Query 028832
Match_columns 203
No_of_seqs 208 out of 1264
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 04:37:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028832.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028832hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iuq_A Glycerol-3-phosphate ac 99.7 1.1E-18 3.7E-23 148.9 0.8 156 1-165 141-342 (367)
2 1zxx_A 6-phosphofructokinase; 37.4 49 0.0017 27.3 5.2 60 13-74 162-224 (319)
3 1pfk_A Phosphofructokinase; tr 35.8 54 0.0018 27.1 5.2 60 13-74 163-225 (320)
4 3u5e_L 60S ribosomal protein L 27.2 10 0.00035 29.2 -0.6 57 29-98 87-147 (199)
5 1otf_A 4-oxalocrotonate tautom 24.5 71 0.0024 18.5 3.1 34 133-169 3-36 (62)
6 2lnd_A De novo designed protei 23.2 48 0.0016 21.8 2.2 22 146-167 85-106 (112)
7 2x4k_A 4-oxalocrotonate tautom 23.1 79 0.0027 18.2 3.2 35 132-169 5-39 (63)
8 2opa_A Probable tautomerase YW 22.5 84 0.0029 18.1 3.2 34 133-169 3-36 (61)
9 4a3s_A 6-phosphofructokinase; 22.2 1.3E+02 0.0044 24.7 5.2 61 14-76 163-226 (319)
10 3ry0_A Putative tautomerase; o 21.6 87 0.003 18.6 3.2 34 133-169 3-36 (65)
11 3abf_A 4-oxalocrotonate tautom 21.0 1.1E+02 0.0036 17.9 3.5 35 132-169 3-37 (64)
12 3ivz_A Nitrilase; alpha-beta s 20.0 87 0.003 24.3 3.6 26 49-76 21-46 (262)
No 1
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=99.70 E-value=1.1e-18 Score=148.86 Aligned_cols=156 Identities=9% Similarity=0.067 Sum_probs=105.8
Q ss_pred Cccceeecc--c-------CceEEEEeccCC---chhhHHHHHHhhcCeEEE----E------CCCchhHHHHHHHHHHH
Q 028832 1 MIDFIILEQ--M-------TAFAVIMQKHPG---WVGLLQSTILESVGCIWF----N------RSEAKDREIVARKLRDH 58 (203)
Q Consensus 1 ~lDil~l~~--~-------~p~~fv~k~~~~---~~~~i~g~~~~~~g~I~V----d------R~~~~~~~~~~~~~~~~ 58 (203)
++|++++.. . .++.||+|++.. ...| |+.+ +.++||+. | |++.+...++++++.+.
T Consensus 141 ~~D~~vi~~~l~~~~~~l~~~~~fVAk~eL~~~Pl~~P-fs~g-~~l~cI~~kk~id~~p~l~r~~~r~n~ksl~~~~~~ 218 (367)
T 1iuq_A 141 EADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKP-FSIG-RNLICVYSKKHMFDIPELTETKRKANTRSLKEMALL 218 (367)
T ss_dssp TTHHHHHHHHHTTTCHHHHHHCEEEECTHHHHCTTTHH-HHHT-SEEEECCCGGGTTSSGGGHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHhhcccccccceEEEeehhhhcCccccc-hhhh-hheeeEEecccCCCcchhhhhhhHHHHHHHHHHHHH
Confidence 368887664 2 278999999532 2224 3666 66789996 6 77766777889999999
Q ss_pred HhCCCCCcEEEecCceeeCC----Cc--eeccccccc----c----cCCe--EEEEEEEccccccceeccCCCccHHHHH
Q 028832 59 VQGTDNNPLLIFPEGTCVNN----HY--TVMFKKGAF----E----LGCT--VCPVAIKYNKIFVDAFWNSRKQSFTMHL 122 (203)
Q Consensus 59 l~~~~g~~l~IFPEGTrs~g----~~--l~~Fk~Gaf----~----~~~p--V~Pvai~~~~~~~~~~~~~~~~~~~~~~ 122 (203)
++++ |.+|+|||||||+++ +. ..+|++|+| . +++| |+||+|. ++..+++.=.. +.++...
T Consensus 219 Lk~G-G~sI~IFPEGTRsR~~~~~g~l~~~~Fk~gs~~~~~~LA~ksg~P~hIvPvaI~-t~~imppp~~v-e~~~g~~- 294 (367)
T 1iuq_A 219 LRGG-SQLIWIAPSGGRDRPDPSTGEWYPAPFDASSVDNMRRLIQHSDVPGHLFPLALL-CHDIMPPPSQV-EIEIGEK- 294 (367)
T ss_dssp HHHC-CCEEEECTTCSCCCBCTTTCCBCCCCCCHHHHHHHHHHHHTSSSCEEEEEEEEE-CGGGSCCC------------
T ss_pred HHcC-CeEEEEeCCCCCCCCCCCCCccccccccchhhhHHHHHHHHcCCCceEEEEEEE-eccccCCcccc-ccccccc-
Confidence 9874 689999999999995 44 456999988 3 4899 9999999 66655431000 0011110
Q ss_pred HHHhcccceEEEEEEeCCccCCC----C----CCHHHHHHHHHHHHHHHcC
Q 028832 123 LQLMTSWAVVCDVWYLEPQTLRP----G----ETAIEFAERVRDIISVRAG 165 (203)
Q Consensus 123 ~~~~~~~~~~v~v~~l~pi~~~~----~----~~~~~la~~vr~~i~~~l~ 165 (203)
+ ...+ ..|.|.|++||+..+ . +..+++++.+++.|++.+.
T Consensus 295 -r-~i~~-~~V~v~ig~pI~~~~l~~~~e~~~e~~~~l~e~v~~~I~~~y~ 342 (367)
T 1iuq_A 295 -R-VIAF-NGAGLSVAPEISFEEIAATHKNPEEVREAYSKALFDSVAMQYN 342 (367)
T ss_dssp -C-CCCC-BCCEEEECCCCCHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred -c-eeec-ccEEEEECCccchhhccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 0 1122 468999999997531 1 2245799999999988774
No 2
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=37.37 E-value=49 Score=27.34 Aligned_cols=60 Identities=17% Similarity=0.263 Sum_probs=43.9
Q ss_pred eEEEEec---cCCchhhHHHHHHhhcCeEEEECCCchhHHHHHHHHHHHHhCCCCCcEEEecCce
Q 028832 13 FAVIMQK---HPGWVGLLQSTILESVGCIWFNRSEAKDREIVARKLRDHVQGTDNNPLLIFPEGT 74 (203)
Q Consensus 13 ~~fv~k~---~~~~~~~i~g~~~~~~g~I~VdR~~~~~~~~~~~~~~~~l~~~~g~~l~IFPEGT 74 (203)
..||..- +.+|.. +...++...+.|+|.-. +-+..++.+.+.++.+++.+..+++-+||.
T Consensus 162 rv~iVEvMGR~aG~lA-l~a~lA~ga~~iliPE~-~~~~~~i~~~i~~~~~~gk~~~iIvvaEG~ 224 (319)
T 1zxx_A 162 RVFIVNVMGRNCGDIA-MRVGVACGADAIVIPER-PYDVEEIANRLKQAQESGKDHGLVVVAEGV 224 (319)
T ss_dssp CEEEEEECCTTCCHHH-HHHHHHTTCSEEECTTS-CCCHHHHHHHHHHHHHTTCCCEEEEEETTT
T ss_pred CEEEEEeCCCCHHHHH-HHHHHhcCCCEEEeCCC-CCCHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 3455553 668886 56677778888888643 335667888888888666678999999997
No 3
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=35.80 E-value=54 Score=27.12 Aligned_cols=60 Identities=10% Similarity=0.118 Sum_probs=43.7
Q ss_pred eEEEEec---cCCchhhHHHHHHhhcCeEEEECCCchhHHHHHHHHHHHHhCCCCCcEEEecCce
Q 028832 13 FAVIMQK---HPGWVGLLQSTILESVGCIWFNRSEAKDREIVARKLRDHVQGTDNNPLLIFPEGT 74 (203)
Q Consensus 13 ~~fv~k~---~~~~~~~i~g~~~~~~g~I~VdR~~~~~~~~~~~~~~~~l~~~~g~~l~IFPEGT 74 (203)
-.||..- +.+|.. +...++...+.|+|.-. +-+..++.+.+.++.+++.+..+++-+||.
T Consensus 163 rv~iVEvMGR~aG~lA-l~a~lA~ga~~iliPE~-~~~~~~i~~~i~~~~~~gk~~~iIvvaEG~ 225 (320)
T 1pfk_A 163 RISVVEVMGRYCGDLT-LAAAIAGGCEFVVVPEV-EFSREDLVNEIKAGIAKGKKHAIVAITEHM 225 (320)
T ss_dssp CEEEEEECCTTCCHHH-HHHHHHTTCSEEECTTS-CCCHHHHHHHHHHHHHTTCSCEEEEEESSS
T ss_pred CEEEEEeCCcCHHHHH-HHHHHhcCCCEEEeCCC-CCCHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 3455553 668886 56677778888888643 335667888888888665678999999996
No 4
>3u5e_L 60S ribosomal protein L13-A, 60S ribosomal protein L11-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_L 4b6a_L
Probab=27.20 E-value=10 Score=29.24 Aligned_cols=57 Identities=11% Similarity=0.248 Sum_probs=30.2
Q ss_pred HHHHhhcCeEEEECCCc----hhHHHHHHHHHHHHhCCCCCcEEEecCceeeCCCceecccccccccCCeEEEE
Q 028832 29 STILESVGCIWFNRSEA----KDREIVARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKKGAFELGCTVCPV 98 (203)
Q Consensus 29 g~~~~~~g~I~VdR~~~----~~~~~~~~~~~~~l~~~~g~~l~IFPEGTrs~g~~l~~Fk~Gaf~~~~pV~Pv 98 (203)
..+++.+| |.||-... ++...-++.+.++. ..|++||-.. ...++|+-+...+|.||
T Consensus 87 ~k~A~tiG-I~VD~RR~nks~Esl~~NVqrLk~y~-----sklilFPrk~-------~~~kkGatq~~g~vmPi 147 (199)
T 3u5e_L 87 AAYARTIG-IAVDHRRQNRNQEIFDANVQRLKEYQ-----SKIIVFPRNG-------KAPEAEQVLSAAATFPI 147 (199)
T ss_dssp HHHHHHTT-BCCCTTCCCCBHHHHHHHHHHHHHHH-----HTEEECCSSS-------CCCCCCCCCCSTTTSCC
T ss_pred HHHhcccC-eeeccccccccHHHHHHHHHHHHHHH-----hheeEecccc-------ccccccccccccccccc
Confidence 35677776 89994322 12233344444443 3599999432 22345555544455554
No 5
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=24.46 E-value=71 Score=18.50 Aligned_cols=34 Identities=12% Similarity=0.182 Sum_probs=24.6
Q ss_pred EEEEEeCCccCCCCCCHHHHHHHHHHHHHHHcCCCcC
Q 028832 133 CDVWYLEPQTLRPGETAIEFAERVRDIISVRAGLKKV 169 (203)
Q Consensus 133 v~v~~l~pi~~~~~~~~~~la~~vr~~i~~~l~~~~~ 169 (203)
++|...+..+ .+..++|++.+-+.+.+.++++..
T Consensus 3 i~I~~~~grs---~e~k~~l~~~i~~~l~~~lg~p~~ 36 (62)
T 1otf_A 3 AQLYIIEGRT---DEQKETLIRQVSEAMANSLDAPLE 36 (62)
T ss_dssp EEEEEESCCC---HHHHHHHHHHHHHHHHHHHTCCGG
T ss_pred EEEEEcCCCC---HHHHHHHHHHHHHHHHHHhCcCcc
Confidence 5566554332 345678999999999999998764
No 6
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=23.21 E-value=48 Score=21.84 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=16.1
Q ss_pred CCCHHHHHHHHHHHHHHHcCCC
Q 028832 146 GETAIEFAERVRDIISVRAGLK 167 (203)
Q Consensus 146 ~~~~~~la~~vr~~i~~~l~~~ 167 (203)
..|++++.++||+-+..+-.++
T Consensus 85 stdpeeltqrvreflktagsle 106 (112)
T 2lnd_A 85 STDPEELTQRVREFLKTAGSLE 106 (112)
T ss_dssp CCCHHHHHHHHHHHHHHTTSCC
T ss_pred cCCHHHHHHHHHHHHHhcccch
Confidence 3578999999998876654443
No 7
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=23.11 E-value=79 Score=18.17 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=25.2
Q ss_pred EEEEEEeCCccCCCCCCHHHHHHHHHHHHHHHcCCCcC
Q 028832 132 VCDVWYLEPQTLRPGETAIEFAERVRDIISVRAGLKKV 169 (203)
Q Consensus 132 ~v~v~~l~pi~~~~~~~~~~la~~vr~~i~~~l~~~~~ 169 (203)
.++|......+ .+..++|++.+.+.+.+.+|.+..
T Consensus 5 ~i~i~~~~g~s---~e~k~~l~~~l~~~l~~~lg~p~~ 39 (63)
T 2x4k_A 5 IVNVKLLEGRS---DEQLKNLVSEVTDAVEKTTGANRQ 39 (63)
T ss_dssp EEEEEEESCCC---HHHHHHHHHHHHHHHHHHHCCCGG
T ss_pred EEEEEEcCCCC---HHHHHHHHHHHHHHHHHHhCcCcc
Confidence 35566554332 244678999999999999998764
No 8
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=22.48 E-value=84 Score=18.14 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=24.5
Q ss_pred EEEEEeCCccCCCCCCHHHHHHHHHHHHHHHcCCCcC
Q 028832 133 CDVWYLEPQTLRPGETAIEFAERVRDIISVRAGLKKV 169 (203)
Q Consensus 133 v~v~~l~pi~~~~~~~~~~la~~vr~~i~~~l~~~~~ 169 (203)
++|...+..+ .+..++|++.+-+.+.+.+|++..
T Consensus 3 i~i~~~~grs---~eqk~~l~~~i~~~l~~~lg~~~~ 36 (61)
T 2opa_A 3 VTVKMLEGRT---DEQKRNLVEKVTEAVKETTGASEE 36 (61)
T ss_dssp EEEEEESCCC---HHHHHHHHHHHHHHHHHHHCCCGG
T ss_pred EEEEEcCCCC---HHHHHHHHHHHHHHHHHHhCcCcC
Confidence 5566554332 345678999999999999998754
No 9
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=22.16 E-value=1.3e+02 Score=24.70 Aligned_cols=61 Identities=15% Similarity=0.261 Sum_probs=43.3
Q ss_pred EEEEec---cCCchhhHHHHHHhhcCeEEEECCCchhHHHHHHHHHHHHhCCCCCcEEEecCceee
Q 028832 14 AVIMQK---HPGWVGLLQSTILESVGCIWFNRSEAKDREIVARKLRDHVQGTDNNPLLIFPEGTCV 76 (203)
Q Consensus 14 ~fv~k~---~~~~~~~i~g~~~~~~g~I~VdR~~~~~~~~~~~~~~~~l~~~~g~~l~IFPEGTrs 76 (203)
.||..- +.+|.. +...++.....|+|.- .+-+.....+.+.+..+.+.+..+++-.||...
T Consensus 163 v~ivEvMGR~aG~lA-~~a~la~ga~~iliPE-~~~~~~~~~~~i~~~~~~g~~~~iivvaEG~~~ 226 (319)
T 4a3s_A 163 TYVIEVMGRHAGDIA-LWAGLAGGAESILIPE-ADYDMHEIIARLKRGHERGKKHSIIIVAEGVGS 226 (319)
T ss_dssp EEEEEECCTTCCHHH-HHHHHHHTCSEEEBTT-BCCCHHHHHHHHHHHHTTTCCCEEEEEETTTCC
T ss_pred eEEEEeCCcchhHHH-HHHHhccCCCEEEecC-CCCCHHHHHHHHHHHHHcCCCceEEEEECCCCc
Confidence 445543 678886 5667778888888864 344566778888777766556789999999744
No 10
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=21.63 E-value=87 Score=18.62 Aligned_cols=34 Identities=15% Similarity=0.096 Sum_probs=24.9
Q ss_pred EEEEEeCCccCCCCCCHHHHHHHHHHHHHHHcCCCcC
Q 028832 133 CDVWYLEPQTLRPGETAIEFAERVRDIISVRAGLKKV 169 (203)
Q Consensus 133 v~v~~l~pi~~~~~~~~~~la~~vr~~i~~~l~~~~~ 169 (203)
++|.+.+..+ .+..++|++.+.+.+.+.+|++..
T Consensus 3 i~I~~~~Grs---~eqk~~L~~~it~~~~~~lg~p~~ 36 (65)
T 3ry0_A 3 IRVTLLEGRS---PQEVAALGEALTAAAHETLGTPVE 36 (65)
T ss_dssp EEEEEESCCC---HHHHHHHHHHHHHHHHHHHCCCGG
T ss_pred EEEEEcCCCC---HHHHHHHHHHHHHHHHHHhCcCcc
Confidence 5566655322 345688999999999999998764
No 11
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=21.04 E-value=1.1e+02 Score=17.86 Aligned_cols=35 Identities=26% Similarity=0.211 Sum_probs=25.1
Q ss_pred EEEEEEeCCccCCCCCCHHHHHHHHHHHHHHHcCCCcC
Q 028832 132 VCDVWYLEPQTLRPGETAIEFAERVRDIISVRAGLKKV 169 (203)
Q Consensus 132 ~v~v~~l~pi~~~~~~~~~~la~~vr~~i~~~l~~~~~ 169 (203)
.++|......+ .+..++|++.+-+.+++.+|.+..
T Consensus 3 ~i~i~~~~g~s---~eqk~~l~~~lt~~l~~~lg~~~~ 37 (64)
T 3abf_A 3 VLKVTLLEGRP---PEKKRELVRRLTEMASRLLGEPYE 37 (64)
T ss_dssp EEEEEEETTCC---HHHHHHHHHHHHHHHHHHTTCCGG
T ss_pred EEEEEECCCCC---HHHHHHHHHHHHHHHHHHhCCCcc
Confidence 35666655432 244678999999999999998654
No 12
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Probab=20.05 E-value=87 Score=24.30 Aligned_cols=26 Identities=12% Similarity=0.231 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhCCCCCcEEEecCceee
Q 028832 49 EIVARKLRDHVQGTDNNPLLIFPEGTCV 76 (203)
Q Consensus 49 ~~~~~~~~~~l~~~~g~~l~IFPEGTrs 76 (203)
.++.+.+.+..++ |-.|++|||-..+
T Consensus 21 ~~~~~~i~~A~~~--gadlvvfPE~~~~ 46 (262)
T 3ivz_A 21 SKAEKLIKEASKQ--GAQLVVLPELFDT 46 (262)
T ss_dssp HHHHHHHHHHHHT--TCSEEECCTTTTT
T ss_pred HHHHHHHHHHHHC--CCCEEEeCCCccc
Confidence 3444444444333 5789999997655
Done!