Your job contains 1 sequence.
>028837
MASSKKRKEEKAKLKNAETRKKAKPSPKKPKQSNKKTAIQNGTVSESKDEVVVTPASSSI
NDSQQDSETEQEGRSQEQEATNEKKKKPNKNGKKIERDDDDEVSKVCNFPMGRIKRIFKT
QSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHLVVSEQSKYDFLSD
YVPEKIKAEDALAQRELAEGGEG
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 028837
(203 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2205170 - symbol:NF-YC10 ""nuclear factor Y, s... 253 1.1e-21 1
CGD|CAL0001456 - symbol:HFL1 species:5476 "Candida albica... 123 2.7e-10 2
DICTYBASE|DDB_G0272740 - symbol:DDB_G0272740 "putative hi... 138 1.8e-09 1
ZFIN|ZDB-GENE-050227-18 - symbol:chrac1 "chromatin access... 129 1.6e-08 1
FB|FBgn0043001 - symbol:Chrac-16 "Chromatin accessibility... 115 4.8e-07 1
UNIPROTKB|Q0P5E8 - symbol:CHRAC1 "Chromatin accessibility... 113 7.8e-07 1
UNIPROTKB|Q9NRG0 - symbol:CHRAC1 "Chromatin accessibility... 112 1.0e-06 1
MGI|MGI:2135796 - symbol:Chrac1 "chromatin accessibility ... 108 2.6e-06 1
RGD|1309321 - symbol:Chrac1 "chromatin accessibility comp... 108 2.6e-06 1
FB|FBgn0029905 - symbol:Nf-YC "Nuclear factor Y-box C" sp... 107 2.7e-06 2
TAIR|locus:2169238 - symbol:NF-YC13 ""nuclear factor Y, s... 103 9.0e-06 1
UNIPROTKB|A6QQ14 - symbol:POLE4 "DNA polymerase epsilon s... 102 1.1e-05 1
UNIPROTKB|Q9NR33 - symbol:POLE4 "DNA polymerase epsilon s... 102 1.1e-05 1
RGD|1307793 - symbol:Pole4 "polymerase (DNA-directed), ep... 102 1.1e-05 1
MGI|MGI:1914229 - symbol:Pole4 "polymerase (DNA-directed)... 101 1.5e-05 1
UNIPROTKB|G4N5H0 - symbol:MGG_06105 "Uncharacterized prot... 107 4.9e-05 1
POMBASE|SPBC3B8.02 - symbol:php5 "CCAAT-binding factor co... 108 0.00021 1
UNIPROTKB|E2R060 - symbol:POLE4 "Uncharacterized protein"... 102 0.00070 1
>TAIR|locus:2205170 [details] [associations]
symbol:NF-YC10 ""nuclear factor Y, subunit C10""
species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA;TAS]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR003958 InterPro:IPR009072 Pfam:PF00808
EMBL:CP002684 GO:GO:0005634 GO:GO:0043565 GO:GO:0003700
Gene3D:1.10.20.10 SUPFAM:SSF47113 EMBL:AC026875 EMBL:AY086815
EMBL:BT025266 IPI:IPI00527526 RefSeq:NP_563803.1 UniGene:At.15420
ProteinModelPortal:Q9LN09 SMR:Q9LN09 IntAct:Q9LN09 STRING:Q9LN09
EnsemblPlants:AT1G07980.1 GeneID:837313 KEGG:ath:AT1G07980
TAIR:At1g07980 InParanoid:Q9LN09 OMA:NRIRRIM PhylomeDB:Q9LN09
ProtClustDB:CLSN2718115 Genevestigator:Q9LN09 Uniprot:Q9LN09
Length = 206
Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 56/149 (37%), Positives = 83/149 (55%)
Query: 50 EVVVTPASSSINDSQQDSETEQEGRSQEQEATXXXXXXXXXXXXXIERDDDDEVSKVCNF 109
E+ + +S S+ ++ + E ++ + E DD F
Sbjct: 51 EISESSSSDSVEEAIRGDEAKKSNGVVSKRGNGKSVGIPTKTSKNREEDDGGAEDAKIKF 110
Query: 110 PMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL-- 167
PM RI+RI ++ +S I +AVFLVNKAT+ F+E+F E+AY+ KD+KK + YKHL
Sbjct: 111 PMNRIRRIMRSDNSAPQIMQDAVFLVNKATEMFIERFSEEAYDSSVKDKKKFIHYKHLSS 170
Query: 168 VVSEQSKYDFLSDYVPEKIKAEDALAQRE 196
VVS +Y+FL+D VPEK+KAE AL + E
Sbjct: 171 VVSNDQRYEFLADSVPEKLKAEAALEEWE 199
>CGD|CAL0001456 [details] [associations]
symbol:HFL1 species:5476 "Candida albicans" [GO:0003690
"double-stranded DNA binding" evidence=IEA] [GO:0008622 "epsilon
DNA polymerase complex" evidence=IEA] [GO:0006348 "chromatin
silencing at telomere" evidence=IEA] InterPro:IPR003958
InterPro:IPR009072 Pfam:PF00808 CGD:CAL0001456 GO:GO:0005634
EMBL:AACQ01000017 EMBL:AACQ01000015 GO:GO:0043565 Gene3D:1.10.20.10
SUPFAM:SSF47113 eggNOG:NOG309481 KO:K03506 RefSeq:XP_721290.1
RefSeq:XP_721561.1 ProteinModelPortal:Q5AHY9 STRING:Q5AHY9
GeneID:3636883 GeneID:3637105 KEGG:cal:CaO19.10581
KEGG:cal:CaO19.3063 HOGENOM:HOG000247919 Uniprot:Q5AHY9
Length = 237
Score = 123 (48.4 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 27/101 (26%), Positives = 48/101 (47%)
Query: 99 DDDEVSKVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDR 158
+ DE P+ +IK+IFK G + AV+ AT+ F++ F E A ++
Sbjct: 54 EQDEFQNNLTLPISKIKKIFKMDPEYTGASASAVYTAGLATELFVQYFAEQASLLAKMEK 113
Query: 159 KKSLAYKHL--VVSEQSKYDFLSDYVPEKIKAEDALAQREL 197
+K + YK V+ +FLSD +P + + Q+++
Sbjct: 114 RKKIQYKDFSNAVASHDALNFLSDTIPRTQPIGELVQQKKI 154
Score = 41 (19.5 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 43 TVSESKDEVVVTPASSSINDSQQDSETEQEGR-SQEQE 79
TV+ + TP S N + D + EQ+ + +QEQ+
Sbjct: 21 TVTSQSEPSATTPKSDDQNAA--DPQPEQQPQLNQEQD 56
>DICTYBASE|DDB_G0272740 [details] [associations]
symbol:DDB_G0272740 "putative histone-like
transcription factor" species:44689 "Dictyostelium discoideum"
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR003958 InterPro:IPR009072 Pfam:PF00808
dictyBase:DDB_G0272740 GO:GO:0005634 GO:GO:0043565
Gene3D:1.10.20.10 SUPFAM:SSF47113 EMBL:AAFI02000008 eggNOG:COG5208
KO:K03506 RefSeq:XP_644985.1 ProteinModelPortal:Q7KWN0
STRING:Q7KWN0 PRIDE:Q7KWN0 EnsemblProtists:DDB0216394
GeneID:8618662 KEGG:ddi:DDB_G0272740 InParanoid:Q7KWN0 OMA:HETETDM
Uniprot:Q7KWN0
Length = 158
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 39/135 (28%), Positives = 63/135 (46%)
Query: 61 NDSQQDSETEQEGRSQEQEATXXXXXXXXXXXXXIERDDDDEVSKV-------CNFPMGR 113
++ +++ E E E +E E +D+ + SK P+ R
Sbjct: 24 HEEEEEHEDEHEEEEEEHEEEDGGEKTKSKNKDKDNTNDEKKKSKRRTRVEGDIQLPVAR 83
Query: 114 IKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHLV--VSE 171
IKRI + I+ +AV LV K+T+ FL+ ++AY+ K KK+L YK L +
Sbjct: 84 IKRIMRCDKDVKIISSDAVMLVAKSTEMFLDYLVKEAYKSSGK--KKTLQYKDLASTIKG 141
Query: 172 QSKYDFLSDYVPEKI 186
DFLS+ +PEK+
Sbjct: 142 VDNLDFLSEIIPEKV 156
>ZFIN|ZDB-GENE-050227-18 [details] [associations]
symbol:chrac1 "chromatin accessibility complex 1"
species:7955 "Danio rerio" [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR003958
InterPro:IPR009072 Pfam:PF00808 ZFIN:ZDB-GENE-050227-18
GO:GO:0043565 GO:GO:0005622 Gene3D:1.10.20.10 SUPFAM:SSF47113
CTD:54108 eggNOG:COG5208 HOGENOM:HOG000068045 HOVERGEN:HBG050946
KO:K11656 OMA:TELFVQC OrthoDB:EOG4NKBX4
GeneTree:ENSGT00510000048543 EMBL:CU896645 EMBL:BC090283
IPI:IPI00554414 RefSeq:NP_001013311.1 UniGene:Dr.76531
STRING:Q5EAR4 Ensembl:ENSDART00000062080 GeneID:503606
KEGG:dre:503606 InParanoid:Q5EAR4 NextBio:20866240 Uniprot:Q5EAR4
Length = 114
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 35/107 (32%), Positives = 54/107 (50%)
Query: 96 ERDDDDEVSKVCNFPMGRIKRIFKTQSSDIG-ITGEAVFLVNKATDKFLEQFCEDAYECC 154
E D S+ + P+ R++ I K+ S D+ I +A+FL KAT+ F++ +YE
Sbjct: 3 ETVDQAANSRTISLPISRVRLIMKS-SPDVSCINQDALFLTTKATELFVQHLALSSYENG 61
Query: 155 AKDRKKSLAYKHLV--VSEQSKYDFLSDYVPEKIKAEDALAQRELAE 199
+L+Y L V E + FL+D +P+KI A D L E E
Sbjct: 62 PSKDTNTLSYSDLADTVEETETFQFLTDILPKKILARDYLKTLEEME 108
>FB|FBgn0043001 [details] [associations]
symbol:Chrac-16 "Chromatin accessibility complex 16kD
protein" species:7227 "Drosophila melanogaster" [GO:0008623 "CHRAC"
evidence=IDA;NAS] [GO:0046982 "protein heterodimerization activity"
evidence=IPI] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] InterPro:IPR003958 InterPro:IPR009072 Pfam:PF00808
EMBL:AE014298 GO:GO:0043565 GO:GO:0006974 Gene3D:1.10.20.10
SUPFAM:SSF47113 GO:GO:0008623 KO:K11656 eggNOG:NOG259822
GeneTree:ENSGT00510000048543 PDB:2BYK PDB:2BYM PDBsum:2BYK
PDBsum:2BYM EMBL:AY113515 EMBL:AJ271142 RefSeq:NP_572776.1
UniGene:Dm.20583 SMR:Q9V452 DIP:DIP-20460N IntAct:Q9V452
MINT:MINT-1579286 STRING:Q9V452 EnsemblMetazoa:FBtr0073642
GeneID:32166 KEGG:dme:Dmel_CG15736 UCSC:CG15736-RA CTD:32166
FlyBase:FBgn0043001 InParanoid:Q9V452 OMA:HLAREAY OrthoDB:EOG4MSBFS
EvolutionaryTrace:Q9V452 GenomeRNAi:32166 NextBio:777217
Uniprot:Q9V452
Length = 140
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 30/82 (36%), Positives = 47/82 (57%)
Query: 110 PMGRIKRIFKTQSSDIG-ITGEAVFLVNKATDKFLEQFCEDAY-ECCAKDRKKSLAYKHL 167
P+ R++ I K+ S D G IT E +FL+ K T+ F+ AY E + ++L Y+HL
Sbjct: 21 PLSRVRTIMKS-SMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHL 79
Query: 168 --VVSEQSKYDFLSDYVPEKIK 187
VV++ +FL VP+KI+
Sbjct: 80 SQVVNKNKNLEFLLQIVPQKIR 101
>UNIPROTKB|Q0P5E8 [details] [associations]
symbol:CHRAC1 "Chromatin accessibility complex 1"
species:9913 "Bos taurus" [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR003958 InterPro:IPR009072 Pfam:PF00808 GO:GO:0043565
GO:GO:0005622 Gene3D:1.10.20.10 SUPFAM:SSF47113 CTD:54108
HOGENOM:HOG000068045 HOVERGEN:HBG050946 KO:K11656 OMA:TELFVQC
OrthoDB:EOG4NKBX4 eggNOG:NOG259822 GeneTree:ENSGT00510000048543
EMBL:DAAA02037530 EMBL:BC120142 IPI:IPI00696944
RefSeq:NP_001068946.1 UniGene:Bt.5830 STRING:Q0P5E8
Ensembl:ENSBTAT00000026936 GeneID:510942 KEGG:bta:510942
InParanoid:Q0P5E8 NextBio:20869693 Uniprot:Q0P5E8
Length = 130
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 29/90 (32%), Positives = 49/90 (54%)
Query: 105 KVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAY 164
++ + P+ RI+ I K+ I EA+ L KAT+ F++ +Y + KK+L Y
Sbjct: 15 RLVSLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQYLATYSYRHGSGKEKKALTY 74
Query: 165 KHLV-VSEQSK-YDFLSDYVPEKIKAEDAL 192
L +E+S+ + FL+D +P+KI A L
Sbjct: 75 SDLSNTAEESETFQFLADILPKKILASKYL 104
>UNIPROTKB|Q9NRG0 [details] [associations]
symbol:CHRAC1 "Chromatin accessibility complex protein 1"
species:9606 "Homo sapiens" [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=NAS]
[GO:0008623 "CHRAC" evidence=NAS] [GO:0006338 "chromatin
remodeling" evidence=NAS] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=NAS] [GO:0008622 "epsilon DNA polymerase
complex" evidence=NAS] InterPro:IPR003958 InterPro:IPR009072
Pfam:PF00808 GO:GO:0003677 GO:GO:0043565 GO:GO:0006338
Gene3D:1.10.20.10 SUPFAM:SSF47113 GO:GO:0008623 EMBL:AF226076
EMBL:AK023537 EMBL:BC015891 IPI:IPI00010158 RefSeq:NP_059140.1
UniGene:Hs.279704 ProteinModelPortal:Q9NRG0 SMR:Q9NRG0
STRING:Q9NRG0 PhosphoSite:Q9NRG0 DMDM:22653683 PaxDb:Q9NRG0
PRIDE:Q9NRG0 DNASU:54108 Ensembl:ENST00000220913 GeneID:54108
KEGG:hsa:54108 UCSC:uc003yvl.3 CTD:54108 GeneCards:GC08P141521
HGNC:HGNC:13544 MIM:607268 neXtProt:NX_Q9NRG0 PharmGKB:PA26481
eggNOG:COG5208 HOGENOM:HOG000068045 HOVERGEN:HBG050946
InParanoid:Q9NRG0 KO:K11656 OMA:TELFVQC OrthoDB:EOG4NKBX4
PhylomeDB:Q9NRG0 ChiTaRS:CHRAC1 GenomeRNAi:54108 NextBio:56474
ArrayExpress:Q9NRG0 Bgee:Q9NRG0 CleanEx:HS_CHRAC1
Genevestigator:Q9NRG0 GermOnline:ENSG00000104472 GO:GO:0008622
GO:GO:0003887 Uniprot:Q9NRG0
Length = 131
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 31/100 (31%), Positives = 52/100 (52%)
Query: 95 IERDDDDEVSKVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECC 154
+ +D E ++ + P+ RI+ I K+ I EA+ L KAT+ F++ +Y
Sbjct: 6 VGKDKGGE-QRLISLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQCLATYSYRHG 64
Query: 155 AKDRKKSLAYKHLV-VSEQSK-YDFLSDYVPEKIKAEDAL 192
+ KK L Y L ++QS+ + FL+D +P+KI A L
Sbjct: 65 SGKEKKVLTYSDLANTAQQSETFQFLADILPKKILASKYL 104
>MGI|MGI:2135796 [details] [associations]
symbol:Chrac1 "chromatin accessibility complex 1"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] InterPro:IPR003958
InterPro:IPR009072 Pfam:PF00808 MGI:MGI:2135796 GO:GO:0005634
GO:GO:0043565 Gene3D:1.10.20.10 SUPFAM:SSF47113 UniGene:Mm.23095
CTD:54108 HOGENOM:HOG000068045 HOVERGEN:HBG050946 KO:K11656
OMA:TELFVQC OrthoDB:EOG4NKBX4 GO:GO:0003887 EMBL:AF230805
EMBL:AK010812 EMBL:BC016593 EMBL:BC061043 IPI:IPI00123267
RefSeq:NP_444298.1 ProteinModelPortal:Q9JKP8 SMR:Q9JKP8
STRING:Q9JKP8 PhosphoSite:Q9JKP8 PaxDb:Q9JKP8 PRIDE:Q9JKP8
Ensembl:ENSMUST00000089765 GeneID:93696 KEGG:mmu:93696
UCSC:uc007wbq.1 eggNOG:NOG259822 GeneTree:ENSGT00510000048543
InParanoid:Q9JKP8 NextBio:351453 Bgee:Q9JKP8 CleanEx:MM_CHRAC1
Genevestigator:Q9JKP8 GermOnline:ENSMUSG00000068391 Uniprot:Q9JKP8
Length = 129
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 29/90 (32%), Positives = 47/90 (52%)
Query: 105 KVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAY 164
++ + P+ RI+ I K+ I EA+ L KAT+ F++ +Y + KK+L Y
Sbjct: 15 RLVSLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQYLATCSYRHGSGKAKKALTY 74
Query: 165 KHLV-VSEQSK-YDFLSDYVPEKIKAEDAL 192
L +E S+ FL+D +P+KI A L
Sbjct: 75 SDLASTAEDSETLQFLADILPKKILASKYL 104
>RGD|1309321 [details] [associations]
symbol:Chrac1 "chromatin accessibility complex 1" species:10116
"Rattus norvegicus" [GO:0005622 "intracellular" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
InterPro:IPR003958 InterPro:IPR009072 Pfam:PF00808 RGD:1309321
GO:GO:0043565 GO:GO:0005622 Gene3D:1.10.20.10 SUPFAM:SSF47113
EMBL:CH473950 CTD:54108 KO:K11656 OMA:TELFVQC OrthoDB:EOG4NKBX4
GeneTree:ENSGT00510000048543 IPI:IPI00914250 RefSeq:NP_001128352.1
UniGene:Rn.17653 Ensembl:ENSRNOT00000012121 GeneID:315058
KEGG:rno:315058 UCSC:RGD:1309321 NextBio:668566 Uniprot:D3ZAR9
Length = 128
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 29/90 (32%), Positives = 47/90 (52%)
Query: 105 KVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAY 164
++ + P+ RI+ I K+ I EA+ L KAT+ F++ +Y + KK+L Y
Sbjct: 15 RLVSLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQYLATCSYRHGSGKAKKALTY 74
Query: 165 KHLV-VSEQSK-YDFLSDYVPEKIKAEDAL 192
L +E S+ FL+D +P+KI A L
Sbjct: 75 SDLASAAEDSETLQFLADILPKKILASKYL 104
>FB|FBgn0029905 [details] [associations]
symbol:Nf-YC "Nuclear factor Y-box C" species:7227
"Drosophila melanogaster" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016602 "CCAAT-binding factor
complex" evidence=IEA] [GO:0009987 "cellular process" evidence=IMP]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0008589 "regulation of smoothened signaling pathway"
evidence=IMP] [GO:0035222 "wing disc pattern formation"
evidence=IMP] [GO:0007411 "axon guidance" evidence=IMP]
InterPro:IPR003958 InterPro:IPR009072 InterPro:IPR027170
Pfam:PF00808 GO:GO:0005634 GO:GO:0007411 EMBL:AE014298
GO:GO:0043565 Gene3D:1.10.20.10 SUPFAM:SSF47113 eggNOG:COG5208
GeneTree:ENSGT00530000063560 PANTHER:PTHR10252:SF14 HSSP:Q13952
EMBL:BT001649 RefSeq:NP_572354.1 UniGene:Dm.14924 SMR:Q9W3V9
IntAct:Q9W3V9 MINT:MINT-301373 STRING:Q9W3V9
EnsemblMetazoa:FBtr0070974 GeneID:31622 KEGG:dme:Dmel_CG3075
UCSC:CG3075-RA CTD:31622 FlyBase:FBgn0029905 InParanoid:Q9W3V9
OMA:FDNTITV OrthoDB:EOG4C2FS5 GenomeRNAi:31622 NextBio:774543
Uniprot:Q9W3V9
Length = 601
Score = 107 (42.7 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 110 PMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHLV- 168
P+ RIK+I K + I GEA L KA + F+++ A+ + R+++L +
Sbjct: 155 PLARIKKIMKLDENAKMIAGEAPLLFAKACEYFIQELTMHAWVHTEESRRRTLQRSDIAQ 214
Query: 169 -VSEQSKYDFLSDYVP-EKIKAEDA 191
++ ++DFL D VP E+IK A
Sbjct: 215 AIANYDQFDFLIDIVPREEIKPSSA 239
Score = 53 (23.7 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 40 QNGTVSESKD-EVVVTPASSSINDSQQDSETEQEGRSQEQ 78
QN + + VV +SS+++ +QQ + +Q+G+ Q+Q
Sbjct: 42 QNSAAMQRRTPNAVVVTSSSTVSSAQQ--QQQQQGQQQQQ 79
>TAIR|locus:2169238 [details] [associations]
symbol:NF-YC13 ""nuclear factor Y, subunit C13""
species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA;ISS] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] InterPro:IPR003958 InterPro:IPR009072 Pfam:PF00808
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0043565 GO:GO:0003700
GO:GO:0005622 Gene3D:1.10.20.10 SUPFAM:SSF47113 EMBL:AB017070
HSSP:Q13952 EMBL:AB493774 IPI:IPI00519531 RefSeq:NP_199139.1
UniGene:At.65631 ProteinModelPortal:Q9FHS0 SMR:Q9FHS0 PRIDE:Q9FHS0
EnsemblPlants:AT5G43250.1 GeneID:834343 KEGG:ath:AT5G43250
TAIR:At5g43250 eggNOG:NOG255369 HOGENOM:HOG000152474
InParanoid:Q9FHS0 OMA:GTRRIDD PhylomeDB:Q9FHS0
ProtClustDB:CLSN2686807 Genevestigator:Q9FHS0 Uniprot:Q9FHS0
Length = 130
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 26/88 (29%), Positives = 46/88 (52%)
Query: 99 DDDEVSKVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDR 158
+++E S FP+GR+K+I K I EA+ ++ +T+ FL E + A+ +
Sbjct: 2 EEEEGSIRPEFPIGRVKKIMKLDKDINKINSEALHVITYSTELFLHFLAEKSAVVTAEKK 61
Query: 159 KKSLAYKHLVVS---EQSKYDFLSDYVP 183
+K++ HL ++ Q DFL D +P
Sbjct: 62 RKTVNLDHLRIAVKRHQPTSDFLLDSLP 89
>UNIPROTKB|A6QQ14 [details] [associations]
symbol:POLE4 "DNA polymerase epsilon subunit 4"
species:9913 "Bos taurus" [GO:0008622 "epsilon DNA polymerase
complex" evidence=ISS] [GO:0043966 "histone H3 acetylation"
evidence=IEA] [GO:0005671 "Ada2/Gcn5/Ada3 transcription activator
complex" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] InterPro:IPR003958 InterPro:IPR009072 Pfam:PF00808
GO:GO:0043565 Gene3D:1.10.20.10 SUPFAM:SSF47113 GO:GO:0005671
GO:GO:0043966 eggNOG:COG5208 GO:GO:0008622 GO:GO:0003887 KO:K03506
EMBL:BC149592 IPI:IPI00702694 RefSeq:NP_001094695.1 UniGene:Bt.9810
ProteinModelPortal:A6QQ14 STRING:A6QQ14 Ensembl:ENSBTAT00000047798
GeneID:613730 KEGG:bta:613730 CTD:56655
GeneTree:ENSGT00530000063560 HOGENOM:HOG000007271
HOVERGEN:HBG051399 InParanoid:A6QQ14 OMA:EKSERAT OrthoDB:EOG4X6C9X
NextBio:20898734 Uniprot:A6QQ14
Length = 116
Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 23/79 (29%), Positives = 46/79 (58%)
Query: 104 SKVCNFPMGRIKRIFKTQSSDIGITG-EAVFLVNKATDKFLEQFCEDAYECCAKD-RKKS 161
+++ P+ R+K + K D+ + G EA+F++ +A + F+E +DAY CCA+ ++K+
Sbjct: 35 ARLSRLPLARVKALVKADP-DVTLAGQEAIFILARAAELFVETIAKDAY-CCAQQGKRKT 92
Query: 162 LAYKHL--VVSEQSKYDFL 178
L + L + ++ FL
Sbjct: 93 LQRRDLDNAIEAVDEFAFL 111
>UNIPROTKB|Q9NR33 [details] [associations]
symbol:POLE4 "DNA polymerase epsilon subunit 4"
species:9606 "Homo sapiens" [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0008622 "epsilon DNA polymerase
complex" evidence=IDA] [GO:0005634 "nucleus" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0043966 "histone H3
acetylation" evidence=IDA] [GO:0005671 "Ada2/Gcn5/Ada3
transcription activator complex" evidence=IDA] InterPro:IPR003958
InterPro:IPR009072 Pfam:PF00808 GO:GO:0043565 Gene3D:1.10.20.10
SUPFAM:SSF47113 GO:GO:0005671 GO:GO:0043966 eggNOG:COG5208
GO:GO:0008622 GO:GO:0003887 KO:K03506 CTD:56655
HOGENOM:HOG000007271 HOVERGEN:HBG051399 OMA:EKSERAT
OrthoDB:EOG4X6C9X EMBL:AF261688 EMBL:AC007400 EMBL:BC031331
IPI:IPI00008436 RefSeq:NP_063949.2 UniGene:Hs.469060
ProteinModelPortal:Q9NR33 SMR:Q9NR33 IntAct:Q9NR33 STRING:Q9NR33
PhosphoSite:Q9NR33 DMDM:116241340 PaxDb:Q9NR33 PRIDE:Q9NR33
Ensembl:ENST00000483063 GeneID:56655 KEGG:hsa:56655 UCSC:uc002snf.3
GeneCards:GC02P075185 H-InvDB:HIX0002198 HGNC:HGNC:18755 MIM:607269
neXtProt:NX_Q9NR33 PharmGKB:PA38677 PhylomeDB:Q9NR33
GenomeRNAi:56655 NextBio:62121 Bgee:Q9NR33 CleanEx:HS_POLE4
Genevestigator:Q9NR33 GermOnline:ENSG00000115350 Uniprot:Q9NR33
Length = 117
Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 23/79 (29%), Positives = 46/79 (58%)
Query: 104 SKVCNFPMGRIKRIFKTQSSDIGITG-EAVFLVNKATDKFLEQFCEDAYECCAKD-RKKS 161
+++ P+ R+K + K D+ + G EA+F++ +A + F+E +DAY CCA+ ++K+
Sbjct: 36 ARLSRLPLARVKALVKADP-DVTLAGQEAIFILARAAELFVETIAKDAY-CCAQQGKRKT 93
Query: 162 LAYKHL--VVSEQSKYDFL 178
L + L + ++ FL
Sbjct: 94 LQRRDLDNAIEAVDEFAFL 112
>RGD|1307793 [details] [associations]
symbol:Pole4 "polymerase (DNA-directed), epsilon 4, accessory
subunit" species:10116 "Rattus norvegicus" [GO:0005622
"intracellular" evidence=IEA] [GO:0005671 "Ada2/Gcn5/Ada3
transcription activator complex" evidence=ISO] [GO:0008622 "epsilon
DNA polymerase complex" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0043966 "histone
H3 acetylation" evidence=ISO] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] InterPro:IPR003958
InterPro:IPR009072 Pfam:PF00808 RGD:1307793 GO:GO:0043565
Gene3D:1.10.20.10 SUPFAM:SSF47113 GO:GO:0005671 EMBL:CH473957
GO:GO:0043966 KO:K03506 CTD:56655 GeneTree:ENSGT00530000063560
OrthoDB:EOG4X6C9X IPI:IPI00947739 RefSeq:NP_001102104.1
UniGene:Rn.161846 Ensembl:ENSRNOT00000067314 GeneID:362385
KEGG:rno:362385 UCSC:RGD:1307793 NextBio:679740 Uniprot:D3Z9P5
Length = 118
Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 23/79 (29%), Positives = 46/79 (58%)
Query: 104 SKVCNFPMGRIKRIFKTQSSDIGITG-EAVFLVNKATDKFLEQFCEDAYECCAKD-RKKS 161
+++ P+ R+K + K D+ + G EA+F++ +A + F+E +DAY CCA+ ++K+
Sbjct: 37 ARLSRLPLARVKALVKADP-DVTLAGQEAIFILARAAELFVETIAKDAY-CCAQQGKRKT 94
Query: 162 LAYKHL--VVSEQSKYDFL 178
L + L + ++ FL
Sbjct: 95 LQRRDLDNAIEAVDEFAFL 113
>MGI|MGI:1914229 [details] [associations]
symbol:Pole4 "polymerase (DNA-directed), epsilon 4 (p12
subunit)" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005671 "Ada2/Gcn5/Ada3 transcription
activator complex" evidence=ISO] [GO:0008622 "epsilon DNA
polymerase complex" evidence=ISO] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0043966 "histone H3 acetylation" evidence=ISO]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
InterPro:IPR003958 InterPro:IPR009072 Pfam:PF00808 MGI:MGI:1914229
GO:GO:0043565 Gene3D:1.10.20.10 SUPFAM:SSF47113 GO:GO:0005671
GO:GO:0043966 eggNOG:COG5208 GO:GO:0008622 GO:GO:0003887 KO:K03506
CTD:56655 GeneTree:ENSGT00530000063560 HOGENOM:HOG000007271
HOVERGEN:HBG051399 OrthoDB:EOG4X6C9X EMBL:AK010135 EMBL:AK010300
EMBL:AK011595 EMBL:AK160582 EMBL:AK167631 EMBL:BC023189
IPI:IPI00131960 RefSeq:NP_080158.1 UniGene:Mm.195753
ProteinModelPortal:Q9CQ36 SMR:Q9CQ36 STRING:Q9CQ36
PhosphoSite:Q9CQ36 REPRODUCTION-2DPAGE:Q9CQ36 PaxDb:Q9CQ36
PRIDE:Q9CQ36 Ensembl:ENSMUST00000095786 GeneID:66979 KEGG:mmu:66979
UCSC:uc009clk.1 InParanoid:Q9CQ36 ChiTaRS:POLE4 NextBio:323206
Bgee:Q9CQ36 Genevestigator:Q9CQ36 GermOnline:ENSMUSG00000030042
Uniprot:Q9CQ36
Length = 118
Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 23/78 (29%), Positives = 45/78 (57%)
Query: 105 KVCNFPMGRIKRIFKTQSSDIGITG-EAVFLVNKATDKFLEQFCEDAYECCAKD-RKKSL 162
++ P+ R+K + K D+ + G EA+F++ +A + F+E +DAY CCA+ ++K+L
Sbjct: 38 RLSRLPLARVKALVKADP-DVTLAGQEAIFILARAAELFVETIAKDAY-CCAQQGKRKTL 95
Query: 163 AYKHL--VVSEQSKYDFL 178
+ L + ++ FL
Sbjct: 96 QRRDLDNAIEAVDEFAFL 113
>UNIPROTKB|G4N5H0 [details] [associations]
symbol:MGG_06105 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003958 InterPro:IPR009072 Pfam:PF00808
GO:GO:0005634 EMBL:CM001233 GO:GO:0043565 Gene3D:1.10.20.10
SUPFAM:SSF47113 RefSeq:XP_003711970.1 EnsemblFungi:MGG_06105T0
GeneID:2684293 KEGG:mgr:MGG_06105 Uniprot:G4N5H0
Length = 190
Score = 107 (42.7 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 25/86 (29%), Positives = 46/86 (53%)
Query: 110 PMGRIKRIFKTQSSDIGI-TGEAVFLVNKATDKFLEQFCEDAYECCAKDRK--KSLAYKH 166
P+ R+K+I Q D+ + + A F++ A + F++ +A+ DRK +++ YK
Sbjct: 21 PLTRVKKII-AQDQDVQMCSNNAAFIITLAAELFVQHIATEAHNMAKMDRKPRRNIQYKD 79
Query: 167 LV--VSEQSKYDFLSDYVPEKIKAED 190
V+ Q +FL+D VP+ I +D
Sbjct: 80 FANAVAHQESLEFLTDVVPKTIAFKD 105
>POMBASE|SPBC3B8.02 [details] [associations]
symbol:php5 "CCAAT-binding factor complex subunit Php5"
species:4896 "Schizosaccharomyces pombe" [GO:0000785 "chromatin"
evidence=NAS] [GO:0001077 "RNA polymerase II core promoter proximal
region sequence-specific DNA binding transcription factor activity
involved in positive regulation of transcription" evidence=IC;IMP]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006109
"regulation of carbohydrate metabolic process" evidence=ISO]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=NAS] [GO:0016602 "CCAAT-binding factor complex"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IGI] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0071276 "cellular
response to cadmium ion" evidence=IMP] [GO:0071585 "detoxification
of cadmium ion" evidence=IMP] [GO:0000978 "RNA polymerase II core
promoter proximal region sequence-specific DNA binding"
evidence=TAS] InterPro:IPR003958 InterPro:IPR009072
InterPro:IPR027170 Pfam:PF00808 PomBase:SPBC3B8.02 GO:GO:0005737
GO:GO:0006109 GO:GO:0003677 EMBL:CU329671 GO:GO:0071276
GO:GO:0071585 GO:GO:0043565 GO:GO:0000785 GenomeReviews:CU329671_GR
GO:GO:0001077 Gene3D:1.10.20.10 SUPFAM:SSF47113 eggNOG:COG5208
GO:GO:0016602 EMBL:U88525 PIR:T40338 RefSeq:NP_596412.1
ProteinModelPortal:P79007 SMR:P79007 STRING:P79007
EnsemblFungi:SPBC3B8.02.1 GeneID:2540133 KEGG:spo:SPBC3B8.02
OrthoDB:EOG4BS0W7 NextBio:20801269 PANTHER:PTHR10252:SF8
Uniprot:P79007
Length = 415
Score = 108 (43.1 bits), Expect = 0.00021, P = 0.00021
Identities = 27/90 (30%), Positives = 48/90 (53%)
Query: 98 DDDDEVSKVCNFPMGRIKRIFKTQSSDIG---ITGEAVFLVNKATDKFLEQFCEDAYECC 154
+ DD+ K + P+ RIK++ KT D+ I+ EA FL K ++ F+ + A+
Sbjct: 98 EHDDQAVKTLHLPLARIKKVMKTDD-DVKNKMISAEAPFLFAKGSEIFIAELTMRAWLHA 156
Query: 155 AKDRKKSLAYKHLV--VSEQSKYDFLSDYV 182
K+++++L + VS+ YDFL D +
Sbjct: 157 KKNQRRTLQRSDIANAVSKSEMYDFLIDII 186
>UNIPROTKB|E2R060 [details] [associations]
symbol:POLE4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0046982
"protein heterodimerization activity" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] InterPro:IPR003958
InterPro:IPR009072 Pfam:PF00808 GO:GO:0005634 GO:GO:0043565
Gene3D:1.10.20.10 SUPFAM:SSF47113 GeneTree:ENSGT00530000063560
EMBL:AAEX03010961 Ensembl:ENSCAFT00000013014 NextBio:20857548
Uniprot:E2R060
Length = 253
Score = 102 (41.0 bits), Expect = 0.00071, P = 0.00070
Identities = 23/79 (29%), Positives = 46/79 (58%)
Query: 104 SKVCNFPMGRIKRIFKTQSSDIGITG-EAVFLVNKATDKFLEQFCEDAYECCAKD-RKKS 161
+++ P+ R+K + K D+ + G EA+F++ +A + F+E +DAY CCA+ ++K+
Sbjct: 176 ARLSRLPLARVKALVKADP-DVTLAGQEAIFILARAAELFVETIAKDAY-CCAQQGKRKT 233
Query: 162 LAYKHL--VVSEQSKYDFL 178
L + L + ++ FL
Sbjct: 234 LQRRDLDNAIEAVDEFAFL 252
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.309 0.126 0.340 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 203 157 0.00079 106 3 11 23 0.44 32
30 0.42 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 18
No. of states in DFA: 542 (58 KB)
Total size of DFA: 125 KB (2081 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.76u 0.07s 18.83t Elapsed: 00:00:02
Total cpu time: 18.76u 0.07s 18.83t Elapsed: 00:00:02
Start: Thu May 9 16:42:52 2013 End: Thu May 9 16:42:54 2013