BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028832
(203 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N0K|A Chain A, Proteinase Inhibitor From Coprinopsis Cinerea
Length = 150
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 48/138 (34%), Gaps = 25/138 (18%)
Query: 31 ILESVGCIWFNRSEAKDREIVARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKKGAFE 90
+ V + R A+DR ++ +++R + PE N + V A+
Sbjct: 10 VTSKVNGLHVGRPLAEDRSLLPKRIR------------VLPEDNNSGNSWVVEKDDDAYI 57
Query: 91 LGCTVCPVAIKYNKIFVDAFWNSRKQS-------------FTMHLLQLMTSWAVVCDVWY 137
L C PVA + K+F D N + FT+ W V D
Sbjct: 58 LYCKGAPVAPQEGKLFADLLGNMEDKKWIVTHQPQHGENVFTVVNASTEHGWVVPADAEE 117
Query: 138 LEPQTLRPGETAIEFAER 155
L+ +RP A + R
Sbjct: 118 LQQVEVRPLIAAPSYPPR 135
>pdb|3VWC|A Chain A, High Resolution Structure Of Proteinase Inhibitor From
Coprinopsis Cinerea
Length = 149
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 48/138 (34%), Gaps = 25/138 (18%)
Query: 31 ILESVGCIWFNRSEAKDREIVARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKKGAFE 90
+ V + R A+DR ++ +++R + PE N + V A+
Sbjct: 9 VTSKVNGLHVGRPLAEDRSLLPKRIR------------VLPEDNNSGNSWVVEKDDDAYI 56
Query: 91 LGCTVCPVAIKYNKIFVDAFWNSRKQS-------------FTMHLLQLMTSWAVVCDVWY 137
L C PVA + K+F D N + FT+ W V D
Sbjct: 57 LYCKGAPVAPQEGKLFADLLGNMEDKKWIVTHQPQHGENVFTVVNASTEHGWVVPADAEE 116
Query: 138 LEPQTLRPGETAIEFAER 155
L+ +RP A + R
Sbjct: 117 LQQVEVRPLIAAPSYPPR 134
>pdb|2K5E|A Chain A, Solution Structure Of Putative Uncharacterized Protein
Gsu1278 From Methanocaldococcus Jannaschii, Northeast
Structural Genomics Consortium (Nesg) Target Gsr195
Length = 73
Score = 30.4 bits (67), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 13 FAVIMQKHPGWVGLLQSTILESVGCIW 39
FA +Q HPG G+L+S L +GC+
Sbjct: 11 FAQALQTHPGVAGVLRSYNLGCIGCMG 37
>pdb|1G3N|C Chain C, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|G Chain G, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 257
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 94 TVCPVAIKYNKIFV-------DAFWNSRKQSFTMHLLQLMTSWAV-VCDVWYLEPQTL 143
T+C I YN + + D+ + + +QS T H+ +L+ +W VC + LEP +
Sbjct: 15 TLCEDRIFYNILEIEPRFLTSDSVFGTFQQSLTSHMRKLLGTWMFSVCQEYNLEPNVV 72
>pdb|3LM4|A Chain A, Crystal Structure Of 2,3-Dihydroxy Biphenyl Dioxygenase
From Rhodococcus Sp. (Strain Rha1)
pdb|3LM4|B Chain B, Crystal Structure Of 2,3-Dihydroxy Biphenyl Dioxygenase
From Rhodococcus Sp. (Strain Rha1)
pdb|3LM4|C Chain C, Crystal Structure Of 2,3-Dihydroxy Biphenyl Dioxygenase
From Rhodococcus Sp. (Strain Rha1)
pdb|3LM4|D Chain D, Crystal Structure Of 2,3-Dihydroxy Biphenyl Dioxygenase
From Rhodococcus Sp. (Strain Rha1)
Length = 339
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 165 GLKKVPWDGYLKYSRPSPKHRERKQQSFA 193
G K+PW+ Y Y PSP ++ + +A
Sbjct: 300 GGAKLPWESYFTYGTPSPLSLDQHIEKYA 328
>pdb|3Q2K|A Chain A, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|B Chain B, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|C Chain C, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|D Chain D, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|E Chain E, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|F Chain F, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|G Chain G, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|H Chain H, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|I Chain I, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|J Chain J, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|K Chain K, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|L Chain L, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|M Chain M, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|N Chain N, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|O Chain O, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|P Chain P, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
Length = 370
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 42 RSEAKDREIVARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKKGAFELG 92
R EA+D + A + R G+ N +L +P+ + T++ +KG +G
Sbjct: 236 RIEAEDTGVAALRWRHGAMGSINVTMLTYPQN--LEGSITILGEKGTVRVG 284
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,936,065
Number of Sequences: 62578
Number of extensions: 226851
Number of successful extensions: 640
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 638
Number of HSP's gapped (non-prelim): 6
length of query: 203
length of database: 14,973,337
effective HSP length: 94
effective length of query: 109
effective length of database: 9,091,005
effective search space: 990919545
effective search space used: 990919545
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)