999999999999999999999999999999999999988887666 55677
Q ss_pred ceeEEEEEcCCC-CcHHHHHHHHhcCCCCeEEEEeccCCccc
Q 028826 161 GLHLEYLECESD-KKPSQLVDLLIKNKSKKIIMYVQHGNFSE 201 (203)
Q Consensus 161 ~i~~~~~~~~~~-~k~~~l~~ll~~~~~~~~lIF~ns~~~~e 201 (203)
.+.+.+..+... .|...+..+++....+++|||||+++.++
T Consensus 253 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~ 294 (414)
T 3eiq_A 253 GIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVD 294 (414)
T ss_dssp SCCEEEEECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHH
T ss_pred CceEEEEEeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHH
Confidence 888888888665 59999999999998899999999988765
No 6
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.96 E-value=6.6e-28 Score=187.84 Aligned_cols=137 Identities=36% Similarity=0.588 Sum_probs=127.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
.+||++|||+|+.|+++.++++.... ++++..++||.....+...+ ..+++|+|+||+++.+++.. +..++++++++
T Consensus 104 ~~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~I~v~Tp~~l~~~l~~-~~~~~~~~~~l 180 (242)
T 3fe2_A 104 ICLVLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQIRDL-ERGVEICIATPGRLIDFLEC-GKTNLRRTTYL 180 (242)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHHHT-TCCEEEECTTSCHHHHHHHH-HHCCSEEEECHHHHHHHHHH-TSCCCTTCCEE
T ss_pred EEEEEeCcHHHHHHHHHHHHHHHhhc-CceEEEEECCCChHHHHHHh-cCCCCEEEECHHHHHHHHHc-CCCCcccccEE
Confidence 37999999999999999999999887 89999999999988887777 45799999999999999988 88899999999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccC
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAE 140 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~ 140 (203)
|+||||++++++|...+..+++.+++.+|++++|||+|+.+..+++.++++|..|.++..
T Consensus 181 ViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 181 VLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp EETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred EEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 999999999999999999999999999999999999999999999999999999998764
No 7
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.95 E-value=2.9e-27 Score=195.12 Aligned_cols=183 Identities=31% Similarity=0.502 Sum_probs=123.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
.+||++||++|+.|+++.++++.... ++++..+.||....++...+. +++|+|+||+++..++.. +.+.+.+++++
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~--~~~i~v~T~~~l~~~~~~-~~~~~~~~~~v 166 (394)
T 1fuu_A 91 QALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLR--DAQIVVGTPGRVFDNIQR-RRFRTDKIKMF 166 (394)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEECSSCCHHHHHHHHH--HCSEEEECHHHHHHHHHT-TSSCCTTCCEE
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccC-CeeEEEEeCCCchHHHHhhcC--CCCEEEECHHHHHHHHHh-CCcchhhCcEE
Confidence 37999999999999999999998776 899999999988877766663 589999999999999988 77888999999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCCC
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPL 160 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (203)
|+||||.+.++++...+..++..+++..|++++|||+++.+..+...++.++..+..... .....
T Consensus 167 IiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~ 231 (394)
T 1fuu_A 167 ILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD---------------ELTLE 231 (394)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC---------------------
T ss_pred EEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCc---------------cccCC
Confidence 999999999999999999999999999999999999999999999999999998887665 44566
Q ss_pred ceeEEEEEcCCCC-cHHHHHHHHhcCCCCeEEEEeccCCcccC
Q 028826 161 GLHLEYLECESDK-KPSQLVDLLIKNKSKKIIMYVQHGNFSED 202 (203)
Q Consensus 161 ~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~lIF~ns~~~~e~ 202 (203)
++.+.+..++..+ |...+.++++....+++||||++++.+++
T Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~ 274 (394)
T 1fuu_A 232 GIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEE 274 (394)
T ss_dssp -------------------------------------------
T ss_pred CceEEEEEcCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHH
Confidence 7777777776654 88889999988888899999999998875
No 8
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.95 E-value=5.8e-27 Score=194.10 Aligned_cols=182 Identities=31% Similarity=0.480 Sum_probs=161.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
.+||++||++|+.|+++.++++.... ++++..+.||.....+...+ ..+++|+|+||+++.+++.. +...+.+++++
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~Ivv~T~~~l~~~~~~-~~~~~~~~~~v 167 (400)
T 1s2m_A 91 QALIMVPTRELALQTSQVVRTLGKHC-GISCMVTTGGTNLRDDILRL-NETVHILVGTPGRVLDLASR-KVADLSDCSLF 167 (400)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECSSSCHHHHHHHT-TSCCSEEEECHHHHHHHHHT-TCSCCTTCCEE
T ss_pred cEEEEcCCHHHHHHHHHHHHHHhccc-CceEEEEeCCcchHHHHHHh-cCCCCEEEEchHHHHHHHHh-CCcccccCCEE
Confidence 37999999999999999999998877 79999999998877666555 56899999999999999887 77889999999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCCC
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPL 160 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (203)
|+||||.+.+.++...+..++..+++..|++++|||++..+..++..++..+..+..... ....
T Consensus 168 IiDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~ 231 (400)
T 1s2m_A 168 IMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE----------------LTLK 231 (400)
T ss_dssp EEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS----------------CBCT
T ss_pred EEeCchHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc----------------cccC
Confidence 999999999989999999999999999999999999999999999999998877655443 3456
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCeEEEEeccCCccc
Q 028826 161 GLHLEYLECESDKKPSQLVDLLIKNKSKKIIMYVQHGNFSE 201 (203)
Q Consensus 161 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~ns~~~~e 201 (203)
++.+++..++...|...+..+++....+++|||||+++.++
T Consensus 232 ~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~ 272 (400)
T 1s2m_A 232 GITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVE 272 (400)
T ss_dssp TEEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSSHHHHH
T ss_pred CceeEEEEechhhHHHHHHHHHhhcCCCcEEEEEecHHHHH
Confidence 78888888888899999999999888889999999988765
No 9
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.95 E-value=9.6e-28 Score=203.74 Aligned_cols=183 Identities=26% Similarity=0.361 Sum_probs=119.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
.+|||+||++|+.|+++.++++....+++.+....++....... ..+++|+|+||+++.+++.+.+.+++++++++
T Consensus 164 ~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~i 239 (479)
T 3fmp_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 239 (479)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC----CCCCSEEEECHHHHHHHHTTSCCCCGGGCCEE
T ss_pred cEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc----cCCCCEEEECchHHHHHHHhcCCcCcccCCEE
Confidence 48999999999999999999999887788998888887654332 34689999999999999976467788999999
Q ss_pred EEcchhHhhh-hchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCC
Q 028826 81 VLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTP 159 (203)
Q Consensus 81 ViDEad~l~~-~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (203)
|+||||.+++ .++...+..+.+.+++.+|++++|||+++.+..++..++.++..+.+... ....
T Consensus 240 ViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~---------------~~~~ 304 (479)
T 3fmp_B 240 VLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE---------------EETL 304 (479)
T ss_dssp EECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC---------------------
T ss_pred EEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEecccc---------------ccCc
Confidence 9999999987 68999999999999999999999999999999999999999999988776 4567
Q ss_pred CceeEEEEEcCC-CCcHHHHHHHHhcCCCCeEEEEeccCCcccC
Q 028826 160 LGLHLEYLECES-DKKPSQLVDLLIKNKSKKIIMYVQHGNFSED 202 (203)
Q Consensus 160 ~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~ns~~~~e~ 202 (203)
..+.+.+..++. ..|...+..++.....+++||||++++.|++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~ 348 (479)
T 3fmp_B 305 DTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASW 348 (479)
T ss_dssp --------------------------------------------
T ss_pred CCceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHH
Confidence 788888888865 5789999999988888899999999998875
No 10
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.95 E-value=6.3e-27 Score=183.29 Aligned_cols=137 Identities=36% Similarity=0.586 Sum_probs=123.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
.+||++|||+|+.|+++.+++++... ++++..++||.+...+...+ ..+++|+|+||+++.+++.. +.+++++++++
T Consensus 102 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~Ivv~Tp~~l~~~l~~-~~~~~~~~~~l 178 (253)
T 1wrb_A 102 KCLILAPTRELAIQILSESQKFSLNT-PLRSCVVYGGADTHSQIREV-QMGCHLLVATPGRLVDFIEK-NKISLEFCKYI 178 (253)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHTTS-SCCEEEECSSSCSHHHHHHH-SSCCSEEEECHHHHHHHHHT-TSBCCTTCCEE
T ss_pred eEEEEECCHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHh-CCCCCEEEECHHHHHHHHHc-CCCChhhCCEE
Confidence 37999999999999999999998776 79999999999888777776 56899999999999999988 77889999999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhC--CC--CCcEEEEeeecChhHHHHHHhcCCCCeEEEeccC
Q 028826 81 VLDEADRLLDMGFQKQISYIISRL--PK--LRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAE 140 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~--~~--~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~ 140 (203)
|+||||++++++|...+..++..+ +. .+|++++|||+++++..+++.++.+|..+.+...
T Consensus 179 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 242 (253)
T 1wrb_A 179 VLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRV 242 (253)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC--
T ss_pred EEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCC
Confidence 999999999999999999999954 44 6899999999999999999999999999998776
No 11
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.95 E-value=2.1e-27 Score=190.79 Aligned_cols=135 Identities=28% Similarity=0.412 Sum_probs=122.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
+||||+||||||.|+++.+++++...+++++....||....... ..+++|+||||++|++++.+.+.+++++++++
T Consensus 164 ~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~l 239 (300)
T 3fmo_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 239 (300)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC----CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh----cCCCCEEEECHHHHHHHHHhcCCCChhhceEE
Confidence 48999999999999999999999887789999999987754332 45789999999999999966467889999999
Q ss_pred EEcchhHhhh-hchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEecc
Q 028826 81 VLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRA 139 (203)
Q Consensus 81 ViDEad~l~~-~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~ 139 (203)
|+||||+|++ .+|...+..+++.+++.+|+++||||+++.+..+++.++++|..|.+..
T Consensus 240 VlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~~ 299 (300)
T 3fmo_B 240 VLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR 299 (300)
T ss_dssp EETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEECC
T ss_pred EEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEecC
Confidence 9999999998 7899999999999999999999999999999999999999999998754
No 12
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.95 E-value=1.3e-26 Score=178.69 Aligned_cols=132 Identities=32% Similarity=0.556 Sum_probs=116.8
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
+||++||++|+.|+++.++++... ++++..++||.....+...+ ..+++|+|+||+++.+++.. +..++++++++|
T Consensus 97 ~lil~Pt~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~Tp~~l~~~~~~-~~~~~~~~~~lV 172 (228)
T 3iuy_A 97 MLVLTPTRELALHVEAECSKYSYK--GLKSICIYGGRNRNGQIEDI-SKGVDIIIATPGRLNDLQMN-NSVNLRSITYLV 172 (228)
T ss_dssp EEEECSSHHHHHHHHHHHHHHCCT--TCCEEEECC------CHHHH-HSCCSEEEECHHHHHHHHHT-TCCCCTTCCEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHhccc--CceEEEEECCCChHHHHHHh-cCCCCEEEECHHHHHHHHHc-CCcCcccceEEE
Confidence 799999999999999999999633 79999999998887777776 56899999999999999988 788899999999
Q ss_pred EcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEe
Q 028826 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEV 137 (203)
Q Consensus 82 iDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~ 137 (203)
+||||++++++|...+..++..+++.+|++++|||+|+.+.++++.++++|..+.+
T Consensus 173 iDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~v 228 (228)
T 3iuy_A 173 IDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV 228 (228)
T ss_dssp ECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEC
T ss_pred EECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEeC
Confidence 99999999999999999999999999999999999999999999999999998754
No 13
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.95 E-value=5.6e-27 Score=194.49 Aligned_cols=182 Identities=26% Similarity=0.372 Sum_probs=159.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
.+||++||++|+.|+++.++++....+++++....++....... ..+++|+|+||+++.+++...+.+++++++++
T Consensus 97 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~i 172 (412)
T 3fht_A 97 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 172 (412)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC----CCCCSEEEECHHHHHHHHTTSCSSCGGGCCEE
T ss_pred CEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh----cCCCCEEEECchHHHHHHHhcCCcChhhCcEE
Confidence 37999999999999999999998887789999998887654332 35689999999999999866467788999999
Q ss_pred EEcchhHhhh-hchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCC
Q 028826 81 VLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTP 159 (203)
Q Consensus 81 ViDEad~l~~-~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (203)
|+||||.+++ .++...+..+...+++..|++++|||+++.+..+...++.++..+.+... ....
T Consensus 173 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~ 237 (412)
T 3fht_A 173 VLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE---------------EETL 237 (412)
T ss_dssp EEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGG---------------GSSC
T ss_pred EEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccc---------------cccc
Confidence 9999999987 67889999999999999999999999999999999999999998888766 5567
Q ss_pred CceeEEEEEcCC-CCcHHHHHHHHhcCCCCeEEEEeccCCccc
Q 028826 160 LGLHLEYLECES-DKKPSQLVDLLIKNKSKKIIMYVQHGNFSE 201 (203)
Q Consensus 160 ~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~ns~~~~e 201 (203)
..+.+.+..+.. .+|...+..++.....+++||||++++.|+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~ 280 (412)
T 3fht_A 238 DTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTAS 280 (412)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHH
T ss_pred cCceEEEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHH
Confidence 788888888765 578999999999888889999999988765
No 14
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.94 E-value=4.8e-26 Score=178.21 Aligned_cols=136 Identities=38% Similarity=0.650 Sum_probs=124.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
.+||++|||+|+.|+++.+++++... ++++..++||.....+...+ ..+++|+|+||+++.+++...+.+++++++++
T Consensus 113 ~~lil~Ptr~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~l 190 (249)
T 3ber_A 113 FALVLTPTRELAFQISEQFEALGSSI-GVQSAVIVGGIDSMSQSLAL-AKKPHIIIATPGRLIDHLENTKGFNLRALKYL 190 (249)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHGGG-TCCEEEECTTSCHHHHHHHH-HTCCSEEEECHHHHHHHHHHSTTCCCTTCCEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhccC-CeeEEEEECCCChHHHHHHh-cCCCCEEEECHHHHHHHHHcCCCcCccccCEE
Confidence 38999999999999999999998877 89999999998877777666 46899999999999999886456789999999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEec
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVR 138 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~ 138 (203)
|+||||++++++|...+..++..+++.+|++++|||+++.+.++++.++++|..+.+.
T Consensus 191 ViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 191 VMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred EEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999999999999999999999999999999999999988764
No 15
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.94 E-value=2.1e-26 Score=178.87 Aligned_cols=137 Identities=34% Similarity=0.583 Sum_probs=113.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
.+||++||++|+.|+++.+++++... ++++..+.||.....+...+....++|+|+||+++.+++.. +.+.+++++++
T Consensus 100 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~-~~~~~~~~~~l 177 (237)
T 3bor_A 100 QALVLAPTRELAQQIQKVILALGDYM-GATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNR-RYLSPKWIKMF 177 (237)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECC-------------CCCSEEEECHHHHHHHHHT-TSSCSTTCCEE
T ss_pred eEEEEECcHHHHHHHHHHHHHHhhhc-CceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHh-CCcCcccCcEE
Confidence 47999999999999999999998776 78999999998877777777555699999999999999988 77889999999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEecc
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRA 139 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~ 139 (203)
|+||||++++++|...+..+++.++...|++++|||+|+++.++++.++++|..+.+..
T Consensus 178 ViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~~ 236 (237)
T 3bor_A 178 VLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKK 236 (237)
T ss_dssp EEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC---
T ss_pred EECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999887643
No 16
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.94 E-value=4e-26 Score=176.44 Aligned_cols=135 Identities=30% Similarity=0.530 Sum_probs=122.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
.+||++||++|+.|+++.+++++...+++++..+.||....++...+ .+++|+|+||+++.+++.. +.+++++++++
T Consensus 94 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~Iiv~Tp~~l~~~~~~-~~~~~~~~~~l 170 (230)
T 2oxc_A 94 QILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL--KKCHIAVGSPGRIKQLIEL-DYLNPGSIRLF 170 (230)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT--TSCSEEEECHHHHHHHHHT-TSSCGGGCCEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc--cCCCEEEECHHHHHHHHhc-CCcccccCCEE
Confidence 47999999999999999999998776689999999998877666555 4799999999999999987 77889999999
Q ss_pred EEcchhHhhhhc-hHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEec
Q 028826 81 VLDEADRLLDMG-FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVR 138 (203)
Q Consensus 81 ViDEad~l~~~~-~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~ 138 (203)
|+||||+++++| |.+.+..+++.++..+|++++|||+|+.+.++++.++++|..+.++
T Consensus 171 ViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~~ 229 (230)
T 2oxc_A 171 ILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRLN 229 (230)
T ss_dssp EESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC-
T ss_pred EeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEcC
Confidence 999999999987 9999999999999999999999999999999999999999988653
No 17
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=9.2e-26 Score=173.01 Aligned_cols=136 Identities=25% Similarity=0.531 Sum_probs=124.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
.+||++||++|+.|+++.++++....+++++..++||.....+...+....++|+|+||+++..++.. +.+.+++++++
T Consensus 84 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~l 162 (220)
T 1t6n_A 84 SVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN-KSLNLKHIKHF 162 (220)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT-TSSCCTTCCEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHh-CCCCcccCCEE
Confidence 37999999999999999999998877789999999999888887777667789999999999999988 77889999999
Q ss_pred EEcchhHhhh-hchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEe
Q 028826 81 VLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEV 137 (203)
Q Consensus 81 ViDEad~l~~-~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~ 137 (203)
|+||||++++ .++...+..+++.+++.+|++++|||+++.+.++++.++++|..+.+
T Consensus 163 ViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~v 220 (220)
T 1t6n_A 163 ILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 220 (220)
T ss_dssp EEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEEC
T ss_pred EEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEeC
Confidence 9999999987 58999999999999999999999999999999999999999988753
No 18
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.94 E-value=4.2e-26 Score=197.97 Aligned_cols=190 Identities=27% Similarity=0.392 Sum_probs=150.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhh---cCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFIS---TLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~---~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v 77 (203)
.+|||+||++|+.|+++.++++.. ..+.+.+..+.||.....+...+...+++|+|+||++|.+++.......++++
T Consensus 97 ~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~ 176 (579)
T 3sqw_A 97 KAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFV 176 (579)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTC
T ss_pred eEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccC
Confidence 379999999999999999999875 33467899999999988888888667899999999999998876224578899
Q ss_pred cEEEEcchhHhhhhchHHHHHHHHHhCC-------CCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchh
Q 028826 78 VILVLDEADRLLDMGFQKQISYIISRLP-------KLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASS 150 (203)
Q Consensus 78 ~~lViDEad~l~~~~~~~~~~~il~~~~-------~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~ 150 (203)
+++|+||||++++++|.+.+..++..++ ..+|+++||||+++.+..++..++.++..+.+.....
T Consensus 177 ~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~-------- 248 (579)
T 3sqw_A 177 DYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDK-------- 248 (579)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCS--------
T ss_pred CEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCc--------
Confidence 9999999999999999999999887764 3679999999999999999999999988776644210
Q ss_pred hhhccCCCCCceeEEEEEcCCC-CcH----HHHHHHHhc-CCCCeEEEEeccCCccc
Q 028826 151 QQLASSKTPLGLHLEYLECESD-KKP----SQLVDLLIK-NKSKKIIMYVQHGNFSE 201 (203)
Q Consensus 151 ~~~~~~~~~~~i~~~~~~~~~~-~k~----~~l~~ll~~-~~~~~~lIF~ns~~~~e 201 (203)
........+.+.+...+.. .+. ..+...+.. ....++||||+|++.|+
T Consensus 249 ---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~ 302 (579)
T 3sqw_A 249 ---NEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTS 302 (579)
T ss_dssp ---SSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHH
T ss_pred ---cccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHH
Confidence 0033456677777777653 222 333333333 56779999999988775
No 19
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.94 E-value=1.3e-25 Score=183.31 Aligned_cols=176 Identities=28% Similarity=0.485 Sum_probs=155.0
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
+||++||++|+.|+.+.++++.... ++++..+.||.....+...+. +++|+|+||+++..++.. +...+.+++++|
T Consensus 77 ~lil~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~--~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iI 152 (367)
T 1hv8_A 77 AIILTPTRELAIQVADEIESLKGNK-NLKIAKIYGGKAIYPQIKALK--NANIVVGTPGRILDHINR-GTLNLKNVKYFI 152 (367)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHCSS-CCCEEEECTTSCHHHHHHHHH--TCSEEEECHHHHHHHHHT-TCSCTTSCCEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHHhCCC-CceEEEEECCcchHHHHhhcC--CCCEEEecHHHHHHHHHc-CCcccccCCEEE
Confidence 7999999999999999999998765 789999999998877776663 689999999999999987 778899999999
Q ss_pred EcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCCCc
Q 028826 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLG 161 (203)
Q Consensus 82 iDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (203)
+||||.+.++++...+..++..+++..|++++|||+++....+...++.++..+..... .+
T Consensus 153 iDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~ 213 (367)
T 1hv8_A 153 LDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKIN-------------------AN 213 (367)
T ss_dssp EETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSS-------------------SS
T ss_pred EeCchHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecCC-------------------CC
Confidence 99999999999999999999999999999999999999999999989888776654433 46
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCeEEEEeccCCccc
Q 028826 162 LHLEYLECESDKKPSQLVDLLIKNKSKKIIMYVQHGNFSE 201 (203)
Q Consensus 162 i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~ns~~~~e 201 (203)
+.+.+..++..+|...+.++++ ....++||||++++.++
T Consensus 214 ~~~~~~~~~~~~~~~~l~~~l~-~~~~~~lvf~~~~~~~~ 252 (367)
T 1hv8_A 214 IEQSYVEVNENERFEALCRLLK-NKEFYGLVFCKTKRDTK 252 (367)
T ss_dssp SEEEEEECCGGGHHHHHHHHHC-STTCCEEEECSSHHHHH
T ss_pred ceEEEEEeChHHHHHHHHHHHh-cCCCcEEEEECCHHHHH
Confidence 7788888888899999999997 45568999999988765
No 20
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=1.4e-25 Score=170.25 Aligned_cols=133 Identities=32% Similarity=0.567 Sum_probs=122.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
.+||++||++|+.|+++.++++....+++++..+.||....++...+ ..+++|+|+||+++.+++.. +...+++++++
T Consensus 73 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~l 150 (206)
T 1vec_A 73 QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRL-DDTVHVVIATPGRILDLIKK-GVAKVDHVQMI 150 (206)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHT-TSCCSEEEECHHHHHHHHHT-TCSCCTTCCEE
T ss_pred eEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhc-CCCCCEEEeCHHHHHHHHHc-CCcCcccCCEE
Confidence 37999999999999999999998877789999999998887776665 56899999999999999988 77889999999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEE
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRI 135 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i 135 (203)
|+||||++.+.+|...+..++..+++..|++++|||+|+.+.++++.++.+|..+
T Consensus 151 ViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 151 VLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp EEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred EEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 9999999999999999999999999999999999999999999999999999865
No 21
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.94 E-value=1.1e-25 Score=177.47 Aligned_cols=131 Identities=40% Similarity=0.642 Sum_probs=119.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
.+||++|||+||.|+++.+++++... +.++..++||.....+...+. .+++|+|+||+++.+++.....+.+++++++
T Consensus 128 ~~lil~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~l 205 (262)
T 3ly5_A 128 GVLILSPTRELAMQTFGVLKELMTHH-VHTYGLIMGGSNRSAEAQKLG-NGINIIVATPGRLLDHMQNTPGFMYKNLQCL 205 (262)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTC-CSCEEEECSSSCHHHHHHHHH-HCCSEEEECHHHHHHHHHHCTTCCCTTCCEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHHhc-CCCCEEEEcHHHHHHHHHccCCcccccCCEE
Confidence 38999999999999999999998877 789999999998887777774 5699999999999998887445789999999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCe
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPV 133 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~ 133 (203)
|+||||++++++|...+..+++.+++.+|++++|||+|+.+..+++.+++++.
T Consensus 206 ViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 206 VIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred EEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999988543
No 22
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.94 E-value=1.8e-25 Score=173.22 Aligned_cols=136 Identities=42% Similarity=0.648 Sum_probs=121.7
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
.+||++||++|+.|+++.+++++... ++++..++||.....+...+ .+++|+|+||+++.+++.....+++.+++++
T Consensus 99 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~--~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~l 175 (236)
T 2pl3_A 99 GVLIISPTRELAYQTFEVLRKVGKNH-DFSAGLIIGGKDLKHEAERI--NNINILVCTPGRLLQHMDETVSFHATDLQML 175 (236)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTS-SCCEEEECCC--CHHHHHHH--TTCSEEEECHHHHHHHHHHCSSCCCTTCCEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCC-CeeEEEEECCCCHHHHHHhC--CCCCEEEECHHHHHHHHHhcCCcccccccEE
Confidence 37999999999999999999998776 79999999998877766665 4799999999999999887345788999999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEecc
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRA 139 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~ 139 (203)
|+||||++.+++|...+..++..+++.+|++++|||+++.+.++++.++.+|..+.+..
T Consensus 176 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 234 (236)
T 2pl3_A 176 VLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHE 234 (236)
T ss_dssp EETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECCC
T ss_pred EEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999988754
No 23
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.94 E-value=4.6e-26 Score=174.74 Aligned_cols=138 Identities=36% Similarity=0.574 Sum_probs=122.3
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCC---CceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLP---DVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~---~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v 77 (203)
.+||++||++|+.|+++.++++....+ ++++..+.||.+...+.+.+ ..+++|+|+||+++.+++.. +.++++++
T Consensus 74 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~ 151 (219)
T 1q0u_A 74 QAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKL-NVQPHIVIGTPGRINDFIRE-QALDVHTA 151 (219)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCC-SSCCSEEEECHHHHHHHHHT-TCCCGGGC
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHc-CCCCCEEEeCHHHHHHHHHc-CCCCcCcc
Confidence 379999999999999999999987653 57888899998766555444 35799999999999999988 78889999
Q ss_pred cEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccC
Q 028826 78 VILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAE 140 (203)
Q Consensus 78 ~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~ 140 (203)
+++|+||||++.++++...+..++..+++..|++++|||+|+++.++++.++++|..+.+...
T Consensus 152 ~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~~ 214 (219)
T 1q0u_A 152 HILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLEH 214 (219)
T ss_dssp CEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC--
T ss_pred eEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeecc
Confidence 999999999999999999999999999999999999999999999999999999999887664
No 24
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.94 E-value=4e-25 Score=178.61 Aligned_cols=177 Identities=29% Similarity=0.504 Sum_probs=150.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
.+||++||++|+.|+++.+++++... ++++..++||.....+...+ ..++|+|+||+++..++.. +.+++.+++++
T Consensus 58 ~~liv~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~i 133 (337)
T 2z0m_A 58 KSLVVTPTRELTRQVASHIRDIGRYM-DTKVAEVYGGMPYKAQINRV--RNADIVVATPGRLLDLWSK-GVIDLSSFEIV 133 (337)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEECTTSCHHHHHHHH--TTCSEEEECHHHHHHHHHT-TSCCGGGCSEE
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhhc-CCcEEEEECCcchHHHHhhc--CCCCEEEECHHHHHHHHHc-CCcchhhCcEE
Confidence 37999999999999999999998776 78999999998887776665 3599999999999999887 77889999999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCCC
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPL 160 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (203)
|+||||.+.++++...+..++..++...|++++|||+++.+......++.++..+.... ...
T Consensus 134 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~------------------~~~ 195 (337)
T 2z0m_A 134 IIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEACI------------------GLA 195 (337)
T ss_dssp EEESHHHHHHTTCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECSG------------------GGG
T ss_pred EEEChHHhhccccHHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeeccc------------------ccC
Confidence 99999999999999999999999999999999999999999999999998887664322 345
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCeEEEEeccCCccc
Q 028826 161 GLHLEYLECESDKKPSQLVDLLIKNKSKKIIMYVQHGNFSE 201 (203)
Q Consensus 161 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~ns~~~~e 201 (203)
++.+.+..++...+ .....+.....+++||||++++.++
T Consensus 196 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~lvf~~~~~~~~ 234 (337)
T 2z0m_A 196 NVEHKFVHVKDDWR--SKVQALRENKDKGVIVFVRTRNRVA 234 (337)
T ss_dssp GEEEEEEECSSSSH--HHHHHHHTCCCSSEEEECSCHHHHH
T ss_pred CceEEEEEeChHHH--HHHHHHHhCCCCcEEEEEcCHHHHH
Confidence 67777777665543 3346777788889999999988765
No 25
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.93 E-value=1.4e-25 Score=193.76 Aligned_cols=190 Identities=27% Similarity=0.393 Sum_probs=149.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhc---CCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFIST---LPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~---~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v 77 (203)
.+|||+||++||.|+++.++++... .+.+.+..+.||.....+...+...+++|+|+||+++.+++.......++++
T Consensus 148 ~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~ 227 (563)
T 3i5x_A 148 KAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFV 227 (563)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTC
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccc
Confidence 3799999999999999999998653 3357789999999988888877667899999999999998876224468899
Q ss_pred cEEEEcchhHhhhhchHHHHHHHHHhCC-------CCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchh
Q 028826 78 VILVLDEADRLLDMGFQKQISYIISRLP-------KLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASS 150 (203)
Q Consensus 78 ~~lViDEad~l~~~~~~~~~~~il~~~~-------~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~ 150 (203)
+++|+||||++++++|.+.+..++..++ ...|++++|||+++.+..++..++.++..+.+.....
T Consensus 228 ~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~-------- 299 (563)
T 3i5x_A 228 DYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDK-------- 299 (563)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCS--------
T ss_pred eEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCC--------
Confidence 9999999999999999999998887763 3679999999999999999999999887776644310
Q ss_pred hhhccCCCCCceeEEEEEcCCC-CcH----HHHHHHHhc-CCCCeEEEEeccCCccc
Q 028826 151 QQLASSKTPLGLHLEYLECESD-KKP----SQLVDLLIK-NKSKKIIMYVQHGNFSE 201 (203)
Q Consensus 151 ~~~~~~~~~~~i~~~~~~~~~~-~k~----~~l~~ll~~-~~~~~~lIF~ns~~~~e 201 (203)
........+.+.+...+.. .+. ..+...+.. ...+++||||+|++.|+
T Consensus 300 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~ 353 (563)
T 3i5x_A 300 ---NEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTS 353 (563)
T ss_dssp ---SSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHH
T ss_pred ---CCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHH
Confidence 0033456677777776653 232 233333333 56779999999998775
No 26
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.93 E-value=2e-25 Score=183.90 Aligned_cols=179 Identities=28% Similarity=0.415 Sum_probs=154.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
.+||++||++|+.|+++.+++++... ++.+....++...... ..+++|+|+||+++..++.. +...+++++++
T Consensus 77 ~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~i 149 (395)
T 3pey_A 77 QAICLAPSRELARQTLEVVQEMGKFT-KITSQLIVPDSFEKNK-----QINAQVIVGTPGTVLDLMRR-KLMQLQKIKIF 149 (395)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEESTTSSCTTS-----CBCCSEEEECHHHHHHHHHT-TCBCCTTCCEE
T ss_pred cEEEECCCHHHHHHHHHHHHHHhccc-CeeEEEEecCchhhhc-----cCCCCEEEEcHHHHHHHHHc-CCcccccCCEE
Confidence 37999999999999999999998766 7888888877553322 34789999999999999988 77889999999
Q ss_pred EEcchhHhhh-hchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCC
Q 028826 81 VLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTP 159 (203)
Q Consensus 81 ViDEad~l~~-~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (203)
|+||||.+.+ .++...+..+...+++..|++++|||+++.+..+...++.++..+..... ....
T Consensus 150 IiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~ 214 (395)
T 3pey_A 150 VLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTN---------------EVNV 214 (395)
T ss_dssp EEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGG---------------GCSC
T ss_pred EEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEcccc---------------cccc
Confidence 9999999987 67899999999999999999999999999999999999999988877665 4566
Q ss_pred CceeEEEEEcCC-CCcHHHHHHHHhcCCCCeEEEEeccCCccc
Q 028826 160 LGLHLEYLECES-DKKPSQLVDLLIKNKSKKIIMYVQHGNFSE 201 (203)
Q Consensus 160 ~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~ns~~~~e 201 (203)
..+.+.+..+.. ..|...+..++.....+++|||||+++.|+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~ 257 (395)
T 3pey_A 215 DAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTAN 257 (395)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHH
T ss_pred ccccEEEEEcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHH
Confidence 778888887754 568889999998888899999999988765
No 27
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.93 E-value=8.9e-25 Score=165.74 Aligned_cols=133 Identities=33% Similarity=0.546 Sum_probs=120.7
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
.+||++||++|+.|+++.++++.. ++++..++||.....+...+ ..+++|+|+||+++.+++.. +..++++++++
T Consensus 74 ~~lil~P~~~L~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~i 148 (207)
T 2gxq_A 74 RALVLTPTRELALQVASELTAVAP---HLKVVAVYGGTGYGKQKEAL-LRGADAVVATPGRALDYLRQ-GVLDLSRVEVA 148 (207)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHCT---TSCEEEECSSSCSHHHHHHH-HHCCSEEEECHHHHHHHHHH-TSSCCTTCSEE
T ss_pred cEEEEECCHHHHHHHHHHHHHHhh---cceEEEEECCCChHHHHHHh-hCCCCEEEECHHHHHHHHHc-CCcchhhceEE
Confidence 379999999999999999999864 37788899998877776666 35799999999999999988 88889999999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEec
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVR 138 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~ 138 (203)
|+||||.+.+.++...+..++..+++.+|++++|||+++.+.++++.++.+|..+.+.
T Consensus 149 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~~ 206 (207)
T 2gxq_A 149 VLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINVI 206 (207)
T ss_dssp EEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEECC
T ss_pred EEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEcC
Confidence 9999999999999999999999999999999999999999999999999999988763
No 28
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.93 E-value=7.1e-25 Score=168.42 Aligned_cols=136 Identities=35% Similarity=0.591 Sum_probs=114.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
.+||++||++|+.|+++.+++++... ++++..+.||....++...+ ..++|+|+||+++.+++.. +...+++++++
T Consensus 84 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~--~~~~iiv~Tp~~l~~~~~~-~~~~~~~~~~i 159 (224)
T 1qde_A 84 QALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGL--RDAQIVVGTPGRVFDNIQR-RRFRTDKIKMF 159 (224)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEECC----------C--TTCSEEEECHHHHHHHHHT-TSSCCTTCCEE
T ss_pred eEEEEECCHHHHHHHHHHHHHHhccc-CceEEEEeCCcchHHHHhcC--CCCCEEEECHHHHHHHHHh-CCcchhhCcEE
Confidence 37999999999999999999998776 89999999998877666555 2499999999999999988 78889999999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccC
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAE 140 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~ 140 (203)
|+||||.+.++++...+..++..+++..|++++|||+++.+.++++.++.+|..+.+..+
T Consensus 160 ViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 160 ILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred EEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 999999999999999999999999999999999999999999999999999999887654
No 29
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.92 E-value=8.2e-25 Score=170.38 Aligned_cols=139 Identities=27% Similarity=0.385 Sum_probs=117.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhC-CCccCCCccE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM-DVLDFRNLVI 79 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~-~~~~l~~v~~ 79 (203)
.+||++||++|+.|+++.+++++... ++++..+.||.............+++|+|+||+++..++... ..++++++++
T Consensus 100 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~ 178 (245)
T 3dkp_A 100 RALIISPTRELASQIHRELIKISEGT-GFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEW 178 (245)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTS-CCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhccc-CceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcE
Confidence 38999999999999999999998877 788888887755443332233467899999999999999872 1578999999
Q ss_pred EEEcchhHhhh---hchHHHHHHHHHhCC-CCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccC
Q 028826 80 LVLDEADRLLD---MGFQKQISYIISRLP-KLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAE 140 (203)
Q Consensus 80 lViDEad~l~~---~~~~~~~~~il~~~~-~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~ 140 (203)
+|+||||.+++ .+|...+..++..+. ...|++++|||+|+++.++++.++.+|..+.++..
T Consensus 179 lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 179 LVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp EEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred EEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 99999999998 468999999887764 57899999999999999999999999999998764
No 30
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.92 E-value=4.3e-25 Score=184.07 Aligned_cols=174 Identities=18% Similarity=0.202 Sum_probs=134.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcch---HHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEV---KADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~---~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v 77 (203)
.+||++||++|+.|+++.+++++. . ++++..++||.+. ..+...+..+.++|+|+||+++.+++.. +.++++
T Consensus 66 ~~lil~Pt~~L~~q~~~~~~~~~~-~-~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~---~~~~~~ 140 (414)
T 3oiy_A 66 KSALVFPTVTLVKQTLERLQKLAD-E-KVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRF 140 (414)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHCC-S-SCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH---HTTCCC
T ss_pred EEEEEECCHHHHHHHHHHHHHHcc-C-CceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH---hccccc
Confidence 489999999999999999999977 4 8999999999987 5555666555699999999999988764 667899
Q ss_pred cEEEEcchhHhh----------h-hchHHH-HHHHHHhCC-----------CCCcEEEEeee-cChhHH-HHHHhcCCCC
Q 028826 78 VILVLDEADRLL----------D-MGFQKQ-ISYIISRLP-----------KLRRTGLFSAT-QTEAVE-ELSKAGLRNP 132 (203)
Q Consensus 78 ~~lViDEad~l~----------~-~~~~~~-~~~il~~~~-----------~~~q~i~~SAT-~~~~v~-~~~~~~l~~~ 132 (203)
+++|+||||++. + .+|.+. +..++..++ ...|++++||| .|+.+. .+.+.++.
T Consensus 141 ~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-- 218 (414)
T 3oiy_A 141 DFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-- 218 (414)
T ss_dssp SEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS--
T ss_pred cEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc--
Confidence 999999997654 4 677777 788888876 78999999999 665544 23333322
Q ss_pred eEEEeccCcccccccchhhhhccCCCCCceeEEEEEcCCCCcHHHHHHHHhcCCCCeEEEEeccCCcccC
Q 028826 133 VRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPSQLVDLLIKNKSKKIIMYVQHGNFSED 202 (203)
Q Consensus 133 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~ns~~~~e~ 202 (203)
+.+... .....++.+.+..+ +|...+.++++.. ++++|||||+++.|++
T Consensus 219 --~~~~~~---------------~~~~~~i~~~~~~~---~~~~~l~~~l~~~-~~~~lVF~~~~~~~~~ 267 (414)
T 3oiy_A 219 --FTVGRL---------------VSVARNITHVRISS---RSKEKLVELLEIF-RDGILIFAQTEEEGKE 267 (414)
T ss_dssp --CCSSCC---------------CCCCCSEEEEEESS---CCHHHHHHHHHHH-CSSEEEEESSHHHHHH
T ss_pred --cCcCcc---------------ccccccchheeecc---CHHHHHHHHHHHc-CCCEEEEECCHHHHHH
Confidence 112222 34567788888655 6788888888873 4799999999987753
No 31
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.92 E-value=3.7e-24 Score=183.17 Aligned_cols=180 Identities=31% Similarity=0.461 Sum_probs=140.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
.+||++|+++|+.|+++.+++++... ++.+....++...... ..+++|+|+||+++..++.. +.+.+.+++++
T Consensus 191 ~vLvl~P~~~L~~Q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~Ivv~T~~~l~~~l~~-~~~~~~~~~lI 263 (508)
T 3fho_A 191 QAICLAPSRELARQIMDVVTEMGKYT-EVKTAFGIKDSVPKGA-----KIDAQIVIGTPGTVMDLMKR-RQLDARDIKVF 263 (508)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHSTTS-SCCEEC---------------CCCCSEEEECHHHHHHHHHT-TCSCCTTCCEE
T ss_pred eEEEEECcHHHHHHHHHHHHHhCCcc-CeeEEEEeCCcccccc-----cCCCCEEEECHHHHHHHHHc-CCccccCCCEE
Confidence 37999999999999999999998766 6776666655433221 34789999999999999988 77889999999
Q ss_pred EEcchhHhhh-hchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCC
Q 028826 81 VLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTP 159 (203)
Q Consensus 81 ViDEad~l~~-~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (203)
|+||+|.+.+ .++...+..+...+++..|++++|||+++.+..+...+..++..+.+... ....
T Consensus 264 IiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~---------------~~~~ 328 (508)
T 3fho_A 264 VLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTE---------------ELSV 328 (508)
T ss_dssp EECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCC---------------C---
T ss_pred EEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccc---------------cCCc
Confidence 9999999987 67999999999999999999999999999999999999999988877665 4455
Q ss_pred CceeEEEEEcCC-CCcHHHHHHHHhcCCCCeEEEEeccCCcccC
Q 028826 160 LGLHLEYLECES-DKKPSQLVDLLIKNKSKKIIMYVQHGNFSED 202 (203)
Q Consensus 160 ~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~ns~~~~e~ 202 (203)
..+.+.+..+.. ..|...+..++.....+++|||||+++.|++
T Consensus 329 ~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~ 372 (508)
T 3fho_A 329 EGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEE 372 (508)
T ss_dssp -CCCCEEEEC--CHHHHHHHHHHHC---CCCEEEBCSSTTTTTH
T ss_pred ccceEEEEECCchHHHHHHHHHHHHhcCCCcEEEEECCHHHHHH
Confidence 667777777744 5688889999988888899999999998864
No 32
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.91 E-value=3.6e-24 Score=196.72 Aligned_cols=174 Identities=19% Similarity=0.216 Sum_probs=138.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcch---HHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEV---KADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~---~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v 77 (203)
.+|||+||+|||.|+++.+++++ .. ++++..++||.+. .++...+..+.++|+|+||++|.+++.. ++++++
T Consensus 123 ~~Lil~PtreLa~Q~~~~l~~l~-~~-~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~---l~~~~l 197 (1104)
T 4ddu_A 123 KSALVFPTVTLVKQTLERLQKLA-DE-KVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRF 197 (1104)
T ss_dssp CEEEEESSHHHHHHHHHHHHTTS-CT-TSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH---HHTSCC
T ss_pred eEEEEechHHHHHHHHHHHHHhh-CC-CCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh---hcccCc
Confidence 48999999999999999999987 44 8999999999987 6666677555699999999999888764 677899
Q ss_pred cEEEEcchh----------Hhhh-hchHHH-HHHHHHhCC-----------CCCcEEEEeee-cChhHHH-HHHhcCCCC
Q 028826 78 VILVLDEAD----------RLLD-MGFQKQ-ISYIISRLP-----------KLRRTGLFSAT-QTEAVEE-LSKAGLRNP 132 (203)
Q Consensus 78 ~~lViDEad----------~l~~-~~~~~~-~~~il~~~~-----------~~~q~i~~SAT-~~~~v~~-~~~~~l~~~ 132 (203)
+++|+|||| .+++ +||... +..+++.++ ...|+++|||| .|..+.. +.+..+.
T Consensus 198 ~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~-- 275 (1104)
T 4ddu_A 198 DFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-- 275 (1104)
T ss_dssp SEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC--
T ss_pred CEEEEeCCCccccccccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee--
Confidence 999999995 5556 888888 899999887 88999999999 5655542 3333333
Q ss_pred eEEEeccCcccccccchhhhhccCCCCCceeEEEEEcCCCCcHHHHHHHHhcCCCCeEEEEeccCCcccC
Q 028826 133 VRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPSQLVDLLIKNKSKKIIMYVQHGNFSED 202 (203)
Q Consensus 133 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~ns~~~~e~ 202 (203)
+.+... ...+.++.+.+..+ +|...|.++++..+ +++|||||+++.|++
T Consensus 276 --i~v~~~---------------~~~~~~i~~~~~~~---~k~~~L~~ll~~~~-~~~LVF~~s~~~a~~ 324 (1104)
T 4ddu_A 276 --FTVGRL---------------VSVARNITHVRISS---RSKEKLVELLEIFR-DGILIFAQTEEEGKE 324 (1104)
T ss_dssp --CCCCBC---------------CCCCCCEEEEEESC---CCHHHHHHHHHHHC-SSEEEEESSSHHHHH
T ss_pred --EEeccC---------------CCCcCCceeEEEec---CHHHHHHHHHHhcC-CCEEEEECcHHHHHH
Confidence 223333 44677888888766 67888888888743 799999999987763
No 33
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.89 E-value=8.1e-23 Score=187.85 Aligned_cols=125 Identities=22% Similarity=0.190 Sum_probs=107.5
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
+||++|||+|+.|+++.+.++.. .++.++|+.+. +.+++|+|+||++|.+++.. +...+++++++|
T Consensus 230 vlvl~PtraLa~Q~~~~l~~~~~-----~VglltGd~~~--------~~~~~IlV~Tpe~L~~~L~~-~~~~l~~l~lVV 295 (1108)
T 3l9o_A 230 VIYTSPIKALSNQKYRELLAEFG-----DVGLMTGDITI--------NPDAGCLVMTTEILRSMLYR-GSEVMREVAWVI 295 (1108)
T ss_dssp EEEEESSHHHHHHHHHHHHHHTS-----SEEEECSSCBC--------CCSCSEEEEEHHHHHHHHHH-CSSHHHHEEEEE
T ss_pred EEEEcCcHHHHHHHHHHHHHHhC-----CccEEeCcccc--------CCCCCEEEeChHHHHHHHHc-CccccccCCEEE
Confidence 79999999999999999999753 57778888763 46799999999999999998 777789999999
Q ss_pred EcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChh--HHHHHHhcCCCCeEEEeccC
Q 028826 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA--VEELSKAGLRNPVRIEVRAE 140 (203)
Q Consensus 82 iDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~--v~~~~~~~l~~~~~i~~~~~ 140 (203)
|||||++.++++...+..++..++...|++++|||+|+. +..++......+..+.....
T Consensus 296 IDEaH~l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~ 356 (1108)
T 3l9o_A 296 FDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNF 356 (1108)
T ss_dssp EETGGGTTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECC
T ss_pred EhhhhhccccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCC
Confidence 999999999999999999999999999999999999875 44666667777766655543
No 34
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.88 E-value=8.4e-24 Score=193.95 Aligned_cols=173 Identities=17% Similarity=0.192 Sum_probs=133.3
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCc----eEEEEEcCcchHHHHHHH--HhCCCeEEEeccHHHHHHHHhCCCccC
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDV----KSMLLVGGVEVKADVKKI--EEEGANLLIGTPGRLYDIMERMDVLDF 74 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i----~~~~~~~g~~~~~~~~~l--~~~~~~ilV~Tp~~l~~~~~~~~~~~l 74 (203)
.+|||+|||+||.|+++.+++++... ++ ++..++||.+..++.... ... ++|+|+||++|.+++.. +
T Consensus 101 ~~lil~PtreLa~Q~~~~l~~l~~~~-~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~-----L 173 (1054)
T 1gku_B 101 RCYVIFPTSLLVIQAAETIRKYAEKA-GVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE-----L 173 (1054)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHHTTT-CCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT-----S
T ss_pred eEEEEeccHHHHHHHHHHHHHHHhhc-CCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH-----h
Confidence 48999999999999999999999877 77 899999998877643322 134 99999999999987653 6
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhC-----------CCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCccc
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRL-----------PKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKS 143 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~-----------~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~ 143 (203)
++++++|+||||+|+++ ...++.++..+ +..+|++++|||+++. ..+...++.++..+.+...
T Consensus 174 ~~l~~lViDEah~~l~~--~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~--- 247 (1054)
T 1gku_B 174 GHFDFIFVDDVDAILKA--SKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSS--- 247 (1054)
T ss_dssp CCCSEEEESCHHHHHTS--THHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCC---
T ss_pred ccCCEEEEeChhhhhhc--cccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCc---
Confidence 69999999999999984 56777777766 3568999999999987 5444444444433434333
Q ss_pred ccccchhhhhccCCCCCceeEEEEEcCCCCcHHHHHHHHhcCCCCeEEEEeccCCcccC
Q 028826 144 HHASASSQQLASSKTPLGLHLEYLECESDKKPSQLVDLLIKNKSKKIIMYVQHGNFSED 202 (203)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~ns~~~~e~ 202 (203)
.....++.+.+. ..+|...|.++++.. .+++||||||++.|++
T Consensus 248 ------------~~~~~~i~~~~~---~~~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~ 290 (1054)
T 1gku_B 248 ------------RITVRNVEDVAV---NDESISTLSSILEKL-GTGGIIYARTGEEAEE 290 (1054)
T ss_dssp ------------EECCCCEEEEEE---SCCCTTTTHHHHTTS-CSCEEEEESSHHHHHH
T ss_pred ------------ccCcCCceEEEe---chhHHHHHHHHHhhc-CCCEEEEEcCHHHHHH
Confidence 334567788776 467788888888876 4689999999987763
No 35
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.87 E-value=7.5e-23 Score=180.27 Aligned_cols=101 Identities=20% Similarity=0.274 Sum_probs=73.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHH-HHHHHhCC------Ccc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMD------VLD 73 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l-~~~~~~~~------~~~ 73 (203)
+|+||+||||||.|+++++.++..++ ++++.+++||.+...+ .+ ..++||+||||++| .++++. + .+.
T Consensus 117 ~vlVltPTreLA~Q~~e~~~~l~~~l-gl~v~~i~GG~~~~~r--~~-~~~~dIvvgTpgrl~fDyLrd-~~~~~~~~~~ 191 (853)
T 2fsf_A 117 GVHVVTVNDYLAQRDAENNRPLFEFL-GLTVGINLPGMPAPAK--RE-AYAADITYGTNNEYGFDYLRD-NMAFSPEERV 191 (853)
T ss_dssp CCEEEESSHHHHHHHHHHHHHHHHHT-TCCEEECCTTCCHHHH--HH-HHHSSEEEEEHHHHHHHHHHH-TTCSSGGGCC
T ss_pred cEEEEcCCHHHHHHHHHHHHHHHHhc-CCeEEEEeCCCCHHHH--HH-hcCCCEEEECCchhhHHHHHh-hhhccHhHhc
Confidence 47999999999999999999999998 8999999999886433 33 23699999999999 788886 3 366
Q ss_pred CCCccEEEEcchhHhh-hh---------------chHHHHHHHHHhCCC
Q 028826 74 FRNLVILVLDEADRLL-DM---------------GFQKQISYIISRLPK 106 (203)
Q Consensus 74 l~~v~~lViDEad~l~-~~---------------~~~~~~~~il~~~~~ 106 (203)
+++++++|+||||.|+ +. ++...+..++..+++
T Consensus 192 ~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~ 240 (853)
T 2fsf_A 192 QRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIR 240 (853)
T ss_dssp CCSCCEEEESCHHHHTTTTTTCEEEEEEC--------------------
T ss_pred ccCCcEEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhchh
Confidence 7999999999999998 53 367888899988874
No 36
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.87 E-value=3.5e-23 Score=182.64 Aligned_cols=115 Identities=17% Similarity=0.219 Sum_probs=97.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHH-HHHHHhC-----CCccC
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERM-----DVLDF 74 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l-~~~~~~~-----~~~~l 74 (203)
+++||+||||||.|+.+++.++..++ ++++.+++||.+...+.. ..++||+||||++| .+++... +.+.+
T Consensus 126 ~vlVltptreLA~qd~e~~~~l~~~l-gl~v~~i~gg~~~~~r~~---~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~l 201 (844)
T 1tf5_A 126 GVHVVTVNEYLASRDAEQMGKIFEFL-GLTVGLNLNSMSKDEKRE---AYAADITYSTNNELGFDYLRDNMVLYKEQMVQ 201 (844)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHT-TCCEEECCTTSCHHHHHH---HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCC
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHhhc-CCeEEEEeCCCCHHHHHH---hcCCCEEEECchhhhHHHHHHhhhcchhhhcc
Confidence 48999999999999999999999998 999999999988654433 24699999999999 6777651 24668
Q ss_pred CCccEEEEcchhHhh-hhc---------------hHHHHHHHHHhCC---------CCCcEE-----------------E
Q 028826 75 RNLVILVLDEADRLL-DMG---------------FQKQISYIISRLP---------KLRRTG-----------------L 112 (203)
Q Consensus 75 ~~v~~lViDEad~l~-~~~---------------~~~~~~~il~~~~---------~~~q~i-----------------~ 112 (203)
+.+.++|+||||.|+ +.+ |...+..++..++ +.+|+. +
T Consensus 202 r~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~L 281 (844)
T 1tf5_A 202 RPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNL 281 (844)
T ss_dssp CCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCT
T ss_pred cCCCEEEECchhhhhhhccccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCcccc
Confidence 899999999999998 653 7889999999997 478888 9
Q ss_pred EeeecCh
Q 028826 113 FSATQTE 119 (203)
Q Consensus 113 ~SAT~~~ 119 (203)
||||++.
T Consensus 282 fsat~~~ 288 (844)
T 1tf5_A 282 FDVKHVA 288 (844)
T ss_dssp TSGGGHH
T ss_pred CCCccch
Confidence 9999874
No 37
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.87 E-value=1.3e-21 Score=169.95 Aligned_cols=180 Identities=18% Similarity=0.139 Sum_probs=129.4
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH-----HhCCCeEEEeccHHHH---HHHHh-CCCc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI-----EEEGANLLIGTPGRLY---DIMER-MDVL 72 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l-----~~~~~~ilV~Tp~~l~---~~~~~-~~~~ 72 (203)
+|||+|+++|+.|+.+.++++ ++++..+.|+....+..... ...+++|+|+||++|. .++.. .+..
T Consensus 87 ~lVisP~~~L~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~ 161 (591)
T 2v1x_A 87 TLVICPLISLMEDQLMVLKQL-----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAY 161 (591)
T ss_dssp EEEECSCHHHHHHHHHHHHHH-----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHH
T ss_pred EEEEeCHHHHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhh
Confidence 799999999999999999887 68888999988766554322 2467999999999884 22221 0245
Q ss_pred cCCCccEEEEcchhHhhhhc--hHHHHHH--HHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccc
Q 028826 73 DFRNLVILVLDEADRLLDMG--FQKQISY--IISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASA 148 (203)
Q Consensus 73 ~l~~v~~lViDEad~l~~~~--~~~~~~~--il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~ 148 (203)
.+.+++++||||||++.+|| |++.+.. .+....+..|++++|||+++.+...+..++..+....+...
T Consensus 162 ~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~-------- 233 (591)
T 2v1x_A 162 EARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTAS-------- 233 (591)
T ss_dssp HTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECC--------
T ss_pred hccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecC--------
Confidence 57899999999999999988 7777654 34444457999999999999988877777765433333222
Q ss_pred hhhhhccCCCCCceeEEEEEcCC--CCcHHHHHHHHhc-CCCCeEEEEeccCCcccC
Q 028826 149 SSQQLASSKTPLGLHLEYLECES--DKKPSQLVDLLIK-NKSKKIIMYVQHGNFSED 202 (203)
Q Consensus 149 ~~~~~~~~~~~~~i~~~~~~~~~--~~k~~~l~~ll~~-~~~~~~lIF~ns~~~~e~ 202 (203)
...+++...+..... .++...+.++++. ...+++||||+|++.|++
T Consensus 234 --------~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~ 282 (591)
T 2v1x_A 234 --------FNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQ 282 (591)
T ss_dssp --------CCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHH
T ss_pred --------CCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHH
Confidence 234555544443322 2356677777764 467899999999988764
No 38
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.87 E-value=3.3e-21 Score=175.83 Aligned_cols=124 Identities=23% Similarity=0.216 Sum_probs=102.4
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
+||++||++|+.|+++.+.++.. +++.++|+... ..+++|+|+||++|..++.. +...+++++++|
T Consensus 132 vL~l~PtkaLa~Q~~~~l~~~~~-----~vglltGd~~~--------~~~~~IvV~Tpe~L~~~L~~-~~~~l~~l~lVV 197 (1010)
T 2xgj_A 132 VIYTSPIKALSNQKYRELLAEFG-----DVGLMTGDITI--------NPDAGCLVMTTEILRSMLYR-GSEVMREVAWVI 197 (1010)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHS-----CEEEECSSCEE--------CTTCSEEEEEHHHHHHHHHH-TCTTGGGEEEEE
T ss_pred EEEECChHHHHHHHHHHHHHHhC-----CEEEEeCCCcc--------CCCCCEEEEcHHHHHHHHHc-CcchhhcCCEEE
Confidence 79999999999999999999863 67778888764 24689999999999999988 778899999999
Q ss_pred EcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHH--HHHHhcCCCCeEEEecc
Q 028826 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE--ELSKAGLRNPVRIEVRA 139 (203)
Q Consensus 82 iDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~--~~~~~~l~~~~~i~~~~ 139 (203)
+||||.+.++++...+..++..++...|++++|||+++... .++......+..+....
T Consensus 198 iDEaH~l~d~~rg~~~e~il~~l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~ 257 (1010)
T 2xgj_A 198 FDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTN 257 (1010)
T ss_dssp EETGGGGGCTTTHHHHHHHHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEEC
T ss_pred EechhhhcccchhHHHHHHHHhcCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecC
Confidence 99999999998888899999999999999999999987532 33333345565555443
No 39
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.85 E-value=8.5e-21 Score=162.85 Aligned_cols=174 Identities=20% Similarity=0.197 Sum_probs=128.2
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHH---HHHHhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~---~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+||++|+++|+.|+.+.++++ ++++..+.|+.+..+.. ..+..++++|+|+||+++...... ..+...+++
T Consensus 68 ~lvi~P~~aL~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~-~~l~~~~~~ 141 (523)
T 1oyw_A 68 TVVVSPLISLMKDQVDQLQAN-----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFL-EHLAHWNPV 141 (523)
T ss_dssp EEEECSCHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHH-HHHTTSCEE
T ss_pred EEEECChHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHH-HHHhhCCCC
Confidence 699999999999999998876 68888888887755443 334457799999999999632222 234557899
Q ss_pred EEEEcchhHhhhhc--hHHHHHH---HHHhCCCCCcEEEEeeecChhHHH-HHHhc-CCCCeEEEeccCcccccccchhh
Q 028826 79 ILVLDEADRLLDMG--FQKQISY---IISRLPKLRRTGLFSATQTEAVEE-LSKAG-LRNPVRIEVRAESKSHHASASSQ 151 (203)
Q Consensus 79 ~lViDEad~l~~~~--~~~~~~~---il~~~~~~~q~i~~SAT~~~~v~~-~~~~~-l~~~~~i~~~~~~~~~~~~~~~~ 151 (203)
++|+||||++.+|| |++.+.. +...+ +..+++++|||.++.+.. +.+.. +.++..+.. ..
T Consensus 142 ~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~----------- 208 (523)
T 1oyw_A 142 LLAVDEAHCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS-SF----------- 208 (523)
T ss_dssp EEEESSGGGGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEEC-CC-----------
T ss_pred EEEEeCccccCcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeC-CC-----------
Confidence 99999999999887 6666544 45555 468999999999998765 33332 345554432 22
Q ss_pred hhccCCCCCceeEEEEEcCCCCcHHHHHHHHhcCCCCeEEEEeccCCcccC
Q 028826 152 QLASSKTPLGLHLEYLECESDKKPSQLVDLLIKNKSKKIIMYVQHGNFSED 202 (203)
Q Consensus 152 ~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~ns~~~~e~ 202 (203)
..+++ .|...+..++...+.+++.....+++||||+|++.||+
T Consensus 209 ------~r~~l--~~~v~~~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~ 251 (523)
T 1oyw_A 209 ------DRPNI--RYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVED 251 (523)
T ss_dssp ------CCTTE--EEEEEECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHH
T ss_pred ------CCCce--EEEEEeCCCHHHHHHHHHHhcCCCcEEEEeCCHHHHHH
Confidence 23344 34445667889999999998888899999999988763
No 40
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.85 E-value=6e-21 Score=174.07 Aligned_cols=113 Identities=26% Similarity=0.276 Sum_probs=97.8
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
+||++||++|+.|+++.++++. +++++..++|+... +..++|+|+||++|..++.. +...+.+++++|
T Consensus 85 vlvl~PtraLa~Q~~~~l~~~~---~~~~v~~l~G~~~~--------~~~~~IlV~Tpe~L~~~l~~-~~~~l~~l~lvV 152 (997)
T 4a4z_A 85 TIYTSPIKALSNQKFRDFKETF---DDVNIGLITGDVQI--------NPDANCLIMTTEILRSMLYR-GADLIRDVEFVI 152 (997)
T ss_dssp EEEEESCGGGHHHHHHHHHTTC-----CCEEEECSSCEE--------CTTSSEEEEEHHHHHHHHHH-TCSGGGGEEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHc---CCCeEEEEeCCCcc--------CCCCCEEEECHHHHHHHHHh-CchhhcCCCEEE
Confidence 7999999999999999998864 26788999998764 35689999999999999988 777889999999
Q ss_pred EcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHh
Q 028826 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (203)
Q Consensus 82 iDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~ 127 (203)
|||||++.++++...+..++..++...|++++|||+++.. ++.++
T Consensus 153 iDEaH~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT~~n~~-ef~~~ 197 (997)
T 4a4z_A 153 FDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTY-EFANW 197 (997)
T ss_dssp ECCTTCCCTTCTTCCHHHHHHHSCTTCEEEEEECCCTTHH-HHHHH
T ss_pred EECcccccccchHHHHHHHHHhcccCCCEEEEcCCCCChH-HHHHH
Confidence 9999999999999999999999999999999999998653 44443
No 41
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.85 E-value=1.1e-21 Score=173.40 Aligned_cols=115 Identities=17% Similarity=0.223 Sum_probs=98.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHH-HHHHHhC-----CCccC
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERM-----DVLDF 74 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l-~~~~~~~-----~~~~l 74 (203)
.++||+||++||.|+.+++..+..++ ++++++++||.+...+.. ..++||+||||++| .++++.. +.+.+
T Consensus 154 ~v~VvTpTreLA~Qdae~m~~l~~~l-GLsv~~i~gg~~~~~r~~---~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~l 229 (922)
T 1nkt_A 154 GVHIVTVNDYLAKRDSEWMGRVHRFL-GLQVGVILATMTPDERRV---AYNADITYGTNNEFGFDYLRDNMAHSLDDLVQ 229 (922)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHT-TCCEEECCTTCCHHHHHH---HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCC
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhc-CCeEEEEeCCCCHHHHHH---hcCCCEEEECchHhhHHHHHhhhhccHhhhcc
Confidence 48999999999999999999999998 899999999988544332 23699999999999 7888761 24668
Q ss_pred CCccEEEEcchhHhh-h---------------hchHHHHHHHHHhCC---------CCCcEE-----------------E
Q 028826 75 RNLVILVLDEADRLL-D---------------MGFQKQISYIISRLP---------KLRRTG-----------------L 112 (203)
Q Consensus 75 ~~v~~lViDEad~l~-~---------------~~~~~~~~~il~~~~---------~~~q~i-----------------~ 112 (203)
+.+.++|+||||.|+ + .+|...+..++..++ +.+|+. +
T Consensus 230 r~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~L 309 (922)
T 1nkt_A 230 RGHHYAIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNL 309 (922)
T ss_dssp CCCCEEEETTHHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSST
T ss_pred CCCCEEEEeChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccc
Confidence 899999999999998 4 358899999999998 788999 9
Q ss_pred EeeecCh
Q 028826 113 FSATQTE 119 (203)
Q Consensus 113 ~SAT~~~ 119 (203)
||||.++
T Consensus 310 fsat~~~ 316 (922)
T 1nkt_A 310 YEAANSP 316 (922)
T ss_dssp TCSTTCC
T ss_pred cCCcchh
Confidence 9999875
No 42
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.83 E-value=2.8e-20 Score=159.71 Aligned_cols=116 Identities=13% Similarity=0.151 Sum_probs=90.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCc-cCCCccE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVL-DFRNLVI 79 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~-~l~~v~~ 79 (203)
.+|||+||++|+.|+++.+++++... ++++..++||.....+...+. .+++|+|+||+++..++.. +.+ .+.++++
T Consensus 57 ~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~-~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~~ 133 (556)
T 4a2p_A 57 KVVFLATKVPVYEQQKNVFKHHFERQ-GYSVQGISGENFSNVSVEKVI-EDSDIIVVTPQILVNSFED-GTLTSLSIFTL 133 (556)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHGGG-TCCEEECCCC-----CHHHHH-HHCSEEEECHHHHHHHHHS-SSCCCSTTCSE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhccc-CceEEEEeCCCCcchhHHHhh-CCCCEEEECHHHHHHHHHh-CcccccccCCE
Confidence 37999999999999999999998877 899999999987766665553 4699999999999999988 667 7999999
Q ss_pred EEEcchhHhhhhchHHHH-HHHHHh-C---CCCCcEEEEeeecCh
Q 028826 80 LVLDEADRLLDMGFQKQI-SYIISR-L---PKLRRTGLFSATQTE 119 (203)
Q Consensus 80 lViDEad~l~~~~~~~~~-~~il~~-~---~~~~q~i~~SAT~~~ 119 (203)
+|+||||++.+++....+ ..++.. + ++..|++++|||++.
T Consensus 134 vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~ 178 (556)
T 4a2p_A 134 MIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGV 178 (556)
T ss_dssp EEEETGGGCSTTSHHHHHHHHHHHHHHCC---CCEEEEEESCCCC
T ss_pred EEEECCcccCCcchHHHHHHHHHHhhhcccCCCCeEEEEeCCccc
Confidence 999999999877643333 233322 2 356899999999953
No 43
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.82 E-value=1.2e-19 Score=161.04 Aligned_cols=171 Identities=16% Similarity=0.169 Sum_probs=127.0
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
++|++|+|+||.|+++.++++... ++++..++|+....... ..+++|+|+||+++..++.. +...+++++++|
T Consensus 71 ~l~i~P~raLa~q~~~~~~~l~~~--g~~v~~~~G~~~~~~~~----~~~~~Iiv~Tpe~l~~~~~~-~~~~l~~~~~vI 143 (720)
T 2zj8_A 71 AVYIVPLKALAEEKFQEFQDWEKI--GLRVAMATGDYDSKDEW----LGKYDIIIATAEKFDSLLRH-GSSWIKDVKILV 143 (720)
T ss_dssp EEEECSSGGGHHHHHHHTGGGGGG--TCCEEEECSCSSCCCGG----GGGCSEEEECHHHHHHHHHH-TCTTGGGEEEEE
T ss_pred EEEEcCcHHHHHHHHHHHHHHHhc--CCEEEEecCCCCccccc----cCCCCEEEECHHHHHHHHHc-ChhhhhcCCEEE
Confidence 799999999999999999877654 79999999986654321 24689999999999999988 666689999999
Q ss_pred EcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCCCc
Q 028826 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLG 161 (203)
Q Consensus 82 iDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (203)
+||+|.+.++++...+..++..+++..|++++|||+++ ...+.+++ ..+ .+.... .+..
T Consensus 144 iDE~H~l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~~l-~~~-~~~~~~------------------rp~~ 202 (720)
T 2zj8_A 144 ADEIHLIGSRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELAEWL-NAE-LIVSDW------------------RPVK 202 (720)
T ss_dssp EETGGGGGCTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHHHT-TEE-EEECCC------------------CSSE
T ss_pred EECCcccCCCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHHHh-CCc-ccCCCC------------------CCCc
Confidence 99999998888899999999988778999999999986 35666544 321 111111 1222
Q ss_pred eeEEEE------EcC-----CCCcHHHHHHHHhcCCCCeEEEEeccCCcccC
Q 028826 162 LHLEYL------ECE-----SDKKPSQLVDLLIKNKSKKIIMYVQHGNFSED 202 (203)
Q Consensus 162 i~~~~~------~~~-----~~~k~~~l~~ll~~~~~~~~lIF~ns~~~~e~ 202 (203)
+...+. ..+ ...+...+.+.++. .+++||||++++.|+.
T Consensus 203 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~LVF~~sr~~~~~ 252 (720)
T 2zj8_A 203 LRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIRK--KKGALIFVNMRRKAER 252 (720)
T ss_dssp EEEEEEETTEEEETTSCEEECSSTTHHHHHHHHT--TCCEEEECSCHHHHHH
T ss_pred ceEEEEeCCeeeccccchhhhhHHHHHHHHHHhC--CCCEEEEecCHHHHHH
Confidence 222211 112 24566777777754 4699999999988763
No 44
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.82 E-value=8e-20 Score=156.65 Aligned_cols=116 Identities=13% Similarity=0.172 Sum_probs=94.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCc-cCCCccE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVL-DFRNLVI 79 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~-~l~~v~~ 79 (203)
.+|||+||++|+.|+++.+++++... ++++..++||.....+...+. .+++|+|+||+++..++.. +.+ .+.++++
T Consensus 54 ~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~-~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~~ 130 (555)
T 3tbk_A 54 KVVFFANQIPVYEQQATVFSRYFERL-GYNIASISGATSDSVSVQHII-EDNDIIILTPQILVNNLNN-GAIPSLSVFTL 130 (555)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHTT-TCCEEEECTTTGGGSCHHHHH-HHCSEEEECHHHHHHHHHT-SSSCCGGGCSE
T ss_pred EEEEEeCCHHHHHHHHHHHHHHhccC-CcEEEEEcCCCcchhhHHHHh-cCCCEEEECHHHHHHHHhc-CcccccccCCE
Confidence 37999999999999999999999877 899999999987666655553 4699999999999999988 666 7899999
Q ss_pred EEEcchhHhhhhc-hHHHHHHHHHhC-----CCCCcEEEEeeecCh
Q 028826 80 LVLDEADRLLDMG-FQKQISYIISRL-----PKLRRTGLFSATQTE 119 (203)
Q Consensus 80 lViDEad~l~~~~-~~~~~~~il~~~-----~~~~q~i~~SAT~~~ 119 (203)
+|+||||++.+.+ +...+...+... ....|++++|||++.
T Consensus 131 vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~ 176 (555)
T 3tbk_A 131 MIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGV 176 (555)
T ss_dssp EEETTGGGCSTTCHHHHHHHHHHHHHTSSCCSCCCEEEEEESCCCC
T ss_pred EEEECccccCCcchHHHHHHHHHHhhhccccCCCCeEEEEecCccc
Confidence 9999999998765 444444444332 256799999999964
No 45
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.81 E-value=2.5e-19 Score=158.60 Aligned_cols=172 Identities=14% Similarity=0.176 Sum_probs=123.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
.++|++|+|+||.|+++.++++.. . ++++..++|+....+.. ..+++|+|+||+++..++.. +...+++++++
T Consensus 70 ~~l~i~P~r~La~q~~~~~~~~~~-~-g~~v~~~~G~~~~~~~~----~~~~~Iiv~Tpe~l~~~l~~-~~~~l~~~~~v 142 (702)
T 2p6r_A 70 KSLYVVPLRALAGEKYESFKKWEK-I-GLRIGISTGDYESRDEH----LGDCDIIVTTSEKADSLIRN-RASWIKAVSCL 142 (702)
T ss_dssp CEEEEESSHHHHHHHHHHHTTTTT-T-TCCEEEECSSCBCCSSC----STTCSEEEEEHHHHHHHHHT-TCSGGGGCCEE
T ss_pred cEEEEeCcHHHHHHHHHHHHHHHh-c-CCEEEEEeCCCCcchhh----ccCCCEEEECHHHHHHHHHc-ChhHHhhcCEE
Confidence 379999999999999999976654 3 79999999987654321 24799999999999999987 65668999999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhC---CCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCC
Q 028826 81 VLDEADRLLDMGFQKQISYIISRL---PKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSK 157 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~---~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 157 (203)
|+||+|.+.++++...+..++..+ ++..|++++|||+++ ...+.+++ ..+. +....
T Consensus 143 IiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~l-~~~~-~~~~~------------------ 201 (702)
T 2p6r_A 143 VVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEWL-DADY-YVSDW------------------ 201 (702)
T ss_dssp EETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHHT-TCEE-EECCC------------------
T ss_pred EEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHHh-CCCc-ccCCC------------------
Confidence 999999998877777777776666 578999999999986 46666644 3221 22111
Q ss_pred CCCceeEEEE------EcCCC-------CcHHHHHHHHhcCCCCeEEEEeccCCcccC
Q 028826 158 TPLGLHLEYL------ECESD-------KKPSQLVDLLIKNKSKKIIMYVQHGNFSED 202 (203)
Q Consensus 158 ~~~~i~~~~~------~~~~~-------~k~~~l~~ll~~~~~~~~lIF~ns~~~~e~ 202 (203)
.+..+...+. ..+.. .+...+.+.++ ..+++||||++++.|++
T Consensus 202 r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~ 257 (702)
T 2p6r_A 202 RPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVA--ENGGVLVFESTRRGAEK 257 (702)
T ss_dssp CSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHH--TTCCEEEECSSHHHHHH
T ss_pred CCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHh--cCCCEEEEcCCHHHHHH
Confidence 1112222111 11111 15566666665 45699999999987763
No 46
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.81 E-value=1e-19 Score=172.86 Aligned_cols=177 Identities=15% Similarity=0.180 Sum_probs=124.6
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCC--ccCCCccE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV--LDFRNLVI 79 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~--~~l~~v~~ 79 (203)
+||++|+|+||+|+++.+++..+.. |++|..++|+.+...+. ..+++|+|+|||++..+++. .. -.++++++
T Consensus 137 ~lyiaP~kALa~e~~~~l~~~~~~~-gi~V~~~tGd~~~~~~~----~~~~~IlVtTpEkld~llr~-~~~~~~l~~v~~ 210 (1724)
T 4f92_B 137 IIYIAPMRSLVQEMVGSFGKRLATY-GITVAELTGDHQLCKEE----ISATQIIVCTPEKWDIITRK-GGERTYTQLVRL 210 (1724)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTT-TCCEEECCSSCSSCCTT----GGGCSEEEECHHHHHHHTTS-STTHHHHTTEEE
T ss_pred EEEECCHHHHHHHHHHHHHHHHhhC-CCEEEEEECCCCCCccc----cCCCCEEEECHHHHHHHHcC-CccchhhcCcCE
Confidence 7999999999999999999887777 89999999987654322 24689999999998777654 22 23789999
Q ss_pred EEEcchhHhhhhchHHHHHHHHH-------hCCCCCcEEEEeeecChhHHHHHHhcCCCCe--EEEeccCcccccccchh
Q 028826 80 LVLDEADRLLDMGFQKQISYIIS-------RLPKLRRTGLFSATQTEAVEELSKAGLRNPV--RIEVRAESKSHHASASS 150 (203)
Q Consensus 80 lViDEad~l~~~~~~~~~~~il~-------~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~--~i~~~~~~~~~~~~~~~ 150 (203)
+|+||+|.+-+ +....++.++. ..++..|++++|||+|+ ..+++++.-.++. ...+..
T Consensus 211 vIiDEvH~l~d-~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~----------- 277 (1724)
T 4f92_B 211 IILDEIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDN----------- 277 (1724)
T ss_dssp EEETTGGGGGS-TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCG-----------
T ss_pred EEEecchhcCC-ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECC-----------
Confidence 99999997644 44444444433 45678999999999985 5677775433321 222222
Q ss_pred hhhccCCCCCceeEEEEEcCCCCcHH---H----HHHHHh-cCCCCeEEEEeccCCcccC
Q 028826 151 QQLASSKTPLGLHLEYLECESDKKPS---Q----LVDLLI-KNKSKKIIMYVQHGNFSED 202 (203)
Q Consensus 151 ~~~~~~~~~~~i~~~~~~~~~~~k~~---~----l~~ll~-~~~~~~~lIF~ns~~~~e~ 202 (203)
...|..+.+.++..+...... . +...+. ....+++||||+||+.|++
T Consensus 278 -----~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~ 332 (1724)
T 4f92_B 278 -----SFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGK 332 (1724)
T ss_dssp -----GGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHH
T ss_pred -----CCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHH
Confidence 235667788777766654322 2 222232 2356799999999999874
No 47
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.81 E-value=2.5e-19 Score=158.83 Aligned_cols=118 Identities=18% Similarity=0.190 Sum_probs=98.2
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
++|++|+|+||.|+.+.++++... ++++...+|+....+.. + .+++|+|+||+++..++.. +...+++++++|
T Consensus 78 il~i~P~r~La~q~~~~~~~~~~~--g~~v~~~~G~~~~~~~~--~--~~~~Iiv~Tpe~l~~~~~~-~~~~l~~~~~vI 150 (715)
T 2va8_A 78 AIYVTPLRALTNEKYLTFKDWELI--GFKVAMTSGDYDTDDAW--L--KNYDIIITTYEKLDSLWRH-RPEWLNEVNYFV 150 (715)
T ss_dssp EEEECSCHHHHHHHHHHHGGGGGG--TCCEEECCSCSSSCCGG--G--GGCSEEEECHHHHHHHHHH-CCGGGGGEEEEE
T ss_pred EEEEeCcHHHHHHHHHHHHHhhcC--CCEEEEEeCCCCCchhh--c--CCCCEEEEcHHHHHHHHhC-ChhHhhccCEEE
Confidence 799999999999999999766543 78999999887654321 2 3689999999999999988 666689999999
Q ss_pred EcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhc
Q 028826 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAG 128 (203)
Q Consensus 82 iDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~ 128 (203)
+||+|.+.+.++...+..++..++ ..|++++|||+++ ...+.+++
T Consensus 151 iDE~H~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~~l 195 (715)
T 2va8_A 151 LDELHYLNDPERGPVVESVTIRAK-RRNLLALSATISN-YKQIAKWL 195 (715)
T ss_dssp ECSGGGGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHHHH
T ss_pred EechhhcCCcccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHHHh
Confidence 999999987788888888888886 8999999999986 35666644
No 48
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.80 E-value=2.8e-20 Score=164.29 Aligned_cols=114 Identities=12% Similarity=0.172 Sum_probs=92.4
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCc-cCCCccEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVL-DFRNLVIL 80 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~-~l~~v~~l 80 (203)
+|||+||++|+.|+.+++++++... ++++..++||.....+...+. .+++|+|+||++|.+++.. +.+ .+++++++
T Consensus 64 ~lvl~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~-~~~~Iiv~Tp~~L~~~l~~-~~~~~l~~~~~v 140 (696)
T 2ykg_A 64 VVFFANQIPVYEQNKSVFSKYFERH-GYRVTGISGATAENVPVEQIV-ENNDIIILTPQILVNNLKK-GTIPSLSIFTLM 140 (696)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECSSSCSSSCHHHHH-HTCSEEEECHHHHHHHHHT-TSSCCGGGCSEE
T ss_pred EEEEECCHHHHHHHHHHHHHHhccC-CceEEEEeCCccccccHHHhc-cCCCEEEECHHHHHHHHhc-CcccccccccEE
Confidence 7999999999999999999998766 899999999987655555553 4699999999999999987 666 79999999
Q ss_pred EEcchhHhhhhc-hHHHHHHHHHh-----CCCCCcEEEEeeecC
Q 028826 81 VLDEADRLLDMG-FQKQISYIISR-----LPKLRRTGLFSATQT 118 (203)
Q Consensus 81 ViDEad~l~~~~-~~~~~~~il~~-----~~~~~q~i~~SAT~~ 118 (203)
|+||||++.+.. +...+...+.. .++..|++++|||..
T Consensus 141 ViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 141 IFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVG 184 (696)
T ss_dssp EEETGGGCSTTCHHHHHHHHHHHHHHTTCCSCCCEEEEEESCCC
T ss_pred EEeCCCcccCcccHHHHHHHHHHHhhcccCCCCCeEEEEeCccc
Confidence 999999987554 33333333332 246789999999987
No 49
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.80 E-value=4.7e-19 Score=168.34 Aligned_cols=177 Identities=17% Similarity=0.248 Sum_probs=122.8
Q ss_pred EEEEcCcHHHHHHHHHHHHH-hhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhC-CCccCCCccE
Q 028826 2 GMIISPTRELSAQIYHVAQP-FISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM-DVLDFRNLVI 79 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~-l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~-~~~~l~~v~~ 79 (203)
|||++|+|+||.|+++.+++ ++... +++++.++|+.+.+.. .+ .+++|+|+|||++..++++. ..-.++++++
T Consensus 975 avyi~P~raLa~q~~~~~~~~f~~~~-g~~V~~ltGd~~~~~~--~~--~~~~IiV~TPEkld~llr~~~~~~~l~~v~l 1049 (1724)
T 4f92_B 975 CVYITPMEALAEQVYMDWYEKFQDRL-NKKVVLLTGETSTDLK--LL--GKGNIIISTPEKWDILSRRWKQRKNVQNINL 1049 (1724)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHTTTS-CCCEEECCSCHHHHHH--HH--HHCSEEEECHHHHHHHHTTTTTCHHHHSCSE
T ss_pred EEEEcChHHHHHHHHHHHHHHhchhc-CCEEEEEECCCCcchh--hc--CCCCEEEECHHHHHHHHhCcccccccceeeE
Confidence 79999999999999999876 44445 8999999888654332 22 35899999999998887651 2234789999
Q ss_pred EEEcchhHhhhhchHHHHHHH-------HHhCCCCCcEEEEeeecChhHHHHHHhcCCCC-eEEEeccCcccccccchhh
Q 028826 80 LVLDEADRLLDMGFQKQISYI-------ISRLPKLRRTGLFSATQTEAVEELSKAGLRNP-VRIEVRAESKSHHASASSQ 151 (203)
Q Consensus 80 lViDEad~l~~~~~~~~~~~i-------l~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~-~~i~~~~~~~~~~~~~~~~ 151 (203)
+|+||+|.+.+. ....+..+ ....++..|++++|||+++ ..+++++.-.++ ....+...
T Consensus 1050 vViDE~H~l~d~-rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~----------- 1116 (1724)
T 4f92_B 1050 FVVDEVHLIGGE-NGPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPN----------- 1116 (1724)
T ss_dssp EEECCGGGGGST-THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGG-----------
T ss_pred EEeechhhcCCC-CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCC-----------
Confidence 999999988653 34444333 3445778999999999986 477777654433 22223332
Q ss_pred hhccCCCCCceeEEEEEcCCCCcHHH-------HHHHHh-cCCCCeEEEEeccCCccc
Q 028826 152 QLASSKTPLGLHLEYLECESDKKPSQ-------LVDLLI-KNKSKKIIMYVQHGNFSE 201 (203)
Q Consensus 152 ~~~~~~~~~~i~~~~~~~~~~~k~~~-------l~~ll~-~~~~~~~lIF~ns~~~~e 201 (203)
..|..+++++...+....... +...+. ....+++||||+|++.|+
T Consensus 1117 -----~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~ 1169 (1724)
T 4f92_B 1117 -----VRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTR 1169 (1724)
T ss_dssp -----GCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHH
T ss_pred -----CCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHH
Confidence 345667776666555443322 233333 346779999999998876
No 50
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.80 E-value=3.5e-19 Score=159.73 Aligned_cols=115 Identities=13% Similarity=0.171 Sum_probs=90.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCc-cCCCccE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVL-DFRNLVI 79 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~-~l~~v~~ 79 (203)
.+|||+||++|+.|+++.+++++... ++++..++||.....+...+ ..+++|+|+||++|..++.. +.+ .++++++
T Consensus 298 ~~Lvl~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~-~~~~~Ivv~Tp~~l~~~l~~-~~~~~~~~~~~ 374 (797)
T 4a2q_A 298 KVVFLATKVPVYEQQKNVFKHHFERQ-GYSVQGISGENFSNVSVEKV-IEDSDIIVVTPQILVNSFED-GTLTSLSIFTL 374 (797)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHGGG-TCCEEEECCC-----CHHHH-HHTCSEEEECHHHHHHHHHS-SSCCCGGGCSE
T ss_pred eEEEEeCCHHHHHHHHHHHHHhcccC-CceEEEEeCCcchhhhHHHh-hCCCCEEEEchHHHHHHHHh-ccccccccCCE
Confidence 37999999999999999999998877 89999999998777666655 35799999999999999987 666 7899999
Q ss_pred EEEcchhHhhhhc-hHHHHHHHHHhC----CCCCcEEEEeeecC
Q 028826 80 LVLDEADRLLDMG-FQKQISYIISRL----PKLRRTGLFSATQT 118 (203)
Q Consensus 80 lViDEad~l~~~~-~~~~~~~il~~~----~~~~q~i~~SAT~~ 118 (203)
+|+||||++...+ +...+..++... .+.+|++++|||.+
T Consensus 375 iViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~lSATp~ 418 (797)
T 4a2q_A 375 MIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVG 418 (797)
T ss_dssp EEETTGGGCSTTSHHHHHHHHHHHHHHTTCCCCCEEEEEESCCC
T ss_pred EEEECccccCCCccHHHHHHHHHHHhhccCCCCCeEEEEcCCcc
Confidence 9999999998664 333333443331 46689999999985
No 51
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.79 E-value=2e-18 Score=144.94 Aligned_cols=115 Identities=18% Similarity=0.200 Sum_probs=93.4
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
+||++||++|+.|+.++++++... ++.++..++|+....+..... .+++|+|+||+.+...+.. +.+.+.+++++|
T Consensus 55 ~liv~P~~~L~~q~~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~--~~~~ivv~T~~~l~~~~~~-~~~~~~~~~~vI 130 (494)
T 1wp9_A 55 VLMLAPTKPLVLQHAESFRRLFNL-PPEKIVALTGEKSPEERSKAW--ARAKVIVATPQTIENDLLA-GRISLEDVSLIV 130 (494)
T ss_dssp EEEECSSHHHHHHHHHHHHHHBCS-CGGGEEEECSCSCHHHHHHHH--HHCSEEEECHHHHHHHHHT-TSCCTTSCSEEE
T ss_pred EEEEECCHHHHHHHHHHHHHHhCc-chhheEEeeCCcchhhhhhhc--cCCCEEEecHHHHHHHHhc-CCcchhhceEEE
Confidence 799999999999999999998632 356889999888766544333 3589999999999998887 778899999999
Q ss_pred EcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChh
Q 028826 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120 (203)
Q Consensus 82 iDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~ 120 (203)
+||||.+.+......+...+....+..+++++|||.+..
T Consensus 131 iDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~~~ 169 (494)
T 1wp9_A 131 FDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGST 169 (494)
T ss_dssp EETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSCSS
T ss_pred EECCcccCCCCcHHHHHHHHHhcCCCCeEEEEecCCCCC
Confidence 999999986554455555555566789999999999854
No 52
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.76 E-value=2.6e-18 Score=156.22 Aligned_cols=114 Identities=13% Similarity=0.176 Sum_probs=90.0
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCc-cCCCccEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVL-DFRNLVIL 80 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~-~l~~v~~l 80 (203)
+|||+||++|+.|++++++++++.. ++++..++||.....+...+. .+++|+|+||++|.+++.. +.+ .+++++++
T Consensus 299 vLvl~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~~G~~~~~~~~~~~~-~~~~IvI~Tp~~L~~~l~~-~~~~~l~~~~li 375 (936)
T 4a2w_A 299 VVFLATKVPVYEQQKNVFKHHFERQ-GYSVQGISGENFSNVSVEKVI-EDSDIIVVTPQILVNSFED-GTLTSLSIFTLM 375 (936)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHTT-TCCEEEECCC-----CCHHHH-HHCSEEEECHHHHHHHHHS-SSCCCGGGCSEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHhccc-CceEEEEECCcchhhHHHHhc-cCCCEEEecHHHHHHHHHc-CccccccCCCEE
Confidence 7999999999999999999998877 899999999987666555553 4689999999999999987 666 78999999
Q ss_pred EEcchhHhhhhc-hHHHHHHHHHhC----CCCCcEEEEeeecC
Q 028826 81 VLDEADRLLDMG-FQKQISYIISRL----PKLRRTGLFSATQT 118 (203)
Q Consensus 81 ViDEad~l~~~~-~~~~~~~il~~~----~~~~q~i~~SAT~~ 118 (203)
|+||||++...+ +...+..++... .+..|++++|||.+
T Consensus 376 ViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~LSATp~ 418 (936)
T 4a2w_A 376 IFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVG 418 (936)
T ss_dssp EEETGGGCSTTCHHHHHHHHHHHHHHTTCSCCCEEEEEESCCC
T ss_pred EEECccccCCCccHHHHHHHHHHHhhccCCCcCeEEEecCCcc
Confidence 999999998664 444444444332 45689999999995
No 53
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.75 E-value=8.2e-18 Score=155.44 Aligned_cols=170 Identities=17% Similarity=0.187 Sum_probs=120.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHH---HHHHhCCCeEEEeccHHHHHHHHhCCCccCCCc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~---~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v 77 (203)
+++|++||++||.|+++.+++..... ++++..++|+.+..+.. ..+..+.++|+||||+.+. +.+.++++
T Consensus 654 ~vlvlvPt~~La~Q~~~~~~~~~~~~-~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~------~~~~~~~l 726 (1151)
T 2eyq_A 654 QVAVLVPTTLLAQQHYDNFRDRFANW-PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ------SDVKFKDL 726 (1151)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHSTTT-TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH------SCCCCSSE
T ss_pred eEEEEechHHHHHHHHHHHHHHhhcC-CCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh------CCcccccc
Confidence 47999999999999999999887766 78998888876654433 3444557999999997652 46788999
Q ss_pred cEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCC
Q 028826 78 VILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSK 157 (203)
Q Consensus 78 ~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 157 (203)
+++|+||+|++ + ......+..++...|++++|||.++....+....+.++..+.....
T Consensus 727 ~lvIiDEaH~~---g--~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~----------------- 784 (1151)
T 2eyq_A 727 GLLIVDEEHRF---G--VRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA----------------- 784 (1151)
T ss_dssp EEEEEESGGGS---C--HHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCC-----------------
T ss_pred ceEEEechHhc---C--hHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCC-----------------
Confidence 99999999995 2 2334556666678999999999988888877777766554433222
Q ss_pred CCCceeEEEEEcCCCCcHHHHHHHHhc-CCCCeEEEEeccCCcccC
Q 028826 158 TPLGLHLEYLECESDKKPSQLVDLLIK-NKSKKIIMYVQHGNFSED 202 (203)
Q Consensus 158 ~~~~i~~~~~~~~~~~k~~~l~~ll~~-~~~~~~lIF~ns~~~~e~ 202 (203)
....+..++...+ +......+++. ..+++++||||+++.+++
T Consensus 785 ~r~~i~~~~~~~~---~~~i~~~il~~l~~g~qvlvf~~~v~~~~~ 827 (1151)
T 2eyq_A 785 RRLAVKTFVREYD---SMVVREAILREILRGGQVYYLYNDVENIQK 827 (1151)
T ss_dssp BCBCEEEEEEECC---HHHHHHHHHHHHTTTCEEEEECCCSSCHHH
T ss_pred CccccEEEEecCC---HHHHHHHHHHHHhcCCeEEEEECCHHHHHH
Confidence 1223444443322 22333333332 356799999999988763
No 54
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.74 E-value=6.7e-18 Score=147.23 Aligned_cols=103 Identities=14% Similarity=0.094 Sum_probs=85.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
++||++||||||.|+.+.+.+.. +.++...+|+.. ...+++|+|+||++| +.. +.+++++++++
T Consensus 259 ~vLVl~PTReLA~Qia~~l~~~~----g~~vg~~vG~~~--------~~~~~~IlV~TPGrL---l~~-~~l~l~~l~~l 322 (666)
T 3o8b_A 259 KVLVLNPSVAATLGFGAYMSKAH----GIDPNIRTGVRT--------ITTGAPVTYSTYGKF---LAD-GGCSGGAYDII 322 (666)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHH----SCCCEEECSSCE--------ECCCCSEEEEEHHHH---HHT-TSCCTTSCSEE
T ss_pred eEEEEcchHHHHHHHHHHHHHHh----CCCeeEEECcEe--------ccCCCCEEEECcHHH---HhC-CCcccCcccEE
Confidence 48999999999999988776554 455667777755 256899999999997 445 77889999999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCCCCCc--EEEEeeecChh
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLPKLRR--TGLFSATQTEA 120 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~~~~q--~i~~SAT~~~~ 120 (203)
|+|||| +++.++...+..+++.++..+| .+++|||+++.
T Consensus 323 VlDEAH-~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~~ 363 (666)
T 3o8b_A 323 ICDECH-STDSTTILGIGTVLDQAETAGARLVVLATATPPGS 363 (666)
T ss_dssp EETTTT-CCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTTC
T ss_pred EEccch-hcCccHHHHHHHHHHhhhhcCCceEEEECCCCCcc
Confidence 999995 5688899999999999988777 67779999974
No 55
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.69 E-value=1.1e-16 Score=142.45 Aligned_cols=168 Identities=15% Similarity=0.197 Sum_probs=109.3
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHH---HHHHhCCCeEEEeccHHHHHHHHhCCCccCCCc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~---~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v 77 (203)
+++|++||++||.|+++.++++.... ++++..++||.+..+.. ..+..+.++|+||||+.+.+ .+.++++
T Consensus 419 qvlvlaPtr~La~Q~~~~l~~~~~~~-gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~~~~~~l 491 (780)
T 1gm5_A 419 QTAFMVPTSILAIQHYRRTVESFSKF-NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE------DVHFKNL 491 (780)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHTCS-SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH------CCCCSCC
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhhhc-CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh------hhhccCC
Confidence 58999999999999999999998877 89999999998766543 34444569999999987742 4678999
Q ss_pred cEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCC
Q 028826 78 VILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSK 157 (203)
Q Consensus 78 ~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 157 (203)
+++|+||+|++ |+.. +..+......+|++++|||.++....+.. ..+.....+... ..
T Consensus 492 ~lVVIDEaHr~---g~~q--r~~l~~~~~~~~vL~mSATp~p~tl~~~~--~g~~~~s~i~~~---------------p~ 549 (780)
T 1gm5_A 492 GLVIIDEQHRF---GVKQ--REALMNKGKMVDTLVMSATPIPRSMALAF--YGDLDVTVIDEM---------------PP 549 (780)
T ss_dssp CEEEEESCCCC----------CCCCSSSSCCCEEEEESSCCCHHHHHHH--TCCSSCEEECCC---------------CS
T ss_pred ceEEecccchh---hHHH--HHHHHHhCCCCCEEEEeCCCCHHHHHHHH--hCCcceeeeecc---------------CC
Confidence 99999999986 2211 12223334578999999998876555443 222211112111 00
Q ss_pred CCCceeEEEEEcCCCCcHHHHHHHHhc--CCCCeEEEEeccCCcc
Q 028826 158 TPLGLHLEYLECESDKKPSQLVDLLIK--NKSKKIIMYVQHGNFS 200 (203)
Q Consensus 158 ~~~~i~~~~~~~~~~~k~~~l~~ll~~--~~~~~~lIF~ns~~~~ 200 (203)
....+...+ ....+...+...+.. ..+++++|||++.+.+
T Consensus 550 ~r~~i~~~~---~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~s 591 (780)
T 1gm5_A 550 GRKEVQTML---VPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEES 591 (780)
T ss_dssp SCCCCEECC---CCSSTHHHHHHHHHHHTTTSCCBCCBCCCC---
T ss_pred CCcceEEEE---eccchHHHHHHHHHHHHhcCCcEEEEecchhhh
Confidence 112233222 233445555566643 3567899999987543
No 56
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.69 E-value=2.8e-18 Score=151.56 Aligned_cols=114 Identities=14% Similarity=0.224 Sum_probs=84.4
Q ss_pred EEEEcCcHHHHHHH-HHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHH------HhCCCccC
Q 028826 2 GMIISPTRELSAQI-YHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIM------ERMDVLDF 74 (203)
Q Consensus 2 alil~PtreLa~Qi-~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~------~~~~~~~l 74 (203)
+|||+||++|+.|+ .+++++++.. ++++..++|+....++...+ ..+++|+|+||++|..++ .. +.+.+
T Consensus 59 vlvl~P~~~L~~Q~~~~~l~~~~~~--~~~v~~~~g~~~~~~~~~~~-~~~~~Ilv~Tp~~L~~~l~~~~~~~~-~~~~~ 134 (699)
T 4gl2_A 59 VIVLVNKVLLVEQLFRKEFQPFLKK--WYRVIGLSGDTQLKISFPEV-VKSCDIIISTAQILENSLLNLENGED-AGVQL 134 (699)
T ss_dssp BCCEESCSHHHHHHHHHTHHHHHTT--TSCEEEEC----CCCCHHHH-HHSCSEEEEEHHHHHHHTC---------CCCG
T ss_pred EEEEECCHHHHHHHHHHHHHHHcCc--CceEEEEeCCcchhhHHHhh-hcCCCEEEECHHHHHHHHhccccccc-cceec
Confidence 68999999999999 9999999765 58999999998766555555 357999999999999888 33 56788
Q ss_pred CCccEEEEcchhHhhhhc-hHHHHHHHHHhC-------------CCCCcEEEEeeecCh
Q 028826 75 RNLVILVLDEADRLLDMG-FQKQISYIISRL-------------PKLRRTGLFSATQTE 119 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~-~~~~~~~il~~~-------------~~~~q~i~~SAT~~~ 119 (203)
.+++++|+||||++...+ +...+..++... .+.+|++++|||.+.
T Consensus 135 ~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~ 193 (699)
T 4gl2_A 135 SDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGV 193 (699)
T ss_dssp GGCSEEEEESGGGCBTTBSSCSHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCC
T ss_pred ccCcEEEEECccccCccchHHHHHHHHHHhhhcccccccccccCCCCCEEEEecccccc
Confidence 999999999999986543 333333332221 156899999999986
No 57
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.67 E-value=6.1e-16 Score=119.61 Aligned_cols=119 Identities=16% Similarity=0.177 Sum_probs=88.2
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
+++++|+++|+.|+.+.+.+......+..++.-...... ....+++|+|+||+++.+++.. .+++++++|
T Consensus 112 ~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~------~~~~~~~Ivv~Tpg~l~~~l~~----~l~~~~~lV 181 (235)
T 3llm_A 112 IVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESI------LPRPHASIMFCTVGVLLRKLEA----GIRGISHVI 181 (235)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEE------CCCSSSEEEEEEHHHHHHHHHH----CCTTCCEEE
T ss_pred EEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhc------cCCCCCeEEEECHHHHHHHHHh----hhcCCcEEE
Confidence 688999999999998888765443224444433322211 0124689999999999999876 489999999
Q ss_pred EcchhHh-hhhchH-HHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCe
Q 028826 82 LDEADRL-LDMGFQ-KQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPV 133 (203)
Q Consensus 82 iDEad~l-~~~~~~-~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~ 133 (203)
+||||.+ ++.++. ..++.++... +..|++++|||++.+. +.+.+...|+
T Consensus 182 lDEah~~~~~~~~~~~~l~~i~~~~-~~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 182 VDEIHERDINTDFLLVVLRDVVQAY-PEVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp ECCTTSCCHHHHHHHHHHHHHHHHC-TTSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred EECCccCCcchHHHHHHHHHHHhhC-CCCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 9999996 777776 5677777776 4799999999999876 6665555554
No 58
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.66 E-value=1.1e-16 Score=121.41 Aligned_cols=113 Identities=14% Similarity=0.217 Sum_probs=77.8
Q ss_pred CEEEEcCcHHHHHH-HHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCC-----CccC
Q 028826 1 MGMIISPTRELSAQ-IYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMD-----VLDF 74 (203)
Q Consensus 1 ~alil~PtreLa~Q-i~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~-----~~~l 74 (203)
.+||++||++|+.| +.+.++++... ++++..+.|+.........+. .+++|+|+||+++..++.... ...+
T Consensus 84 ~~lil~p~~~L~~q~~~~~~~~~~~~--~~~v~~~~g~~~~~~~~~~~~-~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~ 160 (216)
T 3b6e_A 84 KVIVLVNKVLLVEQLFRKEFQPFLKK--WYRVIGLSGDTQLKISFPEVV-KSCDIIISTAQILENSLLNLENGEDAGVQL 160 (216)
T ss_dssp CEEEEESSHHHHHHHHHHTHHHHHTT--TSCEEECCC---CCCCHHHHH-HHCSEEEEEHHHHHHHHHC-------CCCG
T ss_pred cEEEEECHHHHHHHHHHHHHHHHhcc--CceEEEEeCCcccchhHHhhc-cCCCEEEECHHHHHHHHhccCcccccccch
Confidence 37999999999999 88889998765 688888888876554444442 368999999999999887621 1668
Q ss_pred CCccEEEEcchhHhhhhchHHHH-HHHHHhC-------------CCCCcEEEEeee
Q 028826 75 RNLVILVLDEADRLLDMGFQKQI-SYIISRL-------------PKLRRTGLFSAT 116 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~-~~il~~~-------------~~~~q~i~~SAT 116 (203)
.+++++|+||||.+.+.++...+ ..++... .+..+++++|||
T Consensus 161 ~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 161 SDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp GGCSEEEETTC-------CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred hcccEEEEECchhhccCCcHHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 89999999999999876654444 3333222 157899999998
No 59
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.63 E-value=5.4e-17 Score=137.30 Aligned_cols=94 Identities=20% Similarity=0.147 Sum_probs=75.7
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCce-EEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVK-SMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVI 79 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~-~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~ 79 (203)
.+|||+||++|+.|+.+.++++ +++ +..+.|+.. ..++|+|+||+.+...+.. ...++++
T Consensus 135 ~~Lvl~P~~~L~~Q~~~~~~~~-----~~~~v~~~~g~~~----------~~~~Ivv~T~~~l~~~~~~----~~~~~~l 195 (472)
T 2fwr_A 135 PTLIVVPTLALAEQWKERLGIF-----GEEYVGEFSGRIK----------ELKPLTVSTYDSAYVNAEK----LGNRFML 195 (472)
T ss_dssp CEEEEESSHHHHHHHHHHGGGG-----CGGGEEEBSSSCB----------CCCSEEEEEHHHHHHTHHH----HTTTCSE
T ss_pred CEEEEECCHHHHHHHHHHHHhC-----CCcceEEECCCcC----------CcCCEEEEEcHHHHHHHHH----hcCCCCE
Confidence 4799999999999999999885 677 777777754 3579999999999876653 1245899
Q ss_pred EEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecC
Q 028826 80 LVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (203)
Q Consensus 80 lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~ 118 (203)
+|+||+|.+.+.+|.. ++..+ +..+++++|||.+
T Consensus 196 iIvDEaH~~~~~~~~~----~~~~~-~~~~~l~lSATp~ 229 (472)
T 2fwr_A 196 LIFDEVHHLPAESYVQ----IAQMS-IAPFRLGLTATFE 229 (472)
T ss_dssp EEEETGGGTTSTTTHH----HHHTC-CCSEEEEEESCCC
T ss_pred EEEECCcCCCChHHHH----HHHhc-CCCeEEEEecCcc
Confidence 9999999998877754 45555 5789999999997
No 60
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.60 E-value=1.1e-14 Score=129.93 Aligned_cols=170 Identities=14% Similarity=0.110 Sum_probs=110.3
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
++|++|+|+|+.|+.+.+.+......+..++.-...... .....+|+++||+++...+.. ...+.+++++|
T Consensus 143 ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~-------~~~~~~I~v~T~G~l~r~l~~--~~~l~~~~~lI 213 (773)
T 2xau_A 143 VACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENK-------TSNKTILKYMTDGMLLREAME--DHDLSRYSCII 213 (773)
T ss_dssp EEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEE-------CCTTCSEEEEEHHHHHHHHHH--STTCTTEEEEE
T ss_pred EEecCchHHHHHHHHHHHHHHhCCchhheecceeccccc-------cCCCCCEEEECHHHHHHHHhh--CccccCCCEEE
Confidence 688999999999998766543321112222221111111 124689999999999987766 35689999999
Q ss_pred EcchhH-hhhhc-hHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCC
Q 028826 82 LDEADR-LLDMG-FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTP 159 (203)
Q Consensus 82 iDEad~-l~~~~-~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (203)
+||+|. .++.. ....+..+.... +..|++++|||++. ..+.+ ++.+...+.+... .
T Consensus 214 lDEah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~--~~l~~-~~~~~~vi~v~gr------------------~ 271 (773)
T 2xau_A 214 LDEAHERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDA--EKFQR-YFNDAPLLAVPGR------------------T 271 (773)
T ss_dssp ECSGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCC--HHHHH-HTTSCCEEECCCC------------------C
T ss_pred ecCccccccchHHHHHHHHHHHHhC-CCceEEEEeccccH--HHHHH-HhcCCCcccccCc------------------c
Confidence 999996 56543 344455555554 57899999999974 44554 4454444544332 2
Q ss_pred CceeEEEEEcCCCCcHHH----HHHHHhcCCCCeEEEEeccCCcccC
Q 028826 160 LGLHLEYLECESDKKPSQ----LVDLLIKNKSKKIIMYVQHGNFSED 202 (203)
Q Consensus 160 ~~i~~~~~~~~~~~k~~~----l~~ll~~~~~~~~lIF~ns~~~~e~ 202 (203)
..+.++|...+..++... +.++......+++|||||+++.+++
T Consensus 272 ~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~ 318 (773)
T 2xau_A 272 YPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIED 318 (773)
T ss_dssp CCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHH
T ss_pred cceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHH
Confidence 346777766555555433 3344445567899999999987763
No 61
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.59 E-value=8.6e-17 Score=135.27 Aligned_cols=99 Identities=21% Similarity=0.277 Sum_probs=66.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeE-EEeccHHHHHHHHh-------CCCc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANL-LIGTPGRLYDIMER-------MDVL 72 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~i-lV~Tp~~l~~~~~~-------~~~~ 72 (203)
+++|++||++||.|+++.++.+ ++. . .++ .+ .|+||+++.+++.. ....
T Consensus 39 ~~lil~Ptr~La~Q~~~~l~~~-----~v~--~-~~~---------------~~~~v~Tp~~l~~~l~~~~l~~~~~~~~ 95 (440)
T 1yks_A 39 RTLVLAPTRVVLSEMKEAFHGL-----DVK--F-HTQ---------------AFSAHGSGREVIDAMCHATLTYRMLEPT 95 (440)
T ss_dssp CEEEEESSHHHHHHHHHHTTTS-----CEE--E-ESS---------------CCCCCCCSSCCEEEEEHHHHHHHHTSSS
T ss_pred eEEEEcchHHHHHHHHHHHhcC-----CeE--E-ecc---------------cceeccCCccceeeecccchhHhhhCcc
Confidence 4899999999999999888754 222 1 111 11 48888877644432 0223
Q ss_pred cCCCccEEEEcchhHhhhhchHHHHHHHHHhC-CCCCcEEEEeeecChhHHH
Q 028826 73 DFRNLVILVLDEADRLLDMGFQKQISYIISRL-PKLRRTGLFSATQTEAVEE 123 (203)
Q Consensus 73 ~l~~v~~lViDEad~l~~~~~~~~~~~il~~~-~~~~q~i~~SAT~~~~v~~ 123 (203)
.+++++++|+||+|++ +.++...+..+.... +..+|++++|||+++.+..
T Consensus 96 ~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~ 146 (440)
T 1yks_A 96 RVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATPPGTSDE 146 (440)
T ss_dssp CCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCS
T ss_pred cccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCCCchhhh
Confidence 4899999999999998 444443433333333 3679999999999887543
No 62
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.58 E-value=1.5e-15 Score=129.49 Aligned_cols=107 Identities=21% Similarity=0.151 Sum_probs=87.7
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
+|||+||++|+.|+++.+++++... +.++..+.||.+..++ ...+++|+|+||+.+.. . ....+++++++|
T Consensus 160 vlvl~P~~~L~~Q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~----~~~~~~I~i~T~~~l~~---~-~~~~~~~~~liI 230 (510)
T 2oca_A 160 ILIIVPTTALTTQMADDFVDYRLFS-HAMIKKIGGGASKDDK----YKNDAPVVVGTWQTVVK---Q-PKEWFSQFGMMM 230 (510)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTSSC-GGGEEECGGGCCTTGG----GCTTCSEEEEEHHHHTT---S-CGGGGGGEEEEE
T ss_pred EEEEECcHHHHHHHHHHHHHhhcCC-ccceEEEecCCccccc----cccCCcEEEEeHHHHhh---c-hhhhhhcCCEEE
Confidence 7999999999999999999985543 6889999998776544 24679999999997643 2 345678999999
Q ss_pred EcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhH
Q 028826 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121 (203)
Q Consensus 82 iDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v 121 (203)
+||+|++.. ..+..++..+++..+++++|||.++..
T Consensus 231 iDE~H~~~~----~~~~~il~~~~~~~~~l~lSATp~~~~ 266 (510)
T 2oca_A 231 NDECHLATG----KSISSIISGLNNCMFKFGLSGSLRDGK 266 (510)
T ss_dssp EETGGGCCH----HHHHHHGGGCTTCCEEEEEESCGGGCS
T ss_pred EECCcCCCc----ccHHHHHHhcccCcEEEEEEeCCCCCc
Confidence 999999855 456778888888899999999997764
No 63
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.58 E-value=4.5e-16 Score=135.76 Aligned_cols=107 Identities=17% Similarity=0.137 Sum_probs=76.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
.+||++||||||.|+++.++.+ .+. +.++. .. .....+-.+-+.|.+.+...+.. ...+++++++
T Consensus 217 ~vLvl~PtreLa~Qi~~~l~~~-------~v~-~~~~~-l~----~~~tp~~~i~~~t~~~l~~~l~~--~~~l~~~~~i 281 (618)
T 2whx_A 217 RTLILAPTRVVAAEMEEALRGL-------PIR-YQTPA-VK----SDHTGREIVDLMCHATFTTRLLS--STRVPNYNLI 281 (618)
T ss_dssp CEEEEESSHHHHHHHHHHTTTS-------CEE-ECCTT-SS----CCCCSSSCEEEEEHHHHHHHHHH--CSSCCCCSEE
T ss_pred eEEEEcChHHHHHHHHHHhcCC-------cee-Eeccc-ce----eccCCCceEEEEChHHHHHHHhc--cccccCCeEE
Confidence 4899999999999999877632 222 22211 00 00122345666777777765554 3568999999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCC-CCCcEEEEeeecChhHHH
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSATQTEAVEE 123 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~-~~~q~i~~SAT~~~~v~~ 123 (203)
|+||||.+ +.++...+..++..++ ..+|+++||||++..+..
T Consensus 282 ViDEah~~-~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~ 324 (618)
T 2whx_A 282 VMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDP 324 (618)
T ss_dssp EEESTTCC-SHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCS
T ss_pred EEECCCCC-CccHHHHHHHHHHHhcccCccEEEEECCCchhhhh
Confidence 99999998 7778888888887775 689999999999987553
No 64
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.56 E-value=2.6e-15 Score=119.00 Aligned_cols=108 Identities=20% Similarity=0.139 Sum_probs=85.6
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
+||++||++|+.|+++.++++.... +.++..+.||...... .....+|+|+||+++... ....+.+++++|
T Consensus 160 ~lil~Pt~~L~~q~~~~l~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~I~v~T~~~l~~~----~~~~~~~~~~vI 230 (282)
T 1rif_A 160 ILIIVPTTALTTQMADDFVDYRLFS-HAMIKKIGGGASKDDK----YKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMM 230 (282)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTSCC-GGGEEECSTTCSSTTC----CCTTCSEEEECHHHHTTS----CGGGGGGEEEEE
T ss_pred EEEEECCHHHHHHHHHHHHHhcccc-cceEEEEeCCCcchhh----hccCCcEEEEchHHHHhh----HHHHHhhCCEEE
Confidence 7999999999999999999986544 6788888888654321 125689999999886432 334578899999
Q ss_pred EcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHH
Q 028826 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE 122 (203)
Q Consensus 82 iDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~ 122 (203)
+||||++.+ +.+..++..+.+..|++++|||.++...
T Consensus 231 iDEaH~~~~----~~~~~il~~~~~~~~~l~lSATp~~~~~ 267 (282)
T 1rif_A 231 NDECHLATG----KSISSIISGLNNCMFKFGLSGSLRDGKA 267 (282)
T ss_dssp EETGGGCCH----HHHHHHTTTCTTCCEEEEECSSCCTTST
T ss_pred EECCccCCc----ccHHHHHHHhhcCCeEEEEeCCCCCcch
Confidence 999999964 3677788888789999999999987643
No 65
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.56 E-value=2.5e-15 Score=126.70 Aligned_cols=106 Identities=15% Similarity=0.093 Sum_probs=73.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
.+||++|||+||.|+++.+.. +.+..-.+.... ....+..+.++||+.+...+.. ...+++++++
T Consensus 50 ~~lvl~Ptr~La~Q~~~~l~g-------~~v~~~~~~~~~------~~~~~~~i~~~t~~~l~~~l~~--~~~l~~~~~i 114 (451)
T 2jlq_A 50 RTLILAPTRVVAAEMEEALRG-------LPIRYQTPAVKS------DHTGREIVDLMCHATFTTRLLS--STRVPNYNLI 114 (451)
T ss_dssp CEEEEESSHHHHHHHHHHTTT-------SCEEECCTTCSC------CCCSSCCEEEEEHHHHHHHHHH--CSCCCCCSEE
T ss_pred cEEEECCCHHHHHHHHHHhcC-------ceeeeeeccccc------cCCCCceEEEEChHHHHHHhhC--cccccCCCEE
Confidence 479999999999999987742 333221211111 0124567999999999888776 3668899999
Q ss_pred EEcchhHhhhhchHHHHHHHHH-hCCCCCcEEEEeeecChhHH
Q 028826 81 VLDEADRLLDMGFQKQISYIIS-RLPKLRRTGLFSATQTEAVE 122 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~-~~~~~~q~i~~SAT~~~~v~ 122 (203)
|+||||.+ +.++...+..+.. ..++..|++++|||+|+.+.
T Consensus 115 ViDEah~~-~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~ 156 (451)
T 2jlq_A 115 VMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTD 156 (451)
T ss_dssp EEETTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCC
T ss_pred EEeCCccC-CcchHHHHHHHHHhhcCCCceEEEEccCCCccch
Confidence 99999977 4444433333332 23467999999999987543
No 66
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.51 E-value=3.5e-14 Score=119.08 Aligned_cols=104 Identities=16% Similarity=0.164 Sum_probs=69.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
+++|++||++||.|+++.+. ++.+....|+... ....+..+.+.|.+.+...+.. ...+++++++
T Consensus 33 ~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~~~~------~~~~~~~~~~~~~~~l~~~l~~--~~~~~~l~~v 97 (431)
T 2v6i_A 33 RTVILAPTRVVASEMYEALR-------GEPIRYMTPAVQS------ERTGNEIVDFMCHSTFTMKLLQ--GVRVPNYNLY 97 (431)
T ss_dssp CEEEEESSHHHHHHHHHHTT-------TSCEEEC---------------CCCSEEEEEHHHHHHHHHH--TCCCCCCSEE
T ss_pred CEEEECcHHHHHHHHHHHhC-------CCeEEEEecCccc------cCCCCceEEEEchHHHHHHHhc--CccccCCCEE
Confidence 48999999999999987664 3445444443221 1123455677788888766654 4568999999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhC-CCCCcEEEEeeecChh
Q 028826 81 VLDEADRLLDMGFQKQISYIISRL-PKLRRTGLFSATQTEA 120 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~-~~~~q~i~~SAT~~~~ 120 (203)
|+||+|.+ +.++......+.... +..+|++++|||+++.
T Consensus 98 ViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~ 137 (431)
T 2v6i_A 98 IMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGT 137 (431)
T ss_dssp EEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTC
T ss_pred EEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcc
Confidence 99999997 444444444444332 5689999999999974
No 67
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.51 E-value=1.2e-15 Score=134.17 Aligned_cols=99 Identities=20% Similarity=0.279 Sum_probs=63.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHh-------CCCcc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER-------MDVLD 73 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~-------~~~~~ 73 (203)
++||++|||+||.|+++.++.+ ++. . ..+ . + . .++||+++++++.. .....
T Consensus 272 ~~lilaPTr~La~Q~~~~l~~~-----~i~--~-~~~-~-------l-~-----~v~tp~~ll~~l~~~~l~~~l~~~~~ 329 (673)
T 2wv9_A 272 RTAVLAPTRVVAAEMAEALRGL-----PVR--Y-LTP-A-------V-Q-----REHSGNEIVDVMCHATLTHRLMSPLR 329 (673)
T ss_dssp CEEEEESSHHHHHHHHHHTTTS-----CCE--E-CCC-----------------CCCCSCCCEEEEEHHHHHHHHHSSSC
T ss_pred cEEEEccHHHHHHHHHHHHhcC-----Cee--e-ecc-c-------c-c-----ccCCHHHHHHHHHhhhhHHHHhcccc
Confidence 4899999999999999888755 232 1 110 0 0 0 15666555332221 01246
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhC-CCCCcEEEEeeecChhHH
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRL-PKLRRTGLFSATQTEAVE 122 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~-~~~~q~i~~SAT~~~~v~ 122 (203)
+++++++|+||+|++ +..+...+..+...+ +..+|++++|||+++.+.
T Consensus 330 l~~l~lvViDEaH~~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~ 378 (673)
T 2wv9_A 330 VPNYNLFVMDEAHFT-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSD 378 (673)
T ss_dssp CCCCSEEEEESTTCC-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCC
T ss_pred cccceEEEEeCCccc-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhh
Confidence 899999999999998 333333333343333 267999999999997643
No 68
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.50 E-value=2e-14 Score=124.79 Aligned_cols=103 Identities=12% Similarity=0.049 Sum_probs=57.1
Q ss_pred EEEEcCcHHHHHHHH-HHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhC---CCccCCCc
Q 028826 2 GMIISPTRELSAQIY-HVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM---DVLDFRNL 77 (203)
Q Consensus 2 alil~PtreLa~Qi~-~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~---~~~~l~~v 77 (203)
+|||+||++|+.|++ +.++.++ ..+..+.++. ...+.+|+|+||+++....... +.+...++
T Consensus 238 vlil~P~~~L~~Q~~~~~~~~~~-----~~~~~~~~~~---------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~ 303 (590)
T 3h1t_A 238 ILFLADRNVLVDDPKDKTFTPFG-----DARHKIEGGK---------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFF 303 (590)
T ss_dssp EEEEEC-----------CCTTTC-----SSEEECCC-----------CCSSCSEEEEEGGGC------CCGGGGSCTTSC
T ss_pred EEEEeCCHHHHHHHHHHHHHhcc-----hhhhhhhccC---------CCCCCcEEEEEhhhhccccccccccccCCCCcc
Confidence 799999999999999 7777653 2333333321 1457899999999998876521 34566789
Q ss_pred cEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChh
Q 028826 78 VILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120 (203)
Q Consensus 78 ~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~ 120 (203)
+++|+||||++...+ ...++.++..++ ..+++++|||....
T Consensus 304 ~lvIiDEaH~~~~~~-~~~~~~il~~~~-~~~~l~lTATP~~~ 344 (590)
T 3h1t_A 304 DLIIIDECHRGSARD-NSNWREILEYFE-PAFQIGMTATPLRE 344 (590)
T ss_dssp SEEEESCCC----------CHHHHHHST-TSEEEEEESSCSCT
T ss_pred CEEEEECCccccccc-hHHHHHHHHhCC-cceEEEeccccccc
Confidence 999999999986542 355677788885 57899999997643
No 69
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.48 E-value=1.5e-14 Score=122.19 Aligned_cols=102 Identities=14% Similarity=0.132 Sum_probs=67.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
.+||++|||+||.|+++.++.+ .+....+..... ...+-.+.+.|.+.+...+.. ...+++++++
T Consensus 52 ~~lvl~Ptr~La~Q~~~~l~g~-------~v~~~~~~~~~~------~t~~~~i~~~~~~~l~~~l~~--~~~l~~~~~i 116 (459)
T 2z83_A 52 RTAVLAPTRVVAAEMAEALRGL-------PVRYQTSAVQRE------HQGNEIVDVMCHATLTHRLMS--PNRVPNYNLF 116 (459)
T ss_dssp CEEEEECSHHHHHHHHHHTTTS-------CEEECC--------------CCCSEEEEEHHHHHHHHHS--CC-CCCCSEE
T ss_pred cEEEECchHHHHHHHHHHhcCc-------eEeEEecccccC------CCCCcEEEEEchHHHHHHhhc--cccccCCcEE
Confidence 3799999999999999887632 222211111100 123345777888887766654 4678999999
Q ss_pred EEcchhH-----hhhhchHHHHHHHHHhCCCCCcEEEEeeecChhHH
Q 028826 81 VLDEADR-----LLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE 122 (203)
Q Consensus 81 ViDEad~-----l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~v~ 122 (203)
|+||||. ++..++..... .++..|++++|||++..+.
T Consensus 117 ViDEaH~~~~~~~~~~~~~~~~~-----~~~~~~~il~SAT~~~~~~ 158 (459)
T 2z83_A 117 VMDEAHFTDPASIAARGYIATKV-----ELGEAAAIFMTATPPGTTD 158 (459)
T ss_dssp EESSTTCCSHHHHHHHHHHHHHH-----HTTSCEEEEECSSCTTCCC
T ss_pred EEECCccCCchhhHHHHHHHHHh-----ccCCccEEEEEcCCCcchh
Confidence 9999998 55555544322 1368999999999997643
No 70
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.43 E-value=3.7e-13 Score=119.39 Aligned_cols=101 Identities=18% Similarity=0.200 Sum_probs=81.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHH-HHHHHhCC------Ccc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMD------VLD 73 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l-~~~~~~~~------~~~ 73 (203)
+++|++||++||.|+++++..+..++ ++++..++||.+...... ..++||+||||+++ .++++. + .+.
T Consensus 122 qv~VvTPTreLA~Qdae~m~~l~~~l-GLsv~~i~Gg~~~~~r~~---ay~~DIvyGTpgrlgfDyLrd-~m~~~~~~l~ 196 (997)
T 2ipc_A 122 GVHVVTVNDYLARRDAEWMGPVYRGL-GLSVGVIQHASTPAERRK---AYLADVTYVTNSELGFDYLRD-NMAISPDQLV 196 (997)
T ss_dssp CCEEEESSHHHHHHHHHHHHHHHHTT-TCCEEECCTTCCHHHHHH---HHTSSEEEEEHHHHHHHHHHH-TSCSSTTTCC
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHHhc-CCeEEEEeCCCCHHHHHH---HcCCCEEEECchhhhhHHHHH-hhhcchhhcc
Confidence 47999999999999999999999988 899999999988543332 24699999999999 899887 4 356
Q ss_pred CC---CccEEEEcchhHhh-hhc---------------hHHHHHHHHHhCCC
Q 028826 74 FR---NLVILVLDEADRLL-DMG---------------FQKQISYIISRLPK 106 (203)
Q Consensus 74 l~---~v~~lViDEad~l~-~~~---------------~~~~~~~il~~~~~ 106 (203)
++ ++.++|+||+|.|+ +.+ ....+..++..++.
T Consensus 197 ~r~d~~l~~lIIDEaDsmLiDeartPLIISgp~~~~~~lY~~~~~~i~~L~~ 248 (997)
T 2ipc_A 197 LRHDHPLHYAIIDEVDSILIDEARTPLIISGPAEKATDLYYKMAEIAKKLER 248 (997)
T ss_dssp SCSSSSSCEEEETTHHHHTTSSTTSCEEEEESCSSCHHHHHHHHHHHHHSCC
T ss_pred cccCCCcceEEEechHHHHHhCCCCCeeeeCCCccchHHHHHHHHHHHHhhh
Confidence 77 99999999999997 321 23456677776653
No 71
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.42 E-value=4.7e-14 Score=128.81 Aligned_cols=107 Identities=13% Similarity=0.172 Sum_probs=81.5
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCC-CccCCCccEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMD-VLDFRNLVIL 80 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~-~~~l~~v~~l 80 (203)
+|||+|+++|+.|+.+.+.+++... +.++.+.......+...+++|+|+||+++..++.... ...++...++
T Consensus 333 vLvlvpr~eL~~Q~~~~f~~f~~~~-------v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lv 405 (1038)
T 2w00_A 333 VFFVVDRKDLDYQTMKEYQRFSPDS-------VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVF 405 (1038)
T ss_dssp EEEEECGGGCCHHHHHHHHTTSTTC-------SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEE
T ss_pred EEEEeCcHHHHHHHHHHHHHhcccc-------cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEE
Confidence 7999999999999999999986431 2345555555556645679999999999999887622 1245678999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecCh
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~ 119 (203)
|+||||++...+ ....+...++ ++++++||||...
T Consensus 406 IiDEAHrs~~~~---~~~~I~~~~p-~a~~lgfTATP~~ 440 (1038)
T 2w00_A 406 IFDECHRSQFGE---AQKNLKKKFK-RYYQFGFTGTPIF 440 (1038)
T ss_dssp EEESCCTTHHHH---HHHHHHHHCS-SEEEEEEESSCCC
T ss_pred EEEccchhcchH---HHHHHHHhCC-cccEEEEeCCccc
Confidence 999999986433 3456667775 5899999999874
No 72
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.33 E-value=4.7e-13 Score=117.60 Aligned_cols=109 Identities=17% Similarity=0.083 Sum_probs=81.8
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
++|++|||+||.|+++.++++ ++++..++||...... ......+++++|++.+. ....++++|
T Consensus 182 gl~l~PtR~LA~Qi~~~l~~~-----g~~v~lltG~~~~iv~---TpGr~~~il~~T~e~~~---------l~~~v~lvV 244 (677)
T 3rc3_A 182 GVYCGPLKLLAHEIFEKSNAA-----GVPCDLVTGEERVTVQ---PNGKQASHVSCTVEMCS---------VTTPYEVAV 244 (677)
T ss_dssp EEEEESSHHHHHHHHHHHHHT-----TCCEEEECSSCEECCS---TTCCCCSEEEEEGGGCC---------SSSCEEEEE
T ss_pred eEEEeCHHHHHHHHHHHHHhc-----CCcEEEEECCeeEEec---CCCcccceeEecHhHhh---------hcccCCEEE
Confidence 589999999999999998876 6788888888654100 00012567777775432 246789999
Q ss_pred EcchhHhhhhchHHHHHHHHHhCC-CCCcEEEEeeecChhHHHHHHhc
Q 028826 82 LDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSATQTEAVEELSKAG 128 (203)
Q Consensus 82 iDEad~l~~~~~~~~~~~il~~~~-~~~q~i~~SAT~~~~v~~~~~~~ 128 (203)
+||+|.+.+.++...+..++..++ ...|++++|||. +.+..+....
T Consensus 245 IDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~-~~i~~l~~~~ 291 (677)
T 3rc3_A 245 IDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAI-DLVMELMYTT 291 (677)
T ss_dssp ECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGH-HHHHHHHHHH
T ss_pred EecceecCCccchHHHHHHHHccCccceEEEeccchH-HHHHHHHHhc
Confidence 999999999899999999999887 778999999995 3455555543
No 73
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.29 E-value=1.3e-11 Score=95.52 Aligned_cols=96 Identities=20% Similarity=0.134 Sum_probs=73.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCce-EEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVK-SMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVI 79 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~-~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~ 79 (203)
.+||++|+++|+.|+++.+.++ +++ +..+.|+.. ...+|+|+||+.+...... ...++++
T Consensus 135 ~~liv~P~~~L~~q~~~~~~~~-----~~~~v~~~~g~~~----------~~~~i~v~T~~~l~~~~~~----~~~~~~l 195 (237)
T 2fz4_A 135 PTLIVVPTLALAEQWKERLGIF-----GEEYVGEFSGRIK----------ELKPLTVSTYDSAYVNAEK----LGNRFML 195 (237)
T ss_dssp CEEEEESSHHHHHHHHHHHGGG-----CGGGEEEESSSCB----------CCCSEEEEEHHHHHHTHHH----HTTTCSE
T ss_pred CEEEEeCCHHHHHHHHHHHHhC-----CCCeEEEEeCCCC----------CcCCEEEEeHHHHHhhHHH----hcccCCE
Confidence 3799999999999999998884 567 777766643 3579999999998766543 1245899
Q ss_pred EEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecChh
Q 028826 80 LVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120 (203)
Q Consensus 80 lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~ 120 (203)
+|+||+|.+.+..+. .++..+ +..+++++|||.++.
T Consensus 196 lIiDEaH~l~~~~~~----~i~~~~-~~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 196 LIFDEVHHLPAESYV----QIAQMS-IAPFRLGLTATFERE 231 (237)
T ss_dssp EEEECSSCCCTTTHH----HHHHTC-CCSEEEEEEESCC--
T ss_pred EEEECCccCCChHHH----HHHHhc-cCCEEEEEecCCCCC
Confidence 999999999776654 345555 478899999998753
No 74
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.11 E-value=6.9e-10 Score=97.10 Aligned_cols=85 Identities=14% Similarity=0.051 Sum_probs=64.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcC-------------------------------------------
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGG------------------------------------------- 37 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g------------------------------------------- 37 (203)
.+.|++||++||.|-.+++..+...+ |++++++++.
T Consensus 118 ~vhVvT~ndyLA~rdae~m~~l~~~L-glsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 196 (822)
T 3jux_A 118 GVHLVTVNDYLARRDALWMGPVYLFL-GLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEA 196 (822)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHT-TCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHH
T ss_pred ceEEEeccHHHHHhHHHHHHHHHHHh-CCEEEEEcCCCcccccccccchhhhhhhccccccccccccccccccccccccc
Confidence 36899999999999999999999999 9999999982
Q ss_pred -------cchHHHHHHHHhCCCeEEEeccHHHH-HHHHhCC-----CccCCCccEEEEcchhHhh
Q 028826 38 -------VEVKADVKKIEEEGANLLIGTPGRLY-DIMERMD-----VLDFRNLVILVLDEADRLL 89 (203)
Q Consensus 38 -------~~~~~~~~~l~~~~~~ilV~Tp~~l~-~~~~~~~-----~~~l~~v~~lViDEad~l~ 89 (203)
.+..+.... -.+||..||..-+- ++++.+= ..-.....+.||||+|.++
T Consensus 197 ~~~~~~~~~~~err~a---Y~~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiL 258 (822)
T 3jux_A 197 VEAFQVELKEITRKEA---YLCDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVL 258 (822)
T ss_dssp HTTTCEECCBCCHHHH---HHSSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHH
T ss_pred chhccccCCHHHHHHH---hcCCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEeccccee
Confidence 222222222 24899999999985 6776511 1123578899999999976
No 75
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.07 E-value=6.2e-11 Score=100.73 Aligned_cols=101 Identities=17% Similarity=0.185 Sum_probs=71.9
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
+|||||+ .|+.|+.++++++++ ++++..+.|+... .....++|+|+||+.+..... +...+.+++|
T Consensus 89 ~LIv~P~-~l~~qw~~e~~~~~~---~~~v~~~~g~~~~------~~~~~~~ivi~t~~~l~~~~~----l~~~~~~~vI 154 (500)
T 1z63_A 89 SLVICPL-SVLKNWEEELSKFAP---HLRFAVFHEDRSK------IKLEDYDIILTTYAVLLRDTR----LKEVEWKYIV 154 (500)
T ss_dssp EEEEECS-TTHHHHHHHHHHHCT---TSCEEECSSSTTS------CCGGGSSEEEEEHHHHTTCHH----HHTCCEEEEE
T ss_pred EEEEccH-HHHHHHHHHHHHHCC---CceEEEEecCchh------ccccCCcEEEeeHHHHhccch----hcCCCcCEEE
Confidence 6999995 589999999999853 5677776666532 112468999999999865432 2334678999
Q ss_pred EcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecCh
Q 028826 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (203)
Q Consensus 82 iDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~ 119 (203)
+||||.+-..+ ......+..+ +..+.+++|||...
T Consensus 155 vDEaH~~kn~~--~~~~~~l~~l-~~~~~l~LTaTP~~ 189 (500)
T 1z63_A 155 IDEAQNIKNPQ--TKIFKAVKEL-KSKYRIALTGTPIE 189 (500)
T ss_dssp EETGGGGSCTT--SHHHHHHHTS-CEEEEEEECSSCST
T ss_pred EeCccccCCHh--HHHHHHHHhh-ccCcEEEEecCCCC
Confidence 99999986543 2334455556 35678999999743
No 76
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=98.99 E-value=8.5e-11 Score=107.37 Aligned_cols=112 Identities=20% Similarity=0.115 Sum_probs=67.9
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHH-HHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKK-IEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~-l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
+|||||+ .|+.|+..++.+.. ++++..+.|+......... -.....+|+|+|++.+.........+...++.++
T Consensus 203 vLIVvP~-sLl~Qw~~E~~~~f----~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlV 277 (968)
T 3dmq_A 203 VLIIVPE-TLQHQWLVEMLRRF----NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLL 277 (968)
T ss_dssp EEEECCT-TTHHHHHHHHHHHS----CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEE
T ss_pred EEEEeCH-HHHHHHHHHHHHHh----CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEE
Confidence 7999999 99999999986653 4565555444322211110 0012569999999988532111012345678899
Q ss_pred EEcchhHhhhhchH-HHHHHHHHhC-CCCCcEEEEeeecC
Q 028826 81 VLDEADRLLDMGFQ-KQISYIISRL-PKLRRTGLFSATQT 118 (203)
Q Consensus 81 ViDEad~l~~~~~~-~~~~~il~~~-~~~~q~i~~SAT~~ 118 (203)
|+||||++-..+.. ......+..+ .+.++++++|||..
T Consensus 278 IvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi 317 (968)
T 3dmq_A 278 VVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPE 317 (968)
T ss_dssp EECCSSCCCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCS
T ss_pred EehhhHhhcCCCCcchHHHHHHHHHhhcCCcEEEEEcCCc
Confidence 99999998543311 1112222222 35567999999974
No 77
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.82 E-value=2.2e-08 Score=89.87 Aligned_cols=106 Identities=16% Similarity=0.256 Sum_probs=74.2
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH-----------HhCCCeEEEeccHHHHHHHHhCC
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI-----------EEEGANLLIGTPGRLYDIMERMD 70 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l-----------~~~~~~ilV~Tp~~l~~~~~~~~ 70 (203)
+||||| ..|+.|+.+++.+++ |++++..++|+.......... ....++|+|+|++.+......
T Consensus 289 ~LIV~P-~sll~qW~~E~~~~~---p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~-- 362 (800)
T 3mwy_W 289 HIIVVP-LSTMPAWLDTFEKWA---PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE-- 362 (800)
T ss_dssp EEEECC-TTTHHHHHHHHHHHS---TTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--
T ss_pred EEEEEC-chHHHHHHHHHHHHC---CCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--
Confidence 699999 678899999998885 467888888776655443322 124578999999999764432
Q ss_pred CccCCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeec
Q 028826 71 VLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117 (203)
Q Consensus 71 ~~~l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~ 117 (203)
+.-.+..++|+||||++-.. .......+..+ +....+++|||.
T Consensus 363 -l~~~~w~~vIvDEaH~lkn~--~s~~~~~l~~l-~~~~rl~LTgTP 405 (800)
T 3mwy_W 363 -LGSIKWQFMAVDEAHRLKNA--ESSLYESLNSF-KVANRMLITGTP 405 (800)
T ss_dssp -HHTSEEEEEEETTGGGGCCS--SSHHHHHHTTS-EEEEEEEECSCC
T ss_pred -HhcCCcceeehhhhhhhcCc--hhHHHHHHHHh-hhccEEEeeCCc
Confidence 22335789999999998432 22344455555 456678899997
No 78
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.74 E-value=1.4e-08 Score=87.43 Aligned_cols=87 Identities=21% Similarity=0.176 Sum_probs=64.8
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcch---------------------------------HHHHHHH-
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEV---------------------------------KADVKKI- 47 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~---------------------------------~~~~~~l- 47 (203)
++|++||++|+.|+.+++.++.... ++++..+.|+... ......+
T Consensus 50 v~i~~pt~~l~~q~~~~~~~l~~~~-~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~ 128 (551)
T 3crv_A 50 VLFVVRTHNEFYPIYRDLTKIREKR-NITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLK 128 (551)
T ss_dssp EEEEESSGGGHHHHHHHHTTCCCSS-CCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHHHHHhhhc-CccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHH
Confidence 7999999999999999999997766 7888887764321 1111111
Q ss_pred ----------------HhCCCeEEEeccHHHHHHHHhCCCccC-CCccEEEEcchhHhhh
Q 028826 48 ----------------EEEGANLLIGTPGRLYDIMERMDVLDF-RNLVILVLDEADRLLD 90 (203)
Q Consensus 48 ----------------~~~~~~ilV~Tp~~l~~~~~~~~~~~l-~~v~~lViDEad~l~~ 90 (203)
....+||||+|+..|.+.... ..+.+ .+..++||||||.|.+
T Consensus 129 ~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l~~~~~~-~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 129 KDGLQDKFCPYYSLLNSLYKADVIALTYPYFFIDRYR-EFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HHHHHHTCCHHHHHHHHGGGCSEEEEETHHHHCHHHH-TTSCCCSTTEEEEETTGGGGGG
T ss_pred HcCCcCCcCccHHHHhhhhcCCEEEeCchHhcCHHHH-HhcCCCcCCeEEEEecccchHH
Confidence 124789999999999987554 33433 4678999999999976
No 79
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=98.57 E-value=4.1e-07 Score=79.79 Aligned_cols=109 Identities=19% Similarity=0.270 Sum_probs=74.0
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHH--HHHHh-----CCCeEEEeccHHHHHHHHhCCCccC
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADV--KKIEE-----EGANLLIGTPGRLYDIMERMDVLDF 74 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~--~~l~~-----~~~~ilV~Tp~~l~~~~~~~~~~~l 74 (203)
+|||+|+ .|+.|+.+++.++.+. .+++..+.||....... ..... ...+|+|+|++.+.... ..+..
T Consensus 117 ~LiV~P~-sll~qW~~E~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~---~~l~~ 190 (644)
T 1z3i_X 117 VIVVSPS-SLVRNWYNEVGKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA---EVLHK 190 (644)
T ss_dssp EEEEECH-HHHHHHHHHHHHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT---TTTTT
T ss_pred EEEEecH-HHHHHHHHHHHHHcCC--CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH---HHhhc
Confidence 6999997 7999999999999765 46777777775433221 11111 14789999999987543 33445
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecCh
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~ 119 (203)
.+..++|+||||.+-... ......+..+ +....+++|||.-.
T Consensus 191 ~~~~~vI~DEaH~ikn~~--~~~~~al~~l-~~~~rl~LTgTPiq 232 (644)
T 1z3i_X 191 GKVGLVICDEGHRLKNSD--NQTYLALNSM-NAQRRVLISGTPIQ 232 (644)
T ss_dssp SCCCEEEETTGGGCCTTC--HHHHHHHHHH-CCSEEEEECSSCSG
T ss_pred CCccEEEEECceecCChh--hHHHHHHHhc-ccCcEEEEecCccc
Confidence 678899999999984332 2223334444 35678999999643
No 80
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=98.33 E-value=5.4e-07 Score=79.22 Aligned_cols=131 Identities=16% Similarity=0.150 Sum_probs=72.2
Q ss_pred EcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEEEcchhHhhhh--chHHHH----HHHHHh-----
Q 028826 35 VGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDM--GFQKQI----SYIISR----- 103 (203)
Q Consensus 35 ~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lViDEad~l~~~--~~~~~~----~~il~~----- 103 (203)
.|+.....+...+ ..+ +||++|++++.. + .++|+||+|++++. ++.... ..+...
T Consensus 304 ~G~e~~~~~~~~~-~~g-----~tpg~LlDyl~~-~-------~llVlDEa~~~l~~~~~~~~~~~~~~~~l~~~G~~lp 369 (661)
T 2d7d_A 304 SGIENYSRHLTLR-PPG-----STPYTLLDYFPD-D-------FMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLP 369 (661)
T ss_dssp TTGGGGHHHHTTC-CTT-----CCCBCGGGGSCS-S-------CEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCG
T ss_pred ccchhHHHHHccc-cCC-----CCccHHHHHccc-C-------cEEEEecHHHHHHHHHHHHHHHHHHHHHHHHccccch
Confidence 4555555555433 223 999999998854 2 28999999998742 122111 111111
Q ss_pred -------------CCCCCcEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCCCceeEEEEEcC
Q 028826 104 -------------LPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECE 170 (203)
Q Consensus 104 -------------~~~~~q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 170 (203)
.+..+|+++||||.++..... ........+... ....+. +...+
T Consensus 370 ~~l~~~~l~~~e~~~~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~---------------~l~~p~----i~v~~ 426 (661)
T 2d7d_A 370 SALDNRPLRFEEFEKHMHNIVYVSATPGPYEIEH----TDEMVEQIIRPT---------------GLLDPL----IDVRP 426 (661)
T ss_dssp GGGGSCCCCHHHHHHTCSEEEEECSSCCHHHHHH----CSSCEEECCCTT---------------CCCCCE----EEEEC
T ss_pred hhhhcccccHHHHhccCCCEEEEecCCChhHHHh----hhCeeeeeeccc---------------CCCCCe----EEEec
Confidence 124689999999998654322 111111111111 001111 22234
Q ss_pred CCCcHHHHHHHHhc--CCCCeEEEEeccCCcccC
Q 028826 171 SDKKPSQLVDLLIK--NKSKKIIMYVQHGNFSED 202 (203)
Q Consensus 171 ~~~k~~~l~~ll~~--~~~~~~lIF~ns~~~~e~ 202 (203)
...+...+...+.. ..++++||||+|+..|++
T Consensus 427 ~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~ 460 (661)
T 2d7d_A 427 IEGQIDDLIGEIQARIERNERVLVTTLTKKMSED 460 (661)
T ss_dssp STTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHH
T ss_pred ccchHHHHHHHHHHHHhcCCeEEEEECCHHHHHH
Confidence 44566666565543 356799999999887763
No 81
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.14 E-value=2.2e-06 Score=73.69 Aligned_cols=82 Identities=21% Similarity=0.260 Sum_probs=51.8
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcch--------HH------------------------HHHHH--
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEV--------KA------------------------DVKKI-- 47 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~--------~~------------------------~~~~l-- 47 (203)
++|++||++|+.|+.+++.++ ++++..+.|.... .. ....+
T Consensus 54 ~~~~~~t~~l~~q~~~~~~~l-----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~ 128 (540)
T 2vl7_A 54 VLIFTRTHSQLDSIYKNAKLL-----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKD 128 (540)
T ss_dssp EEEEESCHHHHHHHHHHHGGG-----TCCEEEC-----------------------------------------------
T ss_pred EEEEcCCHHHHHHHHHHHHhc-----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhh
Confidence 789999999999999988875 3444444432210 00 00000
Q ss_pred ------------HhCCCeEEEeccHHHHHHHHhCCCc-------cCCCccEEEEcchhHhh
Q 028826 48 ------------EEEGANLLIGTPGRLYDIMERMDVL-------DFRNLVILVLDEADRLL 89 (203)
Q Consensus 48 ------------~~~~~~ilV~Tp~~l~~~~~~~~~~-------~l~~v~~lViDEad~l~ 89 (203)
....+||||+|+..+.+.... +.+ .+.+..++||||||.|.
T Consensus 129 ~~~~Cpy~~~r~~~~~adiVV~n~~~l~~~~~~-~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 129 AVDYCPYYSLRANLKDKDVIAMTYPYLFQKPIR-NSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp ----------CTTGGGCSEEEEETHHHHSHHHH-HHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred hcCCChHHHHHHHhhcCCEEEEChHHhcCHHHH-HhhCcccccccCcCCCEEEEEccccHH
Confidence 013579999999999874433 222 23567899999999994
No 82
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=98.11 E-value=4.8e-06 Score=73.25 Aligned_cols=115 Identities=13% Similarity=0.135 Sum_probs=63.7
Q ss_pred eccHHHHHHHHhCCCccCCCccEEEEcchhHhhhh-c--hHHH---HHHHHHh------------------CCCCCcEEE
Q 028826 57 GTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDM-G--FQKQ---ISYIISR------------------LPKLRRTGL 112 (203)
Q Consensus 57 ~Tp~~l~~~~~~~~~~~l~~v~~lViDEad~l~~~-~--~~~~---~~~il~~------------------~~~~~q~i~ 112 (203)
+||++|.+++.. + .++|+||+|++++. + +... ...+... .+...|+++
T Consensus 314 ~tp~~LlDyl~~-~-------~llVlDEah~~~~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~ 385 (664)
T 1c4o_A 314 EPPYTLLDYFPE-D-------FLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSALDNRPLRFEEFLERVSQVVF 385 (664)
T ss_dssp SCCCCGGGGSCT-T-------CEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSSCCCHHHHHHTCSEEEE
T ss_pred CCchHHHHHHhh-c-------cEEEEecccccHHHHHHHHHHHHHHHHHHHHccccchhhhhcCcccHHHHHhhcCCEEE
Confidence 889999887754 2 38999999998742 1 1111 1111111 124679999
Q ss_pred EeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCCCceeEEEEEcCCCCcHHHHHHHHhcC--CCCeE
Q 028826 113 FSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPSQLVDLLIKN--KSKKI 190 (203)
Q Consensus 113 ~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~--~~~~~ 190 (203)
||||.++..... . ...+....... ....+ .+...+...+...+...+... .+.++
T Consensus 386 ~SAT~~~~~~~~----~--~~~~~~~~r~~-------------~l~~p----~i~v~~~~~~~~~Ll~~l~~~~~~~~~v 442 (664)
T 1c4o_A 386 VSATPGPFELAH----S--GRVVEQIIRPT-------------GLLDP----LVRVKPTENQILDLMEGIRERAARGERT 442 (664)
T ss_dssp EESSCCHHHHHH----C--SEEEEECSCTT-------------CCCCC----EEEEECSTTHHHHHHHHHHHHHHTTCEE
T ss_pred EecCCCHHHHHh----h--hCeeeeeeccC-------------CCCCC----eEEEecccchHHHHHHHHHHHHhcCCEE
Confidence 999998654222 1 11122211100 00111 122234455666666666432 56799
Q ss_pred EEEeccCCcccC
Q 028826 191 IMYVQHGNFSED 202 (203)
Q Consensus 191 lIF~ns~~~~e~ 202 (203)
||||+|+..|++
T Consensus 443 lVf~~t~~~ae~ 454 (664)
T 1c4o_A 443 LVTVLTVRMAEE 454 (664)
T ss_dssp EEECSSHHHHHH
T ss_pred EEEECCHHHHHH
Confidence 999999987763
No 83
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=97.86 E-value=5.2e-06 Score=61.72 Aligned_cols=60 Identities=10% Similarity=0.088 Sum_probs=36.7
Q ss_pred HhcCCCCeEEEeccCcccccccchhhhhccCCCCCceeEEEEEcCCCCcHHHHHHHHhcCCCCeEEEEeccCCccc
Q 028826 126 KAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPSQLVDLLIKNKSKKIIMYVQHGNFSE 201 (203)
Q Consensus 126 ~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~ns~~~~e 201 (203)
..|+.+|..+.+... .....++.|+|+.++.++|...|.+++...+ +++||||++++.++
T Consensus 9 ~~~~~~p~~i~v~~~---------------~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~-~~~lVF~~~~~~~~ 68 (191)
T 2p6n_A 9 SGVDLGTENLYFQSM---------------GAASLDVIQEVEYVKEEAKMVYLLECLQKTP-PPVLIFAEKKADVD 68 (191)
T ss_dssp ----------------------------------CCSEEEEEECCGGGHHHHHHHHHTTSC-SCEEEECSCHHHHH
T ss_pred ccccCCCEEEEECCC---------------CCCCcCceEEEEEcChHHHHHHHHHHHHhCC-CCEEEEECCHHHHH
Confidence 468889999988776 4567899999999999999999999998754 58999999988765
No 84
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=97.31 E-value=0.00012 Score=53.92 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=39.6
Q ss_pred CCCCCceeEEEEEcCCCCcHHHHHHHHhcC-CCCeEEEEeccCCccc
Q 028826 156 SKTPLGLHLEYLECESDKKPSQLVDLLIKN-KSKKIIMYVQHGNFSE 201 (203)
Q Consensus 156 ~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lIF~ns~~~~e 201 (203)
...++++.|+|+.++..+|...|.++++.. ..+++||||++++.|+
T Consensus 14 ~~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~ 60 (185)
T 2jgn_A 14 GSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGAD 60 (185)
T ss_dssp --CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHH
T ss_pred CCCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHH
Confidence 346789999999999999999999999987 5789999999988765
No 85
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.10 E-value=0.00066 Score=59.10 Aligned_cols=99 Identities=20% Similarity=0.273 Sum_probs=56.7
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEE-eccHHHHHHHHhCCCccCCCccEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLI-GTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV-~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
+++++||+++|.|+.+.+......+ +++.... .+... . ....+-++ .+|+.. . +.. ......+++++
T Consensus 199 vll~APTg~AA~~L~e~~~~~~~~l-~l~~~~~-~~~~~--~-----~~Tih~ll~~~~~~~-~-~~~-~~~~~l~~d~l 266 (608)
T 1w36_D 199 IRLAAPTGKAAARLTESLGKALRQL-PLTDEQK-KRIPE--D-----ASTLHRLLGAQPGSQ-R-LRH-HAGNPLHLDVL 266 (608)
T ss_dssp EEEEBSSHHHHHHHHHHHTHHHHHS-SCCSCCC-CSCSC--C-----CBTTTSCC--------------CTTSCCSCSEE
T ss_pred EEEEeCChhHHHHHHHHHHHHHhcC-CCCHHHH-hccch--h-----hhhhHhhhccCCCch-H-HHh-ccCCCCCCCEE
Confidence 5789999999999998888776554 3321100 00000 0 00111122 223221 1 112 22233478999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeee
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 116 (203)
|||||+ |++ .+.+..++..++...|+++++-.
T Consensus 267 IIDEAs-ml~---~~~~~~Ll~~l~~~~~liLvGD~ 298 (608)
T 1w36_D 267 VVDEAS-MID---LPMMSRLIDALPDHARVIFLGDR 298 (608)
T ss_dssp EECSGG-GCB---HHHHHHHHHTCCTTCEEEEEECT
T ss_pred EEechh-hCC---HHHHHHHHHhCCCCCEEEEEcch
Confidence 999999 555 45678889999999999998754
No 86
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=96.77 E-value=0.011 Score=42.13 Aligned_cols=71 Identities=14% Similarity=0.192 Sum_probs=55.2
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+||+++|++-+..+.+.+.+. ++++..++|+.+..+....+ .++..+|||+|. . +. .++|+.+++
T Consensus 38 ~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-~----~~--~Gld~~~~~ 105 (163)
T 2hjv_A 38 CIIFCRTKEHVNQLTDELDDL-----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-V----AA--RGIDIENIS 105 (163)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-G----GT--TTCCCSCCS
T ss_pred EEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-h----hh--cCCchhcCC
Confidence 799999999999998888775 68899999998766554433 346789999994 2 22 578999999
Q ss_pred EEEEcc
Q 028826 79 ILVLDE 84 (203)
Q Consensus 79 ~lViDE 84 (203)
++|.-+
T Consensus 106 ~Vi~~~ 111 (163)
T 2hjv_A 106 LVINYD 111 (163)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 988743
No 87
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=96.64 E-value=0.019 Score=42.14 Aligned_cols=69 Identities=19% Similarity=0.257 Sum_probs=54.7
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+||+++|++-+..+.+.+++. ++++..++|+.+..++...+ .++..+|+|+|. .+. ..+|+.+++
T Consensus 57 ~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~--~Gldi~~v~ 124 (191)
T 2p6n_A 57 VLIFAEKKADVDAIHEYLLLK-----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VAS--KGLDFPAIQ 124 (191)
T ss_dssp EEEECSCHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHH--TTCCCCCCS
T ss_pred EEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chh--cCCCcccCC
Confidence 799999999999998888775 68899999998766555433 346789999993 233 578999999
Q ss_pred EEEE
Q 028826 79 ILVL 82 (203)
Q Consensus 79 ~lVi 82 (203)
++|.
T Consensus 125 ~VI~ 128 (191)
T 2p6n_A 125 HVIN 128 (191)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9887
No 88
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=96.48 E-value=0.022 Score=40.61 Aligned_cols=72 Identities=10% Similarity=0.131 Sum_probs=55.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhCCCccCCCc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v 77 (203)
.+||+++|++-+..+...+.+. ++.+..++|+.+..+....+ .++..+|+|+|.. +. .++|+.++
T Consensus 32 ~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~--~G~d~~~~ 99 (165)
T 1fuk_A 32 QAVIFCNTRRKVEELTTKLRND-----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDL-----LA--RGIDVQQV 99 (165)
T ss_dssp CEEEEESSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGG-----GT--TTCCCCSC
T ss_pred CEEEEECCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCh-----hh--cCCCcccC
Confidence 3799999999999888887764 67889999998766554433 3467899999942 22 57899999
Q ss_pred cEEEEcc
Q 028826 78 VILVLDE 84 (203)
Q Consensus 78 ~~lViDE 84 (203)
+++|.-+
T Consensus 100 ~~Vi~~~ 106 (165)
T 1fuk_A 100 SLVINYD 106 (165)
T ss_dssp SEEEESS
T ss_pred CEEEEeC
Confidence 9988743
No 89
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=96.16 E-value=0.021 Score=41.14 Aligned_cols=72 Identities=8% Similarity=0.110 Sum_probs=55.7
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhCCCccCCCc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v 77 (203)
.+||.+++++-+..+.+.+.+. ++++..++|+.+..+....+ .++..+|+|+|.. + . .++|+.++
T Consensus 33 ~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~-~-~Gldi~~~ 100 (172)
T 1t5i_A 33 QVVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-----F-G-RGMDIERV 100 (172)
T ss_dssp SEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-----C-S-TTCCGGGC
T ss_pred cEEEEECCHHHHHHHHHHHHhc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc-----h-h-cCcchhhC
Confidence 3799999999999888888775 68889999998766555433 3467899999953 1 2 57899999
Q ss_pred cEEEEcc
Q 028826 78 VILVLDE 84 (203)
Q Consensus 78 ~~lViDE 84 (203)
+++|.-+
T Consensus 101 ~~Vi~~d 107 (172)
T 1t5i_A 101 NIAFNYD 107 (172)
T ss_dssp SEEEESS
T ss_pred CEEEEEC
Confidence 9988743
No 90
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=96.06 E-value=0.044 Score=40.80 Aligned_cols=69 Identities=14% Similarity=0.184 Sum_probs=54.7
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+||.+||++-+..+.+.+.+. ++.+..++|+.+..++...+ .++..+|+|+|.- + . .++|+.+++
T Consensus 34 ~lVF~~~~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~-----~-~-~Gidi~~v~ 101 (212)
T 3eaq_A 34 AMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDV-----A-A-RGLDIPQVD 101 (212)
T ss_dssp EEEECSSHHHHHHHHHHHHHH-----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTT-----T-T-CSSSCCCBS
T ss_pred EEEEeCCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecCh-----h-h-cCCCCccCc
Confidence 799999999999888888775 78899999998876655543 3467899999942 2 2 689999999
Q ss_pred EEEE
Q 028826 79 ILVL 82 (203)
Q Consensus 79 ~lVi 82 (203)
++|.
T Consensus 102 ~Vi~ 105 (212)
T 3eaq_A 102 LVVH 105 (212)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8884
No 91
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=96.04 E-value=0.034 Score=39.99 Aligned_cols=69 Identities=20% Similarity=0.200 Sum_probs=54.3
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+||+++|++-+..+...+.+. ++++..++|+.+..+....+ .++..+|+|+|.. + . .++|+.++.
T Consensus 37 ~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~-----~-~-~Gid~~~~~ 104 (175)
T 2rb4_A 37 AIIFCQTRRNAKWLTVEMIQD-----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNV-----C-A-RGIDVKQVT 104 (175)
T ss_dssp EEEECSCHHHHHHHHHHHHTT-----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCS-----C-C-TTTCCTTEE
T ss_pred EEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecc-----h-h-cCCCcccCC
Confidence 799999999999888887764 68899999998866555433 3467899999952 2 2 578999999
Q ss_pred EEEE
Q 028826 79 ILVL 82 (203)
Q Consensus 79 ~lVi 82 (203)
++|.
T Consensus 105 ~Vi~ 108 (175)
T 2rb4_A 105 IVVN 108 (175)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9985
No 92
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=95.86 E-value=0.026 Score=41.15 Aligned_cols=69 Identities=10% Similarity=0.138 Sum_probs=44.8
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHH---HHHhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~---~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+||+++|++-+..+.+.++.. ++.+..++|+.+..+... ...++...|||+|. .+. .++|+.++.
T Consensus 49 ~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~--~Gldi~~~~ 116 (185)
T 2jgn_A 49 TLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA--RGLDISNVK 116 (185)
T ss_dssp EEEEESCHHHHHHHHHHHHHT-----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC-------------CCCSBS
T ss_pred EEEEECCHHHHHHHHHHHHHc-----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-----hhh--cCCCcccCC
Confidence 799999999999888887764 688999999876554433 33357789999994 222 578889999
Q ss_pred EEEE
Q 028826 79 ILVL 82 (203)
Q Consensus 79 ~lVi 82 (203)
++|.
T Consensus 117 ~VI~ 120 (185)
T 2jgn_A 117 HVIN 120 (185)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8886
No 93
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=95.36 E-value=0.085 Score=43.63 Aligned_cols=69 Identities=12% Similarity=0.133 Sum_probs=55.2
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+||+++|++-|..+.+.+.+. ++++..++|+.+..++...+ .++..+|||+|.- + . .++|+.+++
T Consensus 303 ~lVF~~t~~~a~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v-----~-~-rGlDi~~v~ 370 (434)
T 2db3_A 303 TIVFVETKRGADFLASFLSEK-----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSV-----A-S-RGLDIKNIK 370 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGG-----G-T-SSCCCTTCC
T ss_pred EEEEEeCcHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchh-----h-h-CCCCcccCC
Confidence 689999999999888888764 78899999998776655543 3467899999972 2 2 689999999
Q ss_pred EEEE
Q 028826 79 ILVL 82 (203)
Q Consensus 79 ~lVi 82 (203)
++|.
T Consensus 371 ~VI~ 374 (434)
T 2db3_A 371 HVIN 374 (434)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9986
No 94
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=95.32 E-value=0.11 Score=42.25 Aligned_cols=69 Identities=10% Similarity=0.137 Sum_probs=55.0
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+||+++|++-+..+++.+++. ++.+..++|+.+..++...+ .++..+|||+|. .+. .++|+.+++
T Consensus 279 ~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~--~Gidip~v~ 346 (417)
T 2i4i_A 279 TLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA--RGLDISNVK 346 (417)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHH--TTSCCCCEE
T ss_pred EEEEECCHHHHHHHHHHHHHC-----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhh--cCCCcccCC
Confidence 699999999999998888774 68899999998866554433 346789999996 333 589999999
Q ss_pred EEEE
Q 028826 79 ILVL 82 (203)
Q Consensus 79 ~lVi 82 (203)
++|.
T Consensus 347 ~Vi~ 350 (417)
T 2i4i_A 347 HVIN 350 (417)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9886
No 95
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.08 E-value=0.1 Score=41.40 Aligned_cols=71 Identities=15% Similarity=0.273 Sum_probs=54.7
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHH---HHhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKK---IEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~---l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+||++++++-+.++.+.+++. ++++..++|+.+..+.... ..++..+|+|+|. .+. .++|+.+++
T Consensus 241 ~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~--~Gid~~~~~ 308 (367)
T 1hv8_A 241 GLVFCKTKRDTKELASMLRDI-----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMS--RGIDVNDLN 308 (367)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THH--HHCCCSCCS
T ss_pred EEEEECCHHHHHHHHHHHHhc-----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhh--cCCCcccCC
Confidence 699999999999998888775 6788899998876655443 3356789999995 233 368888999
Q ss_pred EEEEcc
Q 028826 79 ILVLDE 84 (203)
Q Consensus 79 ~lViDE 84 (203)
++|.-+
T Consensus 309 ~Vi~~~ 314 (367)
T 1hv8_A 309 CVINYH 314 (367)
T ss_dssp EEEESS
T ss_pred EEEEec
Confidence 988643
No 96
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=95.02 E-value=0.14 Score=43.63 Aligned_cols=74 Identities=14% Similarity=0.225 Sum_probs=58.7
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHH---HHhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKK---IEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~---l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+||+++|+.-+..+.+.+.+.... ++.+..++|+.+..+.... ..++..+|||+|.- +. .++|+.+++
T Consensus 342 ~iVF~~s~~~~~~l~~~L~~~~~~--~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~-----~~--~GiDip~v~ 412 (563)
T 3i5x_A 342 AIIFAPTVKFTSFLCSILKNEFKK--DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV-----GA--RGMDFPNVH 412 (563)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHTT--TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG-----GT--SSCCCTTCC
T ss_pred EEEEcCcHHHHHHHHHHHHHhccC--CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcch-----hh--cCCCcccCC
Confidence 799999999999999999887543 6889999999887655443 33578999999962 22 689999999
Q ss_pred EEEEcc
Q 028826 79 ILVLDE 84 (203)
Q Consensus 79 ~lViDE 84 (203)
++|.-.
T Consensus 413 ~VI~~~ 418 (563)
T 3i5x_A 413 EVLQIG 418 (563)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 998654
No 97
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=95.01 E-value=0.12 Score=40.77 Aligned_cols=69 Identities=14% Similarity=0.181 Sum_probs=52.7
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+||.++|++-+..+...+.+. ++.+..++|+.+..++...+ .++..+|+|+|.- + . .++++.++.
T Consensus 31 ~LVF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~v-----a-~-~Gidi~~v~ 98 (300)
T 3i32_A 31 AMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDV-----A-A-RGLDIPQVD 98 (300)
T ss_dssp EEEECSSHHHHHHHHHHHHTT-----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECST-----T-T-CSTTCCCCS
T ss_pred EEEEECCHHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEech-----h-h-cCcccccee
Confidence 799999999988887777654 78899999998876655533 3467899999942 2 2 578888888
Q ss_pred EEEE
Q 028826 79 ILVL 82 (203)
Q Consensus 79 ~lVi 82 (203)
++|.
T Consensus 99 ~VI~ 102 (300)
T 3i32_A 99 LVVH 102 (300)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7774
No 98
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=94.92 E-value=0.15 Score=43.72 Aligned_cols=75 Identities=13% Similarity=0.222 Sum_probs=58.8
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHH---HHhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKK---IEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~---l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+||+++|++-+..+.+.+++.... ++.+..++|+.+..+.... ..++..+|||+|.- +. .++|+.+++
T Consensus 291 ~iVF~~t~~~~~~l~~~L~~~~~~--~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~-----~~--~GiDip~v~ 361 (579)
T 3sqw_A 291 AIIFAPTVKFTSFLCSILKNEFKK--DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV-----GA--RGMDFPNVH 361 (579)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTT--TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG-----GT--SSCCCTTCC
T ss_pred EEEECCcHHHHHHHHHHHHHhhcC--CCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcch-----hh--cCCCcccCC
Confidence 799999999999999999887543 6889999999886655443 33578999999962 22 578999999
Q ss_pred EEEEcch
Q 028826 79 ILVLDEA 85 (203)
Q Consensus 79 ~lViDEa 85 (203)
++|.-..
T Consensus 362 ~VI~~~~ 368 (579)
T 3sqw_A 362 EVLQIGV 368 (579)
T ss_dssp EEEEESC
T ss_pred EEEEcCC
Confidence 9887553
No 99
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=94.58 E-value=0.33 Score=42.54 Aligned_cols=75 Identities=15% Similarity=0.278 Sum_probs=59.6
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHH---HHhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKK---IEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~---l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+||+++|+.-+..+.+.+.+. ++++..++|+.+..+.... ...+..+|+|||-- + . .++++.+++
T Consensus 448 vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~-----l-~-~GlDip~v~ 515 (661)
T 2d7d_A 448 VLVTTLTKKMSEDLTDYLKEI-----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINL-----L-R-EGLDIPEVS 515 (661)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCC-----C-S-TTCCCTTEE
T ss_pred EEEEECCHHHHHHHHHHHHhc-----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecch-----h-h-CCcccCCCC
Confidence 789999999999888887775 6888889988776655554 33467899999862 2 2 689999999
Q ss_pred EEEEcchhHh
Q 028826 79 ILVLDEADRL 88 (203)
Q Consensus 79 ~lViDEad~l 88 (203)
++|+-++|..
T Consensus 516 lVi~~d~d~~ 525 (661)
T 2d7d_A 516 LVAILDADKE 525 (661)
T ss_dssp EEEETTTTCC
T ss_pred EEEEeCcccc
Confidence 9999998864
No 100
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=94.50 E-value=0.51 Score=41.40 Aligned_cols=75 Identities=12% Similarity=0.165 Sum_probs=59.0
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHH---HHhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKK---IEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~---l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+||.++|+.-+..+.+.+.+. ++++..++|+.+..+.... ...+..+|+|||--- . .++++.+++
T Consensus 442 vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l------~-~GlDip~v~ 509 (664)
T 1c4o_A 442 TLVTVLTVRMAEELTSFLVEH-----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLL------R-EGLDIPEVS 509 (664)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCC------C-TTCCCTTEE
T ss_pred EEEEECCHHHHHHHHHHHHhc-----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChh------h-cCccCCCCC
Confidence 789999999999888887775 6888889988776655544 334678999998521 2 689999999
Q ss_pred EEEEcchhHh
Q 028826 79 ILVLDEADRL 88 (203)
Q Consensus 79 ~lViDEad~l 88 (203)
++|+=++|..
T Consensus 510 lVI~~d~d~~ 519 (664)
T 1c4o_A 510 LVAILDADKE 519 (664)
T ss_dssp EEEETTTTSC
T ss_pred EEEEeCCccc
Confidence 9999888754
No 101
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=94.47 E-value=0.15 Score=43.38 Aligned_cols=69 Identities=14% Similarity=0.203 Sum_probs=53.9
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHH---HHHhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~---~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+||.++|++-+.++.+.+++. ++++..++||.+..+... ...++..+|||+|.. + . .++|+.+++
T Consensus 239 ~IVf~~sr~~~e~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a-----~-~-~GiD~p~v~ 306 (523)
T 1oyw_A 239 GIIYCNSRAKVEDTAARLQSK-----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVA-----F-G-MGINKPNVR 306 (523)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTT-----S-C-TTTCCTTCC
T ss_pred EEEEeCCHHHHHHHHHHHHHC-----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEech-----h-h-CCCCccCcc
Confidence 699999999999888888775 688999999988665444 333577899999972 2 2 478888888
Q ss_pred EEEE
Q 028826 79 ILVL 82 (203)
Q Consensus 79 ~lVi 82 (203)
++|.
T Consensus 307 ~VI~ 310 (523)
T 1oyw_A 307 FVVH 310 (523)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8886
No 102
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=94.44 E-value=0.17 Score=41.01 Aligned_cols=69 Identities=13% Similarity=0.141 Sum_probs=54.2
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHH---HHhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKK---IEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~---l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+||+++|++-+..+.+.+.+. ++++..++|+.+..++... ..++..+|||+|.. + . .++|+.+++
T Consensus 279 ~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~-~-~Gidi~~v~ 346 (410)
T 2j0s_A 279 AVIFCNTKRKVDWLTEKMREA-----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDV-----W-A-RGLDVPQVS 346 (410)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGG-----G-S-SSCCCTTEE
T ss_pred EEEEEcCHHHHHHHHHHHHhC-----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECCh-----h-h-CcCCcccCC
Confidence 689999999999888888774 6788899999876654443 33567899999962 2 2 689999999
Q ss_pred EEEE
Q 028826 79 ILVL 82 (203)
Q Consensus 79 ~lVi 82 (203)
++|.
T Consensus 347 ~Vi~ 350 (410)
T 2j0s_A 347 LIIN 350 (410)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9986
No 103
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=94.41 E-value=0.2 Score=40.46 Aligned_cols=69 Identities=19% Similarity=0.211 Sum_probs=54.8
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+||+++|++-+..+++.+.+. ++++..++|+.+..++...+ .++..+|||+|.- +. .++|+.+++
T Consensus 269 ~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~--~Gidip~~~ 336 (412)
T 3fht_A 269 AMIFCHTRKTASWLAAELSKE-----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNV-----CA--RGIDVEQVS 336 (412)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGG-----GT--SSCCCTTEE
T ss_pred EEEEeCCHHHHHHHHHHHHhC-----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCc-----cc--cCCCccCCC
Confidence 699999999999998888875 67888999998766555433 3467899999962 22 689999999
Q ss_pred EEEE
Q 028826 79 ILVL 82 (203)
Q Consensus 79 ~lVi 82 (203)
++|.
T Consensus 337 ~Vi~ 340 (412)
T 3fht_A 337 VVIN 340 (412)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9885
No 104
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=94.40 E-value=0.74 Score=36.69 Aligned_cols=73 Identities=15% Similarity=0.226 Sum_probs=56.8
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHH---HHhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKK---IEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~---l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+||++++++-+..+++.+++. ++++..++|+.+..++... ..++..+|||+|.- + . .++|+.+++
T Consensus 246 ~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~-~-~Gidip~~~ 313 (395)
T 3pey_A 246 SIIFVATKKTANVLYGKLKSE-----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNV-----L-A-RGIDIPTVS 313 (395)
T ss_dssp EEEECSCHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGG-----G-S-SSCCCTTEE
T ss_pred EEEEeCCHHHHHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECCh-----h-h-cCCCcccCC
Confidence 689999999999888888775 6788899999876655443 33467899999962 2 2 689999999
Q ss_pred EEEEcchh
Q 028826 79 ILVLDEAD 86 (203)
Q Consensus 79 ~lViDEad 86 (203)
++|.-+..
T Consensus 314 ~Vi~~~~p 321 (395)
T 3pey_A 314 MVVNYDLP 321 (395)
T ss_dssp EEEESSCC
T ss_pred EEEEcCCC
Confidence 99976554
No 105
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=94.09 E-value=0.22 Score=40.14 Aligned_cols=70 Identities=6% Similarity=0.091 Sum_probs=54.6
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHH---HHhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKK---IEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~---l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+||++++++-+..+.+.+++. ++.+..++|+.+..++... ..++..+|||+|. .+. .++|+.+++
T Consensus 261 ~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~--~Gidip~~~ 328 (400)
T 1s2m_A 261 AIIFCNSTNRVELLAKKITDL-----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LLT--RGIDIQAVN 328 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CSS--SSCCCTTEE
T ss_pred EEEEEecHHHHHHHHHHHHhc-----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----ccc--cCCCccCCC
Confidence 699999999999998888876 6788899999876655443 3346789999995 222 579999999
Q ss_pred EEEEc
Q 028826 79 ILVLD 83 (203)
Q Consensus 79 ~lViD 83 (203)
++|.-
T Consensus 329 ~Vi~~ 333 (400)
T 1s2m_A 329 VVINF 333 (400)
T ss_dssp EEEES
T ss_pred EEEEe
Confidence 98863
No 106
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=93.81 E-value=0.29 Score=39.25 Aligned_cols=72 Identities=8% Similarity=0.121 Sum_probs=55.7
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHH---HHhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKK---IEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~---l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+||++++++-+..+++.+.+. ++.+..++|+.+..++... ..++..+|||+|.. +. .++|+.+++
T Consensus 253 ~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~~--~Gidi~~~~ 320 (391)
T 1xti_A 253 VVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-----FG--RGMDIERVN 320 (391)
T ss_dssp EEEECSCHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCC-----CS--SCBCCTTEE
T ss_pred EEEEeCcHHHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECCh-----hh--cCCCcccCC
Confidence 699999999999998888774 6788999999876555443 33467899999952 22 579999999
Q ss_pred EEEEcch
Q 028826 79 ILVLDEA 85 (203)
Q Consensus 79 ~lViDEa 85 (203)
++|.-+.
T Consensus 321 ~Vi~~~~ 327 (391)
T 1xti_A 321 IAFNYDM 327 (391)
T ss_dssp EEEESSC
T ss_pred EEEEeCC
Confidence 9987543
No 107
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=93.73 E-value=0.27 Score=42.47 Aligned_cols=69 Identities=12% Similarity=0.133 Sum_probs=53.9
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+||.++|+.-+.++...+++. ++.+..++||.+..++...+ ..+..+|||+|-. + . .++|+.+++
T Consensus 270 ~IVf~~sr~~~e~la~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a-----~-~-~GID~p~V~ 337 (591)
T 2v1x_A 270 GIIYCFSQKDSEQVTVSLQNL-----GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVA-----F-G-MGIDKPDVR 337 (591)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTT-----S-C-TTCCCSCEE
T ss_pred eEEEeCcHHHHHHHHHHHHHC-----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEech-----h-h-cCCCccccc
Confidence 689999999999998888775 78899999998876655433 3467899999952 2 2 467888888
Q ss_pred EEEE
Q 028826 79 ILVL 82 (203)
Q Consensus 79 ~lVi 82 (203)
++|.
T Consensus 338 ~VI~ 341 (591)
T 2v1x_A 338 FVIH 341 (591)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 108
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=92.66 E-value=0.013 Score=42.07 Aligned_cols=71 Identities=14% Similarity=0.189 Sum_probs=51.7
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+||.++|++-+..+.+.+++. ++.+..++|+.+..+....+ .++..+|||+|. .+. .++|+.+++
T Consensus 33 ~iVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~--~Gid~~~~~ 100 (170)
T 2yjt_D 33 SIVFVRKRERVHELANWLREA-----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VAA--RGIDIPDVS 100 (170)
Confidence 689999999998888877765 67888889887655444333 345688999993 222 468888888
Q ss_pred EEEEcc
Q 028826 79 ILVLDE 84 (203)
Q Consensus 79 ~lViDE 84 (203)
++|.-+
T Consensus 101 ~Vi~~~ 106 (170)
T 2yjt_D 101 HVFNFD 106 (170)
Confidence 887633
No 109
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=93.54 E-value=0.13 Score=47.96 Aligned_cols=77 Identities=14% Similarity=0.201 Sum_probs=60.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhCCCccCCCc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v 77 (203)
+++|++|+++-+..+.+.+++. .|+.++..++|+.+..+....+ .++..+|||+|. .+. .++|+.++
T Consensus 814 qvlvf~~~v~~~~~l~~~L~~~---~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~-----v~e--~GiDip~v 883 (1151)
T 2eyq_A 814 QVYYLYNDVENIQKAAERLAEL---VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----IIE--TGIDIPTA 883 (1151)
T ss_dssp EEEEECCCSSCHHHHHHHHHHH---CTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS-----TTG--GGSCCTTE
T ss_pred eEEEEECCHHHHHHHHHHHHHh---CCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC-----cce--eeecccCC
Confidence 3689999999888888887776 4578899999998766554433 357899999996 232 58999999
Q ss_pred cEEEEcchhH
Q 028826 78 VILVLDEADR 87 (203)
Q Consensus 78 ~~lViDEad~ 87 (203)
.++|+..+|.
T Consensus 884 ~~VIi~~~~~ 893 (1151)
T 2eyq_A 884 NTIIIERADH 893 (1151)
T ss_dssp EEEEETTTTS
T ss_pred cEEEEeCCCC
Confidence 9999987764
No 110
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=92.93 E-value=0.21 Score=41.27 Aligned_cols=66 Identities=17% Similarity=0.075 Sum_probs=48.9
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
.+||++||++-+..+++.+++. ++++..++|+. ..+......++..+|||+|.- +. .++|+. +..+
T Consensus 173 ~~lVF~~~~~~~~~l~~~L~~~-----~~~v~~lhg~~-r~~~~~~f~~g~~~vLVaT~v-----~e--~GiDip-~~~V 238 (431)
T 2v6i_A 173 RTVWFVHSIKQGAEIGTCLQKA-----GKKVLYLNRKT-FESEYPKCKSEKWDFVITTDI-----SE--MGANFK-ADRV 238 (431)
T ss_dssp CEEEECSSHHHHHHHHHHHHHT-----TCCEEEESTTT-HHHHTTHHHHSCCSEEEECGG-----GG--TSCCCC-CSEE
T ss_pred CEEEEeCCHHHHHHHHHHHHHc-----CCeEEEeCCcc-HHHHHHhhcCCCCeEEEECch-----HH--cCcccC-CcEE
Confidence 4799999999999988888776 67888888873 333444455678999999962 22 578876 6655
No 111
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=92.84 E-value=0.32 Score=39.77 Aligned_cols=72 Identities=21% Similarity=0.272 Sum_probs=52.0
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEc--------CcchHHHHH---HHHhCCCeEEEeccHHHHHHHHhCC
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVG--------GVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMD 70 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~--------g~~~~~~~~---~l~~~~~~ilV~Tp~~l~~~~~~~~ 70 (203)
+||++++++-+..+.+.+++. ++++..++| +.+..++.. ...++..+|||+|. . +. .
T Consensus 364 ~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~-~----~~--~ 431 (494)
T 1wp9_A 364 IIVFTNYRETAKKIVNELVKD-----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS-V----GE--E 431 (494)
T ss_dssp EEEECSCHHHHHHHHHHHHHT-----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECG-G----GG--G
T ss_pred EEEEEccHHHHHHHHHHHHHc-----CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECC-c----cc--c
Confidence 799999999999888888775 688888998 555443333 33346789999994 2 22 5
Q ss_pred CccCCCccEEEEcch
Q 028826 71 VLDFRNLVILVLDEA 85 (203)
Q Consensus 71 ~~~l~~v~~lViDEa 85 (203)
++|+..++++|+-+.
T Consensus 432 Gldl~~~~~Vi~~d~ 446 (494)
T 1wp9_A 432 GLDVPEVDLVVFYEP 446 (494)
T ss_dssp GGGSTTCCEEEESSC
T ss_pred CCCchhCCEEEEeCC
Confidence 799999999986443
No 112
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=92.37 E-value=0.29 Score=43.71 Aligned_cols=74 Identities=15% Similarity=0.121 Sum_probs=55.4
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhh------cCCCceEEEEEcCcchHHHHHHHH--------hCCCeEEEeccHHHHHHHH
Q 028826 2 GMIISPTRELSAQIYHVAQPFIS------TLPDVKSMLLVGGVEVKADVKKIE--------EEGANLLIGTPGRLYDIME 67 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~------~~~~i~~~~~~~g~~~~~~~~~l~--------~~~~~ilV~Tp~~l~~~~~ 67 (203)
+||++|+++-+.++.+.+.+... ...++.+..++|+.+..++...+. ++...|||+|. .+.
T Consensus 306 iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~-----iae 380 (773)
T 2xau_A 306 ILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN-----IAE 380 (773)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----HHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----HHH
Confidence 69999999999999888876322 224889999999998776655442 23568999996 233
Q ss_pred hCCCccCCCccEEEE
Q 028826 68 RMDVLDFRNLVILVL 82 (203)
Q Consensus 68 ~~~~~~l~~v~~lVi 82 (203)
.++++.++.++|-
T Consensus 381 --~GidIp~v~~VId 393 (773)
T 2xau_A 381 --TSLTIDGIVYVVD 393 (773)
T ss_dssp --HTCCCTTEEEEEE
T ss_pred --hCcCcCCeEEEEe
Confidence 4789999997774
No 113
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=92.25 E-value=0.16 Score=42.16 Aligned_cols=67 Identities=6% Similarity=0.035 Sum_probs=47.0
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
.+||++||++-+.++++.+++. ++++..++|.. ..+......++..+|||+|.- + . ..+|+. ++++
T Consensus 179 ~~lVF~~s~~~a~~l~~~L~~~-----~~~v~~lhg~~-R~~~~~~F~~g~~~vLVaT~v-----~-e-~GiDip-v~~V 244 (440)
T 1yks_A 179 PTAWFLPSIRAANVMAASLRKA-----GKSVVVLNRKT-FEREYPTIKQKKPDFILATDI-----A-E-MGANLC-VERV 244 (440)
T ss_dssp CEEEECSCHHHHHHHHHHHHHT-----TCCEEECCSSS-CC--------CCCSEEEESSS-----T-T-CCTTCC-CSEE
T ss_pred CEEEEeCCHHHHHHHHHHHHHc-----CCCEEEecchh-HHHHHhhhcCCCceEEEECCh-----h-h-eeeccC-ceEE
Confidence 4799999999999998888775 67888888843 333444445678999999962 2 2 578988 8887
Q ss_pred E
Q 028826 81 V 81 (203)
Q Consensus 81 V 81 (203)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 7
No 114
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=92.15 E-value=0.55 Score=39.34 Aligned_cols=73 Identities=14% Similarity=0.166 Sum_probs=51.3
Q ss_pred EEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHH---HHHhCCCeEEEeccHHHHHHHHhCCCccCCCccE
Q 028826 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVI 79 (203)
Q Consensus 3 lil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~---~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~ 79 (203)
+|+....+-+..+.+.+.+. +.++..++|+.+..+... ...++..+|+|+|+..+. .++|+.++++
T Consensus 351 ~ivf~~~~~~~~l~~~L~~~-----~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~------~GiDip~v~~ 419 (510)
T 2oca_A 351 FVMFKHVSHGKAIFDLIKNE-----YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFS------TGISVKNLHH 419 (510)
T ss_dssp EEEESSHHHHHHHHHHHHTT-----CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHH------HSCCCCSEEE
T ss_pred EEEEecHHHHHHHHHHHHHc-----CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhh------cccccccCcE
Confidence 45555566565555555543 358888999887655443 233577899999976665 4789999999
Q ss_pred EEEcchh
Q 028826 80 LVLDEAD 86 (203)
Q Consensus 80 lViDEad 86 (203)
+|+...+
T Consensus 420 vi~~~~~ 426 (510)
T 2oca_A 420 VVLAHGV 426 (510)
T ss_dssp EEESSCC
T ss_pred EEEeCCC
Confidence 9998876
No 115
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=91.85 E-value=0.64 Score=40.87 Aligned_cols=74 Identities=11% Similarity=0.182 Sum_probs=55.1
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHH---HHHHHHh--CCCeEEEeccHHHHHHHHhCCCccCCC
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKA---DVKKIEE--EGANLLIGTPGRLYDIMERMDVLDFRN 76 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~---~~~~l~~--~~~~ilV~Tp~~l~~~~~~~~~~~l~~ 76 (203)
.+|+++|+.-+.++.+.+++. ++++..++|+.+..+ ..+...+ +..+|||+|-- + . .++++ +
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~-----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi-----~-e-~GlDi-~ 389 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIR-----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDA-----I-G-MGLNL-S 389 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGG-----G-G-SSCCC-C
T ss_pred CEEEEcCHHHHHHHHHHHHhc-----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcH-----H-H-CCcCc-C
Confidence 478899998888777777763 688999999988763 3333433 56899999972 2 2 68999 9
Q ss_pred ccEEEEcchhHh
Q 028826 77 LVILVLDEADRL 88 (203)
Q Consensus 77 v~~lViDEad~l 88 (203)
++++|.-...+.
T Consensus 390 v~~VI~~~~~k~ 401 (677)
T 3rc3_A 390 IRRIIFYSLIKP 401 (677)
T ss_dssp BSEEEESCSBC-
T ss_pred ccEEEECCcccc
Confidence 999998777553
No 116
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=91.11 E-value=0.21 Score=40.35 Aligned_cols=69 Identities=14% Similarity=0.174 Sum_probs=46.3
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+||++++++-+..+.+.+.+. ++++..++|+.+..++...+ .++..+|||+|.- +. .++|+.+++
T Consensus 283 ~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~--~Gidip~v~ 350 (414)
T 3eiq_A 283 AVIFINTRRKVDWLTEKMHAR-----DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL-----LA--RGIDVQQVS 350 (414)
T ss_dssp CEEECSCHHHHHHHHHHHHTT-----TCCCEEC---CHHHHHHHHHHHHSCC---CEEECSS-----CC----CCGGGCS
T ss_pred EEEEeCCHHHHHHHHHHHHhc-----CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCc-----cc--cCCCccCCC
Confidence 689999999999888877664 67888999998766555433 2456889999962 22 578888999
Q ss_pred EEEE
Q 028826 79 ILVL 82 (203)
Q Consensus 79 ~lVi 82 (203)
++|.
T Consensus 351 ~Vi~ 354 (414)
T 3eiq_A 351 LVIN 354 (414)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 8875
No 117
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=90.79 E-value=0.88 Score=39.55 Aligned_cols=66 Identities=14% Similarity=0.144 Sum_probs=49.3
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
+||+++|++-+..+.+.+++. ++++..++|. ...+..+...++..+|||+|. .+. ..+|+. ++++|
T Consensus 358 ~LVF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~-~R~~~l~~F~~g~~~VLVaTd-----v~~--rGiDi~-v~~VI 423 (618)
T 2whx_A 358 TVWFVPSIKAGNDIANCLRKS-----GKRVIQLSRK-TFDTEYPKTKLTDWDFVVTTD-----ISE--MGANFR-AGRVI 423 (618)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEECTT-THHHHTTHHHHSCCSEEEECG-----GGG--TTCCCC-CSEEE
T ss_pred EEEEECChhHHHHHHHHHHHc-----CCcEEEEChH-HHHHHHHhhcCCCcEEEEECc-----HHH--cCcccC-ceEEE
Confidence 799999999999988888775 6788888875 333344455567899999997 222 578884 87764
No 118
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=90.76 E-value=0.31 Score=39.70 Aligned_cols=69 Identities=19% Similarity=0.227 Sum_probs=50.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEE-EEEcCcchHHHHHHHHhCCCeEEEe----ccHHHHHHHHhCCCccCC
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSM-LLVGGVEVKADVKKIEEEGANLLIG----TPGRLYDIMERMDVLDFR 75 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~-~~~~g~~~~~~~~~l~~~~~~ilV~----Tp~~l~~~~~~~~~~~l~ 75 (203)
.+||+++|++-|..+.+.+++. ++++. .++|+ . .+ .....++..+|||+ |. .+ . .++|+.
T Consensus 254 ~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~h~~-~-r~-~~~f~~g~~~vLvat~s~T~-~~-----~-~GiDip 318 (414)
T 3oiy_A 254 GILIFAQTEEEGKELYEYLKRF-----KFNVGETWSEF-E-KN-FEDFKVGKINILIGVQAYYG-KL-----T-RGVDLP 318 (414)
T ss_dssp SEEEEESSHHHHHHHHHHHHHT-----TCCEEESSSCH-H-HH-HHHHHTTSCSEEEEECCTTC-CC-----C-CCCCCT
T ss_pred CEEEEECCHHHHHHHHHHHHHc-----CCceehhhcCc-c-hH-HHHHhCCCCeEEEEecCcCc-hh-----h-ccCccc
Confidence 3799999999999888888775 67776 55554 2 22 55555678999999 54 22 1 679999
Q ss_pred C-ccEEEEcc
Q 028826 76 N-LVILVLDE 84 (203)
Q Consensus 76 ~-v~~lViDE 84 (203)
+ ++++|.-+
T Consensus 319 ~~v~~VI~~~ 328 (414)
T 3oiy_A 319 ERIKYVIFWG 328 (414)
T ss_dssp TTCCEEEEES
T ss_pred cccCEEEEEC
Confidence 9 99988633
No 119
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=90.70 E-value=0.65 Score=40.81 Aligned_cols=67 Identities=13% Similarity=0.088 Sum_probs=49.1
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
.+||++||++-+.++++.+++. ++++..++|. ...+......++..+|||+|-- +. ..+|+. ++++
T Consensus 412 ~~lVF~~s~~~~e~la~~L~~~-----g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaTdv-----~e--~GIDip-v~~V 477 (673)
T 2wv9_A 412 KTVWFVASVKMSNEIAQCLQRA-----GKRVIQLNRK-SYDTEYPKCKNGDWDFVITTDI-----SE--MGANFG-ASRV 477 (673)
T ss_dssp CEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSS-SHHHHGGGGGTCCCSEEEECGG-----GG--TTCCCC-CSEE
T ss_pred CEEEEECCHHHHHHHHHHHHhC-----CCeEEEeChH-HHHHHHHHHHCCCceEEEECch-----hh--cceeeC-CcEE
Confidence 4799999999999888887765 6888888884 3333333344577899999952 22 578888 8887
Q ss_pred E
Q 028826 81 V 81 (203)
Q Consensus 81 V 81 (203)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 6
No 120
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=89.72 E-value=0.51 Score=41.39 Aligned_cols=63 Identities=8% Similarity=0.135 Sum_probs=48.6
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
+||++||++-+.++.+.+++. ++++..++|+.+..+. .+++.+|||+|. .+. ..+|+. ++++|
T Consensus 399 vLVFv~Tr~~ae~la~~L~~~-----g~~v~~lHG~l~q~er----~~~~~~VLVATd-----Vae--rGIDId-V~~VI 461 (666)
T 3o8b_A 399 HLIFCHSKKKCDELAAKLSGL-----GINAVAYYRGLDVSVI----PTIGDVVVVATD-----ALM--TGYTGD-FDSVI 461 (666)
T ss_dssp EEEECSCHHHHHHHHHHHHTT-----TCCEEEECTTSCGGGS----CSSSCEEEEECT-----THH--HHCCCC-BSEEE
T ss_pred EEEEeCCHHHHHHHHHHHHhC-----CCcEEEecCCCCHHHH----HhCCCcEEEECC-----hHH--ccCCCC-CcEEE
Confidence 799999999999888888764 7889999999876542 245679999996 233 367774 88777
No 121
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=89.60 E-value=1 Score=35.06 Aligned_cols=67 Identities=18% Similarity=0.225 Sum_probs=47.6
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+||++++++-+..+.+.++ ++..++|+.+..++...+ .++..+|+|+|. .+. .++|+.+++
T Consensus 223 ~lvf~~~~~~~~~l~~~l~---------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~--~Gid~~~~~ 286 (337)
T 2z0m_A 223 VIVFVRTRNRVAKLVRLFD---------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD-----VAS--RGLDIPLVE 286 (337)
T ss_dssp EEEECSCHHHHHHHHTTCT---------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH-----HHH--TTCCCCCBS
T ss_pred EEEEEcCHHHHHHHHHHhh---------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC-----ccc--cCCCccCCC
Confidence 6899999988776554332 456778887765554433 346789999995 333 579999999
Q ss_pred EEEEcc
Q 028826 79 ILVLDE 84 (203)
Q Consensus 79 ~lViDE 84 (203)
++|.-.
T Consensus 287 ~Vi~~~ 292 (337)
T 2z0m_A 287 KVINFD 292 (337)
T ss_dssp EEEESS
T ss_pred EEEEec
Confidence 998743
No 122
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=88.97 E-value=0.26 Score=42.89 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=31.7
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGV 38 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~ 38 (203)
++|++||++|+.|+.+++.++.... ++++..+.|+.
T Consensus 54 vli~t~T~~l~~Qi~~el~~l~~~~-~~~~~~l~gr~ 89 (620)
T 4a15_A 54 VLYLVRTNSQEEQVIKELRSLSSTM-KIRAIPMQGRV 89 (620)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHS-CCCEEECCCHH
T ss_pred EEEECCCHHHHHHHHHHHHHHhhcc-CeEEEEEECCC
Confidence 6899999999999999999998876 78888877754
No 123
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=88.59 E-value=0.084 Score=44.05 Aligned_cols=69 Identities=19% Similarity=0.241 Sum_probs=0.0
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+||++||++-+..++..+.+. +.++..++|+.+..++...+ .++..+|||+|. .+. .++|+.++.
T Consensus 336 ~lvF~~s~~~~~~l~~~L~~~-----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~-----~~~--~GlDip~v~ 403 (479)
T 3fmp_B 336 AMIFCHTRKTASWLAAELSKE-----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCA--RGIDVEQVS 403 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEeCcHHHHHHHHHHHHhC-----CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc-----ccc--cCCccccCC
Confidence 689999999998888877765 67788889987765544332 346789999995 333 578999999
Q ss_pred EEEE
Q 028826 79 ILVL 82 (203)
Q Consensus 79 ~lVi 82 (203)
++|.
T Consensus 404 ~VI~ 407 (479)
T 3fmp_B 404 VVIN 407 (479)
T ss_dssp ----
T ss_pred EEEE
Confidence 8873
No 124
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=88.54 E-value=0.6 Score=38.77 Aligned_cols=66 Identities=14% Similarity=0.129 Sum_probs=48.8
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
+||++||++-|.++++.+++. ++++..++|... .+..+...++..+|||+|. .+. .++|+.+ .++|
T Consensus 191 ~lVF~~s~~~a~~l~~~L~~~-----g~~~~~lh~~~~-~~~~~~f~~g~~~vLVaT~-----v~~--~GiDip~-~~VI 256 (451)
T 2jlq_A 191 TVWFVPSIKAGNDIANCLRKS-----GKRVIQLSRKTF-DTEYPKTKLTDWDFVVTTD-----ISE--MGANFRA-GRVI 256 (451)
T ss_dssp EEEECSSHHHHHHHHHHHHTT-----TCCEEEECTTTH-HHHGGGGGSSCCSEEEECG-----GGG--SSCCCCC-SEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHc-----CCeEEECCHHHH-HHHHHhhccCCceEEEECC-----HHH--hCcCCCC-CEEE
Confidence 799999999999888888764 678888887654 3333344457899999996 222 5788888 6665
No 125
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=88.11 E-value=1.4 Score=36.76 Aligned_cols=66 Identities=17% Similarity=0.116 Sum_probs=37.2
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
.+|++||++++..+.+.+.+.+ .. .....-|.|-++++. +. ........+.+|
T Consensus 187 ~lVlTpT~~aa~~l~~kl~~~~-----~~-------------------~~~~~~V~T~dsfL~--~~-~~~~~~~~d~li 239 (446)
T 3vkw_A 187 DLILVPGRQAAEMIRRRANASG-----II-------------------VATKDNVRTVDSFLM--NY-GKGARCQFKRLF 239 (446)
T ss_dssp CEEEESCHHHHHHHHHHHTTTS-----CC-------------------CCCTTTEEEHHHHHH--TT-TSSCCCCCSEEE
T ss_pred eEEEeCCHHHHHHHHHHhhhcC-----cc-------------------ccccceEEEeHHhhc--CC-CCCCCCcCCEEE
Confidence 3799999999988777664321 00 011122455555431 11 222233588999
Q ss_pred EcchhHhhhhchHH
Q 028826 82 LDEADRLLDMGFQK 95 (203)
Q Consensus 82 iDEad~l~~~~~~~ 95 (203)
|||+- |++.++..
T Consensus 240 iDE~s-m~~~~~l~ 252 (446)
T 3vkw_A 240 IDEGL-MLHTGCVN 252 (446)
T ss_dssp EETGG-GSCHHHHH
T ss_pred EeCcc-cCCHHHHH
Confidence 99996 55655433
No 126
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=86.32 E-value=1.4 Score=36.86 Aligned_cols=73 Identities=19% Similarity=0.247 Sum_probs=45.9
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEc--------CcchHHHHHHH---Hh-CCCeEEEeccHHHHHHHHhC
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVG--------GVEVKADVKKI---EE-EGANLLIGTPGRLYDIMERM 69 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~--------g~~~~~~~~~l---~~-~~~~ilV~Tp~~l~~~~~~~ 69 (203)
+||.+++++-+..+.+.+++..... ++++..++| +.+..++...+ .+ +..+|||+|.- + .
T Consensus 392 ~lVF~~~~~~~~~l~~~L~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~-----~-~- 463 (555)
T 3tbk_A 392 TILFVKTRALVDALKKWIEENPALS-FLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSV-----A-D- 463 (555)
T ss_dssp EEEECSSHHHHHHHHHHHHHCGGGT-TCCEEECCC--------------------------CCSEEEECCC-----T-T-
T ss_pred EEEEeCcHHHHHHHHHHHhhCcCcC-ceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcch-----h-h-
Confidence 7999999999999999998874332 455555555 54444433322 23 56799999962 2 2
Q ss_pred CCccCCCccEEEE
Q 028826 70 DVLDFRNLVILVL 82 (203)
Q Consensus 70 ~~~~l~~v~~lVi 82 (203)
.++|+.+++++|.
T Consensus 464 ~GlDlp~v~~VI~ 476 (555)
T 3tbk_A 464 EGIDIAECNLVIL 476 (555)
T ss_dssp CCEETTSCSEEEE
T ss_pred cCCccccCCEEEE
Confidence 6799999999986
No 127
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=86.25 E-value=0.42 Score=41.74 Aligned_cols=74 Identities=24% Similarity=0.302 Sum_probs=48.0
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhc-CCCceEEEEEcC--------cchHHHHHHH---HhCCCeEEEeccHHHHHHHHhC
Q 028826 2 GMIISPTRELSAQIYHVAQPFIST-LPDVKSMLLVGG--------VEVKADVKKI---EEEGANLLIGTPGRLYDIMERM 69 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~-~~~i~~~~~~~g--------~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~ 69 (203)
+||.+++++.+..+.+.+++.... ..++++..++|+ .+..++...+ .++..+|||+|- .+.
T Consensus 403 ~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~-----~~~-- 475 (699)
T 4gl2_A 403 GIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT-----VAE-- 475 (699)
T ss_dssp EEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC-----SCC--
T ss_pred EEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc-----ccc--
Confidence 799999999999999988874111 116888899998 6666555543 236789999995 222
Q ss_pred CCccCCCccEEEE
Q 028826 70 DVLDFRNLVILVL 82 (203)
Q Consensus 70 ~~~~l~~v~~lVi 82 (203)
.++|+.+++++|.
T Consensus 476 ~GIDip~v~~VI~ 488 (699)
T 4gl2_A 476 EGLDIKECNIVIR 488 (699)
T ss_dssp TTSCCCSCCCCEE
T ss_pred cCCccccCCEEEE
Confidence 4677778877774
No 128
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=85.96 E-value=1.1 Score=41.64 Aligned_cols=76 Identities=16% Similarity=0.198 Sum_probs=53.6
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEE-EEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCC-cc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSM-LLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRN-LV 78 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~-~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~-v~ 78 (203)
.+||++||++-+..+...+++. ++++. .++|. ..+ .....++..+|||+|+.. .+.+. .++|+.+ ++
T Consensus 311 ~~LVF~~s~~~a~~l~~~L~~~-----g~~~~~~lhg~--rr~-l~~F~~G~~~VLVatas~-Tdvla--rGIDip~~V~ 379 (1104)
T 4ddu_A 311 GILIFAQTEEEGKELYEYLKRF-----KFNVGETWSEF--EKN-FEDFKVGKINILIGVQAY-YGKLT--RGVDLPERIK 379 (1104)
T ss_dssp SEEEEESSSHHHHHHHHHHHHT-----TCCEEESSSSH--HHH-HHHHHHTSCSEEEEETTT-HHHHC--CSCCCTTTCC
T ss_pred CEEEEECcHHHHHHHHHHHHhC-----CCCeeeEecCc--HHH-HHHHHCCCCCEEEEecCC-CCeeE--ecCcCCCCCC
Confidence 4799999999999998888775 67777 66663 223 555557889999994210 01222 6899999 99
Q ss_pred EEEEcchhH
Q 028826 79 ILVLDEADR 87 (203)
Q Consensus 79 ~lViDEad~ 87 (203)
++|.=++-.
T Consensus 380 ~VI~~d~P~ 388 (1104)
T 4ddu_A 380 YVIFWGTPS 388 (1104)
T ss_dssp EEEEESCCE
T ss_pred EEEEECCCC
Confidence 998765443
No 129
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=85.89 E-value=1.1 Score=41.08 Aligned_cols=74 Identities=14% Similarity=0.173 Sum_probs=54.9
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH---HhCC--CeEEEeccHHHHHHHHhCCCccCCC
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEG--ANLLIGTPGRLYDIMERMDVLDFRN 76 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l---~~~~--~~ilV~Tp~~l~~~~~~~~~~~l~~ 76 (203)
+||++++++-+..+...+.+. . ++++..++|+.+..+....+ .++. ++|||+|. .+ . .++|+.+
T Consensus 506 ~iVF~~~~~~~~~l~~~L~~~---~-g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~-v~-----~-~GlDl~~ 574 (968)
T 3dmq_A 506 VLVICAKAATALQLEQVLRER---E-GIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSE-IG-----S-EGRNFQF 574 (968)
T ss_dssp CCEECSSTHHHHHHHHHHHTT---T-CCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSC-CT-----T-CSSCCTT
T ss_pred EEEEeCcHHHHHHHHHHHHHH---c-CCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecc-hh-----h-cCCCccc
Confidence 689999999888887777642 2 78899999998765544433 2344 99999993 32 2 6899999
Q ss_pred ccEEEEcchh
Q 028826 77 LVILVLDEAD 86 (203)
Q Consensus 77 v~~lViDEad 86 (203)
+..+|+-+.+
T Consensus 575 ~~~VI~~d~p 584 (968)
T 3dmq_A 575 ASHMVMFDLP 584 (968)
T ss_dssp CCEEECSSCC
T ss_pred CcEEEEecCC
Confidence 9999986654
No 130
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=84.52 E-value=1.2 Score=41.23 Aligned_cols=72 Identities=25% Similarity=0.272 Sum_probs=50.3
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEec---cHHHHHHHHhCCCccCCCc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGT---PGRLYDIMERMDVLDFRNL 77 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~T---p~~l~~~~~~~~~~~l~~v 77 (203)
.+||+++|++-|..+.+.+++. +++..++|+.. +..+...++..+|||+| .+-+ . .++|+.++
T Consensus 277 ~~LVF~~t~~~a~~l~~~L~~~------~~v~~lhg~~~--~~l~~F~~G~~~VLVaTas~Tdv~----~--rGIDip~V 342 (1054)
T 1gku_B 277 GGIIYARTGEEAEEIYESLKNK------FRIGIVTATKK--GDYEKFVEGEIDHLIGTAHYYGTL----V--RGLDLPER 342 (1054)
T ss_dssp CEEEEESSHHHHHHHHHTTTTS------SCEEECTTSSS--HHHHHHHHTSCSEEEEECC------------CCSCCTTT
T ss_pred CEEEEEcCHHHHHHHHHHHhhc------cCeeEEeccHH--HHHHHHHcCCCcEEEEecCCCCee----E--eccccCCc
Confidence 3799999999888776655543 67888888874 33444556789999995 2222 2 68999995
Q ss_pred -cEEEEcchh
Q 028826 78 -VILVLDEAD 86 (203)
Q Consensus 78 -~~lViDEad 86 (203)
+++|.-.+.
T Consensus 343 I~~VI~~~~P 352 (1054)
T 1gku_B 343 IRFAVFVGCP 352 (1054)
T ss_dssp CCEEEEESCC
T ss_pred ccEEEEeCCC
Confidence 998876555
No 131
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=82.90 E-value=15 Score=28.64 Aligned_cols=89 Identities=11% Similarity=0.129 Sum_probs=48.5
Q ss_pred ceEEEEEcCcch--HHHHHHHHh-------CCCeEEEeccHH-------HHHHHHhC-CCccCCCccEEEEcchhHhhhh
Q 028826 29 VKSMLLVGGVEV--KADVKKIEE-------EGANLLIGTPGR-------LYDIMERM-DVLDFRNLVILVLDEADRLLDM 91 (203)
Q Consensus 29 i~~~~~~~g~~~--~~~~~~l~~-------~~~~ilV~Tp~~-------l~~~~~~~-~~~~l~~v~~lViDEad~l~~~ 91 (203)
.....++|-... ..-...+.+ ..++++.-.|+. +.+++... ......+-+++|+||||.|-..
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~~ 97 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQ 97 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCHH
Confidence 567777775432 222333322 257888877641 33444331 1223456899999999998544
Q ss_pred chHHHHHHHHHhCCCCCcEEEEeeecCh
Q 028826 92 GFQKQISYIISRLPKLRRTGLFSATQTE 119 (203)
Q Consensus 92 ~~~~~~~~il~~~~~~~q~i~~SAT~~~ 119 (203)
. ...+...++.-|...-+++. ++-+.
T Consensus 98 a-~naLLk~LEep~~~t~fIl~-t~~~~ 123 (305)
T 2gno_A 98 A-ANAFLKALEEPPEYAVIVLN-TRRWH 123 (305)
T ss_dssp H-HHHTHHHHHSCCTTEEEEEE-ESCGG
T ss_pred H-HHHHHHHHhCCCCCeEEEEE-ECChH
Confidence 3 33455555555544444444 34443
No 132
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=82.87 E-value=0.24 Score=39.68 Aligned_cols=69 Identities=10% Similarity=0.176 Sum_probs=0.0
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHH---HhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l---~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+||++++++-+..+.+.+++. ++.+..++|+.+..++...+ .++..+|+|+|. .+. .++|+.+++
T Consensus 262 ~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~--~Gldi~~~~ 329 (394)
T 1fuu_A 262 AVIFCNTRRKVEELTTKLRND-----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLA--RGIDVQQVS 329 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEECCHHHHHHHHHHHHHc-----CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECC-----hhh--cCCCcccCC
Confidence 689999999888887777664 67788888887655444322 345678999985 232 478888888
Q ss_pred EEEE
Q 028826 79 ILVL 82 (203)
Q Consensus 79 ~lVi 82 (203)
++|.
T Consensus 330 ~Vi~ 333 (394)
T 1fuu_A 330 LVIN 333 (394)
T ss_dssp ----
T ss_pred EEEE
Confidence 8875
No 133
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=82.67 E-value=0.31 Score=41.18 Aligned_cols=70 Identities=13% Similarity=0.185 Sum_probs=46.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHH---HHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCc
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKA---DVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~---~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v 77 (203)
.+||++++++-|..+...+.+. +.++..++|+....+ ..+...++..+|||+|. ++. .++|+.++
T Consensus 359 ~~LVF~~s~~~a~~l~~~L~~~-----~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~-----~l~--~GiDip~v 426 (508)
T 3fho_A 359 QSIIFCKKKDTAEEIARRMTAD-----GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTN-----VIA--RGIDVSQV 426 (508)
T ss_dssp CEEEBCSSTTTTTHHHHHHTTT-----TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC------------CCCTTC
T ss_pred cEEEEECCHHHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCC-----hhh--cCCCccCC
Confidence 3789999999998888777653 677888888765432 23344457789999997 333 57999999
Q ss_pred cEEEE
Q 028826 78 VILVL 82 (203)
Q Consensus 78 ~~lVi 82 (203)
+++|.
T Consensus 427 ~~VI~ 431 (508)
T 3fho_A 427 NLVVN 431 (508)
T ss_dssp CEEEC
T ss_pred CEEEE
Confidence 99885
No 134
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=82.65 E-value=6.5 Score=36.35 Aligned_cols=36 Identities=8% Similarity=0.119 Sum_probs=28.0
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhh-------cCCCceEEEEEcC
Q 028826 2 GMIISPTRELSAQIYHVAQPFIS-------TLPDVKSMLLVGG 37 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~-------~~~~i~~~~~~~g 37 (203)
|+|+|+|++-|...++.+.++.+ ...++++..+++|
T Consensus 540 amVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~ 582 (1038)
T 2w00_A 540 AMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSF 582 (1038)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCC
T ss_pred EEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeC
Confidence 79999999999999999999863 2235777666554
No 135
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=82.19 E-value=0.66 Score=40.49 Aligned_cols=76 Identities=20% Similarity=0.234 Sum_probs=42.9
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEc--------CcchHHHHHHH---Hh-CCCeEEEeccHHHHHHHHhC
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVG--------GVEVKADVKKI---EE-EGANLLIGTPGRLYDIMERM 69 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~--------g~~~~~~~~~l---~~-~~~~ilV~Tp~~l~~~~~~~ 69 (203)
+||.+++++-+..+.+.+++.... +++++..++| |.+..++...+ .+ +..+|||+|-- + .
T Consensus 401 ~IIF~~~~~~~~~l~~~L~~~~~~-~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v-----~-~- 472 (696)
T 2ykg_A 401 TILFVKTRALVDALKNWIEGNPKL-SFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSV-----A-D- 472 (696)
T ss_dssp EEEECSCHHHHHHHHHHHHHCTTC-CSCCEEC-----------------------------CCSCSEEEES-----S-C-
T ss_pred EEEEeCcHHHHHHHHHHHHhCCCc-cccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEech-----h-h-
Confidence 799999999999999998886422 2478888865 65554444433 23 56799999942 2 2
Q ss_pred CCccCCCccEEEEcch
Q 028826 70 DVLDFRNLVILVLDEA 85 (203)
Q Consensus 70 ~~~~l~~v~~lViDEa 85 (203)
.++|+.+++++|.-+.
T Consensus 473 ~GiDip~v~~VI~~d~ 488 (696)
T 2ykg_A 473 EGIDIAQCNLVILYEY 488 (696)
T ss_dssp CC---CCCSEEEEESC
T ss_pred cCCcCccCCEEEEeCC
Confidence 5789999999886443
No 136
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=82.08 E-value=7.8 Score=28.16 Aligned_cols=99 Identities=14% Similarity=0.124 Sum_probs=47.9
Q ss_pred HHHHHhhhcCCCceEEEEEcC--cchHHHHHHH----HhCCCeEEEeccHHHHHHHHhCCCccCCCccEEEEcchhHhhh
Q 028826 17 HVAQPFISTLPDVKSMLLVGG--VEVKADVKKI----EEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLD 90 (203)
Q Consensus 17 ~~~~~l~~~~~~i~~~~~~~g--~~~~~~~~~l----~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lViDEad~l~~ 90 (203)
..++.+.... ..+...++|. .....-.+.+ ...+..++..+...+...+.. ..-.+.+-.++++||+|.+..
T Consensus 41 ~~l~~~~~~~-~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~vliiDe~~~~~~ 118 (242)
T 3bos_A 41 GALKSAASGD-GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTA-LLEGLEQFDLICIDDVDAVAG 118 (242)
T ss_dssp HHHHHHHHTC-SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGG-GGTTGGGSSEEEEETGGGGTT
T ss_pred HHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH-HHHhccCCCEEEEeccccccC
Confidence 3444443332 3456677763 3333333322 223456666666554432221 111235568999999998854
Q ss_pred hc-hHHHHHHHHHhCCC-CCcEEEEeeec
Q 028826 91 MG-FQKQISYIISRLPK-LRRTGLFSATQ 117 (203)
Q Consensus 91 ~~-~~~~~~~il~~~~~-~~q~i~~SAT~ 117 (203)
.. ....+..++..... ....++++++.
T Consensus 119 ~~~~~~~l~~~l~~~~~~~~~~ii~~~~~ 147 (242)
T 3bos_A 119 HPLWEEAIFDLYNRVAEQKRGSLIVSASA 147 (242)
T ss_dssp CHHHHHHHHHHHHHHHHHCSCEEEEEESS
T ss_pred CHHHHHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 32 24444455444322 23324444443
No 137
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=81.76 E-value=0.77 Score=38.23 Aligned_cols=67 Identities=13% Similarity=0.060 Sum_probs=45.8
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEE
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~l 80 (203)
.+||++||++-+..+.+.+++. ++++..++|... ........++..+|||+|-- +. .++|+.+ +++
T Consensus 192 ~~LVF~~s~~~~~~l~~~L~~~-----g~~v~~lh~~~R-~~~~~~f~~g~~~iLVaT~v-----~~--~GiDip~-~~V 257 (459)
T 2z83_A 192 KTVWFVASVKMGNEIAMCLQRA-----GKKVIQLNRKSY-DTEYPKCKNGDWDFVITTDI-----SE--MGANFGA-SRV 257 (459)
T ss_dssp CEEEECSCHHHHHHHHHHHHHT-----TCCEEEESTTCC-CCCGGGSSSCCCSEEEESSC-----C-----CCCSC-SEE
T ss_pred CEEEEeCChHHHHHHHHHHHhc-----CCcEEecCHHHH-HHHHhhccCCCceEEEECCh-----HH--hCeecCC-CEE
Confidence 3799999999999998888775 678888887532 22222333467899999962 22 4788887 665
Q ss_pred E
Q 028826 81 V 81 (203)
Q Consensus 81 V 81 (203)
|
T Consensus 258 I 258 (459)
T 2z83_A 258 I 258 (459)
T ss_dssp E
T ss_pred E
Confidence 5
No 138
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=81.59 E-value=5.2 Score=35.15 Aligned_cols=74 Identities=9% Similarity=0.098 Sum_probs=51.4
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcC-------------C---------------CceEEEEEcCcchHHHHHH---HHh
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTL-------------P---------------DVKSMLLVGGVEVKADVKK---IEE 49 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~-------------~---------------~i~~~~~~~g~~~~~~~~~---l~~ 49 (203)
.+||++|||+-+..+...+.+..... . ...+..++||.+..++... ..+
T Consensus 239 ~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~ 318 (720)
T 2zj8_A 239 GALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRK 318 (720)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHT
T ss_pred CEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHC
Confidence 47999999999998888887643210 0 1248888999887665542 334
Q ss_pred CCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 50 EGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 50 ~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
+..+|||+|.-- . .++|+..+.++|
T Consensus 319 g~~~vlvaT~~l-----~--~Gvdip~~~~VI 343 (720)
T 2zj8_A 319 GIIKAVVATPTL-----S--AGINTPAFRVII 343 (720)
T ss_dssp TSSCEEEECSTT-----G--GGCCCCBSEEEE
T ss_pred CCCeEEEECcHh-----h--ccCCCCceEEEE
Confidence 678999999622 2 478888887644
No 139
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=80.64 E-value=6.7 Score=34.33 Aligned_cols=75 Identities=7% Similarity=0.100 Sum_probs=52.5
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhc--CC-----------------------------CceEEEEEcCcchHHHHHHH--
Q 028826 1 MGMIISPTRELSAQIYHVAQPFIST--LP-----------------------------DVKSMLLVGGVEVKADVKKI-- 47 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~--~~-----------------------------~i~~~~~~~g~~~~~~~~~l-- 47 (203)
.+||++|+++-+.++...+.+.... ++ +..+..++||.+..++....
T Consensus 254 ~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~ 333 (715)
T 2va8_A 254 QVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEG 333 (715)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHH
Confidence 3799999999999888888764321 00 13478899998876555432
Q ss_pred -HhCCCeEEEeccHHHHHHHHhCCCccCCCccEEEE
Q 028826 48 -EEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVL 82 (203)
Q Consensus 48 -~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lVi 82 (203)
.++..+|||+|.-- . .++++..+.++|-
T Consensus 334 f~~g~~~vlvaT~~l-----~--~Gidip~~~~VI~ 362 (715)
T 2va8_A 334 FRQRKIKVIVATPTL-----A--AGVNLPARTVIIG 362 (715)
T ss_dssp HHTTCSCEEEECGGG-----G--GSSCCCBSEEEEC
T ss_pred HHcCCCeEEEEChHH-----h--cccCCCceEEEEe
Confidence 34678999999622 2 5788888887653
No 140
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=79.63 E-value=9.1 Score=29.68 Aligned_cols=41 Identities=15% Similarity=0.088 Sum_probs=27.7
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEee
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SA 115 (203)
.+-+++++||+|.+........+..++...+...++|+.+.
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n 144 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITAN 144 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEES
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 47889999999998623345556666666655666666443
No 141
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=78.61 E-value=1.7 Score=31.13 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=33.4
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEee
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SA 115 (203)
+.-.++++||.+.-+|......+..++..+....|+++.|-
T Consensus 85 ~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith 125 (173)
T 3kta_B 85 KPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITL 125 (173)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECS
T ss_pred CCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEe
Confidence 34579999999999988888888888888877788877764
No 142
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=78.01 E-value=2.1 Score=33.73 Aligned_cols=42 Identities=14% Similarity=0.195 Sum_probs=30.0
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeec
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~ 117 (203)
.+-+++++||+|. ++......+..++...+....+++.|...
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 4677999999999 56656677777888776666666665443
No 143
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=77.98 E-value=2 Score=39.17 Aligned_cols=75 Identities=19% Similarity=0.278 Sum_probs=38.7
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEE--------EEcCcchHHHHHHH---Hh-CCCeEEEeccHHHHHHHHhC
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSML--------LVGGVEVKADVKKI---EE-EGANLLIGTPGRLYDIMERM 69 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~--------~~~g~~~~~~~~~l---~~-~~~~ilV~Tp~~l~~~~~~~ 69 (203)
+||.+++++.+..+.+.+.+... ++++++.. ++||.+..++...+ .+ +..+|||+|- .+.
T Consensus 634 vLIF~~t~~~ae~L~~~L~~~~~-l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~-----~~~-- 705 (936)
T 4a2w_A 634 TLLFAKTRALVSALKKCMEENPI-LNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----VAD-- 705 (936)
T ss_dssp EEEEESSHHHHHHHHHHHHHCST-TSSCCCEEC----------------------------CCSEEEEEC-----C----
T ss_pred EEEEeCCHHHHHHHHHHHhhCcc-ccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeC-----chh--
Confidence 79999999999999999987522 11344333 34555554444433 33 5679999995 222
Q ss_pred CCccCCCccEEEEcc
Q 028826 70 DVLDFRNLVILVLDE 84 (203)
Q Consensus 70 ~~~~l~~v~~lViDE 84 (203)
.++|+.+++++|.=+
T Consensus 706 eGIDlp~v~~VI~yD 720 (936)
T 4a2w_A 706 EGIDIVQCNLVVLYE 720 (936)
T ss_dssp ----CCCCSEEEEES
T ss_pred cCCcchhCCEEEEeC
Confidence 468888888888643
No 144
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=77.62 E-value=2.3 Score=35.65 Aligned_cols=75 Identities=19% Similarity=0.279 Sum_probs=34.6
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEE--------EcCcchHHHHHHH---Hh-CCCeEEEeccHHHHHHHHhC
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLL--------VGGVEVKADVKKI---EE-EGANLLIGTPGRLYDIMERM 69 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~--------~~g~~~~~~~~~l---~~-~~~~ilV~Tp~~l~~~~~~~ 69 (203)
+||.+++++-+..+.+.+++.... +++++..+ +||.+..++...+ .+ +..+|||+|. .+.
T Consensus 393 ~lVF~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~-----~~~-- 464 (556)
T 4a2p_A 393 TLLFAKTRALVSALKKCMEENPIL-NYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----VAD-- 464 (556)
T ss_dssp EEEEESSHHHHHHHHHHHTTCSGG-GSCCEEC------------------------------CCEEEEEC----------
T ss_pred EEEEEccHHHHHHHHHHHHhCCCc-ceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcC-----chh--
Confidence 799999999999999888775221 13444444 3445444433332 23 5679999995 222
Q ss_pred CCccCCCccEEEEcc
Q 028826 70 DVLDFRNLVILVLDE 84 (203)
Q Consensus 70 ~~~~l~~v~~lViDE 84 (203)
.++|+.+++++|.=+
T Consensus 465 ~GiDip~v~~VI~~d 479 (556)
T 4a2p_A 465 EGIDIVQCNLVVLYE 479 (556)
T ss_dssp --------CEEEEET
T ss_pred cCCCchhCCEEEEeC
Confidence 579999999998733
No 145
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=76.82 E-value=0.79 Score=31.91 Aligned_cols=44 Identities=18% Similarity=0.143 Sum_probs=26.5
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCC-CCcEEEEeeecC
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPK-LRRTGLFSATQT 118 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~-~~q~i~~SAT~~ 118 (203)
+.+.+++++||++.+.... ...+..++..+.. ...++++++..+
T Consensus 81 ~~~~~lLilDE~~~~~~~~-~~~l~~li~~~~~~g~~~iiits~~~ 125 (149)
T 2kjq_A 81 AFEAEYLAVDQVEKLGNEE-QALLFSIFNRFRNSGKGFLLLGSEYT 125 (149)
T ss_dssp GGGCSEEEEESTTCCCSHH-HHHHHHHHHHHHHHTCCEEEEEESSC
T ss_pred HhCCCEEEEeCccccChHH-HHHHHHHHHHHHHcCCcEEEEECCCC
Confidence 3467899999999864433 5556666655432 234345555543
No 146
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=76.71 E-value=4.1 Score=29.87 Aligned_cols=53 Identities=13% Similarity=0.145 Sum_probs=41.5
Q ss_pred CCccEEEEcchhHhhhhc--hHHHHHHHHHhCCCCCcEEEEeeecChhHHHHHHh
Q 028826 75 RNLVILVLDEADRLLDMG--FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~--~~~~~~~il~~~~~~~q~i~~SAT~~~~v~~~~~~ 127 (203)
.+.++||+||+-..+..+ -.+++..++..-|...-+|+.+-..|+++.++++.
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~ 173 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADT 173 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSE
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCcc
Confidence 578999999998776665 35667777887777788888888888888777763
No 147
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=76.51 E-value=5.3 Score=34.95 Aligned_cols=75 Identities=8% Similarity=0.054 Sum_probs=51.7
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcC-C------------------------CceEEEEEcCcchHHHHHH---HHhCCC
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTL-P------------------------DVKSMLLVGGVEVKADVKK---IEEEGA 52 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~-~------------------------~i~~~~~~~g~~~~~~~~~---l~~~~~ 52 (203)
.+||++||++-+..+...+.+..... + +..+..++||.+..++... ..++..
T Consensus 244 ~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~ 323 (702)
T 2p6r_A 244 GVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNI 323 (702)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCC
Confidence 37999999999998888877643210 0 1246778999887655443 234678
Q ss_pred eEEEeccHHHHHHHHhCCCccCCCccEEEE
Q 028826 53 NLLIGTPGRLYDIMERMDVLDFRNLVILVL 82 (203)
Q Consensus 53 ~ilV~Tp~~l~~~~~~~~~~~l~~v~~lVi 82 (203)
+|||+|.-- . .++++..+.++|-
T Consensus 324 ~vlvaT~~l------~-~Gidip~~~~VI~ 346 (702)
T 2p6r_A 324 KVVVATPTL------A-AGVNLPARRVIVR 346 (702)
T ss_dssp CEEEECSTT------T-SSSCCCBSEEEEC
T ss_pred eEEEECcHH------h-ccCCCCceEEEEc
Confidence 999999732 2 5788888877553
No 148
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=76.37 E-value=9 Score=32.62 Aligned_cols=77 Identities=12% Similarity=0.110 Sum_probs=48.6
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcC---CCceEEEEEcCcch--HHHHHHHHhCCCe---EEEeccHHHHHHHHhCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTL---PDVKSMLLVGGVEV--KADVKKIEEEGAN---LLIGTPGRLYDIMERMDVLD 73 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~---~~i~~~~~~~g~~~--~~~~~~l~~~~~~---ilV~Tp~~l~~~~~~~~~~~ 73 (203)
+||++++++-|..+.+.+.+..... .+-.+..++|+... .+..+...++..+ |+|+|- . +. .++|
T Consensus 442 ~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt~-~----l~--~GiD 514 (590)
T 3h1t_A 442 TIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQ-L----LT--TGVD 514 (590)
T ss_dssp EEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEESS-T----TT--TTCC
T ss_pred EEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEECC-h----hh--cCcc
Confidence 7999999999999999998875421 12235556666543 1122223232233 667664 2 22 5799
Q ss_pred CCCccEEEEcch
Q 028826 74 FRNLVILVLDEA 85 (203)
Q Consensus 74 l~~v~~lViDEa 85 (203)
+.++.++|++..
T Consensus 515 ip~v~~Vi~~~~ 526 (590)
T 3h1t_A 515 APTCKNVVLARV 526 (590)
T ss_dssp CTTEEEEEEESC
T ss_pred chheeEEEEEec
Confidence 999999998654
No 149
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=74.79 E-value=10 Score=28.96 Aligned_cols=72 Identities=8% Similarity=0.092 Sum_probs=48.8
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHH---hC-CCe-EEEeccHHHHHHHHhCCCccCCC
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIE---EE-GAN-LLIGTPGRLYDIMERMDVLDFRN 76 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~---~~-~~~-ilV~Tp~~l~~~~~~~~~~~l~~ 76 (203)
+||.+.+++.+..+...+.+-. ++++..++|+.+..+....+. ++ .+. ++++|- .. . .++++..
T Consensus 115 vlIFs~~~~~~~~l~~~L~~~~----g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~-~~-----g-~Glnl~~ 183 (271)
T 1z5z_A 115 IAIFTQFVDMGKIIRNIIEKEL----NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK-AG-----G-FGINLTS 183 (271)
T ss_dssp EEEEESCHHHHHHHHHHHHHHH----CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECC-TT-----C-CCCCCTT
T ss_pred EEEEeccHHHHHHHHHHHHHhc----CCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehh-hh-----c-CCcCccc
Confidence 6899999998888888776631 567778899887655544432 23 455 455543 32 2 5789999
Q ss_pred ccEEEEcc
Q 028826 77 LVILVLDE 84 (203)
Q Consensus 77 v~~lViDE 84 (203)
+..+|+=+
T Consensus 184 a~~VI~~d 191 (271)
T 1z5z_A 184 ANRVIHFD 191 (271)
T ss_dssp CSEEEECS
T ss_pred CCEEEEEC
Confidence 99988733
No 150
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=74.06 E-value=18 Score=31.29 Aligned_cols=21 Identities=10% Similarity=0.115 Sum_probs=17.4
Q ss_pred EEEEcCcHHHHHHHHHHHHHh
Q 028826 2 GMIISPTRELSAQIYHVAQPF 22 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l 22 (203)
.|+++||...+.++.+.+.+.
T Consensus 227 ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 227 VLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp EEEEESSHHHHHHHHHHHHTT
T ss_pred EEEEeCcHHHHHHHHHHHHhc
Confidence 589999999999888877654
No 151
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=73.57 E-value=3.7 Score=36.57 Aligned_cols=75 Identities=19% Similarity=0.258 Sum_probs=36.8
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCce--------EEEEEcCcchHHHHHHH---Hh-CCCeEEEeccHHHHHHHHhC
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVK--------SMLLVGGVEVKADVKKI---EE-EGANLLIGTPGRLYDIMERM 69 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~--------~~~~~~g~~~~~~~~~l---~~-~~~~ilV~Tp~~l~~~~~~~ 69 (203)
+||.+++++.+..+.+.+++... .++++ ...++||.+..++...+ .+ +..+|||+|- .+.
T Consensus 634 vLIF~~~~~~~~~L~~~L~~~~~-~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~-----~~~-- 705 (797)
T 4a2q_A 634 TLLFAKTRALVSALKKCMEENPI-LNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----VAD-- 705 (797)
T ss_dssp EEEEESSHHHHHHHHHHHHTCST-TCSCCCEEC----------------------------CCSEEEEEC-----C----
T ss_pred EEEEECcHHHHHHHHHHHHhCcc-cccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcC-----chh--
Confidence 79999999999999999887421 11333 33344555544444333 23 5679999995 222
Q ss_pred CCccCCCccEEEEcc
Q 028826 70 DVLDFRNLVILVLDE 84 (203)
Q Consensus 70 ~~~~l~~v~~lViDE 84 (203)
.++|+.+++++|.=+
T Consensus 706 ~GIDlp~v~~VI~yd 720 (797)
T 4a2q_A 706 EGIDIVQCNLVVLYE 720 (797)
T ss_dssp -----CCCSEEEEES
T ss_pred cCCCchhCCEEEEeC
Confidence 578999999998743
No 152
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria gonorrhoeae}
Probab=73.42 E-value=9 Score=28.70 Aligned_cols=26 Identities=27% Similarity=0.558 Sum_probs=20.7
Q ss_pred ccHHHHHHHHhCCCccCCCccEEEEcc
Q 028826 58 TPGRLYDIMERMDVLDFRNLVILVLDE 84 (203)
Q Consensus 58 Tp~~l~~~~~~~~~~~l~~v~~lViDE 84 (203)
||..+++.+.. ..++.+++.++-+||
T Consensus 45 tp~~~y~~L~~-~~i~w~~v~~f~~DE 70 (232)
T 3lhi_A 45 SPIAFFNALSQ-KDLDWKNVGITLADE 70 (232)
T ss_dssp TTHHHHHHHHT-SCCCGGGEEEEESEE
T ss_pred CHHHHHHHHHh-cCCCchheEEEEeee
Confidence 45666666665 678999999999999
No 153
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=73.18 E-value=8.1 Score=27.50 Aligned_cols=40 Identities=28% Similarity=0.195 Sum_probs=26.9
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEee
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SA 115 (203)
.+-.++++||+|.+... ....+..++...+....+++.|.
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEeC
Confidence 56789999999988543 35556667776655555555543
No 154
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=72.73 E-value=4 Score=34.32 Aligned_cols=37 Identities=24% Similarity=0.161 Sum_probs=28.3
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEe
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~S 114 (203)
..++++|+|||++| |..+......+++.+ .-|.|+.+
T Consensus 413 ~~~rlvvlDEA~km-D~~~~~~~~~l~~~l--glQliiat 449 (483)
T 3euj_A 413 LPCRLLFLDQAARL-DAMSINTLFELCERL--DMQLLIAA 449 (483)
T ss_dssp CCCCEEEESSGGGS-CHHHHHHHHHHHHHT--TCEEEEEE
T ss_pred CceeEEEEeccccC-CHHHHHHHHHHHHHc--CCEEEEEC
Confidence 58999999999776 555666677777777 58888653
No 155
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=72.64 E-value=0.89 Score=35.09 Aligned_cols=31 Identities=13% Similarity=0.287 Sum_probs=25.2
Q ss_pred CCCCcHHHHHHHHhcC--CCCeEEEEeccCCcc
Q 028826 170 ESDKKPSQLVDLLIKN--KSKKIIMYVQHGNFS 200 (203)
Q Consensus 170 ~~~~k~~~l~~ll~~~--~~~~~lIF~ns~~~~ 200 (203)
....|...|.+++... .++++||||++...+
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~ 125 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMG 125 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHH
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHH
Confidence 4567999999999865 678999999986543
No 156
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=71.79 E-value=38 Score=27.40 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=21.4
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCC
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLP 27 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~ 27 (203)
+++++||++-|..+.+.++.+....|
T Consensus 211 v~~vA~t~~qA~~vf~~i~~mi~~~P 236 (385)
T 2o0j_A 211 VGILAHKGSMSAEVLDRTKQAIELLP 236 (385)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHhCh
Confidence 57899999999988888888876554
No 157
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=71.75 E-value=0.36 Score=43.19 Aligned_cols=79 Identities=18% Similarity=0.306 Sum_probs=49.5
Q ss_pred EEEEcCcHHHH-----HHHHHHHHHhhh-cCCCceEEEEEcCcchHHHH---HHHHhCCCeEEEeccHHHHHHHHhCCCc
Q 028826 2 GMIISPTRELS-----AQIYHVAQPFIS-TLPDVKSMLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVL 72 (203)
Q Consensus 2 alil~PtreLa-----~Qi~~~~~~l~~-~~~~i~~~~~~~g~~~~~~~---~~l~~~~~~ilV~Tp~~l~~~~~~~~~~ 72 (203)
++|++|+.+-. .........+.. .++++++..++|+.+..+.. ....++..+|+|+|. .+ . .++
T Consensus 581 vlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~-----vi-e-~GI 653 (780)
T 1gm5_A 581 AFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTT-----VI-E-VGI 653 (780)
T ss_dssp BCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSS-----CC-C-SCS
T ss_pred EEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECC-----CC-C-ccc
Confidence 56788865432 123344445544 44578899999987644333 334456789999996 22 2 689
Q ss_pred cCCCccEEEEcchhH
Q 028826 73 DFRNLVILVLDEADR 87 (203)
Q Consensus 73 ~l~~v~~lViDEad~ 87 (203)
|+.+++++|+..++.
T Consensus 654 DiP~v~~VIi~d~~r 668 (780)
T 1gm5_A 654 DVPRANVMVIENPER 668 (780)
T ss_dssp CCTTCCEEEBCSCSS
T ss_pred cCCCCCEEEEeCCCC
Confidence 999999999988775
No 158
>3nwp_A 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, hydrolase; HET: MSE P6G PG4; 1.40A {Shewanella baltica}
Probab=70.55 E-value=12 Score=28.03 Aligned_cols=27 Identities=26% Similarity=0.578 Sum_probs=21.4
Q ss_pred ccHHHHHHHHhCCCccCCCccEEEEcch
Q 028826 58 TPGRLYDIMERMDVLDFRNLVILVLDEA 85 (203)
Q Consensus 58 Tp~~l~~~~~~~~~~~l~~v~~lViDEa 85 (203)
||..+++.+.. ..++.+++.++-+||-
T Consensus 48 tp~~~y~~L~~-~~idw~~v~~f~~DEr 74 (233)
T 3nwp_A 48 TPLKLFQLLSM-KSIDWSDVYITLADER 74 (233)
T ss_dssp TTHHHHHHHHH-CCSCGGGEEEEESEEE
T ss_pred CHHHHHHHHHh-cCCChhHeEEEeCeec
Confidence 46666666666 7899999999999993
No 159
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=70.27 E-value=21 Score=31.93 Aligned_cols=54 Identities=11% Similarity=0.077 Sum_probs=31.0
Q ss_pred CCeEEEeccHHHHHHHHhCCCccCCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEee
Q 028826 51 GANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (203)
Q Consensus 51 ~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SA 115 (203)
..+||++|..... . ..+.-..++++|||||-+.... . .++..+....++++++-
T Consensus 495 ~a~VI~~T~~~~~----~-~~l~~~~fd~viIDEAsQ~~e~----~--~li~l~~~~~~~ilvGD 548 (800)
T 2wjy_A 495 NADVICCTCVGAG----D-PRLAKMQFRSILIDESTQATEP----E--CMVPVVLGAKQLILVGD 548 (800)
T ss_dssp HCSEEEEETGGGG----C-TTTTTCCCSEEEETTGGGSCHH----H--HHHHHTTTBSEEEEEEC
T ss_pred cCCEEEEchhhhC----C-hhhhcCCCCEEEEECCCCCCcH----H--HHHHHHhcCCeEEEecc
Confidence 4788998875542 1 2233346889999999665322 1 23333434455555543
No 160
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens}
Probab=68.45 E-value=11 Score=28.10 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=21.4
Q ss_pred ccHHHHHHHHhCCCccCCCccEEEEcch
Q 028826 58 TPGRLYDIMERMDVLDFRNLVILVLDEA 85 (203)
Q Consensus 58 Tp~~l~~~~~~~~~~~l~~v~~lViDEa 85 (203)
||..+++.+.. ..++.+++.++-+||-
T Consensus 44 tp~~~y~~L~~-~~idw~~v~~f~~DEr 70 (226)
T 3lwd_A 44 TPKPFFTSLAA-KALPWARVDVTLADER 70 (226)
T ss_dssp TTHHHHHHHHT-SCSCGGGEEEEESEEE
T ss_pred CHHHHHHHHHh-cCCCchhEEEEEeeec
Confidence 46666666666 6789999999999994
No 161
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=68.19 E-value=22 Score=25.72 Aligned_cols=59 Identities=10% Similarity=0.131 Sum_probs=38.8
Q ss_pred EEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcc-hHHHHHHHHhCCCeEEEeccHHHHHHHHh
Q 028826 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVE-VKADVKKIEEEGANLLIGTPGRLYDIMER 68 (203)
Q Consensus 3 lil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~-~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~ 68 (203)
++++|..+|...+.+.+.++ +..+....++.+ .-...+.+ +.++||+|+.-+. ..+++.
T Consensus 8 ~~iapy~~l~~~~~~i~~e~-----~~~i~i~~~~l~~~v~~a~~~-~~~~dVIISRGgt-a~~lr~ 67 (196)
T 2q5c_A 8 ALISQNENLLNLFPKLALEK-----NFIPITKTASLTRASKIAFGL-QDEVDAIISRGAT-SDYIKK 67 (196)
T ss_dssp EEEESCHHHHHHHHHHHHHH-----TCEEEEEECCHHHHHHHHHHH-TTTCSEEEEEHHH-HHHHHT
T ss_pred EEEEccHHHHHHHHHHHhhh-----CCceEEEECCHHHHHHHHHHh-cCCCeEEEECChH-HHHHHH
Confidence 68999999998777766655 345555666644 33344455 6789999885444 456654
No 162
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=67.38 E-value=11 Score=31.73 Aligned_cols=59 Identities=14% Similarity=0.184 Sum_probs=37.6
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcC-----------cch-HHHHH---HHHhCCCeEEEeccHHHHH
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGG-----------VEV-KADVK---KIEEEGANLLIGTPGRLYD 64 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g-----------~~~-~~~~~---~l~~~~~~ilV~Tp~~l~~ 64 (203)
.|||+|+..+|.|+++.++.+.+. + +..+.+- ... ..... .|......|||+|+..+++
T Consensus 42 ~lvv~~~~~~A~~l~~~l~~~~~~--~--v~~fp~~e~lpyd~~~p~~~~~~~Rl~~l~~L~~~~~~ivv~sv~al~~ 115 (483)
T 3hjh_A 42 VVLIAPDMQNALRLHDEISQFTDQ--M--VMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQ 115 (483)
T ss_dssp EEEEESSHHHHHHHHHHHHHTCSS--C--EEECCCCCSCTTCSSCCCHHHHHHHHHHHHHGGGCCSSEEEEEHHHHHB
T ss_pred EEEEeCCHHHHHHHHHHHHhhCCC--c--EEEEeCcccccccccCCChHHHHHHHHHHHHHHhCCCCEEEEEHHHHhh
Confidence 589999999999999999998532 2 3333321 010 11222 3334567799999887753
No 163
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=65.57 E-value=6.2 Score=28.50 Aligned_cols=39 Identities=13% Similarity=0.114 Sum_probs=22.8
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEe
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~S 114 (203)
..-.++|+||+|.+.. .....+...+...+....+++.|
T Consensus 125 ~~~~vlviDe~~~l~~-~~~~~l~~~l~~~~~~~~~i~~t 163 (250)
T 1njg_A 125 GRFKVYLIDEVHMLSR-HSFNALLKTLEEPPEHVKFLLAT 163 (250)
T ss_dssp SSSEEEEEETGGGSCH-HHHHHHHHHHHSCCTTEEEEEEE
T ss_pred CCceEEEEECcccccH-HHHHHHHHHHhcCCCceEEEEEe
Confidence 3457999999998743 23444555555544444444444
No 164
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=65.16 E-value=5.4 Score=31.10 Aligned_cols=89 Identities=12% Similarity=0.208 Sum_probs=44.8
Q ss_pred ceEEEEEcC--cchHHHHHHHH----hCCCeEEEeccHHHHHHHHh-C--CCc-----cCCCccEEEEcchhHhhhh-ch
Q 028826 29 VKSMLLVGG--VEVKADVKKIE----EEGANLLIGTPGRLYDIMER-M--DVL-----DFRNLVILVLDEADRLLDM-GF 93 (203)
Q Consensus 29 i~~~~~~~g--~~~~~~~~~l~----~~~~~ilV~Tp~~l~~~~~~-~--~~~-----~l~~v~~lViDEad~l~~~-~~ 93 (203)
.+...++|. .....-.+.+. ..+..++..+.+.+..-+.. . +.. ...+..++++||+|.+... ..
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~~~~~ 116 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERT 116 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTTCHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccCChHH
Confidence 355677774 33333333332 22567777776665432211 0 111 0234679999999998642 23
Q ss_pred HHHHHHHHHhC-CCCCcEEEEeeecC
Q 028826 94 QKQISYIISRL-PKLRRTGLFSATQT 118 (203)
Q Consensus 94 ~~~~~~il~~~-~~~~q~i~~SAT~~ 118 (203)
...+..++..+ ....++++ +++.+
T Consensus 117 ~~~l~~~l~~~~~~~~~iii-~~~~~ 141 (324)
T 1l8q_A 117 QIEFFHIFNTLYLLEKQIIL-ASDRH 141 (324)
T ss_dssp HHHHHHHHHHHHHTTCEEEE-EESSC
T ss_pred HHHHHHHHHHHHHCCCeEEE-EecCC
Confidence 44455555443 23445444 45544
No 165
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=64.90 E-value=17 Score=27.33 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=25.9
Q ss_pred CCccEEEEcchhHhhhh-----c-hHHHHHHHHHhCC----CCCcEEEEeeecChh
Q 028826 75 RNLVILVLDEADRLLDM-----G-FQKQISYIISRLP----KLRRTGLFSATQTEA 120 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~-----~-~~~~~~~il~~~~----~~~q~i~~SAT~~~~ 120 (203)
..-.++++||+|.++.. . ....+..+...+. ...+++++.+|-.+.
T Consensus 123 ~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~ 178 (272)
T 1d2n_A 123 SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKD 178 (272)
T ss_dssp SSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHH
T ss_pred cCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChh
Confidence 45689999999998531 1 1222333333332 344666666665543
No 166
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=64.76 E-value=10 Score=28.76 Aligned_cols=13 Identities=31% Similarity=0.503 Sum_probs=11.3
Q ss_pred ccEEEEcchhHhh
Q 028826 77 LVILVLDEADRLL 89 (203)
Q Consensus 77 v~~lViDEad~l~ 89 (203)
-.++++||+|.+.
T Consensus 111 ~~vl~iDEid~l~ 123 (285)
T 3h4m_A 111 PSIIFIDEIDAIA 123 (285)
T ss_dssp SEEEEEETTHHHH
T ss_pred CeEEEEECHHHhc
Confidence 3699999999985
No 167
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=64.74 E-value=53 Score=29.41 Aligned_cols=21 Identities=5% Similarity=0.118 Sum_probs=18.0
Q ss_pred EEEEcCcHHHHHHHHHHHHHh
Q 028826 2 GMIISPTRELSAQIYHVAQPF 22 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l 22 (203)
.|+++||...+.++.+.+.+.
T Consensus 407 ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 407 ILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp EEEEESSHHHHHHHHHHHHHT
T ss_pred EEEEcCcHHHHHHHHHHHHhh
Confidence 589999999999988887765
No 168
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=64.54 E-value=17 Score=25.84 Aligned_cols=39 Identities=10% Similarity=0.017 Sum_probs=25.6
Q ss_pred CccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecC
Q 028826 76 NLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (203)
Q Consensus 76 ~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~ 118 (203)
+..++++||++.+ +.+..+.+..+... ...+++++-+.+
T Consensus 76 ~~dvviIDE~Q~~-~~~~~~~l~~l~~~---~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 76 DTRGVFIDEVQFF-NPSLFEVVKDLLDR---GIDVFCAGLDLT 114 (184)
T ss_dssp TEEEEEECCGGGS-CTTHHHHHHHHHHT---TCEEEEEEESBC
T ss_pred CCCEEEEECcccC-CHHHHHHHHHHHHC---CCCEEEEeeccc
Confidence 5789999999875 34455555555543 566666666544
No 169
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=63.69 E-value=7.7 Score=29.77 Aligned_cols=12 Identities=42% Similarity=0.468 Sum_probs=10.8
Q ss_pred cEEEEcchhHhh
Q 028826 78 VILVLDEADRLL 89 (203)
Q Consensus 78 ~~lViDEad~l~ 89 (203)
.++++||+|.+.
T Consensus 132 ~vl~iDEid~l~ 143 (309)
T 3syl_A 132 GVLFIDEAYYLY 143 (309)
T ss_dssp SEEEEETGGGSC
T ss_pred CEEEEEChhhhc
Confidence 599999999986
No 170
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=63.64 E-value=17 Score=27.84 Aligned_cols=39 Identities=26% Similarity=0.229 Sum_probs=26.0
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEe
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~S 114 (203)
.+-.++++||+|.+... ....+..++...+....+++.+
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 56789999999988543 3455666666665555555543
No 171
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=62.75 E-value=7.8 Score=31.96 Aligned_cols=88 Identities=17% Similarity=0.328 Sum_probs=46.4
Q ss_pred ceEEEEEcCc--chHHHHHHHHh----C--CCeEEEeccHHHHH-HHHh--CCCc-----cCC-CccEEEEcchhHhhhh
Q 028826 29 VKSMLLVGGV--EVKADVKKIEE----E--GANLLIGTPGRLYD-IMER--MDVL-----DFR-NLVILVLDEADRLLDM 91 (203)
Q Consensus 29 i~~~~~~~g~--~~~~~~~~l~~----~--~~~ilV~Tp~~l~~-~~~~--~~~~-----~l~-~v~~lViDEad~l~~~ 91 (203)
.+...++|+. ....-.+.+.. . +..++..+.+.+.. +... .+.. .+. +..++++||+|.+.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK 209 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence 5667788743 34333333321 1 55677766665533 2211 0111 123 6789999999998753
Q ss_pred -chHHHHHHHHHhC-CCCCcEEEEeee
Q 028826 92 -GFQKQISYIISRL-PKLRRTGLFSAT 116 (203)
Q Consensus 92 -~~~~~~~~il~~~-~~~~q~i~~SAT 116 (203)
.....+..++..+ ....++++.|..
T Consensus 210 ~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 210 TGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred hHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 2344455555443 344566655443
No 172
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=62.47 E-value=54 Score=25.64 Aligned_cols=36 Identities=19% Similarity=0.133 Sum_probs=21.1
Q ss_pred EEEEcchhHhhhhchHHH-HHHHHHhCCCCCcEEEEee
Q 028826 79 ILVLDEADRLLDMGFQKQ-ISYIISRLPKLRRTGLFSA 115 (203)
Q Consensus 79 ~lViDEad~l~~~~~~~~-~~~il~~~~~~~q~i~~SA 115 (203)
++++||+|.+........ +..++... ....+|+.|.
T Consensus 136 vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~ 172 (384)
T 2qby_B 136 IIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISN 172 (384)
T ss_dssp EEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECS
T ss_pred EEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEEC
Confidence 999999999975432334 55555544 3333444433
No 173
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=61.86 E-value=3.6 Score=29.03 Aligned_cols=105 Identities=17% Similarity=0.123 Sum_probs=51.3
Q ss_pred HHHHHHHhhhcC--CCceEEEEEcC--cchHHHHHHH----H-hCCCeEEEeccHHHHHHHHh---CCCc-----cCCCc
Q 028826 15 IYHVAQPFISTL--PDVKSMLLVGG--VEVKADVKKI----E-EEGANLLIGTPGRLYDIMER---MDVL-----DFRNL 77 (203)
Q Consensus 15 i~~~~~~l~~~~--~~i~~~~~~~g--~~~~~~~~~l----~-~~~~~ilV~Tp~~l~~~~~~---~~~~-----~l~~v 77 (203)
+.+.++++...+ +.-+...++|. .....-.+.+ . ..+..++..+...+...+.. .+.. .+.+.
T Consensus 22 ~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (180)
T 3ec2_A 22 ALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTVLNS 101 (180)
T ss_dssp HHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHHHTC
T ss_pred HHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHhcCC
Confidence 344455544433 12356677763 3333333322 1 34555665555555443321 0111 14467
Q ss_pred cEEEEcchhHh-hhhchHHHHHHHHHhCCCCCcEEEEeeecCh
Q 028826 78 VILVLDEADRL-LDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (203)
Q Consensus 78 ~~lViDEad~l-~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~ 119 (203)
+++|+||++.. ++......+..++.........+++|+..++
T Consensus 102 ~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 102 PVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp SEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred CEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 89999999853 3333455666666555322334444444443
No 174
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=61.55 E-value=3 Score=36.23 Aligned_cols=40 Identities=25% Similarity=0.378 Sum_probs=25.9
Q ss_pred CCCeEEEeccHHHHHHHHhCC-----CccCCCccEEEEcchhHhhh
Q 028826 50 EGANLLIGTPGRLYDIMERMD-----VLDFRNLVILVLDEADRLLD 90 (203)
Q Consensus 50 ~~~~ilV~Tp~~l~~~~~~~~-----~~~l~~v~~lViDEad~l~~ 90 (203)
..+||||+.-.-|.+..-..+ .++ -.=..+||||||.|.+
T Consensus 174 ~~ADvVV~ny~ylld~~~r~~~~~~~~i~-p~~~ivI~DEAHNL~d 218 (620)
T 4a15_A 174 PDADIVIAPYAYFLNRSVAEKFLSHWGVS-RNQIVIILDEAHNLPD 218 (620)
T ss_dssp GGCSEEEEEHHHHTCHHHHHHHHHHHTCC-GGGEEEEETTGGGHHH
T ss_pred hcCCEEEeCchhhcCHHHHHHHHHhhccC-cCCeEEEEECCCchHH
Confidence 468999999876554322101 112 2346999999999865
No 175
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=60.61 E-value=2.3 Score=29.71 Aligned_cols=14 Identities=21% Similarity=0.532 Sum_probs=11.8
Q ss_pred CccEEEEcchhHhh
Q 028826 76 NLVILVLDEADRLL 89 (203)
Q Consensus 76 ~v~~lViDEad~l~ 89 (203)
.-.++++||+|.+.
T Consensus 115 ~~~vl~iDe~~~l~ 128 (187)
T 2p65_A 115 GQVVMFIDEIHTVV 128 (187)
T ss_dssp TSEEEEETTGGGGS
T ss_pred CceEEEEeCHHHhc
Confidence 34699999999996
No 176
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=60.31 E-value=19 Score=28.22 Aligned_cols=39 Identities=26% Similarity=0.456 Sum_probs=27.5
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEe
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~S 114 (203)
..-+++|+||+|.|... ....+..+++..+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 45789999999988543 4556677777776666666553
No 177
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=59.84 E-value=28 Score=32.02 Aligned_cols=75 Identities=8% Similarity=0.022 Sum_probs=49.8
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhh-----------------------------------cCCCceEEEEEcCcchHHHHHH
Q 028826 2 GMIISPTRELSAQIYHVAQPFIS-----------------------------------TLPDVKSMLLVGGVEVKADVKK 46 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~-----------------------------------~~~~i~~~~~~~g~~~~~~~~~ 46 (203)
+||.++|+.-|.++...+.++.- .. ...+..++||.....+...
T Consensus 339 ~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l-~~gi~~~H~gl~~~~R~~v 417 (997)
T 4a4z_A 339 MVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLL-ERGIAVHHGGLLPIVKELI 417 (997)
T ss_dssp EEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHH-TTTEEEECTTSCHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHh-hcCeeeecCCCCHHHHHHH
Confidence 68999999988877766644210 01 2257888999876555443
Q ss_pred ---HHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEEEcch
Q 028826 47 ---IEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEA 85 (203)
Q Consensus 47 ---l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lViDEa 85 (203)
..++..+|||+|- .+. .++|+.. ..+|+...
T Consensus 418 ~~~F~~G~~kVLvAT~-----~~a--~GIDiP~-~~VVi~~~ 451 (997)
T 4a4z_A 418 EILFSKGFIKVLFATE-----TFA--MGLNLPT-RTVIFSSI 451 (997)
T ss_dssp HHHHHTTCCSEEEECT-----HHH--HSCCCCC-SEEEESCS
T ss_pred HHHHHCCCCcEEEEch-----Hhh--CCCCCCC-ceEEEecc
Confidence 2346789999998 333 3688888 66666443
No 178
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=59.56 E-value=11 Score=29.28 Aligned_cols=39 Identities=23% Similarity=0.286 Sum_probs=25.7
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEe
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~S 114 (203)
.+-+++++||+|.+... ....+..++...+....+++.+
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEe
Confidence 34579999999988543 3455666676666555555544
No 179
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=59.51 E-value=10 Score=25.61 Aligned_cols=36 Identities=19% Similarity=0.053 Sum_probs=21.9
Q ss_pred cEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEe
Q 028826 78 VILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (203)
Q Consensus 78 ~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~S 114 (203)
..+++||+|.+-.. ....+..++...+.+..+|+.|
T Consensus 78 g~l~ldei~~l~~~-~q~~Ll~~l~~~~~~~~~I~~t 113 (145)
T 3n70_A 78 GTLVLSHPEHLTRE-QQYHLVQLQSQEHRPFRLIGIG 113 (145)
T ss_dssp SCEEEECGGGSCHH-HHHHHHHHHHSSSCSSCEEEEE
T ss_pred cEEEEcChHHCCHH-HHHHHHHHHhhcCCCEEEEEEC
Confidence 57999999988433 3445555555555455544443
No 180
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=59.39 E-value=37 Score=22.71 Aligned_cols=101 Identities=12% Similarity=0.099 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhhhcCCCceEEEEEc--CcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEEEcchhHh
Q 028826 11 LSAQIYHVAQPFISTLPDVKSMLLVG--GVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRL 88 (203)
Q Consensus 11 La~Qi~~~~~~l~~~~~~i~~~~~~~--g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lViDEad~l 88 (203)
...++.+.+..+... +.. +.++| |..+..-.+.+......++......+..-... +.+...+=..+++||+|.+
T Consensus 12 ~~~~l~~~~~~~~~~--~~~-vll~G~~GtGKt~lA~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~l~lDei~~l 87 (143)
T 3co5_A 12 AIQEMNREVEAAAKR--TSP-VFLTGEAGSPFETVARYFHKNGTPWVSPARVEYLIDMPM-ELLQKAEGGVLYVGDIAQY 87 (143)
T ss_dssp HHHHHHHHHHHHHTC--SSC-EEEEEETTCCHHHHHGGGCCTTSCEECCSSTTHHHHCHH-HHHHHTTTSEEEEEECTTC
T ss_pred HHHHHHHHHHHHhCC--CCc-EEEECCCCccHHHHHHHHHHhCCCeEEechhhCChHhhh-hHHHhCCCCeEEEeChHHC
Confidence 345566666666543 233 34454 33333333333221113554444333221111 1122222368999999988
Q ss_pred hhhchHHHHHHHHHhC-CCCCcEEEEeee
Q 028826 89 LDMGFQKQISYIISRL-PKLRRTGLFSAT 116 (203)
Q Consensus 89 ~~~~~~~~~~~il~~~-~~~~q~i~~SAT 116 (203)
-.. ....+.+++..- +.+..+|+.|..
T Consensus 88 ~~~-~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 88 SRN-IQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp CHH-HHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred CHH-HHHHHHHHHHhCCCCCEEEEEecCC
Confidence 433 233344444433 334455555443
No 181
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=57.97 E-value=6.5 Score=28.71 Aligned_cols=39 Identities=15% Similarity=0.009 Sum_probs=22.3
Q ss_pred ccEEEEcchhHhhhhc--hHHHHHHHHHhC----CCCCcEEEEeee
Q 028826 77 LVILVLDEADRLLDMG--FQKQISYIISRL----PKLRRTGLFSAT 116 (203)
Q Consensus 77 v~~lViDEad~l~~~~--~~~~~~~il~~~----~~~~q~i~~SAT 116 (203)
-.++||||||.++... ..+.. +++..+ ....++++++-.
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~-rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIP-ENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCC-HHHHGGGGTTTTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchhH-HHHHHHHhcCcCCeEEEEECCC
Confidence 5699999999986321 11111 233333 234477777665
No 182
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=57.91 E-value=17 Score=32.59 Aligned_cols=53 Identities=11% Similarity=0.026 Sum_probs=36.1
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHH-hCCCeEEEecc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIE-EEGANLLIGTP 59 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~-~~~~~ilV~Tp 59 (203)
+||.+.|++-+..+...+.+. +++...++|+....+...... -....|+|+|.
T Consensus 477 VLVFt~S~e~sE~Ls~~L~~~-----Gi~~~vLhgkq~~rE~~ii~~ag~~g~VtVATd 530 (822)
T 3jux_A 477 VLVGTTSIEKSELLSSMLKKK-----GIPHQVLNAKYHEKEAEIVAKAGQKGMVTIATN 530 (822)
T ss_dssp EEEEESSHHHHHHHHHHHHTT-----TCCCEEECSCHHHHHHHHHHHHHSTTCEEEEET
T ss_pred EEEEECCHHHHHHHHHHHHHC-----CCCEEEeeCCchHHHHHHHHhCCCCCeEEEEcc
Confidence 799999999998888877764 788888888843322211111 13457888884
No 183
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=57.55 E-value=26 Score=28.89 Aligned_cols=73 Identities=8% Similarity=0.088 Sum_probs=49.5
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHH---hC-CCe-EEEeccHHHHHHHHhCCCccCCC
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIE---EE-GAN-LLIGTPGRLYDIMERMDVLDFRN 76 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~---~~-~~~-ilV~Tp~~l~~~~~~~~~~~l~~ 76 (203)
+||.+.+++.+..+.+.+.+.. ++++..++|+.+..+....+. ++ ... ++++|- .. . .++++..
T Consensus 344 ~lvF~~~~~~~~~l~~~l~~~~----~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~-~~-----~-~Glnl~~ 412 (500)
T 1z63_A 344 IAIFTQFVDMGKIIRNIIEKEL----NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK-AG-----G-FGINLTS 412 (500)
T ss_dssp EEEECSCHHHHHHHHHHHHHHH----TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECC-CC-------CCCCCTT
T ss_pred EEEEEehHHHHHHHHHHHHHhh----CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecc-cc-----c-CCCchhh
Confidence 6899999999888888777632 566778899887665554432 22 244 555553 22 1 5789999
Q ss_pred ccEEEEcch
Q 028826 77 LVILVLDEA 85 (203)
Q Consensus 77 v~~lViDEa 85 (203)
++.+|+=+.
T Consensus 413 ~~~vi~~d~ 421 (500)
T 1z63_A 413 ANRVIHFDR 421 (500)
T ss_dssp CSEEEESSC
T ss_pred CCEEEEeCC
Confidence 999988443
No 184
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=56.70 E-value=17 Score=28.58 Aligned_cols=28 Identities=32% Similarity=0.205 Sum_probs=19.7
Q ss_pred ccEEEEcchhHhhhhc-hHHHHHHHHHhC
Q 028826 77 LVILVLDEADRLLDMG-FQKQISYIISRL 104 (203)
Q Consensus 77 v~~lViDEad~l~~~~-~~~~~~~il~~~ 104 (203)
-.++++||+|.+.... ....+..++...
T Consensus 131 ~~vlilDEi~~l~~~~~~~~~l~~l~~~~ 159 (387)
T 2v1u_A 131 IYIIVLDEIDFLPKRPGGQDLLYRITRIN 159 (387)
T ss_dssp EEEEEEETTTHHHHSTTHHHHHHHHHHGG
T ss_pred eEEEEEccHhhhcccCCCChHHHhHhhch
Confidence 5599999999997542 345566666655
No 185
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=56.32 E-value=2.8 Score=18.20 Aligned_cols=9 Identities=22% Similarity=0.464 Sum_probs=6.9
Q ss_pred EEEEeccCC
Q 028826 190 IIMYVQHGN 198 (203)
Q Consensus 190 ~lIF~ns~~ 198 (203)
-|||||.+.
T Consensus 7 piiycnrrt 15 (21)
T 8tfv_A 7 PIIYCNRRT 15 (26)
T ss_dssp CCEEEEGGG
T ss_pred cEEEEcCcc
Confidence 478999864
No 186
>1y89_A DEVB protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; HET: 2PE; 2.00A {Vibrio cholerae o1 biovar eltor str}
Probab=56.03 E-value=25 Score=26.26 Aligned_cols=176 Identities=13% Similarity=0.055 Sum_probs=85.4
Q ss_pred EEEcCcHH-HHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 3 MIISPTRE-LSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 3 lil~Ptre-La~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
+++.++.+ ++....+.+.+....- +--+..+.||.+...-.+.|.. .. .. +.++.+++.++-
T Consensus 4 ~~~~~~~~~l~~~aA~~i~~~i~~~-~~~~l~lsgGstp~~~~~~L~~-~~--------------~~-~~~~w~~v~~f~ 66 (238)
T 1y89_A 4 HKIFPTADAVVKSLADDMLAYSQQG-QPVHISLSGGSTPKMLFKLLAS-QP--------------YA-NDIQWKNLHFWW 66 (238)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHTTS-SCEEEEECCSHHHHHHHHHHTS-TT--------------HH-HHSCGGGEEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHHHHHhC-CCEEEEECCCccHHHHHHHHHh-hh--------------hc-cCCChhHeEEEe
Confidence 56677755 6666666665554331 3344556666544434333311 00 01 247888999999
Q ss_pred EcchhHhh-h--hchHHHH-HHHHHhCCC-CCcEEEEeeecCh--h---HHHHHHhcCC------CCeEEEeccCccccc
Q 028826 82 LDEADRLL-D--MGFQKQI-SYIISRLPK-LRRTGLFSATQTE--A---VEELSKAGLR------NPVRIEVRAESKSHH 145 (203)
Q Consensus 82 iDEad~l~-~--~~~~~~~-~~il~~~~~-~~q~i~~SAT~~~--~---v~~~~~~~l~------~~~~i~~~~~~~~~~ 145 (203)
+||-= +- + ..+...+ +.+++.++- ..|+.......++ . .++.++.++. ....+..+.+.++|.
T Consensus 67 ~DEr~-vp~~~~~Sn~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~y~~~l~~~~~~~~~~~~~Dl~lLGiG~dGH~ 145 (238)
T 1y89_A 67 GDERC-VAPDDAESNYGEANALLFSKINMPAQNIHRILGENEPQAEAERFAQAMAHVIPTENGTPVFDWILLGVGADGHT 145 (238)
T ss_dssp SEEES-SCTTSTTCHHHHHHHHTGGGSCCCGGGBCCCCTTSCHHHHHHHHHHHHHHHSCEETTEECCSEEEECCCTTSCB
T ss_pred ceecC-CCCCCHHHHHHHHHHHhhccCCCCHHHEEeCCCCCCHHHHHHHHHHHHHHhhcccCCCCCCCEEEECCCCCCce
Confidence 99842 21 1 1233333 344555532 2233222211121 1 2223444422 234555555555555
Q ss_pred ccchh-------hhhc-c---CCCCC-----------ceeEEEEEcCCCCcHHHHHHHHhcC------------C-CCeE
Q 028826 146 ASASS-------QQLA-S---SKTPL-----------GLHLEYLECESDKKPSQLVDLLIKN------------K-SKKI 190 (203)
Q Consensus 146 ~~~~~-------~~~~-~---~~~~~-----------~i~~~~~~~~~~~k~~~l~~ll~~~------------~-~~~~ 190 (203)
++--. ..+. . ...+. +.++.+..+.+++|.+.+...++.. . .+.+
T Consensus 146 aslfP~~l~~~~~~v~~~~~~~~~p~~rITltl~~i~~a~~vi~~a~G~~Ka~ai~~~l~~~~~~~~~Pas~l~~~~~~~ 225 (238)
T 1y89_A 146 ASLFPGQTDYADANLSVVASHPESGQLRVSKTAKVLQAAKRISYLVLGAGKAEIVEQIHTTPAEQLPYPAAKIHSTSGVT 225 (238)
T ss_dssp TTBCTTTCCTTCCSSEEEEECTTTCCEEEEECHHHHHHSSEEEEEECSGGGHHHHHHHHHSCGGGCCCHHHHCCCSSSEE
T ss_pred eecCCCCCCCCCcEEEeccCCCCCCCCeEECCHHHHHhCCEEEEEEeCHHHHHHHHHHHhCCCCCccCCHHHHhcCCCCE
Confidence 44111 1000 0 11111 1245566677889999999999752 1 4567
Q ss_pred EEEecc
Q 028826 191 IMYVQH 196 (203)
Q Consensus 191 lIF~ns 196 (203)
.+|+..
T Consensus 226 ~~~~D~ 231 (238)
T 1y89_A 226 EWYLDS 231 (238)
T ss_dssp EEEEEH
T ss_pred EEEECh
Confidence 777754
No 187
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=55.88 E-value=14 Score=31.71 Aligned_cols=38 Identities=18% Similarity=0.280 Sum_probs=28.3
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeee
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 116 (203)
.+.+++||||+..+ + ...+..+++.++...++++++-.
T Consensus 278 ~~~dvlIIDEasml-~---~~~~~~Ll~~~~~~~~lilvGD~ 315 (574)
T 3e1s_A 278 APYDLLIVDEVSMM-G---DALMLSLLAAVPPGARVLLVGDT 315 (574)
T ss_dssp CSCSEEEECCGGGC-C---HHHHHHHHTTSCTTCEEEEEECT
T ss_pred ccCCEEEEcCccCC-C---HHHHHHHHHhCcCCCEEEEEecc
Confidence 36789999999865 2 34667778888877888887544
No 188
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=55.73 E-value=14 Score=29.60 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=32.6
Q ss_pred CC-ccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEee
Q 028826 75 RN-LVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (203)
Q Consensus 75 ~~-v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SA 115 (203)
.+ ..++++||...=+|......+..++..+....|+++.|.
T Consensus 303 ~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th 344 (371)
T 3auy_A 303 GNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITH 344 (371)
T ss_dssp SSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEES
T ss_pred cCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEC
Confidence 45 789999999988888888888888888866667665553
No 189
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=55.65 E-value=18 Score=32.59 Aligned_cols=53 Identities=13% Similarity=0.038 Sum_probs=36.9
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHh-CCCeEEEecc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEE-EGANLLIGTP 59 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~-~~~~ilV~Tp 59 (203)
+||.+.|++-+..+...+.+. |++...++|+....+....... ....|+|+|-
T Consensus 435 vLVft~s~~~se~Ls~~L~~~-----gi~~~vLhg~~~~rEr~ii~~ag~~g~VlIATd 488 (844)
T 1tf5_A 435 VLVGTVAVETSELISKLLKNK-----GIPHQVLNAKNHEREAQIIEEAGQKGAVTIATN 488 (844)
T ss_dssp EEEEESCHHHHHHHHHHHHTT-----TCCCEEECSSCHHHHHHHHTTTTSTTCEEEEET
T ss_pred EEEEECCHHHHHHHHHHHHHC-----CCCEEEeeCCccHHHHHHHHHcCCCCeEEEeCC
Confidence 799999999998888877664 7888889988653333211111 2357999984
No 190
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=54.73 E-value=11 Score=29.60 Aligned_cols=39 Identities=13% Similarity=0.115 Sum_probs=23.8
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEe
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~S 114 (203)
..-+++|+||+|.+-.. ....+...+...+....+++.+
T Consensus 118 ~~~~vliiDe~~~l~~~-~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSEEEEEECGGGSCHH-HHHHHHHHHHSCCSSEEEEEEE
T ss_pred CCeEEEEEECcchhcHH-HHHHHHHHHhcCCCceEEEEEe
Confidence 45679999999988543 3444555555554444444443
No 191
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=54.13 E-value=13 Score=29.28 Aligned_cols=61 Identities=11% Similarity=0.145 Sum_probs=32.1
Q ss_pred CeEEEeccH---------HHHHHHHhCC-CccCCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEE
Q 028826 52 ANLLIGTPG---------RLYDIMERMD-VLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLF 113 (203)
Q Consensus 52 ~~ilV~Tp~---------~l~~~~~~~~-~~~l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~ 113 (203)
+|+..-.|+ .+.+++.... ......-+.+||||||.|-... ...+...++.-+...-+++.
T Consensus 74 ~d~~~~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a-~naLLk~lEep~~~~~~Il~ 144 (334)
T 1a5t_A 74 PDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAA-ANALLKTLEEPPAETWFFLA 144 (334)
T ss_dssp TTEEEECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHH-HHHHHHHHTSCCTTEEEEEE
T ss_pred CCEEEEeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHH-HHHHHHHhcCCCCCeEEEEE
Confidence 677776653 2334443311 1123567899999999985433 23333444443333334443
No 192
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=54.04 E-value=60 Score=23.56 Aligned_cols=37 Identities=5% Similarity=0.014 Sum_probs=22.9
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeee
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 116 (203)
.+++.++||||.-+ ....+.+..+. . ...|+++++=.
T Consensus 90 ~~~DvIlIDEaQFf--k~~ve~~~~L~-~--~gk~VI~~GL~ 126 (195)
T 1w4r_A 90 LGVAVIGIDEGQFF--PDIVEFCEAMA-N--AGKTVIVAALD 126 (195)
T ss_dssp HTCSEEEESSGGGC--TTHHHHHHHHH-H--TTCEEEEEEES
T ss_pred cCCCEEEEEchhhh--HHHHHHHHHHH-H--CCCeEEEEecc
Confidence 45789999999876 33444444443 2 35677765443
No 193
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=53.67 E-value=46 Score=24.61 Aligned_cols=57 Identities=5% Similarity=-0.038 Sum_probs=34.3
Q ss_pred eEEEeccHHHHHHHHhCCCccCCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEee
Q 028826 53 NLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (203)
Q Consensus 53 ~ilV~Tp~~l~~~~~~~~~~~l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SA 115 (203)
.+-+.++..+++.+.. .+.-.+.++++|||+..+ +....+.+..+.. ...++++++-
T Consensus 68 ~~~~~~~~~i~~~i~~--~~~~~~~dvViIDEaQ~l-~~~~ve~l~~L~~---~gi~Vil~Gl 124 (223)
T 2b8t_A 68 SVEVESAPEILNYIMS--NSFNDETKVIGIDEVQFF-DDRICEVANILAE---NGFVVIISGL 124 (223)
T ss_dssp CEEESSTHHHHHHHHS--TTSCTTCCEEEECSGGGS-CTHHHHHHHHHHH---TTCEEEEECC
T ss_pred ccccCCHHHHHHHHHH--HhhCCCCCEEEEecCccC-cHHHHHHHHHHHh---CCCeEEEEec
Confidence 3456667777777664 222345789999999864 3334444444443 2566666655
No 194
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=53.56 E-value=16 Score=34.08 Aligned_cols=73 Identities=8% Similarity=-0.039 Sum_probs=47.0
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCC----------------------------------CceEEEEEcCcchHHHHHH-
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLP----------------------------------DVKSMLLVGGVEVKADVKK- 46 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~----------------------------------~i~~~~~~~g~~~~~~~~~- 46 (203)
+||++++++-|.++...+..+.-..+ ...+..++||.....+...
T Consensus 444 vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~ 523 (1108)
T 3l9o_A 444 VIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIE 523 (1108)
T ss_dssp EEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHH
T ss_pred EEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHH
Confidence 79999999999888887765422210 0127888999876655443
Q ss_pred --HHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEE
Q 028826 47 --IEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (203)
Q Consensus 47 --l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lV 81 (203)
..++..+|||+|.- + . .++|+..+.++|
T Consensus 524 ~~F~~G~ikVLVAT~v-----l-a-~GIDiP~v~~VI 553 (1108)
T 3l9o_A 524 ILFQEGFLKVLFATET-----F-S-IGLNMPAKTVVF 553 (1108)
T ss_dssp HHHHHTCCCEEEEESC-----C-C-SCCCC--CEEEE
T ss_pred HHHhCCCCeEEEECcH-----H-h-cCCCCCCceEEE
Confidence 23577899999962 1 1 456777777644
No 195
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=53.36 E-value=10 Score=30.60 Aligned_cols=39 Identities=21% Similarity=0.196 Sum_probs=32.6
Q ss_pred cEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeee
Q 028826 78 VILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (203)
Q Consensus 78 ~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 116 (203)
.++++||.+.=+|......+..++..+.+..|+++.|-.
T Consensus 317 ~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~ 355 (415)
T 4aby_A 317 PSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHL 355 (415)
T ss_dssp SEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCc
Confidence 899999999888888888888888888767788877654
No 196
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=52.65 E-value=3 Score=34.38 Aligned_cols=66 Identities=12% Similarity=0.074 Sum_probs=44.0
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHH---HHHhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~---~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+||++++++.+..+.+.+. +..++|+.+..++.. ...++..+|||+|- .+. .++|+.++.
T Consensus 352 ~lvF~~~~~~~~~l~~~l~----------~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~-~~~------~Gldlp~~~ 414 (472)
T 2fwr_A 352 IIIFTRHNELVYRISKVFL----------IPAITHRTSREEREEILEGFRTGRFRAIVSSQ-VLD------EGIDVPDAN 414 (472)
T ss_dssp BCCBCSCHHHHHHHHHHTT----------CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSS-CCC------SSSCSCCBS
T ss_pred EEEEECCHHHHHHHHHHhC----------cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcC-chh------cCcccccCc
Confidence 5788888887776655431 234567766554433 33457899999993 221 689999999
Q ss_pred EEEEcc
Q 028826 79 ILVLDE 84 (203)
Q Consensus 79 ~lViDE 84 (203)
++|+-+
T Consensus 415 ~Vi~~~ 420 (472)
T 2fwr_A 415 VGVIMS 420 (472)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 998744
No 197
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=52.26 E-value=9.8 Score=29.17 Aligned_cols=38 Identities=21% Similarity=0.264 Sum_probs=25.2
Q ss_pred CccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEe
Q 028826 76 NLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (203)
Q Consensus 76 ~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~S 114 (203)
+-+++|+||+|.+.... ...+..++...+....+++.|
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 47899999999985432 344555666665555666554
No 198
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=52.22 E-value=21 Score=28.10 Aligned_cols=41 Identities=10% Similarity=0.189 Sum_probs=24.2
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHh--CC-CCCcEEEEeeecC
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISR--LP-KLRRTGLFSATQT 118 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~--~~-~~~q~i~~SAT~~ 118 (203)
+..-++++||+|.+.+ ...+..+++. .. ...-+|+.++|+.
T Consensus 131 ~~~~ii~lDE~d~l~~---q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 131 KRKTLILIQNPENLLS---EKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp SCEEEEEEECCSSSCC---THHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred CCceEEEEecHHHhhc---chHHHHHHhcccccCCcEEEEEEecCcc
Confidence 3456999999999973 2334444432 22 2334566677764
No 199
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=52.21 E-value=49 Score=25.58 Aligned_cols=60 Identities=13% Similarity=0.187 Sum_probs=30.3
Q ss_pred ceEEEEEcCc--chHHHHH----HHH-hCCCeEEEeccHHHHHHHHhC---CC----c-cCCCccEEEEcchhHh
Q 028826 29 VKSMLLVGGV--EVKADVK----KIE-EEGANLLIGTPGRLYDIMERM---DV----L-DFRNLVILVLDEADRL 88 (203)
Q Consensus 29 i~~~~~~~g~--~~~~~~~----~l~-~~~~~ilV~Tp~~l~~~~~~~---~~----~-~l~~v~~lViDEad~l 88 (203)
-+...++|.. ....-.. .+. ..+..+++.+...+..-+... +. + .+.+..+||+||++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVKNVPVLILDDIGAE 226 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHHTSSEEEEETCCC-
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 3566777743 2332222 222 445667655554554433320 11 1 1346789999999643
No 200
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET: BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A*
Probab=51.76 E-value=62 Score=23.74 Aligned_cols=36 Identities=14% Similarity=0.226 Sum_probs=25.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC-----------CCCeEEEEeccCC
Q 028826 163 HLEYLECESDKKPSQLVDLLIKN-----------KSKKIIMYVQHGN 198 (203)
Q Consensus 163 ~~~~~~~~~~~k~~~l~~ll~~~-----------~~~~~lIF~ns~~ 198 (203)
.+.+..+.+.+|.+.+...++.. ..+.+.+|+....
T Consensus 184 ~~vi~va~G~~Ka~ai~~al~g~~~~~~Pas~l~~~~~~~~~~D~~A 230 (234)
T 2ri0_A 184 KMILLMAFGEEKAEAVAAMVKGPVTEEIPASILQTHPKVILIVDEKA 230 (234)
T ss_dssp SEEEEEECSGGGHHHHHHHHHSCCCTTSGGGGGGGCSSEEEEEETTT
T ss_pred CEEEEEEeChHHHHHHHHHHcCCCCCccchHHHhhCCCEEEEEchHH
Confidence 56666677899999999999843 2246777776443
No 201
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=50.68 E-value=44 Score=24.82 Aligned_cols=36 Identities=14% Similarity=0.081 Sum_probs=23.3
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEe
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~S 114 (203)
.+..++.||||.- ++.+..+.+..+. .. ...+++++
T Consensus 100 ~~~dvV~IDEaQF-f~~~~v~~l~~la-~~--gi~Vi~~G 135 (219)
T 3e2i_A 100 TNVDVIGIDEVQF-FDDEIVSIVEKLS-AD--GHRVIVAG 135 (219)
T ss_dssp TTCSEEEECCGGG-SCTHHHHHHHHHH-HT--TCEEEEEE
T ss_pred cCCCEEEEechhc-CCHHHHHHHHHHH-HC--CCEEEEee
Confidence 4678999999964 4555666676666 33 34444443
No 202
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=50.14 E-value=1.2e+02 Score=25.84 Aligned_cols=95 Identities=11% Similarity=0.212 Sum_probs=50.9
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCC-ceEEEE-EcCcchHHHHHHHHhCCCeEEEec--cHHHHHHHHhCCCccCCCc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPD-VKSMLL-VGGVEVKADVKKIEEEGANLLIGT--PGRLYDIMERMDVLDFRNL 77 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~-i~~~~~-~~g~~~~~~~~~l~~~~~~ilV~T--p~~l~~~~~~~~~~~l~~v 77 (203)
+++++||++.|..+.+.++.+....|. ++.... .+.... . ..++..|.+.+ |+.+ +. .+.
T Consensus 211 i~~va~t~~qA~~~~~~i~~~i~~~p~~~~~~~~~~~~~~i----~--~~nGs~i~~~s~~~~~l----rG------~~~ 274 (592)
T 3cpe_A 211 VGILAHKGSMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSI----E--LDNGSSIGAYASSPDAV----RG------NSF 274 (592)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHTTSCTTTSCCEEEECSSEE----E--ETTSCEEEEEECCHHHH----HH------SCC
T ss_pred EEEEECCHHHHHHHHHHHHHHHHhChHhhccccccCCccEE----E--ecCCCEEEEEeCCCCCc----cC------CCc
Confidence 589999999999999888888766542 221111 011110 0 12344454443 3332 22 236
Q ss_pred cEEEEcchhHhhhhchHHHHHHHHHhCC--CCCcEEEEe
Q 028826 78 VILVLDEADRLLDMGFQKQISYIISRLP--KLRRTGLFS 114 (203)
Q Consensus 78 ~~lViDEad~l~~~~~~~~~~~il~~~~--~~~q~i~~S 114 (203)
.++++||++..-+. .+.+..+...+. .+.++++.|
T Consensus 275 ~~~iiDE~~~~~~~--~~l~~~~~~~l~~~~~~~ii~is 311 (592)
T 3cpe_A 275 AMIYIEDCAFIPNF--HDSWLAIQPVISSGRRSKIIITT 311 (592)
T ss_dssp SEEEEETGGGCTTH--HHHHHHHHHHHSSSSCCEEEEEE
T ss_pred ceEEEehhccCCch--hHHHHHHHHHhccCCCceEEEEe
Confidence 79999999976332 233344444443 245555554
No 203
>3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode, UW, SBRI, infectious disease, LYME DI non-hodgkin lymphomas, neuroborreliosis; 2.20A {Borrelia burgdorferi}
Probab=50.06 E-value=81 Score=24.31 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=25.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC-----------CCCeEEEEeccCC
Q 028826 163 HLEYLECESDKKPSQLVDLLIKN-----------KSKKIIMYVQHGN 198 (203)
Q Consensus 163 ~~~~~~~~~~~k~~~l~~ll~~~-----------~~~~~lIF~ns~~ 198 (203)
++.++.+.+++|.+.+.+.++.. ..+.+.+|+....
T Consensus 218 r~i~lla~G~~Ka~av~~~l~g~~~~~~Pas~l~~h~~~~~~lD~~A 264 (289)
T 3hn6_A 218 QEVLIIVNGHNKARALKHAIEKGVNHMWTISALQLHKNAIIVSDKNA 264 (289)
T ss_dssp SCEEEEECSGGGHHHHHHHHTSCCCTTSGGGGGGGCSSEEEEEESGG
T ss_pred CeEEEEEcChHHHHHHHHHHhCCCCcccChHHHccCCCEEEEEcHHH
Confidence 45566677889999999999743 2346888886544
No 204
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=50.03 E-value=43 Score=26.66 Aligned_cols=112 Identities=13% Similarity=0.137 Sum_probs=57.0
Q ss_pred HHHHHHHhhhcCCC--ceEEEEEcCcc---hHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEEEcchh---
Q 028826 15 IYHVAQPFISTLPD--VKSMLLVGGVE---VKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEAD--- 86 (203)
Q Consensus 15 i~~~~~~l~~~~~~--i~~~~~~~g~~---~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lViDEad--- 86 (203)
..+=++++.+.+ + +.+..+.+... ..+..+.+.++++|+||++...+.+.+.. -.-...++.++++|..-
T Consensus 46 ~~~G~~~~~~~~-G~~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii~~g~~~~~~~~~-vA~~~Pdv~fv~id~~~~~~ 123 (356)
T 3s99_A 46 HDQARKELVEAL-GDKVETTFLENVAEGADAERSIKRIARAGNKLIFTTSFGYMDPTVK-VAKKFPDVKFEHATGYKTAD 123 (356)
T ss_dssp HHHHHHHHHHHH-TTTEEEEEECSCCTTHHHHHHHHHHHHTTCSEEEECSGGGHHHHHH-HHTTCTTSEEEEESCCCCBT
T ss_pred HHHHHHHHHHHh-CCceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHH-HHHHCCCCEEEEEeccccCC
Confidence 344444444443 4 66665554332 33345566678999999998777666544 12233467788777521
Q ss_pred HhhhhchH-HHHH----HHHHhCCCCCcEEEEeeecChhHHHHHHhc
Q 028826 87 RLLDMGFQ-KQIS----YIISRLPKLRRTGLFSATQTEAVEELSKAG 128 (203)
Q Consensus 87 ~l~~~~~~-~~~~----~il~~~~~~~q~i~~SAT~~~~v~~~~~~~ 128 (203)
.+....+. ..-. .+...+.+...+-+++..-.+.+..+..-|
T Consensus 124 Nv~sv~~~~~eg~ylaG~~A~~~tk~~kIGfVgg~~~p~v~~~~~GF 170 (356)
T 3s99_A 124 NMSAYNARFYEGRYVQGVIAAKMSKKGIAGYIGSVPVPEVVQGINSF 170 (356)
T ss_dssp TEEEEEECHHHHHHHHHHHHHHHCSSCEEEEEECCCCHHHHHHHHHH
T ss_pred cEEEEEechhHHHHHHHHHHHHhcCCCEEEEECCCccHHHHHHHHHH
Confidence 11110010 1111 122344555666666665445555544433
No 205
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=50.01 E-value=8.5 Score=27.75 Aligned_cols=42 Identities=14% Similarity=0.082 Sum_probs=28.5
Q ss_pred CCCccEEEEcchhHh--hhhchHHHHHHHHHhCCCCCcEEEEeeecC
Q 028826 74 FRNLVILVLDEADRL--LDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (203)
Q Consensus 74 l~~v~~lViDEad~l--~~~~~~~~~~~il~~~~~~~q~i~~SAT~~ 118 (203)
..+.+++++||++.+ .+..+.+.+..++... .-+++-+.|.+
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~---~~~ilgti~vs 146 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP---GTIILGTIPVP 146 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS---SCCEEEECCCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhCC---CcEEEEEeecC
Confidence 467789999998887 4555777777777632 23454456654
No 206
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=49.78 E-value=22 Score=24.32 Aligned_cols=14 Identities=36% Similarity=0.562 Sum_probs=11.7
Q ss_pred CccEEEEcchhHhh
Q 028826 76 NLVILVLDEADRLL 89 (203)
Q Consensus 76 ~v~~lViDEad~l~ 89 (203)
.-.++++||+|.+.
T Consensus 115 ~~~vl~iDe~~~l~ 128 (195)
T 1jbk_A 115 GNVILFIDELHTMV 128 (195)
T ss_dssp TTEEEEEETGGGGT
T ss_pred CCeEEEEeCHHHHh
Confidence 34589999999986
No 207
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=49.32 E-value=36 Score=31.33 Aligned_cols=75 Identities=11% Similarity=0.007 Sum_probs=48.3
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhc------------------C----C------------CceEEEEEcCcchHHHHHH-
Q 028826 2 GMIISPTRELSAQIYHVAQPFIST------------------L----P------------DVKSMLLVGGVEVKADVKK- 46 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~------------------~----~------------~i~~~~~~~g~~~~~~~~~- 46 (203)
+||+++|+.-|.++...+.+..-. + . ...+...+||....++...
T Consensus 346 ~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve 425 (1010)
T 2xgj_A 346 VIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIE 425 (1010)
T ss_dssp EEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHH
Confidence 799999999988887776552100 0 0 1237788898876554432
Q ss_pred --HHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEEEcc
Q 028826 47 --IEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDE 84 (203)
Q Consensus 47 --l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lViDE 84 (203)
..++..+|||+|.- +. .++|+..+.+ ||+.
T Consensus 426 ~~F~~G~ikVLVAT~~-----la--~GIDiP~~~v-VI~~ 457 (1010)
T 2xgj_A 426 ILFQEGFLKVLFATET-----FS--IGLNMPAKTV-VFTS 457 (1010)
T ss_dssp HHHHTTCCSEEEEEGG-----GG--GSTTCCBSEE-EESC
T ss_pred HHHhcCCCcEEEEehH-----hh--ccCCCCCceE-EEeC
Confidence 23477899999963 22 4678777665 4443
No 208
>3eb9_A 6-phosphogluconolactonase; catalytic mechanism, pentose phosphate pathway, hydrolase, zinc binding site; HET: FLC; 2.00A {Trypanosoma brucei} PDB: 2j0e_A* 3e7f_A*
Probab=48.53 E-value=26 Score=26.75 Aligned_cols=34 Identities=6% Similarity=0.047 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC-----------C-CCeEEEEecc
Q 028826 163 HLEYLECESDKKPSQLVDLLIKN-----------K-SKKIIMYVQH 196 (203)
Q Consensus 163 ~~~~~~~~~~~k~~~l~~ll~~~-----------~-~~~~lIF~ns 196 (203)
++.++.+.+++|.+.+.+.+... . .+.+.+|+..
T Consensus 212 ~~i~ll~~G~~Ka~av~~~l~g~~~~~~pAs~l~~~h~~~~~~~D~ 257 (266)
T 3eb9_A 212 RNVIVLATGAEKKWVVDGILADTAHKAPVARFLRGCEGNVSFLLDK 257 (266)
T ss_dssp SEEEEEECCGGGHHHHHHHHCSSCSSCCGGGGGGGCSSEEEEEEEH
T ss_pred CeEEEEEeCHHHHHHHHHHHhCCCCccchhHHhcCCCCCEEEEEcH
Confidence 45566677889999999998632 1 3466777654
No 209
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=46.80 E-value=22 Score=27.36 Aligned_cols=37 Identities=22% Similarity=0.139 Sum_probs=23.5
Q ss_pred ccEEEEcchhHhhh------hchHHHHHHHHHhCCCCCcEEEEe
Q 028826 77 LVILVLDEADRLLD------MGFQKQISYIISRLPKLRRTGLFS 114 (203)
Q Consensus 77 v~~lViDEad~l~~------~~~~~~~~~il~~~~~~~q~i~~S 114 (203)
--++|+||+|.+.+ ..+...+..+.... ....+++.+
T Consensus 129 ~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~~~il~g 171 (350)
T 2qen_A 129 EFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSL-PNLKIILTG 171 (350)
T ss_dssp CEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHC-TTEEEEEEE
T ss_pred CEEEEEeCHHHHhccCccchhhHHHHHHHHHHhc-CCeEEEEEC
Confidence 34789999999865 23556666666655 344455443
No 210
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=46.78 E-value=13 Score=29.25 Aligned_cols=15 Identities=40% Similarity=0.658 Sum_probs=12.4
Q ss_pred ccEEEEcchhHhhhh
Q 028826 77 LVILVLDEADRLLDM 91 (203)
Q Consensus 77 v~~lViDEad~l~~~ 91 (203)
-.++++||+|.+.+.
T Consensus 129 ~~vlilDE~~~l~~~ 143 (386)
T 2qby_A 129 QVVIVLDEIDAFVKK 143 (386)
T ss_dssp CEEEEEETHHHHHHS
T ss_pred eEEEEEcChhhhhcc
Confidence 558999999999753
No 211
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=45.82 E-value=75 Score=22.26 Aligned_cols=14 Identities=21% Similarity=0.456 Sum_probs=10.8
Q ss_pred CCccEEEEcchhHh
Q 028826 75 RNLVILVLDEADRL 88 (203)
Q Consensus 75 ~~v~~lViDEad~l 88 (203)
.+..++++||++..
T Consensus 114 ~~~~~lilDei~~~ 127 (202)
T 2w58_A 114 KKVPVLMLDDLGAE 127 (202)
T ss_dssp HHSSEEEEEEECCC
T ss_pred cCCCEEEEcCCCCC
Confidence 34579999999764
No 212
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=45.03 E-value=99 Score=26.64 Aligned_cols=71 Identities=13% Similarity=0.087 Sum_probs=47.7
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHH--hCC-C---eEEEeccHHHHHHHHhCCCccCC
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIE--EEG-A---NLLIGTPGRLYDIMERMDVLDFR 75 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~--~~~-~---~ilV~Tp~~l~~~~~~~~~~~l~ 75 (203)
+||++..++.+..+...+... ++.+..+.|+.+..+....+. +.+ . -++++|- .. . .++++.
T Consensus 419 ~lIFs~~~~~~~~l~~~l~~~-----g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~-a~-----g-~Glnl~ 486 (644)
T 1z3i_X 419 VVLVSNYTQTLDLFEKLCRNR-----RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSK-AG-----G-CGLNLI 486 (644)
T ss_dssp EEEEESCHHHHHHHHHHHHHH-----TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGG-GS-----C-TTCCCT
T ss_pred EEEEEccHHHHHHHHHHHHHC-----CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecc-cc-----c-CCcccc
Confidence 688899988887777766654 688889999987666555442 222 2 2555553 21 1 568888
Q ss_pred CccEEEEcc
Q 028826 76 NLVILVLDE 84 (203)
Q Consensus 76 ~v~~lViDE 84 (203)
.+..+|+=+
T Consensus 487 ~a~~Vi~~d 495 (644)
T 1z3i_X 487 GANRLVMFD 495 (644)
T ss_dssp TEEEEEECS
T ss_pred cCCEEEEEC
Confidence 888888743
No 213
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=44.79 E-value=20 Score=28.67 Aligned_cols=32 Identities=31% Similarity=0.280 Sum_probs=23.1
Q ss_pred CCccEEEEcchhHhhh---hchHHHHHHHHHhCCC
Q 028826 75 RNLVILVLDEADRLLD---MGFQKQISYIISRLPK 106 (203)
Q Consensus 75 ~~v~~lViDEad~l~~---~~~~~~~~~il~~~~~ 106 (203)
..-.++|+||||.+++ ..+.+.+..+++...+
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk 295 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRK 295 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGG
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhh
Confidence 3467999999999985 2355667777777643
No 214
>3oc6_A 6-phosphogluconolactonase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, carboxylic ester hydrolase; 2.10A {Mycobacterium smegmatis}
Probab=44.34 E-value=38 Score=25.47 Aligned_cols=129 Identities=14% Similarity=0.121 Sum_probs=67.8
Q ss_pred CCccCCCccEEEEcchhHhh---hhchHHHH-HHHHHhCC-CCCcEEEEeeec-----C--hhHH---HHHHhc----CC
Q 028826 70 DVLDFRNLVILVLDEADRLL---DMGFQKQI-SYIISRLP-KLRRTGLFSATQ-----T--EAVE---ELSKAG----LR 130 (203)
Q Consensus 70 ~~~~l~~v~~lViDEad~l~---~~~~~~~~-~~il~~~~-~~~q~i~~SAT~-----~--~~v~---~~~~~~----l~ 130 (203)
..++.+++.++-+||-- +- ...+...+ +.++..++ +..|+..+-... + .... +.++.+ ..
T Consensus 63 ~~idw~~v~~f~~DEr~-vp~~~~~Sn~~~~~~~ll~~v~i~~~~i~~~~~~~~~~~~~~~~~a~~Ye~~i~~~~~~~~~ 141 (248)
T 3oc6_A 63 GEIDWSKVHIYWGDERF-VPQDDDERNDKQAREALLDHIGIPPVNVHAMAASDGEFGDDLEAAAAGYAQLLSANFDSSVP 141 (248)
T ss_dssp GGSCGGGEEEEESEEEC-SCTTCTTCHHHHHHHHTGGGSCCCGGGBCCCCCTTSTTTTCHHHHHHHHHHHHHHHHTSSSC
T ss_pred cCCCcceEEEEEeeecc-CCCCChHHHHHHHHHHhhccCCCChhhEEecCCcccccCCCHHHHHHHHHHHHHHhcccCCC
Confidence 35789999999999952 21 12244444 35566664 233444432221 1 1111 223321 23
Q ss_pred CCeEEEeccCccccccc--chhh-------h-hcc---CCCCC-----------ceeEEEEEcCCCCcHHHHHHHHhcC-
Q 028826 131 NPVRIEVRAESKSHHAS--ASSQ-------Q-LAS---SKTPL-----------GLHLEYLECESDKKPSQLVDLLIKN- 185 (203)
Q Consensus 131 ~~~~i~~~~~~~~~~~~--~~~~-------~-~~~---~~~~~-----------~i~~~~~~~~~~~k~~~l~~ll~~~- 185 (203)
....+..+.+.++|-++ +... + ... ...|. +-++.++.+.+++|.+.+.+.+...
T Consensus 142 ~~Dl~lLG~G~dGH~aslfPg~~~~~~~~~~vv~~~~~~~~P~~riTlt~~~I~~Ar~i~ll~~G~~Ka~av~~~l~g~~ 221 (248)
T 3oc6_A 142 GFDVHLLGMGGEGHVNSLFPDTDAVRETERLVVGVSDSPKPPPRRITLTLPAVQNSREVWLVVSGEAKADAVAAAVGGAD 221 (248)
T ss_dssp SEEEEEECCCTTCCBTTBCTTCHHHHCSSCSEEEESCCSSSSSCEEEECHHHHTTEEEEEEEECSGGGHHHHHHHHHTCC
T ss_pred CCCEEEECCCCCCCEEEcCCCChhhccCcceEEEecCCCCCCCcEEEcCHHHHHhhCeEEEEEeCHHHHHHHHHHHcCCC
Confidence 34566667776666664 1110 0 000 11111 1255666778899999999999732
Q ss_pred ----------CCCeEEEEeccCCc
Q 028826 186 ----------KSKKIIMYVQHGNF 199 (203)
Q Consensus 186 ----------~~~~~lIF~ns~~~ 199 (203)
....+.+|+.....
T Consensus 222 ~~~~Pas~l~~h~~~~~~~D~~Aa 245 (248)
T 3oc6_A 222 PVDIPAAGAVGRERTVWLVDEAAA 245 (248)
T ss_dssp TTTSGGGGCCCSSEEEEEEETTTT
T ss_pred CCCCChHHhccCCCEEEEEchHHh
Confidence 23457888776543
No 215
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=43.90 E-value=32 Score=28.24 Aligned_cols=37 Identities=19% Similarity=0.263 Sum_probs=25.2
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEe
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~S 114 (203)
+.+.+++|+||++.+ + ...+..++..++...++++++
T Consensus 126 ~~~~~~iiiDE~~~~-~---~~~~~~l~~~~~~~~~~~~vG 162 (459)
T 3upu_A 126 LAKCRVLICDEVSMY-D---RKLFKILLSTIPPWCTIIGIG 162 (459)
T ss_dssp CSSCSEEEESCGGGC-C---HHHHHHHHHHSCTTCEEEEEE
T ss_pred ccCCCEEEEECchhC-C---HHHHHHHHHhccCCCEEEEEC
Confidence 457899999999865 2 234555666666666666665
No 216
>3tx2_A Probable 6-phosphogluconolactonase; ssgcid, hydrolase; 1.50A {Mycobacterium abscessus}
Probab=43.66 E-value=39 Score=25.47 Aligned_cols=129 Identities=14% Similarity=0.122 Sum_probs=67.4
Q ss_pred CCccCCCccEEEEcchhHhhh---hchHHHH-HHHHHhCC-CCCcEEEEeeec-----C--hhH---HHHHHhcC-----
Q 028826 70 DVLDFRNLVILVLDEADRLLD---MGFQKQI-SYIISRLP-KLRRTGLFSATQ-----T--EAV---EELSKAGL----- 129 (203)
Q Consensus 70 ~~~~l~~v~~lViDEad~l~~---~~~~~~~-~~il~~~~-~~~q~i~~SAT~-----~--~~v---~~~~~~~l----- 129 (203)
..++.+++.++-+||-- +-. ..+...+ +.++..++ +..|+..+-.+. + ... ++.++.++
T Consensus 63 ~~idw~~v~~f~~DEr~-vp~~~~~Sn~~~~~~~ll~~v~i~~~~i~~~~~~~~~~~~~~~~~a~~Ye~~i~~~~~~~~~ 141 (251)
T 3tx2_A 63 SGLDWTNVHVFWGDDRY-VPKTDPERNAWQAWEALLEHVNFPLRNMHAMPNSESEYGTDLDAAALAYEQLLAANAEPGQD 141 (251)
T ss_dssp TTSCGGGEEEEESEEES-SCTTCTTCHHHHHHHHTGGGSCCCGGGBCCCCCTTSSCTTCHHHHHHHHHHHHHHTSCTTCS
T ss_pred cCCCCceeEEEeeeecc-CCCCChHHHHHHHHHHhhccCCCCHHHEEECCCcccccCCCHHHHHHHHHHHHHhhhccccC
Confidence 46889999999999952 211 2244444 34566664 223444432221 1 111 22333322
Q ss_pred -CCCeEEEeccCccccccc--chhh-------h-hc--c-CCCC-Cc----------eeEEEEEcCCCCcHHHHHHHHhc
Q 028826 130 -RNPVRIEVRAESKSHHAS--ASSQ-------Q-LA--S-SKTP-LG----------LHLEYLECESDKKPSQLVDLLIK 184 (203)
Q Consensus 130 -~~~~~i~~~~~~~~~~~~--~~~~-------~-~~--~-~~~~-~~----------i~~~~~~~~~~~k~~~l~~ll~~ 184 (203)
.....+..+.+.++|-++ +... + .. . ...| .. -++.++.+.+++|.+.+.+.++.
T Consensus 142 ~~~~Dl~lLG~G~DGH~as~fPg~~~~~~~~~~vv~~~~~~~~P~~riTlt~~~I~~Ar~i~ll~~G~~Ka~av~~~l~g 221 (251)
T 3tx2_A 142 CPAFDVHLLGMGGEGHINSLFPHTDAVKETQRLVVAVPDSPKPPPQRITLTLPAIQRSREVWLVVSGEAKADAVAAAVGG 221 (251)
T ss_dssp SCCCSEEEECCCTTCCBTTBCTTCHHHHCSSCSEEEESCCSSSSSCEEEECHHHHTTSSEEEEEECSGGGHHHHHHHHTT
T ss_pred CCCCCEEEECCCCCCceEEcCCcChhhccCcceEEEecCCCCCCCcEEEECHHHHHhcCeEEEEEeCHHHHHHHHHHHhC
Confidence 233566666666666664 1111 0 00 0 0111 11 14556667788999999999963
Q ss_pred C-----------CCCeEEEEeccCCc
Q 028826 185 N-----------KSKKIIMYVQHGNF 199 (203)
Q Consensus 185 ~-----------~~~~~lIF~ns~~~ 199 (203)
. ....+.+|+.....
T Consensus 222 ~~~~~~Pas~l~~h~~~~~~~D~~Aa 247 (251)
T 3tx2_A 222 ADPVDVPAAGAKGIERTVWLLDEAAA 247 (251)
T ss_dssp CCTTTSGGGGCCCSSEEEEEEETTTT
T ss_pred CCCCCCChHHhccCCCEEEEEeHHHH
Confidence 2 23357888876544
No 217
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=43.34 E-value=18 Score=28.27 Aligned_cols=42 Identities=19% Similarity=0.166 Sum_probs=32.2
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeee
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 116 (203)
.+-.++++||...-++......+..++..+....|+++.|-.
T Consensus 240 ~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~ 281 (322)
T 1e69_A 240 KPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHN 281 (322)
T ss_dssp SCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 456799999998888877777888887777556677776654
No 218
>1vl1_A 6PGL, 6-phosphogluconolactonase; TM1154, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO hydrolase; HET: CIT; 1.55A {Thermotoga maritima} SCOP: c.124.1.1 PDB: 1pbt_A
Probab=43.16 E-value=44 Score=24.86 Aligned_cols=125 Identities=14% Similarity=0.130 Sum_probs=59.2
Q ss_pred ccHHHHHHHHhCCCccCCCccEEEEcchhHhh-h--hchHHHH-HHHHHhCC-CCCcEEEEeeecCh--hH---HHHHHh
Q 028826 58 TPGRLYDIMERMDVLDFRNLVILVLDEADRLL-D--MGFQKQI-SYIISRLP-KLRRTGLFSATQTE--AV---EELSKA 127 (203)
Q Consensus 58 Tp~~l~~~~~~~~~~~l~~v~~lViDEad~l~-~--~~~~~~~-~~il~~~~-~~~q~i~~SAT~~~--~v---~~~~~~ 127 (203)
||..+++.+.. ..++.+++.++-+||-= +- + ..+...+ +.+++.++ +..|+.......++ .. ++.++.
T Consensus 56 Tp~~ly~~L~~-~~i~w~~v~~f~~DEr~-vp~~~~~Sn~~~~~~~l~~~v~i~~~~i~~~~~~~~~e~~~~~y~~~i~~ 133 (232)
T 1vl1_A 56 TPLPVYEKLAE-QKFPWNRIHFFLSDERY-VPLDSDQSNFRNINEVLFSRAKIPSGNVHYVDTSLPIEKACEKYEREIRS 133 (232)
T ss_dssp THHHHHHHHTT-SCCCGGGEEEEESEEES-SCTTSTTCHHHHHHHHTTTTSCCCGGGEECCCTTSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHH-cCCChhHEEEEeCeEee-cCCCChHHHHHHHHHHHhccCCCCHHHEecCCCCCCHHHHHHHHHHHHHh
Confidence 34455555544 45788899999999942 21 1 1233333 33444543 23344443322222 11 122332
Q ss_pred cCCCCeEEEeccCccccccc--c-hhhh-------hc-cCCCC-----------CceeEEEEEcCCCCcHHHHHHHHhc
Q 028826 128 GLRNPVRIEVRAESKSHHAS--A-SSQQ-------LA-SSKTP-----------LGLHLEYLECESDKKPSQLVDLLIK 184 (203)
Q Consensus 128 ~l~~~~~i~~~~~~~~~~~~--~-~~~~-------~~-~~~~~-----------~~i~~~~~~~~~~~k~~~l~~ll~~ 184 (203)
..+....+.++.+.++|-++ + .... +. ....| .+-++.++.+.+++|.+.+...++.
T Consensus 134 ~~~~~Dl~lLGiG~dGH~aslfP~g~~~l~~~~~~v~~~~~~p~~rITltl~~I~~A~~iilla~G~~Ka~av~~~l~g 212 (232)
T 1vl1_A 134 ATDQFDLAILGMGPDGHVASIFDLETGNKDNLVTFTDPSGDPKVPRVTLTFRALNTSLYVLFLIRGKEKINRLTEILKD 212 (232)
T ss_dssp HCSSCSEEEECCCTTSCBTTBCSHHHHTCSSSEEECSSBTTTTBCEEEECHHHHTTCSEEEEEEESHHHHHHHHHHHTT
T ss_pred cCCCCCEEEEecCCCCchhhccCCCCcccccCCcEEecCCCCCCCEEECCHHHHHhCCEEEEEEcCHHHHHHHHHHHhC
Confidence 12334445555544444443 2 1110 00 00111 1225556666788899999888864
No 219
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=42.99 E-value=39 Score=28.23 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=27.5
Q ss_pred ccEEEEcchhHhhhh----------chHHHHHHHHHhCCCCCcEEEEeeecCh
Q 028826 77 LVILVLDEADRLLDM----------GFQKQISYIISRLPKLRRTGLFSATQTE 119 (203)
Q Consensus 77 v~~lViDEad~l~~~----------~~~~~~~~il~~~~~~~q~i~~SAT~~~ 119 (203)
-.++++||+|.+... .....+..++..+.....++++.||-.+
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 358999999998742 1233444555555556667777777544
No 220
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=42.77 E-value=36 Score=26.36 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=12.2
Q ss_pred CccEEEEcchhHhhh
Q 028826 76 NLVILVLDEADRLLD 90 (203)
Q Consensus 76 ~v~~lViDEad~l~~ 90 (203)
.-.++++||+|.+..
T Consensus 110 ~~~vl~iDEid~l~~ 124 (322)
T 3eie_A 110 KPSIIFIDQVDALTG 124 (322)
T ss_dssp SSEEEEEECGGGGSC
T ss_pred CCeEEEechhhhhhc
Confidence 346999999999864
No 221
>3ico_A 6PGL, 6-phosphogluconolactonase; ssgcid, infectious disease, niaid, hydrolase, structural genomics; 2.15A {Mycobacterium tuberculosis}
Probab=41.82 E-value=36 Score=25.99 Aligned_cols=126 Identities=13% Similarity=0.117 Sum_probs=66.0
Q ss_pred CCccCCCccEEEEcchhHhh---hhchHHHH-HHHHHhCC-CCCcEEEEeeec-----C--hhH---HHHHHhcC-----
Q 028826 70 DVLDFRNLVILVLDEADRLL---DMGFQKQI-SYIISRLP-KLRRTGLFSATQ-----T--EAV---EELSKAGL----- 129 (203)
Q Consensus 70 ~~~~l~~v~~lViDEad~l~---~~~~~~~~-~~il~~~~-~~~q~i~~SAT~-----~--~~v---~~~~~~~l----- 129 (203)
..++.+++.++-+||-= +- ...+...+ +.++..++ +..|+...-.+. + ... ++.++...
T Consensus 79 ~~idw~~v~~f~~DEr~-vp~~~~~Sn~~~~~~~Ll~~v~i~~~~i~~~~~~~~~~~~~~~~~a~~Ye~~i~~~~~~~~~ 157 (268)
T 3ico_A 79 QQIEWSKVHLFWGDERY-VPEDDDERNLKQARRALLNHVDIPSNQVHPMAASDGDFGGDLDAAALAYEQVLAASAAPGDP 157 (268)
T ss_dssp GGSCGGGEEEEESEEEC-SCTTCTTCHHHHHHHHTGGGSCCCGGGBCCCCCTTSTTTTCHHHHHHHHHHHHHHHSSTTCS
T ss_pred hhhhheeeEEeeccccc-CCCCcchhHHHHHHHHHHhccCCcccccccccccCCCcccchhHHHHHHHHHHhhccCCCCC
Confidence 46889999999999952 21 12244444 35566664 233554443321 1 111 22333332
Q ss_pred -CCCeEEEeccCccccccc--chhh----------hhcc-CCCCC-----------ceeEEEEEcCCCCcHHHHHHHHhc
Q 028826 130 -RNPVRIEVRAESKSHHAS--ASSQ----------QLAS-SKTPL-----------GLHLEYLECESDKKPSQLVDLLIK 184 (203)
Q Consensus 130 -~~~~~i~~~~~~~~~~~~--~~~~----------~~~~-~~~~~-----------~i~~~~~~~~~~~k~~~l~~ll~~ 184 (203)
+....+..+-+.++|-++ +... .... ...|. +-++.++.+.+++|.+.+.+.++.
T Consensus 158 ~p~~Dl~lLGmG~DGH~as~fPg~~~~~~t~~~vv~~~~~~~~P~~rITlt~~~I~~Ar~i~ll~~G~~Ka~av~~~l~g 237 (268)
T 3ico_A 158 APNFDVHLLGMGPEGHINSLFPHSPAVLESTRMVVAVDDSPKPPPRRITLTLPAIQRSREVWLLVSGPGKADAVAAAIGG 237 (268)
T ss_dssp SCCCSEEEECCCTTCCBTTBCTTCHHHHCSSCSEEEESCCSSSSSCEEEECHHHHTTSSEEEEEECSGGGHHHHHHHHTT
T ss_pred CCCcceEEeccCCcccccccCCCChhhhhhceEEEEecCCCCCCCceEEEechhhhccceEEEEecCCCchHHHHHHhcC
Confidence 234566666666666664 1111 0000 11111 124556667889999999999963
Q ss_pred C-----------CCCeEEEEecc
Q 028826 185 N-----------KSKKIIMYVQH 196 (203)
Q Consensus 185 ~-----------~~~~~lIF~ns 196 (203)
. ..+.+.+|+..
T Consensus 238 ~~~~~~Pas~l~~h~~~~~~lD~ 260 (268)
T 3ico_A 238 ADPVSVPAAGAVGRQNTLWLLDR 260 (268)
T ss_dssp CCTTTSGGGGCCCSSEEEEEEEH
T ss_pred CCCccccccccccccceEEEecc
Confidence 2 23467777754
No 222
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=41.48 E-value=42 Score=26.58 Aligned_cols=14 Identities=29% Similarity=0.655 Sum_probs=11.6
Q ss_pred ccEEEEcchhHhhh
Q 028826 77 LVILVLDEADRLLD 90 (203)
Q Consensus 77 v~~lViDEad~l~~ 90 (203)
--++|+||+|.+..
T Consensus 139 ~~llvlDe~~~l~~ 152 (412)
T 1w5s_A 139 YLLVILDEFQSMLS 152 (412)
T ss_dssp EEEEEEESTHHHHS
T ss_pred eEEEEEeCHHHHhh
Confidence 44899999999865
No 223
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=40.44 E-value=40 Score=25.81 Aligned_cols=42 Identities=19% Similarity=0.228 Sum_probs=24.0
Q ss_pred ccEEEEcchhHhhhhc-------------hHHHHHHHHHhCCCCCcEEEEeeecC
Q 028826 77 LVILVLDEADRLLDMG-------------FQKQISYIISRLPKLRRTGLFSATQT 118 (203)
Q Consensus 77 v~~lViDEad~l~~~~-------------~~~~~~~il~~~~~~~q~i~~SAT~~ 118 (203)
-.++++||+|.+.... ....+...+..+.....++++.+|-.
T Consensus 109 p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~ 163 (301)
T 3cf0_A 109 PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNR 163 (301)
T ss_dssp SEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESC
T ss_pred CeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCC
Confidence 4699999999986321 12333333444444455666666643
No 224
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=39.90 E-value=18 Score=27.56 Aligned_cols=16 Identities=44% Similarity=0.561 Sum_probs=13.2
Q ss_pred CCccEEEEcchhHhhh
Q 028826 75 RNLVILVLDEADRLLD 90 (203)
Q Consensus 75 ~~v~~lViDEad~l~~ 90 (203)
.+-+++++||+|.+..
T Consensus 101 ~~~~vliiDe~~~l~~ 116 (319)
T 2chq_A 101 APFKIIFLDEADALTA 116 (319)
T ss_dssp CCCEEEEEETGGGSCH
T ss_pred CCceEEEEeCCCcCCH
Confidence 5578999999998853
No 225
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=39.63 E-value=12 Score=29.48 Aligned_cols=25 Identities=24% Similarity=0.220 Sum_probs=16.0
Q ss_pred ccEEEEcchhHhhhhchHHHHHHHHH
Q 028826 77 LVILVLDEADRLLDMGFQKQISYIIS 102 (203)
Q Consensus 77 v~~lViDEad~l~~~~~~~~~~~il~ 102 (203)
-.++++||+|.+ +......+..++.
T Consensus 126 ~~vlilDE~~~l-~~~~~~~L~~~~~ 150 (389)
T 1fnn_A 126 YMFLVLDDAFNL-APDILSTFIRLGQ 150 (389)
T ss_dssp CEEEEEETGGGS-CHHHHHHHHHHTT
T ss_pred eEEEEEECcccc-chHHHHHHHHHHH
Confidence 559999999988 4333444444443
No 226
>3css_A 6-phosphogluconolactonase; structural genomics, medical structural genomics of pathogen protozoa consortium, SGPP, leish hydrolase; 1.70A {Leishmania braziliensis} PDB: 3ch7_A
Probab=38.94 E-value=64 Score=24.47 Aligned_cols=92 Identities=16% Similarity=0.107 Sum_probs=47.7
Q ss_pred EEEcCcHH-HHHHHHHHHHHhhhcC---CCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCcc
Q 028826 3 MIISPTRE-LSAQIYHVAQPFISTL---PDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (203)
Q Consensus 3 lil~Ptre-La~Qi~~~~~~l~~~~---~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~ 78 (203)
+++.++.+ ++....+.+.+..... .+--+..+.||.+...-.+.|.. . .. +.++.+++.
T Consensus 8 ~~~~~~~~~l~~~aA~~i~~~i~~a~~~~~~~~l~LsgGstp~~ly~~L~~---------------~-~~-~~i~w~~v~ 70 (267)
T 3css_A 8 VKICENLSQMSFAAREVILAAIDARVDKSVPVVLALSGGSTPKRLYEELHE---------------K-DL-ALLQQHAVQ 70 (267)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHHTCSSTTSCEEEEECCSSTTHHHHHHHHH---------------H-SH-HHHHTTCEE
T ss_pred EEEeCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHHHHH---------------h-cc-cCCChhHeE
Confidence 67778865 6666665554443321 12335566666554444433321 1 11 357788999
Q ss_pred EEEEcchhHhh-h--hchHHHH-HHHHHhCCCCCcEEEE
Q 028826 79 ILVLDEADRLL-D--MGFQKQI-SYIISRLPKLRRTGLF 113 (203)
Q Consensus 79 ~lViDEad~l~-~--~~~~~~~-~~il~~~~~~~q~i~~ 113 (203)
++-+||-= +- + ..+...+ +.++..++ ..|+...
T Consensus 71 ~f~~DEr~-vp~~~~~Sn~~~~~~~ll~~~~-~~~i~~~ 107 (267)
T 3css_A 71 FILGDERL-LSEDDEQSNFSMATKALLRDVP-SSDVISI 107 (267)
T ss_dssp EEESEEES-SCTTSTTSHHHHHHHHTGGGSC-GGGBCCC
T ss_pred EEeeeeec-cCCCCHHHHHHHHHHHHhccCC-HHHEEeC
Confidence 99999942 21 1 1233333 35566665 4454443
No 227
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=38.53 E-value=24 Score=28.78 Aligned_cols=41 Identities=27% Similarity=0.229 Sum_probs=32.5
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCC-CCcEEEEee
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPK-LRRTGLFSA 115 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~-~~q~i~~SA 115 (203)
.+-.++++||.+.-+|......+..++..+.. ..|+++.|-
T Consensus 354 ~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th 395 (430)
T 1w1w_A 354 QPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISL 395 (430)
T ss_dssp SCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECS
T ss_pred CCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEEC
Confidence 56789999999998988888888888877643 567777764
No 228
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=37.43 E-value=58 Score=29.44 Aligned_cols=53 Identities=13% Similarity=0.030 Sum_probs=37.0
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHh-CCCeEEEecc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEE-EGANLLIGTP 59 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~-~~~~ilV~Tp 59 (203)
+||.+.|++-+..+...+++- |++...++|+....+....... ....|+|+|.
T Consensus 444 vLVft~sie~se~Ls~~L~~~-----gi~~~vLnak~~~rEa~iia~agr~G~VtIATn 497 (853)
T 2fsf_A 444 VLVGTISIEKSELVSNELTKA-----GIKHNVLNAKFHANEAAIVAQAGYPAAVTIATN 497 (853)
T ss_dssp EEEEESSHHHHHHHHHHHHHT-----TCCCEECCTTCHHHHHHHHHTTTSTTCEEEEES
T ss_pred EEEEECcHHHHHHHHHHHHHC-----CCCEEEecCChhHHHHHHHHhcCCCCeEEEecc
Confidence 799999999999888877774 7888888887543322211111 2357999996
No 229
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=37.27 E-value=29 Score=31.77 Aligned_cols=76 Identities=9% Similarity=0.019 Sum_probs=47.9
Q ss_pred cEEEEeeecChhHHHHHHhcCCCCeEEEeccCcccccccchhhhhccCCCCCceeEEEEEcCCCCcHHHHHHHHhc--CC
Q 028826 109 RTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEYLECESDKKPSQLVDLLIK--NK 186 (203)
Q Consensus 109 q~i~~SAT~~~~v~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~--~~ 186 (203)
...++|.|...+..+|.+.|--+- +.++... .... .-....++.+..+|..++.+-+.. ..
T Consensus 380 kLsGMTGTA~tE~~Ef~~iY~l~V--v~IPTn~--------------p~~R-~D~~d~vy~t~~~K~~AIv~eI~~~~~~ 442 (997)
T 2ipc_A 380 KRAGMTGTAKTEEKEFQEIYGMDV--VVVPTNR--------------PVIR-KDFPDVVYRTEKGKFYAVVEEIAEKYER 442 (997)
T ss_dssp EEEEEESSCGGGHHHHHHHHCCCE--EECCCSS--------------CCCC-EEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred HheecCCCchHHHHHHHHHhCCCE--EEcCCCC--------------Cccc-ccCCCeEEcCHHHHHHHHHHHHHHHHHC
Confidence 577888998888788888776653 3344331 1111 112223334566788887766653 25
Q ss_pred CCeEEEEeccCCccc
Q 028826 187 SKKIIMYVQHGNFSE 201 (203)
Q Consensus 187 ~~~~lIF~ns~~~~e 201 (203)
++|+||+|.|.+.+|
T Consensus 443 GqPVLVgT~SIe~SE 457 (997)
T 2ipc_A 443 GQPVLVGTISIEKSE 457 (997)
T ss_dssp TCCEEEECSSHHHHH
T ss_pred CCCEEEEeCCHHHHH
Confidence 789999999977655
No 230
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=36.06 E-value=30 Score=27.03 Aligned_cols=65 Identities=12% Similarity=0.016 Sum_probs=37.3
Q ss_pred CCCccEEEEcchhH-hhhhchHHHHHHHHHhCCCCCcEEEEeeecChh--HHHHHHhcCCCCeEEEecc
Q 028826 74 FRNLVILVLDEADR-LLDMGFQKQISYIISRLPKLRRTGLFSATQTEA--VEELSKAGLRNPVRIEVRA 139 (203)
Q Consensus 74 l~~v~~lViDEad~-l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~~--v~~~~~~~l~~~~~i~~~~ 139 (203)
+++-+++|+||+|. +-. .....+...++..|....+|+.+.+.++. -..+.......-..+....
T Consensus 74 f~~~kvvii~~~~~kl~~-~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~ 141 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNA-AINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQT 141 (343)
T ss_dssp CCSCEEEEEECCSSCCCT-THHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECC
T ss_pred ccCCeEEEEECCCCCCCh-HHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeC
Confidence 56789999999998 633 34555666677666566666655444321 1234444434334444433
No 231
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=35.52 E-value=35 Score=29.48 Aligned_cols=21 Identities=5% Similarity=-0.015 Sum_probs=16.2
Q ss_pred EEEEcCcHHHHHHHHHHHHHh
Q 028826 2 GMIISPTRELSAQIYHVAQPF 22 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l 22 (203)
.|+.+||..-+.++.+.+...
T Consensus 236 ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 236 VLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp EEEEESSHHHHHHHHHHHHHT
T ss_pred EEEEcCchHHHHHHHHHHHhc
Confidence 589999998888877666543
No 232
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=35.49 E-value=80 Score=28.78 Aligned_cols=53 Identities=9% Similarity=-0.020 Sum_probs=37.1
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHh-CCCeEEEecc
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEE-EGANLLIGTP 59 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~-~~~~ilV~Tp 59 (203)
+||.+.|++-+..+...+++. |++...++|+....+....... ....|+|+|.
T Consensus 463 vLVft~Sie~sE~Ls~~L~~~-----Gi~~~vLnak~~~rEa~iia~agr~G~VtIATn 516 (922)
T 1nkt_A 463 VLIGTTSVERSEYLSRQFTKR-----RIPHNVLNAKYHEQEATIIAVAGRRGGVTVATN 516 (922)
T ss_dssp EEEEESCHHHHHHHHHHHHHT-----TCCCEEECSSCHHHHHHHHHTTTSTTCEEEEET
T ss_pred EEEEECCHHHHHHHHHHHHHC-----CCCEEEecCChhHHHHHHHHhcCCCCeEEEecc
Confidence 799999999999888877774 7888888888543322111111 2358999994
No 233
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=35.34 E-value=58 Score=24.52 Aligned_cols=15 Identities=40% Similarity=0.634 Sum_probs=12.5
Q ss_pred CccEEEEcchhHhhh
Q 028826 76 NLVILVLDEADRLLD 90 (203)
Q Consensus 76 ~v~~lViDEad~l~~ 90 (203)
.-.++++||+|.+..
T Consensus 113 ~~~vl~iDEid~l~~ 127 (297)
T 3b9p_A 113 QPSIIFIDEVDSLLS 127 (297)
T ss_dssp CSEEEEEETGGGTSB
T ss_pred CCcEEEeccHHHhcc
Confidence 457999999999864
No 234
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=34.82 E-value=44 Score=25.65 Aligned_cols=38 Identities=26% Similarity=0.368 Sum_probs=24.1
Q ss_pred ccEEEEcchhHhhh---hchHHHHHHHHHhCCCCCcEEEEee
Q 028826 77 LVILVLDEADRLLD---MGFQKQISYIISRLPKLRRTGLFSA 115 (203)
Q Consensus 77 v~~lViDEad~l~~---~~~~~~~~~il~~~~~~~q~i~~SA 115 (203)
--++|+||+|.+.+ ..+...+..+....+ ...+++.+.
T Consensus 138 ~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~g~ 178 (357)
T 2fna_A 138 NVIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RIKFIMSGS 178 (357)
T ss_dssp CEEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TEEEEEEES
T ss_pred CeEEEEECHHHhhccCchhHHHHHHHHHHcCC-CeEEEEEcC
Confidence 34899999999864 346667777766542 344444433
No 235
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=34.44 E-value=1.3e+02 Score=26.74 Aligned_cols=113 Identities=14% Similarity=0.049 Sum_probs=68.9
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhC---CCe---EEEeccHHHHHHHHhCCCccCC
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEE---GAN---LLIGTPGRLYDIMERMDVLDFR 75 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~---~~~---ilV~Tp~~l~~~~~~~~~~~l~ 75 (203)
+||++..+..+..+.+.+... ++++..+.|+.+..++...+..- ... +|++| ... . .++++.
T Consensus 575 vLIFsq~~~~ld~L~~~L~~~-----g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt-~ag-----g-~GlNL~ 642 (800)
T 3mwy_W 575 VLIFSQMVRMLDILGDYLSIK-----GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLST-RAG-----G-LGINLM 642 (800)
T ss_dssp EEEEESCHHHHHHHHHHHHHH-----TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEH-HHH-----T-TTCCCT
T ss_pred EEEEechHHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEec-ccc-----c-CCCCcc
Confidence 688888888877777766554 67888899998877776665431 223 55554 222 2 578999
Q ss_pred CccEEEEcchhHhhhhchHHHHHHHHHhCC--CCCc----EEEEeeecChhHHHHHHhcCC
Q 028826 76 NLVILVLDEADRLLDMGFQKQISYIISRLP--KLRR----TGLFSATQTEAVEELSKAGLR 130 (203)
Q Consensus 76 ~v~~lViDEad~l~~~~~~~~~~~il~~~~--~~~q----~i~~SAT~~~~v~~~~~~~l~ 130 (203)
....+|+=+. .|.....++.+-+... +..+ .++...|+...+.+.+..-+.
T Consensus 643 ~a~~VI~~D~----~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~ 699 (800)
T 3mwy_W 643 TADTVVIFDS----DWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMI 699 (800)
T ss_dssp TCCEEEESSC----CSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTT
T ss_pred ccceEEEecC----CCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHH
Confidence 9999987333 2444555554433332 2222 244555666666665554433
No 236
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=34.08 E-value=61 Score=23.71 Aligned_cols=13 Identities=31% Similarity=0.365 Sum_probs=7.9
Q ss_pred ccEEEEcchhHhh
Q 028826 77 LVILVLDEADRLL 89 (203)
Q Consensus 77 v~~lViDEad~l~ 89 (203)
-.++++||+|.+.
T Consensus 99 ~~vl~iDeid~l~ 111 (262)
T 2qz4_A 99 PCIVYIDEIDAVG 111 (262)
T ss_dssp SEEEEEECC----
T ss_pred CeEEEEeCcchhh
Confidence 4699999999985
No 237
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=33.84 E-value=44 Score=27.94 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=25.7
Q ss_pred CCccEEEEcchhHhhhh--chHHHHHHHHHhCCCCCcEEEEeeec
Q 028826 75 RNLVILVLDEADRLLDM--GFQKQISYIISRLPKLRRTGLFSATQ 117 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~--~~~~~~~~il~~~~~~~q~i~~SAT~ 117 (203)
..-.+++|||+|.+... +....+..++... ...+++.+++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCC
Confidence 34579999999998643 2334555555543 34566666654
No 238
>2x9q_A Cyclodipeptide synthetase; ligase; 2.02A {Mycobacterium tuberculosis}
Probab=33.76 E-value=27 Score=26.97 Aligned_cols=49 Identities=24% Similarity=0.346 Sum_probs=36.3
Q ss_pred HHHHHhCCCeEEEe--------ccHHHHHHHHhCCCccCCCccEEEEcc--hhHhhhhch
Q 028826 44 VKKIEEEGANLLIG--------TPGRLYDIMERMDVLDFRNLVILVLDE--ADRLLDMGF 93 (203)
Q Consensus 44 ~~~l~~~~~~ilV~--------Tp~~l~~~~~~~~~~~l~~v~~lViDE--ad~l~~~~~ 93 (203)
=+.+.+++-|++|| |.++|.+++.. ..-.+.++++++-|| ++.+...|+
T Consensus 73 C~~I~~r~~HaliGISPfNSyFS~dri~~Li~W-a~~~F~~VdVl~~d~~~~~tl~AlG~ 131 (289)
T 2x9q_A 73 CQIIHTEGDHAVIGVSPGNSYFSRQRLRDLGLW-GLTNFDRVDFVYTDVHVAESYEALGD 131 (289)
T ss_dssp HHHHHHHTCEEEEEECTTCTTSCHHHHHHHHHH-HHHHCSEEEEEECCSSHHHHHHHTTC
T ss_pred HHHHHhcCCeEEEEECCCCCccCHHHHHHHHHH-HHhcCCeeEEEecChHHHHHHHhcCC
Confidence 34445667899998 46788888887 777899999999999 344445553
No 239
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=33.67 E-value=63 Score=25.48 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=12.3
Q ss_pred CccEEEEcchhHhhh
Q 028826 76 NLVILVLDEADRLLD 90 (203)
Q Consensus 76 ~v~~lViDEad~l~~ 90 (203)
.-.+|+|||+|.+..
T Consensus 143 ~~~vl~iDEid~l~~ 157 (355)
T 2qp9_X 143 KPSIIFIDQVDALTG 157 (355)
T ss_dssp SSEEEEEECGGGGTC
T ss_pred CCeEEEEechHhhcc
Confidence 456999999999863
No 240
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=33.07 E-value=96 Score=19.83 Aligned_cols=12 Identities=0% Similarity=0.163 Sum_probs=9.5
Q ss_pred CCCeEEEeccHH
Q 028826 50 EGANLLIGTPGR 61 (203)
Q Consensus 50 ~~~~ilV~Tp~~ 61 (203)
...|++|+||.-
T Consensus 66 ~~~DlIi~t~~l 77 (110)
T 3czc_A 66 SNYDIVVASNHL 77 (110)
T ss_dssp GGCSEEEEETTT
T ss_pred CCCcEEEECCch
Confidence 468999999954
No 241
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=32.64 E-value=47 Score=24.67 Aligned_cols=26 Identities=27% Similarity=0.183 Sum_probs=17.3
Q ss_pred ccEEEEcchhHhhhhchHHHHHHHHHh
Q 028826 77 LVILVLDEADRLLDMGFQKQISYIISR 103 (203)
Q Consensus 77 v~~lViDEad~l~~~~~~~~~~~il~~ 103 (203)
-.++++||+|.+-.. ....+..++..
T Consensus 101 ~~~l~lDEi~~l~~~-~q~~Ll~~l~~ 126 (265)
T 2bjv_A 101 GGTLFLDELATAPMM-VQEKLLRVIEY 126 (265)
T ss_dssp TSEEEEESGGGSCHH-HHHHHHHHHHH
T ss_pred CcEEEEechHhcCHH-HHHHHHHHHHh
Confidence 469999999988543 34445555543
No 242
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=31.52 E-value=58 Score=21.09 Aligned_cols=49 Identities=14% Similarity=0.159 Sum_probs=25.4
Q ss_pred EEEEcCc-----HHHHHHHHHHHHHhhhcCCCceEEE-EEcCcchHHHHHHHHhCCCeEEEeccH
Q 028826 2 GMIISPT-----RELSAQIYHVAQPFISTLPDVKSML-LVGGVEVKADVKKIEEEGANLLIGTPG 60 (203)
Q Consensus 2 alil~Pt-----reLa~Qi~~~~~~l~~~~~~i~~~~-~~~g~~~~~~~~~l~~~~~~ilV~Tp~ 60 (203)
+|++|++ .-|+.++.+.+.+. ++.+.. ..+-.+.... ...+|++|+||.
T Consensus 24 IlvvC~sG~gTS~ll~~kl~~~~~~~-----gi~~~V~~~~~~~~~~~-----~~~~DlIist~~ 78 (113)
T 1tvm_A 24 IIVACGGAVATSTMAAEEIKELCQSH-----NIPVELIQCRVNEIETY-----MDGVHLICTTAR 78 (113)
T ss_dssp EEEESCSCSSHHHHHHHHHHHHHHHT-----TCCEEEEEECTTTTTTS-----TTSCSEEEESSC
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHHc-----CCeEEEEEecHHHHhhc-----cCCCCEEEECCc
Confidence 4667765 22455565555554 444322 2222222211 146899999994
No 243
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=30.12 E-value=60 Score=25.56 Aligned_cols=15 Identities=33% Similarity=0.618 Sum_probs=12.3
Q ss_pred CccEEEEcchhHhhh
Q 028826 76 NLVILVLDEADRLLD 90 (203)
Q Consensus 76 ~v~~lViDEad~l~~ 90 (203)
.-.+++|||+|.|..
T Consensus 176 ~~~vl~iDEid~l~~ 190 (357)
T 3d8b_A 176 QPAVIFIDEIDSLLS 190 (357)
T ss_dssp CSEEEEEETHHHHTB
T ss_pred CCeEEEEeCchhhhc
Confidence 357999999999864
No 244
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=29.66 E-value=15 Score=30.85 Aligned_cols=39 Identities=21% Similarity=0.196 Sum_probs=30.6
Q ss_pred cEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeee
Q 028826 78 VILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (203)
Q Consensus 78 ~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 116 (203)
+++|+||.+.=+|......+..++..+....|+++.|--
T Consensus 419 ~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~ 457 (517)
T 4ad8_A 419 PSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHL 457 (517)
T ss_dssp SEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCC
T ss_pred CEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 899999999888888778888777777556677766553
No 245
>3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A {Bacillus subtilis}
Probab=29.57 E-value=1.3e+02 Score=22.09 Aligned_cols=55 Identities=7% Similarity=0.137 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHh
Q 028826 9 RELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER 68 (203)
Q Consensus 9 reLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~ 68 (203)
-+++.++++.+++. +++...+..+.....+.......|+|++=..|.-+.+++++
T Consensus 142 ~~~v~~i~~~~~~~-----~~~t~ilaAS~R~~~~v~~~a~~G~d~~Tip~~vl~~l~~h 196 (212)
T 3r8r_A 142 LDLISEVKQIFDIH-----GLDTQIIAASIRHPQHVTEAALRGAHIGTMPLKVIHALTKH 196 (212)
T ss_dssp HHHHHHHHHHHHHH-----TCCCEEEEBSCCSHHHHHHHHHTTCSEEEECHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHc-----CCCCEEEEecCCCHHHHHHHHHcCCCEEEcCHHHHHHHHcC
Confidence 46777777777776 45555555565556666654457999988888777777654
No 246
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=28.69 E-value=74 Score=24.66 Aligned_cols=14 Identities=36% Similarity=0.517 Sum_probs=11.8
Q ss_pred CccEEEEcchhHhh
Q 028826 76 NLVILVLDEADRLL 89 (203)
Q Consensus 76 ~v~~lViDEad~l~ 89 (203)
.-.+++|||+|.+.
T Consensus 105 ~~~vl~iDEid~l~ 118 (322)
T 1xwi_A 105 KPSIIFIDEIDSLC 118 (322)
T ss_dssp SSEEEEEETTTGGG
T ss_pred CCcEEEeecHHHhc
Confidence 45699999999985
No 247
>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}
Probab=28.20 E-value=1.1e+02 Score=23.64 Aligned_cols=53 Identities=21% Similarity=0.378 Sum_probs=31.3
Q ss_pred CcHHHHHHHHHHHHHhhhcCCCceEEEEEcC---cchH-HHHHHHHhCCCeEEEeccHHH
Q 028826 7 PTRELSAQIYHVAQPFISTLPDVKSMLLVGG---VEVK-ADVKKIEEEGANLLIGTPGRL 62 (203)
Q Consensus 7 PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g---~~~~-~~~~~l~~~~~~ilV~Tp~~l 62 (203)
||+.|+. ++-..+.++ .+.|++++. .|+ .... .-...+..-+.+|.+++|..+
T Consensus 127 PtQaLaD-l~Ti~e~~g-~l~gl~va~-vGDl~~~rva~Sl~~~~~~~g~~v~~~~P~~~ 183 (291)
T 3d6n_B 127 PSQGLID-FFTIKEHFG-EVKDLRVLY-VGDIKHSRVFRSGAPLLNMFGAKIGVCGPKTL 183 (291)
T ss_dssp HHHHHHH-HHHHHHHHS-CCTTCEEEE-ESCCTTCHHHHHHHHHHHHTTCEEEEESCGGG
T ss_pred cHHHHHH-HHHHHHHhC-CcCCcEEEE-ECCCCCCchHHHHHHHHHHCCCEEEEECCchh
Confidence 7888874 333344443 444788655 555 2222 222233346899999999876
No 248
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=27.57 E-value=39 Score=24.54 Aligned_cols=45 Identities=13% Similarity=0.096 Sum_probs=29.5
Q ss_pred CCCccEEEEcchhHhhh-----hchHHHHHHHHHhCCCCCcEEEEeeecC
Q 028826 74 FRNLVILVLDEADRLLD-----MGFQKQISYIISRLPKLRRTGLFSATQT 118 (203)
Q Consensus 74 l~~v~~lViDEad~l~~-----~~~~~~~~~il~~~~~~~q~i~~SAT~~ 118 (203)
..+.+++++||.-.+++ ......+..++..+...--++++++-..
T Consensus 133 ~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~ 182 (251)
T 2ehv_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAP 182 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_pred hhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 35688999999988876 4455557777776643334455544433
No 249
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=27.55 E-value=93 Score=24.70 Aligned_cols=13 Identities=38% Similarity=0.652 Sum_probs=11.2
Q ss_pred ccEEEEcchhHhh
Q 028826 77 LVILVLDEADRLL 89 (203)
Q Consensus 77 v~~lViDEad~l~ 89 (203)
-.+|+|||+|.|+
T Consensus 208 ~~il~iDEid~l~ 220 (389)
T 3vfd_A 208 PSIIFIDQVDSLL 220 (389)
T ss_dssp SEEEEEETGGGGC
T ss_pred CeEEEEECchhhc
Confidence 3699999999985
No 250
>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET: AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A 1yh1_A* 1zq8_A* 3kzc_A* 3kzk_A* 3kzm_A* 3kzn_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 2g6a_A* 3l05_A* 2g65_A* 3l02_A* 3m4n_A* 2g6c_A* 3l06_A* 2g68_A* ...
Probab=27.15 E-value=1.2e+02 Score=24.29 Aligned_cols=54 Identities=15% Similarity=0.180 Sum_probs=31.2
Q ss_pred cCcHHHHHHHHHHHHHhhhc-CCCceE-EEEEcC----cc--hHHHHHHHHhCCCeEEEeccH
Q 028826 6 SPTRELSAQIYHVAQPFIST-LPDVKS-MLLVGG----VE--VKADVKKIEEEGANLLIGTPG 60 (203)
Q Consensus 6 ~PtreLa~Qi~~~~~~l~~~-~~~i~~-~~~~~g----~~--~~~~~~~l~~~~~~ilV~Tp~ 60 (203)
-||+.|+. ++-..+.++.. +.++++ +.++|+ .. ...-...+..-+.++.+++|.
T Consensus 168 HPtQaLaD-l~TI~E~~g~~~l~glkvvva~vGDl~~~~nrva~Sl~~~~~~~G~~v~~~~P~ 229 (359)
T 1zq6_A 168 HPCQELAH-ALALQEHFGTPDLRGKKYVLTWTYHPKPLNTAVANSALTIATRMGMDVTLLCPT 229 (359)
T ss_dssp CHHHHHHH-HHHHHHHHTSSCCTTCEEEEEECCCSSCCCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CcHHHHHH-HHHHHHHhCCCcccCCeeEEEEEecccccccchHHHHHHHHHHcCCEEEEEcCc
Confidence 38888874 33444444431 447884 455666 21 222333333458999999998
No 251
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=27.13 E-value=47 Score=21.40 Aligned_cols=72 Identities=15% Similarity=0.208 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhhcCC---CceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEEEcchh
Q 028826 13 AQIYHVAQPFISTLP---DVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEAD 86 (203)
Q Consensus 13 ~Qi~~~~~~l~~~~~---~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lViDEad 86 (203)
..+.+.+..+++... +-++.-+..+...+...+.+.+..+++.+.+|+.+.+.++. +.+-.-+ .+.++-.||
T Consensus 25 ~~l~ryiia~GG~v~~~~~~~vTHvIt~~~~d~~~~~a~~~~p~~~~V~P~WI~~Ci~~-~klvp~~-~y~~~~~~~ 99 (104)
T 3pc6_A 25 RRLIRYVTAFNGELEDYMNERVQFVITAQEWDPNFEEALMENPSLAFVRPRWIYSCNEK-QKLLPHQ-LYGVVPQAH 99 (104)
T ss_dssp HHHHHHHHHTTCEECSSCCTTCCEEEESSCCCHHHHHHHTTCTTCEEECHHHHHHHHHH-TSCCCGG-GGBCCCCGG
T ss_pred HHHHHHHHHcCCEEEcccCCCceEEEeCCCCChhHHHHhhhCCCCeEEccHHHHHHHhc-CccCCcc-cceecchhh
Confidence 345566666654221 22333333333333344455567899999999999999987 4433222 344444444
No 252
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=27.12 E-value=42 Score=24.96 Aligned_cols=54 Identities=15% Similarity=0.115 Sum_probs=0.0
Q ss_pred EEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEe
Q 028826 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIG 57 (203)
Q Consensus 3 lil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~ 57 (203)
++++|..+|.....+.+.++.... .+.+..-.-......-...+..+++||+|+
T Consensus 16 i~i~~~~~L~~~~~~i~~e~~~~~-~I~vi~~~le~av~~a~~~~~~~~~dVIIS 69 (225)
T 2pju_A 16 IWTVSVTRLFELFRDISLEFDHLA-NITPIQLGFEKAVTYIRKKLANERCDAIIA 69 (225)
T ss_dssp EEEECCHHHHHHHHHHHTTTTTTC-EEEEECCCHHHHHHHHHHHTTTSCCSEEEE
T ss_pred EEEEchHHHHHHHHHHHHhhCCCc-eEEEecCcHHHHHHHHHHHHhcCCCeEEEe
No 253
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Probab=26.67 E-value=1.3e+02 Score=23.33 Aligned_cols=54 Identities=19% Similarity=0.194 Sum_probs=31.6
Q ss_pred CcHHHHHHHHHHHHHhhhcCCCceEEEEEcCc--chHH-HHHHHHhC-CCeEEEeccHHH
Q 028826 7 PTRELSAQIYHVAQPFISTLPDVKSMLLVGGV--EVKA-DVKKIEEE-GANLLIGTPGRL 62 (203)
Q Consensus 7 PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~--~~~~-~~~~l~~~-~~~ilV~Tp~~l 62 (203)
||+.|+. ++...+.++ .+.|++++.+-.+. .... -...+..- +.+|.+++|..+
T Consensus 130 PtQ~LaD-l~Ti~e~~g-~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~ 187 (299)
T 1pg5_A 130 PTQAVID-IYTINKHFN-TIDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLL 187 (299)
T ss_dssp HHHHHHH-HHHHHHHHS-CSTTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGG
T ss_pred cHHHHHH-HHHHHHHhC-CcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCchh
Confidence 7888873 334444443 44478876655442 2222 22223334 899999999887
No 254
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=26.57 E-value=63 Score=28.33 Aligned_cols=96 Identities=16% Similarity=0.214 Sum_probs=48.5
Q ss_pred HHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHH-hCCCeEEEeccHH-----HHHHHHhC-CCc-------cCCCccEE
Q 028826 15 IYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIE-EEGANLLIGTPGR-----LYDIMERM-DVL-------DFRNLVIL 80 (203)
Q Consensus 15 i~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~-~~~~~ilV~Tp~~-----l~~~~~~~-~~~-------~l~~v~~l 80 (203)
..+.+..+.....++.+..-..|..+..-.-.+. .-...++|+.|.. |.++.... .-+ .+.+.+++
T Consensus 180 Q~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~~~~~vtAP~~~a~~~l~~~~~~~i~~~~Pd~~~~~~~~~dll 259 (671)
T 2zpa_A 180 QQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIAGRAIVTAPAKASTDVLAQFAGEKFRFIAPDALLASDEQADWL 259 (671)
T ss_dssp HHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSSSCEEEECSSCCSCHHHHHHHGGGCCBCCHHHHHHSCCCCSEE
T ss_pred HHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHHhCcEEECCCHHHHHHHHHHhhCCeEEeCchhhhhCcccCCEE
Confidence 3344555544332343333333443332222221 1234578888754 34433220 111 23458999
Q ss_pred EEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecC
Q 028826 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (203)
Q Consensus 81 ViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~ 118 (203)
|||||=.+ -.+.+..++... ..++||.|..
T Consensus 260 iVDEAAaI----p~pll~~ll~~~----~~v~~~tTv~ 289 (671)
T 2zpa_A 260 VVDEAAAI----PAPLLHQLVSRF----PRTLLTTTVQ 289 (671)
T ss_dssp EEETGGGS----CHHHHHHHHTTS----SEEEEEEEBS
T ss_pred EEEchhcC----CHHHHHHHHhhC----CeEEEEecCC
Confidence 99999765 244556666533 3578888864
No 255
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=26.56 E-value=1.1e+02 Score=22.38 Aligned_cols=14 Identities=29% Similarity=0.385 Sum_probs=11.5
Q ss_pred ccEEEEcchhHhhh
Q 028826 77 LVILVLDEADRLLD 90 (203)
Q Consensus 77 v~~lViDEad~l~~ 90 (203)
-.++++||+|.+..
T Consensus 105 ~~il~iDeid~l~~ 118 (257)
T 1lv7_A 105 PCIIFIDEIDAVGR 118 (257)
T ss_dssp SEEEEETTHHHHTC
T ss_pred Ceeehhhhhhhhcc
Confidence 35899999999864
No 256
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=25.77 E-value=1.3e+02 Score=23.74 Aligned_cols=53 Identities=25% Similarity=0.409 Sum_probs=30.9
Q ss_pred CcHHHHHHHHHHHHHhhhcCCCceEEEEEcCc-c-hH-HHHHHHHhCCCeEEEeccHHH
Q 028826 7 PTRELSAQIYHVAQPFISTLPDVKSMLLVGGV-E-VK-ADVKKIEEEGANLLIGTPGRL 62 (203)
Q Consensus 7 PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~-~-~~-~~~~~l~~~~~~ilV~Tp~~l 62 (203)
||+.|+. ++-..+.++ .+.|++++. +|+. + .. .-...+..-+.+|.+++|..+
T Consensus 148 PtQaLaD-l~Ti~e~~g-~l~gl~va~-vGD~~~rva~Sl~~~~~~~G~~v~~~~P~~~ 203 (325)
T 1vlv_A 148 PTQALAD-LMTIEENFG-RLKGVKVVF-MGDTRNNVATSLMIACAKMGMNFVACGPEEL 203 (325)
T ss_dssp HHHHHHH-HHHHHHHHS-CSTTCEEEE-ESCTTSHHHHHHHHHHHHTTCEEEEESCGGG
T ss_pred cHHHHHH-HHHHHHHhC-CcCCcEEEE-ECCCCcCcHHHHHHHHHHCCCEEEEECCccc
Confidence 7888873 334444443 444788665 5553 2 21 222233346899999999876
No 257
>1kae_A HDH, histidinol dehydrogenase; L-histidinol dehydrogenase, homodimer, rossman fold, 4 domai L-histidine biosynthesis, NAD cofactor; HET: HSO NAD; 1.70A {Escherichia coli} SCOP: c.82.1.2 PDB: 1k75_A* 1kah_A* 1kar_A
Probab=25.48 E-value=30 Score=28.56 Aligned_cols=27 Identities=11% Similarity=0.439 Sum_probs=23.3
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhhcCC
Q 028826 1 MGMIISPTRELSAQIYHVAQPFISTLP 27 (203)
Q Consensus 1 ~alil~PtreLa~Qi~~~~~~l~~~~~ 27 (203)
+++.|+++.+|+.++..++.+....+|
T Consensus 267 ~aiLvT~s~~la~~V~~ev~~ql~~lp 293 (434)
T 1kae_A 267 QVILLTPAADMARRVAEAVERQLAELP 293 (434)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHTTCT
T ss_pred cEEEEECCHHHHHHHHHHHHHHHHhCC
Confidence 378899999999999999999877664
No 258
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=25.11 E-value=98 Score=23.16 Aligned_cols=37 Identities=5% Similarity=0.031 Sum_probs=23.2
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeee
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 116 (203)
.+.+++++||+..+. + ..++.+++... ...+++++=.
T Consensus 89 ~~~dvViIDEaQF~~--~-v~el~~~l~~~--gi~VI~~GL~ 125 (234)
T 2orv_A 89 LGVAVIGIDEGQFFP--D-IVEFCEAMANA--GKTVIVAALD 125 (234)
T ss_dssp TTCSEEEESSGGGCT--T-HHHHHHHHHHT--TCEEEEECCS
T ss_pred ccCCEEEEEchhhhh--h-HHHHHHHHHhC--CCEEEEEecc
Confidence 457899999998764 3 55555555553 4455554433
No 259
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=24.99 E-value=88 Score=24.31 Aligned_cols=13 Identities=31% Similarity=0.258 Sum_probs=10.9
Q ss_pred cEEEEcchhHhhh
Q 028826 78 VILVLDEADRLLD 90 (203)
Q Consensus 78 ~~lViDEad~l~~ 90 (203)
.+++|||+|.|..
T Consensus 191 ~vl~IDEi~~l~~ 203 (368)
T 3uk6_A 191 GVLFIDEVHMLDI 203 (368)
T ss_dssp CEEEEESGGGSBH
T ss_pred ceEEEhhccccCh
Confidence 4999999998843
No 260
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=24.98 E-value=69 Score=21.84 Aligned_cols=42 Identities=26% Similarity=0.378 Sum_probs=30.5
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCC-CCcEEEEeee
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPK-LRRTGLFSAT 116 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~-~~q~i~~SAT 116 (203)
.+.+++++||.-.-+|......+..++..+.. ..++++.|-.
T Consensus 80 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~ 122 (148)
T 1f2t_B 80 GEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHD 122 (148)
T ss_dssp SSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESC
T ss_pred CCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEECh
Confidence 45789999998777787778888888888743 3455555443
No 261
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=24.91 E-value=1.3e+02 Score=21.86 Aligned_cols=44 Identities=16% Similarity=0.196 Sum_probs=24.5
Q ss_pred ccEEEEcchhHhhhhc----------hHHHHHHHHHhC---CCCCcEEEEeeecChh
Q 028826 77 LVILVLDEADRLLDMG----------FQKQISYIISRL---PKLRRTGLFSATQTEA 120 (203)
Q Consensus 77 v~~lViDEad~l~~~~----------~~~~~~~il~~~---~~~~q~i~~SAT~~~~ 120 (203)
..++++||+|.+.... ....+..++..+ ...+..++..+|-.++
T Consensus 109 ~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~ 165 (254)
T 1ixz_A 109 PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD 165 (254)
T ss_dssp SEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGG
T ss_pred CeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCch
Confidence 4689999999885321 122234444443 2344566666666554
No 262
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=24.65 E-value=1.4e+02 Score=23.28 Aligned_cols=53 Identities=21% Similarity=0.359 Sum_probs=31.0
Q ss_pred CcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcc----hHHHHHHHHhC-CCeEEEeccHHH
Q 028826 7 PTRELSAQIYHVAQPFISTLPDVKSMLLVGGVE----VKADVKKIEEE-GANLLIGTPGRL 62 (203)
Q Consensus 7 PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~----~~~~~~~l~~~-~~~ilV~Tp~~l 62 (203)
||+.|+. ++-..+.++ .+.|++++. +|+.. ...-...+..- +.++.+++|..+
T Consensus 132 PtQ~LaD-l~Ti~e~~g-~l~glkva~-vGD~~~~rva~Sl~~~~~~~~G~~v~~~~P~~~ 189 (306)
T 4ekn_B 132 PTQTLLD-LYTIMREIG-RIDGIKIAF-VGDLKYGRTVHSLVYALSLFENVEMYFVSPKEL 189 (306)
T ss_dssp HHHHHHH-HHHHHHHHS-CSTTCEEEE-ESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGG
T ss_pred cHHHHHH-HHHHHHHhC-CcCCCEEEE-EcCCCCCcHHHHHHHHHHhcCCCEEEEECCccc
Confidence 7888874 333344443 344788765 45532 22222233344 899999999876
No 263
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=24.64 E-value=1.6e+02 Score=19.68 Aligned_cols=47 Identities=15% Similarity=0.083 Sum_probs=27.8
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeE
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANL 54 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~i 54 (203)
++|.+|. +.+.++.+++.+. +++...+..|....+-.+...+.+..+
T Consensus 81 vvi~vp~-~~~~~vv~~~~~~-----gi~~i~~~~g~~~~~l~~~a~~~Gi~v 127 (144)
T 2d59_A 81 VDLFVKP-KLTMEYVEQAIKK-----GAKVVWFQYNTYNREASKKADEAGLII 127 (144)
T ss_dssp EEECSCH-HHHHHHHHHHHHH-----TCSEEEECTTCCCHHHHHHHHHTTCEE
T ss_pred EEEEeCH-HHHHHHHHHHHHc-----CCCEEEECCCchHHHHHHHHHHcCCEE
Confidence 5667776 5556665555554 566666666666555555555556663
No 264
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=24.48 E-value=1.4e+02 Score=23.37 Aligned_cols=53 Identities=17% Similarity=0.333 Sum_probs=30.8
Q ss_pred CcHHHHHHHHHHHHHhhhcCCCceEEEEEcCc---chH-HHHHHHHhC-CCeEEEeccHHH
Q 028826 7 PTRELSAQIYHVAQPFISTLPDVKSMLLVGGV---EVK-ADVKKIEEE-GANLLIGTPGRL 62 (203)
Q Consensus 7 PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~---~~~-~~~~~l~~~-~~~ilV~Tp~~l 62 (203)
||+.|+. ++-..+.++ .+.|++++. +|+. ... .-...+..- +.+|.+++|..+
T Consensus 135 PtQaLaD-l~Ti~e~~g-~l~gl~va~-vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~ 192 (310)
T 3csu_A 135 PTQTLLD-LFTIQETQG-RLDNLHVAM-VGDLKYGRTVHSLTQALAKFDGNRFYFIAPDAL 192 (310)
T ss_dssp HHHHHHH-HHHHHHHHS-CSSSCEEEE-ESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGG
T ss_pred chHHHHH-HHHHHHHhC-CcCCcEEEE-ECCCCCCchHHHHHHHHHhCCCCEEEEECCccc
Confidence 7888873 333444443 444788655 5553 222 222233345 899999999876
No 265
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=24.42 E-value=48 Score=24.01 Aligned_cols=85 Identities=12% Similarity=0.151 Sum_probs=47.4
Q ss_pred CceEEEEEcCcchHHH-HH----HHHhCCCeEEEeccHHHHHHHHh----------------CCCccCCCccEEEEcchh
Q 028826 28 DVKSMLLVGGVEVKAD-VK----KIEEEGANLLIGTPGRLYDIMER----------------MDVLDFRNLVILVLDEAD 86 (203)
Q Consensus 28 ~i~~~~~~~g~~~~~~-~~----~l~~~~~~ilV~Tp~~l~~~~~~----------------~~~~~l~~v~~lViDEad 86 (203)
.+.++...||.....+ .. ...+.|-+|.|-+|..-....-. .....|..=+++|||||-
T Consensus 52 ~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~~s~~~l~~~~~l~~~t~t~~~ll~~~~~~tp~s~lIVD~Ae 131 (189)
T 2l8b_A 52 SLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMNMKQDERLSGELITGRRQLLEGMAFTPGSTVIVDQGE 131 (189)
T ss_dssp CEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTTHHHHHHSCTTTCSSCSSSTTTTTTTSCCCCCCCEEEEEESS
T ss_pred ceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCchHHHHHHHhhcCcCcceeehhhhhcCCCCCCCCCEEEEechh
Confidence 3444444555543333 11 22346789999999887654321 011123455699999999
Q ss_pred HhhhhchHHHHHHHHHhC-CCCCcEEEEeee
Q 028826 87 RLLDMGFQKQISYIISRL-PKLRRTGLFSAT 116 (203)
Q Consensus 87 ~l~~~~~~~~~~~il~~~-~~~~q~i~~SAT 116 (203)
+|-.. ++..++..- ..+.|+|++..+
T Consensus 132 kLS~k----E~~~Lld~A~~~naqvvll~~~ 158 (189)
T 2l8b_A 132 KLSLK----ETLTLLDGAARHNVQVLITDSG 158 (189)
T ss_dssp SHHHH----HHHHHHHHHHHTTCCEEEEESS
T ss_pred hcCHH----HHHHHHHHHHhcCCEEEEeCCc
Confidence 88433 333333332 356888887655
No 266
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=24.40 E-value=62 Score=23.87 Aligned_cols=29 Identities=14% Similarity=0.142 Sum_probs=17.7
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHh
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISR 103 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~ 103 (203)
.+.+++++||||.-........++.++.-
T Consensus 102 ~~~kIiiLDEad~~~~~~~d~~lrn~ldG 130 (212)
T 1tue_A 102 TDTKVAMLDDATTTCWTYFDTYMRNALDG 130 (212)
T ss_dssp TTCSSEEEEEECHHHHHHHHHHCHHHHHT
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHHhCC
Confidence 46789999999854322223445555544
No 267
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=24.26 E-value=1.8e+02 Score=22.66 Aligned_cols=54 Identities=19% Similarity=0.401 Sum_probs=31.4
Q ss_pred CcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcc----hHHHHHHHHhCCCeEEEeccHHHH
Q 028826 7 PTRELSAQIYHVAQPFISTLPDVKSMLLVGGVE----VKADVKKIEEEGANLLIGTPGRLY 63 (203)
Q Consensus 7 PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~----~~~~~~~l~~~~~~ilV~Tp~~l~ 63 (203)
||+.|+. ++-..+.++ .+.|++++. +|+.. ...-...+..-+.++.+++|..+.
T Consensus 128 PtQaLaD-l~Ti~e~~g-~l~glkva~-vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~ 185 (304)
T 3r7f_A 128 PTQSLLD-LMTIYEEFN-TFKGLTVSI-HGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQ 185 (304)
T ss_dssp HHHHHHH-HHHHHHHHS-CCTTCEEEE-ESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGS
T ss_pred cHHHHHH-HHHHHHHhC-CCCCCEEEE-EcCCCCcchHHHHHHHHHHcCCEEEEECCCccC
Confidence 7888874 333334443 344788765 55432 222223333458999999998763
No 268
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=24.22 E-value=1.4e+02 Score=24.31 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=24.2
Q ss_pred CccEEEEcchhHhhhh-------chHHHHHHHHHhCC----CCCcEEEEeeec
Q 028826 76 NLVILVLDEADRLLDM-------GFQKQISYIISRLP----KLRRTGLFSATQ 117 (203)
Q Consensus 76 ~v~~lViDEad~l~~~-------~~~~~~~~il~~~~----~~~q~i~~SAT~ 117 (203)
.-.+|+|||+|.+... ........++..+. ....++++.||-
T Consensus 227 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn 279 (444)
T 2zan_A 227 KPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATN 279 (444)
T ss_dssp CSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEES
T ss_pred CCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCC
Confidence 3579999999998531 12334455665552 233455555553
No 269
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=24.15 E-value=1.2e+02 Score=21.76 Aligned_cols=40 Identities=15% Similarity=0.291 Sum_probs=30.2
Q ss_pred CceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHh
Q 028826 28 DVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER 68 (203)
Q Consensus 28 ~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~ 68 (203)
+++...+.+..+.....+.+.+.+++++|| +....++.++
T Consensus 119 ~i~~~~~~~~~e~~~~i~~l~~~G~~vvVG-~~~~~~~A~~ 158 (196)
T 2q5c_A 119 KIKEFLFSSEDEITTLISKVKTENIKIVVS-GKTVTDEAIK 158 (196)
T ss_dssp EEEEEEECSGGGHHHHHHHHHHTTCCEEEE-CHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCeEEEC-CHHHHHHHHH
Confidence 466666666677778888888899999999 5566667766
No 270
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=24.04 E-value=1e+02 Score=25.95 Aligned_cols=70 Identities=13% Similarity=0.211 Sum_probs=37.1
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEecc-HHHHHHHHhCCCccCC-----
Q 028826 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTP-GRLYDIMERMDVLDFR----- 75 (203)
Q Consensus 2 alil~PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp-~~l~~~~~~~~~~~l~----- 75 (203)
+||+.|+.....++++ .. +.++..-..+.+..+..+.....+.-|++||- +.++ .++|+.
T Consensus 396 ~lvlF~Sy~~l~~v~~-------~~-~~~v~~q~~~~~~~~~~~~~~~~~~~vl~~v~gg~~~------EGiD~~d~~g~ 461 (551)
T 3crv_A 396 VLVVFPSYEIMDRVMS-------RI-SLPKYVESEDSSVEDLYSAISANNKVLIGSVGKGKLA------EGIELRNNDRS 461 (551)
T ss_dssp EEEEESCHHHHHHHHT-------TC-CSSEEECCSSCCHHHHHHHTTSSSSCEEEEESSCCSC------CSSCCEETTEE
T ss_pred EEEEecCHHHHHHHHH-------hc-CCcEEEcCCCCCHHHHHHHHHhcCCeEEEEEecceec------ccccccccCCc
Confidence 4677777777777664 11 33332222222333333333223346777764 4444 356666
Q ss_pred CccEEEEcch
Q 028826 76 NLVILVLDEA 85 (203)
Q Consensus 76 ~v~~lViDEa 85 (203)
.++.+|||-.
T Consensus 462 ~l~~viI~~l 471 (551)
T 3crv_A 462 LISDVVIVGI 471 (551)
T ss_dssp SEEEEEEESC
T ss_pred ceeEEEEEcC
Confidence 5788888754
No 271
>3gm8_A Glycoside hydrolase family 2, candidate beta-GLYC; structural genomics, glycosidase, PSI-2, protein initiative; 2.40A {Bacteroides vulgatus}
Probab=23.66 E-value=3.3e+02 Score=24.31 Aligned_cols=50 Identities=22% Similarity=0.285 Sum_probs=33.3
Q ss_pred cHHHHHHHHhCCCccCCCccEEEEcchhHh-------------hhhchHHHHHHHHHhCCCCCcEEEEeee
Q 028826 59 PGRLYDIMERMDVLDFRNLVILVLDEADRL-------------LDMGFQKQISYIISRLPKLRRTGLFSAT 116 (203)
Q Consensus 59 p~~l~~~~~~~~~~~l~~v~~lViDEad~l-------------~~~~~~~~~~~il~~~~~~~q~i~~SAT 116 (203)
+.+++++..+ +.++|+||+... +..-....++.++.+..+.+-++++|.-
T Consensus 332 ~~~~~dlcDe--------~GilV~~E~~~~w~~~~~~~~~~~~~~~~~~~~~~~mv~r~rNHPSIi~Ws~g 394 (801)
T 3gm8_A 332 SPAFYNLCDT--------MGIMVLNEGLDGWNQPKAADDYGNYFDEWWQKDMTDFIKRDRNHPSIIMWSIG 394 (801)
T ss_dssp CHHHHHHHHH--------HTCEEEEECCSSSSSCSSTTSGGGTHHHHHHHHHHHHHHHHTTCTTEEEEEEE
T ss_pred cHHHHHHHHH--------CCCEEEECCchhhcCCCCcccccHHHHHHHHHHHHHHHHhcCCCCeEEEEECc
Confidence 4667777766 668999997211 0111235677888888888888888763
No 272
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=23.42 E-value=94 Score=24.62 Aligned_cols=54 Identities=13% Similarity=0.230 Sum_probs=30.6
Q ss_pred CcHHHHHHHHHHHHH-hhhcCCCceEEEEEcCc-c-hHHH-HHHHHhCCCeEEEeccHHH
Q 028826 7 PTRELSAQIYHVAQP-FISTLPDVKSMLLVGGV-E-VKAD-VKKIEEEGANLLIGTPGRL 62 (203)
Q Consensus 7 PtreLa~Qi~~~~~~-l~~~~~~i~~~~~~~g~-~-~~~~-~~~l~~~~~~ilV~Tp~~l 62 (203)
||+.|+. ++-..+. +++.+.|++++. +|+. + .... ...+..-+.+|.+++|..+
T Consensus 134 PtQ~LaD-l~Ti~e~~~g~~l~gl~ia~-vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~ 191 (333)
T 1duv_G 134 PTQLLAD-LLTMQEHLPGKAFNEMTLVY-AGDARNNMGNSMLEAAALTGLDLRLVAPQAC 191 (333)
T ss_dssp HHHHHHH-HHHHHHHSTTCCGGGCEEEE-ESCTTSHHHHHHHHHHHHHCCEEEEECCGGG
T ss_pred chHHHHH-HHHHHHHhcCCCCCCcEEEE-ECCCccchHHHHHHHHHHcCCEEEEECCccc
Confidence 7888874 3344444 441344677655 5543 2 2221 2222235899999999876
No 273
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=23.35 E-value=1.1e+02 Score=22.91 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=12.8
Q ss_pred CccEEEEcchhHhhhh
Q 028826 76 NLVILVLDEADRLLDM 91 (203)
Q Consensus 76 ~v~~lViDEad~l~~~ 91 (203)
.-.++++||+|.+...
T Consensus 116 ~~~vl~iDEi~~l~~~ 131 (310)
T 1ofh_A 116 QNGIVFIDEIDKICKK 131 (310)
T ss_dssp HHCEEEEECGGGGSCC
T ss_pred CCCEEEEEChhhcCcc
Confidence 3579999999998643
No 274
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=23.10 E-value=2.5e+02 Score=21.33 Aligned_cols=49 Identities=12% Similarity=0.230 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhhcCCCceEEEEEcCcc--hHHHHHHHHhCCCeEEEeccHHH
Q 028826 13 AQIYHVAQPFISTLPDVKSMLLVGGVE--VKADVKKIEEEGANLLIGTPGRL 62 (203)
Q Consensus 13 ~Qi~~~~~~l~~~~~~i~~~~~~~g~~--~~~~~~~l~~~~~~ilV~Tp~~l 62 (203)
.++.+-+.+..... ++.+..+.+... ..+..+.+...++|.||.++...
T Consensus 23 ~~~~~Gi~~~~~~~-g~~~~~~~~~~~~~~~~~l~~l~~~~~dgIi~~~~~~ 73 (318)
T 2fqx_A 23 QQVWEGISRFAQEN-NAKCKYVTASTDAEYVPSLSAFADENMGLVVACGSFL 73 (318)
T ss_dssp HHHHHHHHHHHHHT-TCEEEEEECCSGGGHHHHHHHHHHTTCSEEEEESTTT
T ss_pred HHHHHHHHHHHHHh-CCeEEEEeCCCHHHHHHHHHHHHHcCCCEEEECChhH
Confidence 34444555555554 677766554322 22334556667899999886443
No 275
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=22.95 E-value=1.2e+02 Score=23.61 Aligned_cols=53 Identities=13% Similarity=0.190 Sum_probs=30.7
Q ss_pred CcHHHHHHHHHHHHHhhhcCCCceEEEEEcCc-c-hH-HHHHHHHhCCCeEEEeccHHH
Q 028826 7 PTRELSAQIYHVAQPFISTLPDVKSMLLVGGV-E-VK-ADVKKIEEEGANLLIGTPGRL 62 (203)
Q Consensus 7 PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~-~-~~-~~~~~l~~~~~~ilV~Tp~~l 62 (203)
||+.|+. ++...+.++ .+.|++++. +|+. + .. .-...+..-+.+|.+++|..+
T Consensus 129 PtQaLaD-l~Ti~e~~g-~l~gl~va~-vGD~~~rva~Sl~~~~~~~g~~v~~~~P~~~ 184 (307)
T 2i6u_A 129 PCQVLAD-LQTIAERKG-ALRGLRLSY-FGDGANNMAHSLLLGGVTAGIHVTVAAPEGF 184 (307)
T ss_dssp HHHHHHH-HHHHHHHHS-CCTTCEEEE-ESCTTSHHHHHHHHHHHHTTCEEEEECCTTS
T ss_pred ccHHHHH-HHHHHHHhC-CcCCeEEEE-ECCCCcCcHHHHHHHHHHCCCEEEEECCccc
Confidence 7888873 334444443 444788655 5553 2 22 222233346899999999765
No 276
>3s1x_A Probable transaldolase; alpha-beta barrel, conformational selection, domain swapping transferase; HET: I22; 1.65A {Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A* 3s1w_A*
Probab=22.81 E-value=1.4e+02 Score=22.14 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=37.3
Q ss_pred cHHHHHHHHHHHHHhhhcCCCceEEEEEcCcchHHHHHHHHhCCCeEEEeccHHHHHHHHh
Q 028826 8 TRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER 68 (203)
Q Consensus 8 treLa~Qi~~~~~~l~~~~~~i~~~~~~~g~~~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~ 68 (203)
--+++.++++.+++. +.+...+..+.....+.......|+|++-..|.-+.+++++
T Consensus 143 G~~~v~~i~~~~~~~-----~~~T~IlaAS~Rn~~~v~~aa~~G~d~~Tip~~vl~~l~~h 198 (223)
T 3s1x_A 143 GMQIIDMIRTIFNNY-----IIKTQILVASIRNPIHVLRSAVIGADVVTVPFNVLKSLMKH 198 (223)
T ss_dssp THHHHHHHHHHHHHT-----TCCSEEEEBSCCSHHHHHHHHHHTCSEEEECHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHc-----CCCCEEEEEeCCCHHHHHHHHHcCCCEEEeCHHHHHHHHcC
Confidence 356777777777775 44445555555555666654346899988888887777654
No 277
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=22.64 E-value=1e+02 Score=26.44 Aligned_cols=60 Identities=15% Similarity=0.282 Sum_probs=31.0
Q ss_pred cEEEEcchhHhhhh---chHHHHHHHHHhCCCCCcEEEEeeecCh--hHHHHHHhcCCCCeEEEe
Q 028826 78 VILVLDEADRLLDM---GFQKQISYIISRLPKLRRTGLFSATQTE--AVEELSKAGLRNPVRIEV 137 (203)
Q Consensus 78 ~~lViDEad~l~~~---~~~~~~~~il~~~~~~~q~i~~SAT~~~--~v~~~~~~~l~~~~~i~~ 137 (203)
-++||||++.++.. .+...+.+|.+.-...--.+++++--|. .+...++..+.....+.+
T Consensus 345 ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv 409 (574)
T 2iut_A 345 IVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQV 409 (574)
T ss_dssp EEEEESCCTTHHHHTCHHHHHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECC
T ss_pred EEEEEeCHHHHhhhhhHHHHHHHHHHHHHHhhCCeEEEEEecCcccccccHHHHhhhccEEEEEc
Confidence 38999999988643 2445555665555433333344332222 233444445554444443
No 278
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=22.57 E-value=1e+02 Score=23.25 Aligned_cols=40 Identities=33% Similarity=0.481 Sum_probs=30.5
Q ss_pred CCCccEEEEcchhHhhhhchHHHHHHHHHhCCCC-CcEEEE
Q 028826 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKL-RRTGLF 113 (203)
Q Consensus 74 l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~-~q~i~~ 113 (203)
+.+-+++++||.-.-+|......+..++..+... ..++++
T Consensus 172 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tvii 212 (271)
T 2ixe_A 172 IRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLL 212 (271)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEE
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEE
Confidence 5678999999988888888888888888888542 334444
No 279
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=22.18 E-value=97 Score=24.55 Aligned_cols=54 Identities=19% Similarity=0.260 Sum_probs=30.8
Q ss_pred CcHHHHHHHHHHHHHhhhcCCCceEEEEEcCc-c-hH-HHHHHHHhCCCeEEEeccHHH
Q 028826 7 PTRELSAQIYHVAQPFISTLPDVKSMLLVGGV-E-VK-ADVKKIEEEGANLLIGTPGRL 62 (203)
Q Consensus 7 PtreLa~Qi~~~~~~l~~~~~~i~~~~~~~g~-~-~~-~~~~~l~~~~~~ilV~Tp~~l 62 (203)
||+.|+. ++-..+.++..+.|++++. +|+. + .. .-...+..-+.+|.+++|..+
T Consensus 135 PtQ~LaD-l~Ti~e~~g~~l~gl~va~-vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~ 191 (335)
T 1dxh_A 135 PTQMLAD-VLTMREHSDKPLHDISYAY-LGDARNNMGNSLLLIGAKLGMDVRIAAPKAL 191 (335)
T ss_dssp HHHHHHH-HHHHHHTCSSCGGGCEEEE-ESCCSSHHHHHHHHHHHHTTCEEEEECCGGG
T ss_pred cHHHHHH-HHHHHHHcCCCcCCeEEEE-ecCCccchHHHHHHHHHHcCCEEEEECCccc
Confidence 7888874 3344444441333677655 5553 2 22 222233346899999999876
No 280
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=22.10 E-value=1.2e+02 Score=22.19 Aligned_cols=36 Identities=11% Similarity=0.175 Sum_probs=20.4
Q ss_pred CccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEee
Q 028826 76 NLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (203)
Q Consensus 76 ~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SA 115 (203)
+.++++|||+..+ +....+.+..+.. ....+++++=
T Consensus 101 ~~dvViIDEaQF~-~~~~V~~l~~l~~---~~~~Vi~~Gl 136 (214)
T 2j9r_A 101 EMDVIAIDEVQFF-DGDIVEVVQVLAN---RGYRVIVAGL 136 (214)
T ss_dssp SCCEEEECCGGGS-CTTHHHHHHHHHH---TTCEEEEEEC
T ss_pred CCCEEEEECcccC-CHHHHHHHHHHhh---CCCEEEEEec
Confidence 4789999999764 4333344444332 3444555443
No 281
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=21.67 E-value=62 Score=24.92 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=16.2
Q ss_pred ccEEEEcchhHhhhhchHHHHHHHHH
Q 028826 77 LVILVLDEADRLLDMGFQKQISYIIS 102 (203)
Q Consensus 77 v~~lViDEad~l~~~~~~~~~~~il~ 102 (203)
-.++++||+|.+-.. ....+..++.
T Consensus 145 ~~vl~iDEi~~l~~~-~~~~Ll~~le 169 (350)
T 1g8p_A 145 RGYLYIDECNLLEDH-IVDLLLDVAQ 169 (350)
T ss_dssp TEEEEETTGGGSCHH-HHHHHHHHHH
T ss_pred CCEEEEeChhhCCHH-HHHHHHHHHh
Confidence 469999999987443 3344444444
No 282
>2bkx_A Glucosamine-6-phosphate deaminase; hydrolase, substrate inhibition, fructose-6-phosphate; HET: F6R; 1.4A {Bacillus subtilis} PDB: 2bkv_A*
Probab=21.41 E-value=2.4e+02 Score=20.51 Aligned_cols=36 Identities=14% Similarity=0.138 Sum_probs=25.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC-----------CCeEEEEeccCC
Q 028826 163 HLEYLECESDKKPSQLVDLLIKNK-----------SKKIIMYVQHGN 198 (203)
Q Consensus 163 ~~~~~~~~~~~k~~~l~~ll~~~~-----------~~~~lIF~ns~~ 198 (203)
.+.+..+.+.+|.+.+...++... .+.+.+|+....
T Consensus 191 ~~vi~va~G~~Ka~ai~~al~g~~~~~~Pas~l~~~~~~~~~~D~~A 237 (242)
T 2bkx_A 191 KRILLLISGKSKAEAVRKLLEGNISEDFPASALHLHSDVTVLIDREA 237 (242)
T ss_dssp SCEEEEECSGGGHHHHHHHHHTCCCTTSGGGGGGGCSSEEEEEETTT
T ss_pred CEEEEEEeChHHHHHHHHHHcCCCCCcccHHHhccCCCEEEEEchHH
Confidence 556666778899999999997531 246788876543
No 283
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=21.16 E-value=2.6e+02 Score=20.88 Aligned_cols=69 Identities=17% Similarity=0.268 Sum_probs=37.8
Q ss_pred HHHHHHHHhhhcCCCceEEEEEcCcc---hHHHHHHHHhCCCeEEEeccHHHHHHHHhCCCccCCCccEEEEcc
Q 028826 14 QIYHVAQPFISTLPDVKSMLLVGGVE---VKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDE 84 (203)
Q Consensus 14 Qi~~~~~~l~~~~~~i~~~~~~~g~~---~~~~~~~l~~~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lViDE 84 (203)
++.+-+.+..... ++.+....+..+ ..+..+.+...++|.||.++....+.+.. -.-...++.++++|.
T Consensus 24 ~~~~gi~~~~~~~-g~~~~~~~~~~~~~~~~~~l~~l~~~~vdgIi~~~~~~~~~~~~-~~~~~p~~p~v~id~ 95 (296)
T 2hqb_A 24 KAYEGLLNIHSNL-DVDVVLEEGVNSEQKAHRRIKELVDGGVNLIFGHGHAFAEYFST-IHNQYPDVHFVSFNG 95 (296)
T ss_dssp HHHHHHHHHHHHS-CCEEEEECCCCSHHHHHHHHHHHHHTTCCEEEECSTHHHHHHHT-TTTSCTTSEEEEESC
T ss_pred HHHHHHHHHHHHh-CCeEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEcCHhHHHHHHH-HHHHCCCCEEEEEec
Confidence 3444445454444 777765544332 22234455567899999987655444433 111123567888875
No 284
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=20.86 E-value=1.1e+02 Score=24.99 Aligned_cols=12 Identities=33% Similarity=0.357 Sum_probs=10.6
Q ss_pred cEEEEcchhHhh
Q 028826 78 VILVLDEADRLL 89 (203)
Q Consensus 78 ~~lViDEad~l~ 89 (203)
+.+++||||.|-
T Consensus 297 ~VliIDEa~~l~ 308 (456)
T 2c9o_A 297 GVLFVDEVHMLD 308 (456)
T ss_dssp CEEEEESGGGCB
T ss_pred eEEEEechhhcC
Confidence 599999999884
No 285
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=20.85 E-value=1.2e+02 Score=22.59 Aligned_cols=40 Identities=23% Similarity=0.157 Sum_probs=29.0
Q ss_pred CCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEe
Q 028826 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (203)
Q Consensus 75 ~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~S 114 (203)
.+-+++++||.-.-+|......+..++..+.....+++++
T Consensus 160 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~v 199 (250)
T 2d2e_A 160 LEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVI 199 (250)
T ss_dssp HCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEE
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 4567999999888888888888888888775433344443
No 286
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=20.20 E-value=2.5e+02 Score=20.22 Aligned_cols=84 Identities=15% Similarity=0.224 Sum_probs=46.5
Q ss_pred HHHHHHHHh-CCCeEEEeccHHHHHHHHhCCCccCCCccEEEEcchhHhhhhchHHHHHHHHHhCCCCCcEEEEeeecCh
Q 028826 41 KADVKKIEE-EGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (203)
Q Consensus 41 ~~~~~~l~~-~~~~ilV~Tp~~l~~~~~~~~~~~l~~v~~lViDEad~l~~~~~~~~~~~il~~~~~~~q~i~~SAT~~~ 119 (203)
..-...+.+ .+||-||+|-..+....++.+-.-.. +++++| +..+...++.+-..-|....+ +++.+|.
T Consensus 71 ~~ai~fL~~~~~pdGIIsTk~~~i~~Ak~~gL~tIq--R~FliD------S~al~~~~~~i~~~~PD~iEi--LPGi~p~ 140 (192)
T 3kts_A 71 DYAIDFLCTEICPDGIISTRGNAIMKAKQHKMLAIQ--RLFMID------SSAYNKGVALIQKVQPDCIEL--LPGIIPE 140 (192)
T ss_dssp HHHHHHHHHTTCCSEEEESCHHHHHHHHHTTCEEEE--EEECCS------HHHHHHHHHHHHHHCCSEEEE--ECTTCHH
T ss_pred HHHHHHHHhCCCCCEEEeCcHHHHHHHHHCCCeEEE--EEEEEE------cchHHHHHHHHhhcCCCEEEE--CCchhHH
Confidence 344445544 48999999999999999873322222 255555 223444555554444433333 3666664
Q ss_pred hHHHHHHhcCCCCeEE
Q 028826 120 AVEELSKAGLRNPVRI 135 (203)
Q Consensus 120 ~v~~~~~~~l~~~~~i 135 (203)
-+..+ ++...-|.+.
T Consensus 141 iI~~i-~~~~~~PiIa 155 (192)
T 3kts_A 141 QVQKM-TQKLHIPVIA 155 (192)
T ss_dssp HHHHH-HHHHCCCEEE
T ss_pred HHHHH-HHhcCCCEEE
Confidence 34444 4345556544
No 287
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=20.14 E-value=24 Score=29.10 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=12.0
Q ss_pred CCccEEEEcchhHhhh
Q 028826 75 RNLVILVLDEADRLLD 90 (203)
Q Consensus 75 ~~v~~lViDEad~l~~ 90 (203)
.+-.+++|||+|.+..
T Consensus 105 ~~~~iLfIDEI~~l~~ 120 (447)
T 3pvs_A 105 GRRTILFVDEVHRFNK 120 (447)
T ss_dssp TCCEEEEEETTTCC--
T ss_pred CCCcEEEEeChhhhCH
Confidence 4567999999999853
Done!