BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028837
(203 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6BX14|DPB3_DEBHA DNA polymerase epsilon subunit C OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DPB3 PE=3 SV=1
Length = 277
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 107 CNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKH 166
+ P+ +IK+IFK + + AV+ AT+ F++ F E + D++K L YK
Sbjct: 90 LSLPLSKIKKIFKMDPDYLAASQSAVYATGLATELFIQYFTEQSLVLAKMDKRKKLQYKD 149
Query: 167 L--VVSEQSKYDFLSDYVP 183
V+ Q +FLSD VP
Sbjct: 150 FSNAVASQDSLNFLSDTVP 168
>sp|P79007|HAP5_SCHPO Transcriptional activator hap5 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=hap5 PE=2 SV=1
Length = 415
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Query: 98 DDDDEVSKVCNFPMGRIKRIFKTQSSDI---GITGEAVFLVNKATDKFLEQFCEDAYECC 154
+ DD+ K + P+ RIK++ KT D+ I+ EA FL K ++ F+ + A+
Sbjct: 98 EHDDQAVKTLHLPLARIKKVMKT-DDDVKNKMISAEAPFLFAKGSEIFIAELTMRAWLHA 156
Query: 155 AKDRKKSLAYKHL--VVSEQSKYDFLSDYV 182
K+++++L + VS+ YDFL D +
Sbjct: 157 KKNQRRTLQRSDIANAVSKSEMYDFLIDII 186
>sp|Q9NRG0|CHRC1_HUMAN Chromatin accessibility complex protein 1 OS=Homo sapiens GN=CHRAC1
PE=1 SV=1
Length = 131
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 105 KVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAY 164
++ + P+ RI+ I K+ I EA+ L KAT+ F++ +Y + KK L Y
Sbjct: 15 RLISLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQCLATYSYRHGSGKEKKVLTY 74
Query: 165 KHLV-VSEQSK-YDFLSDYVPEKIKAEDAL 192
L ++QS+ + FL+D +P+KI A L
Sbjct: 75 SDLANTAQQSETFQFLADILPKKILASKYL 104
>sp|Q9JKP8|CHRC1_MOUSE Chromatin accessibility complex protein 1 OS=Mus musculus GN=Chrac1
PE=1 SV=1
Length = 129
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 105 KVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAY 164
++ + P+ RI+ I K+ I EA+ L KAT+ F++ +Y + KK+L Y
Sbjct: 15 RLVSLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQYLATCSYRHGSGKAKKALTY 74
Query: 165 KHLVVS--EQSKYDFLSDYVPEKIKAEDAL 192
L + + FL+D +P+KI A L
Sbjct: 75 SDLASTAEDSETLQFLADILPKKILASKYL 104
>sp|Q9NR33|DPOE4_HUMAN DNA polymerase epsilon subunit 4 OS=Homo sapiens GN=POLE4 PE=1 SV=2
Length = 117
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 104 SKVCNFPMGRIKRIFKTQSSDIGITG-EAVFLVNKATDKFLEQFCEDAYECCAKDRKKSL 162
+++ P+ R+K + K D+ + G EA+F++ +A + F+E +DAY C + ++K+L
Sbjct: 36 ARLSRLPLARVKALVKA-DPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTL 94
Query: 163 AYKHL--VVSEQSKYDFL 178
+ L + ++ FL
Sbjct: 95 QRRDLDNAIEAVDEFAFL 112
>sp|A6QQ14|DPOE4_BOVIN DNA polymerase epsilon subunit 4 OS=Bos taurus GN=POLE4 PE=3 SV=1
Length = 116
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 104 SKVCNFPMGRIKRIFKTQSSDIGITG-EAVFLVNKATDKFLEQFCEDAYECCAKDRKKSL 162
+++ P+ R+K + K D+ + G EA+F++ +A + F+E +DAY C + ++K+L
Sbjct: 35 ARLSRLPLARVKALVKA-DPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTL 93
Query: 163 AYKHL--VVSEQSKYDFL 178
+ L + ++ FL
Sbjct: 94 QRRDLDNAIEAVDEFAFL 111
>sp|Q9CQ36|DPOE4_MOUSE DNA polymerase epsilon subunit 4 OS=Mus musculus GN=Pole4 PE=3 SV=1
Length = 118
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 105 KVCNFPMGRIKRIFKTQSSDIGITG-EAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLA 163
++ P+ R+K + K D+ + G EA+F++ +A + F+E +DAY C + ++K+L
Sbjct: 38 RLSRLPLARVKALVKA-DPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTLQ 96
Query: 164 YKHL--VVSEQSKYDFL 178
+ L + ++ FL
Sbjct: 97 RRDLDNAIEAVDEFAFL 113
>sp|C6Y4D0|YCGV_SCHPO Putative transcription factor C16C4.22 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC16C4.22 PE=3 SV=1
Length = 87
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 109 FPMGRIKRIFKTQSSDIGITGEA-VFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL 167
P+ R+KRI K Q D+ A L++ AT+ F+E+ +AY+ ++K + Y+ +
Sbjct: 10 LPLSRVKRIIK-QDEDVHYCSNASALLISVATELFVEKLATEAYQLAKLQKRKGIRYRDV 68
Query: 168 --VVSEQSKYDFLSD 180
VV + +++FLSD
Sbjct: 69 EDVVRKDDQFEFLSD 83
>sp|Q9FMV5|NFYC4_ARATH Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana
GN=NFYC4 PE=2 SV=1
Length = 250
Score = 37.7 bits (86), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 11/110 (10%)
Query: 102 EVSKVCNF-----PMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAK 156
E+ +V +F P+ RIK+I K I+ EA L KA + F+ + ++ +
Sbjct: 67 EIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEE 126
Query: 157 DRKKSLAYKHLV--VSEQSKYDFLSDYVP-EKIKAEDALAQRELAEGGEG 203
+++++L + ++ +DFL D VP E+IK E+ A A GG G
Sbjct: 127 NKRRTLQKNDIAAAITRTDIFDFLVDIVPREEIKEEEDAAS---ALGGGG 173
>sp|Q9EQZ7|RIMS2_MOUSE Regulating synaptic membrane exocytosis protein 2 OS=Mus musculus
GN=Rims2 PE=1 SV=1
Length = 1530
Score = 30.8 bits (68), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 6 KRKEEKAKLKN----AETRKKAKPSPKKPKQSNKKTAIQNGTVSESKDEVVVTPASSSIN 61
KR++ + L+N ++ + +P P +P +S K ++ ++S S++E+ TP +S +
Sbjct: 510 KREKMETMLRNDSLSSDQSESVRPPPPRPHKSKKGGKMRQVSLSSSEEELASTPEYTSCD 569
Query: 62 DSQQDSETEQE 72
D + +SE+ E
Sbjct: 570 DVELESESVSE 580
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.304 0.122 0.323
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,787,131
Number of Sequences: 539616
Number of extensions: 2901688
Number of successful extensions: 32599
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 1259
Number of HSP's that attempted gapping in prelim test: 24187
Number of HSP's gapped (non-prelim): 7399
length of query: 203
length of database: 191,569,459
effective HSP length: 112
effective length of query: 91
effective length of database: 131,132,467
effective search space: 11933054497
effective search space used: 11933054497
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 58 (26.9 bits)