RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 028832
(203 letters)
>gnl|CDD|215447 PLN02833, PLN02833, glycerol acyltransferase family protein.
Length = 376
Score = 452 bits (1164), Expect = e-162
Identities = 181/203 (89%), Positives = 193/203 (95%)
Query: 1 MIDFIILEQMTAFAVIMQKHPGWVGLLQSTILESVGCIWFNRSEAKDREIVARKLRDHVQ 60
MIDFI+LEQMT FAVIMQKHPGWVG LQ+TILESVGCIWFNR+EAKDRE+VA+KLRDHVQ
Sbjct: 174 MIDFIVLEQMTPFAVIMQKHPGWVGFLQNTILESVGCIWFNRTEAKDREVVAKKLRDHVQ 233
Query: 61 GTDNNPLLIFPEGTCVNNHYTVMFKKGAFELGCTVCPVAIKYNKIFVDAFWNSRKQSFTM 120
D NPLLIFPEGTCVNN YTVMFKKGAFELGCTVCP+AIKYNKIFVDAFWNSRKQSFTM
Sbjct: 234 DPDRNPLLIFPEGTCVNNEYTVMFKKGAFELGCTVCPIAIKYNKIFVDAFWNSRKQSFTM 293
Query: 121 HLLQLMTSWAVVCDVWYLEPQTLRPGETAIEFAERVRDIISVRAGLKKVPWDGYLKYSRP 180
HLL+LMTSWAVVCDVWYLEPQTLRPGET IEFAERVRD+I+ RAGLKKVPWDGYLKY RP
Sbjct: 294 HLLRLMTSWAVVCDVWYLEPQTLRPGETPIEFAERVRDMIAKRAGLKKVPWDGYLKYYRP 353
Query: 181 SPKHRERKQQSFAESVLRRLDEK 203
SPKH E+KQQSFAES+LRRL+EK
Sbjct: 354 SPKHTEKKQQSFAESLLRRLEEK 376
>gnl|CDD|153253 cd07991, LPLAT_LPCAT1-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LPCAT1-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
lysophosphatidylcholine acyltransferase 1 (LPCAT-1),
glycerol-3-phosphate acyltransferase 3 (GPAT3), and
similar sequences.
Length = 211
Score = 247 bits (633), Expect = 5e-84
Identities = 75/178 (42%), Positives = 103/178 (57%), Gaps = 2/178 (1%)
Query: 1 MIDFIILEQMTAFAVIMQKHPGWVGLLQSTILESVGCIWFNRSEAKDREIVARKLRDHVQ 60
ID +IL +++ +K G + + TIL ++GCI+ +RSE KDR+ V ++++
Sbjct: 35 FIDPLILFSDLFPSIVAKKELGKLPFIG-TILRALGCIFVDRSEPKDRKKVVEEIKERAT 93
Query: 61 GTDNNPLLIFPEGTCVNNHYTVMFKKGAFELGCTVCPVAIKYNKIFVDAFWNSRKQSFTM 120
+ P+LIFPEGT N +MFKKGAFE G V PVAI+Y FVDAFWNS S M
Sbjct: 94 DPNWPPILIFPEGTTTNGKALIMFKKGAFEPGVPVQPVAIRYPNKFVDAFWNSSGYSSLM 153
Query: 121 HLLQLMTSWAVVCDVWYLEPQTL-RPGETAIEFAERVRDIISVRAGLKKVPWDGYLKY 177
+L +L+T A V +V +L T GE EFA RVR I++ + GL W G K
Sbjct: 154 YLFRLLTQPANVLEVEFLPVYTPSEEGEDPKEFANRVRLIMANKLGLPATDWTGEDKR 211
>gnl|CDD|216567 pfam01553, Acyltransferase, Acyltransferase. This family contains
acyltransferases involved in phospholipid biosynthesis
and other proteins of unknown function. This family also
includes tafazzin, the Barth syndrome gene.
Length = 131
Score = 75.0 bits (185), Expect = 1e-17
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 12/109 (11%)
Query: 2 IDFIIL-----EQMTAFAVIMQKHPGWVGLLQSTILESVGCIWFNRSEAKDREIVARKLR 56
+D ++L ++ + + + L ++ +GCI+ +R AKD L
Sbjct: 26 LDPLLLSLLLPKRGRPLVFVAKDELLNLPL-LGWLMRLLGCIFIDRKNAKDAANTLEYLV 84
Query: 57 DHVQGTDNNPLLIFPEGTCVNNHYTVMFKKGAFEL----GCTVCPVAIK 101
+ ++ + +LIFPEGT + FKKGAF L G + PVAI
Sbjct: 85 ELLR--EGELVLIFPEGTRSRGGELLPFKKGAFRLAREAGVPIVPVAIS 131
>gnl|CDD|214724 smart00563, PlsC, Phosphate acyltransferases. Function in
phospholipid biosynthesis and have either
glycerolphosphate, 1-acylglycerolphosphate, or
2-acylglycerolphosphoethanolamine acyltransferase
activities. Tafazzin, the product of the gene mutated in
patients with Barth syndrome, is a member of this
family.
Length = 118
Score = 65.5 bits (160), Expect = 5e-14
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 14/111 (12%)
Query: 2 IDFIIL-----EQMTAFAVIMQKHPGWVGLLQSTILESVGCIWFNRSEAKDREIVARKLR 56
+D ++L ++ + +K +V LL +L +G I+ +RS LR
Sbjct: 11 LDPLVLSALLPRKLGRVRFVAKKELFYVPLL-GWLLRLLGAIFIDRSN---GRKARAALR 66
Query: 57 DHVQGTDNN-PLLIFPEGTCVNNHYTVMFKKGAFEL----GCTVCPVAIKY 102
+ V+ LLIFPEGT + FKKGA L G + PVAI+
Sbjct: 67 EAVELLKEGEWLLIFPEGTRSRPGKLLPFKKGAARLALEAGVPIVPVAIRG 117
>gnl|CDD|153251 cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
AGPAT-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), Tafazzin (product of Barth syndrome gene), and
similar proteins.
Length = 184
Score = 48.0 bits (115), Expect = 4e-07
Identities = 30/137 (21%), Positives = 50/137 (36%), Gaps = 22/137 (16%)
Query: 29 STILESVGCIWFNRSEAKDREIVARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVM-FKKG 87
+L +G I +R + R+ + ++ + ++IFPEGT + ++ FK G
Sbjct: 64 GWLLRLLGAIPIDRGNGRSAREALREAIEALK--EGESVVIFPEGT-RSRDGELLPFKSG 120
Query: 88 AFEL----GCTVCPVAIKYNKIFVDAFWNSRKQSFTMHLLQLMTSWAVVCDVWYLEPQTL 143
AF L G + PVAI K+ V EP
Sbjct: 121 AFRLAKEAGVPIVPVAISGT----WGSLPKGKKLP----------RPGRVTVRIGEPIPP 166
Query: 144 RPGETAIEFAERVRDII 160
E A E + +R+ +
Sbjct: 167 EGLELAEEDRKELREKV 183
>gnl|CDD|153244 cd06551, LPLAT, Lysophospholipid acyltransferases (LPLATs) of
glycerophospholipid biosynthesis. Lysophospholipid
acyltransferase (LPLAT) superfamily members are
acyltransferases of de novo and remodeling pathways of
glycerophospholipid biosynthesis. These proteins
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
superfamily are LPLATs such as glycerol-3-phosphate
1-acyltransferase (GPAT, PlsB),
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), lysophosphatidylcholine acyltransferase 1
(LPCAT-1), lysophosphatidylethanolamine acyltransferase
(LPEAT, also known as, MBOAT2, membrane-bound
O-acyltransferase domain-containing protein 2), lipid A
biosynthesis lauroyl/myristoyl acyltransferase,
2-acylglycerol O-acyltransferase (MGAT),
dihydroxyacetone phosphate acyltransferase (DHAPAT, also
known as 1 glycerol-3-phosphate O-acyltransferase 1) and
Tafazzin (the protein product of the Barth syndrome
(TAZ) gene).
Length = 187
Score = 37.8 bits (88), Expect = 0.001
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 10/76 (13%)
Query: 40 FNRSEAKDREIVARKLRDHVQGTDNNPLLIFPEGTCVN-NHYTVMFKKGAFELGC----T 94
RS AK + VAR L + + IFPEGT + + FK G L
Sbjct: 82 SPRSAAKSLKYVARLLSKP-----GSVVWIFPEGTRTRRDKRPLQFKPGVAHLAEKAGVP 136
Query: 95 VCPVAIKYNKIFVDAF 110
+ PVA++Y + F
Sbjct: 137 IVPVALRYTFELFEQF 152
>gnl|CDD|223282 COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase
[Lipid metabolism].
Length = 255
Score = 36.4 bits (84), Expect = 0.006
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 27 LQSTILESVGCIWFNRSEAKDREIVARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVM-FK 85
L +L +G I E D E + + G + L+IFPEGT ++ FK
Sbjct: 104 LLGWLLRLLGAI-PVDRENPDDETLRAAVARLKAGGRS--LVIFPEGTRSRGGEELLPFK 160
Query: 86 KGAF----ELGCTVCPVAIKY 102
+GA E G + PVAI
Sbjct: 161 RGAARLALEAGVPIVPVAIVG 181
>gnl|CDD|129621 TIGR00530, AGP_acyltrn, 1-acyl-sn-glycerol-3-phosphate
acyltransferases. This model describes the core
homologous region of a collection of related proteins,
several of which are known to act as
1-acyl-sn-glycerol-3-phosphate acyltransferases (EC
2.3.1.51). Proteins scoring above the trusted cutoff are
likely to have the same general activity. However, there
is variation among characterized members as to whether
the acyl group can be donated by acyl carrier protein or
coenzyme A, and in the length and saturation of the
donated acyl group. 1-acyl-sn-glycerol-3-phosphate
acyltransferase is also called 1-AGP acyltransferase,
lysophosphatidic acid acyltransferase, and LPA
acyltransferase [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 130
Score = 35.4 bits (82), Expect = 0.006
Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 9/104 (8%)
Query: 3 DFIILEQMTA--FAVIMQKHPGWVGLLQSTILESVGCIWFNRSEAKDREIVARKLRDHVQ 60
D + L I +K W+ + + G I+ +R + + + ++
Sbjct: 29 DPLTLSAAFPPPIVFIAKKELKWIPFFGIMLWLT-GAIFIDRENIRAIATALKAAIEVLK 87
Query: 61 GTDNNPLLIFPEGTCVNNHYTVMFKKGAFEL----GCTVCPVAI 100
+ +FPEGT + FKKGAF + G + PV +
Sbjct: 88 --QGRSIGVFPEGTRSRGRDILPFKKGAFHIAIKAGVPILPVVL 129
>gnl|CDD|153254 cd07992, LPLAT_AAK14816-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: Unknown
AAK14816-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are uncharacterized
glycerol-3-phosphate acyltransferases such as the
Plasmodium falciparum locus AAK14816 putative
acyltransferase, and similar proteins.
Length = 203
Score = 31.5 bits (72), Expect = 0.22
Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 10/66 (15%)
Query: 31 ILESVGCIWFNR--------SEAKDREIVARKLRDHVQGTDNNPLLIFPEGTCVNNHYTV 82
+LES G I R V + + ++ + IFPEG + +
Sbjct: 71 LLESFGAIPVYRPKDLARGGIGKISNAAVFDAVGEALK--AGGAIGIFPEGGSHDRPRLL 128
Query: 83 MFKKGA 88
K GA
Sbjct: 129 PLKAGA 134
>gnl|CDD|153252 cd07990, LPLAT_LCLAT1-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LCLAT1-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
Lysocardiolipin acyltransferase 1 (LCLAT1) or
1-acyl-sn-glycerol-3-phosphate acyltransferase and
similar proteins.
Length = 193
Score = 31.1 bits (71), Expect = 0.30
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 41 NRSEAKDREIVARKLRDHVQGTDNNPLLIFPEGT 74
R KD + + R+L+ + LLIFPEGT
Sbjct: 81 KRKWEKDEKTIKRQLKRLKDSPEPFWLLIFPEGT 114
>gnl|CDD|215488 PLN02901, PLN02901, 1-acyl-sn-glycerol-3-phosphate acyltransferase.
Length = 214
Score = 30.5 bits (69), Expect = 0.51
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 36 GCIWFNRSEAKDREIVARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKKGAFEL---- 91
G I R + + + ++ + ++ + FPEGT + FKKGAF +
Sbjct: 96 GHIPLKRMDRRSQLECLKRCMELLK--KGASVFFFPEGTRSKDGKLAAFKKGAFSVAAKT 153
Query: 92 GCTVCPVAI 100
G V P+ +
Sbjct: 154 GVPVVPITL 162
>gnl|CDD|233882 TIGR02474, pec_lyase, pectate lyase, PelA/Pel-15E family. Members
of this family are isozymes of pectate lyase (EC
4.2.2.2), also called polygalacturonic transeliminase
and alpha-1,4-D-endopolygalacturonic acid lyase [Energy
metabolism, Biosynthesis and degradation of
polysaccharides].
Length = 290
Score = 28.6 bits (64), Expect = 2.4
Identities = 6/33 (18%), Positives = 10/33 (30%)
Query: 36 GCIWFNRSEAKDREIVARKLRDHVQGTDNNPLL 68
G WF+ S + V + +L
Sbjct: 211 GVAWFDTSRIRGYAYVKSDAAYPLVPEPGAKVL 243
>gnl|CDD|237426 PRK13558, PRK13558, bacterio-opsin activator; Provisional.
Length = 665
Score = 28.3 bits (63), Expect = 3.5
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 144 RPGETAIEFAERVRDIISVR--AGLKKVPWDGYLKYSRPS 181
PGET EF + + ++ R L+K GY ++ R
Sbjct: 592 DPGETPDEFRASLENDLTDRQLTALQKAYVSGYFEWPRRV 631
>gnl|CDD|222220 pfam13559, DUF4129, Domain of unknown function (DUF4129). This
presumed domain is found at the C-terminus of proteins
that contain a transglutaminase core domain. The
function of this domain is unknown. The domain has a
conserved TXXE motif.
Length = 72
Score = 26.1 bits (58), Expect = 3.6
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 143 LRPGETAIEFAERVRD 158
RP ET EFA R+
Sbjct: 17 RRPSETPREFARRLAA 32
>gnl|CDD|219207 pfam06864, PAP_PilO, Pilin accessory protein (PilO). This family
consists of several enterobacterial PilO proteins. The
function of PilO is unknown although it has been
suggested that it is a cytoplasmic protein in the
absence of other Pil proteins, but PilO protein is
translocated to the outer membrane in the presence of
other Pil proteins. Alternatively, PilO protein may form
a complex with other Pil protein(s). PilO has been
predicted to function as a component of the pilin
transport apparatus and thin-pilus basal body. This
family does not seem to be related to pfam04350.
Length = 414
Score = 27.8 bits (62), Expect = 4.1
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 142 TLRPGETAIEFAERVRDIISVRA 164
PG T +F++RVR+I
Sbjct: 267 ERTPGGTVADFSQRVREIFDQTP 289
>gnl|CDD|183061 PRK11260, PRK11260, cystine transporter subunit; Provisional.
Length = 266
Score = 27.8 bits (62), Expect = 4.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 150 IEFAERVRDIISVRAGLKKVPWDGYL 175
+EFAE + + V+A LK WDG L
Sbjct: 68 VEFAEALAKHLGVKASLKPTKWDGML 93
>gnl|CDD|227513 COG5186, PAP1, Poly(A) polymerase [RNA processing and
modification].
Length = 552
Score = 27.6 bits (61), Expect = 5.8
Identities = 17/114 (14%), Positives = 35/114 (30%), Gaps = 23/114 (20%)
Query: 9 QMTAFAVIMQKHPGWVGLLQSTI------LESVGCI------------WFNRSEAKDREI 50
++TA + + W GL++S I LE+V I +N + E
Sbjct: 363 EITAMSSCEEDFLKWEGLVESKIRILVSKLEAVDDILYAHPFPKAFRKVYNCVAEESIEK 422
Query: 51 VARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKKGAFELGCTVCPVAIKYNK 104
+ + V + + M + ++ CT + +
Sbjct: 423 IGSGVTLEVAYESTDHEKL---ANDTVPEEESM--EDGMKVYCTTFYIGLDVIP 471
>gnl|CDD|178115 PLN02499, PLN02499, glycerol-3-phosphate acyltransferase.
Length = 498
Score = 27.1 bits (60), Expect = 6.8
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 46 KDREIVARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKKGAFELGCTVCPVAIKY 102
+ R++ A K++ + D L++ PEGT + + F EL + PVA+ Y
Sbjct: 337 RIRDVDAEKIKRELARGD---LVVCPEGTTCREPFLLRFSALFAELTDRIVPVAMNY 390
>gnl|CDD|215295 PLN02538, PLN02538, 2,3-bisphosphoglycerate-independent
phosphoglycerate mutase.
Length = 558
Score = 27.3 bits (61), Expect = 7.0
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 88 AFELGCTVCPVAIKYNKIFVDAFWNSRKQSF---TMHLLQLMTSWAV 131
F G + +A+ KIF + K++F T+HL+ L++ V
Sbjct: 94 IFAQGAKLVDLALASGKIFEGEGFKYIKEAFATGTLHLIGLLSDGGV 140
>gnl|CDD|153255 cd07993, LPLAT_DHAPAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: GPAT-like.
Lysophospholipid acyltransferase (LPLAT) superfamily
member: acyltransferases of de novo and remodeling
pathways of glycerophospholipid biosynthesis which
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
subgroup are such LPLATs as dihydroxyacetone phosphate
acyltransferase (DHAPAT, also known as 1
glycerol-3-phosphate O-acyltransferase 1) and similar
proteins.
Length = 205
Score = 26.8 bits (60), Expect = 7.4
Identities = 22/101 (21%), Positives = 34/101 (33%), Gaps = 36/101 (35%)
Query: 29 STILESVGCIWFNRSEAKD-------REIVARKLRDHVQGTDNNPLLIFPEGT------- 74
T+L +G + RS KD +E V L++ PL F EGT
Sbjct: 65 GTLLRRLGAFFIRRSFGKDPLYRAVLQEYVQELLKNGQ------PLEFFIEGTRSRTGKL 118
Query: 75 ----------CVNNHYTVMFKKGAFELGCTVCPVAIKYNKI 105
V K + + PV+I Y+++
Sbjct: 119 LPPKLGLLSVVVE----AYLKGSVPD--VLIVPVSISYDRV 153
>gnl|CDD|218071 pfam04409, DUF530, Protein of unknown function (DUF530). Family of
hypothetical archaeal proteins.
Length = 512
Score = 27.2 bits (60), Expect = 7.4
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 143 LRPGETAIEFAERVRDIISVRAGLKKVPWDGYLKYSRPSPKHRER 187
LR + +E ++ IS+ K + D + Y S RER
Sbjct: 337 LRELKEDLEKESEIKKHISIDVPFKLLLLDLFRYYLLTSEDERER 381
>gnl|CDD|236404 PRK09193, PRK09193, indolepyruvate ferredoxin oxidoreductase;
Validated.
Length = 1165
Score = 27.1 bits (61), Expect = 9.3
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 6/28 (21%)
Query: 135 VWYLEPQTLRPGETAIEFAERVRDIISV 162
VW LEPQ +R FAE + +I+ V
Sbjct: 324 VWPLEPQGVR------AFAEGLDEILVV 345
>gnl|CDD|204376 pfam10017, DUF2260, Uncharacterized conserved protein (DUF2260).
This domain, found in various hypothetical bacterial
proteins, has no known function.
Length = 125
Score = 26.0 bits (58), Expect = 9.6
Identities = 20/74 (27%), Positives = 26/74 (35%), Gaps = 20/74 (27%)
Query: 90 ELGCTVCPVAIKYNKIFVDAFWNSRKQSFTMHLLQLMTSWAVVCDVWYLEPQTLRPGETA 149
ELG P A ++ A +N + MHL S QT+R G
Sbjct: 36 ELGGDFDPDAFEH-----RARYNEEEGRIEMHL----VS---------RRDQTVRLGGET 77
Query: 150 IEFA--ERVRDIIS 161
I FA E + S
Sbjct: 78 IHFAAGETIHTENS 91
>gnl|CDD|234178 TIGR03354, VI_FHA, type VI secretion system FHA domain protein.
Members of this protein family are FHA
(forkhead-associated) domain-containing proteins that
are part of type VI secretion loci in a considerable
number of bacteria, most of which are known pathogens.
Species include Pseudomonas aeruginosa PAO1, Aeromonas
hydrophila, Yersinia pestis, Burkholderia mallei, etc
[Protein fate, Protein and peptide secretion and
trafficking, Cellular processes, Pathogenesis].
Length = 396
Score = 26.6 bits (59), Expect = 9.7
Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 41 NRSEAKDREIVARKLRDHVQGTDNNPL 67
R+E K+ + + ++ +NNPL
Sbjct: 253 ARAELKNELRLNQT---TIRPAENNPL 276
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.137 0.435
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,469,823
Number of extensions: 956007
Number of successful extensions: 1016
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1008
Number of HSP's successfully gapped: 30
Length of query: 203
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 111
Effective length of database: 6,857,034
Effective search space: 761130774
Effective search space used: 761130774
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (25.8 bits)