BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028827
(203 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GYL|A Chain A, Involvement Of Tyr24 And Trp108 In Substrate Binding And
Substrate Specificity Of Glycolate Oxidase
pdb|1GYL|B Chain B, Involvement Of Tyr24 And Trp108 In Substrate Binding And
Substrate Specificity Of Glycolate Oxidase
Length = 369
Score = 221 bits (563), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 108/170 (63%), Positives = 138/170 (81%)
Query: 34 EPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLS 93
E N+NE++ +A+ LPKM YDFYA GAED+ TL EN AF RI FRPRIL+DV+ ID++
Sbjct: 2 EITNVNEYEAIAKQKLPKMVYDFYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 61
Query: 94 TTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCN 153
TTIL +KIS PI+IAPTA+ K+A+PEGE ATARAA++ TIM LS ++SS+EEVA++
Sbjct: 62 TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNK 203
+RF+QLYV+K R++ A LV+RAER GFKA+ LT DTPRLGRREADIKN+
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNR 171
>pdb|1AL7|A Chain A, Three-Dimensional Structures Of Glycolate Oxidase With
Bound Active- Site Inhibitors
pdb|1AL8|A Chain A, Three-Dimensional Structure Of Glycolate Oxidase With
Bound Active- Site Inhibitors
Length = 359
Score = 220 bits (560), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 107/170 (62%), Positives = 138/170 (81%)
Query: 34 EPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLS 93
E N+NE++ +A+ LPKM YD+YA GAED+ TL EN AF RI FRPRIL+DV+ ID++
Sbjct: 2 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 61
Query: 94 TTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCN 153
TTIL +KIS PI+IAPTA+ K+A+PEGE ATARAA++ TIM LS ++SS+EEVA++
Sbjct: 62 TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNK 203
+RF+QLYV+K R++ A LV+RAER GFKA+ LT DTPRLGRREADIKN+
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNR 171
>pdb|1GOX|A Chain A, Refined Structure Of Spinach Glycolate Oxidase At 2
Angstroms Resolution
Length = 370
Score = 219 bits (559), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 107/170 (62%), Positives = 138/170 (81%)
Query: 34 EPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLS 93
E N+NE++ +A+ LPKM YD+YA GAED+ TL EN AF RI FRPRIL+DV+ ID++
Sbjct: 3 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 62
Query: 94 TTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCN 153
TTIL +KIS PI+IAPTA+ K+A+PEGE ATARAA++ TIM LS ++SS+EEVA++
Sbjct: 63 TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 122
Query: 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNK 203
+RF+QLYV+K R++ A LV+RAER GFKA+ LT DTPRLGRREADIKN+
Sbjct: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNR 172
>pdb|2RDT|A Chain A, Crystal Structure Of Human Glycolate Oxidase (Go) In
Complex With Cdst
pdb|2RDU|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex
With Glyoxylate
pdb|2RDW|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex
With Sulfate
Length = 387
Score = 159 bits (403), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 77/180 (42%), Positives = 120/180 (66%), Gaps = 1/180 (0%)
Query: 25 HVCRFQMAAEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRIL 84
+ R M + +N++++ A+ LPK YD+Y GA DE TL +N+ AF R PR+L
Sbjct: 12 QMGRGSMLPRLICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRML 71
Query: 85 VDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSS 144
+V+ DLST++L ++S PI + TA+ ++A+ +GE+AT RA S T M+LS ++SS
Sbjct: 72 RNVAETDLSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSS 131
Query: 145 IEEVA-ASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNK 203
IEEVA A A+R+ QLY++K R++ LV++AE+ G+KA+ +T DTP LG R D++N+
Sbjct: 132 IEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNR 191
>pdb|2NZL|A Chain A, Crystal Structure Of Human Hydroxyacid Oxidase 1
Length = 392
Score = 159 bits (403), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 83/194 (42%), Positives = 130/194 (67%), Gaps = 7/194 (3%)
Query: 12 ASGIDLLEKLINVHVCRFQ-MAAEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKEN 70
+SG+DL + N++ FQ M + +N++++ A+ LPK YD+Y GA DE TL +N
Sbjct: 8 SSGVDLGTE--NLY---FQSMLPRLICINDYEQHAKSVLPKSIYDYYRSGANDEETLADN 62
Query: 71 VEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAAS 130
+ AF R PR+L +V+ DLST++L ++S PI + TA+ ++A+ +GE+AT RA S
Sbjct: 63 IAAFSRWKLYPRMLRNVAETDLSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQS 122
Query: 131 CNTIMVLSFTSSSSIEEVA-ASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTAD 189
T M+LS ++SSIEEVA A A+R+ QLY++K R++ LV++AE+ G+KA+ +T D
Sbjct: 123 LGTGMMLSSWATSSIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVD 182
Query: 190 TPRLGRREADIKNK 203
TP LG R D++N+
Sbjct: 183 TPYLGNRLDDVRNR 196
>pdb|2W0U|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate.
pdb|2W0U|B Chain B, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate.
pdb|2W0U|C Chain C, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate.
pdb|2W0U|D Chain D, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate
Length = 370
Score = 158 bits (399), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/167 (44%), Positives = 116/167 (69%), Gaps = 1/167 (0%)
Query: 38 LNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTIL 97
+N++++ A+ LPK YD+Y GA DE TL +N+ AF R PR+L +V+ DLST++L
Sbjct: 8 INDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLSTSVL 67
Query: 98 DYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVA-ASCNAVR 156
++S PI + TA+ ++A+ +GE+AT RA S T M+LS ++SSIEEVA A A+R
Sbjct: 68 GQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPEALR 127
Query: 157 FYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNK 203
+ QLY++K R++ LV++AE+ G+KA+ +T DTP LG R D++N+
Sbjct: 128 WLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNR 174
>pdb|1TB3|A Chain A, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|B Chain B, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|C Chain C, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|D Chain D, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|E Chain E, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|F Chain F, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|G Chain G, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|H Chain H, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
Length = 352
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/169 (47%), Positives = 107/169 (63%), Gaps = 1/169 (0%)
Query: 36 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTT 95
V L +F+ A+ L K +DF G A+D T EN+ AF RI RPR L D+S++D TT
Sbjct: 3 VCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTT 62
Query: 96 ILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEE-VAASCNA 154
I +ISAPI I+PTA H +A P+GE +TARAA N V+S +S S+E+ VAA+
Sbjct: 63 IQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEG 122
Query: 155 VRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNK 203
R++QLY+ D +VQRAE GFKALV+T DTP LG R D +N+
Sbjct: 123 FRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQ 171
>pdb|3SGZ|A Chain A, High Resolution Crystal Structure Of Rat Long Chain
Hydroxy Acid Oxidase In Complex With The Inhibitor
4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2,
3-Thiadiazole.
pdb|3SGZ|B Chain B, High Resolution Crystal Structure Of Rat Long Chain
Hydroxy Acid Oxidase In Complex With The Inhibitor
4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2,
3-Thiadiazole.
pdb|3SGZ|C Chain C, High Resolution Crystal Structure Of Rat Long Chain
Hydroxy Acid Oxidase In Complex With The Inhibitor
4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2,
3-Thiadiazole
Length = 352
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/169 (47%), Positives = 107/169 (63%), Gaps = 1/169 (0%)
Query: 36 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTT 95
V L +F+ A+ L K +DF G A+D T EN+ AF RI RPR L D+S++D TT
Sbjct: 3 VCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTT 62
Query: 96 ILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEE-VAASCNA 154
I +ISAPI I+PTA H +A P+GE +TARAA N V+S +S S+E+ VAA+
Sbjct: 63 IQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEG 122
Query: 155 VRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNK 203
R++QLY+ D +VQRAE GFKALV+T DTP LG R D +N+
Sbjct: 123 FRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQ 171
>pdb|2A7N|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera
Of (S)- Mandelate Dehydrogenase
pdb|2A7P|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera
Of (S)- Mandelate Dehydrogenase In Complex With Its
Substrate 3-Indolelactate
pdb|2A85|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera
Of (S)- Mandelate Dehydrogenase In Complex With Its
Substrate 2- Hydroxyoctanoate
pdb|3GIY|A Chain A, Crystal Structures Of The G81a Mutant Of The Active
Chimera Of (S)-Mandelate Dehydrogenase And Its Complex
With Two Of Its Substrates
Length = 380
Score = 138 bits (348), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 106/173 (61%), Gaps = 1/173 (0%)
Query: 31 MAAEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRI 90
M+ N+ ++++LA+ LPKM YD+ GGAEDE+ +K N + F + F+P+ LVDVSR
Sbjct: 1 MSQNLFNVEDYRKLAQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRR 60
Query: 91 DLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAA 150
L +L + S P++I PTAL+ P+G++A ARAA VLS S+ SIE++A
Sbjct: 61 SLQAEVLGKRQSMPLLIGPTALNGALWPKGDLALARAATKAGIPFVLSTASNMSIEDLAR 120
Query: 151 SCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNK 203
C+ ++QLYV R+IA +V +A G+ LVLT D G RE D+ N+
Sbjct: 121 QCDGDLWFQLYVI-HREIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNR 172
>pdb|1HUV|A Chain A, Crystal Structure Of A Soluble Mutant Of The
Membrane-Associated (S)- Mandelate Dehydrogenase From
Pseudomonas Putida At 2.15a Resolution
pdb|1P4C|A Chain A, High Resolution Structure Of Oxidized Active Mutant Of
(S)- Mandelate Dehydrogenase
pdb|1P5B|A Chain A, High Resolution Structure Of Reduced Active Mutant Of
(S)-Mandelate Dehydrogenase
Length = 380
Score = 137 bits (346), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 105/173 (60%), Gaps = 1/173 (0%)
Query: 31 MAAEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRI 90
M+ N+ ++++LA+ LPKM YD+ GGAEDE+ +K N + F + F+P+ LVDVSR
Sbjct: 1 MSQNLFNVEDYRKLAQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRR 60
Query: 91 DLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAA 150
L +L + S P++I PT L+ P+G++A ARAA VLS S+ SIE++A
Sbjct: 61 SLQAEVLGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTASNMSIEDLAR 120
Query: 151 SCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNK 203
C+ ++QLYV R+IA +V +A G+ LVLT D G RE D+ N+
Sbjct: 121 QCDGDLWFQLYVI-HREIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNR 172
>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LDC|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
Length = 511
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 101/174 (58%), Gaps = 6/174 (3%)
Query: 36 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTT 95
+NL +F+ LA L K + FY+ GA DE T +EN A+HRI F+P+ILVDV ++D+ST
Sbjct: 123 INLYDFEYLASQTLTKQAWAFYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTD 182
Query: 96 ILDYKISAPIIIAPTALHKLANP-EGEVATARAAASCNT-----IMVLSFTSSSSIEEVA 149
+L + P ++ TAL KL NP EGE AR T I L+ S I E A
Sbjct: 183 MLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAA 242
Query: 150 ASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNK 203
S +++YQLYV R I LV+ E+ G KAL +T D P LG+RE D+K K
Sbjct: 243 PSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLK 296
>pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBJ|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 412
Score = 134 bits (336), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 101/174 (58%), Gaps = 6/174 (3%)
Query: 36 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTT 95
+NL +F+ LA L K + +Y+ GA DE T +EN A+HRI F+P+ILVDV ++D+ST
Sbjct: 24 INLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTD 83
Query: 96 ILDYKISAPIIIAPTALHKLANP-EGEVATARAAASCNT-----IMVLSFTSSSSIEEVA 149
+L + P ++ TAL KL NP EGE AR T I L+ S I E A
Sbjct: 84 MLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAA 143
Query: 150 ASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNK 203
S +++YQLYV R I LV+ E+ G KAL +T D P LG+RE D+K K
Sbjct: 144 PSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLK 197
>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
pdb|1LTD|B Chain B, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
Length = 506
Score = 134 bits (336), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 101/174 (58%), Gaps = 6/174 (3%)
Query: 36 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTT 95
+NL +F+ LA L K + +Y+ GA DE T +EN A+HRI F+P+ILVDV ++D+ST
Sbjct: 118 INLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTD 177
Query: 96 ILDYKISAPIIIAPTALHKLANP-EGEVATARAAASCNT-----IMVLSFTSSSSIEEVA 149
+L + P ++ TAL KL NP EGE AR T I L+ S I E A
Sbjct: 178 MLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAA 237
Query: 150 ASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNK 203
S +++YQLYV R I LV+ E+ G KAL +T D P LG+RE D+K K
Sbjct: 238 PSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLK 291
>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1FCB|B Chain B, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1KBI|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBI|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 511
Score = 133 bits (335), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 101/174 (58%), Gaps = 6/174 (3%)
Query: 36 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTT 95
+NL +F+ LA L K + +Y+ GA DE T +EN A+HRI F+P+ILVDV ++D+ST
Sbjct: 123 INLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTD 182
Query: 96 ILDYKISAPIIIAPTALHKLANP-EGEVATARAAASCNT-----IMVLSFTSSSSIEEVA 149
+L + P ++ TAL KL NP EGE AR T I L+ S I E A
Sbjct: 183 MLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAA 242
Query: 150 ASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNK 203
S +++YQLYV R I LV+ E+ G KAL +T D P LG+RE D+K K
Sbjct: 243 PSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLK 296
>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
pdb|2OZ0|B Chain B, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
Length = 511
Score = 133 bits (335), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 101/174 (58%), Gaps = 6/174 (3%)
Query: 36 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTT 95
+NL +F+ LA L K + +Y+ GA DE T +EN A+HRI F+P+ILVDV ++D+ST
Sbjct: 123 INLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTD 182
Query: 96 ILDYKISAPIIIAPTALHKLANP-EGEVATARAAASCNT-----IMVLSFTSSSSIEEVA 149
+L + P ++ TAL KL NP EGE AR T I L+ S I E A
Sbjct: 183 MLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAA 242
Query: 150 ASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNK 203
S +++YQLYV R I LV+ E+ G KAL +T D P LG+RE D+K K
Sbjct: 243 PSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLK 296
>pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant
pdb|1QCW|B Chain B, Flavocytochrome B2, Arg289lys Mutant
Length = 410
Score = 132 bits (332), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 101/174 (58%), Gaps = 6/174 (3%)
Query: 36 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTT 95
+NL +F+ LA L K + +Y+ GA DE T +EN A+HRI F+P+ILVDV ++D+ST
Sbjct: 22 INLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTD 81
Query: 96 ILDYKISAPIIIAPTALHKLANP-EGEVATARAAASCNT-----IMVLSFTSSSSIEEVA 149
+L + P ++ TAL KL NP EGE AR T I L+ S I E A
Sbjct: 82 MLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAA 141
Query: 150 ASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNK 203
S +++YQLYV R I LV+ E+ G KAL +T D P LG++E D+K K
Sbjct: 142 PSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQKEKDMKLK 195
>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate
pdb|1SZE|B Chain B, L230a Mutant Flavocytochrome B2 With Benzoylformate
Length = 511
Score = 132 bits (332), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 105/174 (60%), Gaps = 6/174 (3%)
Query: 36 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTT 95
+NL +F+ LA L K + +Y+ GA DE T +EN A+HRI F+P+ILVDV ++D+ST
Sbjct: 123 INLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTD 182
Query: 96 ILDYKISAPIIIAPTALHKLANP-EGEVATARAAASCNTIM--VLSFTSSSSIEEV---A 149
+L + P ++ TAL KL NP EGE AR T + ++S +S S EE+ A
Sbjct: 183 MLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTAASCSPEEIIEAA 242
Query: 150 ASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNK 203
S +++YQLYV R I LV+ E+ G KAL +T D P LG+RE D+K K
Sbjct: 243 PSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLK 296
>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZF|B Chain B, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZG|A Chain A, A198g:l230a Flavocytochrome B2 With Sulfite Bound
pdb|1SZG|B Chain B, A198g:l230a Flavocytochrome B2 With Sulfite Bound
Length = 511
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 104/174 (59%), Gaps = 6/174 (3%)
Query: 36 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTT 95
+NL +F+ LA L K + +Y+ GA DE T +EN A+HRI F+P+ILVDV ++D+ST
Sbjct: 123 INLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTD 182
Query: 96 ILDYKISAPIIIAPTALHKLANP-EGEVATARAAASCNTIM--VLSFTSSSSIEEV---A 149
+L + P ++ T L KL NP EGE AR T + ++S +S S EE+ A
Sbjct: 183 MLGSHVDVPFYVSATGLCKLGNPLEGEKDVARGCGQGVTKVPQMISTAASCSPEEIIEAA 242
Query: 150 ASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNK 203
S +++YQLYV R I LV+ E+ G KAL +T D P LG+RE D+K K
Sbjct: 243 PSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLK 296
>pdb|2CDH|0 Chain 0, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|1 Chain 1, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|2 Chain 2, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|3 Chain 3, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|Y Chain Y, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|Z Chain Z, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 226
Score = 113 bits (282), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 58/95 (61%), Positives = 78/95 (82%)
Query: 93 STTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASC 152
+TTIL +KIS PI+IAPTA+ K+A+PEGE ATARAA++ TIM LS ++SS+EEVA++
Sbjct: 1 TTTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTG 60
Query: 153 NAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187
+RF+QLYV+K R++ A LV+RAER GFKA+ LT
Sbjct: 61 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 95
>pdb|2J6X|A Chain A, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|B Chain B, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|C Chain C, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|D Chain D, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|E Chain E, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|F Chain F, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|G Chain G, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|H Chain H, The Crystal Structure Of Lactate Oxidase
Length = 374
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 94/169 (55%), Gaps = 1/169 (0%)
Query: 36 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTT 95
VN + +E A +P +++ AG + DE T + N A+ PR+ DV D ST
Sbjct: 20 VNTYDLEEEASKVVPHGGFNYIAGASGDEWTKRANDRAWKHKLLYPRLAQDVEAPDTSTE 79
Query: 96 ILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCN-A 154
IL +KI AP I+AP A H LA+ E TARA + TIM +S S ++ EE++ N
Sbjct: 80 ILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSGATFEEISEGLNGG 139
Query: 155 VRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNK 203
R++Q+Y+ K ++ A+ +G A++LTAD+ G R+ D+KNK
Sbjct: 140 PRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNK 188
>pdb|2DU2|A Chain A, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2DU2|B Chain B, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2DU2|C Chain C, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2DU2|D Chain D, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2E77|A Chain A, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2E77|B Chain B, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2E77|C Chain C, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2E77|D Chain D, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2ZFA|A Chain A, Structure Of Lactate Oxidase At Ph4.5 From Aerococcus
Viridans
pdb|2ZFA|B Chain B, Structure Of Lactate Oxidase At Ph4.5 From Aerococcus
Viridans
Length = 374
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 94/169 (55%), Gaps = 1/169 (0%)
Query: 36 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTT 95
VN + +E A +P +++ AG + DE T + N A+ PR+ DV D ST
Sbjct: 20 VNTYDLEEEASKVVPHGGFNYIAGASGDEWTKRANDRAWKHKLLYPRLAQDVEAPDTSTE 79
Query: 96 ILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCN-A 154
IL +KI AP I+AP A H LA+ E TARA + TIM +S S ++ EE++ N
Sbjct: 80 ILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSGATFEEISEGLNGG 139
Query: 155 VRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNK 203
R++Q+Y+ K ++ A+ +G A++LTAD+ G R+ D+KNK
Sbjct: 140 PRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNK 188
>pdb|2NLI|A Chain A, Crystal Structure Of The Complex Between L-Lactate Oxidase
And A Substrate Analogue At 1.59 Angstrom Resolution
pdb|2NLI|B Chain B, Crystal Structure Of The Complex Between L-Lactate Oxidase
And A Substrate Analogue At 1.59 Angstrom Resolution
Length = 368
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 94/169 (55%), Gaps = 1/169 (0%)
Query: 36 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTT 95
VN + +E A +P +++ AG + DE T + N A+ PR+ DV D ST
Sbjct: 14 VNTYDLEEEASKVVPHGGFNYIAGASGDEWTKRANDRAWKHKLLYPRLAQDVEAPDTSTE 73
Query: 96 ILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCN-A 154
IL +KI AP I+AP A H LA+ E TARA + TIM +S S ++ EE++ N
Sbjct: 74 ILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSGATFEEISEGLNGG 133
Query: 155 VRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNK 203
R++Q+Y+ K ++ A+ +G A++LTAD+ G R+ D+KNK
Sbjct: 134 PRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNK 182
>pdb|1DT3|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT3|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|E Chain E, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|F Chain F, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|G Chain G, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|H Chain H, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DU4|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1EIN|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1TIB|A Chain A, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|4DYH|A Chain A, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4DYH|B Chain B, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4EA6|A Chain A, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4EA6|B Chain B, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4FLF|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4FLF|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4GBG|A Chain A, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GBG|B Chain B, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GI1|A Chain A, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GI1|B Chain B, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GLB|A Chain A, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GLB|B Chain B, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GWL|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GWL|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GHW|A Chain A, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
pdb|4GHW|B Chain B, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
Length = 269
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Query: 120 GEVATARAAASCNTIMVLSFTSSSSIE-----------EVAASCNAVRFYQLYVFKKRDI 168
G+V A + N ++VLSF S SIE E+ C+ R + + R +
Sbjct: 61 GDVTGFLALDNTNKLIVLSFRGSRSIENWIGNLNFDLKEINDICSGCRGHDGFTSSWRSV 120
Query: 169 AATLVQRAE 177
A TL Q+ E
Sbjct: 121 ADTLRQKVE 129
>pdb|1GT6|A Chain A, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
pdb|1GT6|B Chain B, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
Length = 269
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Query: 120 GEVATARAAASCNTIMVLSFTSSSSIE-----------EVAASCNAVRFYQLYVFKKRDI 168
G+V A + N ++VLSF S SIE E+ C+ R + + R +
Sbjct: 61 GDVTGFLALDNTNKLIVLSFRGSRSIENWIGNLNFDLKEINDICSGCRGHDGFTSSWRSV 120
Query: 169 AATLVQRAE 177
A TL Q+ E
Sbjct: 121 ADTLRQKVE 129
>pdb|1TAQ|A Chain A, Structure Of Taq Dna Polymerase
Length = 832
Score = 28.9 bits (63), Expect = 2.2, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 163 FKKRDIAATLVQRAERNGFKALVLTAD 189
++ D+ A+L ++AE+ G++ +LTAD
Sbjct: 116 YEADDVLASLAKKAEKEGYEVRILTAD 142
>pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An Inhibitory Fab
pdb|1TAU|A Chain A, Taq Polymerase (E.C.2.7.7.7)DNAB-Octylglucoside Complex
Length = 832
Score = 28.9 bits (63), Expect = 2.2, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 163 FKKRDIAATLVQRAERNGFKALVLTAD 189
++ D+ A+L ++AE+ G++ +LTAD
Sbjct: 116 YEADDVLASLAKKAEKEGYEVRILTAD 142
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 4 SDLCMQYVASGIDLLEKLINVHVCRFQMAAEPVNLNEFQELARLALPKMYYDFYAGGAED 63
SDL M +V SG D L KL + C F A N ++ + + L + F A
Sbjct: 469 SDLGMHHVLSGCDSLRKL-EIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLG 527
Query: 64 EHTLKENVE 72
+ K NVE
Sbjct: 528 QKMPKLNVE 536
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,245,852
Number of Sequences: 62578
Number of extensions: 183836
Number of successful extensions: 436
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 393
Number of HSP's gapped (non-prelim): 30
length of query: 203
length of database: 14,973,337
effective HSP length: 94
effective length of query: 109
effective length of database: 9,091,005
effective search space: 990919545
effective search space used: 990919545
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)