BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028828
(203 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GQV|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 From
Arabidopsis Thaliana
Length = 166
Score = 165 bits (417), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/103 (78%), Positives = 88/103 (85%), Gaps = 3/103 (2%)
Query: 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
SGVYTVG+FMT KE+LHVVKPTTTVDEALE+LVE RITGFPVID+DWKLVGLVSDYDLLA
Sbjct: 2 SGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLA 61
Query: 140 LDSISGSGRADNSMFPEVDSTWKV---CEKCLSFENYICLGSL 179
LDSISGSGR +NSMFPEVDSTWK +K LS N +G L
Sbjct: 62 LDSISGSGRTENSMFPEVDSTWKTFNAVQKLLSKTNGKLVGDL 104
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVS 133
VGD MT VV+ T +++A +IL+E + PV+D D KLVG+++
Sbjct: 101 VGDLMTPAP--LVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIIT 147
>pdb|3SL7|A Chain A, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From
Arabidopsis Thaliana
pdb|3SL7|B Chain B, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From
Arabidopsis Thaliana
Length = 180
Score = 129 bits (324), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 57/80 (71%), Positives = 71/80 (88%)
Query: 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142
YTVGDF T ++ LHVVKP+T+VD+ALE+LVEK++TG PVIDD+W LVG+VSDYDLLALDS
Sbjct: 4 YTVGDFXTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDS 63
Query: 143 ISGSGRADNSMFPEVDSTWK 162
ISG + D ++FP+VDSTWK
Sbjct: 64 ISGRSQNDTNLFPDVDSTWK 83
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 10/83 (12%)
Query: 85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL--AL-- 140
VGD T VV+ +T +++A +L+E + PV+D D KL+G+++ +++ AL
Sbjct: 100 VGDLXTPSP--LVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQI 157
Query: 141 ----DSISGSGRADNSMFPEVDS 159
DSISG + D ++FP+VDS
Sbjct: 158 KRNADSISGRSQNDTNLFPDVDS 180
>pdb|4GQW|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 (loop
Deletion) From Arabidopsis Thaliana
Length = 152
Score = 125 bits (315), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/104 (65%), Positives = 74/104 (71%), Gaps = 17/104 (16%)
Query: 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
SGVYTVG+FMT KE+LHVVKPTTTVDEALE+LVE RITGFPVID+DWKLVGLVSDYDLL
Sbjct: 1 GSGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLL 60
Query: 139 ALDSISGSGRADNSMFPEVDSTWKV---CEKCLSFENYICLGSL 179
ALDS DSTWK +K LS N +G L
Sbjct: 61 ALDS--------------GDSTWKTFNAVQKLLSKTNGKLVGDL 90
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVS 133
VGD MT VV+ T +++A +IL+E + PV+D D KLVG+++
Sbjct: 87 VGDLMTPAP--LVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIIT 133
>pdb|2CU0|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
pdb|2CU0|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
Length = 486
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 69 GTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL 128
G +T A G V + MT +E+ V + V+EAL+I++E RI PV+D+ KL
Sbjct: 137 GIITKKDIAAREG-KLVKELMT--KEVITVPESIEVEEALKIMIENRIDRLPVVDERGKL 193
Query: 129 VGLVSDYDLLALDSISGSGRADNS 152
VGL++ DL+A + R +N
Sbjct: 194 VGLITMSDLVARKKYKNAVRDENG 217
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 93 EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142
E++ + P TVD AL ++ + I G PV++D+ K+VG+++ D+ A +
Sbjct: 101 EDVITIAPDETVDFALFLMEKHGIDGLPVVEDE-KVVGIITKKDIAAREG 149
>pdb|1VRD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
pdb|1VRD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
Length = 494
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 37/56 (66%)
Query: 85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
+ D MT +E+L V P ++++A EIL + RI P++ D KLVGL++ D++++
Sbjct: 157 IKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSV 212
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 30/40 (75%)
Query: 98 VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
V P TV EA++++ E +I G PV+D++ +LVGL+++ D+
Sbjct: 108 VTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDV 147
>pdb|1ME8|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Rvp Bound
pdb|1ME9|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Imp Bound
pdb|1MEH|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Imp And Moa Bound
Length = 503
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV--SDYD 136
V D MT +L T + EA +I+ EK++ P+IDDD L +V DYD
Sbjct: 163 VSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYD 216
>pdb|1ME7|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Rvp And Moa Bound
pdb|1MEI|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Xmp And Mycophenolic Acid
Bound
pdb|1MEW|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Xmp And Nad Bound
pdb|1AK5|A Chain A, Inosine Monophosphate Dehydrogenase (impdh) From
Tritrichomonas Foetus
Length = 503
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV--SDYD 136
V D MT +L T + EA +I+ EK++ P+IDDD L +V DYD
Sbjct: 163 VSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYD 216
>pdb|3KH5|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk.
pdb|3LFZ|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk
Length = 280
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA--LDSISGSGRA 149
+E + +K +DEA+E + K + G P+++D+ +L+ L+++ D++ LD I +
Sbjct: 91 EENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDKIDENEVI 150
Query: 150 DNSMFPEV 157
D+ + +V
Sbjct: 151 DDYITRDV 158
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 21/30 (70%)
Query: 109 EILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
EI+V I PV+D++ ++ G++++ D+L
Sbjct: 247 EIMVTNDIGALPVVDENLRIKGIITEKDVL 276
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 98 VKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLL 138
V PTTT+ +AL + E + PV++ + K+VG+++ D++
Sbjct: 17 VYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIV 58
>pdb|4FRY|A Chain A, The Structure Of A Putative Signal-Transduction Protein
With Cbs Domains From Burkholderia Ambifaria Mc40-6
pdb|4FRY|B Chain B, The Structure Of A Putative Signal-Transduction Protein
With Cbs Domains From Burkholderia Ambifaria Mc40-6
Length = 157
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
SS V + MT K + V+P+ + DE + ++ E R+ PV+ D KL+GL+S DL+
Sbjct: 74 SSKATRVEEIMTAK--VRYVEPSQSTDECMALMTEHRMRHLPVL-DGGKLIGLISIGDLV 130
>pdb|2V8Q|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Amp
pdb|2V92|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Atp-Amp
pdb|2V9J|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Mg.Atp-Amp
pdb|2Y8L|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With Two Adp
pdb|2Y8Q|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With One Adp
pdb|2Y94|E Chain E, Structure Of An Active Form Of Mammalian Ampk
pdb|2YA3|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With Coumarin Adp
pdb|4EAG|C Chain C, Co-Crystal Structure Of An Chimeric Ampk Core With Atp
pdb|4EAI|C Chain C, Co-Crystal Structure Of An Ampk Core With Amp
pdb|4EAJ|C Chain C, Co-Crystal Of Ampk Core With Amp Soaked With Atp
pdb|4EAK|C Chain C, Co-Crystal Structure Of An Ampk Core With Atp
pdb|4EAL|C Chain C, Co-Crystal Of Ampk Core With Atp Soaked With Amp
Length = 330
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 29/44 (65%)
Query: 97 VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
+V+ TT V AL I V+ R++ PV+D+ ++V + S +D++ L
Sbjct: 205 MVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINL 248
>pdb|2NYC|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
Length = 144
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 85 VGDF-MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
+GD + T++ + + TT V + +++L + R++ P+ID++ L+ + YD+L L
Sbjct: 10 IGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGL 66
>pdb|3T4N|C Chain C, Structure Of The Regulatory Fragment Of Saccharomyces
Cerevisiae Ampk In Complex With Adp
pdb|3TDH|C Chain C, Structure Of The Regulatory Fragment Of Sccharomyces
Cerevisiae Ampk In Complex With Amp
pdb|3TE5|C Chain C, Structure Of The Regulatory Fragment Of Sacchromyces
Cerevisiae Ampk In Complex With Nadh
Length = 323
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 85 VGDF-MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
+GD + T++ + + TT V + +++L + R++ P+ID++ L+ + YD+L L
Sbjct: 189 IGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGL 245
>pdb|2QLV|C Chain C, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
pdb|2QLV|F Chain F, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
Length = 315
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 85 VGDF-MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
+GD + T++ + + TT V + +++L + R++ P+ID++ L+ + YD+L L
Sbjct: 182 IGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGL 238
>pdb|2UV7|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
Length = 152
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 9/63 (14%)
Query: 87 DFMTTK-EELHV--------VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
+FM+ EEL + V+ TT V AL I V+ R++ PV+D+ ++V + S +D+
Sbjct: 14 EFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDV 73
Query: 138 LAL 140
+ L
Sbjct: 74 INL 76
>pdb|2UV4|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
pdb|2UV5|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
Length = 152
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 29/44 (65%)
Query: 97 VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
+V+ TT V AL I V+ R++ PV+D+ ++V + S +D++ L
Sbjct: 33 MVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINL 76
>pdb|1B3O|A Chain A, Ternary Complex Of Human Type-Ii Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp And Selenazole Adenine
Dinucleotide
pdb|1B3O|B Chain B, Ternary Complex Of Human Type-Ii Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp And Selenazole Adenine
Dinucleotide
pdb|1NF7|A Chain A, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With Ribavirin Monophosphate And C2-
Mycophenolic Adenine Dinucleotide
pdb|1NF7|B Chain B, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With Ribavirin Monophosphate And C2-
Mycophenolic Adenine Dinucleotide
pdb|1NFB|A Chain A, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With 6cl-Imp And Nad
pdb|1NFB|B Chain B, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With 6cl-Imp And Nad
Length = 514
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
+ MT +E+L V T+ EA EIL + P++++D +LV +++ DL
Sbjct: 177 EIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNEDDELVAIIARTDL 227
>pdb|2UV6|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
Length = 152
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 9/63 (14%)
Query: 87 DFMTTK-EELHV--------VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
+FM+ EEL + V+ TT V AL I V+ R++ PV+D+ ++V + S +D+
Sbjct: 14 EFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDV 73
Query: 138 LAL 140
+ L
Sbjct: 74 INL 76
>pdb|2EMQ|A Chain A, Hypothetical Conserved Protein (gk1048) From Geobacillus
Kaustophilus
pdb|2EMQ|B Chain B, Hypothetical Conserved Protein (gk1048) From Geobacillus
Kaustophilus
Length = 157
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
TV F+ +++ V+P +D AL +L + + PV+D +KL GL+S + +D+I
Sbjct: 12 TVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLIS--MTMMMDAI 69
Query: 144 SGSGRAD 150
G R +
Sbjct: 70 LGLERIE 76
>pdb|3KPC|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine
Length = 124
Score = 34.3 bits (77), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
EA +IL++ I P++D+ KLVG+++ +D+
Sbjct: 24 EAAKILIKHNINHLPIVDEHGKLVGIITSWDI 55
Score = 26.6 bits (57), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 116 ITGFPVIDDDWKLVGLVSDYDL 137
I+G PV+DD ++VG+V+ D+
Sbjct: 95 ISGVPVVDDYRRVVGIVTSEDI 116
>pdb|3KPB|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|C Chain C, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|B Chain B, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|D Chain D, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|B Chain B, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|C Chain C, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|D Chain D, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine
Length = 122
Score = 34.3 bits (77), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
EA +IL++ I P++D+ KLVG+++ +D+
Sbjct: 22 EAAKILIKHNINHLPIVDEHGKLVGIITSWDI 53
Score = 26.6 bits (57), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 116 ITGFPVIDDDWKLVGLVSDYDL 137
I+G PV+DD ++VG+V+ D+
Sbjct: 93 ISGVPVVDDYRRVVGIVTSEDI 114
>pdb|2O16|A Chain A, Crystal Structure Of A Putative Acetoin Utilization
Protein (Acub) From Vibrio Cholerae
pdb|2O16|B Chain B, Crystal Structure Of A Putative Acetoin Utilization
Protein (Acub) From Vibrio Cholerae
Length = 160
Score = 34.3 bits (77), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD--S 142
V D MT H + T T+++A ++ I P++D + KL+G+VS DLLA S
Sbjct: 7 VEDMMTRHP--HTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESS 64
Query: 143 ISGSGRADNSMF 154
+ S + D+ F
Sbjct: 65 LQRSAQGDSLAF 76
>pdb|1YAV|A Chain A, Crystal Structure Of Cbs Domain-Containing Protein Ykul
From Bacillus Subtilis
pdb|1YAV|B Chain B, Crystal Structure Of Cbs Domain-Containing Protein Ykul
From Bacillus Subtilis
Length = 159
Score = 34.3 bits (77), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
TVG FM +++ V+ ++ AL +L + T PV+D ++L GL+ + ++SI
Sbjct: 15 TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTN--MIMNSI 72
Query: 144 SGSGRADNSMFPEVDS 159
G R + F ++D
Sbjct: 73 FGLERIE---FEKLDQ 85
>pdb|3LQN|A Chain A, Crystal Structure Of Cbs Domain-Containing Protein Of
Unknown Function From Bacillus Anthracis Str. Ames
Ancestor
Length = 150
Score = 33.9 bits (76), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS 144
V D M + E++ V+ ++ AL +LV+ + PV+D +KL GL+S + LD I
Sbjct: 17 VKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTA--MILDGIL 74
Query: 145 GSGRADNSMFPEV 157
G R + E+
Sbjct: 75 GLERIEFERLEEM 87
>pdb|2NYE|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
pdb|2NYE|B Chain B, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
Length = 144
Score = 33.9 bits (76), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 85 VGDF-MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
+GD + T++ + TT V + ++ L + R++ P+ID++ L+ + YD+L L
Sbjct: 10 IGDLNIITQDNXKSCQXTTPVIDVIQXLTQGRVSSVPIIDENGYLINVYEAYDVLGL 66
>pdb|3L2B|A Chain A, Crystal Structure Of The Cbs And Drtgg Domains Of The
Regulatory Region Of Clostridium Perfringens
Pyrophosphatase Complexed With Activator, Diadenosine
Tetraphosphate
pdb|3L2B|B Chain B, Crystal Structure Of The Cbs And Drtgg Domains Of The
Regulatory Region Of Clostridium Perfringens
Pyrophosphatase Complexed With Activator, Diadenosine
Tetraphosphate
Length = 245
Score = 33.9 bits (76), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 32/53 (60%)
Query: 87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
D++ TK+ L V V++ + E R + +PVID++ K+VG ++ + L++
Sbjct: 188 DYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLIS 240
>pdb|1JR1|A Chain A, Crystal Structure Of Inosine Monophosphate Dehydrogenase
In Complex With Mycophenolic Acid
pdb|1JR1|B Chain B, Crystal Structure Of Inosine Monophosphate Dehydrogenase
In Complex With Mycophenolic Acid
Length = 514
Score = 33.5 bits (75), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
+ MT +E+L V T+ EA EIL + P+++++ +LV +++ DL
Sbjct: 177 EIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDL 227
>pdb|3L31|A Chain A, Crystal Structure Of The Cbs And Drtgg Domains Of The
Regulatory Region Of Clostridium Perfringens
Pyrophosphatase Complexed With The Inhibitor, Amp
pdb|3L31|B Chain B, Crystal Structure Of The Cbs And Drtgg Domains Of The
Regulatory Region Of Clostridium Perfringens
Pyrophosphatase Complexed With The Inhibitor, Amp
Length = 252
Score = 33.5 bits (75), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 32/53 (60%)
Query: 87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
D++ TK+ L V V++ + E R + +PVID++ K+VG ++ + L++
Sbjct: 185 DYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLIS 237
>pdb|3ZFH|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine
5'-monophosphate Dehydrogenase
Length = 510
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
P++G TV MT K++L + T ++E L E RI V+D+++ L GLV+ D+
Sbjct: 163 PNAG-DTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDI 221
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 98 VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
V P+T + E L++ E +GFPV+ + +LVG+V+ DL
Sbjct: 121 VTPSTKIIELLQMAREYGFSGFPVV-EQGELVGIVTGRDL 159
>pdb|3TSB|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSB|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
pdb|3TSD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
Length = 511
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
+ D MT KE+L TT+ EA +IL + +I P++D++ L GL++ D+
Sbjct: 177 ISDVMT-KEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDI 228
>pdb|4AVF|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|D Chain D, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
Length = 490
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
P++G TV MT K++L + T ++E L E RI V+D+++ L GLV+ D+
Sbjct: 143 PNAG-DTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDI 201
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 98 VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
V P+T + E L++ E +GFPV+ + +LVG+V+ DL
Sbjct: 101 VTPSTKIIELLQMAREYGFSGFPVV-EQGELVGIVTGRDL 139
>pdb|3USB|A Chain A, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
pdb|3USB|B Chain B, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
Length = 511
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
+ TKE+L TT+ EA +IL + +I P++D++ L GL++ D+
Sbjct: 180 VXTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDI 228
>pdb|4FXS|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae Complexed With Imp And Mycophenolic Acid
Length = 496
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 98 VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
V+P T+ + E+ GFPV+ ++ +LVG+++ D+
Sbjct: 102 VRPEQTIADVXELTHYHGFAGFPVVTENNELVGIITGRDV 141
>pdb|2YZQ|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Pyrococcus Horikoshii
Length = 282
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
V + MT ++ V P TV E + + I PVI + L+GL+ D+DLL +
Sbjct: 223 VAEIMT--RDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKV 276
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 103 TVDEALEILVEKRITGFPVIDDDWKLVGLVS 133
T + ALE+ + ++ FPV++ + KLVG++S
Sbjct: 19 TRNYALELFKKYKVRSFPVVNKEGKLVGIIS 49
>pdb|2P9M|A Chain A, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|B Chain B, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|C Chain C, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|D Chain D, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
Length = 138
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
EA E ++ +I+ PVIDD+ K++G+V+ D+
Sbjct: 29 EAFEKXLKYKISSLPVIDDENKVIGIVTTTDI 60
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 113 EKRITGFPVIDDDWKLVGLVSDYDLL 138
E+ I PV+D + KLVG++SD D++
Sbjct: 106 EEIINQLPVVDKNNKLVGIISDGDII 131
>pdb|2YZI|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Pyrococcus Horikoshii
pdb|2YZI|B Chain B, Crystal Structure Of Uncharacterized Conserved Protein
From Pyrococcus Horikoshii
Length = 138
Score = 30.0 bits (66), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 98 VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
VKP+T+V EA + E + VI+DD +VG + D++
Sbjct: 20 VKPSTSVQEASRLXXEFDVGSLVVINDDGNVVGFFTKSDII 60
>pdb|1JCN|A Chain A, Binary Complex Of Human Type-I Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp
pdb|1JCN|B Chain B, Binary Complex Of Human Type-I Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp
Length = 514
Score = 30.0 bits (66), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
+ MT + EL V T+ EA EIL + P+++D +LV +++ DL
Sbjct: 177 EVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDL 227
>pdb|1ZFJ|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh; Ec 1.1.1.205)
From Streptococcus Pyogenes
Length = 491
Score = 30.0 bits (66), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 100 PTTTVDEALEILVEKRITGFPVIDD--DWKLVGLVSDYD 136
P V EA E+ RI+G P+++ + KLVG++++ D
Sbjct: 105 PEHKVSEAEELXQRYRISGVPIVETLANRKLVGIITNRD 143
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
T E L T ++ A IL E RI P++D+ +L GL++ D+
Sbjct: 159 TSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDI 205
>pdb|3K2V|A Chain A, Structure Of The Cbs Pair Of A Putative D-Arabinose
5-Phosphate Isomerase From Klebsiella Pneumoniae Subsp.
Pneumoniae.
pdb|3K2V|B Chain B, Structure Of The Cbs Pair Of A Putative D-Arabinose
5-Phosphate Isomerase From Klebsiella Pneumoniae Subsp.
Pneumoniae
Length = 149
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
V D T +E+ V T+ +AL + K + + DDD ++G+ +D DL
Sbjct: 30 VNDIXHTGDEIPHVGLQATLRDALLEITRKNLGXTAICDDDXNIIGIFTDGDL 82
>pdb|3PC2|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila
pdb|3PC3|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Aminoacrylate
pdb|3PC4|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Serine
Length = 527
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 97 VVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLL 138
++K TV EA+ ++ + R+ PV+D DD ++G+V L+
Sbjct: 397 ILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLI 439
>pdb|3NQR|A Chain A, A Putative Cbs Domain-Containing Protein From Salmonella
Typhimurium Lt2
pdb|3NQR|B Chain B, A Putative Cbs Domain-Containing Protein From Salmonella
Typhimurium Lt2
pdb|3NQR|C Chain C, A Putative Cbs Domain-Containing Protein From Salmonella
Typhimurium Lt2
pdb|3NQR|D Chain D, A Putative Cbs Domain-Containing Protein From Salmonella
Typhimurium Lt2
Length = 127
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLV-GLVSDYDLL 138
V D + + +K T+DE L++++E + FPVI +D + G++ DLL
Sbjct: 5 VRDIXIPRSQXITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILXAKDLL 59
>pdb|4HG0|A Chain A, Crystal Structure Of Magnesium And Cobalt Efflux Protein
Corc, Northeast Structural Genomics Consortium (nesg)
Target Er40
Length = 292
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLV-GLVSDYDLL 138
V D + + +K T+DE L++++E + FPVI +D + G++ DLL
Sbjct: 69 VRDIXIPRSQXITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILXAKDLL 123
>pdb|1O50|A Chain A, Crystal Structure Of A Cbs Domain-Containing Protein
(Tm0935) From Thermotoga Maritima At 1.87 A Resolution
Length = 157
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 26/37 (70%)
Query: 102 TTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
T ++EAL+++++ I PV+D+ ++VG ++ ++L
Sbjct: 112 TPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEIL 148
>pdb|4ESY|B Chain B, Crystal Structure Of The Cbs Domain Of Cbs Domain
Containing Membrane Protein From Sphaerobacter
Thermophilus
Length = 170
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 98 VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
V+ T+D + +E +I PV+D + LVG++++ D L
Sbjct: 31 VREDDTLDAVAKTXLEHQIGXAPVVDQNGHLVGIITESDFL 71
>pdb|3DDJ|A Chain A, Crystal Structure Of A Cbs Domain-Containing Protein In
Complex With Amp (Sso3205) From Sulfolobus Solfataricus
At 1.80 A Resolution
Length = 296
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141
++ V F +TK + + +D+A+++ + + PVIDDD K+VG+V+ ++
Sbjct: 155 IFPVKVFXSTK--VQTIYKEVRLDQAVKLXLRRGFRRLPVIDDDNKVVGIVT-----VVN 207
Query: 142 SISGSGRADNSMFPE 156
+I +A + + P+
Sbjct: 208 AIKQLAKAVDKLDPD 222
>pdb|2QH1|A Chain A, Structure Of Ta289, A Cbs-Rubredoxin-Like Protein, In Its
Fe+2-Bound State
pdb|2QH1|B Chain B, Structure Of Ta289, A Cbs-Rubredoxin-Like Protein, In Its
Fe+2-Bound State
Length = 198
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 101 TTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
TTV +A++I+ E + G V DD+ VGL+S+ ++
Sbjct: 39 NTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIK 77
>pdb|4ESY|A Chain A, Crystal Structure Of The Cbs Domain Of Cbs Domain
Containing Membrane Protein From Sphaerobacter
Thermophilus
Length = 170
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 98 VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
V+ T+D + +E +I PV+D + LVG++++ D L
Sbjct: 31 VREDDTLDAVAKTXLEHQIGCAPVVDQNGHLVGIITESDFL 71
>pdb|1PVM|A Chain A, Crystal Structure Of A Conserved Cbs Domain Protein Ta0289
Of Unknown Function From Thermoplasma Acidophilum
pdb|1PVM|B Chain B, Crystal Structure Of A Conserved Cbs Domain Protein Ta0289
Of Unknown Function From Thermoplasma Acidophilum
Length = 184
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 101 TTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
TTV +A++I+ E + G V DD+ VGL+S+ ++
Sbjct: 25 NTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIK 63
>pdb|2RC3|A Chain A, Crystal Structure Of Cbs Domain, Ne2398
pdb|2RC3|B Chain B, Crystal Structure Of Cbs Domain, Ne2398
pdb|2RC3|C Chain C, Crystal Structure Of Cbs Domain, Ne2398
pdb|2RC3|D Chain D, Crystal Structure Of Cbs Domain, Ne2398
Length = 135
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 98 VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS 144
V T ++ + ++ E R+ PV+ DD K++GL+S DL+ D+IS
Sbjct: 87 VDLNNTNEDCMALITEMRVRHLPVL-DDGKVIGLLSIGDLVK-DAIS 131
>pdb|2YVX|A Chain A, Crystal Structure Of Magnesium Transporter Mgte
pdb|2YVX|B Chain B, Crystal Structure Of Magnesium Transporter Mgte
pdb|2YVX|C Chain C, Crystal Structure Of Magnesium Transporter Mgte
pdb|2YVX|D Chain D, Crystal Structure Of Magnesium Transporter Mgte
pdb|2ZY9|A Chain A, Improved Crystal Structure Of Magnesium Transporter Mgte
pdb|2ZY9|B Chain B, Improved Crystal Structure Of Magnesium Transporter Mgte
Length = 473
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 98 VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
V+ T +E ++ + T PV+D++ +LVG+V+ D+ LD + D V
Sbjct: 232 VRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDV--LDVLEAEATEDIHKLGAV 289
Query: 158 D 158
D
Sbjct: 290 D 290
>pdb|2ZXQ|A Chain A, Crystal Structure Of Endo-Alpha-N-Acetylgalactosaminidase
From Bifidobacterium Longum (Engbf)
Length = 1376
Score = 26.6 bits (57), Expect = 9.4, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 62 SSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVV 98
SSA + T+T N +SGV + GD T +E +++
Sbjct: 654 SSAAYRQRTITFNGVKVASGVVSAGDGSATGDESYLL 690
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,492,350
Number of Sequences: 62578
Number of extensions: 209891
Number of successful extensions: 764
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 675
Number of HSP's gapped (non-prelim): 92
length of query: 203
length of database: 14,973,337
effective HSP length: 94
effective length of query: 109
effective length of database: 9,091,005
effective search space: 990919545
effective search space used: 990919545
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)