BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028834
(203 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 33.9 bits (76), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 50/102 (49%), Gaps = 18/102 (17%)
Query: 25 VVVFAHGAGAPSSSDWMIKWKDMLGKALDAVEVVTFDYPYIAGGKRKAPPKAEKLV--EF 82
++ +HGAG S ++++ L + L ++++ F + ++ G+ + E++V +F
Sbjct: 61 LIFVSHGAGEHSG-----RYEE-LARMLMGLDLLVFAHDHVGHGQSEG----ERMVVSDF 110
Query: 83 HTDV------VKGAVAKFPGHPLILAGKSMGSRVSCMVACKE 118
H V V +PG P+ L G SMG ++ + A +
Sbjct: 111 HVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAER 152
>pdb|3C5V|A Chain A, Pp2a-Specific Methylesterase Apo Form (Pme)
Length = 316
Score = 33.5 bits (75), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 13/125 (10%)
Query: 13 KNECGDDT-------SSSPVVVFAHGAGAPSSSDWMIKWKDMLGKALDAVEVVTFDYPYI 65
+NE G DT S PV++ HG G S+ W + ++ + +V D
Sbjct: 21 ENETGKDTFRVYKSGSEGPVLLLLHGGGH-SALSWAVFTAAIISRV--QCRIVALDLRSH 77
Query: 66 AGGKRKAPP--KAEKLVEFHTDVVKGAVAKFPGHPLILAGKSMGSRVSCMVACKEDIAAS 123
K K P AE + + +VV+ P P++L G SMG ++ A + +
Sbjct: 78 GETKVKNPEDLSAETMAKDVGNVVEAMYGDLP-PPIMLIGHSMGGAIAVHTASSNLVPSL 136
Query: 124 AVLCL 128
LC+
Sbjct: 137 LGLCM 141
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 33.5 bits (75), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 50/102 (49%), Gaps = 18/102 (17%)
Query: 25 VVVFAHGAGAPSSSDWMIKWKDMLGKALDAVEVVTFDYPYIAGGKRKAPPKAEKLV--EF 82
++ +HGAG S ++++ L + L ++++ F + ++ G+ + E++V +F
Sbjct: 44 LIFVSHGAGEHSG-----RYEE-LARMLMGLDLLVFAHDHVGHGQSEG----ERMVVSDF 93
Query: 83 HTDV------VKGAVAKFPGHPLILAGKSMGSRVSCMVACKE 118
H V V +PG P+ L G SMG ++ + A +
Sbjct: 94 HVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAER 135
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 33.5 bits (75), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 50/102 (49%), Gaps = 18/102 (17%)
Query: 25 VVVFAHGAGAPSSSDWMIKWKDMLGKALDAVEVVTFDYPYIAGGKRKAPPKAEKLV--EF 82
++ +HGAG S ++++ L + L ++++ F + ++ G+ + E++V +F
Sbjct: 62 LIFVSHGAGEHSG-----RYEE-LARMLMGLDLLVFAHDHVGHGQSEG----ERMVVSDF 111
Query: 83 HTDV------VKGAVAKFPGHPLILAGKSMGSRVSCMVACKE 118
H V V +PG P+ L G SMG ++ + A +
Sbjct: 112 HVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAER 153
>pdb|3C5W|P Chain P, Complex Between Pp2a-Specific Methylesterase Pme-1 And
Pp2a Core Enzyme
Length = 310
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 13/125 (10%)
Query: 13 KNECGDDT-------SSSPVVVFAHGAGAPSSSDWMIKWKDMLGKALDAVEVVTFDYPYI 65
+NE G DT S PV++ HG G S+ W + ++ + +V D
Sbjct: 25 ENETGKDTFRVYKSGSEGPVLLLLHGGGH-SALSWAVFTAAIISRV--QCRIVALDLRSH 81
Query: 66 AGGKRKAPP--KAEKLVEFHTDVVKGAVAKFPGHPLILAGKSMGSRVSCMVACKEDIAAS 123
K K P AE + + +VV+ P P++L G +MG ++ A + +
Sbjct: 82 GETKVKNPEDLSAETMAKDVGNVVEAMYGDLP-PPIMLIGHAMGGAIAVHTASSNLVPSL 140
Query: 124 AVLCL 128
LC+
Sbjct: 141 LGLCM 145
>pdb|2VJY|A Chain A, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|B Chain B, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|C Chain C, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|D Chain D, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VK4|A Chain A, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|B Chain B, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|C Chain C, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|D Chain D, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
Length = 563
Score = 30.0 bits (66), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 10/64 (15%)
Query: 48 LGKALDAVEVVTFDYPYIAGGKRKAPPKAEKLVEFHTDVVKGAVAKFPGHPLILAGKSMG 107
+G L +F Y Y K + +VEFH+D K A FPG + A + +
Sbjct: 285 VGALLSDFNTGSFSYSY----------KTKNIVEFHSDYTKIRSATFPGVQMKFALQKLL 334
Query: 108 SRVS 111
++V+
Sbjct: 335 TKVA 338
>pdb|1PVD|A Chain A, Crystal Structure Of The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase From The Yeast
Saccharomyces Cerevisiae At 2.3 Angstroms Resolution
pdb|1PVD|B Chain B, Crystal Structure Of The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase From The Yeast
Saccharomyces Cerevisiae At 2.3 Angstroms Resolution
Length = 555
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
Query: 48 LGKALDAVEVVTFDYPYIAGGKRKAPPKAEKLVEFHTDVVKGAVAKFPG 96
+G L +F Y Y K + +VEFH+D +K A FPG
Sbjct: 284 VGALLSDFNTGSFSYSY----------KTKNIVEFHSDHMKIRNATFPG 322
>pdb|1PYD|A Chain A, Catalytic Centers In The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase At 2.4 Angstroms
Resolution
pdb|1PYD|B Chain B, Catalytic Centers In The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase At 2.4 Angstroms
Resolution
Length = 556
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
Query: 48 LGKALDAVEVVTFDYPYIAGGKRKAPPKAEKLVEFHTDVVKGAVAKFPG 96
+G L +F Y Y K + +VEFH+D +K A FPG
Sbjct: 285 VGALLSDFNTGSFSYSY----------KTKNIVEFHSDHMKIRNATFPG 323
>pdb|2W93|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
pdb|2W93|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
pdb|2W93|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
pdb|2W93|D Chain D, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
Length = 563
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
Query: 48 LGKALDAVEVVTFDYPYIAGGKRKAPPKAEKLVEFHTDVVKGAVAKFPG 96
+G L +F Y Y K + +VEFH+D +K A FPG
Sbjct: 285 VGALLSDFNTGSFSYSY----------KTKNIVEFHSDHMKIRNATFPG 323
>pdb|2VK1|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
pdb|2VK1|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
pdb|2VK1|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
pdb|2VK1|D Chain D, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
Length = 563
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
Query: 48 LGKALDAVEVVTFDYPYIAGGKRKAPPKAEKLVEFHTDVVKGAVAKFPG 96
+G L +F Y Y K + +VEFH+D +K A FPG
Sbjct: 285 VGALLSDFNTGSFSYSY----------KTKNIVEFHSDHMKIRNATFPG 323
>pdb|1QPB|A Chain A, Pyruvate Decarboyxlase From Yeast (Form B) Complexed With
Pyruvamide
pdb|1QPB|B Chain B, Pyruvate Decarboyxlase From Yeast (Form B) Complexed With
Pyruvamide
Length = 563
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
Query: 48 LGKALDAVEVVTFDYPYIAGGKRKAPPKAEKLVEFHTDVVKGAVAKFPG 96
+G L +F Y Y K + +VEFH+D +K A FPG
Sbjct: 285 VGALLSDFNTGSFSYSY----------KTKNIVEFHSDHMKIRNATFPG 323
>pdb|2VK8|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
pdb|2VK8|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
pdb|2VK8|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
pdb|2VK8|D Chain D, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
Length = 563
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
Query: 48 LGKALDAVEVVTFDYPYIAGGKRKAPPKAEKLVEFHTDVVKGAVAKFPG 96
+G L +F Y Y K + +VEFH+D +K A FPG
Sbjct: 285 VGALLSDFNTGSFSYSY----------KTKNIVEFHSDHMKIRNATFPG 323
>pdb|1UFO|A Chain A, Crystal Structure Of Tt1662 From Thermus Thermophilus
pdb|1UFO|B Chain B, Crystal Structure Of Tt1662 From Thermus Thermophilus
pdb|1UFO|C Chain C, Crystal Structure Of Tt1662 From Thermus Thermophilus
pdb|1UFO|D Chain D, Crystal Structure Of Tt1662 From Thermus Thermophilus
pdb|1UFO|E Chain E, Crystal Structure Of Tt1662 From Thermus Thermophilus
pdb|1UFO|F Chain F, Crystal Structure Of Tt1662 From Thermus Thermophilus
Length = 238
Score = 26.6 bits (57), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 21/108 (19%)
Query: 49 GKALDAVEVVTFDYPYIAGGKRKAPPKAEKLVEFHTDVVKGAVA--------------KF 94
G A ++ FD P G+R+ PP + K + +V + A+ +F
Sbjct: 46 GYAERGFLLLAFDAPRH--GEREGPPPSSKSPRYVEEVYRVALGFKEEARRVAEEAERRF 103
Query: 95 PGHPLILAGKSMGSRVSCMVACKEDIAASAVLCL---GYPLKGMNGAV 139
G PL LAG S+G+ V+ ++ E VL G+P K G V
Sbjct: 104 -GLPLFLAGGSLGAFVAHLL-LAEGFRPRGVLAFIGSGFPXKLPQGQV 149
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,855,788
Number of Sequences: 62578
Number of extensions: 223773
Number of successful extensions: 493
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 491
Number of HSP's gapped (non-prelim): 14
length of query: 203
length of database: 14,973,337
effective HSP length: 94
effective length of query: 109
effective length of database: 9,091,005
effective search space: 990919545
effective search space used: 990919545
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)