Query 028836
Match_columns 203
No_of_seqs 110 out of 143
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 04:44:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028836.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028836hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n0u_A Probable N-glycosylase/ 97.7 0.00012 4.1E-09 62.1 8.3 71 103-174 123-201 (219)
2 3fhf_A Mjogg, N-glycosylase/DN 97.6 0.00037 1.3E-08 59.0 10.3 75 98-174 113-196 (214)
3 3fhg_A Mjogg, N-glycosylase/DN 97.6 0.00024 8.1E-09 59.2 8.8 71 103-174 111-189 (207)
4 3s6i_A DNA-3-methyladenine gly 96.4 0.0045 1.6E-07 52.3 5.9 32 104-135 134-167 (228)
5 2h56_A DNA-3-methyladenine gly 96.0 0.011 3.9E-07 49.8 6.2 37 105-142 134-172 (233)
6 4e9f_A Methyl-CPG-binding doma 95.8 0.0051 1.7E-07 49.8 2.9 72 57-131 44-126 (161)
7 3i0w_A 8-oxoguanine-DNA-glycos 95.7 0.0069 2.4E-07 52.8 3.7 39 103-143 205-245 (290)
8 4b21_A Probable DNA-3-methylad 95.5 0.0096 3.3E-07 50.5 4.0 38 104-142 145-184 (232)
9 2yg9_A DNA-3-methyladenine gly 95.5 0.023 7.9E-07 47.8 6.2 38 103-141 140-179 (225)
10 2xhi_A N-glycosylase/DNA lyase 95.5 0.084 2.9E-06 47.5 10.2 60 103-164 247-318 (360)
11 1mpg_A ALKA, 3-methyladenine D 95.4 0.026 8.9E-07 48.6 6.3 43 103-146 201-245 (282)
12 2jhn_A ALKA, 3-methyladenine D 94.9 0.03 1E-06 48.7 5.2 38 105-143 206-244 (295)
13 1pu6_A 3-methyladenine DNA gly 94.7 0.016 5.3E-07 48.5 2.9 27 104-130 116-142 (218)
14 1kg2_A A/G-specific adenine gl 94.3 0.021 7.2E-07 47.7 2.7 36 106-142 106-141 (225)
15 2abk_A Endonuclease III; DNA-r 94.3 0.038 1.3E-06 45.7 4.2 25 105-129 105-129 (211)
16 1kea_A Possible G-T mismatches 93.8 0.062 2.1E-06 44.8 4.6 25 106-130 112-136 (221)
17 1orn_A Endonuclease III; DNA r 93.8 0.055 1.9E-06 45.4 4.2 37 105-143 109-147 (226)
18 1s5l_U Photosystem II 12 kDa e 92.2 0.044 1.5E-06 43.8 1.3 38 105-147 59-96 (134)
19 3fsp_A A/G-specific adenine gl 92.1 0.12 4E-06 45.9 4.1 26 105-130 114-139 (369)
20 3arc_U Photosystem II 12 kDa e 91.9 0.056 1.9E-06 40.6 1.6 38 105-147 22-59 (97)
21 3n5n_X A/G-specific adenine DN 91.6 0.17 5.8E-06 44.4 4.5 36 107-143 126-162 (287)
22 2duy_A Competence protein come 90.7 0.16 5.6E-06 35.1 2.9 36 107-147 25-60 (75)
23 2i5h_A Hypothetical protein AF 89.3 0.068 2.3E-06 45.4 -0.1 63 78-147 106-169 (205)
24 1x2i_A HEF helicase/nuclease; 88.1 0.32 1.1E-05 32.8 2.7 23 108-130 45-67 (75)
25 2a1j_B DNA excision repair pro 88.0 0.82 2.8E-05 32.7 5.0 42 83-129 11-52 (91)
26 1kft_A UVRC, excinuclease ABC 85.9 0.57 1.9E-05 32.5 3.1 22 108-129 55-76 (78)
27 2edu_A Kinesin-like protein KI 85.8 0.27 9.3E-06 35.9 1.4 39 108-147 39-77 (98)
28 2ztd_A Holliday junction ATP-d 85.3 0.44 1.5E-05 40.2 2.6 26 106-131 85-110 (212)
29 1ixr_A Holliday junction DNA h 83.5 0.59 2E-05 38.6 2.6 26 106-131 69-94 (191)
30 3u5c_S 40S ribosomal protein S 81.2 1 3.6E-05 36.1 3.2 50 105-154 26-81 (146)
31 1cuk_A RUVA protein; DNA repai 80.9 0.82 2.8E-05 38.0 2.5 27 105-131 69-95 (203)
32 1z00_A DNA excision repair pro 79.0 1.5 5E-05 31.1 3.1 24 106-129 16-39 (89)
33 1x2i_A HEF helicase/nuclease; 78.6 1.8 6.2E-05 28.9 3.3 24 106-129 11-34 (75)
34 2a1j_A DNA repair endonuclease 78.6 0.69 2.4E-05 31.5 1.1 40 108-147 3-43 (63)
35 1z00_A DNA excision repair pro 78.5 1.3 4.6E-05 31.3 2.7 24 107-130 49-72 (89)
36 2a1j_B DNA excision repair pro 77.4 1.4 4.7E-05 31.5 2.5 23 108-130 63-85 (91)
37 3r8n_M 30S ribosomal protein S 76.6 2 7E-05 33.0 3.4 39 105-143 12-53 (114)
38 1kft_A UVRC, excinuclease ABC 74.7 1.3 4.4E-05 30.7 1.7 20 110-129 25-44 (78)
39 3vdp_A Recombination protein R 73.6 1.7 5.8E-05 36.9 2.4 22 104-125 21-42 (212)
40 3j20_O 30S ribosomal protein S 70.2 4.3 0.00015 32.6 4.0 39 105-143 19-60 (148)
41 2bcq_A DNA polymerase lambda; 69.6 1.6 5.3E-05 38.7 1.4 21 108-128 56-76 (335)
42 2xzm_M RPS18E; ribosome, trans 69.1 4.8 0.00016 32.5 4.1 40 104-143 25-67 (155)
43 2fmp_A DNA polymerase beta; nu 68.6 1.7 6E-05 38.4 1.5 33 98-130 46-78 (335)
44 1z00_B DNA repair endonuclease 67.7 3.8 0.00013 29.5 2.9 42 106-147 15-57 (84)
45 3iz6_M 40S ribosomal protein S 66.5 3.9 0.00013 32.9 3.1 52 103-154 22-79 (152)
46 1vdd_A Recombination protein R 66.3 3 0.0001 35.8 2.4 22 104-125 7-28 (228)
47 2fmp_A DNA polymerase beta; nu 65.7 3.6 0.00012 36.3 3.0 63 105-172 94-170 (335)
48 2w9m_A Polymerase X; SAXS, DNA 64.7 3.5 0.00012 38.8 2.8 24 105-128 93-116 (578)
49 2vqe_M 30S ribosomal protein S 64.2 3.3 0.00011 32.4 2.1 40 105-144 13-55 (126)
50 2ihm_A POL MU, DNA polymerase 63.3 4.2 0.00014 36.3 2.9 26 103-128 96-121 (360)
51 3bqs_A Uncharacterized protein 60.9 12 0.00042 27.4 4.6 21 109-129 4-24 (93)
52 3b0x_A DNA polymerase beta fam 60.5 4.7 0.00016 37.8 2.8 24 105-128 89-112 (575)
53 1vq8_Y 50S ribosomal protein L 59.9 1.9 6.4E-05 36.9 0.0 21 108-128 14-34 (241)
54 1jms_A Terminal deoxynucleotid 58.6 5.6 0.00019 35.9 2.9 26 103-128 115-140 (381)
55 3mab_A Uncharacterized protein 57.3 2.6 8.9E-05 31.2 0.4 59 107-165 2-63 (93)
56 2ztd_A Holliday junction ATP-d 57.0 20 0.00067 30.0 5.8 55 108-164 122-188 (212)
57 2ihm_A POL MU, DNA polymerase 56.4 2.6 8.9E-05 37.7 0.3 33 98-130 50-82 (360)
58 2bcq_A DNA polymerase lambda; 55.8 5.6 0.00019 35.1 2.4 61 107-172 94-167 (335)
59 1wcn_A Transcription elongatio 55.6 0.99 3.4E-05 31.5 -2.1 52 87-140 17-69 (70)
60 2kp7_A Crossover junction endo 51.2 5.3 0.00018 29.0 1.2 29 98-126 47-75 (87)
61 2bgw_A XPF endonuclease; hydro 49.3 12 0.0004 30.4 3.2 23 108-130 161-183 (219)
62 1jms_A Terminal deoxynucleotid 48.2 4.3 0.00015 36.6 0.3 33 98-130 69-101 (381)
63 1ci4_A Protein (barrier-TO-aut 47.5 7.1 0.00024 29.0 1.4 20 110-129 19-38 (89)
64 2nrt_A Uvrabc system protein C 43.0 12 0.00041 31.6 2.3 21 109-129 168-188 (220)
65 3oao_A Uncharacterized protein 42.1 21 0.0007 28.3 3.4 62 54-120 78-143 (147)
66 1ixr_A Holliday junction DNA h 40.2 15 0.0005 30.1 2.4 56 107-164 105-170 (191)
67 4gfj_A Topoisomerase V; helix- 39.6 14 0.00048 35.2 2.4 22 108-129 467-488 (685)
68 1cuk_A RUVA protein; DNA repai 38.5 16 0.00055 30.1 2.4 22 107-128 106-127 (203)
69 3bbn_M Ribosomal protein S13; 34.7 6.8 0.00023 31.4 -0.5 42 102-143 55-98 (145)
70 2w9m_A Polymerase X; SAXS, DNA 34.5 16 0.00053 34.4 1.9 42 87-128 107-150 (578)
71 3sgi_A DNA ligase; HET: DNA AM 34.2 8.5 0.00029 37.2 0.0 14 55-68 487-500 (615)
72 3c65_A Uvrabc system protein C 33.9 8.6 0.0003 32.6 0.0 21 109-129 173-193 (226)
73 3psf_A Transcription elongatio 33.7 32 0.0011 35.1 4.1 22 108-129 716-737 (1030)
74 1b22_A DNA repair protein RAD5 33.4 21 0.00071 27.0 2.1 44 86-129 34-78 (114)
75 2bgw_A XPF endonuclease; hydro 33.3 23 0.0008 28.5 2.5 23 107-129 192-214 (219)
76 1exn_A 5'-exonuclease, 5'-nucl 31.7 19 0.00064 31.4 1.8 16 114-129 208-223 (290)
77 1vq8_Y 50S ribosomal protein L 31.3 10 0.00035 32.3 0.0 33 97-129 35-68 (241)
78 3psi_A Transcription elongatio 28.4 36 0.0012 35.4 3.4 22 108-129 713-734 (1219)
79 1qpz_A PURA, protein (purine n 25.4 88 0.003 25.6 4.8 45 108-176 3-47 (340)
80 3c1y_A DNA integrity scanning 25.2 30 0.001 31.5 2.0 42 85-127 323-365 (377)
81 3o18_A C-phycocyanin alpha sub 24.7 41 0.0014 26.8 2.5 51 53-104 16-66 (162)
82 4glx_A DNA ligase; inhibitor, 24.3 46 0.0016 31.8 3.2 22 107-128 542-563 (586)
83 3bzc_A TEX; helix-turn-helix, 23.5 23 0.00079 35.1 0.9 33 107-140 506-538 (785)
84 2fsu_A Protein PHNH; C-P lyase 23.0 61 0.0021 27.2 3.3 22 115-137 58-79 (210)
85 2ziu_A MUS81 protein; helix-ha 22.7 46 0.0016 28.3 2.6 23 107-129 235-257 (311)
86 3c65_A Uvrabc system protein C 22.5 18 0.00062 30.6 0.0 24 105-129 201-224 (226)
87 3q8k_A Flap endonuclease 1; he 22.1 35 0.0012 30.0 1.8 17 113-129 236-252 (341)
88 1pc6_A Protein NINB; structura 21.7 78 0.0027 24.7 3.6 28 148-175 100-127 (146)
89 3b0x_A DNA polymerase beta fam 20.8 32 0.0011 32.1 1.2 26 102-127 119-146 (575)
90 1rxw_A Flap structure-specific 20.1 43 0.0015 29.0 1.9 17 113-129 239-255 (336)
No 1
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=97.69 E-value=0.00012 Score=62.10 Aligned_cols=71 Identities=23% Similarity=0.219 Sum_probs=54.5
Q ss_pred cHHHHHHHhh-cccCcChHHHHHHHhh-hCCCCCCcccHHHHHhh--cC----CCCCCCHHHHHHHHHHHHHHHHhcCcc
Q 028836 103 DLTKAVSELT-VLKGVGPATASAVLAA-YAPGVAPFMSDEAMGAA--LG----HSKDYSLRQYLLFADKLQAKAKVSDIF 174 (203)
Q Consensus 103 dv~~Al~~Lt-~LkGVGPATASaiLa~-~~P~~~pFfSDEa~~~~--~g----~~ikYt~keY~~~~~~l~~~a~el~~~ 174 (203)
++..+.+.|+ +|+||||-||++||.. ..++.+| .++-+...+ .| .+..-|-+.|.++-+.+++.|+++|.+
T Consensus 123 ~~~~~r~~L~~~l~GVG~kTA~~vL~~~g~~~~~~-VDthv~Ri~~rlg~~~~~~k~~t~k~y~~ie~~~~~~a~~~g~~ 201 (219)
T 3n0u_A 123 DPFQSREFLVRNAKGIGWKEASHFLRNTGVEDLAI-LDKHVLRLMKRHGLIQEIPKGWSKKRYLYVEEILRKVAEAFGES 201 (219)
T ss_dssp CHHHHHHHHHHHSTTCCHHHHHHHHHTTTCCSCCC-CCHHHHHHHHHTTSCSSCCSSCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CcHHHHHHHHHhCCCCCHHHHHHHHHHcCCCCeee-ecHHHHHHHHHcCCCCcCcCcCCHHHHHHHHHHHHHHHHHHCCC
Confidence 6778999999 9999999999999975 4433333 344444422 13 345778999999999999999999988
No 2
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=97.62 E-value=0.00037 Score=58.95 Aligned_cols=75 Identities=23% Similarity=0.221 Sum_probs=57.3
Q ss_pred HhhCccHHHHHHHhh-cccCcChHHHHHHHhhhCCCCCCcc-cHHHHHhhc---C----CCCCCCHHHHHHHHHHHHHHH
Q 028836 98 FKSLPDLTKAVSELT-VLKGVGPATASAVLAAYAPGVAPFM-SDEAMGAAL---G----HSKDYSLRQYLLFADKLQAKA 168 (203)
Q Consensus 98 f~~l~dv~~Al~~Lt-~LkGVGPATASaiLa~~~P~~~pFf-SDEa~~~~~---g----~~ikYt~keY~~~~~~l~~~a 168 (203)
|..+.++..+.+.|. +||||||-||++||.... ..+|+ -|--..-++ | .+...|.+.|.++-..+++.+
T Consensus 113 ~~~~~~~~~~re~Ll~~LpGVG~KTA~~vL~~~g--~~~~~vVDthv~Ri~~RlG~~~~~~k~lt~~~y~e~~~~l~~~g 190 (214)
T 3fhf_A 113 VESFENEKVAREFLVRNIKGIGYKEASHFLRNVG--YDDVAIIDRHILRELYENNYIDEIPKTLSRRKYLEIENILRDIG 190 (214)
T ss_dssp HHHSSSHHHHHHHHHHHSTTCCHHHHHHHHHHTT--CCSCCCCCHHHHHHHHHTTSSSSCCSSCCHHHHHHHHHHHHHHH
T ss_pred hcccCCcHHHHHHHHHhCCCCCHHHHHHHHHHcC--CCCcccCcHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 444457888999999 999999999999998642 23555 566443222 3 245678999999999999999
Q ss_pred HhcCcc
Q 028836 169 KVSDIF 174 (203)
Q Consensus 169 ~el~~~ 174 (203)
++.|..
T Consensus 191 ~~~g~~ 196 (214)
T 3fhf_A 191 EEVNLK 196 (214)
T ss_dssp HHTTCC
T ss_pred HHHCCC
Confidence 999988
No 3
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=97.60 E-value=0.00024 Score=59.16 Aligned_cols=71 Identities=23% Similarity=0.263 Sum_probs=53.1
Q ss_pred cHHHHHHHhhcccCcChHHHHHHHhh-hCCCCCCcccHHHHHhh--cC---C--CCCCCHHHHHHHHHHHHHHHHhcCcc
Q 028836 103 DLTKAVSELTVLKGVGPATASAVLAA-YAPGVAPFMSDEAMGAA--LG---H--SKDYSLRQYLLFADKLQAKAKVSDIF 174 (203)
Q Consensus 103 dv~~Al~~Lt~LkGVGPATASaiLa~-~~P~~~pFfSDEa~~~~--~g---~--~ikYt~keY~~~~~~l~~~a~el~~~ 174 (203)
+...+.+.|++||||||-||++||.. ..++. +...+-+...+ .| . +..-|.++|.++...++..++..|..
T Consensus 111 ~~~~~~~~L~~lpGIG~kTA~~il~~~~~~~~-~~vD~~v~Ri~~rlg~~~~~~~k~~~~k~y~~~~~~l~~~~~~~~~~ 189 (207)
T 3fhg_A 111 DQQLARERLLNIKGIGMQEASHFLRNVGYFDL-AIIDRHIIDFMRRIGAIGETNVKQLSKSLYISFENILKSIASNLNMS 189 (207)
T ss_dssp CHHHHHHHHTTSTTCCHHHHHHHHHHTTCCSS-CCCCHHHHHHHHHTTSSCCCCCSCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHcCCCcCHHHHHHHHHHhCCCCc-ceecHHHHHHHHHcCCCCccccccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 44578999999999999999999995 55432 22333343322 13 1 35679999999999999999999887
No 4
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=96.42 E-value=0.0045 Score=52.28 Aligned_cols=32 Identities=28% Similarity=0.375 Sum_probs=26.9
Q ss_pred HHHHHHHhhcccCcChHHHHHHHhh--hCCCCCC
Q 028836 104 LTKAVSELTVLKGVGPATASAVLAA--YAPGVAP 135 (203)
Q Consensus 104 v~~Al~~Lt~LkGVGPATASaiLa~--~~P~~~p 135 (203)
...+++.|++|+||||-||.+||.. ..|+.+|
T Consensus 134 ~~e~~~~L~~l~GIG~~TA~~ill~~lg~pd~fp 167 (228)
T 3s6i_A 134 NEELIERLTQIKGIGRWTVEMLLIFSLNRDDVMP 167 (228)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHHTSCCSSCCC
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCEEe
Confidence 4668999999999999999999976 4676656
No 5
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=96.00 E-value=0.011 Score=49.84 Aligned_cols=37 Identities=27% Similarity=0.366 Sum_probs=28.9
Q ss_pred HHHHHHhhcccCcChHHHHHHHhh--hCCCCCCcccHHHH
Q 028836 105 TKAVSELTVLKGVGPATASAVLAA--YAPGVAPFMSDEAM 142 (203)
Q Consensus 105 ~~Al~~Lt~LkGVGPATASaiLa~--~~P~~~pFfSDEa~ 142 (203)
..+++.|++|+||||-||++||.. ..|+.+| ..|=..
T Consensus 134 ~~~~~~L~~lpGIG~kTA~~ill~alg~pd~~p-vdd~~~ 172 (233)
T 2h56_A 134 TTVIEKLTAIKGIGQWTAEMFMMFSLGRLDVLS-VGDVGL 172 (233)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHHHHTTCCSCCCC-TTCHHH
T ss_pred HHHHHHHHhCCCcCHHHHHHHHHHhCCCCCeee-CchHHH
Confidence 478999999999999999999986 4666655 344443
No 6
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=95.75 E-value=0.0051 Score=49.82 Aligned_cols=72 Identities=15% Similarity=0.077 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHhhCCCCCcchhhhhhhCCHHHHHHHHHH-HH------hhCc----cHHHHHHHhhcccCcChHHHHHH
Q 028836 57 NTTELSKLVRWKLTRGKWRPRLLDFVSSLDDSSVKSASEK-AF------KSLP----DLTKAVSELTVLKGVGPATASAV 125 (203)
Q Consensus 57 tkdEL~~LveWKL~rGkfRP~L~~lV~sN~~~~V~~~t~~-Af------~~l~----dv~~Al~~Lt~LkGVGPATASai 125 (203)
|+++-+.-+-.+|-. .-|+...+.+.+ ++.|++..+- +| .+.. .+....+.|.+|+||||-||.++
T Consensus 44 T~~~~v~~~~~~l~~--~~pt~~~la~a~-~~el~~~i~~lG~y~~KAk~i~~~a~~~vp~~~~~L~~LpGVG~yTAdav 120 (161)
T 4e9f_A 44 TSGKMAIPVLWKFLE--KYPSAEVARTAD-WRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHGIGKYGNDSY 120 (161)
T ss_dssp SCHHHHHHHHHHHHH--HSCSHHHHTTSC-HHHHHHHHGGGSCHHHHHHHHHHHHHHHHHSCCSSGGGSTTCCHHHHHHH
T ss_pred CcHHHHHHHHHHHHH--HCCCHHHHhccC-hHhHHhHhhhcCCHHHHHHHHHHHhCCcCCCChhhhhcCCCchHHHHHHH
Confidence 567766666666653 247877776655 4455554331 11 1100 13334667999999999999999
Q ss_pred HhhhCC
Q 028836 126 LAAYAP 131 (203)
Q Consensus 126 La~~~P 131 (203)
+++..-
T Consensus 121 ~~F~~~ 126 (161)
T 4e9f_A 121 RIFCVN 126 (161)
T ss_dssp HHHTSS
T ss_pred HHHHCC
Confidence 998643
No 7
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=95.68 E-value=0.0069 Score=52.82 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=32.3
Q ss_pred cHHHHHHHhhcccCcChHHHHHHHhh--hCCCCCCcccHHHHH
Q 028836 103 DLTKAVSELTVLKGVGPATASAVLAA--YAPGVAPFMSDEAMG 143 (203)
Q Consensus 103 dv~~Al~~Lt~LkGVGPATASaiLa~--~~P~~~pFfSDEa~~ 143 (203)
+...+.+.|++||||||-||..||.. ..|+.+|. |-...
T Consensus 205 ~~~~~~~~L~~lpGIG~~TA~~ill~~lg~pd~fpv--D~~v~ 245 (290)
T 3i0w_A 205 NDNECHEELKKFMGVGPQVADCIMLFSMQKYSAFPV--DTWVK 245 (290)
T ss_dssp CHHHHHHHHTTSTTCCHHHHHHHHHHHHCCTTCCCC--CHHHH
T ss_pred CHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCccee--cHHHH
Confidence 46789999999999999999999965 57888885 65544
No 8
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=95.54 E-value=0.0096 Score=50.53 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=29.4
Q ss_pred HHHHHHHhhcccCcChHHHHHHHhh--hCCCCCCcccHHHH
Q 028836 104 LTKAVSELTVLKGVGPATASAVLAA--YAPGVAPFMSDEAM 142 (203)
Q Consensus 104 v~~Al~~Lt~LkGVGPATASaiLa~--~~P~~~pFfSDEa~ 142 (203)
...+++.|++||||||-||.+||.. ..|+.+| ..|-..
T Consensus 145 ~~~~~~~L~~l~GIG~~TA~~ill~alg~pd~fp-v~D~~v 184 (232)
T 4b21_A 145 EEELMESLSKIKGVKRWTIEMYSIFTLGRLDIMP-ADDSTL 184 (232)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHHTSCCSSCCC-TTCHHH
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCeee-CccHHH
Confidence 3468999999999999999999987 4576656 334443
No 9
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=95.53 E-value=0.023 Score=47.77 Aligned_cols=38 Identities=32% Similarity=0.295 Sum_probs=29.4
Q ss_pred cHHHHHHHhhcccCcChHHHHHHHhh--hCCCCCCcccHHH
Q 028836 103 DLTKAVSELTVLKGVGPATASAVLAA--YAPGVAPFMSDEA 141 (203)
Q Consensus 103 dv~~Al~~Lt~LkGVGPATASaiLa~--~~P~~~pFfSDEa 141 (203)
+...+++.|++||||||-||.+||.. ..|+.+| ..|-.
T Consensus 140 ~~~e~~~~L~~l~GIG~~TA~~ill~~lg~~d~fp-v~D~~ 179 (225)
T 2yg9_A 140 PDELVIAELVQLPGIGRWTAEMFLLFALARPDVFS-SGDLA 179 (225)
T ss_dssp CHHHHHHHHHTSTTCCHHHHHHHHHHTSCCSCCCC-TTCHH
T ss_pred CHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCeee-CccHH
Confidence 45678999999999999999999987 4566655 33443
No 10
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=95.51 E-value=0.084 Score=47.48 Aligned_cols=60 Identities=18% Similarity=0.218 Sum_probs=40.1
Q ss_pred cHHHHHHHhhcccCcChHHHHHHHhh--hCCCCCCcccHH-HHH---hhcCC--C----CCCCHHHHHHHHHHH
Q 028836 103 DLTKAVSELTVLKGVGPATASAVLAA--YAPGVAPFMSDE-AMG---AALGH--S----KDYSLRQYLLFADKL 164 (203)
Q Consensus 103 dv~~Al~~Lt~LkGVGPATASaiLa~--~~P~~~pFfSDE-a~~---~~~g~--~----ikYt~keY~~~~~~l 164 (203)
+...+++.|++|+||||-||.+||.. ..|+.+|. |- +.. ...|- . ...+.+.|..+.+.+
T Consensus 247 ~~~~~~~~L~~LpGIGp~TA~~ill~alg~pd~fpv--DthV~Ri~~r~~gl~~~~~~~k~~~~~~~~~l~~~~ 318 (360)
T 2xhi_A 247 SYEEAHKALCILPGVGTCVADKICLMALDKPQAVPV--NVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFF 318 (360)
T ss_dssp CHHHHHHHHTTSTTCCHHHHHHHHHHHSCCTTCCCC--SHHHHHHHHHHHCCCCSSCSCSSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCEEEe--cHHHHHHHHHHhCcccccccccCCChHHHHHHHHHH
Confidence 35589999999999999999999986 57777774 52 222 12241 1 123457777765555
No 11
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=95.40 E-value=0.026 Score=48.62 Aligned_cols=43 Identities=23% Similarity=0.237 Sum_probs=32.9
Q ss_pred cHHHHHHHhhcccCcChHHHHHHHhh--hCCCCCCcccHHHHHhhc
Q 028836 103 DLTKAVSELTVLKGVGPATASAVLAA--YAPGVAPFMSDEAMGAAL 146 (203)
Q Consensus 103 dv~~Al~~Lt~LkGVGPATASaiLa~--~~P~~~pFfSDEa~~~~~ 146 (203)
+...+++.|++|+||||-||.+||.. ..|+.+| ..|-.+....
T Consensus 201 ~~~~~~~~L~~lpGIG~~TA~~ill~~lg~~d~~p-vdd~~~r~~l 245 (282)
T 1mpg_A 201 DVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFL-PDDYLIKQRF 245 (282)
T ss_dssp CHHHHHHHHTTSTTCCHHHHHHHHHHHSCCSSCCC-TTCHHHHHHS
T ss_pred CHHHHHHHHhcCCCcCHHHHHHHHHHhCCCCCcCc-cccHHHHHHh
Confidence 67789999999999999999999986 4566544 4555555444
No 12
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=94.90 E-value=0.03 Score=48.67 Aligned_cols=38 Identities=34% Similarity=0.403 Sum_probs=29.1
Q ss_pred HHHHHHhhcccCcChHHHHHHHhh-hCCCCCCcccHHHHH
Q 028836 105 TKAVSELTVLKGVGPATASAVLAA-YAPGVAPFMSDEAMG 143 (203)
Q Consensus 105 ~~Al~~Lt~LkGVGPATASaiLa~-~~P~~~pFfSDEa~~ 143 (203)
..+.+.|++|+||||-||.+||.. +.|+.+| ..|=.+.
T Consensus 206 ~e~~~~L~~lpGIG~~TA~~ill~~lg~d~fp-vdD~~~r 244 (295)
T 2jhn_A 206 EEAYEYLTSFKGIGRWTAELVLSIALGKNVFP-ADDLGVR 244 (295)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHHHHTTCCCCCC-TTCHHHH
T ss_pred HHHHHHHhcCCCcCHHHHHHHHHHccCCCccc-chHHHHH
Confidence 678999999999999999999986 2376655 3444443
No 13
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=94.74 E-value=0.016 Score=48.53 Aligned_cols=27 Identities=26% Similarity=0.233 Sum_probs=23.2
Q ss_pred HHHHHHHhhcccCcChHHHHHHHhhhC
Q 028836 104 LTKAVSELTVLKGVGPATASAVLAAYA 130 (203)
Q Consensus 104 v~~Al~~Lt~LkGVGPATASaiLa~~~ 130 (203)
...+.+.|++||||||-||++||....
T Consensus 116 ~~~~~~~L~~lpGIG~kTA~~il~~a~ 142 (218)
T 1pu6_A 116 QEVTREWLLDQKGIGKESADAILCYAC 142 (218)
T ss_dssp HHCCHHHHHTSTTCCHHHHHHHHHHTT
T ss_pred chHHHHHHHcCCCcCHHHHHHHHHHHC
Confidence 455788899999999999999999743
No 14
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=94.32 E-value=0.021 Score=47.72 Aligned_cols=36 Identities=28% Similarity=0.310 Sum_probs=26.3
Q ss_pred HHHHHhhcccCcChHHHHHHHhhhCCCCCCcccHHHH
Q 028836 106 KAVSELTVLKGVGPATASAVLAAYAPGVAPFMSDEAM 142 (203)
Q Consensus 106 ~Al~~Lt~LkGVGPATASaiLa~~~P~~~pFfSDEa~ 142 (203)
.+++.|.+|+||||-||.+||....-.. -|..|--.
T Consensus 106 ~~~~~L~~lpGIG~~TA~~il~~a~~~~-~~~vD~~v 141 (225)
T 1kg2_A 106 ETFEEVAALPGVGRSTAGAILSLSLGKH-FPILDGNV 141 (225)
T ss_dssp CSHHHHHTSTTCCHHHHHHHHHHHHCCS-CCCCCHHH
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHhCCCC-cceeCHHH
Confidence 4688999999999999999998743221 23466544
No 15
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=94.28 E-value=0.038 Score=45.65 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=21.9
Q ss_pred HHHHHHhhcccCcChHHHHHHHhhh
Q 028836 105 TKAVSELTVLKGVGPATASAVLAAY 129 (203)
Q Consensus 105 ~~Al~~Lt~LkGVGPATASaiLa~~ 129 (203)
..+++.|++|+||||-||++||...
T Consensus 105 ~~~~~~L~~l~GIG~~tA~~il~~~ 129 (211)
T 2abk_A 105 PEDRAALEALPGVGRKTANVVLNTA 129 (211)
T ss_dssp CSCHHHHHHSTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHhCCCCChHHHHHHHHHH
Confidence 3467889999999999999999974
No 16
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=93.80 E-value=0.062 Score=44.81 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=21.9
Q ss_pred HHHHHhhcccCcChHHHHHHHhhhC
Q 028836 106 KAVSELTVLKGVGPATASAVLAAYA 130 (203)
Q Consensus 106 ~Al~~Lt~LkGVGPATASaiLa~~~ 130 (203)
.+++.|.+|+||||-||++||....
T Consensus 112 ~~~~~L~~lpGIG~~TA~~il~~~~ 136 (221)
T 1kea_A 112 RNRKAILDLPGVGKYTCAAVMCLAF 136 (221)
T ss_dssp SCHHHHHTSTTCCHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHhc
Confidence 4578899999999999999999753
No 17
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=93.77 E-value=0.055 Score=45.41 Aligned_cols=37 Identities=27% Similarity=0.380 Sum_probs=26.8
Q ss_pred HHHHHHhhcccCcChHHHHHHHhhh--CCCCCCcccHHHHH
Q 028836 105 TKAVSELTVLKGVGPATASAVLAAY--APGVAPFMSDEAMG 143 (203)
Q Consensus 105 ~~Al~~Lt~LkGVGPATASaiLa~~--~P~~~pFfSDEa~~ 143 (203)
..+++.|++|+||||-||.+||... .| .+| ..+-+..
T Consensus 109 p~~~~~L~~lpGIG~~TA~~il~~a~g~~-~~~-vD~~v~R 147 (226)
T 1orn_A 109 PRDRDELMKLPGVGRKTANVVVSVAFGVP-AIA-VDTHVER 147 (226)
T ss_dssp CSCHHHHTTSTTCCHHHHHHHHHHHHCCC-CCC-CCHHHHH
T ss_pred HHHHHHHHHCCCccHHHHHHHHHHHCCCc-eee-eCHHHHH
Confidence 3467899999999999999999873 44 333 4444433
No 18
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=92.23 E-value=0.044 Score=43.76 Aligned_cols=38 Identities=21% Similarity=0.336 Sum_probs=31.3
Q ss_pred HHHHHHhhcccCcChHHHHHHHhhhCCCCCCcccHHHHHhhcC
Q 028836 105 TKAVSELTVLKGVGPATASAVLAAYAPGVAPFMSDEAMGAALG 147 (203)
Q Consensus 105 ~~Al~~Lt~LkGVGPATASaiLa~~~P~~~pFfSDEa~~~~~g 147 (203)
.+..+.|++|+||||++|.+|.+ ..||-|=|=...+.|
T Consensus 59 tA~~~eL~~LpGiGp~~A~~II~-----~GpF~svedL~~V~G 96 (134)
T 1s5l_U 59 NTNIAAFIQYRGLYPTLAKLIVK-----NAPYESVEDVLNIPG 96 (134)
T ss_dssp TSCGGGGGGSTTCTHHHHHHHHH-----TCCCSSGGGGGGCTT
T ss_pred ccCHHHHHHCCCCCHHHHHHHHH-----cCCCCCHHHHHhCCC
Confidence 34577899999999999999993 558888887777776
No 19
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=92.12 E-value=0.12 Score=45.92 Aligned_cols=26 Identities=42% Similarity=0.534 Sum_probs=22.6
Q ss_pred HHHHHHhhcccCcChHHHHHHHhhhC
Q 028836 105 TKAVSELTVLKGVGPATASAVLAAYA 130 (203)
Q Consensus 105 ~~Al~~Lt~LkGVGPATASaiLa~~~ 130 (203)
..+++.|.+|+||||-||.+||+...
T Consensus 114 p~~~~~L~~l~GIG~~tA~~il~~~~ 139 (369)
T 3fsp_A 114 PDDPDEFSRLKGVGPYTVGAVLSLAY 139 (369)
T ss_dssp CCSHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred hhHHHHHhcCCCcCHHHHHHHHHHHC
Confidence 34688899999999999999999854
No 20
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=91.95 E-value=0.056 Score=40.58 Aligned_cols=38 Identities=21% Similarity=0.336 Sum_probs=31.3
Q ss_pred HHHHHHhhcccCcChHHHHHHHhhhCCCCCCcccHHHHHhhcC
Q 028836 105 TKAVSELTVLKGVGPATASAVLAAYAPGVAPFMSDEAMGAALG 147 (203)
Q Consensus 105 ~~Al~~Lt~LkGVGPATASaiLa~~~P~~~pFfSDEa~~~~~g 147 (203)
.+..+.|+.|+||||++|..|.. .-||-|-|-+.-+.|
T Consensus 22 tAs~~eL~~lpGIG~~~A~~IV~-----~GpF~s~edL~~V~G 59 (97)
T 3arc_U 22 NTNIAAFIQYRGLYPTLAKLIVK-----NAPYESVEDVLNIPG 59 (97)
T ss_dssp TSCGGGGGGSTTCTTHHHHHHHH-----HCCCSSGGGGGGCTT
T ss_pred cCCHHHHhHCCCCCHHHHHHHHH-----cCCCCCHHHHHhccC
Confidence 34567899999999999999999 348888888777766
No 21
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=91.60 E-value=0.17 Score=44.41 Aligned_cols=36 Identities=25% Similarity=0.227 Sum_probs=26.4
Q ss_pred HHHHhhc-ccCcChHHHHHHHhhhCCCCCCcccHHHHH
Q 028836 107 AVSELTV-LKGVGPATASAVLAAYAPGVAPFMSDEAMG 143 (203)
Q Consensus 107 Al~~Lt~-LkGVGPATASaiLa~~~P~~~pFfSDEa~~ 143 (203)
.++.|.+ |+||||-||.+||+...-.. .|..|--..
T Consensus 126 ~~~~Ll~~LpGIG~kTA~~iL~~a~g~p-~~~VDt~V~ 162 (287)
T 3n5n_X 126 TAETLQQLLPGVGRYTAGAIASIAFGQA-TGVVDGNVA 162 (287)
T ss_dssp SHHHHHHHSTTCCHHHHHHHHHHHSCCC-CCCCCHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHhcCCC-CccccHHHH
Confidence 5788887 99999999999999854322 344565443
No 22
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=90.71 E-value=0.16 Score=35.12 Aligned_cols=36 Identities=28% Similarity=0.522 Sum_probs=27.6
Q ss_pred HHHHhhcccCcChHHHHHHHhhhCCCCCCcccHHHHHhhcC
Q 028836 107 AVSELTVLKGVGPATASAVLAAYAPGVAPFMSDEAMGAALG 147 (203)
Q Consensus 107 Al~~Lt~LkGVGPATASaiLa~~~P~~~pFfSDEa~~~~~g 147 (203)
....|..++||||.+|..|+... +|-+-+-+..+.|
T Consensus 25 ~~~~L~~ipGIG~~~A~~Il~~r-----~~~s~~eL~~v~G 60 (75)
T 2duy_A 25 SLEELMALPGIGPVLARRIVEGR-----PYARVEDLLKVKG 60 (75)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHTC-----CCSSGGGGGGSTT
T ss_pred CHHHHHhCCCCCHHHHHHHHHHc-----ccCCHHHHHhCCC
Confidence 45678899999999999999964 5666565555655
No 23
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=89.29 E-value=0.068 Score=45.38 Aligned_cols=63 Identities=22% Similarity=0.341 Sum_probs=41.4
Q ss_pred hhhhhhhCCHHHHHHHHHHHHhhCccHHHHHHHhhcccCcChHHHHHHHhhhCCCCCCcccHHHHHh-hcC
Q 028836 78 LLDFVSSLDDSSVKSASEKAFKSLPDLTKAVSELTVLKGVGPATASAVLAAYAPGVAPFMSDEAMGA-ALG 147 (203)
Q Consensus 78 L~~lV~sN~~~~V~~~t~~Af~~l~dv~~Al~~Lt~LkGVGPATASaiLa~~~P~~~pFfSDEa~~~-~~g 147 (203)
+.+.|+.|....|. . |+....+.+.+..|..|+||||++|-+|+.--.- -||-|=|-+.. +.|
T Consensus 106 v~~iV~~~E~~fv~-f----~n~a~pITA~~~eL~~LpGIG~k~A~~IIeyRe~--G~F~s~eDL~~RV~G 169 (205)
T 2i5h_A 106 IEHIIKQDEKKYVD-F----FNKADSITTRMHQLELLPGVGKKMMWAIIEERKK--RPFESFEDIAQRVKG 169 (205)
T ss_dssp HHHHHHTTHHHHHH-H----HC--CCBCSSSBGGGGSTTCCHHHHHHHHHHHHH--SCCCSHHHHHHHSTT
T ss_pred HHHHHHhchhhhhh-h----ccccCCccCCHHHHhcCCCcCHHHHHHHHHHHhc--CCCCCHHHHHHhcCC
Confidence 33445555444442 2 3322334667788999999999999999998653 59999666643 665
No 24
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=88.06 E-value=0.32 Score=32.84 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=19.5
Q ss_pred HHHhhcccCcChHHHHHHHhhhC
Q 028836 108 VSELTVLKGVGPATASAVLAAYA 130 (203)
Q Consensus 108 l~~Lt~LkGVGPATASaiLa~~~ 130 (203)
.+.|++++||||.+|..|.+...
T Consensus 45 ~~~L~~i~Gig~~~a~~i~~~~~ 67 (75)
T 1x2i_A 45 VAELMKVEGIGEKIAKEIRRVIT 67 (75)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHh
Confidence 56788999999999999988764
No 25
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=88.03 E-value=0.82 Score=32.67 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=26.8
Q ss_pred hhCCHHHHHHHHHHHHhhCccHHHHHHHhhcccCcChHHHHHHHhhh
Q 028836 83 SSLDDSSVKSASEKAFKSLPDLTKAVSELTVLKGVGPATASAVLAAY 129 (203)
Q Consensus 83 ~sN~~~~V~~~t~~Af~~l~dv~~Al~~Lt~LkGVGPATASaiLa~~ 129 (203)
+.++++.+..-.+.-+ ....+..|+.++||||.||-.|+..+
T Consensus 11 ~~~~~~~~~~~~~~~~-----~~~~~~~L~~IpgIG~~~A~~Ll~~f 52 (91)
T 2a1j_B 11 SQDPADLLMEKLEQDF-----VSRVTECLTTVKSVNKTDSQTLLTTF 52 (91)
T ss_dssp --CCSHHHHHHHHHHH-----HHHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred ccCCHHHHhhhccCCH-----HHHHHHHHHcCCCCCHHHHHHHHHHC
Confidence 3456665655544433 23456677788888888888888764
No 26
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=85.94 E-value=0.57 Score=32.53 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=15.3
Q ss_pred HHHhhcccCcChHHHHHHHhhh
Q 028836 108 VSELTVLKGVGPATASAVLAAY 129 (203)
Q Consensus 108 l~~Lt~LkGVGPATASaiLa~~ 129 (203)
.+.|++++||||.+|..|.+..
T Consensus 55 ~eeL~~i~GIG~~~a~~I~~~~ 76 (78)
T 1kft_A 55 VEEIAKVPGISQGLAEKIFWSL 76 (78)
T ss_dssp HHHHTTSSSTTSHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHH
Confidence 4567777777777777776654
No 27
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=85.82 E-value=0.27 Score=35.88 Aligned_cols=39 Identities=23% Similarity=0.379 Sum_probs=28.8
Q ss_pred HHHhhcccCcChHHHHHHHhhhCCCCCCcccHHHHHhhcC
Q 028836 108 VSELTVLKGVGPATASAVLAAYAPGVAPFMSDEAMGAALG 147 (203)
Q Consensus 108 l~~Lt~LkGVGPATASaiLa~~~P~~~pFfSDEa~~~~~g 147 (203)
...|..++||||.+|..|+...... -+|-+-+-+..+.|
T Consensus 39 ~~~L~~ipGIG~~~A~~Il~~r~~~-g~f~s~edL~~v~G 77 (98)
T 2edu_A 39 ARDLRSLQRIGPKKAQLIVGWRELH-GPFSQVEDLERVEG 77 (98)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHHHHH-CCCSSGGGGGGSTT
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHhc-CCcCCHHHHHhCCC
Confidence 5578899999999999999986532 26655555555555
No 28
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=85.27 E-value=0.44 Score=40.18 Aligned_cols=26 Identities=35% Similarity=0.397 Sum_probs=15.8
Q ss_pred HHHHHhhcccCcChHHHHHHHhhhCC
Q 028836 106 KAVSELTVLKGVGPATASAVLAAYAP 131 (203)
Q Consensus 106 ~Al~~Lt~LkGVGPATASaiLa~~~P 131 (203)
.-+..|.+++||||.||-+||+.+.|
T Consensus 85 ~lf~~L~sv~GIGpk~A~~Ils~~~~ 110 (212)
T 2ztd_A 85 DLFLTLLSVSGVGPRLAMAALAVHDA 110 (212)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHHSCH
T ss_pred HHHHHhcCcCCcCHHHHHHHHHhCCH
Confidence 34444566666666666666666555
No 29
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=83.50 E-value=0.59 Score=38.61 Aligned_cols=26 Identities=38% Similarity=0.554 Sum_probs=18.0
Q ss_pred HHHHHhhcccCcChHHHHHHHhhhCC
Q 028836 106 KAVSELTVLKGVGPATASAVLAAYAP 131 (203)
Q Consensus 106 ~Al~~Lt~LkGVGPATASaiLa~~~P 131 (203)
..+..|.+++||||.||-+||+.+.|
T Consensus 69 ~~f~~L~~v~GIGpk~A~~iL~~f~~ 94 (191)
T 1ixr_A 69 ALFELLLSVSGVGPKVALALLSALPP 94 (191)
T ss_dssp HHHHHHHSSSCCCHHHHHHHHHHSCH
T ss_pred HHHHHHhcCCCcCHHHHHHHHHhCCh
Confidence 34456677777777777777777555
No 30
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=81.23 E-value=1 Score=36.09 Aligned_cols=50 Identities=24% Similarity=0.292 Sum_probs=35.2
Q ss_pred HHHHHHhhcccCcChHHHHHHHhhh--CCC-CCCcccHHHHHhh---cCCCCCCCH
Q 028836 105 TKAVSELTVLKGVGPATASAVLAAY--APG-VAPFMSDEAMGAA---LGHSKDYSL 154 (203)
Q Consensus 105 ~~Al~~Lt~LkGVGPATASaiLa~~--~P~-~~pFfSDEa~~~~---~g~~ikYt~ 154 (203)
+...-+||.++|||+.||-.|+... +|+ .+=-.+||-...+ ...+.+|.+
T Consensus 26 k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~~~~~~~i 81 (146)
T 3u5c_S 26 IKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQNPTHYKI 81 (146)
T ss_dssp SCTTTTGGGSTTCCHHHHHHHHHHHTCCTTSCSSSCCHHHHHHHHHHHTCTTTTTC
T ss_pred cchHhhHhhhcCCCHHHHHHHHHHcCCCCCceeccCCHHHHHHHHHHHHhhcccCc
Confidence 3344578999999999999999985 565 5566788766533 345556654
No 31
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=80.89 E-value=0.82 Score=38.04 Aligned_cols=27 Identities=33% Similarity=0.480 Sum_probs=21.7
Q ss_pred HHHHHHhhcccCcChHHHHHHHhhhCC
Q 028836 105 TKAVSELTVLKGVGPATASAVLAAYAP 131 (203)
Q Consensus 105 ~~Al~~Lt~LkGVGPATASaiLa~~~P 131 (203)
+.-+..|.+++||||.||-+||+.+.|
T Consensus 69 k~~f~~L~~V~GIGpk~A~~iL~~f~~ 95 (203)
T 1cuk_A 69 RTLFKELIKTNGVGPKLALAILSGMSA 95 (203)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHSCH
T ss_pred HHHHHHHhcCCCcCHHHHHHHHhhCCh
Confidence 445567888999999999999998665
No 32
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=79.04 E-value=1.5 Score=31.06 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=20.1
Q ss_pred HHHHHhhcccCcChHHHHHHHhhh
Q 028836 106 KAVSELTVLKGVGPATASAVLAAY 129 (203)
Q Consensus 106 ~Al~~Lt~LkGVGPATASaiLa~~ 129 (203)
.....|+.++||||.||-.|+.-+
T Consensus 16 ~~~~~L~~IpgIG~~~A~~Ll~~f 39 (89)
T 1z00_A 16 RVTECLTTVKSVNKTDSQTLLTTF 39 (89)
T ss_dssp HHHHHHTTSSSCCHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHC
Confidence 456678899999999999999874
No 33
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=78.65 E-value=1.8 Score=28.93 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=20.3
Q ss_pred HHHHHhhcccCcChHHHHHHHhhh
Q 028836 106 KAVSELTVLKGVGPATASAVLAAY 129 (203)
Q Consensus 106 ~Al~~Lt~LkGVGPATASaiLa~~ 129 (203)
.....|+.++||||.+|..|+..+
T Consensus 11 ~~~~~L~~i~giG~~~a~~Ll~~f 34 (75)
T 1x2i_A 11 RQRLIVEGLPHVSATLARRLLKHF 34 (75)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHc
Confidence 345678999999999999999864
No 34
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=78.57 E-value=0.69 Score=31.47 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=25.9
Q ss_pred HHHhhcccCcChHHHHHHHhhhC-CCCCCcccHHHHHhhcC
Q 028836 108 VSELTVLKGVGPATASAVLAAYA-PGVAPFMSDEAMGAALG 147 (203)
Q Consensus 108 l~~Lt~LkGVGPATASaiLa~~~-P~~~pFfSDEa~~~~~g 147 (203)
...|..++||||.++-.+|.-+. -+.+.=.|-|-...+.|
T Consensus 3 ~s~L~~IpGIG~kr~~~LL~~Fgs~~~i~~As~eeL~~vig 43 (63)
T 2a1j_A 3 QDFLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILG 43 (63)
T ss_dssp CHHHHTSTTCCHHHHHHHHHHCSSHHHHHTCCHHHHHHHHS
T ss_pred HhHHHcCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHHcC
Confidence 46788999999999999998632 12223344444444444
No 35
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=78.45 E-value=1.3 Score=31.28 Aligned_cols=24 Identities=21% Similarity=0.462 Sum_probs=20.8
Q ss_pred HHHHhhcccCcChHHHHHHHhhhC
Q 028836 107 AVSELTVLKGVGPATASAVLAAYA 130 (203)
Q Consensus 107 Al~~Lt~LkGVGPATASaiLa~~~ 130 (203)
..+.|++++||||.+|..|.+...
T Consensus 49 ~~~eL~~i~GIG~~~a~~I~~~l~ 72 (89)
T 1z00_A 49 SREDLALCPGLGPQKARRLFDVLH 72 (89)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred CHHHHHhCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999864
No 36
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=77.37 E-value=1.4 Score=31.47 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.4
Q ss_pred HHHhhcccCcChHHHHHHHhhhC
Q 028836 108 VSELTVLKGVGPATASAVLAAYA 130 (203)
Q Consensus 108 l~~Lt~LkGVGPATASaiLa~~~ 130 (203)
.+.|++++|||+.+|..|++...
T Consensus 63 ~~eL~~i~GIG~~~a~~I~~~l~ 85 (91)
T 2a1j_B 63 REDLALCPGLGPQKARRLFDVLH 85 (91)
T ss_dssp HHHHHTSSSCCSHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHh
Confidence 56799999999999999998863
No 37
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=76.64 E-value=2 Score=32.97 Aligned_cols=39 Identities=33% Similarity=0.394 Sum_probs=29.8
Q ss_pred HHHHHHhhcccCcChHHHHHHHhhh--CCC-CCCcccHHHHH
Q 028836 105 TKAVSELTVLKGVGPATASAVLAAY--APG-VAPFMSDEAMG 143 (203)
Q Consensus 105 ~~Al~~Lt~LkGVGPATASaiLa~~--~P~-~~pFfSDEa~~ 143 (203)
+...-+|+.++|||+.||..|+... +|+ .+=-.+||-..
T Consensus 12 k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~ 53 (114)
T 3r8n_M 12 KHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQID 53 (114)
T ss_dssp SCHHHHGGGSTTCCHHHHHHHHHHTTCCTTCCSTTCCHHHHH
T ss_pred CEeHhhHhhhcCcCHHHHHHHHHHcCcCcccCcccCCHHHHH
Confidence 3445578999999999999999984 565 55567777554
No 38
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=74.72 E-value=1.3 Score=30.66 Aligned_cols=20 Identities=30% Similarity=0.561 Sum_probs=17.9
Q ss_pred HhhcccCcChHHHHHHHhhh
Q 028836 110 ELTVLKGVGPATASAVLAAY 129 (203)
Q Consensus 110 ~Lt~LkGVGPATASaiLa~~ 129 (203)
.|..++||||.||-.|+..+
T Consensus 25 ~L~~I~gIG~~~A~~Ll~~f 44 (78)
T 1kft_A 25 SLETIEGVGPKRRQMLLKYM 44 (78)
T ss_dssp GGGGCTTCSSSHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHc
Confidence 47789999999999999875
No 39
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=73.58 E-value=1.7 Score=36.94 Aligned_cols=22 Identities=41% Similarity=0.732 Sum_probs=19.4
Q ss_pred HHHHHHHhhcccCcChHHHHHH
Q 028836 104 LTKAVSELTVLKGVGPATASAV 125 (203)
Q Consensus 104 v~~Al~~Lt~LkGVGPATASai 125 (203)
+.+.++.|.+|+||||-||.=+
T Consensus 21 l~~LI~~l~~LPGIG~KsA~Rl 42 (212)
T 3vdp_A 21 VAKLIEELSKLPGIGPKTAQRL 42 (212)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHH
Confidence 6788999999999999999744
No 40
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=70.16 E-value=4.3 Score=32.56 Aligned_cols=39 Identities=28% Similarity=0.347 Sum_probs=29.7
Q ss_pred HHHHHHhhcccCcChHHHHHHHhhh--CCC-CCCcccHHHHH
Q 028836 105 TKAVSELTVLKGVGPATASAVLAAY--APG-VAPFMSDEAMG 143 (203)
Q Consensus 105 ~~Al~~Lt~LkGVGPATASaiLa~~--~P~-~~pFfSDEa~~ 143 (203)
+...-+||.++|||+.||-.|+... +|+ .+=-.+||-..
T Consensus 19 k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~ 60 (148)
T 3j20_O 19 KQLRWALTAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVK 60 (148)
T ss_dssp SCHHHHHHHSTTCCHHHHHHHHHHHTCCSSSCTTBCCHHHHH
T ss_pred CEehhhhhhccCcCHHHHHHHHHHhCCCCCceeccCCHHHHH
Confidence 3445578999999999999999984 565 55667777554
No 41
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=69.59 E-value=1.6 Score=38.74 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=13.4
Q ss_pred HHHhhcccCcChHHHHHHHhh
Q 028836 108 VSELTVLKGVGPATASAVLAA 128 (203)
Q Consensus 108 l~~Lt~LkGVGPATASaiLa~ 128 (203)
+..|++|+||||.||..|--.
T Consensus 56 ~~~l~~lpGIG~~~A~kI~E~ 76 (335)
T 2bcq_A 56 YQEACSIPGIGKRMAEKIIEI 76 (335)
T ss_dssp HHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHhcCCCccHHHHHHHHHH
Confidence 334666777777777766555
No 42
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=69.12 E-value=4.8 Score=32.50 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=30.3
Q ss_pred HHHHHHHhhcccCcChHHHHHHHhhh--CCC-CCCcccHHHHH
Q 028836 104 LTKAVSELTVLKGVGPATASAVLAAY--APG-VAPFMSDEAMG 143 (203)
Q Consensus 104 v~~Al~~Lt~LkGVGPATASaiLa~~--~P~-~~pFfSDEa~~ 143 (203)
-+...-+|+.++|||+.||-.|+... +|+ .+=-.+||-..
T Consensus 25 ~k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~ 67 (155)
T 2xzm_M 25 KRITPIALTGIRGIGRRFAYIICKVLKIDPNARAGLLTEDQCN 67 (155)
T ss_dssp SSCHHHHHTTSTTCCHHHHHHHHHHTTCCSSSCSSCSCHHHHH
T ss_pred CCEEEEeeecccccCHHHHHHHHHHcCCCcccccccCCHHHHH
Confidence 34445678999999999999999984 555 55667777654
No 43
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=68.65 E-value=1.7 Score=38.39 Aligned_cols=33 Identities=27% Similarity=0.298 Sum_probs=24.0
Q ss_pred HhhCccHHHHHHHhhcccCcChHHHHHHHhhhC
Q 028836 98 FKSLPDLTKAVSELTVLKGVGPATASAVLAAYA 130 (203)
Q Consensus 98 f~~l~dv~~Al~~Lt~LkGVGPATASaiLa~~~ 130 (203)
++.+|..-..+..|++|+|||+.||..|--...
T Consensus 46 l~~l~~~i~~~~~l~~LpGIG~~~A~kI~E~l~ 78 (335)
T 2fmp_A 46 IAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLA 78 (335)
T ss_dssp HHHCSSCCCCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred HHhCCccccCHHHHhcCCCCcHHHHHHHHHHHH
Confidence 345553333455689999999999999988754
No 44
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=67.74 E-value=3.8 Score=29.54 Aligned_cols=42 Identities=14% Similarity=0.202 Sum_probs=28.6
Q ss_pred HHHHHhhcccCcChHHHHHHHhhhC-CCCCCcccHHHHHhhcC
Q 028836 106 KAVSELTVLKGVGPATASAVLAAYA-PGVAPFMSDEAMGAALG 147 (203)
Q Consensus 106 ~Al~~Lt~LkGVGPATASaiLa~~~-P~~~pFfSDEa~~~~~g 147 (203)
.+...|..++||||.+.-.||.-+- .+.+.=.|-|-+..+.|
T Consensus 15 ~~~s~L~~IpGIG~kr~~~LL~~FgSl~~i~~AS~eEL~~vig 57 (84)
T 1z00_B 15 GPQDFLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILG 57 (84)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHSSCHHHHHHSCHHHHHHHHS
T ss_pred cHHHHHHhCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHHhC
Confidence 4677899999999999999998642 22333345555554554
No 45
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=66.52 E-value=3.9 Score=32.90 Aligned_cols=52 Identities=23% Similarity=0.257 Sum_probs=35.5
Q ss_pred cHHHHHHHhhcccCcChHHHHHHHhhh--CCC-CCCcccHHHHHhh---cCCCCCCCH
Q 028836 103 DLTKAVSELTVLKGVGPATASAVLAAY--APG-VAPFMSDEAMGAA---LGHSKDYSL 154 (203)
Q Consensus 103 dv~~Al~~Lt~LkGVGPATASaiLa~~--~P~-~~pFfSDEa~~~~---~g~~ikYt~ 154 (203)
+-+...-+||.++|||+.||-.|+... +|+ .+=-.+||-...+ ...+.+|.+
T Consensus 22 ~~k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~~~~~~~i 79 (152)
T 3iz6_M 22 GKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHNPRQFKV 79 (152)
T ss_dssp CSSBHHHHHTTSTTCCHHHHHHHHHHHTCCSSSBTTTSCHHHHHHHHHHHHSCSSCCC
T ss_pred CCcEeHhhhhhccCcCHHHHHHHHHHcCCCCCcEeCcCCHHHHHHHHHHHHhhcccCc
Confidence 334456678999999999999999985 565 5556777655433 234455543
No 46
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=66.29 E-value=3 Score=35.79 Aligned_cols=22 Identities=36% Similarity=0.683 Sum_probs=18.9
Q ss_pred HHHHHHHhhcccCcChHHHHHH
Q 028836 104 LTKAVSELTVLKGVGPATASAV 125 (203)
Q Consensus 104 v~~Al~~Lt~LkGVGPATASai 125 (203)
+..-++.|.+|+||||-||.=+
T Consensus 7 l~~LI~~l~~LPGIG~KSA~Rl 28 (228)
T 1vdd_A 7 LVSLIRELSRLPGIGPKSAQRL 28 (228)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHH
T ss_pred HHHHHHHHhHCCCCCHHHHHHH
Confidence 5678899999999999999754
No 47
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=65.66 E-value=3.6 Score=36.31 Aligned_cols=63 Identities=19% Similarity=0.323 Sum_probs=40.6
Q ss_pred HHHHHHhhcccCcChHHHHHHHhhhCCCCCCcccHHHHHh--------hcC------CCCCCCHHHHHHHHHHHHHHHHh
Q 028836 105 TKAVSELTVLKGVGPATASAVLAAYAPGVAPFMSDEAMGA--------ALG------HSKDYSLRQYLLFADKLQAKAKV 170 (203)
Q Consensus 105 ~~Al~~Lt~LkGVGPATASaiLa~~~P~~~pFfSDEa~~~--------~~g------~~ikYt~keY~~~~~~l~~~a~e 170 (203)
..++..|++++||||.||..+-.-+-- + + |+.-.. ..| ........|-..+.+.+.+.+++
T Consensus 94 ~~~l~~l~~V~GiGpk~a~~l~~~Gi~-t---l-edL~~a~~~l~~~~~~gl~~~~~~~~ripr~ea~~ia~~i~~~l~~ 168 (335)
T 2fmp_A 94 SSSINFLTRVSGIGPSAARKFVDEGIK-T---L-EDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKK 168 (335)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHTTCC-S---H-HHHHTCGGGSCHHHHHHHHTHHHHTSCEEHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhCCCCCCHHHHHHHHHcCCC-C---H-HHHHHhhhhhHHHHHHHHHHHHHhcCcEEHHHHHHHHHHHHHHHHh
Confidence 568999999999999999988554211 1 0 111110 011 13466777777888888888876
Q ss_pred cC
Q 028836 171 SD 172 (203)
Q Consensus 171 l~ 172 (203)
+.
T Consensus 169 ~~ 170 (335)
T 2fmp_A 169 VD 170 (335)
T ss_dssp HC
T ss_pred cC
Confidence 54
No 48
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=64.71 E-value=3.5 Score=38.76 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=21.8
Q ss_pred HHHHHHhhcccCcChHHHHHHHhh
Q 028836 105 TKAVSELTVLKGVGPATASAVLAA 128 (203)
Q Consensus 105 ~~Al~~Lt~LkGVGPATASaiLa~ 128 (203)
...+..|+++.||||.||-.|++.
T Consensus 93 ~~~~~~L~~v~GVGpk~A~~i~~~ 116 (578)
T 2w9m_A 93 PPGLLDLLGVRGLGPKKIRSLWLA 116 (578)
T ss_dssp CHHHHHHTTSTTCCHHHHHHHHHT
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHc
Confidence 457889999999999999999986
No 49
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=64.17 E-value=3.3 Score=32.39 Aligned_cols=40 Identities=20% Similarity=0.275 Sum_probs=29.7
Q ss_pred HHHHHHhhcccCcChHHHHHHHhhh--CCC-CCCcccHHHHHh
Q 028836 105 TKAVSELTVLKGVGPATASAVLAAY--APG-VAPFMSDEAMGA 144 (203)
Q Consensus 105 ~~Al~~Lt~LkGVGPATASaiLa~~--~P~-~~pFfSDEa~~~ 144 (203)
+...-+|+.++|||+.||..|+... +|+ .+--.+||-...
T Consensus 13 k~v~~aLt~I~GIG~~~A~~I~~~~gi~~~~r~~~Lt~~ei~~ 55 (126)
T 2vqe_M 13 KRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVR 55 (126)
T ss_dssp SBHHHHHTTSSSCCSHHHHHHTTTTTCCTTSBGGGCCHHHHHH
T ss_pred cEeeeehhccccccHHHHHHHHHHcCCCcccccCcCCHHHHHH
Confidence 3345578999999999999999984 565 445567776653
No 50
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=63.30 E-value=4.2 Score=36.34 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=22.0
Q ss_pred cHHHHHHHhhcccCcChHHHHHHHhh
Q 028836 103 DLTKAVSELTVLKGVGPATASAVLAA 128 (203)
Q Consensus 103 dv~~Al~~Lt~LkGVGPATASaiLa~ 128 (203)
....+|..|+++.||||.||..+-.-
T Consensus 96 ~~~~~l~~l~~I~GvG~kta~~l~~~ 121 (360)
T 2ihm_A 96 ERYQTMKLFTQVFGVGVKTANRWYQE 121 (360)
T ss_dssp HHHHHHHHHHTSTTCCHHHHHHHHHT
T ss_pred cchHHHHHHhCCCCCCHHHHHHHHHc
Confidence 35568999999999999999988554
No 51
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=60.94 E-value=12 Score=27.40 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=16.1
Q ss_pred HHhhcccCcChHHHHHHHhhh
Q 028836 109 SELTVLKGVGPATASAVLAAY 129 (203)
Q Consensus 109 ~~Lt~LkGVGPATASaiLa~~ 129 (203)
..|+.|++|||+++-.+-.++
T Consensus 4 ~~L~~LPNiG~~~e~~L~~vG 24 (93)
T 3bqs_A 4 ANLSELPNIGKVLEQDLIKAG 24 (93)
T ss_dssp SCGGGSTTCCHHHHHHHHHTT
T ss_pred HHhhcCCCCCHHHHHHHHHcC
Confidence 457788888888888887774
No 52
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=60.46 E-value=4.7 Score=37.79 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=21.5
Q ss_pred HHHHHHhhcccCcChHHHHHHHhh
Q 028836 105 TKAVSELTVLKGVGPATASAVLAA 128 (203)
Q Consensus 105 ~~Al~~Lt~LkGVGPATASaiLa~ 128 (203)
...+..|+++.||||.||.+|++.
T Consensus 89 ~~~~~~l~~v~GvGpk~A~~~~~~ 112 (575)
T 3b0x_A 89 PRGVLEVMEVPGVGPKTARLLYEG 112 (575)
T ss_dssp CHHHHHHHTSTTTCHHHHHHHHHT
T ss_pred HHHHHHHhcCCCcCHHHHHHHHHh
Confidence 457889999999999999999886
No 53
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=59.88 E-value=1.9 Score=36.88 Aligned_cols=21 Identities=43% Similarity=0.661 Sum_probs=0.0
Q ss_pred HHHhhcccCcChHHHHHHHhh
Q 028836 108 VSELTVLKGVGPATASAVLAA 128 (203)
Q Consensus 108 l~~Lt~LkGVGPATASaiLa~ 128 (203)
...|..++||||.+|-.|+..
T Consensus 14 ~~~L~~IpGIGpk~a~~Ll~~ 34 (241)
T 1vq8_Y 14 YTELTDISGVGPSKAESLREA 34 (241)
T ss_dssp ---------------------
T ss_pred hhHHhcCCCCCHHHHHHHHHc
Confidence 445667777888777777765
No 54
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=58.60 E-value=5.6 Score=35.85 Aligned_cols=26 Identities=27% Similarity=0.245 Sum_probs=21.9
Q ss_pred cHHHHHHHhhcccCcChHHHHHHHhh
Q 028836 103 DLTKAVSELTVLKGVGPATASAVLAA 128 (203)
Q Consensus 103 dv~~Al~~Lt~LkGVGPATASaiLa~ 128 (203)
....+|..|+++.||||.||..+-.-
T Consensus 115 ~~~~~l~~l~~I~GvGpk~a~~ly~~ 140 (381)
T 1jms_A 115 ERYKSFKLFTSVFGVGLKTAEKWFRM 140 (381)
T ss_dssp HHHHHHHHHHTSTTCCHHHHHHHHHT
T ss_pred cchhHHHHHHccCCCCHHHHHHHHHc
Confidence 35568999999999999999988554
No 55
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=57.34 E-value=2.6 Score=31.17 Aligned_cols=59 Identities=14% Similarity=0.161 Sum_probs=32.4
Q ss_pred HHHHhhcccCcChHHHHHHHhhhCCCCCC---cccHHHHHhhcCCCCCCCHHHHHHHHHHHH
Q 028836 107 AVSELTVLKGVGPATASAVLAAYAPGVAP---FMSDEAMGAALGHSKDYSLRQYLLFADKLQ 165 (203)
Q Consensus 107 Al~~Lt~LkGVGPATASaiLa~~~P~~~p---FfSDEa~~~~~g~~ikYt~keY~~~~~~l~ 165 (203)
+|..|+.||+|||+++-.+-.++=....- -=++++|.-+......=++.-+-.+..+++
T Consensus 2 sm~~L~dLPNig~~~e~~L~~~GI~t~~~Lr~~Ga~~ay~rLk~~~~~~~~~~L~aL~gAi~ 63 (93)
T 3mab_A 2 SLANLSELPNIGKVLEQDLIKAGIKTPVELKDVGSKEAFLRIWENDSSVCMSELYALEGAVQ 63 (93)
T ss_dssp -CCCGGGSTTCCHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred CHHHHhhCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHHHHhCCCCCHHHHHHHHHHHc
Confidence 35568899999999999988885322101 113556655442122333444444444443
No 56
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=56.97 E-value=20 Score=30.00 Aligned_cols=55 Identities=18% Similarity=0.226 Sum_probs=35.3
Q ss_pred HHHhhcccCcChHHHHHHHhhhCCCCCCc------------ccHHHHHhhcCCCCCCCHHHHHHHHHHH
Q 028836 108 VSELTVLKGVGPATASAVLAAYAPGVAPF------------MSDEAMGAALGHSKDYSLRQYLLFADKL 164 (203)
Q Consensus 108 l~~Lt~LkGVGPATASaiLa~~~P~~~pF------------fSDEa~~~~~g~~ikYt~keY~~~~~~l 164 (203)
.+.|++++||||-||--|..-+.....++ ..+|+..++. ...|+-+|=...+..+
T Consensus 122 ~~~L~~vpGIG~KtA~rIi~elk~kl~~~~~~~~~~~~~~~~~~ea~~AL~--~LGy~~~ea~~av~~~ 188 (212)
T 2ztd_A 122 VAALTRVPGIGKRGAERMVLELRDKVGVAATGGALSTNGHAVRSPVVEALV--GLGFAAKQAEEATDTV 188 (212)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHTTTCC-------------CCHHHHHHHHH--HTTCCHHHHHHHHHHH
T ss_pred HHHHhhCCCCCHHHHHHHHHHHHHhhccccccccccccCcccHHHHHHHHH--HcCCCHHHHHHHHHHH
Confidence 46899999999999998875543221110 1246666665 3678877766655554
No 57
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=56.39 E-value=2.6 Score=37.68 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=23.6
Q ss_pred HhhCccHHHHHHHhhcccCcChHHHHHHHhhhC
Q 028836 98 FKSLPDLTKAVSELTVLKGVGPATASAVLAAYA 130 (203)
Q Consensus 98 f~~l~dv~~Al~~Lt~LkGVGPATASaiLa~~~ 130 (203)
.+.+|..-..+..|++|+|||+.||..|--...
T Consensus 50 l~~l~~~i~~~~~l~~lpGIG~~~A~kI~E~l~ 82 (360)
T 2ihm_A 50 LKSLPCPVASLSQLHGLPYFGEHSTRVIQELLE 82 (360)
T ss_dssp HHHCSSCCCSGGGGTTCTTCCHHHHHHHHHHHH
T ss_pred HHhCCcccCCHHHHhcCCCCCHHHHHHHHHHHH
Confidence 344553323344599999999999999988754
No 58
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=55.76 E-value=5.6 Score=35.12 Aligned_cols=61 Identities=13% Similarity=0.114 Sum_probs=39.0
Q ss_pred HHHHhhcccCcChHHHHHHHhhhCCCCCCcccHHHHHhhc-------C------CCCCCCHHHHHHHHHHHHHHHHhcC
Q 028836 107 AVSELTVLKGVGPATASAVLAAYAPGVAPFMSDEAMGAAL-------G------HSKDYSLRQYLLFADKLQAKAKVSD 172 (203)
Q Consensus 107 Al~~Lt~LkGVGPATASaiLa~~~P~~~pFfSDEa~~~~~-------g------~~ikYt~keY~~~~~~l~~~a~el~ 172 (203)
.++.|++++||||.||..+-.-+-- + + |+.-..+. | ........|-..+.+.+.+.++++.
T Consensus 94 ~l~ll~~v~GiG~k~a~~l~~~Gi~-t---l-edL~~a~~~k~~q~Igl~~~~~~~~ripr~ea~~ia~~i~~~l~~~~ 167 (335)
T 2bcq_A 94 VLELFSNIWGAGTKTAQMWYQQGFR-S---L-EDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFN 167 (335)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHTTCC-S---H-HHHHHHCCCCHHHHHHHHTTTGGGCCEEHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCCCcCHHHHHHHHHcCCC-C---H-HHHHHHhcccHHHHHHHHHHHHhcCCEEHHHHHHHHHHHHHHHHhcC
Confidence 7888999999999999988654211 1 1 12211110 1 1346677788888888888877654
No 59
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=55.58 E-value=0.99 Score=31.54 Aligned_cols=52 Identities=19% Similarity=0.310 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhhCccHH-HHHHHhhcccCcChHHHHHHHhhhCCCCCCcccHH
Q 028836 87 DSSVKSASEKAFKSLPDLT-KAVSELTVLKGVGPATASAVLAAYAPGVAPFMSDE 140 (203)
Q Consensus 87 ~~~V~~~t~~Af~~l~dv~-~Al~~Lt~LkGVGPATASaiLa~~~P~~~pFfSDE 140 (203)
+..+.+....+|..+.|+. .+.+.|+.++|++.++|..|.....- .|+|.++
T Consensus 17 ~~~~~kL~e~Gi~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr~--~~w~~~~ 69 (70)
T 1wcn_A 17 RDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARN--ICWFGDE 69 (70)
T ss_dssp HHHHHHHHTTTCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHHH--HHTTCTT
T ss_pred HHHHHHHHHcCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHH--ccCcccc
Confidence 3444444444444443432 25777888888888888887776532 3566543
No 60
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=51.18 E-value=5.3 Score=29.00 Aligned_cols=29 Identities=14% Similarity=0.175 Sum_probs=20.1
Q ss_pred HhhCccHHHHHHHhhcccCcChHHHHHHH
Q 028836 98 FKSLPDLTKAVSELTVLKGVGPATASAVL 126 (203)
Q Consensus 98 f~~l~dv~~Al~~Lt~LkGVGPATASaiL 126 (203)
++..|..-..-+.+..|+||||-++.-|=
T Consensus 47 Lk~~P~~i~s~~e~~~L~giG~ki~~~L~ 75 (87)
T 2kp7_A 47 LQRYPLPLRSGKEAKILQHFGDRLCRMLD 75 (87)
T ss_dssp HHHCCSCCCSHHHHHTCTTTCHHHHHHHH
T ss_pred HHhCCCCCCCHHHHHHhhcccHHHHHHHH
Confidence 34455444445566789999999998764
No 61
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=49.27 E-value=12 Score=30.36 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=19.3
Q ss_pred HHHhhcccCcChHHHHHHHhhhC
Q 028836 108 VSELTVLKGVGPATASAVLAAYA 130 (203)
Q Consensus 108 l~~Lt~LkGVGPATASaiLa~~~ 130 (203)
...|..++||||.+|-.|+.-+.
T Consensus 161 ~~~L~~i~gVg~~~a~~Ll~~fg 183 (219)
T 2bgw_A 161 LYILQSFPGIGRRTAERILERFG 183 (219)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHS
T ss_pred HHHHhcCCCCCHHHHHHHHHHcC
Confidence 44678999999999999999753
No 62
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=48.18 E-value=4.3 Score=36.64 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=23.6
Q ss_pred HhhCccHHHHHHHhhcccCcChHHHHHHHhhhC
Q 028836 98 FKSLPDLTKAVSELTVLKGVGPATASAVLAAYA 130 (203)
Q Consensus 98 f~~l~dv~~Al~~Lt~LkGVGPATASaiLa~~~ 130 (203)
++.+|..-..+..|++|+|||+.||..|--...
T Consensus 69 l~~l~~~i~~~~~l~~lpGIG~~ia~kI~E~l~ 101 (381)
T 1jms_A 69 LKSLPFPITSMKDTEGIPCLGDKVKSIIEGIIE 101 (381)
T ss_dssp HHTCSSCCCSGGGGTTCSSCCHHHHHHHHHHHH
T ss_pred HHhCCccccCHHHHhcCCCCcHHHHHHHHHHHH
Confidence 344553333444599999999999999987754
No 63
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=47.48 E-value=7.1 Score=29.00 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=16.5
Q ss_pred HhhcccCcChHHHHHHHhhh
Q 028836 110 ELTVLKGVGPATASAVLAAY 129 (203)
Q Consensus 110 ~Lt~LkGVGPATASaiLa~~ 129 (203)
.+++++||||+++--+-.-.
T Consensus 19 ~V~evpGIG~~~~~~L~~~G 38 (89)
T 1ci4_A 19 PVGSLAGIGEVLGKKLEERG 38 (89)
T ss_dssp CGGGSTTCCHHHHHHHHHTT
T ss_pred CcccCCCcCHHHHHHHHHcC
Confidence 47899999999998877643
No 64
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=43.00 E-value=12 Score=31.64 Aligned_cols=21 Identities=24% Similarity=0.547 Sum_probs=18.3
Q ss_pred HHhhcccCcChHHHHHHHhhh
Q 028836 109 SELTVLKGVGPATASAVLAAY 129 (203)
Q Consensus 109 ~~Lt~LkGVGPATASaiLa~~ 129 (203)
..|..++||||.||-.+|.-+
T Consensus 168 s~LdgIpGIG~k~ak~Ll~~F 188 (220)
T 2nrt_A 168 SVLDNVPGIGPIRKKKLIEHF 188 (220)
T ss_dssp HHHTTSTTCCHHHHHHHHHHH
T ss_pred ccccCCCCcCHHHHHHHHHHc
Confidence 457789999999999999864
No 65
>3oao_A Uncharacterized protein from DUF2059 family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.72A {Pseudomonas aeruginosa} PDB: 2x3o_A
Probab=42.14 E-value=21 Score=28.31 Aligned_cols=62 Identities=13% Similarity=0.216 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCcchhhhhhhCCHH--HHHHHHHHHH-hhCccHHHHHHHhh-cccCcChH
Q 028836 54 PHINTTELSKLVRWKLTRGKWRPRLLDFVSSLDDS--SVKSASEKAF-KSLPDLTKAVSELT-VLKGVGPA 120 (203)
Q Consensus 54 ~~ltkdEL~~LveWKL~rGkfRP~L~~lV~sN~~~--~V~~~t~~Af-~~l~dv~~Al~~Lt-~LkGVGPA 120 (203)
.|+|.+||..|...==+ |.-.+++..+|.- ....+++.-- ...|.+.+.++.+. +|.++|||
T Consensus 78 ~~fT~~El~~l~~FY~s-----p~Gkk~~~~~p~~~~~~~~~~q~~~~~~~p~~~~~~~em~kel~~~~~~ 143 (147)
T 3oao_A 78 TNFTESELKDLNAFYQS-----PLGKKVLEKMPRLTAESAQLTQAKLQGAVEPVNKLMADMDKELGVAAPA 143 (147)
T ss_dssp HHSCHHHHHHHHHHHHS-----HHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHTTCC---
T ss_pred HHCCHHHHHHHHHHHCC-----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcC
Confidence 58999999999998554 6666888777542 1222222222 34566777777777 69999887
No 66
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=40.19 E-value=15 Score=30.13 Aligned_cols=56 Identities=23% Similarity=0.211 Sum_probs=21.4
Q ss_pred HHHHhhcccCcChHHHHHHHhhhCCCCCCcc----------cHHHHHhhcCCCCCCCHHHHHHHHHHH
Q 028836 107 AVSELTVLKGVGPATASAVLAAYAPGVAPFM----------SDEAMGAALGHSKDYSLRQYLLFADKL 164 (203)
Q Consensus 107 Al~~Lt~LkGVGPATASaiLa~~~P~~~pFf----------SDEa~~~~~g~~ikYt~keY~~~~~~l 164 (203)
-.+.|++++|||+.||--|..-+.....+++ .+|+..++. ...|+-+|=...+..+
T Consensus 105 d~~~L~~vpGIG~K~A~rI~~~lk~k~~~~~~~~~~~~~~~~~ea~~AL~--~LGy~~~ea~~av~~~ 170 (191)
T 1ixr_A 105 DARLLTSASGVGRRLAERIALELKGKVPPHLLAGEKVESEAAEEAVMALA--ALGFKEAQARAVVLDL 170 (191)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHHHTTTSCSCC-------------------------------------
T ss_pred CHHHHHhCCCCCHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHH--HcCCCHHHHHHHHHHH
Confidence 4578999999999999998765432221111 134444443 3566666655544443
No 67
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=39.56 E-value=14 Score=35.20 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=19.2
Q ss_pred HHHhhcccCcChHHHHHHHhhh
Q 028836 108 VSELTVLKGVGPATASAVLAAY 129 (203)
Q Consensus 108 l~~Lt~LkGVGPATASaiLa~~ 129 (203)
...|+.++||||+||.-+|--+
T Consensus 467 eamLtAIaGIGp~tAeRLLEkF 488 (685)
T 4gfj_A 467 YASLISIRGIDRERAERLLKKY 488 (685)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHH
T ss_pred eeeeeccCCCCHHHHHHHHHHh
Confidence 4679999999999999999753
No 68
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=38.51 E-value=16 Score=30.13 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=18.6
Q ss_pred HHHHhhcccCcChHHHHHHHhh
Q 028836 107 AVSELTVLKGVGPATASAVLAA 128 (203)
Q Consensus 107 Al~~Lt~LkGVGPATASaiLa~ 128 (203)
-.+.|++.+|||+.||--|..-
T Consensus 106 d~~~L~~vpGIG~K~A~rI~~e 127 (203)
T 1cuk_A 106 EVGALVKLPGIGKKTAERLIVE 127 (203)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHH
T ss_pred CHHHHhhCCCCCHHHHHHHHHH
Confidence 4578999999999999988653
No 69
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=34.68 E-value=6.8 Score=31.42 Aligned_cols=42 Identities=19% Similarity=0.341 Sum_probs=27.6
Q ss_pred ccHHHHHHHhhcccCcChHHHHHHHhhhC-CC-CCCcccHHHHH
Q 028836 102 PDLTKAVSELTVLKGVGPATASAVLAAYA-PG-VAPFMSDEAMG 143 (203)
Q Consensus 102 ~dv~~Al~~Lt~LkGVGPATASaiLa~~~-P~-~~pFfSDEa~~ 143 (203)
|+-+...-.|+.++|||+.||..|+.... |+ .+--.+||-..
T Consensus 55 p~~K~v~~aLt~IyGIG~~~A~~I~~~~gI~~~rv~~Lte~ei~ 98 (145)
T 3bbn_M 55 PNHKRVEYSLQYIHGIGRSRSRQILLDLNFDNKVTKDLSEEEVI 98 (145)
T ss_dssp CCSSBTTTGGGGSTTCCSSTTTGGGTTTTCCSCBTTSCCSSTTH
T ss_pred CCCCEEEEeeeeecCccHHHHHHHHHHcCCCceEcCCCCHHHHH
Confidence 33444455789999999999999998642 32 33344554443
No 70
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=34.52 E-value=16 Score=34.37 Aligned_cols=42 Identities=31% Similarity=0.419 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhhCccHHHHHH--HhhcccCcChHHHHHHHhh
Q 028836 87 DSSVKSASEKAFKSLPDLTKAVS--ELTVLKGVGPATASAVLAA 128 (203)
Q Consensus 87 ~~~V~~~t~~Af~~l~dv~~Al~--~Lt~LkGVGPATASaiLa~ 128 (203)
+..+..+-..+|..+.|+..|+. .|++++|||+-||.-|+..
T Consensus 107 pk~A~~i~~~G~~s~edL~~a~~~~~L~~~~GiG~Ktaq~I~~~ 150 (578)
T 2w9m_A 107 PKKIRSLWLAGIDSLERLREAAESGELAGLKGFGAKSAATILEN 150 (578)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHTTTTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHhhCccccCCCCCHHHHHHHHHH
Confidence 44555555545555557777654 7889999999999998655
No 71
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=34.16 E-value=8.5 Score=37.17 Aligned_cols=14 Identities=7% Similarity=0.226 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHH
Q 028836 55 HINTTELSKLVRWK 68 (203)
Q Consensus 55 ~ltkdEL~~LveWK 68 (203)
.||.++|..|=.|+
T Consensus 487 ~L~~~~L~~l~~~~ 500 (615)
T 3sgi_A 487 ALTERDLLRTDLFR 500 (615)
T ss_dssp --------------
T ss_pred hCCHHHHhhccccc
Confidence 46778888776663
No 72
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=33.86 E-value=8.6 Score=32.59 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=0.0
Q ss_pred HHhhcccCcChHHHHHHHhhh
Q 028836 109 SELTVLKGVGPATASAVLAAY 129 (203)
Q Consensus 109 ~~Lt~LkGVGPATASaiLa~~ 129 (203)
..|..++||||.||-.||.-+
T Consensus 173 s~L~~IpGIG~k~ak~Ll~~F 193 (226)
T 3c65_A 173 SVLDDIPGVGEKRKKALLNYF 193 (226)
T ss_dssp ---------------------
T ss_pred ccccccCCCCHHHHHHHHHHh
Confidence 467899999999999999874
No 73
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=33.74 E-value=32 Score=35.15 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.8
Q ss_pred HHHhhcccCcChHHHHHHHhhh
Q 028836 108 VSELTVLKGVGPATASAVLAAY 129 (203)
Q Consensus 108 l~~Lt~LkGVGPATASaiLa~~ 129 (203)
-..|.-+.|+||..|.+|+.-.
T Consensus 716 ~~lL~~v~GlGp~kA~~Iv~~r 737 (1030)
T 3psf_A 716 ASALKYISGFGKRKAIDFLQSL 737 (1030)
T ss_dssp HTTGGGSTTCCHHHHHHHHHHH
T ss_pred HHHHhhCCCCCHHHHHHHHHHH
Confidence 6678899999999999999875
No 74
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=33.41 E-value=21 Score=27.03 Aligned_cols=44 Identities=27% Similarity=0.427 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHhhCccHH-HHHHHhhcccCcChHHHHHHHhhh
Q 028836 86 DDSSVKSASEKAFKSLPDLT-KAVSELTVLKGVGPATASAVLAAY 129 (203)
Q Consensus 86 ~~~~V~~~t~~Af~~l~dv~-~Al~~Lt~LkGVGPATASaiLa~~ 129 (203)
.+..+++.-..+|....++. +.-+.|++++|||+++|.-|+.+.
T Consensus 34 g~~~i~kL~eAG~~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA 78 (114)
T 1b22_A 34 NANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEA 78 (114)
T ss_dssp SHHHHHHHHTTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHH
T ss_pred CHHHHHHHHHcCcCcHHHHHhCCHHHHHHccCCCHHHHHHHHHHH
Confidence 35667777777776555432 236789999999999999999985
No 75
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=33.29 E-value=23 Score=28.54 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=19.6
Q ss_pred HHHHhhcccCcChHHHHHHHhhh
Q 028836 107 AVSELTVLKGVGPATASAVLAAY 129 (203)
Q Consensus 107 Al~~Lt~LkGVGPATASaiLa~~ 129 (203)
..+.|.+++||||.+|..|...+
T Consensus 192 ~~e~L~~v~GiG~~~a~~i~~~~ 214 (219)
T 2bgw_A 192 SKAEISKVEGIGEKRAEEIKKIL 214 (219)
T ss_dssp CHHHHHHSTTCCHHHHHHHHHHH
T ss_pred CHHHHhhCCCCCHHHHHHHHHHH
Confidence 35678999999999999998775
No 76
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=31.65 E-value=19 Score=31.40 Aligned_cols=16 Identities=13% Similarity=0.578 Sum_probs=14.7
Q ss_pred ccCcChHHHHHHHhhh
Q 028836 114 LKGVGPATASAVLAAY 129 (203)
Q Consensus 114 LkGVGPATASaiLa~~ 129 (203)
++||||-||.-+|.=+
T Consensus 208 VpGIG~KTA~kLL~~~ 223 (290)
T 1exn_A 208 VEGIGAKRGYNIIREF 223 (290)
T ss_dssp CTTCCHHHHHHHHHHH
T ss_pred CCcCCHhHHHHHHHHc
Confidence 8999999999999875
No 77
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=31.30 E-value=10 Score=32.29 Aligned_cols=33 Identities=30% Similarity=0.440 Sum_probs=0.0
Q ss_pred HHhhCccHH-HHHHHhhcccCcChHHHHHHHhhh
Q 028836 97 AFKSLPDLT-KAVSELTVLKGVGPATASAVLAAY 129 (203)
Q Consensus 97 Af~~l~dv~-~Al~~Lt~LkGVGPATASaiLa~~ 129 (203)
+|..+.++. +..+.|++++|||+.||.-|+...
T Consensus 35 gf~sve~L~~a~~~eL~~v~GIG~ktAe~I~~~l 68 (241)
T 1vq8_Y 35 GFESVEDVRGADQSALADVSGIGNALAARIKADV 68 (241)
T ss_dssp ----------------------------------
T ss_pred CCCCHHHHHhCCHHHHHhccCCCHHHHHHHHHHH
Confidence 454444443 346789999999999999998764
No 78
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=28.36 E-value=36 Score=35.42 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.8
Q ss_pred HHHhhcccCcChHHHHHHHhhh
Q 028836 108 VSELTVLKGVGPATASAVLAAY 129 (203)
Q Consensus 108 l~~Lt~LkGVGPATASaiLa~~ 129 (203)
-..|.-+.|+||..|.+|+...
T Consensus 713 ~~lL~~v~GlGp~kA~~Iv~~r 734 (1219)
T 3psi_A 713 ASALKYISGFGKRKAIDFLQSL 734 (1219)
T ss_dssp HTTGGGSTTCCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHH
Confidence 6778899999999999999875
No 79
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=25.37 E-value=88 Score=25.63 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=31.7
Q ss_pred HHHhhcccCcChHHHHHHHhhhCCCCCCcccHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHhcCcccc
Q 028836 108 VSELTVLKGVGPATASAVLAAYAPGVAPFMSDEAMGAALGHSKDYSLRQYLLFADKLQAKAKVSDIFFF 176 (203)
Q Consensus 108 l~~Lt~LkGVGPATASaiLa~~~P~~~pFfSDEa~~~~~g~~ikYt~keY~~~~~~l~~~a~el~~~~~ 176 (203)
|+.+.++-||.++|.|-+|. .+ |.+|+|. .+++++.++|||+.+|
T Consensus 3 i~diA~~agVS~~TVSrvLn--~~---~~vs~~t-------------------r~rV~~~a~~lgY~pn 47 (340)
T 1qpz_A 3 IKDVAKRANVSTTTVSHVIN--KT---RFVAEET-------------------RNAVWAAIKELHYSPS 47 (340)
T ss_dssp HHHHHHHHTSCHHHHHHHHH--TC---SCCCHHH-------------------HHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHCCCHHHHHHHHc--Cc---CCCCHHH-------------------HHHHHHHHHHhCCCCC
Confidence 56678889999999999998 22 3356553 3456666677776654
No 80
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=25.23 E-value=30 Score=31.47 Aligned_cols=42 Identities=24% Similarity=0.357 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHhhCccH-HHHHHHhhcccCcChHHHHHHHh
Q 028836 85 LDDSSVKSASEKAFKSLPDL-TKAVSELTVLKGVGPATASAVLA 127 (203)
Q Consensus 85 N~~~~V~~~t~~Af~~l~dv-~~Al~~Lt~LkGVGPATASaiLa 127 (203)
-++..++.... -|..+..+ .+.++.|.+..|||+.+|..|--
T Consensus 323 l~~~iae~Lv~-~FGsLq~Il~AS~eEL~~VeGIGe~rAr~Ire 365 (377)
T 3c1y_A 323 IPLSIGYNVVR-MFKTLDQISKASVEDLKKVEGIGEKRARAISE 365 (377)
T ss_dssp CCHHHHHHHHH-HHCSHHHHTTCCHHHHTTSTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHH-HhCCHHHHHhCCHHHHHhccCccHHHHHHHHH
Confidence 33444444433 35444443 34578888899999999887743
No 81
>3o18_A C-phycocyanin alpha subunit; phycobilisome, photosynthesis, light harvesting, cyanobacter; HET: CYC; 1.35A {Thermosynechococcus vulcanus} SCOP: a.1.1.3 PDB: 1i7y_A* 1on7_A* 1ktp_A* 3o2c_A* 3l0f_A* 1jbo_A* 3kvs_A* 3brp_A* 1phn_A* 2bv8_A* 1f99_A* 1gh0_A* 2uum_A* 1ha7_A* 1cpc_A* 2uul_C* 2uul_A* 2uun_A*
Probab=24.73 E-value=41 Score=26.76 Aligned_cols=51 Identities=14% Similarity=0.182 Sum_probs=44.7
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCcchhhhhhhCCHHHHHHHHHHHHhhCccH
Q 028836 53 NPHINTTELSKLVRWKLTRGKWRPRLLDFVSSLDDSSVKSASEKAFKSLPDL 104 (203)
Q Consensus 53 ~~~ltkdEL~~LveWKL~rGkfRP~L~~lV~sN~~~~V~~~t~~Af~~l~dv 104 (203)
.+|++..||..|-.. +..|.-|-..-+.+.+|.+.-|.++..+-|...|++
T Consensus 16 gRyls~~EL~~l~~~-~~~~~~Rl~aa~~l~~na~~Iv~~A~~~~~~~~P~l 66 (162)
T 3o18_A 16 GRFLSNTELQAVDGR-FKRAVASMEAARALTNNAQSLIDGAAQAVYQKFPYT 66 (162)
T ss_dssp TCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCHHHHHHHHHH-HhchHHHHHHHHHHHHhHHHHHHHHHHHHHHHCcCc
Confidence 579999999998776 457788888899999999999999999999988863
No 82
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=24.28 E-value=46 Score=31.79 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=15.4
Q ss_pred HHHHhhcccCcChHHHHHHHhh
Q 028836 107 AVSELTVLKGVGPATASAVLAA 128 (203)
Q Consensus 107 Al~~Lt~LkGVGPATASaiLa~ 128 (203)
..+.|..+.||||-+|..|...
T Consensus 542 ~~e~l~~i~giG~~~A~si~~f 563 (586)
T 4glx_A 542 SIEELQKVPDVGIVVASHVHNF 563 (586)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHH
T ss_pred CHHHHhcCCCccHHHHHHHHHH
Confidence 3566777777777777777663
No 83
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=23.54 E-value=23 Score=35.07 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=23.9
Q ss_pred HHHHhhcccCcChHHHHHHHhhhCCCCCCcccHH
Q 028836 107 AVSELTVLKGVGPATASAVLAAYAPGVAPFMSDE 140 (203)
Q Consensus 107 Al~~Lt~LkGVGPATASaiLa~~~P~~~pFfSDE 140 (203)
....|..++||||.+|..|+.--. ..-||-|-+
T Consensus 506 s~~~L~~v~GiG~~~A~~Iv~yR~-~~G~f~sr~ 538 (785)
T 3bzc_A 506 SAALLARISGLNSTLAQNIVAHRD-ANGAFRTRD 538 (785)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHHHH-HHCCCSSGG
T ss_pred CHHHHhhcCCCCHHHHHHHHHHHH-hcCCCCCHH
Confidence 457888999999999999998632 223554443
No 84
>2fsu_A Protein PHNH; C-P lyase, phosphonate metabolism, structural genomics montreal-kingston bacterial structural genomics initiative; HET: MSE; 1.70A {Escherichia coli} SCOP: c.67.2.1
Probab=23.00 E-value=61 Score=27.15 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=18.9
Q ss_pred cCcChHHHHHHHhhhCCCCCCcc
Q 028836 115 KGVGPATASAVLAAYAPGVAPFM 137 (203)
Q Consensus 115 kGVGPATASaiLa~~~P~~~pFf 137 (203)
.|.+||+++++|++.|+++ |+.
T Consensus 58 ~~l~~A~~avlLTLlD~eT-plw 79 (210)
T 2fsu_A 58 QPLNIATTSVLLTLADNDT-PVW 79 (210)
T ss_dssp TTSCHHHHHHHHHHCCTTS-CEE
T ss_pred CCCCHHHHHHHHHHhCCCc-cce
Confidence 4689999999999999876 665
No 85
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=22.71 E-value=46 Score=28.33 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=20.8
Q ss_pred HHHHhhcccCcChHHHHHHHhhh
Q 028836 107 AVSELTVLKGVGPATASAVLAAY 129 (203)
Q Consensus 107 Al~~Lt~LkGVGPATASaiLa~~ 129 (203)
.+..|..++||+|..|.+|+..+
T Consensus 235 ~~~mL~~IpGVs~~~A~~I~~~y 257 (311)
T 2ziu_A 235 FARQLMQISGVSGDKAAAVLEHY 257 (311)
T ss_dssp HHHHHTTBTTCCHHHHHHHHHHC
T ss_pred HHHHHHhccCCCHHHHHHHHHHC
Confidence 57789999999999999999884
No 86
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=22.52 E-value=18 Score=30.58 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHhhcccCcChHHHHHHHhhh
Q 028836 105 TKAVSELTVLKGVGPATASAVLAAY 129 (203)
Q Consensus 105 ~~Al~~Lt~LkGVGPATASaiLa~~ 129 (203)
.+.++.|+++ |||+.+|..|....
T Consensus 201 ~As~eeL~~V-GIG~~~A~~I~~~f 224 (226)
T 3c65_A 201 EATVEELQRA-NIPRAVAEKIYEKL 224 (226)
T ss_dssp -------------------------
T ss_pred hCCHHHHHHc-CCCHHHHHHHHHHh
Confidence 3467889999 99999999987643
No 87
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=22.05 E-value=35 Score=29.99 Aligned_cols=17 Identities=24% Similarity=0.602 Sum_probs=14.7
Q ss_pred cccCcChHHHHHHHhhh
Q 028836 113 VLKGVGPATASAVLAAY 129 (203)
Q Consensus 113 ~LkGVGPATASaiLa~~ 129 (203)
.++||||-||.-+|.-+
T Consensus 236 gipGiG~KtA~kll~~~ 252 (341)
T 3q8k_A 236 SIRGIGPKRAVDLIQKH 252 (341)
T ss_dssp CCTTCCHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHc
Confidence 38999999999999864
No 88
>1pc6_A Protein NINB; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.51A {Enterobacteria phage lambda} SCOP: d.262.1.1
Probab=21.70 E-value=78 Score=24.72 Aligned_cols=28 Identities=7% Similarity=0.148 Sum_probs=25.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCccc
Q 028836 148 HSKDYSLRQYLLFADKLQAKAKVSDIFF 175 (203)
Q Consensus 148 ~~ikYt~keY~~~~~~l~~~a~el~~~~ 175 (203)
..-+++.+++..|++.+++-|.+.|+.+
T Consensus 100 sTskl~~~ems~~Ie~i~a~aae~GV~~ 127 (146)
T 1pc6_A 100 STSRMRVGEFAELLELIQAFGTERGVKW 127 (146)
T ss_dssp CTTTCCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred ccccCCHHHHHHHHHHHHHHHHHCCCcc
Confidence 3469999999999999999999999885
No 89
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=20.75 E-value=32 Score=32.13 Aligned_cols=26 Identities=38% Similarity=0.590 Sum_probs=20.1
Q ss_pred ccHHHHHH--HhhcccCcChHHHHHHHh
Q 028836 102 PDLTKAVS--ELTVLKGVGPATASAVLA 127 (203)
Q Consensus 102 ~dv~~Al~--~Lt~LkGVGPATASaiLa 127 (203)
.++..|+. -|++++|||+-||--|+.
T Consensus 119 ~~l~~a~~~~~l~~~~GiG~k~a~~i~~ 146 (575)
T 3b0x_A 119 EKLKAALDRGDLTRLKGFGPKRAERIRE 146 (575)
T ss_dssp HHHHHHHHHTGGGGSTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCcccCCCCCccHHHHHHH
Confidence 35666653 489999999999998854
No 90
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=20.09 E-value=43 Score=28.95 Aligned_cols=17 Identities=35% Similarity=0.509 Sum_probs=14.8
Q ss_pred cccCcChHHHHHHHhhh
Q 028836 113 VLKGVGPATASAVLAAY 129 (203)
Q Consensus 113 ~LkGVGPATASaiLa~~ 129 (203)
-++||||-||.-++.-+
T Consensus 239 Gv~GiG~KtA~kLl~~~ 255 (336)
T 1rxw_A 239 GVKGVGVKKALNYIKTY 255 (336)
T ss_dssp CCTTCCHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHc
Confidence 38999999999999864
Done!