RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 028832
(203 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 6e-04
Identities = 37/227 (16%), Positives = 68/227 (29%), Gaps = 58/227 (25%)
Query: 3 DFIILEQMTAFAVIMQKHPGWVGL-----------LQSTILESVGCIWFNRSEAKDR--- 48
+ + +M F + W+ L + +L + W +RS+
Sbjct: 173 SYKVQCKM-DFKIF------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 49 --EIVARKLRDHVQGTD-NNPLLIFPEGTCVNNHYTVMFKKGAFELGCTVCPVAIKYNKI 105
+ +LR ++ N LL+ V N AF L C + + K
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLN---VQNAKAW----NAFNLSCKI--LLTTRFKQ 276
Query: 106 FVDAFWNSRKQSFTM-HLLQLMT---SWAVVCDVWYLEPQTLRPGETAIE------FAER 155
D + ++ H +T +++ PQ L AE
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336
Query: 156 VRDIISVRAGLKKVPWDGYLKYSRPSPKHRERKQQSFAESVLRRLDE 202
+RD ++ WD + + K + ES L L+
Sbjct: 337 IRDGLAT--------WDNWKHVNCD-------KLTTIIESSLNVLEP 368
Score = 28.7 bits (63), Expect = 1.6
Identities = 29/213 (13%), Positives = 60/213 (28%), Gaps = 66/213 (30%)
Query: 40 FNRSEAKDREIVARKLRDHVQG-----TDNNPLLI------FPEGTCVNNHY-TVMFKK- 86
E K ++ + L Q NP + +G +++ V K
Sbjct: 298 LTPDEVK--SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 87 -GAFELGCTVC-PVAIK--YNK--IFVD----------AFWNSRKQSFTMHLLQLMTSWA 130
E V P + +++ +F W +S M ++ + ++
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 131 VVCDVW-----------YLEPQTLRPGETAIEFAERVRDIISVRAGLKKV--------PW 171
+V + YLE + E A+ R I+ K
Sbjct: 416 LV-EKQPKESTISIPSIYLELKVKLENEYALH-----RSIVDHYNIPKTFDSDDLIPPYL 469
Query: 172 DGY----LKYSRPSPKHRERKQQSFAESVLRRL 200
D Y + + H + + ++ R +
Sbjct: 470 DQYFYSHIGH------HLKNIEHPERMTLFRMV 496
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.053
Identities = 21/129 (16%), Positives = 38/129 (29%), Gaps = 33/129 (25%)
Query: 60 QGTDNNPLLIFPEGTCVNNHYTVM---FKKGAFELGCTVCPVAIKYNKIFVDAF----WN 112
QG ++ F E + Y V+ K + E + + K+F W
Sbjct: 163 QGNTDDY---FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 113 SRKQ-------------SFTMH-LLQLMTSWAVVCDVWYLEPQTLRP---GETAIEFAER 155
S + ++QL + V + P LR G T
Sbjct: 220 ENPSNTPDKDYLLSIPISCPLIGVIQL-AHYVVTAKLLGFTPGELRSYLKGATG-----H 273
Query: 156 VRDIISVRA 164
+ +++ A
Sbjct: 274 SQGLVTAVA 282
>1h2e_A Phosphatase, YHFR; hydrolase, broad specificity phosphatase, DPGM
homolog; 1.69A {Bacillus stearothermophilus} SCOP:
c.60.1.1 PDB: 1h2f_A* 1ebb_A
Length = 207
Score = 27.2 bits (61), Expect = 3.7
Identities = 6/43 (13%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 120 MHLLQLMTSWAVVCDVWYLEPQTLRP--GETAIEFAERVRDII 160
++ + D ++ P P GE + +R + +
Sbjct: 91 KTHDEIRQMDPIAFDHFWQAPHLYAPQRGERFCDVQQRALEAV 133
>2i6h_A AGR_C_189P, hypothetical protein ATU0120; structural genomics,
APC5905, PSI-2; 1.75A {Agrobacterium tumefaciens str}
SCOP: a.118.8.5
Length = 207
Score = 26.6 bits (58), Expect = 4.7
Identities = 19/131 (14%), Positives = 31/131 (23%), Gaps = 12/131 (9%)
Query: 39 WFNRSEAKDREIVARKLRDHVQGTDN-------NPLLIFPEGTCVNNHYTVMFKKGA--F 89
WF++ A D R H ++ F+ A +
Sbjct: 46 WFDKDAAFDNHFHDRFRDAHFAAARRELDGWLEGAESSLALMLLLDQFPRNCFRGTAHMY 105
Query: 90 ELGCTVCPVAIKYNKIFVDAFWNSRKQSFTMHLLQLMTSWAVVCDVWYLEPQTLRPGETA 149
A + + D + + F A L G
Sbjct: 106 ATDPLARFFADEAIRRGHDQAVSEDLRVFFYLPFSHAEDIAAQQRACDLNQPL---GGLY 162
Query: 150 IEFAERVRDII 160
+ AE RDI+
Sbjct: 163 LHHAEEHRDIV 173
>2vqx_A Metalloproteinase; thermolysin-like structure, zinc, protease,
hydrolase, metalloprotease; 1.82A {Serratia
proteamaculans}
Length = 341
Score = 27.0 bits (59), Expect = 4.8
Identities = 11/61 (18%), Positives = 26/61 (42%)
Query: 76 VNNHYTVMFKKGAFELGCTVCPVAIKYNKIFVDAFWNSRKQSFTMHLLQLMTSWAVVCDV 135
+ + FK+ + + ++ Y K + +AFWN ++ F ++ + + DV
Sbjct: 100 TYDFFWQAFKRNSLDNQGLPLTGSVHYGKEYQNAFWNGQQMVFGDGDGEIFNRFTIAIDV 159
Query: 136 W 136
Sbjct: 160 V 160
>2ddb_A Pseudecin, channel blocker; crisp, snake venom, CNG channel, toxin;
1.90A {Pseudechis porphyriacus} PDB: 2epf_A 2dda_A
Length = 210
Score = 26.4 bits (58), Expect = 6.4
Identities = 7/34 (20%), Positives = 11/34 (32%), Gaps = 6/34 (17%)
Query: 70 FPEGTCVNN----HYTVMFKKGAFELGC--TVCP 97
+ G HYT + + +GC C
Sbjct: 93 YGIGAKPPGSVIGHYTQVVWYKSHLIGCASAKCS 126
>1v37_A Phosphoglycerate mutase; riken structu genomics/proteomics
initiative, RSGI, structural genomics,; 1.40A {Thermus
thermophilus} SCOP: c.60.1.1 PDB: 1v7q_A 2hia_A 2pa0_A
2p2y_A 2p77_A 2p6m_A 2p9y_A 2p30_A 2ekz_A 2p9f_A 2p79_A
2p78_A 2p2z_A 2p75_A 2owe_A 2enu_A 2ekb_A 2p6o_A 2owd_A
2enw_A ...
Length = 177
Score = 25.7 bits (57), Expect = 9.7
Identities = 9/27 (33%), Positives = 11/27 (40%), Gaps = 2/27 (7%)
Query: 136 WYLEPQTLRP--GETAIEFAERVRDII 160
L Q P GE+ F ERV +
Sbjct: 95 ALLRFQGFHPPGGESLSAFQERVFRFL 121
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.137 0.435
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,195,782
Number of extensions: 179842
Number of successful extensions: 372
Number of sequences better than 10.0: 1
Number of HSP's gapped: 371
Number of HSP's successfully gapped: 13
Length of query: 203
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 114
Effective length of database: 4,216,824
Effective search space: 480717936
Effective search space used: 480717936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.1 bits)