BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028836
(203 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P70392|RGRF2_MOUSE Ras-specific guanine nucleotide-releasing factor 2 OS=Mus musculus
GN=Rasgrf2 PE=1 SV=2
Length = 1189
Score = 37.7 bits (86), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Query: 3 LEFECSNVNKWKEALASYEARVESLNKPNLISLDDYYRKELPSLIHQRNPNPHINTTE-L 61
+E E N+ + L + +E L K +++L+ + P +HQ +P I + +
Sbjct: 154 VETEKIATNQLRHQLEDQDTEIERL-KSEIVALNKTKERMRPYHVHQEEEDPDIKKIKKV 212
Query: 62 SKLVRWKLTRGKWRPRLLDFVSSLDDSSVKSASEKAFKSLPDLTKAVSELTVL 114
+R L R KW+ + D++ S S++ ++ F + T+ V +L +L
Sbjct: 213 QSFMRGWLCRRKWKTIVQDYICSPHAESMRKRNQIVFTMVEAETEYVHQLYIL 265
>sp|A2CEA7|RGRF2_DANRE Ras-specific guanine nucleotide-releasing factor 2 OS=Danio rerio
GN=rasgrf2 PE=3 SV=1
Length = 1244
Score = 35.0 bits (79), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Query: 3 LEFECSNVNKWKEALASYEARVESLNKPNLISLDDYYRKELPSLIHQRNPNPHINTTE-L 61
+E E N+ + L + +E L K +I+L+ + P + Q +P I + +
Sbjct: 150 VETEKVAANQLRTQLEDQDTEIERL-KAEIIALNKTKERMRPYHVFQEEEDPDIKKIKKV 208
Query: 62 SKLVRWKLTRGKWRPRLLDFVSSLDDSSVKSASEKAFKSLPDLTKAVSELTVL 114
+R L R KW+ + D++ S S++ ++ F + T+ V +L++L
Sbjct: 209 QSFMRGWLCRRKWKIIVQDYICSPHAESMRKRNQIVFNMVEAETEYVHQLSIL 261
>sp|Q99JE4|RGRF2_RAT Ras-specific guanine nucleotide-releasing factor 2 OS=Rattus
norvegicus GN=Rasgrf2 PE=1 SV=1
Length = 1190
Score = 34.7 bits (78), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 52/113 (46%), Gaps = 2/113 (1%)
Query: 3 LEFECSNVNKWKEALASYEARVESLNKPNLISLDDYYRKELPSLIHQRNPNPHINTTE-L 61
+E E N+ + L + +E L K +++L+ + P HQ +P I + +
Sbjct: 154 VETEKIAANQLRHQLEDQDTEIERL-KSEIVALNKTKERMRPYHTHQEEEDPDIKKIKKV 212
Query: 62 SKLVRWKLTRGKWRPRLLDFVSSLDDSSVKSASEKAFKSLPDLTKAVSELTVL 114
+R L R KW+ + D++ S S++ ++ F + ++ V +L +L
Sbjct: 213 QSFMRGWLCRRKWKTIVQDYICSPHAESMRKRNQIVFTMVEAESEYVHQLYIL 265
>sp|Q7USB0|RUVA_RHOBA Holliday junction ATP-dependent DNA helicase RuvA OS=Rhodopirellula
baltica (strain SH1) GN=ruvA PE=3 SV=1
Length = 207
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 26/113 (23%)
Query: 33 ISLDDYYRKELPSLIHQRNPNPHINTTELSKL--VRWKLTRGKWRPRLLDFVS------- 83
+ + DY R++L + I N L L + G+ PRL+ F +
Sbjct: 28 VYVGDYTRRQLQNQIG--------NEVRLHTLDYIEGNAQGGRLTPRLIGFSTLPERQFF 79
Query: 84 ----SLDDSSVKSASEKAFKSLPDLTKAVSE-----LTVLKGVGPATASAVLA 127
S+D VK A + + +L + E L+ L G+GPAT+ V+A
Sbjct: 80 DLFCSVDGVGVKKALRAMVRPVKELAVLIEEQDAKTLSALPGIGPATSEKVIA 132
>sp|O14827|RGRF2_HUMAN Ras-specific guanine nucleotide-releasing factor 2 OS=Homo sapiens
GN=RASGRF2 PE=1 SV=2
Length = 1237
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Query: 3 LEFECSNVNKWKEALASYEARVESLNKPNLISLDDYYRKELPSLIHQRNPNPHINTTE-L 61
+E E N+ + L + +E L K +I+L+ + P +Q + +P I + +
Sbjct: 154 VETEKIAANQLRHQLEDQDTEIERL-KSEIIALNKTKERMRPYQSNQEDEDPDIKKIKKV 212
Query: 62 SKLVRWKLTRGKWRPRLLDFVSSLDDSSVKSASEKAFKSLPDLTKAVSELTVL 114
+R L R KW+ + D++ S S++ ++ F + ++ V +L +L
Sbjct: 213 QSFMRGWLCRRKWKTIVQDYICSPHAESMRKRNQIVFTMVEAESEYVHQLYIL 265
>sp|Q64GL0|EVL_XENLA Ena/VASP-like protein OS=Xenopus laevis GN=evl PE=2 SV=1
Length = 692
Score = 32.0 bits (71), Expect = 2.6, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 26/55 (47%)
Query: 81 FVSSLDDSSVKSASEKAFKSLPDLTKAVSELTVLKGVGPATASAVLAAYAPGVAP 135
F SS S S F SLP AVSELT+ K P S+ + ++P + P
Sbjct: 407 FQSSTHPSQQSYQSMSHFVSLPPPYAAVSELTLPKRTTPYMTSSTITQFSPVLPP 461
>sp|A9WT69|UVRC_RENSM UvrABC system protein C OS=Renibacterium salmoninarum (strain ATCC
33209 / DSM 20767 / JCM 11484 / NBRC 15589 / NCIMB 2235)
GN=uvrC PE=3 SV=1
Length = 655
Score = 32.0 bits (71), Expect = 3.0, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 71 RGK-WRPRLLDFVSSLDDSSVKSASEKAFKSLPDLTKA-VSELTVLKGVGPATASAVLAA 128
RGK LLD V L +S K A K F S+ L A VS+++ +KG+GP A AV +A
Sbjct: 577 RGKSMTASLLDGVPGLGESKQK-ALLKHFGSVKKLQSADVSQISEVKGIGPVLAEAVRSA 635
>sp|A8LW31|UVRC_SALAI UvrABC system protein C OS=Salinispora arenicola (strain CNS-205)
GN=uvrC PE=3 SV=1
Length = 660
Score = 31.2 bits (69), Expect = 4.5, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 79 LDFVSSLDDSSVKSASEKAFKSLPDLTKA-VSELTVLKGVGPATASAVLAAYA 130
LD VS L + K A + F SL L A V E+T + G+G TA A+LAA A
Sbjct: 599 LDRVSGLGEVRRK-ALLRHFGSLKRLAAASVEEITEVPGIGKRTAEAILAALA 650
>sp|B0CEV0|Y4368_ACAM1 UPF0758 protein AM1_4368 OS=Acaryochloris marina (strain MBIC
11017) GN=AM1_4368 PE=3 SV=1
Length = 243
Score = 31.2 bits (69), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 109 SELTVLKGVGPATASAVLAAYAPG 132
SELT ++G+GPA A+ +LAA G
Sbjct: 77 SELTTIQGIGPAKATTILAAIELG 100
>sp|B0JTF4|Y4435_MICAN UPF0758 protein MAE_44350 OS=Microcystis aeruginosa (strain
NIES-843) GN=MAE_44350 PE=3 SV=1
Length = 243
Score = 31.2 bits (69), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 10/55 (18%)
Query: 109 SELTVLKGVGPATASAVLAAYAPGVAPFM----------SDEAMGAALGHSKDYS 153
ELT + G+GPA A+ +LAA G F S + A LGH Y
Sbjct: 77 QELTAIHGIGPAKATTILAAIELGKRAFQRRPTEKMVIDSPDTAAAILGHELMYQ 131
>sp|Q7MW36|RUVA_PORGI Holliday junction ATP-dependent DNA helicase RuvA OS=Porphyromonas
gingivalis (strain ATCC BAA-308 / W83) GN=ruvA PE=3 SV=1
Length = 202
Score = 30.8 bits (68), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 109 SELTVLKGVGPATASAVLAAYAP 131
+LT + GVGP TA +L++YAP
Sbjct: 72 GQLTSVSGVGPTTAQLILSSYAP 94
>sp|B2RJ07|RUVA_PORG3 Holliday junction ATP-dependent DNA helicase RuvA OS=Porphyromonas
gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257)
GN=ruvA PE=3 SV=1
Length = 202
Score = 30.4 bits (67), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 109 SELTVLKGVGPATASAVLAAYAP 131
+LT + GVGP TA +L++YAP
Sbjct: 72 GQLTSVSGVGPTTARLILSSYAP 94
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,124,093
Number of Sequences: 539616
Number of extensions: 2519821
Number of successful extensions: 8757
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 8751
Number of HSP's gapped (non-prelim): 22
length of query: 203
length of database: 191,569,459
effective HSP length: 112
effective length of query: 91
effective length of database: 131,132,467
effective search space: 11933054497
effective search space used: 11933054497
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)