Query 028827
Match_columns 203
No_of_seqs 170 out of 1273
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 04:29:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028827.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028827hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sgz_A Hydroxyacid oxidase 2; 100.0 6E-58 2E-62 411.1 17.8 169 35-203 2-171 (352)
2 2nzl_A Hydroxyacid oxidase 1; 100.0 3.8E-48 1.3E-52 351.7 18.7 170 34-203 26-196 (392)
3 2nli_A Lactate oxidase; flavoe 100.0 1.3E-47 4.4E-52 345.5 17.9 175 29-203 7-182 (368)
4 1p4c_A L(+)-mandelate dehydrog 100.0 9E-47 3.1E-51 341.1 18.8 170 33-203 3-172 (380)
5 1gox_A (S)-2-hydroxy-acid oxid 100.0 2.8E-46 9.4E-51 336.5 18.8 170 34-203 3-172 (370)
6 1kbi_A Cytochrome B2, L-LCR; f 100.0 8.4E-46 2.9E-50 346.1 19.1 178 23-203 113-296 (511)
7 2qr6_A IMP dehydrogenase/GMP r 99.8 2.4E-22 8.2E-27 181.1 -2.5 131 46-185 13-160 (393)
8 1vcf_A Isopentenyl-diphosphate 99.7 3.2E-19 1.1E-23 157.6 0.7 126 54-190 8-155 (332)
9 3r2g_A Inosine 5'-monophosphat 99.6 1.4E-15 4.9E-20 136.7 8.1 111 72-192 8-122 (361)
10 3sr7_A Isopentenyl-diphosphate 99.6 2.7E-15 9.2E-20 135.0 8.7 115 72-190 54-178 (365)
11 1p0k_A Isopentenyl-diphosphate 99.6 3.6E-15 1.2E-19 132.2 8.8 118 71-192 22-152 (349)
12 3vkj_A Isopentenyl-diphosphate 99.4 9.6E-13 3.3E-17 118.4 7.8 116 72-190 27-158 (368)
13 1ypf_A GMP reductase; GUAC, pu 99.2 1.7E-12 5.8E-17 114.9 1.2 115 65-188 7-128 (336)
14 1eep_A Inosine 5'-monophosphat 99.1 1.3E-10 4.6E-15 104.8 5.9 73 72-152 10-84 (404)
15 2c6q_A GMP reductase 2; TIM ba 99.0 5.6E-10 1.9E-14 99.6 7.1 115 66-189 14-141 (351)
16 1gte_A Dihydropyrimidine dehyd 98.2 7.4E-06 2.5E-10 81.6 10.7 108 80-193 521-674 (1025)
17 3khj_A Inosine-5-monophosphate 97.7 0.00018 6E-09 64.3 10.0 100 73-187 14-124 (361)
18 1f76_A Dihydroorotate dehydrog 97.5 6.9E-05 2.3E-09 65.4 4.1 42 89-137 42-83 (336)
19 4fo4_A Inosine 5'-monophosphat 97.1 0.0022 7.5E-08 57.4 9.2 106 73-188 15-128 (366)
20 2e6f_A Dihydroorotate dehydrog 97.0 0.0034 1.2E-07 53.9 9.4 97 90-193 2-135 (314)
21 1ep3_A Dihydroorotate dehydrog 96.7 0.0026 8.8E-08 54.2 6.2 99 88-193 3-138 (311)
22 1vhn_A Putative flavin oxidore 96.2 0.0043 1.5E-07 53.8 4.7 88 100-196 2-99 (318)
23 1jub_A Dihydroorotate dehydrog 96.2 0.037 1.3E-06 47.3 10.6 95 92-193 2-133 (311)
24 2z6i_A Trans-2-enoyl-ACP reduc 95.4 0.038 1.3E-06 48.0 7.5 87 94-191 6-99 (332)
25 2gjl_A Hypothetical protein PA 95.3 0.1 3.4E-06 45.1 9.7 90 94-191 9-107 (328)
26 3tjx_A Dihydroorotate dehydrog 94.6 0.058 2E-06 47.3 6.4 99 88-193 33-168 (354)
27 3b0p_A TRNA-dihydrouridine syn 92.8 0.22 7.4E-06 43.7 6.7 86 101-193 2-96 (350)
28 1wv2_A Thiazole moeity, thiazo 92.7 0.069 2.3E-06 45.8 3.2 50 152-201 100-156 (265)
29 1ea0_A Glutamate synthase [NAD 92.7 0.075 2.6E-06 55.1 4.0 63 73-141 824-888 (1479)
30 3bw2_A 2-nitropropane dioxygen 92.3 0.63 2.1E-05 40.8 9.1 84 102-191 10-133 (369)
31 4ef8_A Dihydroorotate dehydrog 91.5 1.2 4E-05 39.4 9.9 106 81-193 26-168 (354)
32 3bo9_A Putative nitroalkan dio 90.6 1.5 5.2E-05 37.8 9.7 83 100-191 24-113 (326)
33 3ffs_A Inosine-5-monophosphate 90.5 0.31 1.1E-05 44.0 5.2 70 73-150 11-82 (400)
34 3oix_A Putative dihydroorotate 90.0 1.8 6E-05 38.1 9.6 96 90-193 36-168 (345)
35 1ofd_A Ferredoxin-dependent gl 87.2 0.34 1.2E-05 50.4 3.4 63 74-142 842-906 (1520)
36 3glc_A Aldolase LSRF; TIM barr 80.2 11 0.00038 32.3 9.6 66 122-187 192-257 (295)
37 1z41_A YQJM, probable NADH-dep 69.0 45 0.0015 28.5 10.7 21 93-113 8-28 (338)
38 1tv5_A Dhodehase, dihydroorota 68.4 25 0.00084 31.8 9.1 109 77-193 68-222 (443)
39 4af0_A Inosine-5'-monophosphat 66.2 11 0.00038 35.4 6.4 66 73-148 61-130 (556)
40 1vyr_A Pentaerythritol tetrani 66.2 60 0.002 28.2 11.0 46 93-138 8-56 (364)
41 1jub_A Dihydroorotate dehydrog 65.4 28 0.00097 29.0 8.5 82 102-187 93-192 (311)
42 2gou_A Oxidoreductase, FMN-bin 65.3 26 0.00088 30.6 8.4 45 94-138 9-56 (365)
43 3ks6_A Glycerophosphoryl diest 62.3 12 0.0004 30.7 5.3 72 120-191 118-215 (250)
44 3zwt_A Dihydroorotate dehydrog 59.3 7.9 0.00027 34.1 4.0 44 64-109 24-67 (367)
45 2jz7_A Selenium binding protei 56.9 9.9 0.00034 26.7 3.4 26 166-191 34-60 (81)
46 4fxs_A Inosine-5'-monophosphat 53.1 17 0.00059 33.1 5.3 102 74-188 13-127 (496)
47 1vr4_A Hypothetical protein AP 52.9 12 0.0004 27.2 3.4 28 166-193 59-87 (103)
48 2uva_G Fatty acid synthase bet 52.5 26 0.0009 37.7 7.1 102 79-188 558-676 (2060)
49 1vr6_A Phospho-2-dehydro-3-deo 52.3 25 0.00087 30.9 6.0 34 118-151 156-189 (350)
50 3k30_A Histamine dehydrogenase 52.0 1E+02 0.0035 28.6 10.6 20 93-112 17-36 (690)
51 3qkb_A Uncharacterized protein 51.9 13 0.00043 27.7 3.4 26 166-191 61-87 (111)
52 2r91_A 2-keto-3-deoxy-(6-phosp 51.2 62 0.0021 27.0 8.1 81 104-187 5-97 (286)
53 1zfj_A Inosine monophosphate d 51.0 33 0.0011 30.6 6.8 104 73-187 13-127 (491)
54 2q5c_A NTRC family transcripti 50.9 55 0.0019 25.8 7.4 85 94-185 62-147 (196)
55 2r14_A Morphinone reductase; H 50.7 84 0.0029 27.4 9.2 21 93-113 14-34 (377)
56 1gvf_A Tagatose-bisphosphate a 50.5 15 0.00052 31.4 4.2 67 118-188 28-105 (286)
57 3rjz_A N-type ATP pyrophosphat 50.5 14 0.00047 30.7 3.8 86 98-194 59-153 (237)
58 3l12_A Putative glycerophospho 50.4 18 0.00061 30.5 4.7 70 122-191 168-279 (313)
59 2cu0_A Inosine-5'-monophosphat 49.6 32 0.0011 30.9 6.5 39 74-112 17-57 (486)
60 3usb_A Inosine-5'-monophosphat 49.0 40 0.0014 30.8 7.0 107 74-189 37-152 (511)
61 3e96_A Dihydrodipicolinate syn 48.7 65 0.0022 27.3 8.0 87 103-193 16-117 (316)
62 3qvq_A Phosphodiesterase OLEI0 48.6 18 0.0006 29.6 4.2 58 135-192 146-222 (252)
63 4avf_A Inosine-5'-monophosphat 48.3 30 0.001 31.4 6.0 39 74-112 12-52 (490)
64 2ehh_A DHDPS, dihydrodipicolin 48.3 90 0.0031 26.1 8.7 82 104-187 7-102 (294)
65 1vs1_A 3-deoxy-7-phosphoheptul 47.5 34 0.0012 28.9 5.9 34 118-151 88-121 (276)
66 1x60_A Sporulation-specific N- 47.3 54 0.0018 21.5 5.9 30 156-185 10-39 (79)
67 3m5v_A DHDPS, dihydrodipicolin 46.9 83 0.0028 26.4 8.3 82 104-187 14-110 (301)
68 3zen_D Fatty acid synthase; tr 46.2 61 0.0021 36.4 8.9 105 79-191 403-527 (3089)
69 2e6f_A Dihydroorotate dehydrog 46.1 26 0.00088 29.3 5.0 40 148-187 155-195 (314)
70 3sho_A Transcriptional regulat 45.7 86 0.0029 23.5 7.6 61 129-189 62-123 (187)
71 1nh8_A ATP phosphoribosyltrans 45.4 41 0.0014 29.1 6.1 59 129-187 228-297 (304)
72 2yxg_A DHDPS, dihydrodipicolin 44.9 94 0.0032 25.9 8.3 82 104-187 7-102 (289)
73 2v9d_A YAGE; dihydrodipicolini 44.2 1.1E+02 0.0039 26.2 8.9 84 103-187 36-133 (343)
74 1y2i_A Hypothetical protein S0 43.9 16 0.00055 27.8 3.0 29 166-194 83-112 (133)
75 3mz2_A Glycerophosphoryl diest 43.6 52 0.0018 27.6 6.5 29 163-191 211-239 (292)
76 1o5k_A DHDPS, dihydrodipicolin 43.3 86 0.0029 26.4 7.9 82 104-187 19-114 (306)
77 2oog_A Glycerophosphoryl diest 43.2 20 0.00068 29.8 3.7 72 120-191 149-252 (287)
78 3a5f_A Dihydrodipicolinate syn 43.1 1E+02 0.0036 25.6 8.3 82 104-187 8-103 (291)
79 2pju_A Propionate catabolism o 43.1 61 0.0021 26.4 6.7 86 93-185 73-159 (225)
80 1aj0_A DHPS, dihydropteroate s 43.0 59 0.002 27.5 6.7 22 166-187 162-185 (282)
81 3flu_A DHDPS, dihydrodipicolin 42.5 1.3E+02 0.0044 25.1 8.8 84 104-188 13-110 (297)
82 3nvt_A 3-deoxy-D-arabino-heptu 42.0 29 0.001 30.8 4.8 32 103-137 143-174 (385)
83 1tx2_A DHPS, dihydropteroate s 41.9 69 0.0024 27.3 7.0 23 166-188 181-205 (297)
84 1f76_A Dihydroorotate dehydrog 41.8 39 0.0013 28.5 5.5 34 154-187 212-245 (336)
85 3l21_A DHDPS, dihydrodipicolin 41.0 1.3E+02 0.0046 25.2 8.8 84 103-187 20-117 (304)
86 3eb2_A Putative dihydrodipicol 40.6 98 0.0033 26.0 7.8 84 104-188 10-107 (300)
87 3no3_A Glycerophosphodiester p 40.2 33 0.0011 27.7 4.6 70 122-191 118-207 (238)
88 3nk6_A 23S rRNA methyltransfer 40.1 97 0.0033 25.9 7.6 57 130-188 96-152 (277)
89 3dz1_A Dihydrodipicolinate syn 40.1 1.2E+02 0.0041 25.6 8.3 84 103-187 13-109 (313)
90 3cpr_A Dihydrodipicolinate syn 40.0 1.6E+02 0.0056 24.6 9.2 84 103-187 21-118 (304)
91 3na8_A Putative dihydrodipicol 39.8 1.1E+02 0.0039 25.8 8.1 85 103-188 29-127 (315)
92 3tak_A DHDPS, dihydrodipicolin 39.8 1.2E+02 0.0039 25.3 8.1 83 104-187 7-103 (291)
93 3b4u_A Dihydrodipicolinate syn 39.6 1.6E+02 0.0053 24.6 8.9 83 104-187 9-105 (294)
94 3qze_A DHDPS, dihydrodipicolin 39.4 1.1E+02 0.0039 25.8 8.1 84 103-187 28-125 (314)
95 2nuw_A 2-keto-3-deoxygluconate 39.1 94 0.0032 25.9 7.4 82 104-187 5-98 (288)
96 2dqw_A Dihydropteroate synthas 39.0 1E+02 0.0035 26.2 7.7 22 166-187 176-197 (294)
97 3i65_A Dihydroorotate dehydrog 38.7 25 0.00085 31.6 3.9 33 76-109 69-101 (415)
98 2h9a_B CO dehydrogenase/acetyl 38.6 83 0.0029 27.0 7.1 85 102-194 122-214 (310)
99 2y5s_A DHPS, dihydropteroate s 38.5 82 0.0028 26.8 7.0 22 166-187 170-193 (294)
100 1xky_A Dihydrodipicolinate syn 38.4 1.6E+02 0.0056 24.6 8.9 84 104-188 18-115 (301)
101 2vc6_A MOSA, dihydrodipicolina 38.3 1.2E+02 0.0041 25.2 7.9 83 104-188 7-103 (292)
102 3si9_A DHDPS, dihydrodipicolin 38.3 1.5E+02 0.005 25.1 8.6 84 103-187 27-124 (315)
103 3viv_A 441AA long hypothetical 38.3 28 0.00096 28.6 3.8 27 166-192 24-50 (230)
104 1zco_A 2-dehydro-3-deoxyphosph 38.2 50 0.0017 27.5 5.4 34 118-151 73-106 (262)
105 3d0c_A Dihydrodipicolinate syn 37.6 1.2E+02 0.0039 25.7 7.8 82 104-187 17-113 (314)
106 1f6k_A N-acetylneuraminate lya 37.4 1.5E+02 0.0051 24.6 8.4 83 104-187 9-106 (293)
107 2wkj_A N-acetylneuraminate lya 37.2 1.6E+02 0.0056 24.6 8.7 83 104-187 17-113 (303)
108 3fkr_A L-2-keto-3-deoxyarabona 37.2 1.1E+02 0.0038 25.8 7.6 88 103-193 13-114 (309)
109 3igs_A N-acetylmannosamine-6-p 37.2 35 0.0012 27.8 4.3 66 117-188 34-109 (232)
110 3lmz_A Putative sugar isomeras 36.7 91 0.0031 24.6 6.7 84 100-187 15-109 (257)
111 1ps9_A 2,4-dienoyl-COA reducta 36.6 2.6E+02 0.0087 25.8 11.2 20 93-112 8-27 (671)
112 1w3i_A EDA, 2-keto-3-deoxy glu 36.6 1.1E+02 0.0038 25.5 7.5 86 104-193 5-102 (293)
113 3sz8_A 2-dehydro-3-deoxyphosph 36.5 66 0.0022 27.4 6.0 40 118-160 77-116 (285)
114 3s5o_A 4-hydroxy-2-oxoglutarat 36.3 1.6E+02 0.0053 24.8 8.4 83 104-187 20-116 (307)
115 2rfg_A Dihydrodipicolinate syn 36.2 1.1E+02 0.0038 25.6 7.4 82 104-187 7-102 (297)
116 2fiq_A Putative tagatose 6-pho 35.6 1.4E+02 0.0048 26.8 8.3 74 116-189 22-126 (420)
117 3q58_A N-acetylmannosamine-6-p 35.5 35 0.0012 27.8 4.0 64 117-188 34-109 (229)
118 3txv_A Probable tagatose 6-pho 35.3 43 0.0015 30.6 4.8 75 116-190 29-134 (450)
119 2isw_A Putative fructose-1,6-b 35.3 27 0.00091 30.5 3.4 67 118-188 28-106 (323)
120 1o94_A Tmadh, trimethylamine d 34.9 2.1E+02 0.0071 26.9 9.8 20 93-112 12-31 (729)
121 1zcc_A Glycerophosphodiester p 34.8 74 0.0025 25.6 5.9 69 123-191 116-205 (248)
122 3q94_A Fructose-bisphosphate a 34.7 24 0.00082 30.2 3.0 66 119-188 32-111 (288)
123 3pm6_A Putative fructose-bisph 33.5 35 0.0012 29.5 3.8 67 118-188 37-121 (306)
124 1x60_A Sporulation-specific N- 33.5 75 0.0026 20.8 4.8 34 154-187 44-77 (79)
125 3fok_A Uncharacterized protein 33.3 95 0.0032 26.8 6.5 89 99-189 173-275 (307)
126 3tr9_A Dihydropteroate synthas 33.2 73 0.0025 27.5 5.8 27 34-61 44-70 (314)
127 3zwt_A Dihydroorotate dehydrog 32.7 70 0.0024 27.9 5.7 34 154-187 221-254 (367)
128 4dpp_A DHDPS 2, dihydrodipicol 32.7 2.3E+02 0.008 24.7 9.1 89 102-193 63-165 (360)
129 2r8w_A AGR_C_1641P; APC7498, d 32.4 1.7E+02 0.006 24.9 8.2 83 104-187 40-136 (332)
130 1rvg_A Fructose-1,6-bisphospha 32.0 31 0.0011 29.8 3.2 23 165-187 80-102 (305)
131 2hmc_A AGR_L_411P, dihydrodipi 32.0 1.8E+02 0.0062 25.0 8.2 83 104-187 32-125 (344)
132 2uv8_G Fatty acid synthase sub 31.0 1.7E+02 0.0058 31.7 9.1 89 94-190 584-683 (2051)
133 2pz0_A Glycerophosphoryl diest 30.9 33 0.0011 27.8 3.1 24 168-191 199-222 (252)
134 1eye_A DHPS 1, dihydropteroate 30.5 1E+02 0.0035 25.9 6.3 23 166-188 154-178 (280)
135 2vd3_A ATP phosphoribosyltrans 30.5 75 0.0026 27.2 5.4 59 129-187 212-282 (289)
136 3n9r_A Fructose-bisphosphate a 30.2 24 0.00082 30.5 2.2 23 165-187 82-104 (307)
137 2ojp_A DHDPS, dihydrodipicolin 29.6 1.5E+02 0.005 24.7 7.1 83 104-187 7-103 (292)
138 3tml_A 2-dehydro-3-deoxyphosph 29.5 92 0.0031 26.5 5.7 41 111-151 67-107 (288)
139 4djd_D C/Fe-SP, corrinoid/iron 29.2 91 0.0031 27.0 5.8 87 101-195 128-222 (323)
140 2wje_A CPS4B, tyrosine-protein 29.2 30 0.001 27.9 2.5 24 165-188 22-45 (247)
141 1vrd_A Inosine-5'-monophosphat 28.8 96 0.0033 27.7 6.1 39 74-112 19-59 (494)
142 2anu_A Hypothetical protein TM 28.6 41 0.0014 27.2 3.3 20 168-187 36-55 (255)
143 1yd7_A 2-keto acid:ferredoxin 28.6 1.6E+02 0.0055 25.6 7.4 66 119-187 24-94 (395)
144 1xx1_A Smase I, sphingomyelina 28.3 29 0.001 28.5 2.4 25 167-191 209-235 (285)
145 1vd6_A Glycerophosphoryl diest 28.1 54 0.0018 26.0 3.9 58 134-191 124-197 (224)
146 3daq_A DHDPS, dihydrodipicolin 27.7 1.9E+02 0.0064 24.0 7.4 82 104-187 9-104 (292)
147 4djd_C C/Fe-SP, corrinoid/iron 27.1 71 0.0024 29.0 4.8 45 142-189 187-234 (446)
148 4gel_A Mitochondrial cardiolip 27.0 1E+02 0.0035 23.9 5.4 37 154-192 72-108 (220)
149 2yci_X 5-methyltetrahydrofolat 26.8 1.2E+02 0.0041 25.3 6.0 25 166-190 146-172 (271)
150 3i65_A Dihydroorotate dehydrog 26.8 1E+02 0.0035 27.6 5.8 32 156-187 272-303 (415)
151 1xm3_A Thiazole biosynthesis p 26.7 47 0.0016 27.4 3.4 14 171-184 138-151 (264)
152 1o1z_A GDPD, glycerophosphodie 26.7 1.8E+02 0.006 23.1 6.8 22 170-191 188-209 (234)
153 3h5d_A DHDPS, dihydrodipicolin 26.3 2.9E+02 0.0099 23.2 8.8 84 104-188 13-111 (311)
154 2otd_A Glycerophosphodiester p 26.3 61 0.0021 26.0 4.0 24 168-191 195-218 (247)
155 3p6l_A Sugar phosphate isomera 25.9 82 0.0028 24.8 4.7 25 163-187 87-111 (262)
156 1gz0_A Hypothetical tRNA/RRNA 25.8 2.1E+02 0.0072 23.3 7.3 60 131-190 78-140 (253)
157 1icp_A OPR1, 12-oxophytodienoa 25.8 3.2E+02 0.011 23.6 10.7 21 170-190 170-190 (376)
158 1ur4_A Galactanase; hydrolase, 25.6 95 0.0032 27.5 5.3 63 122-185 30-107 (399)
159 2z0r_A Putative uncharacterize 25.4 1.6E+02 0.0056 21.4 5.6 43 147-190 41-83 (103)
160 1ydn_A Hydroxymethylglutaryl-C 25.3 1.8E+02 0.0061 24.0 6.8 30 164-194 152-181 (295)
161 2nly_A BH1492 protein, diverge 25.0 2.9E+02 0.0098 22.7 8.5 69 116-186 112-190 (245)
162 3qfe_A Putative dihydrodipicol 24.7 2E+02 0.0069 24.3 7.1 84 104-188 16-114 (318)
163 3rfq_A Pterin-4-alpha-carbinol 24.7 1.8E+02 0.0062 22.8 6.4 42 146-187 55-96 (185)
164 3h6g_A Glutamate receptor, ion 24.7 2.4E+02 0.0083 23.3 7.6 65 120-190 83-147 (395)
165 2xhz_A KDSD, YRBH, arabinose 5 24.2 1.5E+02 0.0051 22.0 5.7 37 153-189 96-132 (183)
166 3fs2_A 2-dehydro-3-deoxyphosph 24.2 69 0.0024 27.5 4.0 39 111-149 91-129 (298)
167 4fnq_A Alpha-galactosidase AGA 24.2 27 0.00093 33.4 1.6 41 157-199 336-376 (729)
168 1f6y_A 5-methyltetrahydrofolat 24.0 1.8E+02 0.0063 23.9 6.6 25 36-61 22-46 (262)
169 2g0w_A LMO2234 protein; putati 23.8 1.8E+02 0.0062 23.4 6.5 20 167-186 105-124 (296)
170 1uta_A FTSN, MSGA, cell divisi 23.2 78 0.0027 21.0 3.4 31 156-186 10-40 (81)
171 1yy3_A S-adenosylmethionine:tR 23.2 70 0.0024 28.2 3.9 109 67-187 142-257 (346)
172 2o55_A Putative glycerophospho 23.0 1.1E+02 0.0036 24.7 4.8 21 168-188 200-220 (258)
173 1mkz_A Molybdenum cofactor bio 22.9 2.5E+02 0.0086 21.3 6.9 31 157-187 45-76 (172)
174 1tv5_A Dhodehase, dihydroorota 22.8 1E+02 0.0036 27.7 5.1 33 156-188 300-332 (443)
175 3etn_A Putative phosphosugar i 22.1 1.5E+02 0.0052 23.2 5.5 36 153-188 106-143 (220)
176 1jvn_A Glutamine, bifunctional 21.9 58 0.002 30.0 3.3 31 157-187 438-472 (555)
177 3ch0_A Glycerophosphodiester p 21.7 67 0.0023 26.0 3.4 25 167-191 223-247 (272)
178 1h3d_A ATP-phosphoribosyltrans 21.6 94 0.0032 26.6 4.3 56 132-187 225-292 (299)
179 1o60_A 2-dehydro-3-deoxyphosph 21.5 1.8E+02 0.0061 24.6 6.1 60 118-182 75-134 (292)
180 3mcm_A 2-amino-4-hydroxy-6-hyd 21.5 1.4E+02 0.0048 27.0 5.7 22 166-187 343-366 (442)
181 2pjk_A 178AA long hypothetical 21.3 2.6E+02 0.0088 21.5 6.6 36 159-195 59-95 (178)
182 3qja_A IGPS, indole-3-glycerol 21.3 98 0.0034 25.8 4.4 60 121-187 127-189 (272)
183 1m3u_A 3-methyl-2-oxobutanoate 21.1 3.4E+02 0.012 22.6 7.7 25 164-188 155-182 (264)
184 3m0z_A Putative aldolase; MCSG 20.8 67 0.0023 27.0 3.1 12 122-133 177-188 (249)
185 1mzh_A Deoxyribose-phosphate a 20.8 1.2E+02 0.0042 24.2 4.7 37 147-184 110-149 (225)
186 2nwr_A 2-dehydro-3-deoxyphosph 20.7 1.7E+02 0.0057 24.5 5.7 40 118-160 61-100 (267)
187 3m6y_A 4-hydroxy-2-oxoglutarat 20.6 75 0.0026 27.0 3.4 12 122-133 200-211 (275)
188 2vp8_A Dihydropteroate synthas 20.4 1.7E+02 0.0058 25.2 5.8 22 167-188 195-218 (318)
189 1vhn_A Putative flavin oxidore 20.2 1.2E+02 0.004 25.4 4.7 18 170-187 143-160 (318)
190 3nk6_A 23S rRNA methyltransfer 20.2 3.7E+02 0.013 22.2 8.0 75 112-190 124-202 (277)
No 1
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=100.00 E-value=6e-58 Score=411.10 Aligned_cols=169 Identities=47% Similarity=0.682 Sum_probs=166.3
Q ss_pred CCCHHHHHHHHHHhCChhhhhhhcCCccchhhHHHHHHHhhccccccccccCCCCCCcceeecCcccCcceEeccccchh
Q 028827 35 PVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHK 114 (203)
Q Consensus 35 ~~~~~d~~~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~af~~i~L~pRvL~dv~~~dtst~l~G~~~s~Pi~iaP~g~~~ 114 (203)
++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|+|||+++++||+|||+|+++
T Consensus 2 ~~~~~d~~~~A~~~lp~~~~~Y~~~ga~~e~t~~~N~~af~~~~l~prvl~dv~~~d~~t~llG~~~~~P~~iaP~g~~~ 81 (352)
T 3sgz_A 2 LVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHS 81 (352)
T ss_dssp CCSHHHHHHHHHHTSCHHHHHHHHCCCTTCHHHHHHHHHHHTCCBCCCCSSCCSSCBCCEEETTEEESSSEEECCCSCGG
T ss_pred CCCHHHHHHHHHHHCCHHHHHHHhcCCcchHHHHHHHHHHHhceeeccccCCCCCCCCceEECCcccCCcceechHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHhhcC-CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 028827 115 LANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCN-AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRL 193 (203)
Q Consensus 115 l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~~~~-~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p~~ 193 (203)
|+||+||.++||||+++|++|++|+++++|+|||+++.+ ++.|||||+++|++.++++|+|||++||+|||||||+|+.
T Consensus 82 l~~~~ge~~~araa~~~gi~~~lSt~ss~s~e~v~~~~~~~~~wfQlY~~~d~~~~~~l~~ra~~aG~~alvlTvD~p~~ 161 (352)
T 3sgz_A 82 IAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVL 161 (352)
T ss_dssp GTCTTHHHHHHHHHHHHTCEEEECTTCSSCHHHHHHHSTTCEEEEECCCCSCHHHHHHHHHHHHHTTCCCEEEECSCSSC
T ss_pred hcCccHHHHHHHHHHHcCCCeEeCCCCCCCHHHHHHhccCccceeccccCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 999999999999999999999999999999999999987 7999999999999999999999999999999999999999
Q ss_pred CCchhhhhcC
Q 028827 194 GRREADIKNK 203 (203)
Q Consensus 194 g~Re~d~r~~ 203 (203)
|+||+|+|||
T Consensus 162 g~R~~d~r~~ 171 (352)
T 3sgz_A 162 GNRRRDKRNQ 171 (352)
T ss_dssp CCCHHHHHHH
T ss_pred CcchhhhhcC
Confidence 9999999985
No 2
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Probab=100.00 E-value=3.8e-48 Score=351.68 Aligned_cols=170 Identities=44% Similarity=0.734 Sum_probs=165.8
Q ss_pred CCCCHHHHHHHHHHhCChhhhhhhcCCccchhhHHHHHHHhhccccccccccCCCCCCcceeecCcccCcceEeccccch
Q 028827 34 EPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALH 113 (203)
Q Consensus 34 ~~~~~~d~~~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~af~~i~L~pRvL~dv~~~dtst~l~G~~~s~Pi~iaP~g~~ 113 (203)
.++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|+|||+++++||+|||||++
T Consensus 26 ~~~~~~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~~f~~i~l~pr~L~~~~~~d~st~i~G~~l~~Pi~iAPmg~~ 105 (392)
T 2nzl_A 26 RLICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLSTSVLGQRVSMPICVGATAMQ 105 (392)
T ss_dssp CCCSHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHHHHHSCBCCCCSSCCTTCBCCEEETTEEESSSEEECCCSCG
T ss_pred cCCCHHHHHHHHHhhCCHHHHhhcCCCCCccHHHHHHHHhhheEEeehhhccCCcCCCcceEECCEecCCceEecccccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHhhc-CCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCCC
Q 028827 114 KLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASC-NAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPR 192 (203)
Q Consensus 114 ~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~~~-~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p~ 192 (203)
++.||+||.++|++|+++|++|++|+++++++|+|+++. +++.|||||+++|++.+.++++||+++||++|+||+|+|+
T Consensus 106 ~l~~~~~e~~laraA~~~G~~~~~s~~~s~~le~v~~~~~~~~~~~QLy~~~d~~~~~~~~~ra~~~G~~al~itvd~p~ 185 (392)
T 2nzl_A 106 RMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPY 185 (392)
T ss_dssp GGTSTTHHHHHHHHHHHHTCEEEECTTCSSCHHHHHHHCTTSEEEEEECCBSSHHHHHHHHHHHHHTTCCCEEEECSCSS
T ss_pred ccccchHHHHHHHHHHHcCCCeeccchHHHHHHHHHHhcCCCcEEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 999999999999999999999999999999999999876 4789999999999999999999999999999999999999
Q ss_pred CCCchhhhhcC
Q 028827 193 LGRREADIKNK 203 (203)
Q Consensus 193 ~g~Re~d~r~~ 203 (203)
.|+|++|+||+
T Consensus 186 ~g~R~~d~r~~ 196 (392)
T 2nzl_A 186 LGNRLDDVRNR 196 (392)
T ss_dssp CCCCHHHHHHT
T ss_pred ccchhHhHhhc
Confidence 99999999985
No 3
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=100.00 E-value=1.3e-47 Score=345.53 Aligned_cols=175 Identities=35% Similarity=0.493 Sum_probs=160.3
Q ss_pred CCCCCCCCCHHHHHHHHHHhCChhhhhhhcCCccchhhHHHHHHHhhccccccccccCCCCCCcceeecCcccCcceEec
Q 028827 29 FQMAAEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIA 108 (203)
Q Consensus 29 ~~~~~~~~~~~d~~~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~af~~i~L~pRvL~dv~~~dtst~l~G~~~s~Pi~ia 108 (203)
.|.+..++|++|||+.||++||+.+|+|++||++||.|+++|+.+|++|+|+||+|+|++++||+|+|||+++++||+||
T Consensus 7 ~~~~~~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~L~~~~~~d~st~i~G~~l~~Pi~iA 86 (368)
T 2nli_A 7 EIKYIDVVNTYDLEEEASKVVPHGGFNYIAGASGDEWTKRANDRAWKHKLLYPRLAQDVEAPDTSTEILGHKIKAPFIMA 86 (368)
T ss_dssp CCCCCCCSCSHHHHHHHHTTSCHHHHHHHHCCSBTSHHHHHHHHGGGGEEECCCCCCCCSCCCCCEEETTEEESSSEEEC
T ss_pred chhhccCCCHHHHHHHHHHhCCHHHHhhcccCCCccHHHHHHHHHHhheeeeccccCCCccCCcceEECCEecCCceeec
Confidence 34466889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHhhc-CCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 028827 109 PTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASC-NAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 109 P~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~~~-~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
|||++++.||+||.++|++|+++|++|++|++++.++|+|+++. +++.|||||+++|++.+.++++||+++||++|+||
T Consensus 87 Pma~~g~~~~~~e~~la~aa~~~G~~~~~s~~~s~~le~v~~~~~~~~~~~QLy~~~d~~~~~~~~~ra~~aG~~ai~it 166 (368)
T 2nli_A 87 PIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSGATFEEISEGLNGGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILT 166 (368)
T ss_dssp CCSCGGGTCTTHHHHHHHHHHHHTCCEEECTTCSSCHHHHHHHHTTCCEEEEECCBSSHHHHHHHHHHHHHTTCSCEEEE
T ss_pred chhhccCCCcHHHHHHHHHHHHcCCCEEeechHhHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHHHHCCCCEEEEc
Confidence 99999999999999999999999999999999999999998876 47899999999999999999999999999999999
Q ss_pred ecCCCCCCchhhhhcC
Q 028827 188 ADTPRLGRREADIKNK 203 (203)
Q Consensus 188 VD~p~~g~Re~d~r~~ 203 (203)
+|+|+.|+|++|+|++
T Consensus 167 ~d~p~~g~r~~d~~~~ 182 (368)
T 2nli_A 167 ADSTVSGNRDRDVKNK 182 (368)
T ss_dssp SBCC---CBC------
T ss_pred CCCCcccchhHHHhhc
Confidence 9999999999999974
No 4
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*
Probab=100.00 E-value=9e-47 Score=341.06 Aligned_cols=170 Identities=41% Similarity=0.678 Sum_probs=164.7
Q ss_pred CCCCCHHHHHHHHHHhCChhhhhhhcCCccchhhHHHHHHHhhccccccccccCCCCCCcceeecCcccCcceEeccccc
Q 028827 33 AEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAL 112 (203)
Q Consensus 33 ~~~~~~~d~~~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~af~~i~L~pRvL~dv~~~dtst~l~G~~~s~Pi~iaP~g~ 112 (203)
.+++|++|||+.||++||+.+|+|++||++||.|+++|+.+|++|+|+||+|+|++++||+|+|||++++.||+|||||+
T Consensus 3 ~~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~f~~i~l~pr~L~~~~~~d~st~i~G~~l~~Pv~iap~~~ 82 (380)
T 1p4c_A 3 QNLFNVEDYRKLAQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQAEVLGKRQSMPLLIGPTGL 82 (380)
T ss_dssp -CCSSHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGEEECCCCSCCCSSCBCCEEETTEEESSSEEECCCSC
T ss_pred CcCCCHHHHHHHHHHhCCHHHHHHhCCCCCccHHHHHHHHHHhheeeeccccCCCccCcceeEECCeecCCceEecCccc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHhhcCCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCCC
Q 028827 113 HKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPR 192 (203)
Q Consensus 113 ~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~~~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p~ 192 (203)
++++||++|.++|++|+++|+++++|+++++++|+|+++.+++.|||||+++ ++.+.++++||+++||++++||||+|+
T Consensus 83 ~~~~~~~~~~~~a~aa~~~G~~~~vss~s~~~le~i~~~~~~~~~fQly~~~-~~~~~~~i~~a~~aG~~al~vTvd~p~ 161 (380)
T 1p4c_A 83 NGALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCDGDLWFQLYVIH-REIAQGMVLKALHTGYTTLVLTTDVAV 161 (380)
T ss_dssp GGGTSTTHHHHHHHHHHHHTCCEEECTTCSSCHHHHHHHCCSCEEEEECCSS-HHHHHHHHHHHHHTTCCEEEEECSCSS
T ss_pred cccCCCcHHHHHHHHHHHcCCCeecCccccCCHHHHHhccCCCeEEEEEech-HHHHHHHHHHHHHcCCCEEEEeecCcc
Confidence 9999999999999999999999999999999999999876688999999999 999999999999999999999999999
Q ss_pred CCCchhhhhcC
Q 028827 193 LGRREADIKNK 203 (203)
Q Consensus 193 ~g~Re~d~r~~ 203 (203)
.|+|++|+|+|
T Consensus 162 ~g~r~~d~~~g 172 (380)
T 1p4c_A 162 NGYRERDLHNR 172 (380)
T ss_dssp CCCCHHHHHHT
T ss_pred ccchhHHHhcC
Confidence 99999999975
No 5
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=100.00 E-value=2.8e-46 Score=336.53 Aligned_cols=170 Identities=63% Similarity=0.983 Sum_probs=166.2
Q ss_pred CCCCHHHHHHHHHHhCChhhhhhhcCCccchhhHHHHHHHhhccccccccccCCCCCCcceeecCcccCcceEeccccch
Q 028827 34 EPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALH 113 (203)
Q Consensus 34 ~~~~~~d~~~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~af~~i~L~pRvL~dv~~~dtst~l~G~~~s~Pi~iaP~g~~ 113 (203)
.++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|+|||+++++||+|||||++
T Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~l~~~~~~d~~t~i~G~~~~~Pi~iAPmg~~ 82 (370)
T 1gox_A 3 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMTTTILGFKISMPIMIAPTAMQ 82 (370)
T ss_dssp CCCSTTHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGEEECCCCSCCCSCCBCCEEETTEEESSSEEECCCSCG
T ss_pred cCCCHHHHHHHHHHhCCHHHHhhhCCCCCccHHHHHHHHHHhhheeeccccCCCCCCCCceEECCcccCCceeEcccchh
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHhhcCCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 028827 114 KLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRL 193 (203)
Q Consensus 114 ~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~~~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p~~ 193 (203)
.+.||+||.+++++|+++|++|++|++++.++|||+++.+++.|||||+++|++.+.+++++++++|+++|+||+|+|+.
T Consensus 83 ~l~~~~~e~a~a~aa~~~G~~~~~s~~~~~~ieev~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~it~d~p~~ 162 (370)
T 1gox_A 83 KMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (370)
T ss_dssp GGTCTTHHHHHHHHHHHTTCCEEECTTCSSCHHHHHTTCCCCEEEEECCBSSHHHHHHHHHHHHHTTCCEEEEECSCSSC
T ss_pred hhccchHHHHHHHHHHHcCCCeeccCCCCCCHHHHHhhcCCCceEEEecCCCchHHHHHHHHHHHCCCCEEEEeCCCCcc
Confidence 99999999999999999999999999999999999988788999999999999999999999999999999999999999
Q ss_pred CCchhhhhcC
Q 028827 194 GRREADIKNK 203 (203)
Q Consensus 194 g~Re~d~r~~ 203 (203)
|+|++|+|++
T Consensus 163 g~r~~d~r~~ 172 (370)
T 1gox_A 163 GRREADIKNR 172 (370)
T ss_dssp CCCHHHHHTT
T ss_pred cccHHHHHhc
Confidence 9999999975
No 6
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=100.00 E-value=8.4e-46 Score=346.13 Aligned_cols=178 Identities=40% Similarity=0.649 Sum_probs=170.2
Q ss_pred hcccCCCCCCCCCCCHHHHHHHHHHhCChhhhhhhcCCccchhhHHHHHHHhhccccccccccCCCCCCcceeecCcccC
Q 028827 23 NVHVCRFQMAAEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKIS 102 (203)
Q Consensus 23 ~~~~~~~~~~~~~~~~~d~~~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~af~~i~L~pRvL~dv~~~dtst~l~G~~~s 102 (203)
.++.|++. .++|++|||+.||++||+.+|+|+.||++||.|+++|+++|++|+|+||+|+|++++||+|+|||++++
T Consensus 113 ~~~~p~~~---~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~e~t~~~N~~af~~i~l~pr~L~dv~~~d~st~i~G~~l~ 189 (511)
T 1kbi_A 113 KSLLPPLD---NIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTDMLGSHVD 189 (511)
T ss_dssp HHTCCCGG---GCCSHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGCEECCCCSCCCSSCBCCEEETTEEES
T ss_pred cCCCCCcc---ccCCHHHHHHHHHhhCCHHHhhhccCCCCchhHHHHHHHHhhhhccccccccCcccccCccccCCccCC
Confidence 36777654 678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEeccccchhccCc-hHHHHHHHHHHh--cCCeEEecCCCCCCHHHHHhhc---CCceeEEEeeeCCHHHHHHHHHHH
Q 028827 103 APIIIAPTALHKLANP-EGEVATARAAAS--CNTIMVLSFTSSSSIEEVAASC---NAVRFYQLYVFKKRDIAATLVQRA 176 (203)
Q Consensus 103 ~Pi~iaP~g~~~l~hp-~gE~a~AraA~~--~gi~~~lss~ss~sleeia~~~---~~~~w~Qly~~~d~~~~~~ll~rA 176 (203)
+||+||||++++++|| +||.++|++|++ +|++|++|++++.++|+|++.. +++.|||||+.+|++.+.++++||
T Consensus 190 ~Pi~iAPma~~~l~~~~~~e~alaraA~~~~~G~~~~~s~~a~~s~e~v~~~~~~~~~~~~~QLy~~~d~~~~~~~~~ra 269 (511)
T 1kbi_A 190 VPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNV 269 (511)
T ss_dssp SSEEECCCSCGGGTCTTTTHHHHHHHHHSSSSCCCEEECTTCSSCHHHHHHTCCCSSCCEEEEECCCSSHHHHHHHHHHH
T ss_pred CCeEeccchhccccChhhHHHHHHHHHHHhCCCeeEEeCCcccCCHHHHHhhcCCCCCCeEEEEeecCCHHHHHHHHHHH
Confidence 9999999999999999 999999999999 9999999999999999999876 368999999999999999999999
Q ss_pred HHcCCcEEEEeecCCCCCCchhhhhcC
Q 028827 177 ERNGFKALVLTADTPRLGRREADIKNK 203 (203)
Q Consensus 177 e~aG~~AlvvTVD~p~~g~Re~d~r~~ 203 (203)
+++||++|+||||+|+.|+|++++|+|
T Consensus 270 e~aG~~al~itvd~p~~g~R~~~~r~g 296 (511)
T 1kbi_A 270 EKLGVKALFVTVDAPSLGQREKDMKLK 296 (511)
T ss_dssp HHHTCSCEEEECSCSSCCCCHHHHHHH
T ss_pred HHcCCCEEEEeCCCCCccccHHHHhcc
Confidence 999999999999999999999999874
No 7
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}
Probab=99.82 E-value=2.4e-22 Score=181.14 Aligned_cols=131 Identities=15% Similarity=0.152 Sum_probs=115.2
Q ss_pred HHhCChhhhhhhcCCccchhhHHHHHHHhhccccccc-cccCCCCCCcceeecCcccCcceEeccccchhccCchHHHHH
Q 028827 46 RLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPR-ILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVAT 124 (203)
Q Consensus 46 r~~Lp~~~~~Y~~gGa~de~T~~~N~~af~~i~L~pR-vL~dv~~~dtst~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~ 124 (203)
..+||+..|+|+.+|++++ ++|..+|++|+|+|| ++++++++|++|+|||.+++.||++|||+ ++.|| .+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~---~~~~~~fd~v~l~p~~~~~~~~~vdlst~l~g~~l~~Pii~Apm~--g~~~~----~~ 83 (393)
T 2qr6_A 13 ENLYFQGMRDHVEIGIGRE---ARRTYSLDDISVVSSRRTRSSKDVDTTWHIDAYKFDLPFMNHPSD--ALASP----EF 83 (393)
T ss_dssp -CHHHHHHHHEEEEETTEE---EECCCCGGGEEECCCSCCCCGGGCBCCEEETTEEESSSEEECCCT--TTCCH----HH
T ss_pred ccccccchHHHHhcccccc---cccCCChhhEEEccCCCCCChhHCCceeEEcccccCCCeEeCCCC--CcccH----HH
Confidence 3578999999999999999 469999999999998 99999999999999999999999999998 56676 59
Q ss_pred HHHHHhcCCeEEecC--------CCCCCHHHHHhhcC-------CceeEEEeeeC-CHHHHHHHHHHHHHcCCcEEE
Q 028827 125 ARAAASCNTIMVLSF--------TSSSSIEEVAASCN-------AVRFYQLYVFK-KRDIAATLVQRAERNGFKALV 185 (203)
Q Consensus 125 AraA~~~gi~~~lss--------~ss~sleeia~~~~-------~~~w~Qly~~~-d~~~~~~ll~rAe~aG~~Alv 185 (203)
|++++++|.++++++ .++.++|+|++... ...|||+|+.+ |++.+.+++++++++|+.+++
T Consensus 84 a~a~a~~G~~gvl~~~~~~~~~~~~~~~~eeia~~~~~~d~~~g~~~~~q~~~~~~d~~~~~~~i~~~~~~g~~v~~ 160 (393)
T 2qr6_A 84 VIEMGKQGGLGVINAEGLWGRHADLDEAIAKVIAAYEEGDQAAATRTLQELHAAPLDTELLSERIAQVRDSGEIVAV 160 (393)
T ss_dssp HHHHHHTTSBCEEETTSSTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSCCEE
T ss_pred HHHHHHcCCcEEEEecceecccCCchhHHHHHHHHHHhcCCCccchhhhhcccccCCHHHHHHHHHHHhhcCCeEEE
Confidence 999999999999998 55567888887643 46799999765 999999999999999988776
No 8
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*
Probab=99.73 E-value=3.2e-19 Score=157.60 Aligned_cols=126 Identities=22% Similarity=0.304 Sum_probs=86.7
Q ss_pred hhhhcCCccchhhHHHHHHHhhcccccccccc--CCCCCCcceeecCcccCcceEeccccchhccCchHH---HHHHHHH
Q 028827 54 YDFYAGGAEDEHTLKENVEAFHRITFRPRILV--DVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGE---VATARAA 128 (203)
Q Consensus 54 ~~Y~~gGa~de~T~~~N~~af~~i~L~pRvL~--dv~~~dtst~l~G~~~s~Pi~iaP~g~~~l~hp~gE---~a~AraA 128 (203)
.+|+..+.+++.|+++|+.+|++|+|+||+|+ +++++||+|+|||++++.||+||||++ .|+.+| .+++++|
T Consensus 8 ~~hi~~~~~~~~~~~~~~~~f~~~~l~p~~l~~~~~~~~d~~~~i~g~~l~~P~~iapm~g---~~~~~~~~~~~la~~a 84 (332)
T 1vcf_A 8 RKHLEACLEGEVAYQKTTTGLEGFRLRYQALAGLALSEVDLTTPFLGKTLKAPFLIGAMTG---GEENGERINLALAEAA 84 (332)
T ss_dssp ---------------CCCCSGGGEEECCCTTCCCCGGGCCCCEEETTEEESSSEEECCCC------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcccccchhhhhhcEEehhhCCCCCCCCCCcceEECCcccCCceEEecccc---CCcchhHHHHHHHHHH
Confidence 48999999999999999999999999999999 889999999999999999999999875 266665 8999999
Q ss_pred HhcCCeEEecCCCCCCHHHHHhhcCCceeEEEeeeCCHH-------------H----HHHHHHHHHHcCCcEEEEeecC
Q 028827 129 ASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRD-------------I----AATLVQRAERNGFKALVLTADT 190 (203)
Q Consensus 129 ~~~gi~~~lss~ss~sleeia~~~~~~~w~Qly~~~d~~-------------~----~~~ll~rAe~aG~~AlvvTVD~ 190 (203)
++.|++|++|++++. +|+. ....|||+ ++++ + .....+.++.+|++++.++++.
T Consensus 85 ~~~G~~~~~~~~~~~-le~~----~~~~~~ql---~~~~~d~pv~~~~~~~q~~~~~~~~~~~a~~~~~~~a~~i~~n~ 155 (332)
T 1vcf_A 85 EALGVGMMLGSGRIL-LERP----EALRSFRV---RKVAPKALLIANLGLAQLRRYGRDDLLRLVEMLEADALAFHVNP 155 (332)
T ss_dssp HHHTCEEEEEECHHH-HHCT----TTHHHHCC---TTTCSSSCEEEEEEGGGGGTCCHHHHHHHHHHHTCSEEEEECCH
T ss_pred HHcCCCEEeCCchhc-ccCC----CccceEEe---eccCCCceeecccChhhhhccChHHHHHHHhhcCCCceeeccch
Confidence 999999999999875 6642 34457775 2210 0 1333344456789999999874
No 9
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=99.59 E-value=1.4e-15 Score=136.66 Aligned_cols=111 Identities=14% Similarity=0.091 Sum_probs=98.7
Q ss_pred HHhhccccccccccCCC--CCC--cceeecCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHH
Q 028827 72 EAFHRITFRPRILVDVS--RID--LSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEE 147 (203)
Q Consensus 72 ~af~~i~L~pRvL~dv~--~~d--tst~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~slee 147 (203)
.+|++|.|+||++++++ ++| ++|+|+|.+++.||++||| |+.+|..+|++++++|.+.++++. .++|+
T Consensus 8 ~~fddv~l~P~~~~~~~r~~vd~~~~t~l~g~~l~~Pii~ApM------~~vte~~lA~A~a~~Gg~gvi~~~--~s~ee 79 (361)
T 3r2g_A 8 ITFDDVLLVPSYNHHESRRVVETTSTDRLGKLTLNLPVISANM------DTITESNMANFMHSKGAMGALHRF--MTIEE 79 (361)
T ss_dssp CCGGGEEECCCCCCSCTTCCCCCCEECTTSSCEESSCEEECCS------TTTCSHHHHHHHHHTTCEEBCCSC--SCHHH
T ss_pred cccceEEEECCCCCCCccccccceeeEEECCEEcCCCEEECCC------CCchHHHHHHHHHHcCCCEEEeCC--CCHHH
Confidence 36999999999999987 765 5559999999999999996 678999999999999999999965 78999
Q ss_pred HHhhcCCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCCC
Q 028827 148 VAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPR 192 (203)
Q Consensus 148 ia~~~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p~ 192 (203)
+++.....+|+|.|...+++...++++++.++|++ +|+||++.
T Consensus 80 ~~~~i~~~~~~~~~~~g~~~~~~e~~~~a~~aGvd--vI~id~a~ 122 (361)
T 3r2g_A 80 NIQEFKKCKGPVFVSVGCTENELQRAEALRDAGAD--FFCVDVAH 122 (361)
T ss_dssp HHHHHHTCCSCCBEEECSSHHHHHHHHHHHHTTCC--EEEEECSC
T ss_pred HHHHHhhcceEEEEEcCCCHHHHHHHHHHHHcCCC--EEEEeCCC
Confidence 99988777899999999999999999999999999 56777655
No 10
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=99.58 E-value=2.7e-15 Score=135.00 Aligned_cols=115 Identities=19% Similarity=0.154 Sum_probs=79.9
Q ss_pred HHhhcccccccccc--CCCCCCcceeecCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHH--
Q 028827 72 EAFHRITFRPRILV--DVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEE-- 147 (203)
Q Consensus 72 ~af~~i~L~pRvL~--dv~~~dtst~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~slee-- 147 (203)
..|++|+|+|+.|+ |++++||+|+|||+++++||+|+||++....+++++.++|++|+++|++|++|+++.. +|+
T Consensus 54 ~~fd~i~l~~~~lP~~~~~~vd~st~i~g~~l~~Pi~iapMtgg~~~~~~in~~lA~~a~~~G~~~~vGs~~~~-le~~~ 132 (365)
T 3sr7_A 54 NSFDDIELIHHSLPDYDLAEIDLSTHFAGQDFDFPFYINAMTGGSQKGKEVNEKLAQVADTCGLLFVTGSYSTA-LKNPD 132 (365)
T ss_dssp CGGGGEEECCCSSCCSCGGGCCCCEEETTEEESSSEEEECC----CCCHHHHHHHHHHHHHHTCCEEC------------
T ss_pred CCcceEEEECCCCCcCCcccccceEEECCEEccCceEeccccCCCcchhHHHHHHHHHHHHcCCCeeccccccc-ccCcc
Confidence 58999999999995 7799999999999999999999999888888999999999999999999999998852 343
Q ss_pred -----HHhhcC-CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecC
Q 028827 148 -----VAASCN-AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADT 190 (203)
Q Consensus 148 -----ia~~~~-~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~ 190 (203)
|.+..| .+.+--|-.... .++..+.++.+|++||.+++|.
T Consensus 133 ~~~~~v~r~~P~~~~ianig~~~~---~e~~~~~ve~~~adal~ihln~ 178 (365)
T 3sr7_A 133 DTSYQVKKSRPHLLLATNIGLDKP---YQAGLQAVRDLQPLFLQVHINL 178 (365)
T ss_dssp ------------CCEEEEEETTSC---HHHHHHHHHHHCCSCEEEEECH
T ss_pred ccceEehhhCCCCcEEEEeCCCCC---HHHHHHHHHhcCCCEEEEeccc
Confidence 222223 233333322212 2345566668999999999996
No 11
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=99.57 E-value=3.6e-15 Score=132.18 Aligned_cols=118 Identities=22% Similarity=0.191 Sum_probs=94.2
Q ss_pred HHHhhcccccccccc--CCCCCCcceeecCcccCcceEeccc-cchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHH
Q 028827 71 VEAFHRITFRPRILV--DVSRIDLSTTILDYKISAPIIIAPT-ALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEE 147 (203)
Q Consensus 71 ~~af~~i~L~pRvL~--dv~~~dtst~l~G~~~s~Pi~iaP~-g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~slee 147 (203)
..+|++|+|+||+|+ |++++|++|+|||++++.||++||| |+++..+++++.+++++|++.|++|++|++++. +|+
T Consensus 22 ~~~f~~~~l~p~~l~~~~~~~~d~~~~i~g~~~~~P~~iApm~g~~~~~~~~~~~~~a~aa~~~G~~~~~~~~~~~-l~~ 100 (349)
T 1p0k_A 22 ETGLDDITFVHVSLPDLALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQMSA-LKD 100 (349)
T ss_dssp CCSGGGEEECCCSCCCCCGGGCBCCEEETTEEESCSEEEECCCCSCHHHHHHHHHHHHHHHHHHTCCEECCCCTTT-TTC
T ss_pred cCccceEEEEccccCCCCcccCCceeEECCcccCCceEEcCccccchhhhhHHHHHHHHHHHHcCCcEEeccchhc-ccC
Confidence 668999999999999 7799999999999999999999997 666334578899999999999999999998764 443
Q ss_pred H---------Hhhc-CCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCCC
Q 028827 148 V---------AASC-NAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPR 192 (203)
Q Consensus 148 i---------a~~~-~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p~ 192 (203)
+ .+.. ..+.+.|+....+.+... +.++.+|+++|.+++++|.
T Consensus 101 ~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~~~~---~~~~~~gad~i~i~~~~~~ 152 (349)
T 1p0k_A 101 PSERLSYEIVRKENPNGLIFANLGSEATAAQAK---EAVEMIGANALQIHLNVIQ 152 (349)
T ss_dssp HHHHHHHHHHHHHCSSSCEEEEEETTCCHHHHH---HHHHHTTCSEEEEEECTTT
T ss_pred cccccceehhhhhCCCceeEEeecCCCCHHHHH---HHHHhcCCCeEEecccchh
Confidence 2 3233 357777886544544433 4456789999999999874
No 12
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Probab=99.36 E-value=9.6e-13 Score=118.40 Aligned_cols=116 Identities=11% Similarity=0.011 Sum_probs=85.0
Q ss_pred HHhhcccccccccc--CCCCCCcceeecCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCCC------
Q 028827 72 EAFHRITFRPRILV--DVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSS------ 143 (203)
Q Consensus 72 ~af~~i~L~pRvL~--dv~~~dtst~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~------ 143 (203)
+.|++|+|.|+.|+ +++++||+|+|||++++.||+|+||++......+.+..+|++|+++|++|++|++...
T Consensus 27 ~~~~~v~l~~~~lp~~~~~~vd~st~~~g~~l~~Pv~ia~MtGgt~~~~~in~~la~~a~~~G~~~~vGs~~~~l~~~~~ 106 (368)
T 3vkj_A 27 TFLNDVILVHQGFPGISFSEINTKTKFFRKEISVPVMVTGMTGGRNELGRINKIIAEVAEKFGIPMGVGSQRVAIEKAEA 106 (368)
T ss_dssp CSGGGEEECCCSSCBSBGGGCBCCEEETTEEESSSEEECCCCCSSHHHHHHHHHHHHHHHHHTCCEECCCCHHHHHCGGG
T ss_pred CCcceEEEEcCCCCccCcccccceeEECCEeccCCeEEecCCCCCchhhHHHHHHHHHHHHhCCCeeeecchhccCCHHH
Confidence 57999999999999 7899999999999999999999998554333346789999999999999999999421
Q ss_pred --CHHHHHhhcC-CceeEEEee----e-CCHHHHHHHHHHHHHcCCcEEEEeecC
Q 028827 144 --SIEEVAASCN-AVRFYQLYV----F-KKRDIAATLVQRAERNGFKALVLTADT 190 (203)
Q Consensus 144 --sleeia~~~~-~~~w~Qly~----~-~d~~~~~~ll~rAe~aG~~AlvvTVD~ 190 (203)
+.+-+.+.+| .+.+-.+.. . .+.+...+. ++.+++.|+.|+++.
T Consensus 107 ~~s~~~vr~~ap~~~~~anlg~~ql~~~~~~~~~~~a---v~~~~a~al~Ihln~ 158 (368)
T 3vkj_A 107 RESFAIVRKVAPTIPIIANLGMPQLVKGYGLKEFQDA---IQMIEADAIAVHLNP 158 (368)
T ss_dssp SHHHHHHHHHCSSSCEEEEEEGGGGGTTCCHHHHHHH---HHHTTCSEEEEECCH
T ss_pred HhhHHHHHHhCcCcceecCcCeeecCCCCCHHHHHHH---HHHhcCCCeEEEecc
Confidence 2222454555 344444444 2 333333333 334688999999863
No 13
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=99.22 E-value=1.7e-12 Score=114.90 Aligned_cols=115 Identities=17% Similarity=0.136 Sum_probs=72.4
Q ss_pred hhHHHHHHHhhcccccccc--ccCCCCCCcceeecCcccCcceEeccccchhccCchHHHHHHHH-HHhcCCeEEecCCC
Q 028827 65 HTLKENVEAFHRITFRPRI--LVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARA-AASCNTIMVLSFTS 141 (203)
Q Consensus 65 ~T~~~N~~af~~i~L~pRv--L~dv~~~dtst~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~Ara-A~~~gi~~~lss~s 141 (203)
+-..+|..+|++|+|+||+ +++++++|++|+|+|.+++.||++|||++.. + ..+|++ ++..|+.+......
T Consensus 7 ~~~~~~~~~fd~v~l~p~~~~~~~~~~vdl~t~i~g~~l~~Pi~~a~mag~s----~--~~la~a~~~~gg~g~~~~~~~ 80 (336)
T 1ypf_A 7 HHHMGNVFDYEDIQLIPAKCIVNSRSECDTTVTLGKHKFKLPVVPANMQTII----D--ERIATYLAENNYFYIMHRFQP 80 (336)
T ss_dssp -----CCCCGGGEEECCCCCCCSSGGGCBCCEEETTEEESSSEEECSSTTTC----C--HHHHHHHHHTTCCCCCCCSSG
T ss_pred cccccccCCcceEEEecccCCCCCcccCcceEEECCEEecCcEEECCCCCCC----h--HHHHHHHHhCCCEEEecCCCC
Confidence 4456899999999999999 6789999999999999999999999987542 2 334444 44455555554433
Q ss_pred CCCHHHHHhhc-CC-ceeEEEeeeCCHHHHHHHHHHHHHcC--CcEEEEee
Q 028827 142 SSSIEEVAASC-NA-VRFYQLYVFKKRDIAATLVQRAERNG--FKALVLTA 188 (203)
Q Consensus 142 s~sleeia~~~-~~-~~w~Qly~~~d~~~~~~ll~rAe~aG--~~AlvvTV 188 (203)
+...+.|.+.. .+ +.-.| +..+.+ ..+.++++.++| +.+|.++.
T Consensus 81 ~~~~~~i~~~~~~g~~v~v~--~g~~~~-~~~~a~~~~~~g~~~~~i~i~~ 128 (336)
T 1ypf_A 81 EKRISFIRDMQSRGLIASIS--VGVKED-EYEFVQQLAAEHLTPEYITIDI 128 (336)
T ss_dssp GGHHHHHHHHHHTTCCCEEE--ECCSHH-HHHHHHHHHHTTCCCSEEEEEC
T ss_pred HHHHHHHHHHHhcCCeEEEe--CCCCHH-HHHHHHHHHhcCCCCCEEEEEC
Confidence 22222233322 23 33344 233233 345677888888 77776654
No 14
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=99.05 E-value=1.3e-10 Score=104.78 Aligned_cols=73 Identities=21% Similarity=0.265 Sum_probs=59.8
Q ss_pred HHhhcccccccccc-CCCCCCcceeec-CcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHH
Q 028827 72 EAFHRITFRPRILV-DVSRIDLSTTIL-DYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVA 149 (203)
Q Consensus 72 ~af~~i~L~pRvL~-dv~~~dtst~l~-G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia 149 (203)
.+|++|.|+|+++. +++++|++|+|+ |.+++.||++|||++ ++++|.+.+ +.++|...+++ ++.++|++.
T Consensus 10 ~~fd~v~l~p~~~~~~~~~vdlst~l~~g~~l~~Pii~Apm~~----~~~~ela~a--~a~aGglg~i~--~~~s~e~~~ 81 (404)
T 1eep_A 10 LTFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDT----VTESQMAIA--IAKEGGIGIIH--KNMSIEAQR 81 (404)
T ss_dssp CCGGGEEECCCCCCSCGGGCCCCEESSSSCEESSSEEECCCTT----TCSHHHHHH--HHHHTSEEEEC--SSSCHHHHH
T ss_pred CCcccEEEccCCCCcCccccccceeccCCcccCCCEEeCCCCC----CCCHHHHHH--HHHCCCEEEEC--CCCCHHHHH
Confidence 46999999999998 789999999999 999999999999986 567777766 55666666665 466888877
Q ss_pred hhc
Q 028827 150 ASC 152 (203)
Q Consensus 150 ~~~ 152 (203)
+..
T Consensus 82 ~~~ 84 (404)
T 1eep_A 82 KEI 84 (404)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 15
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=98.99 E-value=5.6e-10 Score=99.63 Aligned_cols=115 Identities=14% Similarity=0.124 Sum_probs=80.0
Q ss_pred hHHHHHHHhhcccccccccc-CC-CCCCcceeec-----CcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEec
Q 028827 66 TLKENVEAFHRITFRPRILV-DV-SRIDLSTTIL-----DYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLS 138 (203)
Q Consensus 66 T~~~N~~af~~i~L~pRvL~-dv-~~~dtst~l~-----G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~ls 138 (203)
-+++|..+|++|.|+|+.+. ++ +++||+|+|+ |.+++.||++|||++ .++.++|++++++|...+++
T Consensus 14 ~~~~~~~~fddv~l~p~~~~~~~~~~vdl~t~l~~~~~~~~~l~~PIi~ApM~~------~~~~~lA~Ava~~Gglg~i~ 87 (351)
T 2c6q_A 14 LVPRGSLDFKDVLLRPKRSTLKSRSEVDLTRSFSFRNSKQTYSGVPIIAANMDT------VGTFEMAKVLCKFSLFTAVH 87 (351)
T ss_dssp -----CCCGGGEEECCCCBCCCCGGGCBCCEEEECTTTCCEEEECCEEECSSTT------TSCHHHHHHHHHTTCEEECC
T ss_pred ccccCCCCcceEEEECCCCCCCccccceeEEEeccccCcCccccCCEEECCCCC------CCcHHHHHHHHHCCCEEEEc
Confidence 35789999999999999987 68 7999999999 999999999999874 35688999999999888887
Q ss_pred CCCCCCHHHHHhhcC-CceeE-EEee--eCCHHHHHHHHHHHHHc--CCcEEEEeec
Q 028827 139 FTSSSSIEEVAASCN-AVRFY-QLYV--FKKRDIAATLVQRAERN--GFKALVLTAD 189 (203)
Q Consensus 139 s~ss~sleeia~~~~-~~~w~-Qly~--~~d~~~~~~ll~rAe~a--G~~AlvvTVD 189 (203)
. +.++|++.+... .+.++ .+.. ....+. .+.++...+. |+++|.+++.
T Consensus 88 ~--~~s~e~~~~~i~~~p~~l~~v~~~~g~~~~~-~~~~~~l~~~~~g~~~i~i~~~ 141 (351)
T 2c6q_A 88 K--HYSLVQWQEFAGQNPDCLEHLAASSGTGSSD-FEQLEQILEAIPQVKYICLDVA 141 (351)
T ss_dssp T--TCCHHHHHHHHHHCGGGCTTEEEEECSSHHH-HHHHHHHHHHCTTCCEEEEECS
T ss_pred C--CCCHHHHHHHHhhCchhhheeEeecCCChHH-HHHHHHHHhccCCCCEEEEEec
Confidence 5 568888766531 22121 1111 112222 2445555555 8998887653
No 16
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=98.17 E-value=7.4e-06 Score=81.62 Aligned_cols=108 Identities=20% Similarity=0.206 Sum_probs=81.5
Q ss_pred ccccccCCCCCCcceeecCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEe-cCCC-----------------
Q 028827 80 RPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVL-SFTS----------------- 141 (203)
Q Consensus 80 ~pRvL~dv~~~dtst~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~l-ss~s----------------- 141 (203)
.|.....+.++|++++++|.+++.||++||+++. .+...++++...|..+++ +|.+
T Consensus 521 ~p~~~~ev~~v~ls~~~~G~~~~nPv~lAa~~~~------~~~~~~~~~~~~g~G~vv~~t~~~~~~~~gn~~pr~~~~~ 594 (1025)
T 1gte_A 521 LPLFYTPVDLVDISVEMAGLKFINPFGLASAAPT------TSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGT 594 (1025)
T ss_dssp BCCCCCGGGGCCCCEEETTEEESSSEEECSSGGG------SSHHHHHHHHHHTCSEEECCCBCCGGGCCCCCSSCEEECC
T ss_pred ccccccccccccceeeeccccccCcccccCCCCC------CCHHHHHHHHHCCcCeEEeceecccccccCCCCccEEecc
Confidence 3444446678999999999999999999997653 234456677777888876 2111
Q ss_pred --------------------CCC-------HHHHHhhcC-CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 028827 142 --------------------SSS-------IEEVAASCN-AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRL 193 (203)
Q Consensus 142 --------------------s~s-------leeia~~~~-~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p~~ 193 (203)
+.+ ++++.+..+ .+.|++++...+.+...+.+++++++|+++|.|++.+|..
T Consensus 595 ~~g~~~~~~~~~~~n~e~~~~~~~~~~~~~i~~~~~~~~~~~~i~~i~~g~~~~~~~~~a~~~~~~g~d~iein~~~P~~ 674 (1025)
T 1gte_A 595 TSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHG 674 (1025)
T ss_dssp TTCSCCSSCCSCEEECCCSCSSCHHHHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCC
T ss_pred ccccccCCchhheeeeccccchhHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence 011 234455454 6889999888899999999999999999999999999875
No 17
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=97.70 E-value=0.00018 Score=64.29 Aligned_cols=100 Identities=16% Similarity=0.154 Sum_probs=66.3
Q ss_pred HhhccccccccccCC--CCCCcceeec-CcccCcceEeccccchhccCchHHHHHHHH-HHhcCCeEEecCCCCCCHHHH
Q 028827 73 AFHRITFRPRILVDV--SRIDLSTTIL-DYKISAPIIIAPTALHKLANPEGEVATARA-AASCNTIMVLSFTSSSSIEEV 148 (203)
Q Consensus 73 af~~i~L~pRvL~dv--~~~dtst~l~-G~~~s~Pi~iaP~g~~~l~hp~gE~a~Ara-A~~~gi~~~lss~ss~sleei 148 (203)
.|++|.|+|+ ++++ +++|++|+|. +..+..||+.+||.... +..+|.+ |.+-|+.++-. +.++++.
T Consensus 14 ~fddv~l~p~-~~~~~~~~vdl~t~l~~~~~l~~Pii~apM~~vt------~~~lA~avA~~GGlgii~~---~~s~e~~ 83 (361)
T 3khj_A 14 TFEDILLVPN-YSEVLPREVSLETKLTKNVSLKIPLISSAMDTVT------EHLMAVGMARLGGIGIIHK---NMDMESQ 83 (361)
T ss_dssp CGGGEEECCC-CBCCCGGGCCCCEESSSSCEESSSEEECSSTTTC------SHHHHHHHHHTTCEEEECS---SSCHHHH
T ss_pred CcceEEEECC-CCCCCHHHccCceecccccccCCCEEeecCCCCC------cHHHHHHHHHcCCCeEEec---CCCHHHH
Confidence 5999999998 6765 5689999998 78999999999986431 2356664 44556656554 3445544
Q ss_pred H----hhc--C-CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 028827 149 A----ASC--N-AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 149 a----~~~--~-~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
. +.. + .+....+... + .+.++.+.++|++.|+|+
T Consensus 84 ~~~I~~vk~~~~~pvga~ig~~-~----~e~a~~l~eaGad~I~ld 124 (361)
T 3khj_A 84 VNEVLKVKNSGGLRVGAAIGVN-E----IERAKLLVEAGVDVIVLD 124 (361)
T ss_dssp HHHHHHHHHTTCCCCEEEECTT-C----HHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHhccCceEEEEeCCC-H----HHHHHHHHHcCcCeEEEe
Confidence 3 221 2 2333444332 2 678888889999976554
No 18
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=97.48 E-value=6.9e-05 Score=65.43 Aligned_cols=42 Identities=14% Similarity=0.160 Sum_probs=33.9
Q ss_pred CCCcceeecCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEe
Q 028827 89 RIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVL 137 (203)
Q Consensus 89 ~~dtst~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~l 137 (203)
.+|++++++|.+++.||++|+ |. +++++ ..+++++.|+.+++
T Consensus 42 ~~~l~~~i~g~~l~npi~~aa-g~----~~~~~--~~~~~a~~G~g~i~ 83 (336)
T 1f76_A 42 VPAKPVNCMGLTFKNPLGLAA-GL----DKDGE--CIDALGAMGFGSIE 83 (336)
T ss_dssp CCCCCEEETTEEESSSEEECT-TS----STTCC--CHHHHHHTTCSEEE
T ss_pred CCCCCeEECCEEcCCCcEeCc-cc----CCcHH--HHHHHHHcCccEEE
Confidence 489999999999999999995 32 45565 67778889998754
No 19
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=97.06 E-value=0.0022 Score=57.38 Aligned_cols=106 Identities=21% Similarity=0.158 Sum_probs=65.1
Q ss_pred HhhccccccccccCC--CCCCcceeec-CcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHH
Q 028827 73 AFHRITFRPRILVDV--SRIDLSTTIL-DYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVA 149 (203)
Q Consensus 73 af~~i~L~pRvL~dv--~~~dtst~l~-G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia 149 (203)
.|+++.|+|. +.++ +++|++|.|. +..+..||+.+||... .+..+|.+.+++|-.-++.. +.+.|+..
T Consensus 15 ~fddv~lvp~-~~~~~~~~vdl~t~lt~~~~l~~Pii~apM~~v------s~~~lA~avA~aGGlg~i~~--~~s~e~~~ 85 (366)
T 4fo4_A 15 TFDDVLLVPA-HSTVLPNTADLRTRLTKNIALNIPMVSASMDTV------TEARLAIALAQEGGIGFIHK--NMSIEQQA 85 (366)
T ss_dssp CGGGEEECCC-CCCCCGGGCBCCEEEETTEEESSSEEECCCTTT------CSHHHHHHHHHTTCEEEECS--SSCHHHHH
T ss_pred CcceEEEECC-CCCCChhhcccceecccccccCCCEEeCCCCCC------ChHHHHHHHHHcCCceEeec--CCCHHHHH
Confidence 4899999997 5554 5689999997 6889999999998643 12356655555544444432 34555543
Q ss_pred hhc----C-CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEee
Q 028827 150 ASC----N-AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTA 188 (203)
Q Consensus 150 ~~~----~-~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTV 188 (203)
+.. . ++.-..+-... .....+.++.+.++|++.|+|+.
T Consensus 86 ~~i~~vk~~~~l~vga~vg~-~~~~~~~~~~lieaGvd~I~idt 128 (366)
T 4fo4_A 86 AQVHQVKISGGLRVGAAVGA-APGNEERVKALVEAGVDVLLIDS 128 (366)
T ss_dssp HHHHHHHTTTSCCCEEECCS-CTTCHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHhcCceeEEEEecc-ChhHHHHHHHHHhCCCCEEEEeC
Confidence 321 1 11112222211 12345678888899999877653
No 20
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=96.98 E-value=0.0034 Score=53.91 Aligned_cols=97 Identities=14% Similarity=0.140 Sum_probs=67.6
Q ss_pred CCcceeecCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEec-CCC--------------------------C
Q 028827 90 IDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLS-FTS--------------------------S 142 (203)
Q Consensus 90 ~dtst~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~ls-s~s--------------------------s 142 (203)
+|++++++|.+++.||++||.. .+.+++. .+.+.+.|+.+++. +.+ +
T Consensus 2 ~dl~~~i~g~~l~nPi~~Aag~----~~~~~~~--~~~~~~~G~g~v~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~ 75 (314)
T 2e6f_A 2 MCLKLNLLDHVFANPFMNAAGV----LCSTEED--LRCMTASSSGALVSKSCTSAPRDGNPEPRYMAFPLGSINSMGLPN 75 (314)
T ss_dssp CCCCEEETTEEESSSEEECTTS----SCSSHHH--HHHHHHSSCSCEECCCBCSSCBCCSCSCCEEEETTEEEECCCCCB
T ss_pred CCcceEECCEecCCCcEECCCC----CCCCHHH--HHHHHHCCCCEEEeCccCCcccCCCCCCcEEecccceeecCCCCC
Confidence 5899999999999999999732 1234443 45678888887543 322 2
Q ss_pred CCHH----HHHhh-c--CCceeEEEeeeCCHHHHHHHHHHHHHcCCc---EEEEeecCCCC
Q 028827 143 SSIE----EVAAS-C--NAVRFYQLYVFKKRDIAATLVQRAERNGFK---ALVLTADTPRL 193 (203)
Q Consensus 143 ~sle----eia~~-~--~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~---AlvvTVD~p~~ 193 (203)
..++ ++.+. . +.+...|+.- .+.+...+.+++++++|++ +|-+++-+|..
T Consensus 76 ~g~~~~~~~~~~~~~~~~~p~~~~i~g-~~~~~~~~~a~~~~~~g~d~~~~iein~~~P~~ 135 (314)
T 2e6f_A 76 LGFDFYLKYASDLHDYSKKPLFLSISG-LSVEENVAMVRRLAPVAQEKGVLLELNLSCPNV 135 (314)
T ss_dssp SCHHHHHHHHHHTCCTTTCCEEEEECC-SSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCS
T ss_pred cCHHHHHHHHHHHhhcCCCcEEEEeCC-CCHHHHHHHHHHHHHhCCCcCceEEEEcCCCCC
Confidence 2233 33332 1 2466677753 4678888999999999999 89999988876
No 21
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=96.69 E-value=0.0026 Score=54.23 Aligned_cols=99 Identities=17% Similarity=0.187 Sum_probs=63.7
Q ss_pred CCCCcceeecCcccCcceEeccccchhccCchHHHHHHHHH--HhcCCeEE-----------------------ecCC--
Q 028827 88 SRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAA--ASCNTIMV-----------------------LSFT-- 140 (203)
Q Consensus 88 ~~~dtst~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA--~~~gi~~~-----------------------lss~-- 140 (203)
+++|++++|+|.+++.||++|| |+.+... +. .+.+ ...|...+ +++.
T Consensus 3 ~~~~l~~~~~g~~l~npi~~aa-g~~~~~~-~~----~~~~~~~g~G~~~~~si~~~p~~g~~~p~l~~~~~g~~~~~g~ 76 (311)
T 1ep3_A 3 ENNRLSVKLPGLDLKNPIIPAS-GCFGFGE-EY----AKYYDLNKLGSIMVKATTLHPRFGNPTPRVAETASGMLNAIGL 76 (311)
T ss_dssp CCTTTCEEETTEEESSSEEECT-TSSTTST-TG----GGTSCGGGSSCEEEEEECSSCBCCCCSCCEEEETTEEEECCCC
T ss_pred CCCccceEECCEECCCCcEECC-CCCCCCH-HH----HHHHHhcCCCEEEeCeeccCccCCCCCCeEEECCcccccccCC
Confidence 5789999999999999999999 3222111 11 2332 34453331 2222
Q ss_pred CCCCHHHH--------Hhhc-CCceeEEEeeeCCHHHHHHHHHHHHH-cCCcEEEEeecCCCC
Q 028827 141 SSSSIEEV--------AASC-NAVRFYQLYVFKKRDIAATLVQRAER-NGFKALVLTADTPRL 193 (203)
Q Consensus 141 ss~sleei--------a~~~-~~~~w~Qly~~~d~~~~~~ll~rAe~-aG~~AlvvTVD~p~~ 193 (203)
.+.+.+++ .+.. +.+.+.||.-. +.+...+..+++++ +|+++|-+++.+|..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~p~~v~l~~~-~~~~~~~~a~~~~~~~g~d~iei~~~~p~~ 138 (311)
T 1ep3_A 77 QNPGLEVIMTEKLPWLNENFPELPIIANVAGS-EEADYVAVCAKIGDAANVKAIELNISCPNV 138 (311)
T ss_dssp CBCCHHHHHHTHHHHHHHHCTTSCEEEEECCS-SHHHHHHHHHHHTTSTTEEEEEEECCSEEG
T ss_pred CCcCHHHHHHHHHHHHHhcCCCCcEEEEEcCC-CHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 22344433 2213 45778888654 46777888899988 999999999987763
No 22
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1
Probab=96.20 E-value=0.0043 Score=53.80 Aligned_cols=88 Identities=15% Similarity=0.054 Sum_probs=61.7
Q ss_pred ccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCCC---------CHHHHHhhc-CCceeEEEeeeCCHHHH
Q 028827 100 KISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSS---------SIEEVAASC-NAVRFYQLYVFKKRDIA 169 (203)
Q Consensus 100 ~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~---------sleeia~~~-~~~~w~Qly~~~d~~~~ 169 (203)
++..||++|||++. .+ ....+.+++.|..++++.+.+. .++.+ .+. +.+.|+||+ -+|.+..
T Consensus 2 ~l~nri~~APM~~~--t~----~~~r~~~~~~G~gli~te~~~~~~~~~~~~~~~~~l-~~~~~~~~~~QL~-g~~~~~~ 73 (318)
T 1vhn_A 2 SLEVKVGLAPMAGY--TD----SAFRTLAFEWGADFAFSEMVSAKGFLMNSQKTEELL-PQPHERNVAVQIF-GSEPNEL 73 (318)
T ss_dssp ---CEEEECCCTTT--CS----HHHHHHHHTTTCCCEECSCEEHHHHHTTCHHHHHHS-CCTTCTTEEEEEE-CSCHHHH
T ss_pred ccCCCEEECCCCCC--Cc----HHHHHHHHHHCcCEEEeCCEEEcccccCCHhHHHhh-hCcCCCeEEEEeC-CCCHHHH
Confidence 46789999998743 22 4567777777877777654321 12233 112 468999998 6678899
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCCCCc
Q 028827 170 ATLVQRAERNGFKALVLTADTPRLGRR 196 (203)
Q Consensus 170 ~~ll~rAe~aG~~AlvvTVD~p~~g~R 196 (203)
.+..++|+++ |++|-|++.+|....|
T Consensus 74 ~~aa~~a~~~-~d~Iein~gcP~~~~r 99 (318)
T 1vhn_A 74 SEAARILSEK-YKWIDLNAGCPVRKVV 99 (318)
T ss_dssp HHHHHHHTTT-CSEEEEEECCCCHHHH
T ss_pred HHHHHHHHHh-CCEEEEECCCCcHhcC
Confidence 9999999999 9999999999985433
No 23
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=96.20 E-value=0.037 Score=47.28 Aligned_cols=95 Identities=13% Similarity=0.168 Sum_probs=64.9
Q ss_pred cceeecCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEec-CCCCCC--------------------------
Q 028827 92 LSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLS-FTSSSS-------------------------- 144 (203)
Q Consensus 92 tst~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~ls-s~ss~s-------------------------- 144 (203)
++++++|.++..||++|| |. .+.++| ..+.+.+.|..+++. +.+..+
T Consensus 2 l~~~i~g~~l~npv~~Aa-g~---~~~~~~--~~~~~~~~G~g~i~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~~g 75 (311)
T 1jub_A 2 LNTTFANAKFANPFMNAS-GV---HCMTIE--DLEELKASQAGAYITKSSTLEKREGNPLPRYVDLELGSINSMGLPNLG 75 (311)
T ss_dssp CCEEETTEEESSSEEECT-TS---SCSSHH--HHHHHHHSSCSCCBCCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSC
T ss_pred CceEECCEEcCCCcEECC-CC---CCCCHH--HHHHHHHCCCCEEEeCccCCcccCCCCCCcEEecccceeecCCCCCcc
Confidence 678999999999999997 22 233454 336677888777664 221111
Q ss_pred HH----HHHhh---c--CCceeEEEeeeCCHHHHHHHHHHHHHcCCc-EEEEeecCCCC
Q 028827 145 IE----EVAAS---C--NAVRFYQLYVFKKRDIAATLVQRAERNGFK-ALVLTADTPRL 193 (203)
Q Consensus 145 le----eia~~---~--~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~-AlvvTVD~p~~ 193 (203)
++ ++.+. . +.+...|+. -.+.+...+.+++++++|++ +|.+.+-+|..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~p~~~~i~-g~~~~~~~~~a~~~~~~g~d~~iein~~~P~~ 133 (311)
T 1jub_A 76 FDYYLDYVLKNQKENAQEGPIFFSIA-GMSAAENIAMLKKIQESDFSGITELNLSCPNV 133 (311)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCEEEEC-CSSHHHHHHHHHHHHHSCCCSEEEEESCCCCS
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEcC-CCCHHHHHHHHHHHHhcCCCeEEEEeccCCCC
Confidence 22 33222 2 345666764 34678888999999999999 99999988876
No 24
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=95.43 E-value=0.038 Score=48.04 Aligned_cols=87 Identities=18% Similarity=0.187 Sum_probs=55.3
Q ss_pred eeecCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHH-------HhhcCCceeEEEeeeCCH
Q 028827 94 TTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEV-------AASCNAVRFYQLYVFKKR 166 (203)
Q Consensus 94 t~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleei-------a~~~~~~~w~Qly~~~d~ 166 (203)
+++|| +..||+.+||++ +.. ..++.++.++|..-++++. ..+.+++ .+..+.+...|++....
T Consensus 6 ~~~l~--~~~Pii~apM~g--~s~----~~la~av~~aG~lG~i~~~-~~~~~~~~~~i~~i~~~~~~p~gvnl~~~~~- 75 (332)
T 2z6i_A 6 TELLK--IDYPIFQGGMAW--VAD----GDLAGAVSKAGGLGIIGGG-NAPKEVVKANIDKIKSLTDKPFGVNIMLLSP- 75 (332)
T ss_dssp HHHHT--CSSSEEECCCTT--TCC----HHHHHHHHHHTSBEEEECT-TCCHHHHHHHHHHHHHHCCSCEEEEECTTST-
T ss_pred hHHhC--CCCCEEeCCCCC--CCc----HHHHHHHHhCCCcEEeCCC-CCCHHHHHHHHHHHHHhcCCCEEEEecCCCC-
Confidence 34666 788999999974 333 3466777777764334322 1233332 22224567788876322
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecCC
Q 028827 167 DIAATLVQRAERNGFKALVLTADTP 191 (203)
Q Consensus 167 ~~~~~ll~rAe~aG~~AlvvTVD~p 191 (203)
+ ..+.++++.++|++.|.++.+.|
T Consensus 76 ~-~~~~~~~a~~~g~d~V~~~~g~p 99 (332)
T 2z6i_A 76 F-VEDIVDLVIEEGVKVVTTGAGNP 99 (332)
T ss_dssp T-HHHHHHHHHHTTCSEEEECSSCG
T ss_pred C-HHHHHHHHHHCCCCEEEECCCCh
Confidence 1 45788899999999999988755
No 25
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=95.27 E-value=0.1 Score=45.07 Aligned_cols=90 Identities=16% Similarity=0.142 Sum_probs=57.1
Q ss_pred eeecCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHH-------HhhcCCceeEEEeeeCC-
Q 028827 94 TTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEV-------AASCNAVRFYQLYVFKK- 165 (203)
Q Consensus 94 t~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleei-------a~~~~~~~w~Qly~~~d- 165 (203)
+++|| +..||+.+||++ +.+ ..++.++.++|..-+++..+..+.+++ .+..+.+.-.+++....
T Consensus 9 ~~~l~--~~~Pii~apM~g--vs~----~~la~av~~aGglG~i~~~~~~s~~~l~~~i~~i~~~~~~p~~v~l~v~~~~ 80 (328)
T 2gjl_A 9 TETFG--VEHPIMQGGMQW--VGR----AEMAAAVANAGGLATLSALTQPSPEALAAEIARCRELTDRPFGVNLTLLPTQ 80 (328)
T ss_dssp HHHHT--CSSSEEECCCTT--TCS----HHHHHHHHHTTSBCEEETTTSSSHHHHHHHHHHHHHHCSSCCEEEEEECCCS
T ss_pred HHHhC--CCCCEEECCCCC--CCc----HHHHHHHHHCCCeEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence 45665 578999999964 322 357788888876555543322234443 22233455678887510
Q ss_pred -HHHHHHHHHHHHHcCCcEEEEeecCC
Q 028827 166 -RDIAATLVQRAERNGFKALVLTADTP 191 (203)
Q Consensus 166 -~~~~~~ll~rAe~aG~~AlvvTVD~p 191 (203)
.....+.++.+.++|++.|.++.+.|
T Consensus 81 ~~~~~~~~~~~~~~~g~d~V~~~~g~p 107 (328)
T 2gjl_A 81 KPVPYAEYRAAIIEAGIRVVETAGNDP 107 (328)
T ss_dssp SCCCHHHHHHHHHHTTCCEEEEEESCC
T ss_pred cCccHHHHHHHHHhcCCCEEEEcCCCc
Confidence 11246788888999999999998765
No 26
>3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A*
Probab=94.61 E-value=0.058 Score=47.26 Aligned_cols=99 Identities=12% Similarity=0.134 Sum_probs=53.8
Q ss_pred CCCCcceeecCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEe-cCCC-------------------------
Q 028827 88 SRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVL-SFTS------------------------- 141 (203)
Q Consensus 88 ~~~dtst~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~l-ss~s------------------------- 141 (203)
.+.+++|++||.+|..||++|+ +.+..++|. .++..+.|..+++ +|.+
T Consensus 33 ~~~~L~v~~~Gl~f~NPvglAa----G~~~~~~e~--~~~l~~~G~G~v~~~tvt~~pq~GNp~PR~~~l~~~~iN~~G~ 106 (354)
T 3tjx_A 33 GSMSLQVNLLNNTFANPFMNAA----GVMCTTTEE--LVAMTESASGSLVSKSCTPALREGNPTPRYQALPLGSINSMGL 106 (354)
T ss_dssp CCCCCCEEETTEEESSSEEECT----TSSCSSHHH--HHHHHHSSCSCEEEEEECSSCBCCSCSCCEEEETTEEEECCCC
T ss_pred CCCceeEEECCEEcCCCcEEcc----CCCCCCHHH--HHHHHHcCCCEEEeCCcCcccccCCCCCeEEEccccccccccc
Confidence 4689999999999999999985 223455664 3444455544432 2322
Q ss_pred -CCCHHHH----Hhhc---CCceeEEEeeeCCHHHHHHHHHHHH---HcCCcEEEEeecCCCC
Q 028827 142 -SSSIEEV----AASC---NAVRFYQLYVFKKRDIAATLVQRAE---RNGFKALVLTADTPRL 193 (203)
Q Consensus 142 -s~sleei----a~~~---~~~~w~Qly~~~d~~~~~~ll~rAe---~aG~~AlvvTVD~p~~ 193 (203)
+..+|.+ .+.. ..+...++.... .+...+..++++ ..++.+|.|.+-+|..
T Consensus 107 ~n~G~~~~~~~~~~~~~~~~~pvivsi~g~~-~~~~~~~~~~~~~~~~~~ad~ielNiScPn~ 168 (354)
T 3tjx_A 107 PNNGFDFYLAYAAEQHDYGKKPLFLSMSGLS-MRENVEMCKRLAAVATEKGVILELNLSCPNV 168 (354)
T ss_dssp CBCCHHHHHHHHHHTCCTTTCCEEEEECCSS-HHHHHHHHHHHHHHHHHHCCEEEEECC----
T ss_pred CCHHHHHHHHHHHHhhccCCceEEEEEecCC-hHHHHHHHHHHHHhhhcCCCEEEeeeCCCCC
Confidence 2234433 2222 134555654433 333334444333 3478888888887754
No 27
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=92.76 E-value=0.22 Score=43.74 Aligned_cols=86 Identities=13% Similarity=0.095 Sum_probs=55.4
Q ss_pred cCcceEeccccchhccCchHHHHHHHHHHhcC-CeEEecCCCC-CCH-----HHHHhhc--CCceeEEEeeeCCHHHHHH
Q 028827 101 ISAPIIIAPTALHKLANPEGEVATARAAASCN-TIMVLSFTSS-SSI-----EEVAASC--NAVRFYQLYVFKKRDIAAT 171 (203)
Q Consensus 101 ~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~g-i~~~lss~ss-~sl-----eeia~~~--~~~~w~Qly~~~d~~~~~~ 171 (203)
+..||++|||++. . +......+.+.| ..++++-+.+ .++ +++.+.. +.+.+.||. -.+.+...+
T Consensus 2 l~nriv~APM~g~--t----d~~~r~~~r~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~-g~~p~~~~~ 74 (350)
T 3b0p_A 2 LDPRLSVAPMVDR--T----DRHFRFLVRQVSLGVRLYTEMTVDQAVLRGNRERLLAFRPEEHPIALQLA-GSDPKSLAE 74 (350)
T ss_dssp CCCSEEECCCTTT--S----SHHHHHHHHHHCSSSBEECCCEEHHHHHHSCHHHHHCCCGGGCSEEEEEE-CSCHHHHHH
T ss_pred CCCCEEECCCCCC--C----HHHHHHHHHHcCCCCEEEeCCEEechhhcCCHHHHhccCCCCCeEEEEeC-CCCHHHHHH
Confidence 5679999998742 1 222233444444 2444443321 111 2344322 368899998 457888889
Q ss_pred HHHHHHHcCCcEEEEeecCCCC
Q 028827 172 LVQRAERNGFKALVLTADTPRL 193 (203)
Q Consensus 172 ll~rAe~aG~~AlvvTVD~p~~ 193 (203)
..++++++||+.|-|+..+|..
T Consensus 75 aA~~a~~~G~D~IeIn~gcP~~ 96 (350)
T 3b0p_A 75 AARIGEAFGYDEINLNLGCPSE 96 (350)
T ss_dssp HHHHHHHTTCSEEEEEECCCSH
T ss_pred HHHHHHHcCCCEEEECCcCCCC
Confidence 9999999999999999988863
No 28
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=92.68 E-value=0.069 Score=45.84 Aligned_cols=50 Identities=22% Similarity=0.356 Sum_probs=41.4
Q ss_pred cCCceeEEEeee-------CCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhh
Q 028827 152 CNAVRFYQLYVF-------KKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIK 201 (203)
Q Consensus 152 ~~~~~w~Qly~~-------~d~~~~~~ll~rAe~aG~~AlvvTVD~p~~g~Re~d~r 201 (203)
..+..|++|++. .|...+.+..++.++.|++.+.+++|.|..++|..+..
T Consensus 100 ~~~~~~iKlEv~~d~~~llpD~~~tv~aa~~L~~~Gf~Vlpy~~dd~~~akrl~~~G 156 (265)
T 1wv2_A 100 LDGHNLVKLEVLADQKTLFPNVVETLKAAEQLVKDGFDVMVYTSDDPIIARQLAEIG 156 (265)
T ss_dssp TTSCCEEEECCBSCTTTCCBCHHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHSC
T ss_pred cCCCCeEEEEeecCccccCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhC
Confidence 346679999998 67777777777777789999999999999998887654
No 29
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Probab=92.66 E-value=0.075 Score=55.07 Aligned_cols=63 Identities=13% Similarity=0.043 Sum_probs=48.0
Q ss_pred HhhccccccccccCC--CCCCcceeecCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCC
Q 028827 73 AFHRITFRPRILVDV--SRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTS 141 (203)
Q Consensus 73 af~~i~L~pRvL~dv--~~~dtst~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~s 141 (203)
.|+.+.+.+..++.+ +++|+.+ .+..||+++||++..+ .++...++|+||.++|+.+.+|...
T Consensus 824 ~~~dl~~~~~~l~~i~~~ev~~~~-----~I~~Pf~isaMS~Gal-S~ea~~aLA~Aa~~aGg~~~tGeGg 888 (1479)
T 1ea0_A 824 QLRDLLELRSTKAPVPVDEVESIT-----AIRKRFITPGMSMGAL-SPEAHGTLNVAMNRIGAKSDSGEGG 888 (1479)
T ss_dssp SGGGGEEECCSSCCCCGGGSCCHH-----HHHTTEEEEECCBTTB-CHHHHHHHHHHHHHTTCEEECCTTC
T ss_pred chhhhhhccCCCCCCCcccccccc-----cccCCeEecCcccccc-CHHHHHHHHHHHHHcCCeeEcCCCc
Confidence 366666666555543 4566555 6799999999986554 6789999999999999999998753
No 30
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=92.31 E-value=0.63 Score=40.77 Aligned_cols=84 Identities=12% Similarity=0.058 Sum_probs=53.0
Q ss_pred CcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHH-------hhcCCceeEEEeeeCCH--------
Q 028827 102 SAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVA-------ASCNAVRFYQLYVFKKR-------- 166 (203)
Q Consensus 102 s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia-------~~~~~~~w~Qly~~~d~-------- 166 (203)
..||+.+||++ ++ ....+|.++.++|-.-++++. ..+.+++. +..+.+.-++++..++.
T Consensus 10 ~~Pii~apMag-gv----s~~~la~av~~aGglG~i~~~-~~s~~~l~~~i~~~~~~~~~p~gVnl~~~~~~~~~~~~~~ 83 (369)
T 3bw2_A 10 PLPIVQAPMAG-GV----SVPQLAAAVCEAGGLGFLAAG-YKTADGMYQEIKRLRGLTGRPFGVNVFMPQPELAESGAVE 83 (369)
T ss_dssp SSSEEECCCTT-TT----SCHHHHHHHHHTTSBEEEECT-TSCHHHHHHHHHHHHHHCCSCEEEEEECCCCCC---CHHH
T ss_pred cCCEEeCCCCC-CC----CcHHHHHHHHHCCCEEEcCCC-CCCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcccHHHHH
Confidence 88999999975 22 224567777888765555542 23344332 22344555566654431
Q ss_pred -------------------------HHHHHHHHHHHHcCCcEEEEeecCC
Q 028827 167 -------------------------DIAATLVQRAERNGFKALVLTADTP 191 (203)
Q Consensus 167 -------------------------~~~~~ll~rAe~aG~~AlvvTVD~p 191 (203)
+...+.++.+.++|++.|.++...|
T Consensus 84 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~~~g~~ 133 (369)
T 3bw2_A 84 VYAHQLAGEAAWYETELGDPDGGRDDGYDAKLAVLLDDPVPVVSFHFGVP 133 (369)
T ss_dssp HHHHHTHHHHHHTTCCCCCSCSCSSTTHHHHHHHHHHSCCSEEEEESSCC
T ss_pred HHHHHHHHHHHHcCCCcCcccccccccHHHHHHHHHhcCCCEEEEeCCCC
Confidence 1146678888899999999988765
No 31
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*
Probab=91.49 E-value=1.2 Score=39.44 Aligned_cols=106 Identities=10% Similarity=0.086 Sum_probs=64.3
Q ss_pred cccccCCCCCCcceeecCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEe-cCC-------------------
Q 028827 81 PRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVL-SFT------------------- 140 (203)
Q Consensus 81 pRvL~dv~~~dtst~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~l-ss~------------------- 140 (203)
|+--..+..+|++++++|.++..||++|. +....++ ...+.....|..+++ .|.
T Consensus 26 ~~~~~~~~~~~L~~~~~Gl~~~NPv~lAA----G~~~~~~--e~~~~l~~~G~G~v~~ktvt~~pq~GNp~PR~~~~~~~ 99 (354)
T 4ef8_A 26 GGQQMGRGSMSLQVNLLNNTFANPFMNAA----GVMCTTT--EELVAMTESASGSLVSKSCTPALREGNPTPRYQALPLG 99 (354)
T ss_dssp --------CCCCCEEETTEEESSSEEECT----TSSCSSH--HHHHHHHHSSCSCEEEEEECSSCBCCSCSCCEEEETTE
T ss_pred chhhcCCCCCCcceEECCEECCCCCEecc----CCCCCCH--HHHHHHHHcCCCeEEeCcccCcccCCCCCCcEEecchh
Confidence 34344567789999999999999999986 2111223 334555556654433 221
Q ss_pred -------CCCCHHHH----Hhh--c-CCceeEEEeeeCCHHHHHHHHHHHH---HcCCcEEEEeecCCCC
Q 028827 141 -------SSSSIEEV----AAS--C-NAVRFYQLYVFKKRDIAATLVQRAE---RNGFKALVLTADTPRL 193 (203)
Q Consensus 141 -------ss~sleei----a~~--~-~~~~w~Qly~~~d~~~~~~ll~rAe---~aG~~AlvvTVD~p~~ 193 (203)
.+..+|.+ .+. . ..+...||.- .+.+...+.+++++ ++|+++|-|.+-+|..
T Consensus 100 ~iN~~G~~n~G~~~~~~~l~~~~~~~~~pvivsI~G-~~~~d~~~~a~~l~~~~~~g~d~ielNisCPn~ 168 (354)
T 4ef8_A 100 SINSMGLPNNGFDFYLAYAAEQHDYGKKPLFLSMSG-LSMRENVEMCKRLAAVATEKGVILELNLSCPNV 168 (354)
T ss_dssp EEECCCCCBCCHHHHHHHHHHTCCTTTCCEEEEECC-SSHHHHHHHHHHHHHHHHHHCCEEEEECSSCCS
T ss_pred hhccCCCCCcCHHHHHHHHHHHhhcCCCcEEEEecc-CCHHHHHHHHHHHhhhhhcCCCEEEEeCCCCCC
Confidence 23345544 322 1 2467778743 45777778888888 6799999999998865
No 32
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=90.60 E-value=1.5 Score=37.77 Aligned_cols=83 Identities=13% Similarity=0.161 Sum_probs=50.6
Q ss_pred ccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHH----hh---cCCceeEEEeeeCCHHHHHHH
Q 028827 100 KISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVA----AS---CNAVRFYQLYVFKKRDIAATL 172 (203)
Q Consensus 100 ~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia----~~---~~~~~w~Qly~~~d~~~~~~l 172 (203)
.+..||+.+||++ ..+ ..++.++.++|..-+++.. ..+.+++. +. ...+.-.++.... . ...+.
T Consensus 24 ~~~~Pii~apM~g--vs~----~~la~av~~aGglG~i~~~-~~~~~~l~~~i~~i~~~~~~p~gVnl~~~~-~-~~~~~ 94 (326)
T 3bo9_A 24 EIEHPILMGGMAW--AGT----PTLAAAVSEAGGLGIIGSG-AMKPDDLRKAISELRQKTDKPFGVNIILVS-P-WADDL 94 (326)
T ss_dssp TCSSSEEECCCTT--TSC----HHHHHHHHHTTSBEEEECT-TCCHHHHHHHHHHHHTTCSSCEEEEEETTS-T-THHHH
T ss_pred CCCCCEEECCCCC--CCC----HHHHHHHHhCCCcEEeCCC-CCCHHHHHHHHHHHHHhcCCCEEEEEeccC-C-CHHHH
Confidence 4578999999974 333 3477777777754444332 22444332 22 1234445555422 1 23667
Q ss_pred HHHHHHcCCcEEEEeecCC
Q 028827 173 VQRAERNGFKALVLTADTP 191 (203)
Q Consensus 173 l~rAe~aG~~AlvvTVD~p 191 (203)
++.+.++|++.|.++.+.|
T Consensus 95 ~~~~~~~g~d~V~l~~g~p 113 (326)
T 3bo9_A 95 VKVCIEEKVPVVTFGAGNP 113 (326)
T ss_dssp HHHHHHTTCSEEEEESSCC
T ss_pred HHHHHHCCCCEEEECCCCc
Confidence 8888899999999887754
No 33
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=90.47 E-value=0.31 Score=43.96 Aligned_cols=70 Identities=17% Similarity=0.189 Sum_probs=50.1
Q ss_pred Hhhcccccccccc-CCCCCCcceeec-CcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHh
Q 028827 73 AFHRITFRPRILV-DVSRIDLSTTIL-DYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAA 150 (203)
Q Consensus 73 af~~i~L~pRvL~-dv~~~dtst~l~-G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~ 150 (203)
.|++|.|+|..-. .-+++|++|.|- ...+..||+-|||+.. .+..+|.+.+++|-.-+++. ..++|++++
T Consensus 11 t~ddvll~P~~~~~~~~~v~l~t~lt~~l~l~~PIi~a~M~~V------s~~~lA~Ava~aGGlGvi~~--~~~~e~~~~ 82 (400)
T 3ffs_A 11 TFEDILLVPNYSEVLPREVSLETKLTKNVSLKIPLISSAMDTV------TEHLMAVGMARLGGIGIIHK--NMDMESQVN 82 (400)
T ss_dssp CGGGEEECCCCBCSCGGGCCCCEESSSSCEESSSEEECSCTTT------CSSHHHHHHHTTTCEEEECS--SSCHHHHHH
T ss_pred CceeEEEecCCCccCHHHccCccchhcccCCCCCEEeCCCCCc------CcHHHHHHHHHCCCEEEeCC--CCCHHHHHH
Confidence 4899999997433 225789999886 4678999999998743 23356777777877777764 556776544
No 34
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}
Probab=90.03 E-value=1.8 Score=38.11 Aligned_cols=96 Identities=14% Similarity=0.113 Sum_probs=64.0
Q ss_pred CCcceeecCcccCcceEeccccchhccCchH-HHHHHHHHHhcCCeEEec-CC--------------------------C
Q 028827 90 IDLSTTILDYKISAPIIIAPTALHKLANPEG-EVATARAAASCNTIMVLS-FT--------------------------S 141 (203)
Q Consensus 90 ~dtst~l~G~~~s~Pi~iaP~g~~~l~hp~g-E~a~AraA~~~gi~~~ls-s~--------------------------s 141 (203)
+|++++++|.++..||++|. + +++ .....+.....|..+++. |. .
T Consensus 36 ~~L~~~~~Gl~~~NPv~lAa----G---~~~~~~e~~~~~~~~G~G~v~~ktvt~~pq~gnp~PR~~~~~~~~iN~~G~~ 108 (345)
T 3oix_A 36 VSTHTTIGSFDFDNCLMNAA----G---VYCMTREELAAIDHSEAGSFVTXTGTLEERAGNPQPRYADTKLGSINSMGLP 108 (345)
T ss_dssp CCCCEEETTEEESCSEEECT----T---SSCSSHHHHHHHHTSSCSBCBCCCBCSSCBCCSCSCCEEECSSEEEECCCCC
T ss_pred CCcCeEECCEECCCCCEEcC----C---CCCCCHHHHHHHHHcCCCeEEeeeecCCCCCCCCCCcEEecccchhccCCCC
Confidence 58999999999999999984 2 121 123445556666655543 21 1
Q ss_pred CCCHHH----HHhh----cCCceeEEEeeeCCHHHHHHHHHHHHHcCCc-EEEEeecCCCC
Q 028827 142 SSSIEE----VAAS----CNAVRFYQLYVFKKRDIAATLVQRAERNGFK-ALVLTADTPRL 193 (203)
Q Consensus 142 s~slee----ia~~----~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~-AlvvTVD~p~~ 193 (203)
+..+|. +.+. ...+...||.- .+.+...+..++++++|+. +|-|.+-+|..
T Consensus 109 n~G~~~~~~~l~~~~~~~~~~pvivsI~g-~~~~d~~~~a~~l~~~g~~d~ielNisCPn~ 168 (345)
T 3oix_A 109 NLGINYYLDYVTELQKQPDSKNHFLSLVG-MSPEETHTILXMVEASKYQGLVELNLSCPNV 168 (345)
T ss_dssp BSCHHHHHHHHHHHHHSTTCCCCEEEECC-SSHHHHHHHHHHHHHSSCCSEEEEECSCCCS
T ss_pred ChhHHHHHHHHHHHhhccCCCCEEEEecC-CCHHHHHHHHHHHhccCCCcEEEEecCCCCc
Confidence 223433 3332 23567788853 4677788889999999987 99999988764
No 35
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Probab=87.17 E-value=0.34 Score=50.37 Aligned_cols=63 Identities=10% Similarity=-0.045 Sum_probs=44.5
Q ss_pred hhccccccccccCC--CCCCcceeecCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCC
Q 028827 74 FHRITFRPRILVDV--SRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSS 142 (203)
Q Consensus 74 f~~i~L~pRvL~dv--~~~dtst~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss 142 (203)
|+.+...+..++.+ +++|+.+ .+..||+++||++..+ .++...++|.||.++|+.+.+|....
T Consensus 842 ~r~l~~~~~~~~~i~~~ev~~~~-----~I~~Pfii~aMS~Gsl-S~ea~~aLA~Aas~aGg~~~tGeGg~ 906 (1520)
T 1ofd_A 842 LRDLLDFNADQPAISLEEVESVE-----SIVKRFCTGGMSLGAL-SREAHETLAIAMNRLGAKSNSGEGGE 906 (1520)
T ss_dssp GGGGEEECCSSCCCCGGGSCCHH-----HHHTTEECCCBCTTTS-CHHHHHHHHHHHHHHTCBCEECTTCC
T ss_pred hhhhccccCCCCCCCchhhcccc-----cccCceEecCcCcccc-cHHHHHHHHHHHHHcCCceEeCCCCC
Confidence 44444444444322 3444444 6799999999976544 46889999999999999999997643
No 36
>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O
Probab=80.16 E-value=11 Score=32.28 Aligned_cols=66 Identities=14% Similarity=0.105 Sum_probs=46.1
Q ss_pred HHHHHHHHhcCCeEEecCCCCCCHHHHHhhcCCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 028827 122 VATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 122 ~a~AraA~~~gi~~~lss~ss~sleeia~~~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
...++.|.++|.=++--++...+++++.+..+-+...+==...+.+...++++.|.++|+..+++.
T Consensus 192 ~~aariA~elGAD~VKt~~t~e~~~~vv~~~~vPVv~~GG~~~~~~~~l~~v~~ai~aGA~Gv~vG 257 (295)
T 3glc_A 192 SLATRIAAEMGAQIIKTYYVEKGFERIVAGCPVPIVIAGGKKLPEREALEMCWQAIDQGASGVDMG 257 (295)
T ss_dssp HHHHHHHHHTTCSEEEEECCTTTHHHHHHTCSSCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHhCCCEEEeCCCHHHHHHHHHhCCCcEEEEECCCCCHHHHHHHHHHHHHhCCeEEEeH
Confidence 347889999998876666555678999877653321111112256777889999999999998875
No 37
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=69.00 E-value=45 Score=28.46 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=17.1
Q ss_pred ceeecCcccCcceEeccccch
Q 028827 93 STTILDYKISAPIIIAPTALH 113 (203)
Q Consensus 93 st~l~G~~~s~Pi~iaP~g~~ 113 (203)
..+|=|.++.-+|++|||+..
T Consensus 8 p~~ig~~~l~NRiv~aPm~~~ 28 (338)
T 1z41_A 8 PITIKDMTLKNRIVMSPMCMY 28 (338)
T ss_dssp CEEETTEEESSSEEECCCCCC
T ss_pred CeeECCEEEcCccEECCcCCC
Confidence 356778899999999998654
No 38
>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1
Probab=68.43 E-value=25 Score=31.85 Aligned_cols=109 Identities=12% Similarity=0.078 Sum_probs=60.9
Q ss_pred cccccccccCCCCCCcceeecCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEec-CC---------------
Q 028827 77 ITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLS-FT--------------- 140 (203)
Q Consensus 77 i~L~pRvL~dv~~~dtst~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~ls-s~--------------- 140 (203)
+.+.|+.. ....+.++++++|.++..||++|+ |..+ .++ ..++..+.|..+++. +.
T Consensus 68 ~~~~~~~~-~~~~~~l~~~i~Gl~~~NPvglAA-G~dk----~~~--~~~~l~~~GfG~v~~gtvT~~pq~GNp~PR~~r 139 (443)
T 1tv5_A 68 YNILPYDT-SNDSIYACTNIKHLDFINPFGVAA-GFDK----NGV--CIDSILKLGFSFIEIGTITPRGQTGNAKPRIFR 139 (443)
T ss_dssp TTCSCCCC-SCCCGGGCEEETTEEESSSEEECT-TTTT----TCS--SHHHHHTTTCSEEEEEEECSSCBCCSCSCCEEE
T ss_pred ccCCcccc-cCCCccCCeEECCEEeCCCcEECC-cccC----ccH--HHHHHHhcCCCEEEEeeeecCCCCCCCCccEEe
Confidence 35555432 223456799999999999999996 2211 222 122235556444331 11
Q ss_pred -------------CCCCHHHHHhh--------------cCCceeEEEeeeCC-HHHHHHHHHHHHHc--CCcEEEEeecC
Q 028827 141 -------------SSSSIEEVAAS--------------CNAVRFYQLYVFKK-RDIAATLVQRAERN--GFKALVLTADT 190 (203)
Q Consensus 141 -------------ss~sleeia~~--------------~~~~~w~Qly~~~d-~~~~~~ll~rAe~a--G~~AlvvTVD~ 190 (203)
.+..++.+.+. .+.+...|+...+| .+...+.++-|++. ++++|.|.+-+
T Consensus 140 l~e~~~iiN~~GfnN~G~~~~~~~l~~~~~~~~~~~~~~~~~vgvni~~~~~~~~~~~dy~~~a~~l~~~aD~ieiNisc 219 (443)
T 1tv5_A 140 DVESRSIINSCGFNNMGCDKVTENLILFRKRQEEDKLLSKHIVGVSIGKNKDTVNIVDDLKYCINKIGRYADYIAINVSS 219 (443)
T ss_dssp ETTTTEEEECCCSCBSCHHHHHHHHHHHHHHHHHCSTTTTCEEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEECCC
T ss_pred ccccceeeeccccCChhHHHHHHHHHHHhhhcccccccCCceEEEEecCcccchHHHHHHHHHHHHHhcCCCEEEEeccC
Confidence 11223333221 02456678876653 23355555555554 59999999998
Q ss_pred CCC
Q 028827 191 PRL 193 (203)
Q Consensus 191 p~~ 193 (203)
|..
T Consensus 220 Pnt 222 (443)
T 1tv5_A 220 PNT 222 (443)
T ss_dssp TTS
T ss_pred CCC
Confidence 875
No 39
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=66.20 E-value=11 Score=35.36 Aligned_cols=66 Identities=18% Similarity=0.293 Sum_probs=43.2
Q ss_pred HhhccccccccccCC--CCCCcceee-cCcccCcceEeccc-cchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHH
Q 028827 73 AFHRITFRPRILVDV--SRIDLSTTI-LDYKISAPIIIAPT-ALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEV 148 (203)
Q Consensus 73 af~~i~L~pRvL~dv--~~~dtst~l-~G~~~s~Pi~iaP~-g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleei 148 (203)
-|+++.|+|..- ++ +++|++|.| =+.++..||+-||| +.+ |..+|-+-++.|=.-++ .-+.++|+-
T Consensus 61 TfDDVlLvP~~s-~v~p~~Vdl~t~lt~~i~L~iPlvSA~MDTVT-------e~~MAIamAr~GGiGvI--H~n~sie~Q 130 (556)
T 4af0_A 61 TYNDFLVLPGHI-NFPASDVSLQSKATKNIVLNTPFLSSPMDTVT-------EDRMAIALALHGGLGII--HHNCSAEEQ 130 (556)
T ss_dssp CGGGEEECCCCC-CSCGGGCCCCEEEETTEEESSCEEECCCTTTC-------SHHHHHHHHHTTCEEEE--CCSSCHHHH
T ss_pred ChhhEEEccCCC-CCCcccceeeeeccCCcEeCCCEEecCccccc-------CHHHHHHHHHCCCeEEE--cCCCCHHHH
Confidence 489999999753 33 468999988 47789999999996 322 33455555555544444 233445543
No 40
>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...
Probab=66.16 E-value=60 Score=28.19 Aligned_cols=46 Identities=9% Similarity=0.127 Sum_probs=28.3
Q ss_pred ceeecCcccCcceEeccccchhccCchH---HHHHHHHHHhcCCeEEec
Q 028827 93 STTILDYKISAPIIIAPTALHKLANPEG---EVATARAAASCNTIMVLS 138 (203)
Q Consensus 93 st~l~G~~~s~Pi~iaP~g~~~l~hp~g---E~a~AraA~~~gi~~~ls 138 (203)
..+|=+..+.-.|++|||+...-..++| +..+..-++.+|..++++
T Consensus 8 P~~ig~~~l~NRiv~aPm~~~~a~~~~g~~t~~~~~~y~~rAg~GLiit 56 (364)
T 1vyr_A 8 PLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRASAGLIIS 56 (364)
T ss_dssp CEEETTEEESSSEEECCCCCCCCBTTTTBCCHHHHHHHHHTTTSSEEEE
T ss_pred CeeECCEEECCccEECCCCCCcccCCCCCCCHHHHHHHHHHhcCCEEEE
Confidence 3566677888999999987643112333 455555555556666554
No 41
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=65.41 E-value=28 Score=29.02 Aligned_cols=82 Identities=7% Similarity=-0.019 Sum_probs=49.9
Q ss_pred CcceEeccccchhccCchHHHHHHHHHHhcCCe-EEecCCC---C-------CCHH---HHHhh----cCCceeEEEeee
Q 028827 102 SAPIIIAPTALHKLANPEGEVATARAAASCNTI-MVLSFTS---S-------SSIE---EVAAS----CNAVRFYQLYVF 163 (203)
Q Consensus 102 s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~-~~lss~s---s-------~sle---eia~~----~~~~~w~Qly~~ 163 (203)
..|++++-.| ..++.-...++.+.++|.- ++-=+++ . .+.| ++.++ .+-+.+.-+...
T Consensus 93 ~~p~~~~i~g----~~~~~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~~~Pv~vKi~~~ 168 (311)
T 1jub_A 93 EGPIFFSIAG----MSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFTKPLGVKLPPY 168 (311)
T ss_dssp SSCCEEEECC----SSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCC
T ss_pred CCCEEEEcCC----CCHHHHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 4577665432 1345557788888888744 2221121 0 1232 33332 234666667666
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEe
Q 028827 164 KKRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 164 ~d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
.|.+...++.++++++|+++|.++
T Consensus 169 ~~~~~~~~~a~~~~~~G~d~i~v~ 192 (311)
T 1jub_A 169 FDLVHFDIMAEILNQFPLTYVNSV 192 (311)
T ss_dssp CSHHHHHHHHHHHTTSCCCEEEEC
T ss_pred CCHHHHHHHHHHHHHcCCcEEEec
Confidence 677778888999999999999874
No 42
>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*
Probab=65.26 E-value=26 Score=30.58 Aligned_cols=45 Identities=13% Similarity=0.251 Sum_probs=27.2
Q ss_pred eeecCcccCcceEeccccchhccCchH---HHHHHHHHHhcCCeEEec
Q 028827 94 TTILDYKISAPIIIAPTALHKLANPEG---EVATARAAASCNTIMVLS 138 (203)
Q Consensus 94 t~l~G~~~s~Pi~iaP~g~~~l~hp~g---E~a~AraA~~~gi~~~ls 138 (203)
.+|=|.++.-.|++|||+...-..++| +..+..-++.++..++++
T Consensus 9 ~~ig~~~l~NRiv~aPm~~~~a~~~~g~~t~~~~~~y~~rA~~GLiit 56 (365)
T 2gou_A 9 ITLGALTLKNRIVMPPMTRSRASQPGDVANHMMAIYYAQRASAGLIVS 56 (365)
T ss_dssp EEETTEEESSSEEECCCCCCCCBTTTTBCCHHHHHHHHTTTTSSEEEE
T ss_pred eeECCEEEcCceEECCCCCCcccCCCCCCCHHHHHHHHHHhcCCEEEE
Confidence 566678889999999987553211343 444545455555555544
No 43
>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A*
Probab=62.31 E-value=12 Score=30.66 Aligned_cols=72 Identities=14% Similarity=0.084 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhcCC--eEEecCCCCCCHHHHHhhcCCceeEEE------------------------eeeCCHHHHHHHH
Q 028827 120 GEVATARAAASCNT--IMVLSFTSSSSIEEVAASCNAVRFYQL------------------------YVFKKRDIAATLV 173 (203)
Q Consensus 120 gE~a~AraA~~~gi--~~~lss~ss~sleeia~~~~~~~w~Ql------------------------y~~~d~~~~~~ll 173 (203)
-+..+++.-++.|. ..+++|+....++.+.+..|...-..+ +.+.....+.+++
T Consensus 118 ~~~~v~~~l~~~~~~~~v~~~SF~~~~l~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 197 (250)
T 3ks6_A 118 FVALVIAGLERHSMLERTTFSSFLLASMDELWKATTRPRLWLVSPSVLQQLGPGAVIETAIAHSIHEIGVHIDTADAGLM 197 (250)
T ss_dssp HHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCCSCEEEEECHHHHHHHHHHHHHHHHHHTTCCEEEEEGGGCCHHHH
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHCCCCcEEEEecccccccchhHHHHHHHhcCCCEEecchhhCCHHHH
Confidence 34455555555443 456666666666666655553211111 1112233456889
Q ss_pred HHHHHcCCcEEEEeecCC
Q 028827 174 QRAERNGFKALVLTADTP 191 (203)
Q Consensus 174 ~rAe~aG~~AlvvTVD~p 191 (203)
++|.++|.+..+.|||.+
T Consensus 198 ~~~~~~G~~V~~WTvn~~ 215 (250)
T 3ks6_A 198 AQVQAAGLDFGCWAAHTP 215 (250)
T ss_dssp HHHHHTTCEEEEECCCSH
T ss_pred HHHHHCCCEEEEEeCCCH
Confidence 999999999999999865
No 44
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=59.27 E-value=7.9 Score=34.12 Aligned_cols=44 Identities=23% Similarity=0.153 Sum_probs=27.8
Q ss_pred hhhHHHHHHHhhccccccccccCCCCCCcceeecCcccCcceEecc
Q 028827 64 EHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAP 109 (203)
Q Consensus 64 e~T~~~N~~af~~i~L~pRvL~dv~~~dtst~l~G~~~s~Pi~iaP 109 (203)
|.+++--..+++. .+.|+. +....++++++++|.++..||++|.
T Consensus 24 e~ah~~~~~~l~~-~~~~~~-~~~~~~~L~~~~~Gl~~~NPvglAa 67 (367)
T 3zwt_A 24 ESAHRLAVRFTSL-GLLPRA-RFQDSDMLEVRVLGHKFRNPVGIAA 67 (367)
T ss_dssp HHHHHHHHHHHHT-TCC----CCCCCGGGCEEETTEEESSSEEECT
T ss_pred HHHHHHHHHHHHh-cccccc-ccCCCCCCcEEECCEEcCCCCEeCC
Confidence 3344444444442 244442 2346688999999999999999985
No 45
>2jz7_A Selenium binding protein; NMR {Methanococcus vannielii}
Probab=56.94 E-value=9.9 Score=26.75 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHcCCcEEE-EeecCC
Q 028827 166 RDIAATLVQRAERNGFKALV-LTADTP 191 (203)
Q Consensus 166 ~~~~~~ll~rAe~aG~~Alv-vTVD~p 191 (203)
...+++|+++|++.|+.||+ +.+|+.
T Consensus 34 ~~A~~rm~e~A~~lGAnAVVgvr~d~~ 60 (81)
T 2jz7_A 34 DEIVENLRKQVKAKGGMGLIAFRITCA 60 (81)
T ss_dssp HHHHHHHHHHHHHTTCCEEECCCCCCC
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEcc
Confidence 46678899999999999975 444543
No 46
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=53.13 E-value=17 Score=33.10 Aligned_cols=102 Identities=19% Similarity=0.199 Sum_probs=58.4
Q ss_pred hhccccccccccC-CCCCCcceeec-CcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHh-
Q 028827 74 FHRITFRPRILVD-VSRIDLSTTIL-DYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAA- 150 (203)
Q Consensus 74 f~~i~L~pRvL~d-v~~~dtst~l~-G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~- 150 (203)
|+++.|.|..-.= -+++|++|.+- +..+..||+.|||... -+.+.+.+- |..-|+.++-. +.+.|+.++
T Consensus 13 ~~d~~~~p~~~~~~~~~~~~~t~lt~~i~l~iPivsa~MdtV----Te~~ma~a~-a~~GGiGvI~~---n~s~e~qa~~ 84 (496)
T 4fxs_A 13 FDDVLLVPAHSTVLPNTADLRTRLTKNIALNIPMVSASMDTV----TEARLAIAL-AQEGGIGFIHK---NMSIEQQAAQ 84 (496)
T ss_dssp GGGEEECCCCCCCCGGGCBCCEEEETTEEESSSEEECCCTTT----CSHHHHHHH-HHHTCEEEECS---SSCHHHHHHH
T ss_pred cccEEEecCccccccccccccceeccccccCCCceecCcchh----hHHHHHHHH-HHcCCcceecC---CCCHHHHHHH
Confidence 8999999964321 13588888774 5678999999997432 134433322 34455555543 334544322
Q ss_pred ---h---cC----CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEee
Q 028827 151 ---S---CN----AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTA 188 (203)
Q Consensus 151 ---~---~~----~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTV 188 (203)
. .. .+.|+ . ....+.+.++...+.++..+.|+=
T Consensus 85 V~~Vk~~~~~m~~d~v~v----~-~~~tv~ea~~~m~~~~~s~~PVvd 127 (496)
T 4fxs_A 85 VHQVKIFEAGVVTHPVTV----R-PEQTIADVMELTHYHGFAGFPVVT 127 (496)
T ss_dssp HHHHHHCCC--CBCCCCB----C-SSSBHHHHHHHHTSSCCCEEEEEC
T ss_pred HHhccccccccccCceEE----C-CCCCHHHHHHHHHHcCCcEEEEEc
Confidence 1 11 22221 2 233445566666688998888864
No 47
>1vr4_A Hypothetical protein APC22750; structural genomics, pentamer, PSI, PR structure initiative, the midwest center for structural GEN MCSG; 2.09A {Bacillus cereus} SCOP: d.230.5.1 PDB: 2gtc_A
Probab=52.90 E-value=12 Score=27.23 Aligned_cols=28 Identities=18% Similarity=0.219 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHcCCcEEE-EeecCCCC
Q 028827 166 RDIAATLVQRAERNGFKALV-LTADTPRL 193 (203)
Q Consensus 166 ~~~~~~ll~rAe~aG~~Alv-vTVD~p~~ 193 (203)
++.+.+|.++|++.|+.||+ |.+|+...
T Consensus 59 ~~A~~rm~~~A~~lGAnAVVgvr~d~~~i 87 (103)
T 1vr4_A 59 DIAMDEMKELAKQKGANAIVGVDVDYEVV 87 (103)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEeeee
Confidence 56778899999999999965 66665433
No 48
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*
Probab=52.46 E-value=26 Score=37.72 Aligned_cols=102 Identities=15% Similarity=0.142 Sum_probs=59.0
Q ss_pred cccccccC-CCCCCccee---ecCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHh----
Q 028827 79 FRPRILVD-VSRIDLSTT---ILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAA---- 150 (203)
Q Consensus 79 L~pRvL~d-v~~~dtst~---l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~---- 150 (203)
+.||..+- -.+++++|. ++| ..||+.|||++.- .+..+|.|+.++|-.-+++.....+.|++.+
T Consensus 558 f~prlv~~~~~~~~l~t~~t~~lg---~~PIi~a~M~~~v-----s~~~LaaAva~aGglG~i~g~g~~~~e~l~~~i~~ 629 (2060)
T 2uva_G 558 HGPRLVKTSVGQTFVDTKMSRLLG---VPPVMVAGMTPTT-----VPWDFVAATMNAGYHIELAGGGYYNAQKMSDAISK 629 (2060)
T ss_dssp HCCEEEECTTCCEEEECHHHHHHT---SCSEEECCCTTTT-----CSHHHHHHHHHTTCEECEEGGGCCSHHHHHHHHHH
T ss_pred cCCcceecCCCceecchhhhhccc---cceEEecCCCCcc-----ccHHHHHHHHHCCCEEEECcCCCCCHHHHHHHHHH
Confidence 46776652 223344443 577 5899999997421 1345788889999888883333344554432
Q ss_pred ---hcC--CceeEEEee-eCC-HHHHHHHHHHHHHcCCcE--EEEee
Q 028827 151 ---SCN--AVRFYQLYV-FKK-RDIAATLVQRAERNGFKA--LVLTA 188 (203)
Q Consensus 151 ---~~~--~~~w~Qly~-~~d-~~~~~~ll~rAe~aG~~A--lvvTV 188 (203)
..+ .+.-+-+.. ..+ .+...++++.+.+.|+.. |.++.
T Consensus 630 vk~~~~~~~p~gvN~~~~~p~~~~~~~~~~~~~~~~gv~i~gv~~~~ 676 (2060)
T 2uva_G 630 IEKAIPPGRGITVNLIYVNPRAMGWQIPLLGRLRADGVPIEGLTIGA 676 (2060)
T ss_dssp HGGGSCTTCCEEEEEETTCTTHHHHHHHHHHHHHTTTCCEEEEEEES
T ss_pred HHhhcccCCCeEecccccCcccchhHHHHHHHHHHcCCCcceEeecC
Confidence 221 232222222 222 123568899999999998 44444
No 49
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=52.29 E-value=25 Score=30.87 Aligned_cols=34 Identities=18% Similarity=0.114 Sum_probs=26.9
Q ss_pred chHHHHHHHHHHhcCCeEEecCCCCCCHHHHHhh
Q 028827 118 PEGEVATARAAASCNTIMVLSFTSSSSIEEVAAS 151 (203)
Q Consensus 118 p~gE~a~AraA~~~gi~~~lss~ss~sleeia~~ 151 (203)
.+|-..+.+.+.+.|++++..-+...+++.+++.
T Consensus 156 ~egl~~l~~~~~e~Gl~~~te~~d~~~~~~l~~~ 189 (350)
T 1vr6_A 156 EKGLEYLREAADKYGMYVVTEALGEDDLPKVAEY 189 (350)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHh
Confidence 3566788889999999999988887777777654
No 50
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=51.99 E-value=1e+02 Score=28.62 Aligned_cols=20 Identities=10% Similarity=0.104 Sum_probs=16.3
Q ss_pred ceeecCcccCcceEeccccc
Q 028827 93 STTILDYKISAPIIIAPTAL 112 (203)
Q Consensus 93 st~l~G~~~s~Pi~iaP~g~ 112 (203)
..+|=+.++.-+|++|||+.
T Consensus 17 p~~ig~~~l~NRiv~apm~~ 36 (690)
T 3k30_A 17 PVQIGPFTTKNRFYQVPHCN 36 (690)
T ss_dssp CCEETTEECSSSEEECCCCC
T ss_pred CeeECCEEECCCeEeCCCcC
Confidence 46677889999999999853
No 51
>3qkb_A Uncharacterized protein; beta/alpha-propeller, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.73A {Pediococcus pentosaceus}
Probab=51.86 E-value=13 Score=27.73 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHcCCcEEE-EeecCC
Q 028827 166 RDIAATLVQRAERNGFKALV-LTADTP 191 (203)
Q Consensus 166 ~~~~~~ll~rAe~aG~~Alv-vTVD~p 191 (203)
.+...+|+++|++.|+.||+ |.+|+-
T Consensus 61 ~eA~~rM~e~A~~lGANAVIgvrfdts 87 (111)
T 3qkb_A 61 DEAKQKLKKKADLLEGDGIIGLKYNTE 87 (111)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEhh
Confidence 46677899999999999975 555544
No 52
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=51.18 E-value=62 Score=26.96 Aligned_cols=81 Identities=20% Similarity=0.121 Sum_probs=51.7
Q ss_pred ceEeccccchhccCchHHHHHHHHHHhcCCeE--EecCC---CCCCHHHHHh-------hcCCceeEEEeeeCCHHHHHH
Q 028827 104 PIIIAPTALHKLANPEGEVATARAAASCNTIM--VLSFT---SSSSIEEVAA-------SCNAVRFYQLYVFKKRDIAAT 171 (203)
Q Consensus 104 Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~--~lss~---ss~sleeia~-------~~~~~~w~Qly~~~d~~~~~~ 171 (203)
|.++.|+- .+-.+.++-..+++-.-+.|+-- .+||- .+.+.||-.+ +..+ .+.++- ..+-..+.+
T Consensus 5 ~a~vTPf~-dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g-vi~Gvg-~~~t~~ai~ 81 (286)
T 2r91_A 5 APVITTFR-GGRLDPELFANHVKNITSKGVDVVFVAGTTGLGPALSLQEKMELTDAATSAARR-VIVQVA-SLNADEAIA 81 (286)
T ss_dssp EECCCCEE-TTEECHHHHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHHHHCSS-EEEECC-CSSHHHHHH
T ss_pred EeEecCcC-CCccCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-EEEeeC-CCCHHHHHH
Confidence 55667766 55556677777777777778743 44553 3345654322 2234 223321 235677889
Q ss_pred HHHHHHHcCCcEEEEe
Q 028827 172 LVQRAERNGFKALVLT 187 (203)
Q Consensus 172 ll~rAe~aG~~AlvvT 187 (203)
+.+.|+++|++++++.
T Consensus 82 la~~A~~~Gadavlv~ 97 (286)
T 2r91_A 82 LAKYAESRGAEAVASL 97 (286)
T ss_dssp HHHHHHHTTCSEEEEC
T ss_pred HHHHHHhcCCCEEEEc
Confidence 9999999999999887
No 53
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=51.03 E-value=33 Score=30.63 Aligned_cols=104 Identities=19% Similarity=0.230 Sum_probs=57.5
Q ss_pred Hhhcccccccccc-CCCCCCcceeecC-cccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHh
Q 028827 73 AFHRITFRPRILV-DVSRIDLSTTILD-YKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAA 150 (203)
Q Consensus 73 af~~i~L~pRvL~-dv~~~dtst~l~G-~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~ 150 (203)
.|+++.|+|.-.. +-+++|+++.|-. ..+..||+.+||... -+.| ++.+..+.|-.-.+.. ..+.|++.+
T Consensus 13 ~~~d~~~~p~~~~~~p~~v~~~t~lt~~l~~~~Piv~a~M~~v----t~~e--La~av~~~Gg~G~i~~--~~~~e~~~~ 84 (491)
T 1zfj_A 13 TFDDVLLIPAESHVLPNEVDLKTKLADNLTLNIPIITAAMDTV----TGSK--MAIAIARAGGLGVIHK--NMSITEQAE 84 (491)
T ss_dssp CGGGEEECCCCCCSCGGGCCCCEEEETTEEESSSEEECCCTTT----CSHH--HHHHHHHTTCEEEECC--SSCHHHHHH
T ss_pred ChhhEEeccCcCCcCccccccchhhhhcceecCceEecCchhc----cHHH--HHHHHHHcCCceEEeC--CCCHHHHHH
Confidence 4899999998644 3367888887643 477889999998732 1233 3334444443333432 245554332
Q ss_pred h-------cC--CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 028827 151 S-------CN--AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 151 ~-------~~--~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
. .. .+..+ .+..+ .-..+.++...+.++..+.|.
T Consensus 85 ~i~~v~~~~~im~~~~~--~v~~~-~tv~ea~~~m~~~~~~~~pVv 127 (491)
T 1zfj_A 85 EVRKVKRSENGVIIDPF--FLTPE-HKVSEAEELMQRYRISGVPIV 127 (491)
T ss_dssp HHHHHHHHTTTTSSSCC--CBCSS-SBHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHhhHHhcCcCCCe--EECCC-CcHHHHHHHHHHcCCCEEEEE
Confidence 1 11 11111 11222 234556666667888887775
No 54
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=50.85 E-value=55 Score=25.81 Aligned_cols=85 Identities=18% Similarity=0.252 Sum_probs=57.4
Q ss_pred eeecCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCC-CCCCHHHHHhhcCCceeEEEeeeCCHHHHHHH
Q 028827 94 TTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFT-SSSSIEEVAASCNAVRFYQLYVFKKRDIAATL 172 (203)
Q Consensus 94 t~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~-ss~sleeia~~~~~~~w~Qly~~~d~~~~~~l 172 (203)
..++-+.++.|+.-=|+.+. |--.++.++-+..+-..+++.. ....++.+....+-. ++.|...+.+..++.
T Consensus 62 a~~lr~~~~iPVV~I~~s~~-----Dil~al~~a~~~~~kIavvg~~~~~~~~~~~~~ll~~~--i~~~~~~~~~e~~~~ 134 (196)
T 2q5c_A 62 SDYIKKSVSIPSISIKVTRF-----DTMRAVYNAKRFGNELALIAYKHSIVDKHEIEAMLGVK--IKEFLFSSEDEITTL 134 (196)
T ss_dssp HHHHHTTCSSCEEEECCCHH-----HHHHHHHHHGGGCSEEEEEEESSCSSCHHHHHHHHTCE--EEEEEECSGGGHHHH
T ss_pred HHHHHHhCCCCEEEEcCCHh-----HHHHHHHHHHhhCCcEEEEeCcchhhHHHHHHHHhCCc--eEEEEeCCHHHHHHH
Confidence 44555667889887665443 4456676665554444444432 334667777766532 356888889999999
Q ss_pred HHHHHHcCCcEEE
Q 028827 173 VQRAERNGFKALV 185 (203)
Q Consensus 173 l~rAe~aG~~Alv 185 (203)
++++++.|+++|+
T Consensus 135 i~~l~~~G~~vvV 147 (196)
T 2q5c_A 135 ISKVKTENIKIVV 147 (196)
T ss_dssp HHHHHHTTCCEEE
T ss_pred HHHHHHCCCeEEE
Confidence 9999999999876
No 55
>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*
Probab=50.70 E-value=84 Score=27.44 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=16.7
Q ss_pred ceeecCcccCcceEeccccch
Q 028827 93 STTILDYKISAPIIIAPTALH 113 (203)
Q Consensus 93 st~l~G~~~s~Pi~iaP~g~~ 113 (203)
..+|=+..+.-.|++|||+..
T Consensus 14 P~~ig~~~l~NRiv~aPm~~~ 34 (377)
T 2r14_A 14 PLQLGSLSLPNRVIMAPLTRS 34 (377)
T ss_dssp CEEETTEEESCSEEECCCCCC
T ss_pred CeeECCEEecCCeEECCCcCC
Confidence 456767888899999998754
No 56
>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2
Probab=50.48 E-value=15 Score=31.40 Aligned_cols=67 Identities=15% Similarity=0.189 Sum_probs=42.3
Q ss_pred chHHHHHHHHHHhcCCeEEecCCCC----CCHHHHH-------hhcCCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEE
Q 028827 118 PEGEVATARAAASCNTIMVLSFTSS----SSIEEVA-------ASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVL 186 (203)
Q Consensus 118 p~gE~a~AraA~~~gi~~~lss~ss----~sleeia-------~~~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~Alvv 186 (203)
.+.-.++.+||++.+.|.++..... .+++.++ +..+-|-.+.| |.....+.+++|.++||.-+.+
T Consensus 28 ~e~~~avl~AAe~~~sPvIlq~s~~~~~y~g~~~~~~~v~~~a~~~~VPValHl----DHg~~~e~i~~ai~~GFtSVMi 103 (286)
T 1gvf_A 28 AETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHL----DHHESLDDIRRKVHAGVRSAMI 103 (286)
T ss_dssp HHHHHHHHHHHHHHTCCCEEEECTTHHHHSCHHHHHHHHHHHHHHTTSCBEEEE----EEECCHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEECChhHHhhcCHHHHHHHHHHHHHhCCCcEEEEc----CCCCCHHHHHHHHHcCCCeEEE
Confidence 3455788888998888888864322 1333332 22234545555 5555578888888899888776
Q ss_pred ee
Q 028827 187 TA 188 (203)
Q Consensus 187 TV 188 (203)
+-
T Consensus 104 Dg 105 (286)
T 1gvf_A 104 DG 105 (286)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 57
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=50.46 E-value=14 Score=30.74 Aligned_cols=86 Identities=16% Similarity=0.164 Sum_probs=48.6
Q ss_pred CcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEec-CCCCC----CHHHHHhhcC----CceeEEEeeeCCHHH
Q 028827 98 DYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLS-FTSSS----SIEEVAASCN----AVRFYQLYVFKKRDI 168 (203)
Q Consensus 98 G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~ls-s~ss~----sleeia~~~~----~~~w~Qly~~~d~~~ 168 (203)
-..+..|+.+-.+.+.. .+-...+.++-++.|+-.++. ...+. -+|.++...+ .|.|- +|+
T Consensus 59 A~~LGIpl~~v~~~g~~---~~e~e~l~~~l~~~~i~~vv~Gdi~s~yqr~r~e~vc~~~gl~~~~PLW~-----~d~-- 128 (237)
T 3rjz_A 59 ARALGIPLVKGFTQGEK---EKEVEDLKRVLSGLKIQGIVAGALASKYQRKRIEKVAKELGLEVYTPAWG-----RDA-- 128 (237)
T ss_dssp HHHHTCCEEEEEC---------CHHHHHHHHTTSCCSEEECC---CCSHHHHHHHHHHHTTCEEECSSSS-----CCH--
T ss_pred HHHcCCCEEEEECCCCc---hHHHHHHHHHHHhcCCcEEEECCcchHHHHHHHHHHHHHcCCEEEccccC-----CCH--
Confidence 34455677776654321 112355666666667755543 23332 2456665553 34442 243
Q ss_pred HHHHHHHHHHcCCcEEEEeecCCCCC
Q 028827 169 AATLVQRAERNGFKALVLTADTPRLG 194 (203)
Q Consensus 169 ~~~ll~rAe~aG~~AlvvTVD~p~~g 194 (203)
.++++...++|++|+++.||+..++
T Consensus 129 -~~Ll~e~i~~G~~aiiv~v~~~gL~ 153 (237)
T 3rjz_A 129 -KEYMRELLNLGFKIMVVGVSAYGLD 153 (237)
T ss_dssp -HHHHHHHHHTTCEEEEEEEESTTCC
T ss_pred -HHHHHHHHHCCCEEEEEEEecCCCC
Confidence 4677888889999999999987664
No 58
>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi}
Probab=50.43 E-value=18 Score=30.51 Aligned_cols=70 Identities=17% Similarity=0.094 Sum_probs=44.8
Q ss_pred HHHHHHHHhcCC--eEEecCCCCCCHHHHHhhcCCceeEEEee-------------------------------------
Q 028827 122 VATARAAASCNT--IMVLSFTSSSSIEEVAASCNAVRFYQLYV------------------------------------- 162 (203)
Q Consensus 122 ~a~AraA~~~gi--~~~lss~ss~sleeia~~~~~~~w~Qly~------------------------------------- 162 (203)
..+++.-.+.|. ..+++|+....++.+.+..|...-.+|+.
T Consensus 168 ~~v~~~l~~~~~~~~v~i~SF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 247 (313)
T 3l12_A 168 AAVLADVRRYRMEPRTVMHSFDWALLGECRRQAPDLPTSYLSQLPENADDPGEDSAKPVGPDYDRMTESLPQAVASAGGQ 247 (313)
T ss_dssp HHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCTTSCEEEEECCCC-------------CCCTTTCCSCHHHHHHHHTCS
T ss_pred HHHHHHHHHcCCCCCEEEEcCCHHHHHHHHHHCCCCcEEEEeccccccccccccccccccccchhccccHHHHHHHhCCc
Confidence 455555555553 36777777777777777665432222221
Q ss_pred ---eCCHHHHHHHHHHHHHcCCcEEEEeecCC
Q 028827 163 ---FKKRDIAATLVQRAERNGFKALVLTADTP 191 (203)
Q Consensus 163 ---~~d~~~~~~ll~rAe~aG~~AlvvTVD~p 191 (203)
+.-..++.++|++|.++|.+..+.|||.+
T Consensus 248 ~~~~~~~~~~~~~v~~~~~~Gl~V~~WTVn~~ 279 (313)
T 3l12_A 248 LWCPYFLDVTPELVAEAHDLGLIVLTWTVNEP 279 (313)
T ss_dssp EEEEBGGGCCHHHHHHHHHTTCEEEEBCCCSH
T ss_pred EEecchhcCCHHHHHHHHHCCCEEEEEcCCCH
Confidence 11123346889999999999999999975
No 59
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=49.57 E-value=32 Score=30.95 Aligned_cols=39 Identities=26% Similarity=0.416 Sum_probs=31.3
Q ss_pred hhcccccccccc-CCCCCCcceeecC-cccCcceEeccccc
Q 028827 74 FHRITFRPRILV-DVSRIDLSTTILD-YKISAPIIIAPTAL 112 (203)
Q Consensus 74 f~~i~L~pRvL~-dv~~~dtst~l~G-~~~s~Pi~iaP~g~ 112 (203)
|+++.|.|..-. ..+++++++++-+ ..+..||+.+||..
T Consensus 17 ~dd~~~~p~~~~~~~~~v~l~t~lt~~l~l~~PIi~a~m~~ 57 (486)
T 2cu0_A 17 FDDVLLIPQATEVEPKDVDVSTRITPNVKLNIPILSAAMDT 57 (486)
T ss_dssp GGGEEECCCCCSSCSTTCBCCEEEETTEEESSSEEECCCTT
T ss_pred ccCEEEcCCcCCCCcceEEEEeeecCCcccccceEEcccee
Confidence 899999998644 3467899998854 68899999999863
No 60
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=49.02 E-value=40 Score=30.80 Aligned_cols=107 Identities=13% Similarity=0.130 Sum_probs=57.9
Q ss_pred hhcccccccccc-CCCCCCcceeec-CcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHH--
Q 028827 74 FHRITFRPRILV-DVSRIDLSTTIL-DYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVA-- 149 (203)
Q Consensus 74 f~~i~L~pRvL~-dv~~~dtst~l~-G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia-- 149 (203)
|+++.|.|..-. .-+++|++|.|- +..+..||+-|||... -|..+|-+-++.|-.-++. .+.++++-+
T Consensus 37 ~~d~~~~p~~~~~~~~~~~~~t~lt~~i~l~iPivsa~Mdtv------Te~~lAia~a~~GgiGvIh--~~~~~~~q~~~ 108 (511)
T 3usb_A 37 FDDVLLVPAKSDVLPREVSVKTVLSESLQLNIPLISAGMDTV------TEADMAIAMARQGGLGIIH--KNMSIEQQAEQ 108 (511)
T ss_dssp GGGEEECCCCCCCCTTTSBCCEEEETTEEESSSEEECSCTTT------CSHHHHHHHHHHTCEEEEC--SSSCHHHHHHH
T ss_pred eEEEEEECCcccccccceEeeeEeecccccCCCccccCchhh------cHHHHHHHHHhcCCceeec--ccCCHHHHHHH
Confidence 889999997422 124578888765 4578899999997532 1223333333334333343 244555432
Q ss_pred --hhc-C-CceeEE-EeeeCCHHHHHHHHHHHHHcCCcEEEEeec
Q 028827 150 --ASC-N-AVRFYQ-LYVFKKRDIAATLVQRAERNGFKALVLTAD 189 (203)
Q Consensus 150 --~~~-~-~~~w~Q-ly~~~d~~~~~~ll~rAe~aG~~AlvvTVD 189 (203)
+.- . ....-. +.+.. ..-+.+.++...+.|+..+.|+=+
T Consensus 109 V~~V~~~~~~m~~d~v~l~~-~~tv~ea~~~m~~~~~s~~pVvd~ 152 (511)
T 3usb_A 109 VDKVKRSESGVISDPFFLTP-EHQVYDAEHLMGKYRISGVPVVNN 152 (511)
T ss_dssp HHHHHTSSSCSSSSCCCBCT-TSBHHHHHHHHHHHCCSEEEEESC
T ss_pred HHHhhccccccccCCEEECC-CCCHHHHHHHHHHcCCcEEEEEec
Confidence 211 1 100001 12222 334456666677889999888643
No 61
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=48.65 E-value=65 Score=27.31 Aligned_cols=87 Identities=16% Similarity=0.073 Sum_probs=54.9
Q ss_pred cceEeccccc-hhccCchHHHHHHHHHHhcCCeEEe--cC---CCCCCHHHH---H----hhcC--CceeEEEeeeCCHH
Q 028827 103 APIIIAPTAL-HKLANPEGEVATARAAASCNTIMVL--SF---TSSSSIEEV---A----ASCN--AVRFYQLYVFKKRD 167 (203)
Q Consensus 103 ~Pi~iaP~g~-~~l~hp~gE~a~AraA~~~gi~~~l--ss---~ss~sleei---a----~~~~--~~~w~Qly~~~d~~ 167 (203)
.|.++.|+-- .+-.+.++-..+++---+.|+--.+ || +.+.+.||- . ++.. -+.+..+- .+-.
T Consensus 16 ~~a~vTPf~~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~~~grvpViaGvg--~~t~ 93 (316)
T 3e96_A 16 SGIPITPFRKSDGSIDWHHYKETVDRIVDNGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEYVHGRALVVAGIG--YATS 93 (316)
T ss_dssp EECCCCCBCTTTCCBCHHHHHHHHHHHHTTTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEEC--SSHH
T ss_pred EEeeeCCccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEEeC--cCHH
Confidence 3556667644 4445666767788777788875443 33 233455543 2 2223 24455553 3778
Q ss_pred HHHHHHHHHHHcCCcEEEEeecCCCC
Q 028827 168 IAATLVQRAERNGFKALVLTADTPRL 193 (203)
Q Consensus 168 ~~~~ll~rAe~aG~~AlvvTVD~p~~ 193 (203)
.+.++.+.|+++|++++++. +|..
T Consensus 94 ~ai~la~~A~~~Gadavlv~--~P~y 117 (316)
T 3e96_A 94 TAIELGNAAKAAGADAVMIH--MPIH 117 (316)
T ss_dssp HHHHHHHHHHHHTCSEEEEC--CCCC
T ss_pred HHHHHHHHHHhcCCCEEEEc--CCCC
Confidence 88899999999999999986 4544
No 62
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica}
Probab=48.57 E-value=18 Score=29.56 Aligned_cols=58 Identities=12% Similarity=0.074 Sum_probs=36.2
Q ss_pred EEecCCCCCCHHHHHhhcCCceeEEEe-------------------eeCCHHHHHHHHHHHHHcCCcEEEEeecCCC
Q 028827 135 MVLSFTSSSSIEEVAASCNAVRFYQLY-------------------VFKKRDIAATLVQRAERNGFKALVLTADTPR 192 (203)
Q Consensus 135 ~~lss~ss~sleeia~~~~~~~w~Qly-------------------~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p~ 192 (203)
.+++|+....++.+.+..|...-..|+ .+....++.++++++.++|.+..+.|||.+.
T Consensus 146 vii~SF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~v~~~~~~G~~v~~WTvn~~~ 222 (252)
T 3qvq_A 146 LLFSSFNYFALVSAKALWPEIARGYNVSAIPSAWQERLEHLDCAGLHIHQSFFDVQQVSDIKAAGYKVLAFTINDES 222 (252)
T ss_dssp EEEEESCHHHHHHHHHHCTTSCEEEECSSCCTTHHHHHHHHTCSEEEEEGGGCCHHHHHHHHHTTCEEEEECCCCHH
T ss_pred EEEEeCCHHHHHHHHHHCCCCcEEEEEecCchhHHHHHHHcCCeEEecchhhCCHHHHHHHHHCCCEEEEEcCCCHH
Confidence 566666666666666655432111122 1112234567899999999999999999653
No 63
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=48.27 E-value=30 Score=31.43 Aligned_cols=39 Identities=15% Similarity=0.312 Sum_probs=29.5
Q ss_pred hhccccccccccCC-CCCCcceeec-CcccCcceEeccccc
Q 028827 74 FHRITFRPRILVDV-SRIDLSTTIL-DYKISAPIIIAPTAL 112 (203)
Q Consensus 74 f~~i~L~pRvL~dv-~~~dtst~l~-G~~~s~Pi~iaP~g~ 112 (203)
|+++.|.|..-.-. +++|++|.|- +..+..|++.|||..
T Consensus 12 ~~d~~~~p~~~~~~~~~~~~~t~lt~~i~l~iPivsa~M~t 52 (490)
T 4avf_A 12 FDDVLLIPGYSEVLPKDVSLKTRLTRGIELNIPLVSAAMDT 52 (490)
T ss_dssp GGGEEECCCCBCSCGGGSCCCEEEETTEEESSSEEECSCTT
T ss_pred cceEEEeCCCCcccccceeeecccccCcccCCCccccchhh
Confidence 89999999653311 3588888875 678899999999753
No 64
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=48.26 E-value=90 Score=26.05 Aligned_cols=82 Identities=15% Similarity=0.030 Sum_probs=51.9
Q ss_pred ceEeccccchhccCchHHHHHHHHHHhcCCe--EEecCC---CCCCHHHHHh-------hcCC--ceeEEEeeeCCHHHH
Q 028827 104 PIIIAPTALHKLANPEGEVATARAAASCNTI--MVLSFT---SSSSIEEVAA-------SCNA--VRFYQLYVFKKRDIA 169 (203)
Q Consensus 104 Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~--~~lss~---ss~sleeia~-------~~~~--~~w~Qly~~~d~~~~ 169 (203)
|.++.|+- .+-.+.++-..+++---+.|+- +.+||- .+.+.||-.+ +..+ +.+.++- ..+-..+
T Consensus 7 ~a~vTPf~-dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~a 84 (294)
T 2ehh_A 7 VALITPFK-EGEVDYEALGNLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAAGRIKVIAGTG-GNATHEA 84 (294)
T ss_dssp EECCCCEE-TTEECHHHHHHHHHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECC-CSCHHHH
T ss_pred eeeecCcC-CCCcCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CCCHHHH
Confidence 55667776 5555667777888877778874 344553 3445554322 2232 2233321 2356778
Q ss_pred HHHHHHHHHcCCcEEEEe
Q 028827 170 ATLVQRAERNGFKALVLT 187 (203)
Q Consensus 170 ~~ll~rAe~aG~~AlvvT 187 (203)
.++.+.|+++|++++++.
T Consensus 85 i~la~~A~~~Gadavlv~ 102 (294)
T 2ehh_A 85 VHLTAHAKEVGADGALVV 102 (294)
T ss_dssp HHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHhcCCCEEEEC
Confidence 889999999999999887
No 65
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=47.51 E-value=34 Score=28.88 Aligned_cols=34 Identities=21% Similarity=0.165 Sum_probs=28.9
Q ss_pred chHHHHHHHHHHhcCCeEEecCCCCCCHHHHHhh
Q 028827 118 PEGEVATARAAASCNTIMVLSFTSSSSIEEVAAS 151 (203)
Q Consensus 118 p~gE~a~AraA~~~gi~~~lss~ss~sleeia~~ 151 (203)
.+|-..+.+.+++.|++++..-+...+++.+++.
T Consensus 88 ~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~ 121 (276)
T 1vs1_A 88 LEGLKLLRRAGDEAGLPVVTEVLDPRHVETVSRY 121 (276)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECCCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEecCCHHHHHHHHHh
Confidence 5777899999999999999998888888777654
No 66
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=47.26 E-value=54 Score=21.49 Aligned_cols=30 Identities=33% Similarity=0.438 Sum_probs=13.6
Q ss_pred eeEEEeeeCCHHHHHHHHHHHHHcCCcEEE
Q 028827 156 RFYQLYVFKKRDIAATLVQRAERNGFKALV 185 (203)
Q Consensus 156 ~w~Qly~~~d~~~~~~ll~rAe~aG~~Alv 185 (203)
.|+|+-.+.+++..+.+.++....|+.+.+
T Consensus 10 ~~vQvGaf~~~~~A~~~~~~L~~~g~~~~i 39 (79)
T 1x60_A 10 YKVQIGAFKVKANADSLASNAEAKGFDSIV 39 (79)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHHTCCEEE
T ss_pred EEEEEEEcCCHHHHHHHHHHHHhCCCCeEE
Confidence 444444444444444444444444444433
No 67
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=46.89 E-value=83 Score=26.42 Aligned_cols=82 Identities=13% Similarity=0.118 Sum_probs=51.0
Q ss_pred ceEeccccchhccCchHHHHHHHHHHhcCCeEE--ecCC---CCCCHHHHHh-------hcCC---ceeEEEeeeCCHHH
Q 028827 104 PIIIAPTALHKLANPEGEVATARAAASCNTIMV--LSFT---SSSSIEEVAA-------SCNA---VRFYQLYVFKKRDI 168 (203)
Q Consensus 104 Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~--lss~---ss~sleeia~-------~~~~---~~w~Qly~~~d~~~ 168 (203)
|.++.|+ -.+-.+.++-..+++---+.|+--. +||- .+.+.||-.+ +..+ +.+.++- ..+-..
T Consensus 14 ~a~vTPf-~dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~rvpviaGvg-~~~t~~ 91 (301)
T 3m5v_A 14 TALITPF-KNGKVDEQSYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAG-SNATHE 91 (301)
T ss_dssp EECCCCE-ETTEECHHHHHHHHHHHHHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEECC-CSSHHH
T ss_pred EeeecCc-CCCCCCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCCeEEEeCC-CCCHHH
Confidence 5556676 4444566777778887777887443 3442 3345554322 2233 2233221 236778
Q ss_pred HHHHHHHHHHcCCcEEEEe
Q 028827 169 AATLVQRAERNGFKALVLT 187 (203)
Q Consensus 169 ~~~ll~rAe~aG~~AlvvT 187 (203)
+.++.++|+++|++++++.
T Consensus 92 ai~la~~a~~~Gadavlv~ 110 (301)
T 3m5v_A 92 AVGLAKFAKEHGADGILSV 110 (301)
T ss_dssp HHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEc
Confidence 8899999999999999987
No 68
>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*
Probab=46.24 E-value=61 Score=36.42 Aligned_cols=105 Identities=20% Similarity=0.267 Sum_probs=61.4
Q ss_pred cccccccCC-CC--CCcc-eeecCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHH------
Q 028827 79 FRPRILVDV-SR--IDLS-TTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEV------ 148 (203)
Q Consensus 79 L~pRvL~dv-~~--~dts-t~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleei------ 148 (203)
+.|+..+.- .. .+|. +.+|| ..||+.+||+... .. -.+|.|..++|-.-.++.....+.+++
T Consensus 403 f~P~l~~~~~g~~~~~t~~~~~lg---~~PIi~a~M~~~~-s~----~~LaaAVs~AGglG~l~~~g~~~~~~l~~~i~~ 474 (3089)
T 3zen_D 403 YAPTVVKLPDGSVKLETKFTRLTG---RSPILLAGMTPTT-VD----AKIVAAAANAGHWAELAGGGQVTEQIFNDRIAE 474 (3089)
T ss_dssp GCCEEEECTTCCEEEECHHHHHHS---SCSEEECCCHHHH-TS----HHHHHHHHHTTCEEEECSTTCCSHHHHHHHHHH
T ss_pred cCCcccccCCCcccccchhhhhcC---CCCEEeCCCcCCc-CC----HHHHHHHHhCCCceeecCCCCCCHHHHHHHHHH
Confidence 667665532 22 2332 45788 7799999997532 12 257778888888888865544344433
Q ss_pred -HhhcC-C-ce-eEEEeeeCCH-H---HHHHHHHHHHHcC--CcEEEEeecCC
Q 028827 149 -AASCN-A-VR-FYQLYVFKKR-D---IAATLVQRAERNG--FKALVLTADTP 191 (203)
Q Consensus 149 -a~~~~-~-~~-w~Qly~~~d~-~---~~~~ll~rAe~aG--~~AlvvTVD~p 191 (203)
.+..+ + +. .--+|..... + -.+++++.+.++| +++|+++-|.|
T Consensus 475 ~r~~~~~~~p~~vNl~~~~p~~~~~~~g~~~~~~~~~~~g~~vdgv~~~aG~P 527 (3089)
T 3zen_D 475 LETLLEPGRAIQFNTLFLDPYLWKLQVGGKRLVQRARQSGAPIDGLVVSAGIP 527 (3089)
T ss_dssp HHHHSCTTCCCEEEEECSCHHHHHHHHHHHHHHHHHHHTTCSCCEEEEESSCC
T ss_pred HHHhcCCCCceeechhhcChhhhhhccCHHHHHHHHHHcCCCceEEEEeCCCC
Confidence 22232 2 11 1123332211 0 0157899999999 66799888877
No 69
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=46.10 E-value=26 Score=29.33 Aligned_cols=40 Identities=8% Similarity=-0.148 Sum_probs=29.3
Q ss_pred HHhhcCCceeEEEeeeCCHHHHHHHHHHHHHcC-CcEEEEe
Q 028827 148 VAASCNAVRFYQLYVFKKRDIAATLVQRAERNG-FKALVLT 187 (203)
Q Consensus 148 ia~~~~~~~w~Qly~~~d~~~~~~ll~rAe~aG-~~AlvvT 187 (203)
|.++.+-+.+.-+....|.+...++.++++++| +++|.++
T Consensus 155 vr~~~~~Pv~vK~~~~~~~~~~~~~a~~~~~aG~~d~i~v~ 195 (314)
T 2e6f_A 155 VSLAYGLPFGVKMPPYFDIAHFDTAAAVLNEFPLVKFVTCV 195 (314)
T ss_dssp HHHHHCSCEEEEECCCCCHHHHHHHHHHHHTCTTEEEEEEC
T ss_pred HHHhcCCCEEEEECCCCCHHHHHHHHHHHHhcCCceEEEEe
Confidence 333334456666666567778888899999999 9999865
No 70
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=45.71 E-value=86 Score=23.48 Aligned_cols=61 Identities=13% Similarity=0.083 Sum_probs=38.1
Q ss_pred HhcCCeEEecCCCCCCHHHHHhh-cCCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeec
Q 028827 129 ASCNTIMVLSFTSSSSIEEVAAS-CNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTAD 189 (203)
Q Consensus 129 ~~~gi~~~lss~ss~sleeia~~-~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD 189 (203)
...|.+..+-+.....+.+.... .++...+=+-..+.-..+.+.++.|++.|++.|++|=.
T Consensus 62 ~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~ 123 (187)
T 3sho_A 62 NSLGIRTTVLTEGGSTLTITLANLRPTDLMIGVSVWRYLRDTVAALAGAAERGVPTMALTDS 123 (187)
T ss_dssp HHTTCCEEEECCCTHHHHHHHHTCCTTEEEEEECCSSCCHHHHHHHHHHHHTTCCEEEEESC
T ss_pred HhcCCCEEEecCCchhHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEeCC
Confidence 44777766644222223222222 24444444555666677888999999999999999954
No 71
>1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis, PRPP, structural genomics, PSI, protei structure initiative; HET: AMP HIS; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1 d.58.5.3 PDB: 1nh7_A*
Probab=45.43 E-value=41 Score=29.07 Aligned_cols=59 Identities=12% Similarity=0.098 Sum_probs=45.3
Q ss_pred HhcCCeEEecCCCCCCHHHHHhhcC-----------CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 028827 129 ASCNTIMVLSFTSSSSIEEVAASCN-----------AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 129 ~~~gi~~~lss~ss~sleeia~~~~-----------~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
.+.+-.++.=+.....++++.+..| ...|+.+...-+++...+++.+.+++||++|+++
T Consensus 228 ~A~~~~~l~~nvp~~~l~~v~~~lPg~~~PTVspL~~~~wvAV~~vv~~~~~~~~~~~Lk~~GA~~Ilv~ 297 (304)
T 1nh8_A 228 FGQQYLMLDYDCPRSALKKATAITPGLESPTIAPLADPDWVAIRALVPRRDVNGIMDELAAIGAKAILAS 297 (304)
T ss_dssp HHTTEEEEEEEEEGGGHHHHHHHCCCSSSCEEEECSSTTEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEE
T ss_pred HhcceEEEEEeCCHHHHHHHHHhccCCCCCeeeecCCCCeEEEEEEEcHHHHHHHHHHHHHcCCCeEEEe
Confidence 3344455555566678999988754 1358888888889999999999999999999876
No 72
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=44.91 E-value=94 Score=25.85 Aligned_cols=82 Identities=21% Similarity=0.104 Sum_probs=51.3
Q ss_pred ceEeccccchhccCchHHHHHHHHHHhcCCe--EEecCC---CCCCHHHHH-------hhcCC--ceeEEEeeeCCHHHH
Q 028827 104 PIIIAPTALHKLANPEGEVATARAAASCNTI--MVLSFT---SSSSIEEVA-------ASCNA--VRFYQLYVFKKRDIA 169 (203)
Q Consensus 104 Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~--~~lss~---ss~sleeia-------~~~~~--~~w~Qly~~~d~~~~ 169 (203)
|.++.|+- .+-.+.++-..+++---+.|+- +.+||- .+.+.||-. ++..+ +.+.++- ..+-..+
T Consensus 7 ~a~vTPf~-dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg-~~~t~~a 84 (289)
T 2yxg_A 7 PAIITPFK-NKEVDFDGLEENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVNGRVQVIAGAG-SNCTEEA 84 (289)
T ss_dssp EBCCCCEE-TTEECHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECC-CSSHHHH
T ss_pred eeeecCcC-CCCcCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCC-CCCHHHH
Confidence 55566766 5555667777777777777774 345553 334555432 22233 2222221 2356778
Q ss_pred HHHHHHHHHcCCcEEEEe
Q 028827 170 ATLVQRAERNGFKALVLT 187 (203)
Q Consensus 170 ~~ll~rAe~aG~~AlvvT 187 (203)
.++.+.|+++|++++++.
T Consensus 85 i~la~~a~~~Gadavlv~ 102 (289)
T 2yxg_A 85 IELSVFAEDVGADAVLSI 102 (289)
T ss_dssp HHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHhcCCCEEEEC
Confidence 889999999999999887
No 73
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=44.20 E-value=1.1e+02 Score=26.23 Aligned_cols=84 Identities=14% Similarity=0.088 Sum_probs=51.4
Q ss_pred cceEeccccchhccCchHHHHHHHHHHhcCC--eEEecCC---CCCCHHHHH-------hhcCC--ceeEEEeeeCCHHH
Q 028827 103 APIIIAPTALHKLANPEGEVATARAAASCNT--IMVLSFT---SSSSIEEVA-------ASCNA--VRFYQLYVFKKRDI 168 (203)
Q Consensus 103 ~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi--~~~lss~---ss~sleeia-------~~~~~--~~w~Qly~~~d~~~ 168 (203)
.|.++.|+--.+-.+.++-..+++--.+.|+ .+++||- .+.+.||-. ++..+ +.+.++- ..+-..
T Consensus 36 ~~alvTPF~~dg~ID~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg-~~st~e 114 (343)
T 2v9d_A 36 IPPVSTIFTADGQLDKPGTAALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTG-GTNARE 114 (343)
T ss_dssp CCEECCCBCTTSSBCHHHHHHHHHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-SSCHHH
T ss_pred EEeeECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CCCHHH
Confidence 3666677643333466666777777677776 3455553 334555432 22232 3333331 235677
Q ss_pred HHHHHHHHHHcCCcEEEEe
Q 028827 169 AATLVQRAERNGFKALVLT 187 (203)
Q Consensus 169 ~~~ll~rAe~aG~~AlvvT 187 (203)
+.++.+.|+++|++++++.
T Consensus 115 ai~la~~A~~~Gadavlv~ 133 (343)
T 2v9d_A 115 TIELSQHAQQAGADGIVVI 133 (343)
T ss_dssp HHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEC
Confidence 8899999999999999887
No 74
>1y2i_A Hypothetical protein S0862; structural genomics, pentamer, protein structure initiative, PSI, midwest center for structural genomics; 2.30A {Shigella flexneri 2a str} SCOP: d.230.5.1
Probab=43.92 E-value=16 Score=27.82 Aligned_cols=29 Identities=24% Similarity=0.231 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHcCCcEEE-EeecCCCCC
Q 028827 166 RDIAATLVQRAERNGFKALV-LTADTPRLG 194 (203)
Q Consensus 166 ~~~~~~ll~rAe~aG~~Alv-vTVD~p~~g 194 (203)
++.+.+|.++|++.|+.||+ |.+|+...|
T Consensus 83 ~~Al~rm~~~A~~lGAnAVVGvr~d~~~i~ 112 (133)
T 1y2i_A 83 EIAFEELGSQARALGADAVVGIDIDYETVG 112 (133)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEEEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEeeeec
Confidence 56778899999999999965 666655443
No 75
>3mz2_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics; HET: MSE PE4; 1.55A {Parabacteroides distasonis}
Probab=43.64 E-value=52 Score=27.63 Aligned_cols=29 Identities=14% Similarity=0.137 Sum_probs=24.2
Q ss_pred eCCHHHHHHHHHHHHHcCCcEEEEeecCC
Q 028827 163 FKKRDIAATLVQRAERNGFKALVLTADTP 191 (203)
Q Consensus 163 ~~d~~~~~~ll~rAe~aG~~AlvvTVD~p 191 (203)
+.....+.++|++|.+.|.+..+.||+++
T Consensus 211 ~~~~~~~~~~V~~ah~~G~~V~vWTv~t~ 239 (292)
T 3mz2_A 211 PKITPEVREVIDMLHERGVMCMISTAPSD 239 (292)
T ss_dssp SSCCHHHHHHHHHHHHTTBCEEEECTTTG
T ss_pred ccccccCHHHHHHHHHCCCEEEEEeCCCc
Confidence 34456778999999999999999998764
No 76
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=43.30 E-value=86 Score=26.42 Aligned_cols=82 Identities=15% Similarity=0.133 Sum_probs=52.0
Q ss_pred ceEeccccchhccCchHHHHHHHHHHhcCCe--EEecC---CCCCCHHHHH-------hhcCC--ceeEEEeeeCCHHHH
Q 028827 104 PIIIAPTALHKLANPEGEVATARAAASCNTI--MVLSF---TSSSSIEEVA-------ASCNA--VRFYQLYVFKKRDIA 169 (203)
Q Consensus 104 Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~--~~lss---~ss~sleeia-------~~~~~--~~w~Qly~~~d~~~~ 169 (203)
|.++.|+- .+-.+.++-..+++--.+.|+- +++|| +.+.+.||-. ++..+ +.+.++- ..+-..+
T Consensus 19 ~a~vTPf~-dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg-~~st~~a 96 (306)
T 1o5k_A 19 TAIVTPFK-NGELDLESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAG-TNSTEKT 96 (306)
T ss_dssp EECCCCEE-TTEECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECC-CSCHHHH
T ss_pred eeeecCcC-CCCcCHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEcCC-CccHHHH
Confidence 55666766 5555667777788777777874 34454 3344555432 22232 3333331 2356778
Q ss_pred HHHHHHHHHcCCcEEEEe
Q 028827 170 ATLVQRAERNGFKALVLT 187 (203)
Q Consensus 170 ~~ll~rAe~aG~~AlvvT 187 (203)
.++.+.|+++|++++++.
T Consensus 97 i~la~~A~~~Gadavlv~ 114 (306)
T 1o5k_A 97 LKLVKQAEKLGANGVLVV 114 (306)
T ss_dssp HHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHhcCCCEEEEC
Confidence 889999999999999887
No 77
>2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A
Probab=43.19 E-value=20 Score=29.79 Aligned_cols=72 Identities=13% Similarity=0.085 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhcCC---------eEEecCCCCCCHHHHHhhcCCceeEEEeee-----------------------CCHH
Q 028827 120 GEVATARAAASCNT---------IMVLSFTSSSSIEEVAASCNAVRFYQLYVF-----------------------KKRD 167 (203)
Q Consensus 120 gE~a~AraA~~~gi---------~~~lss~ss~sleeia~~~~~~~w~Qly~~-----------------------~d~~ 167 (203)
-+..+++.-++.|. ..+++|+....++.+.+..|.....+|+.. .-..
T Consensus 149 ~~~~v~~~l~~~~~~~~~~~~~~~vii~SF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 228 (287)
T 2oog_A 149 MEEQLLASLKKHHLLNNNKLKNGHVMIQSFSDESLKKIHRQNKHVPLVKLVDKGELQQFNDQRLKEIRSYAIGLGPDYTD 228 (287)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHTTSEEEEESCHHHHHHHHHHCTTSCEEEEECTTTGGGCCHHHHHHHHTTCSEEEEBGGG
T ss_pred HHHHHHHHHHHcCCcccccCCCCCEEEEeCCHHHHHHHHHhCCCCcEEEEecCCcccccCHHHHHHHhhhheEEcccHhh
Confidence 34556666666654 367777776677777766654333333321 1112
Q ss_pred HHHHHHHHHHHcCCcEEEEeecCC
Q 028827 168 IAATLVQRAERNGFKALVLTADTP 191 (203)
Q Consensus 168 ~~~~ll~rAe~aG~~AlvvTVD~p 191 (203)
+..++++++.++|.+..+.|||.+
T Consensus 229 ~~~~~v~~~~~~G~~v~~wTvn~~ 252 (287)
T 2oog_A 229 LTEQNTHHLKDLGFIVHPYTVNEK 252 (287)
T ss_dssp CCHHHHHHHHHTTCEECCBCCCSH
T ss_pred cCHHHHHHHHHCCCeEEEEeCCCH
Confidence 346788999999999999998864
No 78
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=43.10 E-value=1e+02 Score=25.59 Aligned_cols=82 Identities=13% Similarity=0.035 Sum_probs=52.7
Q ss_pred ceEeccccchhccCchHHHHHHHHHHhcCCeE--EecC---CCCCCHHHHH-------hhcCC--ceeEEEeeeCCHHHH
Q 028827 104 PIIIAPTALHKLANPEGEVATARAAASCNTIM--VLSF---TSSSSIEEVA-------ASCNA--VRFYQLYVFKKRDIA 169 (203)
Q Consensus 104 Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~--~lss---~ss~sleeia-------~~~~~--~~w~Qly~~~d~~~~ 169 (203)
|.++.|+--.+ .+.++-..+++---+.|+-- .+|| +.+.+.||-. ++..+ +.+.++- ..+-..+
T Consensus 8 ~a~vTPf~~dg-iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg-~~~t~~a 85 (291)
T 3a5f_A 8 VAIITPFTNTG-VDFDKLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVNKRIPVIAGTG-SNNTAAS 85 (291)
T ss_dssp EECCCCBCSSS-BCHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSSHHHH
T ss_pred eeeEcCcCCCC-cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCC-cccHHHH
Confidence 55667775445 67777788888777788743 4454 3344555432 22232 3333331 2356778
Q ss_pred HHHHHHHHHcCCcEEEEe
Q 028827 170 ATLVQRAERNGFKALVLT 187 (203)
Q Consensus 170 ~~ll~rAe~aG~~AlvvT 187 (203)
.++.+.|+++|++++++.
T Consensus 86 i~la~~a~~~Gadavlv~ 103 (291)
T 3a5f_A 86 IAMSKWAESIGVDGLLVI 103 (291)
T ss_dssp HHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHhcCCCEEEEc
Confidence 899999999999999887
No 79
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=43.07 E-value=61 Score=26.38 Aligned_cols=86 Identities=16% Similarity=0.217 Sum_probs=57.6
Q ss_pred ceeecCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCC-CCHHHHHhhcCCceeEEEeeeCCHHHHHH
Q 028827 93 STTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSS-SSIEEVAASCNAVRFYQLYVFKKRDIAAT 171 (203)
Q Consensus 93 st~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss-~sleeia~~~~~~~w~Qly~~~d~~~~~~ 171 (203)
+..++-+.++.|+.-=++.+. |--.++.++-+..+-..+++.... ..++.+.+..+-. ++.|...+.+..++
T Consensus 73 ta~~Lr~~~~iPVV~I~vs~~-----Dil~aL~~a~~~~~kIavVg~~~~~~~~~~i~~ll~~~--i~~~~~~~~ee~~~ 145 (225)
T 2pju_A 73 NGAYLKSRLSVPVILIKPSGY-----DVLQFLAKAGKLTSSIGVVTYQETIPALVAFQKTFNLR--LDQRSYITEEDARG 145 (225)
T ss_dssp HHHHHHTTCSSCEEEECCCHH-----HHHHHHHHTTCTTSCEEEEEESSCCHHHHHHHHHHTCC--EEEEEESSHHHHHH
T ss_pred HHHHHHhhCCCCEEEecCCHH-----HHHHHHHHHHhhCCcEEEEeCchhhhHHHHHHHHhCCc--eEEEEeCCHHHHHH
Confidence 345566678889987665443 444666666554454455554332 3455666655522 36688899999999
Q ss_pred HHHHHHHcCCcEEE
Q 028827 172 LVQRAERNGFKALV 185 (203)
Q Consensus 172 ll~rAe~aG~~Alv 185 (203)
.|+++++.|+++||
T Consensus 146 ~i~~l~~~G~~vVV 159 (225)
T 2pju_A 146 QINELKANGTEAVV 159 (225)
T ss_dssp HHHHHHHTTCCEEE
T ss_pred HHHHHHHCCCCEEE
Confidence 99999999999876
No 80
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A
Probab=42.96 E-value=59 Score=27.47 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHcCCc--EEEEe
Q 028827 166 RDIAATLVQRAERNGFK--ALVLT 187 (203)
Q Consensus 166 ~~~~~~ll~rAe~aG~~--AlvvT 187 (203)
.+...+.+++|+++|.+ -|+++
T Consensus 162 ~~~l~~~i~~a~~~Gi~~~~IilD 185 (282)
T 1aj0_A 162 NRYFIEQIARCEQAGIAKEKLLLD 185 (282)
T ss_dssp HHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred HHHHHHHHHHHHHcCCChhhEEEe
Confidence 56778899999999998 78888
No 81
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=42.46 E-value=1.3e+02 Score=25.15 Aligned_cols=84 Identities=17% Similarity=0.024 Sum_probs=51.6
Q ss_pred ceEeccccchhccCchHHHHHHHHHHhcCCe--EEecCC---CCCCHHHHH-------hhcCC--ceeEEEeeeCCHHHH
Q 028827 104 PIIIAPTALHKLANPEGEVATARAAASCNTI--MVLSFT---SSSSIEEVA-------ASCNA--VRFYQLYVFKKRDIA 169 (203)
Q Consensus 104 Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~--~~lss~---ss~sleeia-------~~~~~--~~w~Qly~~~d~~~~ 169 (203)
|.++.|+--.+-.+.++-..+++---+.|+- +.+||- .+.+.||-. ++..+ +.+.++- ..+-..+
T Consensus 13 ~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~a 91 (297)
T 3flu_A 13 VALITPMNQDGSIHYEQLRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVPVIAGTG-ANNTVEA 91 (297)
T ss_dssp EECCCCBCTTSCBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSSHHHH
T ss_pred EeeeccCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEeCC-CcCHHHH
Confidence 5556676433334666667777777778874 344543 334555432 22232 3333331 2467888
Q ss_pred HHHHHHHHHcCCcEEEEee
Q 028827 170 ATLVQRAERNGFKALVLTA 188 (203)
Q Consensus 170 ~~ll~rAe~aG~~AlvvTV 188 (203)
.++.+.|+++|++++++..
T Consensus 92 i~la~~a~~~Gadavlv~~ 110 (297)
T 3flu_A 92 IALSQAAEKAGADYTLSVV 110 (297)
T ss_dssp HHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHcCCCEEEECC
Confidence 8999999999999998863
No 82
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=42.04 E-value=29 Score=30.78 Aligned_cols=32 Identities=13% Similarity=0.181 Sum_probs=18.5
Q ss_pred cceEeccccchhccCchHHHHHHHHHHhcCCeEEe
Q 028827 103 APIIIAPTALHKLANPEGEVATARAAASCNTIMVL 137 (203)
Q Consensus 103 ~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~l 137 (203)
.+++++|++.. ..+--..+|++++++|..++.
T Consensus 143 ~~~Iigpcsve---s~e~a~~~a~~~k~aGa~~vk 174 (385)
T 3nvt_A 143 PVFVFGPCSVE---SYEQVAAVAESIKAKGLKLIR 174 (385)
T ss_dssp CEEEEECSBCC---CHHHHHHHHHHHHHTTCCEEE
T ss_pred eEEEEEeCCcC---CHHHHHHHHHHHHHcCCCeEE
Confidence 47888887764 223335555555555555543
No 83
>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...
Probab=41.91 E-value=69 Score=27.32 Aligned_cols=23 Identities=13% Similarity=0.183 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHcCCc--EEEEee
Q 028827 166 RDIAATLVQRAERNGFK--ALVLTA 188 (203)
Q Consensus 166 ~~~~~~ll~rAe~aG~~--AlvvTV 188 (203)
.+...+++++|+++|++ -|+++-
T Consensus 181 ~~~l~~~i~~a~~~GI~~~~IilDP 205 (297)
T 1tx2_A 181 IADLYDSIKIAKDAGVRDENIILDP 205 (297)
T ss_dssp HHHHHHHHHHHHHTTCCGGGEEEEC
T ss_pred HHHHHHHHHHHHHcCCChhcEEEeC
Confidence 36677889999999998 788873
No 84
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=41.84 E-value=39 Score=28.55 Aligned_cols=34 Identities=6% Similarity=-0.010 Sum_probs=25.3
Q ss_pred CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 028827 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 154 ~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
-+.+.-+-...+.+.+.++.++++++|+++|.|+
T Consensus 212 ~Pv~vKi~~~~~~~~~~~~a~~l~~~Gvd~i~vs 245 (336)
T 1f76_A 212 VPIAVKIAPDLSEEELIQVADSLVRHNIDGVIAT 245 (336)
T ss_dssp CCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEEC
T ss_pred CceEEEecCCCCHHHHHHHHHHHHHcCCcEEEEe
Confidence 3555544434455677889999999999999987
No 85
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=41.00 E-value=1.3e+02 Score=25.18 Aligned_cols=84 Identities=10% Similarity=0.021 Sum_probs=52.5
Q ss_pred cceEeccccchhccCchHHHHHHHHHHhcCCe--EEecCC---CCCCHHHHH-------hhcCC--ceeEEEeeeCCHHH
Q 028827 103 APIIIAPTALHKLANPEGEVATARAAASCNTI--MVLSFT---SSSSIEEVA-------ASCNA--VRFYQLYVFKKRDI 168 (203)
Q Consensus 103 ~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~--~~lss~---ss~sleeia-------~~~~~--~~w~Qly~~~d~~~ 168 (203)
.|.++.|+--.+-.+.++-..+++--.+.|+- +++||- .+.+.||-. ++..+ +.+.++ -..+-..
T Consensus 20 ~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGv-g~~~t~~ 98 (304)
T 3l21_A 20 LTAMVTPFSGDGSLDTATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGA-GTYDTAH 98 (304)
T ss_dssp EEECCCCBCTTSCBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEEC-CCSCHHH
T ss_pred EEEEECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEeC-CCCCHHH
Confidence 35566676433434666667777777778874 444543 334555432 22232 333332 1346788
Q ss_pred HHHHHHHHHHcCCcEEEEe
Q 028827 169 AATLVQRAERNGFKALVLT 187 (203)
Q Consensus 169 ~~~ll~rAe~aG~~AlvvT 187 (203)
+.++.+.|+++|++++++.
T Consensus 99 ai~la~~a~~~Gadavlv~ 117 (304)
T 3l21_A 99 SIRLAKACAAEGAHGLLVV 117 (304)
T ss_dssp HHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEC
Confidence 8899999999999999987
No 86
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=40.63 E-value=98 Score=25.98 Aligned_cols=84 Identities=7% Similarity=-0.029 Sum_probs=51.2
Q ss_pred ceEeccccchhccCchHHHHHHHHHHhcCCeE--EecC---CCCCCHHHHH-------hhcCC--ceeEEEeeeCCHHHH
Q 028827 104 PIIIAPTALHKLANPEGEVATARAAASCNTIM--VLSF---TSSSSIEEVA-------ASCNA--VRFYQLYVFKKRDIA 169 (203)
Q Consensus 104 Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~--~lss---~ss~sleeia-------~~~~~--~~w~Qly~~~d~~~~ 169 (203)
|.++.|+--.+-.+.++-..+++--.+.|+-- ++|| +.+.+.||-. ++..+ +.+.++- ..+-..+
T Consensus 10 ~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~a 88 (300)
T 3eb2_A 10 PYLVSPVDAEGRVRADVMGRLCDDLIQAGVHGLTPLGSTGEFAYLGTAQREAVVRATIEAAQRRVPVVAGVA-STSVADA 88 (300)
T ss_dssp EBCCCCBCTTSCBCHHHHHHHHHHHHHTTCSCBBTTSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCBEEEEE-ESSHHHH
T ss_pred EEEeccCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCC-CCCHHHH
Confidence 55566764333345666677777776777643 3343 3344565432 22232 4444442 3457778
Q ss_pred HHHHHHHHHcCCcEEEEee
Q 028827 170 ATLVQRAERNGFKALVLTA 188 (203)
Q Consensus 170 ~~ll~rAe~aG~~AlvvTV 188 (203)
.++.+.|+++|++++++..
T Consensus 89 i~la~~a~~~Gadavlv~~ 107 (300)
T 3eb2_A 89 VAQAKLYEKLGADGILAIL 107 (300)
T ss_dssp HHHHHHHHHHTCSEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEcC
Confidence 8999999999999998864
No 87
>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} SCOP: c.1.18.0
Probab=40.21 E-value=33 Score=27.71 Aligned_cols=70 Identities=13% Similarity=0.036 Sum_probs=41.5
Q ss_pred HHHHHHHHhcCC--eEEecCCCCCCHHHHHhhcCCceeEEEeee---------------CCHH---HHHHHHHHHHHcCC
Q 028827 122 VATARAAASCNT--IMVLSFTSSSSIEEVAASCNAVRFYQLYVF---------------KKRD---IAATLVQRAERNGF 181 (203)
Q Consensus 122 ~a~AraA~~~gi--~~~lss~ss~sleeia~~~~~~~w~Qly~~---------------~d~~---~~~~ll~rAe~aG~ 181 (203)
..+++.-++.|. ..+++|+....++.+.+..|...-..|+.. -+.. .+.+++++|.++|.
T Consensus 118 ~~v~~~l~~~~~~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~ 197 (238)
T 3no3_A 118 RLSVQMVKRMKLAKRTDYISFNMDACKEFIRLCPKSEVSYLNGELSPMELKELGFTGLDYHYKVLQSHPDWVKDCKVLGM 197 (238)
T ss_dssp HHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCTTSCEEECSSCSCHHHHHHTTCCEEEEEHHHHHHSTTHHHHHHHTTC
T ss_pred HHHHHHHHHcCCcCCEEEEECCHHHHHHHHHHCCCCeEEEEeCCCCHHHHHHCCCceEeccHHhhhCCHHHHHHHHHCCC
Confidence 445555555554 356667766666666666553211111100 0111 23578999999999
Q ss_pred cEEEEeecCC
Q 028827 182 KALVLTADTP 191 (203)
Q Consensus 182 ~AlvvTVD~p 191 (203)
+..+.|||.+
T Consensus 198 ~v~~WTVn~~ 207 (238)
T 3no3_A 198 TSNVWTVDDP 207 (238)
T ss_dssp EEEEECCCSH
T ss_pred EEEEECCCCH
Confidence 9999999865
No 88
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=40.06 E-value=97 Score=25.88 Aligned_cols=57 Identities=12% Similarity=0.116 Sum_probs=44.0
Q ss_pred hcCCeEEecCCCCCCHHHHHhhcCCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEee
Q 028827 130 SCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTA 188 (203)
Q Consensus 130 ~~gi~~~lss~ss~sleeia~~~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTV 188 (203)
-.|+...+......+++++.+. +.+ ++=|.-..|..-+-.++|-|...|+++|+++=
T Consensus 96 ~qGv~a~~~~~~~~~l~~~~~~-~~~-~lvLd~v~dP~NlGaI~Rta~a~G~~~vil~~ 152 (277)
T 3nk6_A 96 KAKVFGIARVPRPARLADIAER-GGD-VVVLDGVKIVGNIGAIVRTSLALGAAGIVLVD 152 (277)
T ss_dssp -CCEEEEEECCCCCCHHHHHHH-CSC-EEEEESCCCHHHHHHHHHHHHHTTCSEEEEES
T ss_pred CCeEEEEEecCCCCCHHHHhcc-CCC-EEEEEcCCCcchHHHHHHHHHHcCCCEEEEcC
Confidence 3567767766545678888654 333 66677788999999999999999999999976
No 89
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=40.06 E-value=1.2e+02 Score=25.56 Aligned_cols=84 Identities=10% Similarity=-0.024 Sum_probs=51.6
Q ss_pred cceEeccccchhccCchHHHHHHHHHHhcCCe--EEecCC---CCCCHHHHH-------hhcCC-ceeEEEeeeCCHHHH
Q 028827 103 APIIIAPTALHKLANPEGEVATARAAASCNTI--MVLSFT---SSSSIEEVA-------ASCNA-VRFYQLYVFKKRDIA 169 (203)
Q Consensus 103 ~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~--~~lss~---ss~sleeia-------~~~~~-~~w~Qly~~~d~~~~ 169 (203)
.|.++.|+--.+-.+.++-..+++---+.|+- +++||- .+.+.||-. ++.+. +.+..+- ..+-..+
T Consensus 13 ~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~grvpViaGvg-~~~t~~a 91 (313)
T 3dz1_A 13 FAIAPTPFHDDGKIDDVSIDRLTDFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRAKSMQVIVGVS-APGFAAM 91 (313)
T ss_dssp EEECCCCBCTTSCBCHHHHHHHHHHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHCTTSEEEEECC-CSSHHHH
T ss_pred EEEeeCCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHcCCCcEEEecC-CCCHHHH
Confidence 35566676433444666667788777778874 444442 344555432 22321 2233221 2467788
Q ss_pred HHHHHHHHHcCCcEEEEe
Q 028827 170 ATLVQRAERNGFKALVLT 187 (203)
Q Consensus 170 ~~ll~rAe~aG~~AlvvT 187 (203)
.++.++|+++|++++++.
T Consensus 92 i~la~~A~~~Gadavlv~ 109 (313)
T 3dz1_A 92 RRLARLSMDAGAAGVMIA 109 (313)
T ss_dssp HHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHcCCCEEEEC
Confidence 899999999999999985
No 90
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=40.03 E-value=1.6e+02 Score=24.59 Aligned_cols=84 Identities=8% Similarity=0.035 Sum_probs=51.1
Q ss_pred cceEeccccchhccCchHHHHHHHHHHhcCCe--EEecC---CCCCCHHHHH-------hhcCC--ceeEEEeeeCCHHH
Q 028827 103 APIIIAPTALHKLANPEGEVATARAAASCNTI--MVLSF---TSSSSIEEVA-------ASCNA--VRFYQLYVFKKRDI 168 (203)
Q Consensus 103 ~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~--~~lss---~ss~sleeia-------~~~~~--~~w~Qly~~~d~~~ 168 (203)
.|.++.|+--.+-.+.++-..+++---+.|+- +++|| +.+.+.||-. ++..+ +.+.++- ..+-..
T Consensus 21 ~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~st~~ 99 (304)
T 3cpr_A 21 GVAMVTPFTESGDIDIAAGREVAAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGDRAKLIAGVG-TNNTRT 99 (304)
T ss_dssp EEECCCCBCTTSCBCHHHHHHHHHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECC-CSCHHH
T ss_pred EEeeeccCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEecCC-CCCHHH
Confidence 35556676433334566667777777777773 34554 3345665432 22233 3333321 235677
Q ss_pred HHHHHHHHHHcCCcEEEEe
Q 028827 169 AATLVQRAERNGFKALVLT 187 (203)
Q Consensus 169 ~~~ll~rAe~aG~~AlvvT 187 (203)
+.++.+.|+++|++++++.
T Consensus 100 ai~la~~A~~~Gadavlv~ 118 (304)
T 3cpr_A 100 SVELAEAAASAGADGLLVV 118 (304)
T ss_dssp HHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEC
Confidence 8899999999999999887
No 91
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=39.81 E-value=1.1e+02 Score=25.85 Aligned_cols=85 Identities=13% Similarity=-0.056 Sum_probs=53.0
Q ss_pred cceEeccccchhccCchHHHHHHHHHHhcCCeE--EecC---CCCCCHHHHH-------hhcCC--ceeEEEeeeCCHHH
Q 028827 103 APIIIAPTALHKLANPEGEVATARAAASCNTIM--VLSF---TSSSSIEEVA-------ASCNA--VRFYQLYVFKKRDI 168 (203)
Q Consensus 103 ~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~--~lss---~ss~sleeia-------~~~~~--~~w~Qly~~~d~~~ 168 (203)
.|.++.|+--.+-.+.++-..+++--.+.|+-- ++|| +.+.+.||-. ++..+ +.+.++- ..+-..
T Consensus 29 ~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg-~~~t~~ 107 (315)
T 3na8_A 29 IGYTITPFAADGGLDLPALGRSIERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAHRVPTIVSVS-DLTTAK 107 (315)
T ss_dssp EEECCCCBCTTSSBCHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECC-CSSHHH
T ss_pred EEEeeCcCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CCCHHH
Confidence 366667764444456667778888777888743 3443 2334555432 22222 3344432 245778
Q ss_pred HHHHHHHHHHcCCcEEEEee
Q 028827 169 AATLVQRAERNGFKALVLTA 188 (203)
Q Consensus 169 ~~~ll~rAe~aG~~AlvvTV 188 (203)
+.++.+.|+++|++++++..
T Consensus 108 ai~la~~A~~~Gadavlv~~ 127 (315)
T 3na8_A 108 TVRRAQFAESLGAEAVMVLP 127 (315)
T ss_dssp HHHHHHHHHHTTCSEEEECC
T ss_pred HHHHHHHHHhcCCCEEEECC
Confidence 88999999999999998853
No 92
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=39.79 E-value=1.2e+02 Score=25.32 Aligned_cols=83 Identities=17% Similarity=0.038 Sum_probs=50.1
Q ss_pred ceEeccccchhccCchHHHHHHHHHHhcCCe--EEecCCC---CCCHHHHHh-------hcCC--ceeEEEeeeCCHHHH
Q 028827 104 PIIIAPTALHKLANPEGEVATARAAASCNTI--MVLSFTS---SSSIEEVAA-------SCNA--VRFYQLYVFKKRDIA 169 (203)
Q Consensus 104 Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~--~~lss~s---s~sleeia~-------~~~~--~~w~Qly~~~d~~~~ 169 (203)
|-++.|+--.+-.+.++-..+++---+.|+- +.+||-+ +.+.||-.+ +..+ +.+.++- ..+-..+
T Consensus 7 ~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg-~~~t~~a 85 (291)
T 3tak_A 7 VAIVTPMLKDGGVDWKSLEKLVEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANKRIPIIAGTG-ANSTREA 85 (291)
T ss_dssp EECCCCBCTTSCBCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSSHHHH
T ss_pred eeeECCCCCCCCcCHHHHHHHHHHHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCeEEEeCC-CCCHHHH
Confidence 4556676433334566667777776677764 4445432 345554322 2232 3333321 2357788
Q ss_pred HHHHHHHHHcCCcEEEEe
Q 028827 170 ATLVQRAERNGFKALVLT 187 (203)
Q Consensus 170 ~~ll~rAe~aG~~AlvvT 187 (203)
.++.+.|+++|++++++.
T Consensus 86 i~la~~a~~~Gadavlv~ 103 (291)
T 3tak_A 86 IELTKAAKDLGADAALLV 103 (291)
T ss_dssp HHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHhcCCCEEEEc
Confidence 899999999999999886
No 93
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=39.65 E-value=1.6e+02 Score=24.56 Aligned_cols=83 Identities=18% Similarity=0.118 Sum_probs=51.0
Q ss_pred ceEeccccchhccCchHHHHHHHHHHhcCCe--EEecCC---CCCCHHHHHh-------hcCC--ceeEEEeeeCCHHHH
Q 028827 104 PIIIAPTALHKLANPEGEVATARAAASCNTI--MVLSFT---SSSSIEEVAA-------SCNA--VRFYQLYVFKKRDIA 169 (203)
Q Consensus 104 Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~--~~lss~---ss~sleeia~-------~~~~--~~w~Qly~~~d~~~~ 169 (203)
|.++.|+--.+-.+.++-..+++-..+.|+- +.+||- .+.+.||-.+ +..+ +.+.++- ..+-..+
T Consensus 9 ~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg-~~~t~~a 87 (294)
T 3b4u_A 9 AALTTPFKTDGTVDIDAMIAHARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGIAPSRIVTGVL-VDSIEDA 87 (294)
T ss_dssp EECCCCBCTTSSBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEEC-CSSHHHH
T ss_pred EEEECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCC-CccHHHH
Confidence 5556675333334556667777777777874 344553 3445654322 2232 3344432 2356778
Q ss_pred HHHHHHHHHcCCcEEEEe
Q 028827 170 ATLVQRAERNGFKALVLT 187 (203)
Q Consensus 170 ~~ll~rAe~aG~~AlvvT 187 (203)
.++.+.|+++|++++++.
T Consensus 88 i~la~~A~~~Gadavlv~ 105 (294)
T 3b4u_A 88 ADQSAEALNAGARNILLA 105 (294)
T ss_dssp HHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHhcCCCEEEEc
Confidence 899999999999999887
No 94
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=39.40 E-value=1.1e+02 Score=25.80 Aligned_cols=84 Identities=12% Similarity=0.054 Sum_probs=51.6
Q ss_pred cceEeccccchhccCchHHHHHHHHHHhcCCe--EEecC---CCCCCHHHHH-------hhcCC--ceeEEEeeeCCHHH
Q 028827 103 APIIIAPTALHKLANPEGEVATARAAASCNTI--MVLSF---TSSSSIEEVA-------ASCNA--VRFYQLYVFKKRDI 168 (203)
Q Consensus 103 ~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~--~~lss---~ss~sleeia-------~~~~~--~~w~Qly~~~d~~~ 168 (203)
.|.++.|+--.+-.+.++-..+++---+.|+- +++|| +.+.+.||-. ++..+ +.+.++- ..+-..
T Consensus 28 ~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg-~~st~e 106 (314)
T 3qze_A 28 MVALVTPFDAQGRLDWDSLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVKGRIPVIAGTG-ANSTRE 106 (314)
T ss_dssp EEECCCCBCTTSCBCHHHHHHHHHHHHHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECC-CSSHHH
T ss_pred EEeeECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCC-CcCHHH
Confidence 35666676433444666667777777777774 44444 2344555432 22232 3333322 235777
Q ss_pred HHHHHHHHHHcCCcEEEEe
Q 028827 169 AATLVQRAERNGFKALVLT 187 (203)
Q Consensus 169 ~~~ll~rAe~aG~~AlvvT 187 (203)
+.++.+.|+++|++++++.
T Consensus 107 ai~la~~A~~~Gadavlv~ 125 (314)
T 3qze_A 107 AVALTEAAKSGGADACLLV 125 (314)
T ss_dssp HHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEc
Confidence 8899999999999999987
No 95
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=39.14 E-value=94 Score=25.87 Aligned_cols=82 Identities=15% Similarity=0.044 Sum_probs=50.5
Q ss_pred ceEeccccchhccCchHHHHHHHHHHhcCCe--EEecCC---CCCCHHHHHh---hc----CCceeEEEeeeCCHHHHHH
Q 028827 104 PIIIAPTALHKLANPEGEVATARAAASCNTI--MVLSFT---SSSSIEEVAA---SC----NAVRFYQLYVFKKRDIAAT 171 (203)
Q Consensus 104 Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~--~~lss~---ss~sleeia~---~~----~~~~w~Qly~~~d~~~~~~ 171 (203)
|.++.|+--.+-.+.++-..+++---+.|+- +.+||- .+.+.||-.+ .. .+ .+.++- ..+-..+.+
T Consensus 5 ~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~g-ViaGvg-~~~t~~ai~ 82 (288)
T 2nuw_A 5 SPIITPFDKQGKVNVDALKTHAKNLLEKGIDAIFVNGTTGLGPALSKDEKRQNLNALYDVTHK-LIFQVG-SLNLNDVME 82 (288)
T ss_dssp EECCCCBCTTSCBCHHHHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHTTTCSC-EEEECC-CSCHHHHHH
T ss_pred EeeecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-eEEeeC-CCCHHHHHH
Confidence 5566676433334666667777777777774 344553 3456665432 21 23 222221 235677889
Q ss_pred HHHHHHHcCCcEEEEe
Q 028827 172 LVQRAERNGFKALVLT 187 (203)
Q Consensus 172 ll~rAe~aG~~AlvvT 187 (203)
+.+.|+++|++++++.
T Consensus 83 la~~A~~~Gadavlv~ 98 (288)
T 2nuw_A 83 LVKFSNEMDILGVSSH 98 (288)
T ss_dssp HHHHHHTSCCSEEEEC
T ss_pred HHHHHHhcCCCEEEEc
Confidence 9999999999999887
No 96
>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*
Probab=38.98 E-value=1e+02 Score=26.21 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHcCCcEEEEe
Q 028827 166 RDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 166 ~~~~~~ll~rAe~aG~~AlvvT 187 (203)
.+...+.+++|+++|.+-|+++
T Consensus 176 ~~~l~~~i~~a~~~Gi~~IilD 197 (294)
T 2dqw_A 176 KAFLEAQARRALSAGVPQVVLD 197 (294)
T ss_dssp HHHHHHHHHHHHHTTCSCEEEE
T ss_pred HHHHHHHHHHHHHCCCCcEEEc
Confidence 3567788999999999987777
No 97
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*
Probab=38.71 E-value=25 Score=31.64 Aligned_cols=33 Identities=18% Similarity=0.170 Sum_probs=24.0
Q ss_pred ccccccccccCCCCCCcceeecCcccCcceEecc
Q 028827 76 RITFRPRILVDVSRIDLSTTILDYKISAPIIIAP 109 (203)
Q Consensus 76 ~i~L~pRvL~dv~~~dtst~l~G~~~s~Pi~iaP 109 (203)
++.+.|+. +....+.++++++|.++..||++|.
T Consensus 69 ~~~~~~~~-~~~~~~~l~v~~~Gl~f~NPvglAA 101 (415)
T 3i65_A 69 KYNILPYD-TSNDSIYACTNIKHLDFINPFGVAA 101 (415)
T ss_dssp HTTCSCCC-CSCCCGGGCEEETTEEESSSEEECT
T ss_pred HhcCCCcc-cccccccccEEECCEECCCCCEECC
Confidence 44455542 2334566899999999999999986
No 98
>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B*
Probab=38.56 E-value=83 Score=26.96 Aligned_cols=85 Identities=12% Similarity=0.139 Sum_probs=53.0
Q ss_pred CcceEeccccchhccCchHHHHHHHHHHhcCCe---EEecCCCCCCHHHHHhhc---CCceeEEEeeeCCHHHHHHHHHH
Q 028827 102 SAPIIIAPTALHKLANPEGEVATARAAASCNTI---MVLSFTSSSSIEEVAASC---NAVRFYQLYVFKKRDIAATLVQR 175 (203)
Q Consensus 102 s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~---~~lss~ss~sleeia~~~---~~~~w~Qly~~~d~~~~~~ll~r 175 (203)
..||.|.=+ .+|+-+..++++|-++|.. ++-|-... ..+++.+.+ +.+ .. +-.++|.+..++++++
T Consensus 122 ~vplsI~DT-----~~~~~~~~V~eaal~aga~~k~iINdvs~~-~~~~~~~~aa~~g~~-vv-~m~~~dv~~l~~~~~~ 193 (310)
T 2h9a_B 122 DVPLMIIGC-----GVEEKDAEIFPVIGEALSGRNCLLSSATKD-NYKPIVATCMVHGHS-VV-ASAPLDINLSKQLNIM 193 (310)
T ss_dssp SSCEEEECC-----SCHHHHHHHHHHHHHHTTTSCCEEEEECTT-THHHHHHHHHHHTCE-EE-EECSSCHHHHHHHHHH
T ss_pred CceEEEECC-----CCCCCCHHHHHHHHHhCCCCCCEEEECCCC-ccHHHHHHHHHhCCC-EE-EEChhHHHHHHHHHHH
Confidence 567777222 3677778888888887763 44432222 456665543 322 11 2224478999999999
Q ss_pred HHHcCC--cEEEEeecCCCCC
Q 028827 176 AERNGF--KALVLTADTPRLG 194 (203)
Q Consensus 176 Ae~aG~--~AlvvTVD~p~~g 194 (203)
|+++|+ +-|+++-=.-..|
T Consensus 194 a~~~Gi~~e~IilDPg~g~~g 214 (310)
T 2h9a_B 194 IMEMNLAPNRIIMDPLIGALG 214 (310)
T ss_dssp HHTTTCCGGGEEEECCCCCTT
T ss_pred HHHCCCChhhEEEeCCCcccc
Confidence 999999 6788875443334
No 99
>2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A*
Probab=38.48 E-value=82 Score=26.79 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHcCCc--EEEEe
Q 028827 166 RDIAATLVQRAERNGFK--ALVLT 187 (203)
Q Consensus 166 ~~~~~~ll~rAe~aG~~--AlvvT 187 (203)
.+...+.+++|+++|++ -|+++
T Consensus 170 ~~~l~~~i~~a~~~Gi~~~~IilD 193 (294)
T 2y5s_A 170 RDFLAARAQALRDAGVAAERICVD 193 (294)
T ss_dssp HHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred HHHHHHHHHHHHHcCCChhhEEEe
Confidence 56677889999999998 78888
No 100
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=38.43 E-value=1.6e+02 Score=24.58 Aligned_cols=84 Identities=14% Similarity=0.105 Sum_probs=50.4
Q ss_pred ceEeccccchhccCchHHHHHHHHHHhcCCe--EEecCC---CCCCHHHHH-------hhcCC--ceeEEEeeeCCHHHH
Q 028827 104 PIIIAPTALHKLANPEGEVATARAAASCNTI--MVLSFT---SSSSIEEVA-------ASCNA--VRFYQLYVFKKRDIA 169 (203)
Q Consensus 104 Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~--~~lss~---ss~sleeia-------~~~~~--~~w~Qly~~~d~~~~ 169 (203)
|-++.|+--.+-.+.++-..+++--.+.|+- +.+||- .+.+.||-. ++..+ +.+.++- ..+-..+
T Consensus 18 ~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg-~~~t~~a 96 (301)
T 1xky_A 18 TAMVTPFDINGNIDFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTG-SNNTHAS 96 (301)
T ss_dssp EECCCCBCTTSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSCHHHH
T ss_pred EeeECcCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCceEEeCCC-CCCHHHH
Confidence 4555665333334556667777777777774 344553 344555432 22232 3333331 2356778
Q ss_pred HHHHHHHHHcCCcEEEEee
Q 028827 170 ATLVQRAERNGFKALVLTA 188 (203)
Q Consensus 170 ~~ll~rAe~aG~~AlvvTV 188 (203)
.++.+.|+++|++++++..
T Consensus 97 i~la~~A~~~Gadavlv~~ 115 (301)
T 1xky_A 97 IDLTKKATEVGVDAVMLVA 115 (301)
T ss_dssp HHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHhcCCCEEEEcC
Confidence 8899999999999998874
No 101
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=38.33 E-value=1.2e+02 Score=25.25 Aligned_cols=83 Identities=10% Similarity=0.065 Sum_probs=50.5
Q ss_pred ceEeccccchhccCchHHHHHHHHHHhcCCeEEe--cC---CCCCCHHHHH-------hhcCC--ceeEEEeeeCCHHHH
Q 028827 104 PIIIAPTALHKLANPEGEVATARAAASCNTIMVL--SF---TSSSSIEEVA-------ASCNA--VRFYQLYVFKKRDIA 169 (203)
Q Consensus 104 Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~l--ss---~ss~sleeia-------~~~~~--~~w~Qly~~~d~~~~ 169 (203)
|.++.|+ -.+-.+.++-..+++---+.|+--.+ || +.+.+.||-. ++..+ +.+.++- ..+-..+
T Consensus 7 ~a~vTPf-~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg-~~~t~~a 84 (292)
T 2vc6_A 7 TALVTPF-ADDRIDEVALHDLVEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKTANGRVPVIAGAG-SNSTAEA 84 (292)
T ss_dssp EECCCCE-ETTEECHHHHHHHHHHHHHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECC-CSSHHHH
T ss_pred EeeecCc-CCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CccHHHH
Confidence 4556666 44445667777777777777875443 43 2344555432 22222 3333332 2356777
Q ss_pred HHHHHHHHHcCCcEEEEee
Q 028827 170 ATLVQRAERNGFKALVLTA 188 (203)
Q Consensus 170 ~~ll~rAe~aG~~AlvvTV 188 (203)
.++.+.|+++|++++++..
T Consensus 85 i~la~~A~~~Gadavlv~~ 103 (292)
T 2vc6_A 85 IAFVRHAQNAGADGVLIVS 103 (292)
T ss_dssp HHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHcCCCEEEEcC
Confidence 8899999999999998874
No 102
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=38.28 E-value=1.5e+02 Score=25.15 Aligned_cols=84 Identities=13% Similarity=0.037 Sum_probs=51.7
Q ss_pred cceEeccccchhccCchHHHHHHHHHHhcCCeE--EecCC---CCCCHHHHH-------hhcCC--ceeEEEeeeCCHHH
Q 028827 103 APIIIAPTALHKLANPEGEVATARAAASCNTIM--VLSFT---SSSSIEEVA-------ASCNA--VRFYQLYVFKKRDI 168 (203)
Q Consensus 103 ~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~--~lss~---ss~sleeia-------~~~~~--~~w~Qly~~~d~~~ 168 (203)
.|.++.|+--.+-.+.++-..+++---+.|+-- ++||- .+.+.||-. ++..+ +.+..+- ..+-..
T Consensus 27 ~~alvTPf~~dg~iD~~~l~~li~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg-~~st~~ 105 (315)
T 3si9_A 27 VTALITPFDDNGAIDEKAFCNFVEWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVAKRVPVVAGAG-SNSTSE 105 (315)
T ss_dssp EEECCCCBCTTSCBCHHHHHHHHHHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECC-CSSHHH
T ss_pred eEeeECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCC-CCCHHH
Confidence 355666764333346666677777777788744 34442 334555432 22222 3333332 235778
Q ss_pred HHHHHHHHHHcCCcEEEEe
Q 028827 169 AATLVQRAERNGFKALVLT 187 (203)
Q Consensus 169 ~~~ll~rAe~aG~~AlvvT 187 (203)
+.++.+.|+++|++++++.
T Consensus 106 ai~la~~A~~~Gadavlv~ 124 (315)
T 3si9_A 106 AVELAKHAEKAGADAVLVV 124 (315)
T ss_dssp HHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEC
Confidence 8899999999999999887
No 103
>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A
Probab=38.27 E-value=28 Score=28.60 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeecCCC
Q 028827 166 RDIAATLVQRAERNGFKALVLTADTPR 192 (203)
Q Consensus 166 ~~~~~~ll~rAe~aG~~AlvvTVD~p~ 192 (203)
.+.+.+.+++|++.++++|++++|+|.
T Consensus 24 ~~~l~~~l~~a~~~~~~~Ivl~inspG 50 (230)
T 3viv_A 24 YDQFDRYITIAEQDNAEAIIIELDTPG 50 (230)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEEBSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEEEeCCC
Confidence 356677788888889999999999986
No 104
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=38.21 E-value=50 Score=27.53 Aligned_cols=34 Identities=18% Similarity=0.087 Sum_probs=28.8
Q ss_pred chHHHHHHHHHHhcCCeEEecCCCCCCHHHHHhh
Q 028827 118 PEGEVATARAAASCNTIMVLSFTSSSSIEEVAAS 151 (203)
Q Consensus 118 p~gE~a~AraA~~~gi~~~lss~ss~sleeia~~ 151 (203)
.+|-..+.+.+++.|++++..-+...+++.+.+.
T Consensus 73 ~egl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~ 106 (262)
T 1zco_A 73 EKALRWMREAADEYGLVTVTEVMDTRHVELVAKY 106 (262)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECCCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEeeCCHHhHHHHHhh
Confidence 6788899999999999999998888777777654
No 105
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=37.57 E-value=1.2e+02 Score=25.74 Aligned_cols=82 Identities=16% Similarity=0.073 Sum_probs=49.8
Q ss_pred ceEeccc-cchhccCchHHHHHHHHHHhcCCeEEe--cC---CCCCCHHHHH-------hhcCC--ceeEEEeeeCCHHH
Q 028827 104 PIIIAPT-ALHKLANPEGEVATARAAASCNTIMVL--SF---TSSSSIEEVA-------ASCNA--VRFYQLYVFKKRDI 168 (203)
Q Consensus 104 Pi~iaP~-g~~~l~hp~gE~a~AraA~~~gi~~~l--ss---~ss~sleeia-------~~~~~--~~w~Qly~~~d~~~ 168 (203)
|.++.|+ --.+-.+.++-..+++--.+.|+--.+ || +.+.+.||-. ++..+ +.+.++-- +-..
T Consensus 17 ~a~vTPF~~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~--st~~ 94 (314)
T 3d0c_A 17 GINIVPFLEGTREIDWKGLDDNVEFLLQNGIEVIVPNGNTGEFYALTIEEAKQVATRVTELVNGRATVVAGIGY--SVDT 94 (314)
T ss_dssp ECCCCCBCTTTCCBCHHHHHHHHHHHHHTTCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECS--SHHH
T ss_pred EeeeccccCCCCCCCHHHHHHHHHHHHHcCCCEEEECcccCChhhCCHHHHHHHHHHHHHHhCCCCeEEecCCc--CHHH
Confidence 4455565 333334556667777777777875443 33 3344555432 22232 34444432 6677
Q ss_pred HHHHHHHHHHcCCcEEEEe
Q 028827 169 AATLVQRAERNGFKALVLT 187 (203)
Q Consensus 169 ~~~ll~rAe~aG~~AlvvT 187 (203)
+.++.+.|+++|++++++.
T Consensus 95 ai~la~~A~~~Gadavlv~ 113 (314)
T 3d0c_A 95 AIELGKSAIDSGADCVMIH 113 (314)
T ss_dssp HHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEC
Confidence 8889999999999999887
No 106
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=37.43 E-value=1.5e+02 Score=24.64 Aligned_cols=83 Identities=16% Similarity=0.029 Sum_probs=49.7
Q ss_pred ceEeccccchhccCchHHHHHHHHHHh-cCCe--EEecC---CCCCCHHHHH-------hhcCC--ceeEEEeeeCCHHH
Q 028827 104 PIIIAPTALHKLANPEGEVATARAAAS-CNTI--MVLSF---TSSSSIEEVA-------ASCNA--VRFYQLYVFKKRDI 168 (203)
Q Consensus 104 Pi~iaP~g~~~l~hp~gE~a~AraA~~-~gi~--~~lss---~ss~sleeia-------~~~~~--~~w~Qly~~~d~~~ 168 (203)
|.++.|+--.+-.+.++-..+++--.+ .|+- +.+|| +.+.+.||-. ++..+ +.+.++ -..+-..
T Consensus 9 ~a~vTPf~~dg~iD~~~l~~lv~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGv-g~~~t~~ 87 (293)
T 1f6k_A 9 SALLVSFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQV-GSVNLKE 87 (293)
T ss_dssp EECCCCBCTTSCBCHHHHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEC-CCSCHHH
T ss_pred EeeEcCCCCCCCcCHHHHHHHHHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEec-CCCCHHH
Confidence 555667643333455666777777677 7774 34454 3345565432 22232 222222 1235677
Q ss_pred HHHHHHHHHHcCCcEEEEe
Q 028827 169 AATLVQRAERNGFKALVLT 187 (203)
Q Consensus 169 ~~~ll~rAe~aG~~AlvvT 187 (203)
+.++.+.|+++|++++++.
T Consensus 88 ai~la~~a~~~Gadavlv~ 106 (293)
T 1f6k_A 88 AVELGKYATELGYDCLSAV 106 (293)
T ss_dssp HHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEC
Confidence 8889999999999999887
No 107
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=37.20 E-value=1.6e+02 Score=24.59 Aligned_cols=83 Identities=13% Similarity=0.070 Sum_probs=50.0
Q ss_pred ceEeccccchhccCchHHHHHHHHHHhcCCe--EEecCC---CCCCHHHHH-------hhcCC--ceeEEEeeeCCHHHH
Q 028827 104 PIIIAPTALHKLANPEGEVATARAAASCNTI--MVLSFT---SSSSIEEVA-------ASCNA--VRFYQLYVFKKRDIA 169 (203)
Q Consensus 104 Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~--~~lss~---ss~sleeia-------~~~~~--~~w~Qly~~~d~~~~ 169 (203)
|.++.|+--.+-.+.++-..+++--.+.|+- +++||- .+.+.||-. ++..+ +.+.++- ..+-..+
T Consensus 17 ~a~vTPF~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg-~~~t~~a 95 (303)
T 2wkj_A 17 AALLTPFDQQQALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVG-CVSTAES 95 (303)
T ss_dssp EECCCCBCTTSSBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECC-CSSHHHH
T ss_pred EeeEcCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECeeccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CCCHHHH
Confidence 4556676433334556667777777777773 345553 344555432 22232 3333321 2356778
Q ss_pred HHHHHHHHHcCCcEEEEe
Q 028827 170 ATLVQRAERNGFKALVLT 187 (203)
Q Consensus 170 ~~ll~rAe~aG~~AlvvT 187 (203)
.++.+.|+++|++++++.
T Consensus 96 i~la~~A~~~Gadavlv~ 113 (303)
T 2wkj_A 96 QQLAASAKRYGFDAVSAV 113 (303)
T ss_dssp HHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHhCCCCEEEec
Confidence 889999999999999887
No 108
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=37.18 E-value=1.1e+02 Score=25.76 Aligned_cols=88 Identities=10% Similarity=0.027 Sum_probs=53.4
Q ss_pred cceEeccccchhccCchHHHHHHHHHHhcCCe--EEecC---CCCCCHHHHH-------hhcCC--ceeEEEeeeCCHHH
Q 028827 103 APIIIAPTALHKLANPEGEVATARAAASCNTI--MVLSF---TSSSSIEEVA-------ASCNA--VRFYQLYVFKKRDI 168 (203)
Q Consensus 103 ~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~--~~lss---~ss~sleeia-------~~~~~--~~w~Qly~~~d~~~ 168 (203)
.|.++.|+--.+-.+.++-..+++---+.|+- +++|| +.+.+.||-. ++..+ +.+.++- ..+-..
T Consensus 13 ~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~ 91 (309)
T 3fkr_A 13 FPVVPTTFADTGDLDLASQKRAVDFMIDAGSDGLCILANFSEQFAITDDERDVLTRTILEHVAGRVPVIVTTS-HYSTQV 91 (309)
T ss_dssp CCBCCCCBCTTSSBCHHHHHHHHHHHHHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSSHHH
T ss_pred EEeeeCCCCcCCCcCHHHHHHHHHHHHHcCCCEEEECccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC-CchHHH
Confidence 35566676434434666667777777777773 44454 2344555432 22232 3333331 235777
Q ss_pred HHHHHHHHHHcCCcEEEEeecCCCC
Q 028827 169 AATLVQRAERNGFKALVLTADTPRL 193 (203)
Q Consensus 169 ~~~ll~rAe~aG~~AlvvTVD~p~~ 193 (203)
+.++.+.|+++|++++.+.. |..
T Consensus 92 ai~la~~A~~~Gadavlv~~--Pyy 114 (309)
T 3fkr_A 92 CAARSLRAQQLGAAMVMAMP--PYH 114 (309)
T ss_dssp HHHHHHHHHHTTCSEEEECC--SCB
T ss_pred HHHHHHHHHHcCCCEEEEcC--CCC
Confidence 88999999999999999864 554
No 109
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=37.17 E-value=35 Score=27.76 Aligned_cols=66 Identities=14% Similarity=0.109 Sum_probs=37.5
Q ss_pred CchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHhhcCCceeEEE----------eeeCCHHHHHHHHHHHHHcCCcEEEE
Q 028827 117 NPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQL----------YVFKKRDIAATLVQRAERNGFKALVL 186 (203)
Q Consensus 117 hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~~~~~~~w~Ql----------y~~~d~~~~~~ll~rAe~aG~~Alvv 186 (203)
++.--..+|+++.+.|...+ +..+..-+++|++..+-|- +-+ |... ..+.++.+.++|++.|++
T Consensus 34 ~~~~~~~~A~a~~~~Ga~~i-~~~~~~~i~~ir~~v~~Pv-ig~~k~d~~~~~~~I~~----~~~~i~~~~~~Gad~V~l 107 (232)
T 3igs_A 34 KPEIVAAMALAAEQAGAVAV-RIEGIDNLRMTRSLVSVPI-IGIIKRDLDESPVRITP----FLDDVDALAQAGAAIIAV 107 (232)
T ss_dssp SHHHHHHHHHHHHHTTCSEE-EEESHHHHHHHHTTCCSCE-EEECBCCCSSCCCCBSC----SHHHHHHHHHHTCSEEEE
T ss_pred CcchHHHHHHHHHHCCCeEE-EECCHHHHHHHHHhcCCCE-EEEEeecCCCcceEeCc----cHHHHHHHHHcCCCEEEE
Confidence 34455899999999998854 3322223344444443332 211 1111 234577788999998766
Q ss_pred ee
Q 028827 187 TA 188 (203)
Q Consensus 187 TV 188 (203)
..
T Consensus 108 ~~ 109 (232)
T 3igs_A 108 DG 109 (232)
T ss_dssp EC
T ss_pred Cc
Confidence 43
No 110
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=36.70 E-value=91 Score=24.57 Aligned_cols=84 Identities=13% Similarity=0.112 Sum_probs=46.0
Q ss_pred ccCcceEeccccchhccCchHHHHHHHHHHhcCCeEE-ecCC------CCCCHHHHHhhc--CCce--eEEEeeeCCHHH
Q 028827 100 KISAPIIIAPTALHKLANPEGEVATARAAASCNTIMV-LSFT------SSSSIEEVAASC--NAVR--FYQLYVFKKRDI 168 (203)
Q Consensus 100 ~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~-lss~------ss~sleeia~~~--~~~~--w~Qly~~~d~~~ 168 (203)
+..++|.++......+ +-+ ...+.++++|.-.+ +... +...++++++.. -+.. -+..+..++.+.
T Consensus 15 ~~~~klg~~~~~~~~~---~~~-~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~~ 90 (257)
T 3lmz_A 15 VNPFHLGMAGYTFVNF---DLD-TTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAVGPIYMKSEEE 90 (257)
T ss_dssp CCSSEEEECGGGGTTS---CHH-HHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEEEEEEECSHHH
T ss_pred CCceEEEEEEEeecCC---CHH-HHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEEeccccCCHHH
Confidence 3456777777665542 223 34444555555332 2211 111234555443 1322 222233367888
Q ss_pred HHHHHHHHHHcCCcEEEEe
Q 028827 169 AATLVQRAERNGFKALVLT 187 (203)
Q Consensus 169 ~~~ll~rAe~aG~~AlvvT 187 (203)
.++.++.|.+.|++.|++.
T Consensus 91 ~~~~i~~A~~lGa~~v~~~ 109 (257)
T 3lmz_A 91 IDRAFDYAKRVGVKLIVGV 109 (257)
T ss_dssp HHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHHhCCCEEEec
Confidence 8999999999999998875
No 111
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=36.65 E-value=2.6e+02 Score=25.77 Aligned_cols=20 Identities=0% Similarity=-0.006 Sum_probs=16.2
Q ss_pred ceeecCcccCcceEeccccc
Q 028827 93 STTILDYKISAPIIIAPTAL 112 (203)
Q Consensus 93 st~l~G~~~s~Pi~iaP~g~ 112 (203)
..+|=+..+.-+|++|||+.
T Consensus 8 p~~ig~~~l~nRi~~apm~~ 27 (671)
T 1ps9_A 8 PLDLGFTTLKNRVLMGSMHT 27 (671)
T ss_dssp CEECSSCEESSSEEECCCCC
T ss_pred CeeECCEEEcCceEECCccC
Confidence 35666788899999999865
No 112
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=36.64 E-value=1.1e+02 Score=25.49 Aligned_cols=86 Identities=20% Similarity=0.067 Sum_probs=51.3
Q ss_pred ceEeccccchhccCchHHHHHHHHHHhcCCe--EEecCC---CCCCHHHHHh---h----cCCceeEEEeeeCCHHHHHH
Q 028827 104 PIIIAPTALHKLANPEGEVATARAAASCNTI--MVLSFT---SSSSIEEVAA---S----CNAVRFYQLYVFKKRDIAAT 171 (203)
Q Consensus 104 Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~--~~lss~---ss~sleeia~---~----~~~~~w~Qly~~~d~~~~~~ 171 (203)
|.++.|+--.+-.+.++-..+++--.+.|+- +.+||- .+.+.||-.+ . ..+ .+.++- ..+-..+.+
T Consensus 5 ~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~eEr~~v~~~~~~~~~g-viaGvg-~~~t~~ai~ 82 (293)
T 1w3i_A 5 TPIITPFTKDNRIDKEKLKIHAENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDVTNK-IIFQVG-GLNLDDAIR 82 (293)
T ss_dssp EECCCCBCTTSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTTCSC-EEEECC-CSCHHHHHH
T ss_pred EEeeCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHcCC-EEEecC-CCCHHHHHH
Confidence 4556676333334556667777777777774 344553 3445655432 2 223 222221 235677888
Q ss_pred HHHHHHHcCCcEEEEeecCCCC
Q 028827 172 LVQRAERNGFKALVLTADTPRL 193 (203)
Q Consensus 172 ll~rAe~aG~~AlvvTVD~p~~ 193 (203)
+.+.|+++|++++++. +|..
T Consensus 83 la~~A~~~Gadavlv~--~P~y 102 (293)
T 1w3i_A 83 LAKLSKDFDIVGIASY--APYY 102 (293)
T ss_dssp HHHHGGGSCCSEEEEE--CCCS
T ss_pred HHHHHHhcCCCEEEEc--CCCC
Confidence 9999999999999887 3444
No 113
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=36.48 E-value=66 Score=27.43 Aligned_cols=40 Identities=18% Similarity=0.137 Sum_probs=30.3
Q ss_pred chHHHHHHHHHHhcCCeEEecCCCCCCHHHHHhhcCCceeEEE
Q 028827 118 PEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQL 160 (203)
Q Consensus 118 p~gE~a~AraA~~~gi~~~lss~ss~sleeia~~~~~~~w~Ql 160 (203)
.+|=..+.+.+++.|++++..-+...+++.+.+. +-|+|+
T Consensus 77 ~~GL~~L~~~~~e~Glp~~Tev~d~~~v~~l~~~---vd~lqI 116 (285)
T 3sz8_A 77 DEGLKIFAEVKARFGVPVITDVHEAEQAAPVAEI---ADVLQV 116 (285)
T ss_dssp HHHHHHHHHHHHHHCCCEEEECCSGGGHHHHHTT---CSEEEE
T ss_pred HHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHh---CCEEEE
Confidence 3677789999999999999988887777777554 234554
No 114
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=36.32 E-value=1.6e+02 Score=24.76 Aligned_cols=83 Identities=7% Similarity=-0.031 Sum_probs=49.2
Q ss_pred ceEeccccchhccCchHHHHHHHHHHhcCCe--EEecC---CCCCCHHHHH-------hhcCC--ceeEEEeeeCCHHHH
Q 028827 104 PIIIAPTALHKLANPEGEVATARAAASCNTI--MVLSF---TSSSSIEEVA-------ASCNA--VRFYQLYVFKKRDIA 169 (203)
Q Consensus 104 Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~--~~lss---~ss~sleeia-------~~~~~--~~w~Qly~~~d~~~~ 169 (203)
|-++.|+--.+-.+.++-..+++--.+.|+- +++|| +.+.+.||-. ++.++ +.+..+- ..+-..+
T Consensus 20 ~alvTPf~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg-~~~t~~a 98 (307)
T 3s5o_A 20 PPVTTPFTATAEVDYGKLEENLHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKNRLLLAGSG-CESTQAT 98 (307)
T ss_dssp CBCCCCBCTTSCBCHHHHHHHHHHHTTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTSCTTSEEEEECC-CSSHHHH
T ss_pred EeeEccCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHcCCCCcEEEecC-CCCHHHH
Confidence 4555665433334555666777777778874 34444 2344555432 22232 2222221 2366778
Q ss_pred HHHHHHHHHcCCcEEEEe
Q 028827 170 ATLVQRAERNGFKALVLT 187 (203)
Q Consensus 170 ~~ll~rAe~aG~~AlvvT 187 (203)
.++.++|+++|++++.+.
T Consensus 99 i~la~~A~~~Gadavlv~ 116 (307)
T 3s5o_A 99 VEMTVSMAQVGADAAMVV 116 (307)
T ss_dssp HHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHcCCCEEEEc
Confidence 899999999999999986
No 115
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=36.21 E-value=1.1e+02 Score=25.61 Aligned_cols=82 Identities=11% Similarity=0.042 Sum_probs=50.7
Q ss_pred ceEeccccchhccCchHHHHHHHHHHhcCCeEE--ecC---CCCCCHHHHH-------hhcCC--ceeEEEeeeCCHHHH
Q 028827 104 PIIIAPTALHKLANPEGEVATARAAASCNTIMV--LSF---TSSSSIEEVA-------ASCNA--VRFYQLYVFKKRDIA 169 (203)
Q Consensus 104 Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~--lss---~ss~sleeia-------~~~~~--~~w~Qly~~~d~~~~ 169 (203)
|.++.|+ -.+-.+.++-..+++--.+.|+--. +|| +.+.+.||-. ++..+ +.+.++- ..+-..+
T Consensus 7 ~a~vTPf-~dg~iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~a 84 (297)
T 2rfg_A 7 IAMITPF-INGQVDEKALAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQGRVPVIAGAG-SNNPVEA 84 (297)
T ss_dssp EECCCCE-ETTEECHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECC-CSSHHHH
T ss_pred EeeecCc-CCCCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEccC-CCCHHHH
Confidence 5556676 4444566777777777777787443 444 3344555432 22232 3333332 2356778
Q ss_pred HHHHHHHHHcCCcEEEEe
Q 028827 170 ATLVQRAERNGFKALVLT 187 (203)
Q Consensus 170 ~~ll~rAe~aG~~AlvvT 187 (203)
.++.+.|+++|++++++.
T Consensus 85 i~la~~A~~~Gadavlv~ 102 (297)
T 2rfg_A 85 VRYAQHAQQAGADAVLCV 102 (297)
T ss_dssp HHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHhcCCCEEEEc
Confidence 889999999999999887
No 116
>2fiq_A Putative tagatose 6-phosphate kinase 1; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics; 2.25A {Escherichia coli} SCOP: c.1.10.7
Probab=35.58 E-value=1.4e+02 Score=26.79 Aligned_cols=74 Identities=16% Similarity=0.126 Sum_probs=47.9
Q ss_pred cCchHHHHHHHHHHhcCCeEEecCCCC--------CC--HHHHHh-------hcCCc---eeEEEeeeCCH---------
Q 028827 116 ANPEGEVATARAAASCNTIMVLSFTSS--------SS--IEEVAA-------SCNAV---RFYQLYVFKKR--------- 166 (203)
Q Consensus 116 ~hp~gE~a~AraA~~~gi~~~lss~ss--------~s--leeia~-------~~~~~---~w~Qly~~~d~--------- 166 (203)
.|++-=.++.++|++.+.|.++....+ ++ ++++.. ...-+ ..+.+=...+.
T Consensus 22 ~n~e~i~Ail~aAee~~sPVIi~~s~~~v~~~gGY~g~~~~~~~~~v~~~A~~~~vP~~~VaLHlDHg~~~~w~~~~~~~ 101 (420)
T 2fiq_A 22 AHPLVIEAALAFDRNSTRKVLIEATSNQVNQFGGYTGMTPADFREFVFAIADKVGFARERIILGGDHLGPNCWQQENVDA 101 (420)
T ss_dssp CCHHHHHHHHHHTTTSCCCEEEEEETTTBSTTCTTTTBCHHHHHHHHHHHHHHHTCCGGGEEEEEEEESSGGGTTSBHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcChhhhhhccCCCCCCHHHHHHHHHHHHHHcCcCcceEEEECCCCCCccccccchhh
Confidence 477777899999999999998863111 12 454432 12222 45555333332
Q ss_pred --HHHHHHHHHHHHcCCcEEEEeec
Q 028827 167 --DIAATLVQRAERNGFKALVLTAD 189 (203)
Q Consensus 167 --~~~~~ll~rAe~aG~~AlvvTVD 189 (203)
+..++++++|.++||+-|.++--
T Consensus 102 am~~a~e~i~~aI~aGFtSVMiD~S 126 (420)
T 2fiq_A 102 AMEKSVELVKAYVRAGFSKIHLDAS 126 (420)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred hhhhHHHHHHHHHHhCCCEEEECCC
Confidence 44459999999999999887654
No 117
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=35.51 E-value=35 Score=27.77 Aligned_cols=64 Identities=22% Similarity=0.172 Sum_probs=37.8
Q ss_pred CchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHh---hcCCce---eEEE------eeeCCHHHHHHHHHHHHHcCCcEE
Q 028827 117 NPEGEVATARAAASCNTIMVLSFTSSSSIEEVAA---SCNAVR---FYQL------YVFKKRDIAATLVQRAERNGFKAL 184 (203)
Q Consensus 117 hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~---~~~~~~---w~Ql------y~~~d~~~~~~ll~rAe~aG~~Al 184 (203)
++.--..+|+++.+.|...+-. .++++|.+ ..+-|- |-+. |... +.+.++.+.++|++.|
T Consensus 34 ~~~~~~~~A~a~~~~Ga~~i~~----~~~~~i~~ir~~v~~Pvig~~k~~~~~~~~~I~~----~~~~i~~~~~aGad~I 105 (229)
T 3q58_A 34 KPEIVAAMAQAAASAGAVAVRI----EGIENLRTVRPHLSVPIIGIIKRDLTGSPVRITP----YLQDVDALAQAGADII 105 (229)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEE----ESHHHHHHHGGGCCSCEEEECBCCCSSCCCCBSC----SHHHHHHHHHHTCSEE
T ss_pred CcchHHHHHHHHHHCCCcEEEE----CCHHHHHHHHHhcCCCEEEEEeecCCCCceEeCc----cHHHHHHHHHcCCCEE
Confidence 3445589999999999886542 24555544 433332 1221 2211 2345777889999987
Q ss_pred EEee
Q 028827 185 VLTA 188 (203)
Q Consensus 185 vvTV 188 (203)
++..
T Consensus 106 ~l~~ 109 (229)
T 3q58_A 106 AFDA 109 (229)
T ss_dssp EEEC
T ss_pred EECc
Confidence 6643
No 118
>3txv_A Probable tagatose 6-phosphate kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Sinorhizobium meliloti}
Probab=35.28 E-value=43 Score=30.58 Aligned_cols=75 Identities=15% Similarity=0.082 Sum_probs=46.5
Q ss_pred cCchHHHHHHHHHHhcCCeEEecCCCC-------C---CHHHHH-------hhc--CC-ceeEEEeeeCC----------
Q 028827 116 ANPEGEVATARAAASCNTIMVLSFTSS-------S---SIEEVA-------ASC--NA-VRFYQLYVFKK---------- 165 (203)
Q Consensus 116 ~hp~gE~a~AraA~~~gi~~~lss~ss-------~---sleeia-------~~~--~~-~~w~Qly~~~d---------- 165 (203)
.|++--.++.++|++.+.|.++....+ . ..++++ +.. |. +..+++=-..+
T Consensus 29 ~n~e~i~Ail~aAee~~sPVIIe~t~~qv~~~gGYtG~~p~~f~~~V~~~A~~~~vPv~pV~LhlDHg~~~~w~~~~~~~ 108 (450)
T 3txv_A 29 AHPLVIEAAMLRAHREKAPVLIEATCNQVNQDGGYTGMTPEDFTRFVGAIADRIEFPREKILLGGDHLGPNPWKHLPADE 108 (450)
T ss_dssp CCHHHHHHHHHHHHHSCSCEEEEEETTTSCTTCTTTTCCHHHHHHHHHHHHHHTTCCGGGEEEEEEEESSGGGTTSCHHH
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcChhhHhhcCCCCCCCHHHHHHHHHHHHHHcCcCcccEEEECCCCCCcccccccHHH
Confidence 477888999999999999988752211 1 123332 222 21 23454422221
Q ss_pred -HHHHHHHHHHHHHcCCcEEEEeecC
Q 028827 166 -RDIAATLVQRAERNGFKALVLTADT 190 (203)
Q Consensus 166 -~~~~~~ll~rAe~aG~~AlvvTVD~ 190 (203)
.+...+++++|.++||+-|.++--.
T Consensus 109 am~~a~e~i~~aI~AGFtSVMiD~S~ 134 (450)
T 3txv_A 109 AMAKAEAMITAYAKAGFTKLHLDTSM 134 (450)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEECCCB
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 1235899999999999997765443
No 119
>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A*
Probab=35.27 E-value=27 Score=30.49 Aligned_cols=67 Identities=15% Similarity=0.124 Sum_probs=39.3
Q ss_pred chHHHHHHHHHHhcCCeEEecCCCC----CCHHHH-------Hhh-cCCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEE
Q 028827 118 PEGEVATARAAASCNTIMVLSFTSS----SSIEEV-------AAS-CNAVRFYQLYVFKKRDIAATLVQRAERNGFKALV 185 (203)
Q Consensus 118 p~gE~a~AraA~~~gi~~~lss~ss----~sleei-------a~~-~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~Alv 185 (203)
.+.-.++.+||++.+.|.++..... .+.+.+ ++. ..-|-.++| |+....+++++|.++||.-+.
T Consensus 28 ~e~~~Ail~AAee~~sPvIlq~s~g~~~y~g~~~~~~~v~~aa~~~~~VPValHl----DHg~~~e~i~~ai~~GFtSVM 103 (323)
T 2isw_A 28 MEQIQGIMKAVVQLKSPVILQCSRGALKYSDMIYLKKLCEAALEKHPDIPICIHL----DHGDTLESVKMAIDLGFSSVM 103 (323)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEHHHHHHTTTHHHHHHHHHHHHHCTTSCEEEEE----EEECSHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEECChhHHHhCCHHHHHHHHHHHHHhcCCCcEEEEC----CCCCCHHHHHHHHHcCCCeEE
Confidence 3455788888888888888753111 111211 111 123444444 666666778888888888876
Q ss_pred Eee
Q 028827 186 LTA 188 (203)
Q Consensus 186 vTV 188 (203)
++-
T Consensus 104 iDg 106 (323)
T 2isw_A 104 IDA 106 (323)
T ss_dssp ECC
T ss_pred ecC
Confidence 653
No 120
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=34.90 E-value=2.1e+02 Score=26.85 Aligned_cols=20 Identities=10% Similarity=0.122 Sum_probs=16.7
Q ss_pred ceeecCcccCcceEeccccc
Q 028827 93 STTILDYKISAPIIIAPTAL 112 (203)
Q Consensus 93 st~l~G~~~s~Pi~iaP~g~ 112 (203)
..+|-|.++.-+|++|||+.
T Consensus 12 p~~ig~~~l~NRiv~apm~~ 31 (729)
T 1o94_A 12 PIQIGPKTLRNRFYQVPHCI 31 (729)
T ss_dssp CEEETTEEESSSEEECCCCC
T ss_pred CeeECCEEECCccEECCCcC
Confidence 46777899999999999854
No 121
>1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3
Probab=34.81 E-value=74 Score=25.63 Aligned_cols=69 Identities=7% Similarity=0.046 Sum_probs=40.6
Q ss_pred HHHHHHHhcCC--eEEecCCCCCCHHHHHhhcCCceeEEEe------------------eeCCHHH-HHHHHHHHHHcCC
Q 028827 123 ATARAAASCNT--IMVLSFTSSSSIEEVAASCNAVRFYQLY------------------VFKKRDI-AATLVQRAERNGF 181 (203)
Q Consensus 123 a~AraA~~~gi--~~~lss~ss~sleeia~~~~~~~w~Qly------------------~~~d~~~-~~~ll~rAe~aG~ 181 (203)
.+++.-++.|. ..+++|+....++.+.+..|...-..++ .+.-..+ ..++++++.++|.
T Consensus 116 ~v~~~l~~~~~~~~v~i~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~G~ 195 (248)
T 1zcc_A 116 KVAALVRHLGMVRDTFYFSFSEEMRQGLQSIAPEFRRMMTLDIAKSPSLVGAVHHASIIEITPAQMRRPGIIEASRKAGL 195 (248)
T ss_dssp HHHHHHHHHTCSTTEEEECSCHHHHHHHHHHCTTSEEEEEHHHHSSTHHHHHTTCCSEEEECHHHHHSHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCCCCEEEEECCHHHHHHHHHHCCCCcEEEEecCCccHHHHHHHcCCCEEEecHHHhCCHHHHHHHHHCCC
Confidence 34444444332 3566777666666666654432111111 1111233 5789999999999
Q ss_pred cEEEEeecCC
Q 028827 182 KALVLTADTP 191 (203)
Q Consensus 182 ~AlvvTVD~p 191 (203)
+..+.|||.+
T Consensus 196 ~v~~wTvn~~ 205 (248)
T 1zcc_A 196 EIMVYYGGDD 205 (248)
T ss_dssp EEEEECCCCC
T ss_pred EEEEECCCCH
Confidence 9999999875
No 122
>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0
Probab=34.72 E-value=24 Score=30.20 Aligned_cols=66 Identities=17% Similarity=0.185 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHhcCCeEEecCCC----C-CCHHHH-------Hh--hcCCceeEEEeeeCCHHHHHHHHHHHHHcCCcEE
Q 028827 119 EGEVATARAAASCNTIMVLSFTS----S-SSIEEV-------AA--SCNAVRFYQLYVFKKRDIAATLVQRAERNGFKAL 184 (203)
Q Consensus 119 ~gE~a~AraA~~~gi~~~lss~s----s-~sleei-------a~--~~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~Al 184 (203)
+.-.++.+||++.+.|.++.... - ..++.+ ++ ...-|-.++| |.....+.+++|.++||.-+
T Consensus 32 e~~~avi~AAee~~sPvIlq~s~~~~~~~~g~~~~~~~v~~~A~~~~~~VPValHl----DHg~~~e~i~~ai~~GFtSV 107 (288)
T 3q94_A 32 EWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIHL----DHGSSFEKCKEAIDAGFTSV 107 (288)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEHHHHHHTSCHHHHHHHHHHHHHHTTCCSCEEEEE----EEECSHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHHHhCCCEEEECChhhhhhcCCHHHHHHHHHHHHHhcCCCCcEEEEC----CCCCCHHHHHHHHHcCCCeE
Confidence 44467778888888887775210 0 123222 22 2223444444 55555667777888888777
Q ss_pred EEee
Q 028827 185 VLTA 188 (203)
Q Consensus 185 vvTV 188 (203)
.++-
T Consensus 108 MiDg 111 (288)
T 3q94_A 108 MIDA 111 (288)
T ss_dssp EECC
T ss_pred EEeC
Confidence 6643
No 123
>3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis}
Probab=33.53 E-value=35 Score=29.53 Aligned_cols=67 Identities=18% Similarity=0.239 Sum_probs=37.2
Q ss_pred chHHHHHHHHHHhcCCeEEecCCC------CCC----HHHHHhhcCCceeEEEeeeCCHHHHHHHHHHHHHc--------
Q 028827 118 PEGEVATARAAASCNTIMVLSFTS------SSS----IEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERN-------- 179 (203)
Q Consensus 118 p~gE~a~AraA~~~gi~~~lss~s------s~s----leeia~~~~~~~w~Qly~~~d~~~~~~ll~rAe~a-------- 179 (203)
.+.-.++.+||++.+.|.++.... ... +.++++...-|-.+.| |.....+++++|.++
T Consensus 37 ~e~~~Avl~AAee~~sPvIlq~s~g~~~y~g~~~~~~~~~~A~~~~VPVaLHl----DHg~~~e~i~~ai~~~~~~~~~~ 112 (306)
T 3pm6_A 37 LEGILAIIRAAEHKRSPAMILLFPWAIQYADSLLVRTAASACRAASVPITLHL----DHAQDPEIIKRAADLSRSETHEP 112 (306)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECHHHHHHHTTHHHHHHHHHHHHCSSCEEEEE----EEECCHHHHHHHHHTC------C
T ss_pred HHHHHHHHHHHHHhCCCEEEEcChhHHhhccHHHHHHHHHHHHHCCCCEEEEc----CCCCCHHHHHHHHHhhhhccCCC
Confidence 345577788888888887775221 111 1122222233444444 555455667777777
Q ss_pred CCcEEEEee
Q 028827 180 GFKALVLTA 188 (203)
Q Consensus 180 G~~AlvvTV 188 (203)
||.-+.++-
T Consensus 113 GFtSVMiDg 121 (306)
T 3pm6_A 113 GFDSIMVDM 121 (306)
T ss_dssp CCSEEEECC
T ss_pred CCCEEEEeC
Confidence 888776643
No 124
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=33.49 E-value=75 Score=20.75 Aligned_cols=34 Identities=35% Similarity=0.496 Sum_probs=27.0
Q ss_pred CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 028827 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 154 ~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
+....++=+..+++...+++++..+.|++++++.
T Consensus 44 ~~yRV~vGpf~~~~~A~~~~~~L~~~g~~~~iv~ 77 (79)
T 1x60_A 44 GLYKVQIGAFSSKDNADTLAARAKNAGFDAIVIL 77 (79)
T ss_dssp TEEEEEEEEESSHHHHHHHHHHHHHHTSCCEEEE
T ss_pred cEEEEEECCcCCHHHHHHHHHHHHHcCCceEEEe
Confidence 3344555567899999999999999999998875
No 125
>3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum}
Probab=33.27 E-value=95 Score=26.84 Aligned_cols=89 Identities=16% Similarity=0.093 Sum_probs=54.5
Q ss_pred cccCcceEecccc----chhc---cCchHHHHHHHHHHhcCCe----EEecCCCCCCHHHHHhhcCCceeEEEeeeC--C
Q 028827 99 YKISAPIIIAPTA----LHKL---ANPEGEVATARAAASCNTI----MVLSFTSSSSIEEVAASCNAVRFYQLYVFK--K 165 (203)
Q Consensus 99 ~~~s~Pi~iaP~g----~~~l---~hp~gE~a~AraA~~~gi~----~~lss~ss~sleeia~~~~~~~w~Qly~~~--d 165 (203)
+++.+|+++-|+. +.++ ..|+-=...+|.|.++|.- ++=-.+ +.++++|.++++-| |+=+==.+ |
T Consensus 173 ~~~GlP~~~ep~~y~r~gg~v~~~~dp~~Va~aaRiAaELGADs~~tivK~~y-~e~f~~Vv~a~~vP-VViaGG~k~~~ 250 (307)
T 3fok_A 173 AAAQLPIMLEPFMSNWVNGKVVNDLSTDAVIQSVAIAAGLGNDSSYTWMKLPV-VEEMERVMESTTMP-TLLLGGEGGND 250 (307)
T ss_dssp HHTTCCEEEEEEEEEEETTEEEECCSHHHHHHHHHHHHTCSSCCSSEEEEEEC-CTTHHHHGGGCSSC-EEEECCSCC--
T ss_pred HHcCCcEEEEeeccccCCCCcCCCCCHHHHHHHHHHHHHhCCCcCCCEEEeCC-cHHHHHHHHhCCCC-EEEeCCCCCCC
Confidence 4566777776532 1222 1344446788888888865 222122 26789999888643 33222123 5
Q ss_pred HHHHHHHHHHHHH-cCCcEEEEeec
Q 028827 166 RDIAATLVQRAER-NGFKALVLTAD 189 (203)
Q Consensus 166 ~~~~~~ll~rAe~-aG~~AlvvTVD 189 (203)
.+...++++.|.+ +|+..+++.=+
T Consensus 251 ~~e~L~~v~~A~~~aGa~Gv~vGRN 275 (307)
T 3fok_A 251 PDATFASWEHALTLPGVRGLTVGRT 275 (307)
T ss_dssp CHHHHHHHHHHTTSTTEEEEEECTT
T ss_pred HHHHHHHHHHHHHhCCCeEEeechh
Confidence 6778889999999 79998887543
No 126
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}
Probab=33.19 E-value=73 Score=27.51 Aligned_cols=27 Identities=19% Similarity=0.128 Sum_probs=19.7
Q ss_pred CCCCHHHHHHHHHHhCChhhhhhhcCCc
Q 028827 34 EPVNLNEFQELARLALPKMYYDFYAGGA 61 (203)
Q Consensus 34 ~~~~~~d~~~~Ar~~Lp~~~~~Y~~gGa 61 (203)
+..++++..+.|++-+..+ -++|+=|.
T Consensus 44 ~~~~~~~al~~A~~~v~~G-AdIIDIGg 70 (314)
T 3tr9_A 44 PHLDLNSALRTAEKMVDEG-ADILDIGG 70 (314)
T ss_dssp BCCSHHHHHHHHHHHHHTT-CSEEEEEC
T ss_pred ccCCHHHHHHHHHHHHHCC-CCEEEECC
Confidence 5578899999999888554 47776443
No 127
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=32.69 E-value=70 Score=27.94 Aligned_cols=34 Identities=9% Similarity=0.094 Sum_probs=26.1
Q ss_pred CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 028827 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 154 ~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
-|.+.=+-+.-+.+.+.++.+.++++|+++|+++
T Consensus 221 ~Pv~vKi~p~~~~~~~~~ia~~~~~aGadgi~v~ 254 (367)
T 3zwt_A 221 PAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVT 254 (367)
T ss_dssp CEEEEEECSCCCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 3445545444566788899999999999999986
No 128
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=32.68 E-value=2.3e+02 Score=24.67 Aligned_cols=89 Identities=12% Similarity=-0.039 Sum_probs=54.1
Q ss_pred CcceEeccccchhccCchHHHHHHHHHHhcCCe--EEecCC---CCCCHHHHH---h----hcCC--ceeEEEeeeCCHH
Q 028827 102 SAPIIIAPTALHKLANPEGEVATARAAASCNTI--MVLSFT---SSSSIEEVA---A----SCNA--VRFYQLYVFKKRD 167 (203)
Q Consensus 102 s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~--~~lss~---ss~sleeia---~----~~~~--~~w~Qly~~~d~~ 167 (203)
-.|-++.|+.-.+-...++-..+++---+.|+- +++||- .+.+.||-. + +..+ +...++- ..+-.
T Consensus 63 i~~alvTPF~~dg~ID~~al~~lv~~li~~Gv~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg-~~st~ 141 (360)
T 4dpp_A 63 VITAIKTPYLPDGRFDLEAYDDLVNIQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIGNTG-SNSTR 141 (360)
T ss_dssp EEEECCCCBCTTSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECC-CSSHH
T ss_pred eEEEEeCcCCCCCCcCHHHHHHHHHHHHHcCCCEEEecccccChhhCCHHHHHHHHHHHHHHhCCCCeEEEecC-CCCHH
Confidence 346667787544445666667777777777874 444543 234555432 2 2233 2222221 24677
Q ss_pred HHHHHHHHHHHcCCcEEEEeecCCCC
Q 028827 168 IAATLVQRAERNGFKALVLTADTPRL 193 (203)
Q Consensus 168 ~~~~ll~rAe~aG~~AlvvTVD~p~~ 193 (203)
.+.++.++|+++|++++++. +|..
T Consensus 142 eai~la~~A~~~Gadavlvv--~PyY 165 (360)
T 4dpp_A 142 EAIHATEQGFAVGMHAALHI--NPYY 165 (360)
T ss_dssp HHHHHHHHHHHTTCSEEEEE--CCCS
T ss_pred HHHHHHHHHHHcCCCEEEEc--CCCC
Confidence 88899999999999999887 4444
No 129
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=32.41 E-value=1.7e+02 Score=24.86 Aligned_cols=83 Identities=20% Similarity=0.106 Sum_probs=49.6
Q ss_pred ceEeccccchhccCchHHHHHHHHHHhcCCe--EEecCC---CCCCHHHHH-------hhcCC--ceeEEEeeeCCHHHH
Q 028827 104 PIIIAPTALHKLANPEGEVATARAAASCNTI--MVLSFT---SSSSIEEVA-------ASCNA--VRFYQLYVFKKRDIA 169 (203)
Q Consensus 104 Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~--~~lss~---ss~sleeia-------~~~~~--~~w~Qly~~~d~~~~ 169 (203)
|.++.|+--.+-.+.++-..+++---+.|+- +++||- .+.+.||-. ++..+ +.+.++- ..+-..+
T Consensus 40 ~a~vTPF~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg-~~st~ea 118 (332)
T 2r8w_A 40 AFPITPADEAGRVDIEAFSALIARLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAATILRGRRTLMAGIG-ALRTDEA 118 (332)
T ss_dssp ECCCCCBCTTCCBCHHHHHHHHHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEEC-CSSHHHH
T ss_pred EEeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CCCHHHH
Confidence 5556665333334556666777766667763 345553 334555432 22232 3333332 2356778
Q ss_pred HHHHHHHHHcCCcEEEEe
Q 028827 170 ATLVQRAERNGFKALVLT 187 (203)
Q Consensus 170 ~~ll~rAe~aG~~AlvvT 187 (203)
.++.+.|+++|++++++.
T Consensus 119 i~la~~A~~~Gadavlv~ 136 (332)
T 2r8w_A 119 VALAKDAEAAGADALLLA 136 (332)
T ss_dssp HHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHhcCCCEEEEC
Confidence 889999999999999887
No 130
>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*
Probab=32.05 E-value=31 Score=29.78 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=13.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEe
Q 028827 165 KRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 165 d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
|+....+.+++|.++||.-++++
T Consensus 80 DHg~~~e~~~~ai~~GFtSVMiD 102 (305)
T 1rvg_A 80 DHGSSYESVLRALRAGFTSVMID 102 (305)
T ss_dssp EEECSHHHHHHHHHTTCSEEEEC
T ss_pred CCCCCHHHHHHHHHcCCCeeeeC
Confidence 44444556666666666665544
No 131
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=32.03 E-value=1.8e+02 Score=25.00 Aligned_cols=83 Identities=11% Similarity=0.066 Sum_probs=49.0
Q ss_pred ceEeccccchhccCchHHHHHHHHHHhcCC--eEEecC---CCCCCHHHHHh---h-c-C-CceeEEEeeeCCHHHHHHH
Q 028827 104 PIIIAPTALHKLANPEGEVATARAAASCNT--IMVLSF---TSSSSIEEVAA---S-C-N-AVRFYQLYVFKKRDIAATL 172 (203)
Q Consensus 104 Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi--~~~lss---~ss~sleeia~---~-~-~-~~~w~Qly~~~d~~~~~~l 172 (203)
|.++.|+--.+-.+.++-..+++--.+.|+ .+++|| +.+.+.||-.+ . . + -+.+.++- ..+-..+.++
T Consensus 32 ~alvTPF~~dg~ID~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~~~grvpViaGvg-~~st~eai~l 110 (344)
T 2hmc_A 32 PALMTPCRQDRTPDFDALVRKGKELIADGMSAVVYCGSMGDWPLLTDEQRMEGVERLVKAGIPVIVGTG-AVNTASAVAH 110 (344)
T ss_dssp EBCCCCBCTTSSBCHHHHHHHHHHHHHTTCCCEEESSGGGTGGGSCHHHHHHHHHHHHHTTCCEEEECC-CSSHHHHHHH
T ss_pred EeeeCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCccCcChhhCCHHHHHHHHHHHhCCCCcEEEecC-CCCHHHHHHH
Confidence 555666533333455666677776666776 334454 34456654322 1 2 2 23333331 2356778889
Q ss_pred HHHHHHcCCcEEEEe
Q 028827 173 VQRAERNGFKALVLT 187 (203)
Q Consensus 173 l~rAe~aG~~AlvvT 187 (203)
.+.|+++|++++++.
T Consensus 111 a~~A~~~Gadavlv~ 125 (344)
T 2hmc_A 111 AVHAQKVGAKGLMVI 125 (344)
T ss_dssp HHHHHHHTCSEEEEC
T ss_pred HHHHHhcCCCEEEEC
Confidence 999999999998887
No 132
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G*
Probab=30.95 E-value=1.7e+02 Score=31.65 Aligned_cols=89 Identities=12% Similarity=0.122 Sum_probs=50.7
Q ss_pred eeecCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHH----Hh---hcC--CceeEEE-eee
Q 028827 94 TTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEV----AA---SCN--AVRFYQL-YVF 163 (203)
Q Consensus 94 t~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleei----a~---~~~--~~~w~Ql-y~~ 163 (203)
|++||. .||+.+||+... ....++.|..++|-.-.+...+..+.|++ .+ ..+ .+.-+-+ |+.
T Consensus 584 t~llg~---~PIi~~gM~~~~-----~~~~lvaAvsnAGglg~l~~~~~~~~e~l~~~I~~~~~~t~~~~~~gvN~~~~~ 655 (2051)
T 2uv8_G 584 SKLIGR---PPLLVPGMTPCT-----VSPDFVAATTNAGYTIELAGGGYFSAAGMTAAIDSVVSQIEKGSTFGINLIYVN 655 (2051)
T ss_dssp HHHHSS---CSEEECCCHHHH-----TCHHHHHHHHHTTCEEEEEGGGCCSHHHHHHHHHHHHHHSCTTCCEEEEEETTC
T ss_pred HHhhCc---cceecCCCcccc-----ccHHHHHHHHcCCcEEEEccCCCCCHHHHHHHHHHHHHhcCCCCceEEEEeecC
Confidence 557993 699999987322 13456788888887777743333334433 32 222 2322222 222
Q ss_pred CC-HHHHHHHHHHHHHcCCcEEEEeecC
Q 028827 164 KK-RDIAATLVQRAERNGFKALVLTADT 190 (203)
Q Consensus 164 ~d-~~~~~~ll~rAe~aG~~AlvvTVD~ 190 (203)
.+ .....++++.+.+.|++.-.|++-+
T Consensus 656 ~~~~~~~~~~~~~~~~~gv~i~~v~~~a 683 (2051)
T 2uv8_G 656 PFMLQWGIPLIKELRSKGYPIQFLTIGA 683 (2051)
T ss_dssp TTHHHHHHHHHHHHHHTTCSEEEEEEES
T ss_pred hhhhhhhHHHHHHHHHcCCCcceEEecC
Confidence 21 1122388999999999985555543
No 133
>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis}
Probab=30.86 E-value=33 Score=27.84 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHcCCcEEEEeecCC
Q 028827 168 IAATLVQRAERNGFKALVLTADTP 191 (203)
Q Consensus 168 ~~~~ll~rAe~aG~~AlvvTVD~p 191 (203)
++.++++++.++|.+..+.|||.+
T Consensus 199 ~~~~~v~~~~~~G~~v~~wTvn~~ 222 (252)
T 2pz0_A 199 IIPELVEGCKKNGVKLFPWTVDRK 222 (252)
T ss_dssp CCHHHHHHHHHTTCEECCBCCCSH
T ss_pred CCHHHHHHHHHCCCEEEEECCCCH
Confidence 346788899999999999998864
No 134
>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1
Probab=30.52 E-value=1e+02 Score=25.90 Aligned_cols=23 Identities=30% Similarity=0.255 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHcCCc--EEEEee
Q 028827 166 RDIAATLVQRAERNGFK--ALVLTA 188 (203)
Q Consensus 166 ~~~~~~ll~rAe~aG~~--AlvvTV 188 (203)
.+...+.+++|+++|++ -|+++-
T Consensus 154 ~~~l~~~i~~a~~~Gi~~~~IilDP 178 (280)
T 1eye_A 154 RADLLASVADAVAAGVDPARLVLDP 178 (280)
T ss_dssp HHHHHHHHHHHHHTTCCGGGEEEEC
T ss_pred HHHHHHHHHHHHHcCCChhhEEEEC
Confidence 56677899999999998 688775
No 135
>2vd3_A ATP phosphoribosyltransferase; metal-binding, glycosyltransferase, HISG, histidine, magnesi transferase; HET: HIS; 2.45A {Methanobacterium thermoautotrophicum}
Probab=30.48 E-value=75 Score=27.16 Aligned_cols=59 Identities=10% Similarity=0.124 Sum_probs=44.3
Q ss_pred HhcCCeEEecCCCCCCHHHHHhhcC---C---------ceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 028827 129 ASCNTIMVLSFTSSSSIEEVAASCN---A---------VRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 129 ~~~gi~~~lss~ss~sleeia~~~~---~---------~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
.+.+-.++.=+.....++++.+..| + ..|+.+...-+++...+++.+.+++|++.|+++
T Consensus 212 ~A~~~~~~~~n~p~~~l~~v~~~lPg~~~PTV~~l~~~~~w~aV~~vv~~~~~~~~~~~Lk~~GA~~Ilv~ 282 (289)
T 2vd3_A 212 DAEGKRLVMLNIDRKNLDRVRALMPGMTGPTVSEVLSDNGVVAVHAVVDEKEVFNLINRLKAVGARDILVV 282 (289)
T ss_dssp HTTTEEEEEEEEEGGGHHHHHHHCCCSSSCEEEECCSSSCEEEEEEEEETTTHHHHHHHHHTTTCEEEEEE
T ss_pred HhccEEEEEEeCCHHHHHHHHHhcccCCCCceecccCCCCEEEEEEEEcHHHHHHHHHHHHHcCCCeEEEe
Confidence 3344555555566778999988653 1 258777777788899999999999999999875
No 136
>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A*
Probab=30.17 E-value=24 Score=30.54 Aligned_cols=23 Identities=13% Similarity=0.364 Sum_probs=13.5
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEe
Q 028827 165 KRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 165 d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
|+....+.+++|.++||.-+.++
T Consensus 82 DHg~~~e~~~~ai~~GFtSVMiD 104 (307)
T 3n9r_A 82 DHGTTFESCEKAVKAGFTSVMID 104 (307)
T ss_dssp EEECSHHHHHHHHHHTCSEEEEC
T ss_pred CCCCCHHHHHHHHHhCCCcEEEE
Confidence 44444566666666676666553
No 137
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=29.59 E-value=1.5e+02 Score=24.65 Aligned_cols=83 Identities=13% Similarity=0.034 Sum_probs=47.8
Q ss_pred ceEeccccchhccCchHHHHHHHHHHhcCCe--EEecCC---CCCCHHHHH-------hhcCC--ceeEEEeeeCCHHHH
Q 028827 104 PIIIAPTALHKLANPEGEVATARAAASCNTI--MVLSFT---SSSSIEEVA-------ASCNA--VRFYQLYVFKKRDIA 169 (203)
Q Consensus 104 Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~--~~lss~---ss~sleeia-------~~~~~--~~w~Qly~~~d~~~~ 169 (203)
|.++.|+--.+-.+.++-..+++--.+.|+- +.+||- .+.+.||-. ++..+ +.+.++- ..+-..+
T Consensus 7 ~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg-~~~t~~a 85 (292)
T 2ojp_A 7 VAIVTPMDEKGNVCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTG-ANATAEA 85 (292)
T ss_dssp EECCCCBCTTSCBCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSSHHHH
T ss_pred eeeeccCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CccHHHH
Confidence 4556665333334556666777766666763 344543 334555432 22232 3333321 2356777
Q ss_pred HHHHHHHHHcCCcEEEEe
Q 028827 170 ATLVQRAERNGFKALVLT 187 (203)
Q Consensus 170 ~~ll~rAe~aG~~AlvvT 187 (203)
.++.+.|+++|++++++.
T Consensus 86 i~la~~a~~~Gadavlv~ 103 (292)
T 2ojp_A 86 ISLTQRFNDSGIVGCLTV 103 (292)
T ss_dssp HHHHHHTTTSSCSEEEEE
T ss_pred HHHHHHHHhcCCCEEEEC
Confidence 888999999999999887
No 138
>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A
Probab=29.48 E-value=92 Score=26.53 Aligned_cols=41 Identities=20% Similarity=0.181 Sum_probs=28.3
Q ss_pred cchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHhh
Q 028827 111 ALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAAS 151 (203)
Q Consensus 111 g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~~ 151 (203)
+++++.-.+|=..+.+.+.+.|++++..-+...+++.+.+.
T Consensus 67 sf~Glg~~~GL~~L~~~~~e~Glp~~tev~d~~~v~~l~~~ 107 (288)
T 3tml_A 67 SFRGLGMDEGLRILSEVKRQLGLPVLTDVHSIDEIEQVASV 107 (288)
T ss_dssp -----CHHHHHHHHHHHHHHHCCCEEEECCSGGGHHHHHHH
T ss_pred CcCCcCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHh
Confidence 34444214676789999999999999988888888777654
No 139
>4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D*
Probab=29.24 E-value=91 Score=26.98 Aligned_cols=87 Identities=13% Similarity=0.209 Sum_probs=51.4
Q ss_pred cCcceEeccccchhccCchHHHHHHHHHHhcCC---eEEecCCCCCCHHHHHhhc---CCceeEEEeeeCCHHHHHHHHH
Q 028827 101 ISAPIIIAPTALHKLANPEGEVATARAAASCNT---IMVLSFTSSSSIEEVAASC---NAVRFYQLYVFKKRDIAATLVQ 174 (203)
Q Consensus 101 ~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi---~~~lss~ss~sleeia~~~---~~~~w~Qly~~~d~~~~~~ll~ 174 (203)
+..||.|--+ .+|.-+..++++|.++|. +++-| .+....+++.+.+ +.+. . +-.+.|.+..+++++
T Consensus 128 ~~vPlsIDg~-----~~~T~~~eV~eaAleagag~~~lINs-v~~~~~~~m~~laa~~g~~v-V-lmh~~d~~~~~~l~~ 199 (323)
T 4djd_D 128 VGVPLVVVGC-----GDVEKDHEVLEAVAEAAAGENLLLGN-AEQENYKSLTAACMVHKHNI-I-ARSPLDINICKQLNI 199 (323)
T ss_dssp CCSCEEEECC-----SCHHHHHHHHHHHHHHTTTSCCEEEE-EBTTBCHHHHHHHHHHTCEE-E-EECSSCHHHHHHHHH
T ss_pred CCceEEEECC-----CCCCCCHHHHHHHHHhcCCCCCeEEE-CCcccHHHHHHHHHHhCCeE-E-EEccchHHHHHHHHH
Confidence 4567777522 255666677777777662 23333 2222345554433 3321 1 112457889999999
Q ss_pred HHHHcCC--cEEEEeecCCCCCC
Q 028827 175 RAERNGF--KALVLTADTPRLGR 195 (203)
Q Consensus 175 rAe~aG~--~AlvvTVD~p~~g~ 195 (203)
+|.++|. +-|+++-=.-.+|+
T Consensus 200 ~a~~~GI~~e~IIlDPg~g~fgk 222 (323)
T 4djd_D 200 LINEMNLPLDHIVIDPSIGGLGY 222 (323)
T ss_dssp HHHTTTCCGGGEEEECCCCCTTT
T ss_pred HHHHcCCCHHHEEEeCCCccccC
Confidence 9999999 66988755443444
No 140
>2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule biogenesis/degradation, manganese, hydrolase, exopolysaccharide synthesis; 1.90A {Streptococcus pneumoniae} PDB: 2wjd_A 2wjf_A 3qy8_A
Probab=29.23 E-value=30 Score=27.90 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEee
Q 028827 165 KRDIAATLVQRAERNGFKALVLTA 188 (203)
Q Consensus 165 d~~~~~~ll~rAe~aG~~AlvvTV 188 (203)
+.+.+.+++++|.+.|.+.|++|=
T Consensus 22 ~~e~~~e~i~~A~~~Gi~~i~~Td 45 (247)
T 2wje_A 22 SREESKALLAESYRQGVRTIVSTS 45 (247)
T ss_dssp SHHHHHHHHHHHHHTTEEEEECCC
T ss_pred CHHHHHHHHHHHHHCCCCEEEECC
Confidence 456777899999999999999874
No 141
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=28.83 E-value=96 Score=27.65 Aligned_cols=39 Identities=15% Similarity=0.319 Sum_probs=27.9
Q ss_pred hhcccccccccc-CCCCCCcceeec-CcccCcceEeccccc
Q 028827 74 FHRITFRPRILV-DVSRIDLSTTIL-DYKISAPIIIAPTAL 112 (203)
Q Consensus 74 f~~i~L~pRvL~-dv~~~dtst~l~-G~~~s~Pi~iaP~g~ 112 (203)
|++|.|.|..-. +-.++|++++|. +..+..||+.+|+..
T Consensus 19 ~~dvll~p~~s~~~p~~v~~~~eLt~~~~l~iP~is~~m~~ 59 (494)
T 1vrd_A 19 FDDVLLVPQYSEVLPKDVKIDTRLTRQIRINIPLVSAAMDT 59 (494)
T ss_dssp GGGEEECCCCCCCCGGGSCCCEESSSSCEESSSEEECCCTT
T ss_pred cccEEeccccccCCCCceEEEehhhCCCccCceeEecchHH
Confidence 788888865322 224678888885 567788999999753
No 142
>2anu_A Hypothetical protein TM0559; predicted metal-dependent phosphoesterase (PHP famil structural genomics, joint center for structural genomics; 2.40A {Thermotoga maritima} SCOP: c.6.3.1
Probab=28.58 E-value=41 Score=27.16 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHcCCcEEEEe
Q 028827 168 IAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 168 ~~~~ll~rAe~aG~~AlvvT 187 (203)
..++++++|++.|++.|++|
T Consensus 36 t~ee~v~~A~~~Gl~~i~iT 55 (255)
T 2anu_A 36 PLGEVVDLFGKHGVDVVSIT 55 (255)
T ss_dssp CHHHHHHHHHHTTCSEEEEE
T ss_pred CHHHHHHHHHHCCCCEEEEc
Confidence 35679999999999999998
No 143
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=28.58 E-value=1.6e+02 Score=25.64 Aligned_cols=66 Identities=21% Similarity=0.160 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHhcCCeEEecCC---CCCCHHHHHhhcC--CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 028827 119 EGEVATARAAASCNTIMVLSFT---SSSSIEEVAASCN--AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 119 ~gE~a~AraA~~~gi~~~lss~---ss~sleeia~~~~--~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
.|+.++|+++.++|+-++.+-- ++.=+|.+.+..+ +..++ ...+......+.-=|..+|.++++.|
T Consensus 24 ~GneAva~~~~~ag~~~v~~yPgtP~t~i~~~l~~~~~~~g~~~i---~~e~E~~a~~~a~Gaa~aG~r~~~~t 94 (395)
T 1yd7_A 24 QGDEAIARAAILAGCRFYAGYPITPASEIFEAMALYMPLVDGVVI---QMEDEIASIAAAIGASWAGAKAMTAT 94 (395)
T ss_dssp EHHHHHHHHHHHHTCCEEEECCBTTTBCHHHHHHHHGGGGTCEEE---ECSCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EHHHHHHHHHHHcCCCEEEEEECcchHHHHHHHHHhhhhcCcEEE---EeCCHHHHHHHHHHHHHhCCcEEEEe
Confidence 6999999999999998777643 2222355554222 34333 34577777788888888999977654
No 144
>1xx1_A Smase I, sphingomyelinase I; structure, quick cryo-soaking, activity, smase D, hydrolase; HET: EPE; 1.75A {Loxosceles laeta} PDB: 2f9r_A*
Probab=28.28 E-value=29 Score=28.49 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHcCC--cEEEEeecCC
Q 028827 167 DIAATLVQRAERNGF--KALVLTADTP 191 (203)
Q Consensus 167 ~~~~~ll~rAe~aG~--~AlvvTVD~p 191 (203)
.+..++++++.++|. +..+.|||.+
T Consensus 209 ~~~~~~v~~~~~~Glg~~V~~WTvn~~ 235 (285)
T 1xx1_A 209 RLKEAIKSRDSANGFINKIYYWSVDKV 235 (285)
T ss_dssp HHHHHHHHHTSTTCCCCEEEEECCCSH
T ss_pred HHhHHHHHHHHhcCCCCeEEEeeCCCH
Confidence 456778888899999 9999999875
No 145
>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A
Probab=28.14 E-value=54 Score=25.98 Aligned_cols=58 Identities=9% Similarity=0.011 Sum_probs=35.7
Q ss_pred eEEecCCCCCCHHHHHhhcCCceeEEEe----------------eeCCHHHHHHHHHHHHHcCCcEEEEeecCC
Q 028827 134 IMVLSFTSSSSIEEVAASCNAVRFYQLY----------------VFKKRDIAATLVQRAERNGFKALVLTADTP 191 (203)
Q Consensus 134 ~~~lss~ss~sleeia~~~~~~~w~Qly----------------~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p 191 (203)
..+++|+....++.+.+..|...-.+++ .+.-.....++++++.++|.+..+.|||.+
T Consensus 124 ~v~i~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~v~~~~~~G~~v~~wtvn~~ 197 (224)
T 1vd6_A 124 GVWVSSFDPLALLALRKAAPGLPLGFLMAEDHSALLPCLGVEAVHPHHALVTEEAVAGWRKRGLFVVAWTVNEE 197 (224)
T ss_dssp SEEEEESCHHHHHHHHHHCTTSCEEEEESSCCGGGGGGSCCSEEEEBGGGCCHHHHHHHHHTTCEEEEECCCCH
T ss_pred cEEEEeCCHHHHHHHHHHCCCCCEEEEeccccHHHHHHcCCcEEecCcccCCHHHHHHHHHCCCEEEEEeCCCH
Confidence 4566666666666666654432111111 111223457899999999999999999864
No 146
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=27.75 E-value=1.9e+02 Score=24.02 Aligned_cols=82 Identities=13% Similarity=0.040 Sum_probs=50.9
Q ss_pred ceEeccccchhccCchHHHHHHHHHHhcCCe--EEecC---CCCCCHHHH---H----hhcCC--ceeEEEeeeCCHHHH
Q 028827 104 PIIIAPTALHKLANPEGEVATARAAASCNTI--MVLSF---TSSSSIEEV---A----ASCNA--VRFYQLYVFKKRDIA 169 (203)
Q Consensus 104 Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~--~~lss---~ss~sleei---a----~~~~~--~~w~Qly~~~d~~~~ 169 (203)
|.++.|+--. -.+.++-..+++--.+.|+- +++|| +.+.+.||- . ++..+ +.+.++- ..+-..+
T Consensus 9 ~a~vTPf~~d-~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~a 86 (292)
T 3daq_A 9 VALTTPFTNN-KVNLEALKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDKRVPVIAGTG-TNDTEKS 86 (292)
T ss_dssp EECCCCEETT-EECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSCHHHH
T ss_pred EeeecCcCCC-CcCHHHHHHHHHHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCcEEEeCC-cccHHHH
Confidence 5566676433 34667777777777777873 33444 234455543 2 22222 3333321 2467778
Q ss_pred HHHHHHHHHcCCcEEEEe
Q 028827 170 ATLVQRAERNGFKALVLT 187 (203)
Q Consensus 170 ~~ll~rAe~aG~~AlvvT 187 (203)
.++.+.|+++|++++++.
T Consensus 87 i~la~~a~~~Gadavlv~ 104 (292)
T 3daq_A 87 IQASIQAKALGADAIMLI 104 (292)
T ss_dssp HHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHcCCCEEEEC
Confidence 899999999999999887
No 147
>4djd_C C/Fe-SP, corrinoid/iron-sulfur protein large subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_C* 4djf_C*
Probab=27.06 E-value=71 Score=29.04 Aligned_cols=45 Identities=24% Similarity=0.176 Sum_probs=30.0
Q ss_pred CCCHHHHHhhc---CCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeec
Q 028827 142 SSSIEEVAASC---NAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTAD 189 (203)
Q Consensus 142 s~sleeia~~~---~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD 189 (203)
...+|++++.+ +.+.- -+..|.+..++++++|.++|++-|+++-=
T Consensus 187 ~dn~e~m~~lAa~y~~pVi---~~~~dl~~lkelv~~a~~~GI~~IvLDPG 234 (446)
T 4djd_C 187 GANYEAMTALAKENNCPLA---VYGNGLEELAELVDKIVALGHKQLVLDPG 234 (446)
T ss_dssp TTTHHHHHHHHHHTTCCEE---EECSSHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred hhhHHHHHHHHHHcCCcEE---EEeccHHHHHHHHHHHHHCCCCcEEECCC
Confidence 34666665543 32211 11238899999999999999998877643
No 148
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=27.04 E-value=1e+02 Score=23.85 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=26.1
Q ss_pred CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCCC
Q 028827 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPR 192 (203)
Q Consensus 154 ~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p~ 192 (203)
..-++++|...|+++...|++. .+-|++.=+|+ |...
T Consensus 72 ~sI~i~~Y~~~~~~I~~aL~~A-a~RGV~VRii~-D~~~ 108 (220)
T 4gel_A 72 YSIDLAIYTFTSLFLADSIKRA-LQRGVIIRIIS-DGEM 108 (220)
T ss_dssp SEEEEECSCBCCHHHHHHHHHH-HHHTCEEEEEC-CTTT
T ss_pred hEEEEEEEEeCCHHHHHHHHHH-HHcCCeEEEEE-echh
Confidence 3356789999999888776664 45699766664 6543
No 149
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=26.84 E-value=1.2e+02 Score=25.31 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHcCCcE--EEEeecC
Q 028827 166 RDIAATLVQRAERNGFKA--LVLTADT 190 (203)
Q Consensus 166 ~~~~~~ll~rAe~aG~~A--lvvTVD~ 190 (203)
.+..++++++|+++|.+. |+++-=.
T Consensus 146 ~~~l~~~~~~a~~~Gi~~~~IilDPg~ 172 (271)
T 2yci_X 146 SQLAMELVANADAHGIPMTELYIDPLI 172 (271)
T ss_dssp HHHHHHHHHHHHHTTCCGGGEEEECCC
T ss_pred HHHHHHHHHHHHHCCCCcccEEEecCC
Confidence 456678888899999875 7776443
No 150
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*
Probab=26.82 E-value=1e+02 Score=27.61 Aligned_cols=32 Identities=6% Similarity=0.130 Sum_probs=25.1
Q ss_pred eeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 028827 156 RFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 156 ~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
.+.=|-+..+.+.+.++.+.++++|+++|+++
T Consensus 272 V~VKi~pd~~~~~i~~iA~~a~~aGaDgIiv~ 303 (415)
T 3i65_A 272 VFVKLAPDLNQEQKKEIADVLLETNIDGMIIS 303 (415)
T ss_dssp EEEEECSCCCHHHHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEecCCCCHHHHHHHHHHHHHcCCcEEEEe
Confidence 45555555566678999999999999999886
No 151
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=26.72 E-value=47 Score=27.43 Aligned_cols=14 Identities=29% Similarity=0.491 Sum_probs=10.3
Q ss_pred HHHHHHHHcCCcEE
Q 028827 171 TLVQRAERNGFKAL 184 (203)
Q Consensus 171 ~ll~rAe~aG~~Al 184 (203)
+.+++++++|+..|
T Consensus 138 ~~a~~~~~~gad~v 151 (264)
T 1xm3_A 138 VLARKLEELGVHAI 151 (264)
T ss_dssp HHHHHHHHHTCSCB
T ss_pred HHHHHHHHhCCCEE
Confidence 35777888888776
No 152
>1o1z_A GDPD, glycerophosphodiester phosphodiesterase; TM1621, glycerophosphodiester phosphodiesterase (GDPD), STRU genomics, JCSG, PSI; 1.60A {Thermotoga maritima} SCOP: c.1.18.3
Probab=26.67 E-value=1.8e+02 Score=23.14 Aligned_cols=22 Identities=18% Similarity=0.416 Sum_probs=20.0
Q ss_pred HHHHHHHHHcCCcEEEEeecCC
Q 028827 170 ATLVQRAERNGFKALVLTADTP 191 (203)
Q Consensus 170 ~~ll~rAe~aG~~AlvvTVD~p 191 (203)
.++++++.++|.+..+.|||.+
T Consensus 188 ~~~v~~~~~~G~~v~~wTvn~~ 209 (234)
T 1o1z_A 188 VEVLRSFRKKGIVIFVWTLNDP 209 (234)
T ss_dssp HHHHHHHHHTTCEEEEESCCCH
T ss_pred HHHHHHHHHcCCEEEEeCCCCH
Confidence 7899999999999999999864
No 153
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=26.30 E-value=2.9e+02 Score=23.18 Aligned_cols=84 Identities=13% Similarity=-0.003 Sum_probs=51.7
Q ss_pred ceEeccccchhccCchHHHHHHHHHHhcCCe--EEecCC---CCCCHHHHH-------hhcCC--ceeEEEeeeCCHHHH
Q 028827 104 PIIIAPTALHKLANPEGEVATARAAASCNTI--MVLSFT---SSSSIEEVA-------ASCNA--VRFYQLYVFKKRDIA 169 (203)
Q Consensus 104 Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~--~~lss~---ss~sleeia-------~~~~~--~~w~Qly~~~d~~~~ 169 (203)
|.++.|+--.+-.+.++-..+++--.+.|+- +++||- .+.+.||-. ++..+ +.+.++- ..+-..+
T Consensus 13 ~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpViaGvg-~~~t~~a 91 (311)
T 3h5d_A 13 TAFITPFHEDGSINFDAIPALIEHLLAHHTDGILLAGTTAESPTLTHDEELELFAAVQKVVNGRVPLIAGVG-TNDTRDS 91 (311)
T ss_dssp EECCCCBCTTSSBCTTHHHHHHHHHHHTTCCCEEESSTTTTGGGSCHHHHHHHHHHHHHHSCSSSCEEEECC-CSSHHHH
T ss_pred EeeecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCC-CcCHHHH
Confidence 5566676434445667777778777777874 445553 334555432 22232 3333331 2357778
Q ss_pred HHHHHHHHHcCC-cEEEEee
Q 028827 170 ATLVQRAERNGF-KALVLTA 188 (203)
Q Consensus 170 ~~ll~rAe~aG~-~AlvvTV 188 (203)
.++.+.|+++|+ +++++..
T Consensus 92 i~la~~A~~~Ga~davlv~~ 111 (311)
T 3h5d_A 92 IEFVKEVAEFGGFAAGLAIV 111 (311)
T ss_dssp HHHHHHHHHSCCCSEEEEEC
T ss_pred HHHHHHHHhcCCCcEEEEcC
Confidence 899999999997 9988863
No 154
>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri}
Probab=26.25 E-value=61 Score=25.96 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHcCCcEEEEeecCC
Q 028827 168 IAATLVQRAERNGFKALVLTADTP 191 (203)
Q Consensus 168 ~~~~ll~rAe~aG~~AlvvTVD~p 191 (203)
.+.++++++.++|.+..+.|||.+
T Consensus 195 ~~~~~v~~~~~~G~~v~~wTvn~~ 218 (247)
T 2otd_A 195 LDKARVMQLKDAGLRILVYTVNKP 218 (247)
T ss_dssp CCHHHHHHHHHTTCEEEEECCCCH
T ss_pred CCHHHHHHHHHCCCEEEEEccCCH
Confidence 346889999999999999999864
No 155
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=25.94 E-value=82 Score=24.78 Aligned_cols=25 Identities=8% Similarity=-0.007 Sum_probs=17.5
Q ss_pred eCCHHHHHHHHHHHHHcCCcEEEEe
Q 028827 163 FKKRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 163 ~~d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
..+.+..++.++.|.+.|++.|++.
T Consensus 87 ~~~~~~~~~~i~~A~~lGa~~v~~~ 111 (262)
T 3p6l_A 87 AEKSSDWEKMFKFAKAMDLEFITCE 111 (262)
T ss_dssp CSSTTHHHHHHHHHHHTTCSEEEEC
T ss_pred CccHHHHHHHHHHHHHcCCCEEEec
Confidence 3455667777777777777777775
No 156
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Probab=25.85 E-value=2.1e+02 Score=23.31 Aligned_cols=60 Identities=13% Similarity=0.140 Sum_probs=40.0
Q ss_pred cCCeEEecCCCC---CCHHHHHhhcCCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecC
Q 028827 131 CNTIMVLSFTSS---SSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADT 190 (203)
Q Consensus 131 ~gi~~~lss~ss---~sleeia~~~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~ 190 (203)
.|+...+..... .+++++.+......++=|.-..|..-+-.++|-|...|+++|+++=+.
T Consensus 78 qGv~a~~~~~~~~~~~~l~~~~~~~~~~~~lvLd~v~dp~NlGaI~Rta~a~G~~~vil~~~~ 140 (253)
T 1gz0_A 78 QGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDR 140 (253)
T ss_dssp TTEEEEECCCCCCCGGGHHHHHHTCSSCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEESSS
T ss_pred cEEEEEEeccccCcHHHHHHHHhccCCCEEEEEeCCCCcCcHHHHHHHHHHhCCCEEEEeCCC
Confidence 345555543332 245555432223455556667899999999999999999999996553
No 157
>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*
Probab=25.77 E-value=3.2e+02 Score=23.55 Aligned_cols=21 Identities=14% Similarity=0.268 Sum_probs=16.6
Q ss_pred HHHHHHHHHcCCcEEEEeecC
Q 028827 170 ATLVQRAERNGFKALVLTADT 190 (203)
Q Consensus 170 ~~ll~rAe~aG~~AlvvTVD~ 190 (203)
.+-.++|+++||++|=|+.-.
T Consensus 170 ~~AA~~a~~aGfDgVEih~a~ 190 (376)
T 1icp_A 170 RVAARNAIEAGFDGVEIHGAH 190 (376)
T ss_dssp HHHHHHHHHTTCSEEEEEECT
T ss_pred HHHHHHHHHcCCCEEEEcCcc
Confidence 345578899999999988753
No 158
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A*
Probab=25.59 E-value=95 Score=27.50 Aligned_cols=63 Identities=17% Similarity=0.189 Sum_probs=35.7
Q ss_pred HHHHHHHHhcCCeEEecCCCCCCHHHHHhhcCCceeEEEee---------------eCCHHHHHHHHHHHHHcCCcEEE
Q 028827 122 VATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYV---------------FKKRDIAATLVQRAERNGFKALV 185 (203)
Q Consensus 122 ~a~AraA~~~gi~~~lss~ss~sleeia~~~~~~~w~Qly~---------------~~d~~~~~~ll~rAe~aG~~Alv 185 (203)
......-++.|..+--.+.......++.+..+ ..|+-|.+ ..|.+.+.++++||+++|.+.++
T Consensus 30 is~~~~~e~~G~~y~~~~G~~~d~~~ilk~~G-~N~VRlrvwv~p~~~~g~~y~~g~~d~~~~~~~a~~Ak~~GLkVll 107 (399)
T 1ur4_A 30 VSSIIALEESGVAFYNESGKKQDIFKTLKEAG-VNYVRVRIWNDPYDANGNGYGGGNNDLEKAIQIGKRATANGMKLLA 107 (399)
T ss_dssp CTTHHHHHHTTCCCBCTTSCBCCHHHHHHHTT-CCEEEEEECSCCBCTTCCBCSTTCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred hhhhHHHHHcCCeeeCCCCccchHHHHHHHCC-CCEEEEeeecCCcccccCccCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 33344455677666443333344555554432 11222211 14578889999999999997554
No 159
>2z0r_A Putative uncharacterized protein TTHA0547; alpha/beta protein, structural genomics, unknown function; 2.30A {Thermus thermophilus}
Probab=25.40 E-value=1.6e+02 Score=21.35 Aligned_cols=43 Identities=7% Similarity=0.035 Sum_probs=35.5
Q ss_pred HHHhhcCCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecC
Q 028827 147 EVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADT 190 (203)
Q Consensus 147 eia~~~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~ 190 (203)
.+.+..|. .-+|+++..|+..-+++++-....|+.++.|+.+.
T Consensus 41 ~f~~~~p~-~Gm~V~~l~~w~lKE~~l~Al~~lgv~~~lvDy~P 83 (103)
T 2z0r_A 41 AFLAHHPH-LGMRVSALESRALKEAYLRALGMLQVEAVMVDYRP 83 (103)
T ss_dssp HHHHTSCS-SCCEEEEECSHHHHHHHHHHHHHTTCCEEEESCCS
T ss_pred HHHhhCCc-cccEEeecchhHHHHHHHHHHHHcCCcEEEEecCC
Confidence 34444465 45799999999999999999999999999998874
No 160
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=25.25 E-value=1.8e+02 Score=23.95 Aligned_cols=30 Identities=20% Similarity=0.184 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEeecCCCCC
Q 028827 164 KKRDIAATLVQRAERNGFKALVLTADTPRLG 194 (203)
Q Consensus 164 ~d~~~~~~ll~rAe~aG~~AlvvTVD~p~~g 194 (203)
.|.+...+++++++++|++.|.+- |+...+
T Consensus 152 ~~~~~~~~~~~~~~~~G~d~i~l~-Dt~G~~ 181 (295)
T 1ydn_A 152 VTPQAVASVTEQLFSLGCHEVSLG-DTIGRG 181 (295)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEE-ETTSCC
T ss_pred CCHHHHHHHHHHHHhcCCCEEEec-CCCCCc
Confidence 478888889999999999888887 765543
No 161
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7
Probab=24.96 E-value=2.9e+02 Score=22.70 Aligned_cols=69 Identities=16% Similarity=0.159 Sum_probs=42.2
Q ss_pred cCchHHHHHHHHHHhcCCeEEecCCCCCCH-HHHHhhcCCceeEE--EeeeC---CHHHHHHH----HHHHHHcCCcEEE
Q 028827 116 ANPEGEVATARAAASCNTIMVLSFTSSSSI-EEVAASCNAVRFYQ--LYVFK---KRDIAATL----VQRAERNGFKALV 185 (203)
Q Consensus 116 ~hp~gE~a~AraA~~~gi~~~lss~ss~sl-eeia~~~~~~~w~Q--ly~~~---d~~~~~~l----l~rAe~aG~~Alv 185 (203)
.+.+....+.+.+++.|+.|.=|--+..|. .++++..+ +.... +++.. |.+.+... +++|.+.|. ||+
T Consensus 112 ~~~~~m~~vm~~l~~~gL~fvDS~Ts~~S~a~~~A~~~g-vp~~~rdvFLD~~~~~~~~I~~ql~~a~~~A~~~G~-aIa 189 (245)
T 2nly_A 112 ENEKIMRAILEVVKEKNAFIIDSGTSPHSLIPQLAEELE-VPYATRSIFLDNTHSSRKEVIKNMRKLAKKAKQGSE-PIG 189 (245)
T ss_dssp GCHHHHHHHHHHHHHTTCEEEECCCCSSCSHHHHHHHTT-CCEEECCEESCCTTCCHHHHHHHHHHHHHHHHTTSC-CEE
T ss_pred cCHHHHHHHHHHHHHCCCEEEcCCCCcccHHHHHHHHcC-CCeEEeeEECCCCCCCHHHHHHHHHHHHHHHhhcCc-EEE
Confidence 466788899999999998887775554554 56666543 22223 44433 44555444 456666775 444
Q ss_pred E
Q 028827 186 L 186 (203)
Q Consensus 186 v 186 (203)
+
T Consensus 190 I 190 (245)
T 2nly_A 190 I 190 (245)
T ss_dssp E
T ss_pred E
Confidence 4
No 162
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=24.72 E-value=2e+02 Score=24.26 Aligned_cols=84 Identities=8% Similarity=-0.064 Sum_probs=49.7
Q ss_pred ceEecccc-chhccCchHHHHHHHHHHhcCCe--EEecCC---CCCCHHHHH-------hhcCC--ceeEEEeeeCCHHH
Q 028827 104 PIIIAPTA-LHKLANPEGEVATARAAASCNTI--MVLSFT---SSSSIEEVA-------ASCNA--VRFYQLYVFKKRDI 168 (203)
Q Consensus 104 Pi~iaP~g-~~~l~hp~gE~a~AraA~~~gi~--~~lss~---ss~sleeia-------~~~~~--~~w~Qly~~~d~~~ 168 (203)
|-++.|+- -.+-.+.++-..+++--.+.|+- +++||- .+.+.||-. ++..+ +.+..+- ..+-..
T Consensus 16 ~a~vTPf~~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~ 94 (318)
T 3qfe_A 16 CPAVTFFDSKTDTLDLASQERYYAYLARSGLTGLVILGTNAEAFLLTREERAQLIATARKAVGPDFPIMAGVG-AHSTRQ 94 (318)
T ss_dssp EECCCCEETTTTEECHHHHHHHHHHHHTTTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHCTTSCEEEECC-CSSHHH
T ss_pred EeeeCCccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCC-CCCHHH
Confidence 44555654 33334556667777777777774 444442 334555432 22222 3333331 236777
Q ss_pred HHHHHHHHHHcCCcEEEEee
Q 028827 169 AATLVQRAERNGFKALVLTA 188 (203)
Q Consensus 169 ~~~ll~rAe~aG~~AlvvTV 188 (203)
+.++.++|+++|++++++..
T Consensus 95 ai~la~~a~~~Gadavlv~~ 114 (318)
T 3qfe_A 95 VLEHINDASVAGANYVLVLP 114 (318)
T ss_dssp HHHHHHHHHHHTCSEEEECC
T ss_pred HHHHHHHHHHcCCCEEEEeC
Confidence 88899999999999988853
No 163
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=24.71 E-value=1.8e+02 Score=22.79 Aligned_cols=42 Identities=14% Similarity=-0.032 Sum_probs=27.4
Q ss_pred HHHHhhcCCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 028827 146 EEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 146 eeia~~~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
.+..+..+.....+..++.|.+.+.+.|+++.+.+++.|+.|
T Consensus 55 ~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVItt 96 (185)
T 3rfq_A 55 TELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSV 96 (185)
T ss_dssp HHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEC
Confidence 333333342223345678889999999999876788766655
No 164
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=24.70 E-value=2.4e+02 Score=23.28 Aligned_cols=65 Identities=8% Similarity=0.074 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhcCCeEEecCCCCCCHHHHHhhcCCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecC
Q 028827 120 GEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADT 190 (203)
Q Consensus 120 gE~a~AraA~~~gi~~~lss~ss~sleeia~~~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~ 190 (203)
.-.+++..+.+.++|++..+.++..+.+ ....+|++. +.|......+++-++..|.+-+++-.|.
T Consensus 83 ~~~a~~~~~~~~~ip~is~~~~~~~l~~-----~~~~~~r~~-~~~~~~~~~~~~~~~~~g~~~v~ii~d~ 147 (395)
T 3h6g_A 83 SANAVQSICNALGVPHIQTRWKHQVSDN-----KDSFYVSLY-PDFSSLSRAILDLVQFFKWKTVTVVYDD 147 (395)
T ss_dssp HHHHHHHHHHHTTCCEEECSCCCCCTTC-----CCCSEEEEE-ECHHHHHHHHHHHHHHTTCSEEEEEESS
T ss_pred HHHHHHHHHhcCCCCeEeeccCcccccc-----cCceEEEec-CCHHHHHHHHHHHHHHCCCeEEEEEEEC
Confidence 3467889999999999875444433321 234466664 4445566666666667787766665554
No 165
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=24.22 E-value=1.5e+02 Score=21.98 Aligned_cols=37 Identities=8% Similarity=-0.006 Sum_probs=27.8
Q ss_pred CCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeec
Q 028827 153 NAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTAD 189 (203)
Q Consensus 153 ~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD 189 (203)
++...+=+-..+.-..+.+.++.|++.|++.|++|=.
T Consensus 96 ~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~ 132 (183)
T 2xhz_A 96 PQDVVIAISNSGESSEITALIPVLKRLHVPLICITGR 132 (183)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHTTTCCEEEEESC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEECC
Confidence 3434444555666677888999999999999999864
No 166
>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}
Probab=24.21 E-value=69 Score=27.51 Aligned_cols=39 Identities=8% Similarity=-0.001 Sum_probs=25.1
Q ss_pred cchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHH
Q 028827 111 ALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVA 149 (203)
Q Consensus 111 g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia 149 (203)
+++++.-.+|=..+.+.+++.|++++..-+...+++.+.
T Consensus 91 sf~Glg~~~GL~~L~~~~~e~GLpv~Tev~D~~~v~~l~ 129 (298)
T 3fs2_A 91 AARGIGLEKALEVFSDLKKEYGFPVLTDIHTEEQCAAVA 129 (298)
T ss_dssp ----CCHHHHHHHHHHHHHHHCCCEEEECCSHHHHHHHT
T ss_pred CcCCcCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHH
Confidence 344442136767889999999999998777655555543
No 167
>4fnq_A Alpha-galactosidase AGAB; glycoside hydrolase, hydrolase; 1.80A {Geobacillus stearothermophilus} PDB: 4fnr_A 4fnu_A* 4fnt_A* 4fns_A* 4fnp_A*
Probab=24.19 E-value=27 Score=33.39 Aligned_cols=41 Identities=20% Similarity=0.358 Sum_probs=31.6
Q ss_pred eEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhh
Q 028827 157 FYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREAD 199 (203)
Q Consensus 157 w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p~~g~Re~d 199 (203)
|.-.|..-|.+.+.+++++|+++|+.-++| |....|.|..|
T Consensus 336 W~a~~~d~~e~~i~~~ad~aa~lG~e~fvi--DDGWf~~r~~d 376 (729)
T 4fnq_A 336 WEATYFDFNEEKLVNIAKTEAELGIELFVL--DDGWFGKRDDD 376 (729)
T ss_dssp STTTTTCCCHHHHHHHHHHHHHHTCCEEEE--CSCCBTTCCST
T ss_pred cccccccCCHHHHHHHHHHHHhcCccEEEE--cceeecCCCCC
Confidence 444555668999999999999999997665 67777766554
No 168
>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A*
Probab=23.98 E-value=1.8e+02 Score=23.93 Aligned_cols=25 Identities=16% Similarity=-0.122 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHhCChhhhhhhcCCc
Q 028827 36 VNLNEFQELARLALPKMYYDFYAGGA 61 (203)
Q Consensus 36 ~~~~d~~~~Ar~~Lp~~~~~Y~~gGa 61 (203)
.+.++..+.|++.+... -++|+=|.
T Consensus 22 ~~~~~a~~~a~~~v~~G-AdiIDIg~ 46 (262)
T 1f6y_A 22 RDPAPVQEWARRQEEGG-ARALDLNV 46 (262)
T ss_dssp TCHHHHHHHHHHHHHHT-CSEEEEBC
T ss_pred CCHHHHHHHHHHHHHCC-CcEEEECC
Confidence 46788888998888555 47776443
No 169
>2g0w_A LMO2234 protein; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.70A {Listeria monocytogenes} SCOP: c.1.15.4
Probab=23.76 E-value=1.8e+02 Score=23.40 Aligned_cols=20 Identities=20% Similarity=0.081 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHcCCcEEEE
Q 028827 167 DIAATLVQRAERNGFKALVL 186 (203)
Q Consensus 167 ~~~~~ll~rAe~aG~~Alvv 186 (203)
+..++.++.|.+.|++.|++
T Consensus 105 ~~~~~~i~~A~~lGa~~v~~ 124 (296)
T 2g0w_A 105 KKEQTTFHMARLFGVKHINC 124 (296)
T ss_dssp HHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEE
Confidence 35678899999999999876
No 170
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=23.22 E-value=78 Score=20.97 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=14.3
Q ss_pred eeEEEeeeCCHHHHHHHHHHHHHcCCcEEEE
Q 028827 156 RFYQLYVFKKRDIAATLVQRAERNGFKALVL 186 (203)
Q Consensus 156 ~w~Qly~~~d~~~~~~ll~rAe~aG~~Alvv 186 (203)
.++|+=-+++++..+.+.++....|+.+.+.
T Consensus 10 ~~vQvGaF~~~~~A~~l~~~L~~~G~~a~i~ 40 (81)
T 1uta_A 10 WMVQCGSFRGAEQAETVRAQLAFEGFDSKIT 40 (81)
T ss_dssp CCCBCCEESCHHHHHHHHHHHHHHTCCEEEE
T ss_pred EEEEEEEcCCHHHHHHHHHHHHhCCCCeEEE
Confidence 3444444444444444444444444444433
No 171
>1yy3_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase; beta-barrel, QUEA, quein queuosine, tRNA- modification; 2.88A {Bacillus subtilis}
Probab=23.15 E-value=70 Score=28.15 Aligned_cols=109 Identities=19% Similarity=0.224 Sum_probs=49.1
Q ss_pred HHHHHHHhhccccccccccCCCCCCcceeecCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeE-------EecC
Q 028827 67 LKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIM-------VLSF 139 (203)
Q Consensus 67 ~~~N~~af~~i~L~pRvL~dv~~~dtst~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~-------~lss 139 (203)
+.+-.+.+-++-|-|-+=+..++.+-=-|+|-++--+ .-|||++- |-.-| +-+.-++.|+-+ .+||
T Consensus 142 ~~~~L~~~G~~PLPPYI~r~~~D~erYQTVyAk~~Gs--vAAPTAGL---HFt~e--Ll~~L~~kGv~~a~vTLHVG~GT 214 (346)
T 1yy3_A 142 FYEVLESLGEMPLPPYIKEQLDDKERYQTVYSKEIGS--AAAPTAGL---HFTEE--ILQQLKDKGVQIEFITLHVGLGT 214 (346)
T ss_dssp HHHHHHHHHTCCCCHHHHTTSSSCC--------------CCCCSSTT---CCCHH--HHHHHHHHTEEEEECEEESGGGG
T ss_pred HHHHHHHCCCCCCCcccCCCCCChhhchhhhcCCCCh--hhcCCCCC---CCCHH--HHHHHHHCCCeEEEEEEeecCCC
Confidence 4444555555555443323323333334555544322 45678764 33333 222333344432 2345
Q ss_pred CCCCCHHHHHhhcCCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 028827 140 TSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 140 ~ss~sleeia~~~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
+-.-..|+|.++-...-||++ .+.+.+.|.+|++.|-+.|.|.
T Consensus 215 F~PV~~e~i~~H~MHsE~~~V-----~~~ta~~in~aka~G~RViAVG 257 (346)
T 1yy3_A 215 FRPVSADEVEEHNMHAEFYQM-----SEETAAALNKVRENGGRIISVG 257 (346)
T ss_dssp GC-----------CCCEEEEE-----CHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCCccccccccCCcccEEEEE-----CHHHHHHHHHHHHcCCeEEEEe
Confidence 655566888888766678877 5678889999999998887774
No 172
>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria}
Probab=22.98 E-value=1.1e+02 Score=24.66 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHcCCcEEEEee
Q 028827 168 IAATLVQRAERNGFKALVLTA 188 (203)
Q Consensus 168 ~~~~ll~rAe~aG~~AlvvTV 188 (203)
.+.++++++.++|.+..+.||
T Consensus 200 ~~~~~v~~~~~~G~~v~~wTv 220 (258)
T 2o55_A 200 LTKEQVCTAHEKGLSVTVWMP 220 (258)
T ss_dssp CCHHHHHHHHHTTCEEEEECC
T ss_pred cCHHHHHHHHHCCCEEEEeeC
Confidence 346789999999999999999
No 173
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=22.86 E-value=2.5e+02 Score=21.30 Aligned_cols=31 Identities=13% Similarity=0.060 Sum_probs=23.2
Q ss_pred eEEEeeeCCHHHHHHHHHHHHHc-CCcEEEEe
Q 028827 157 FYQLYVFKKRDIAATLVQRAERN-GFKALVLT 187 (203)
Q Consensus 157 w~Qly~~~d~~~~~~ll~rAe~a-G~~AlvvT 187 (203)
..+..++.|.+.+.+.|++|.+. +++.|+.|
T Consensus 45 ~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVitt 76 (172)
T 1mkz_A 45 VDKAIVKENRYAIRAQVSAWIASDDVQVVLIT 76 (172)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHSSSCCEEEEE
T ss_pred eEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeC
Confidence 34566788899999999999886 68755444
No 174
>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1
Probab=22.81 E-value=1e+02 Score=27.65 Aligned_cols=33 Identities=6% Similarity=0.123 Sum_probs=25.8
Q ss_pred eeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEee
Q 028827 156 RFYQLYVFKKRDIAATLVQRAERNGFKALVLTA 188 (203)
Q Consensus 156 ~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTV 188 (203)
.++-+-+..+.+.+.++.+.++++|+++|+++-
T Consensus 300 V~vKispd~~~ed~~~iA~~~~~aGaDgI~v~n 332 (443)
T 1tv5_A 300 VFVKLAPDLNQEQKKEIADVLLETNIDGMIISN 332 (443)
T ss_dssp EEEEECSCCCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 466555545566788899999999999999875
No 175
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=22.06 E-value=1.5e+02 Score=23.20 Aligned_cols=36 Identities=22% Similarity=0.170 Sum_probs=27.0
Q ss_pred CCceeEEEeeeCCHHHHHHHHHHHHH--cCCcEEEEee
Q 028827 153 NAVRFYQLYVFKKRDIAATLVQRAER--NGFKALVLTA 188 (203)
Q Consensus 153 ~~~~w~Qly~~~d~~~~~~ll~rAe~--aG~~AlvvTV 188 (203)
++...+=+-..+.-..+.+.++.|++ .|++.|+||=
T Consensus 106 ~~DlvI~iS~SG~t~~~i~~~~~ak~~~~Ga~vI~IT~ 143 (220)
T 3etn_A 106 ENDLLLLISNSGKTREIVELTQLAHNLNPGLKFIVITG 143 (220)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhcCCCCeEEEEEC
Confidence 44334445556666778889999999 9999999994
No 176
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=21.86 E-value=58 Score=29.97 Aligned_cols=31 Identities=23% Similarity=0.274 Sum_probs=23.1
Q ss_pred eEEEeeeCCHH----HHHHHHHHHHHcCCcEEEEe
Q 028827 157 FYQLYVFKKRD----IAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 157 w~Qly~~~d~~----~~~~ll~rAe~aG~~AlvvT 187 (203)
||+++...=++ ...+++++++++|+..|++|
T Consensus 438 ~~~v~~~Gw~~~~~~~~~e~a~~~~~~Ga~~il~t 472 (555)
T 1jvn_A 438 WYQCTIKGGRESRDLGVWELTRACEALGAGEILLN 472 (555)
T ss_dssp EEEEEETTTTEEEEEEHHHHHHHHHHTTCCEEEEC
T ss_pred eEEEEEecCccCCCCCHHHHHHHHHHcCCCEEEEe
Confidence 78887653221 24579999999999999985
No 177
>3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1, glycerophosphoryl diester phosphodiesterase, ST genomics; HET: MSE CIT GOL; 1.50A {Cytophaga hutchinsonii atcc 33406}
Probab=21.70 E-value=67 Score=26.04 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecCC
Q 028827 167 DIAATLVQRAERNGFKALVLTADTP 191 (203)
Q Consensus 167 ~~~~~ll~rAe~aG~~AlvvTVD~p 191 (203)
.+..++++++.++|.+..+.|||.+
T Consensus 223 ~~~~~~v~~~~~~Gl~v~~wTvn~~ 247 (272)
T 3ch0_A 223 LVSKKDIDAAHKLGMRVIPWTVNTK 247 (272)
T ss_dssp GCCHHHHHHHHHTTCEECCBCCCSH
T ss_pred hcCHHHHHHHHHcCCEEEEeccCCH
Confidence 3456788999999999999999864
No 178
>1h3d_A ATP-phosphoribosyltransferase; hisitidine biosynthesis, glycosyltransferase; HET: AMP TLA; 2.7A {Escherichia coli} SCOP: c.94.1.1 d.58.5.3 PDB: 1q1k_A*
Probab=21.59 E-value=94 Score=26.64 Aligned_cols=56 Identities=7% Similarity=0.137 Sum_probs=40.5
Q ss_pred CCeEEecCCCCCCHHHHHhhcC---Cc---------eeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 028827 132 NTIMVLSFTSSSSIEEVAASCN---AV---------RFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 132 gi~~~lss~ss~sleeia~~~~---~~---------~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
+-.++.=+.....+++|.+..| +| .|+-+...-+++...+++.+-+++|++.|+++
T Consensus 225 ~~~~~~~n~p~~~l~~v~~~lPg~~~PTVs~l~~~~~wvAV~~vv~~~~~~~~~~~Lk~~GA~~Ilv~ 292 (299)
T 1h3d_A 225 ESKYIMMHAPTERLDEVIALLPGAERPTILPLAGDQQRVAMHMVSSETLFWETMEKLKALGASSILVL 292 (299)
T ss_dssp HCEEEECCCCTTTHHHHHHHSCCSSCCCBCCCC-------BEEEESSCCCHHHHHHHHHTTCCSCEEE
T ss_pred ceeEEEEeCCHHHHHHHHHhcCCCCCCccccccCCCCEEEEEEEEcHHHHHHHHHHHHHcCCCeEEEe
Confidence 3456666777888999988753 12 37777776678888899999999999998875
No 179
>1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A
Probab=21.49 E-value=1.8e+02 Score=24.57 Aligned_cols=60 Identities=20% Similarity=0.206 Sum_probs=40.5
Q ss_pred chHHHHHHHHHHhcCCeEEecCCCCCCHHHHHhhcCCceeEEEeeeCCHHHHHHHHHHHHHcCCc
Q 028827 118 PEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFK 182 (203)
Q Consensus 118 p~gE~a~AraA~~~gi~~~lss~ss~sleeia~~~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~ 182 (203)
.+|-..+.+.+.+.|++++..-+...+++.+++ .+-|+|+=-..-+ +.++++.+.+.|..
T Consensus 75 ~~gl~~l~~~~~~~Glp~~te~~d~~~~~~l~~---~vd~~kIgA~~~~--n~~Ll~~~a~~~kP 134 (292)
T 1o60_A 75 EEGLKIFQELKDTFGVKIITDVHEIYQCQPVAD---VVDIIQLPAFLAR--QTDLVEAMAKTGAV 134 (292)
T ss_dssp HHHHHHHHHHHHHHCCEEEEECCSGGGHHHHHT---TCSEEEECGGGTT--CHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHcCCcEEEecCCHHHHHHHHh---cCCEEEECccccc--CHHHHHHHHcCCCc
Confidence 467778899999999999999888888888875 2567776321111 12355555555543
No 180
>3mcm_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate...; folate, TIM barrel, synthase, HPPK, DHPS; 2.20A {Francisella tularensis subsp} PDB: 3mcn_A* 3mco_A*
Probab=21.47 E-value=1.4e+02 Score=26.99 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHcCC--cEEEEe
Q 028827 166 RDIAATLVQRAERNGF--KALVLT 187 (203)
Q Consensus 166 ~~~~~~ll~rAe~aG~--~AlvvT 187 (203)
.+...+.+++|+++|. .-|+++
T Consensus 343 ~~~l~~~i~~a~~aGI~~~~IilD 366 (442)
T 3mcm_A 343 CDYIEQKKQILLKHGIAQQNIYFD 366 (442)
T ss_dssp HHHHHHHHHHHHHHTCCGGGEEEE
T ss_pred HHHHHHHHHHHHHcCCCHHHEEEe
Confidence 4667789999999999 567775
No 181
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=21.27 E-value=2.6e+02 Score=21.51 Aligned_cols=36 Identities=8% Similarity=-0.083 Sum_probs=24.4
Q ss_pred EEeeeCCHHHHHHHHHHHHHc-CCcEEEEeecCCCCCC
Q 028827 159 QLYVFKKRDIAATLVQRAERN-GFKALVLTADTPRLGR 195 (203)
Q Consensus 159 Qly~~~d~~~~~~ll~rAe~a-G~~AlvvTVD~p~~g~ 195 (203)
+..++.|.+.+.+.|++|.+. |++.|+.| =....|.
T Consensus 59 ~~iv~Dd~~~I~~al~~a~~~~~~DlVitt-GG~s~g~ 95 (178)
T 2pjk_A 59 YSLVPDDKIKILKAFTDALSIDEVDVIIST-GGTGYSP 95 (178)
T ss_dssp EEEECSCHHHHHHHHHHHHTCTTCCEEEEE-SCCSSST
T ss_pred EEEeCCCHHHHHHHHHHHHhcCCCCEEEEC-CCCCCCC
Confidence 445788899999999988775 68765544 3333333
No 182
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=21.26 E-value=98 Score=25.78 Aligned_cols=60 Identities=13% Similarity=0.212 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCCeEEecCCCCCCHHHHHhhcC--C-ceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 028827 121 EVATARAAASCNTIMVLSFTSSSSIEEVAASCN--A-VRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 121 E~a~AraA~~~gi~~~lss~ss~sleeia~~~~--~-~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
....|+++..-++..+.+......++++.+.+. + ..|.-+ .+ .+.+++|.++|++-|++|
T Consensus 127 qv~~A~~~GAD~VlLi~a~l~~~~l~~l~~~a~~lGl~~lvev---~t----~ee~~~A~~~Gad~IGv~ 189 (272)
T 3qja_A 127 QIHEARAHGADMLLLIVAALEQSVLVSMLDRTESLGMTALVEV---HT----EQEADRALKAGAKVIGVN 189 (272)
T ss_dssp HHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHHHTTCEEEEEE---SS----HHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHcCCCEEEEecccCCHHHHHHHHHHHHHCCCcEEEEc---CC----HHHHHHHHHCCCCEEEEC
Confidence 456667777777777667666445555554431 3 334333 22 244678888999999998
No 183
>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8
Probab=21.07 E-value=3.4e+02 Score=22.64 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=18.3
Q ss_pred CCHHHHHHHHHHHHH---cCCcEEEEee
Q 028827 164 KKRDIAATLVQRAER---NGFKALVLTA 188 (203)
Q Consensus 164 ~d~~~~~~ll~rAe~---aG~~AlvvTV 188 (203)
++.+..+++|+||++ ||+.+|++--
T Consensus 155 rt~~~a~~~i~rA~a~~eAGA~~ivlE~ 182 (264)
T 1m3u_A 155 RGDEAGDQLLSDALALEAAGAQLLVLEC 182 (264)
T ss_dssp CSHHHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCHHHHHHHHHHHHHHHHCCCcEEEEec
Confidence 455556777877765 8999999853
No 184
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=20.78 E-value=67 Score=26.95 Aligned_cols=12 Identities=33% Similarity=0.299 Sum_probs=6.9
Q ss_pred HHHHHHHHhcCC
Q 028827 122 VATARAAASCNT 133 (203)
Q Consensus 122 ~a~AraA~~~gi 133 (203)
.++|++|++.|+
T Consensus 177 ~avAka~a~~g~ 188 (249)
T 3m0z_A 177 EAVAKACAAHDF 188 (249)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCc
Confidence 555555555555
No 185
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1
Probab=20.75 E-value=1.2e+02 Score=24.15 Aligned_cols=37 Identities=8% Similarity=0.070 Sum_probs=24.7
Q ss_pred HHHhhcCCceeEEEe---eeCCHHHHHHHHHHHHHcCCcEE
Q 028827 147 EVAASCNAVRFYQLY---VFKKRDIAATLVQRAERNGFKAL 184 (203)
Q Consensus 147 eia~~~~~~~w~Qly---~~~d~~~~~~ll~rAe~aG~~Al 184 (203)
+|.++.+ +.+.-+. ...+.+...++.+.++++|+++|
T Consensus 110 ~v~~a~~-pv~vKvi~e~~~l~~~~~~~~a~~a~eaGad~I 149 (225)
T 1mzh_A 110 EIFRETP-SAVHKVIVETPYLNEEEIKKAVEICIEAGADFI 149 (225)
T ss_dssp HHHHTCT-TSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHhc-CceEEEEEeCCCCCHHHHHHHHHHHHHhCCCEE
Confidence 3344444 4555552 22356678889999999999998
No 186
>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ...
Probab=20.65 E-value=1.7e+02 Score=24.47 Aligned_cols=40 Identities=18% Similarity=0.115 Sum_probs=32.2
Q ss_pred chHHHHHHHHHHhcCCeEEecCCCCCCHHHHHhhcCCceeEEE
Q 028827 118 PEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQL 160 (203)
Q Consensus 118 p~gE~a~AraA~~~gi~~~lss~ss~sleeia~~~~~~~w~Ql 160 (203)
.+|-..+.+.+.+.|++++..-+...+++.+++. .-|+|+
T Consensus 61 ~~GL~~l~~~~~e~Glp~~te~~d~~~~~~l~~~---vd~~~I 100 (267)
T 2nwr_A 61 EYGVKALRKVKEEFGLKITTDIHESWQAEPVAEV---ADIIQI 100 (267)
T ss_dssp HHHHHHHHHHHHHHCCEEEEECSSGGGHHHHHTT---CSEEEE
T ss_pred HHHHHHHHHHHHhcCCeEEEecCCHHhHHHHHhc---CCEEEE
Confidence 4677778899999999999988888888888762 456776
No 187
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=20.56 E-value=75 Score=26.98 Aligned_cols=12 Identities=33% Similarity=0.174 Sum_probs=6.7
Q ss_pred HHHHHHHHhcCC
Q 028827 122 VATARAAASCNT 133 (203)
Q Consensus 122 ~a~AraA~~~gi 133 (203)
.++|++|++.|+
T Consensus 200 ~avAkAca~~g~ 211 (275)
T 3m6y_A 200 RAVAKACAEEGF 211 (275)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHcCc
Confidence 455555555555
No 188
>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}
Probab=20.37 E-value=1.7e+02 Score=25.16 Aligned_cols=22 Identities=14% Similarity=0.265 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHcCCc--EEEEee
Q 028827 167 DIAATLVQRAERNGFK--ALVLTA 188 (203)
Q Consensus 167 ~~~~~ll~rAe~aG~~--AlvvTV 188 (203)
+...+.+++|+++|++ -|+++-
T Consensus 195 ~~l~~~i~~a~~aGI~~~~IilDP 218 (318)
T 2vp8_A 195 SQVTAAAERAVAAGVAREKVLIDP 218 (318)
T ss_dssp HHHHHHHHHHHHTTCCGGGEEEET
T ss_pred HHHHHHHHHHHHcCCChhhEEEcC
Confidence 5566779999999997 688764
No 189
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1
Probab=20.21 E-value=1.2e+02 Score=25.44 Aligned_cols=18 Identities=6% Similarity=0.196 Sum_probs=16.2
Q ss_pred HHHHHHHHHcCCcEEEEe
Q 028827 170 ATLVQRAERNGFKALVLT 187 (203)
Q Consensus 170 ~~ll~rAe~aG~~AlvvT 187 (203)
.+++++++++|+++|.|+
T Consensus 143 ~~~a~~l~~~G~d~i~v~ 160 (318)
T 1vhn_A 143 EEIYRILVEEGVDEVFIH 160 (318)
T ss_dssp HHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHhCCCEEEEc
Confidence 389999999999999996
No 190
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=20.16 E-value=3.7e+02 Score=22.20 Aligned_cols=75 Identities=16% Similarity=0.082 Sum_probs=47.2
Q ss_pred chhccCchHHHHHHHHHHhcCCeEEecCC-CC---CCHHHHHhhcCCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 028827 112 LHKLANPEGEVATARAAASCNTIMVLSFT-SS---SSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 112 ~~~l~hp~gE~a~AraA~~~gi~~~lss~-ss---~sleeia~~~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
..++-+|..--++.|.|..+|+--++=+- .+ .+-.-+..+.+...|..++.. |.. +.++..++.|+.-++.+
T Consensus 124 Ld~v~dP~NlGaI~Rta~a~G~~~vil~~~~~~~~~~~~v~ras~Ga~~~l~i~~~-~l~---~~l~~lk~~g~~v~~~~ 199 (277)
T 3nk6_A 124 LDGVKIVGNIGAIVRTSLALGAAGIVLVDSDLATIADRRLLRASRGYVFSLPVVLA-DRE---EAVSFLRDNDIALMVLD 199 (277)
T ss_dssp EESCCCHHHHHHHHHHHHHTTCSEEEEESCCCSCTTCHHHHHHTTTCTTTSCEEEC-CHH---HHHHHHHHTTCCEEEEC
T ss_pred EEcCCCcchHHHHHHHHHHcCCCEEEEcCCCCcCCCCHHHHHHhCChhhcCeEEEE-CHH---HHHHHHHhcCCeEEEEe
Confidence 34555665556899999999987555322 22 233334444466667777665 544 45566668899988888
Q ss_pred ecC
Q 028827 188 ADT 190 (203)
Q Consensus 188 VD~ 190 (203)
.+.
T Consensus 200 ~~~ 202 (277)
T 3nk6_A 200 TDG 202 (277)
T ss_dssp TTC
T ss_pred cCC
Confidence 764
Done!