Query 028837
Match_columns 203
No_of_seqs 134 out of 535
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 04:45:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028837.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028837hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2byk_A Chrac-16; nucleosome sl 99.9 4.3E-29 1.5E-33 201.6 3.5 98 102-199 13-113 (140)
2 1n1j_B NF-YC; histone-like PAI 99.9 1.5E-26 5E-31 175.5 5.5 84 101-184 12-97 (97)
3 4g92_C HAPE; transcription fac 99.9 1.9E-26 6.5E-31 181.0 6.1 83 102-184 35-119 (119)
4 1jfi_A Transcription regulator 99.9 2.9E-26 1E-30 174.4 5.2 88 104-191 7-96 (98)
5 1n1j_A NF-YB; histone-like PAI 99.8 3.3E-20 1.1E-24 138.9 3.6 86 104-192 4-92 (93)
6 2byk_B Chrac-14; nucleosome sl 99.8 3.8E-20 1.3E-24 147.1 3.1 88 105-195 6-96 (128)
7 3b0c_W CENP-W, centromere prot 99.5 4.3E-14 1.5E-18 102.5 5.6 61 106-167 2-63 (76)
8 1jfi_B DR1 protein, transcript 99.4 5.1E-14 1.8E-18 117.9 4.1 88 103-194 10-100 (179)
9 1b67_A Protein (histone HMFA); 99.4 1.7E-13 5.8E-18 96.6 5.9 59 108-167 2-60 (68)
10 1id3_C Histone H2A.1; nucleoso 99.1 4.5E-11 1.5E-15 95.4 2.8 77 103-179 20-98 (131)
11 2nqb_C Histone H2A; nucleosome 99.1 6.3E-11 2.1E-15 93.6 3.2 77 104-180 19-97 (123)
12 1tzy_A Histone H2A-IV; histone 99.0 7.3E-11 2.5E-15 94.0 3.2 76 104-179 21-98 (129)
13 2f8n_G Core histone macro-H2A. 99.0 8.4E-11 2.9E-15 92.6 2.5 77 104-180 18-96 (120)
14 1f66_C Histone H2A.Z; nucleoso 99.0 1.6E-10 5.6E-15 91.9 2.8 76 105-180 24-102 (128)
15 2f8n_K Histone H2A type 1; nuc 99.0 2.2E-10 7.5E-15 93.5 2.9 76 104-179 40-117 (149)
16 1ku5_A HPHA, archaeal histon; 98.9 2.9E-09 1E-13 75.5 6.0 60 107-167 5-64 (70)
17 3b0c_T CENP-T, centromere prot 98.8 1.9E-09 6.5E-14 83.6 4.4 84 104-191 3-88 (111)
18 1f1e_A Histone fold protein; a 98.7 1.6E-08 5.4E-13 82.8 6.8 70 100-170 74-145 (154)
19 2jss_A Chimera of histone H2B. 98.7 4.3E-09 1.5E-13 88.0 2.5 77 104-180 101-180 (192)
20 1f1e_A Histone fold protein; a 98.7 2.8E-08 9.5E-13 81.3 6.1 62 107-169 3-67 (154)
21 1tzy_D Histone H4-VI; histone- 98.6 3.6E-08 1.2E-12 75.1 4.2 61 109-170 30-92 (103)
22 2yfw_B Histone H4, H4; cell cy 98.6 4.4E-08 1.5E-12 74.7 4.0 62 108-170 29-92 (103)
23 2hue_C Histone H4; mini beta s 98.5 5.5E-08 1.9E-12 71.6 3.8 61 106-167 8-68 (84)
24 1id3_B Histone H4; nucleosome 98.5 6.5E-08 2.2E-12 73.9 4.2 70 107-177 27-100 (102)
25 2hue_B Histone H3; mini beta s 97.6 6.8E-05 2.3E-09 55.0 4.4 60 108-167 6-66 (77)
26 1taf_B TFIID TBP associated fa 97.5 0.00024 8.3E-09 51.2 6.5 61 106-167 4-64 (70)
27 2yfv_A Histone H3-like centrom 97.1 0.00038 1.3E-08 53.2 4.2 65 103-167 25-93 (100)
28 1tzy_C Histone H3; histone-fol 97.1 0.0004 1.4E-08 55.8 4.0 65 103-167 60-125 (136)
29 3v9r_A MHF1, uncharacterized p 96.8 0.00092 3.2E-08 50.2 3.5 51 125-175 31-83 (90)
30 3nqj_A Histone H3-like centrom 96.7 0.0023 7.8E-08 47.4 4.9 59 109-167 7-68 (82)
31 3b0b_B CENP-S, centromere prot 96.6 0.00053 1.8E-08 53.0 1.1 62 114-175 25-90 (107)
32 4dra_A Centromere protein S; D 96.6 0.00059 2E-08 53.4 1.4 62 114-175 33-98 (113)
33 1taf_A TFIID TBP associated fa 96.4 0.003 1E-07 45.1 4.1 57 113-170 6-64 (68)
34 4dra_E Centromere protein X; D 96.3 0.0095 3.3E-07 44.3 6.5 62 106-167 10-73 (84)
35 3r45_A Histone H3-like centrom 96.3 0.0037 1.3E-07 51.3 4.5 61 107-167 79-142 (156)
36 3nqu_A Histone H3-like centrom 96.3 0.0042 1.4E-07 50.1 4.6 67 101-167 57-126 (140)
37 3vh5_A CENP-S; histone fold, c 96.3 0.0011 3.7E-08 53.6 1.1 69 114-182 25-98 (140)
38 3b0b_C CENP-X, centromere prot 96.1 0.013 4.6E-07 43.1 6.4 62 106-167 6-69 (81)
39 2ly8_A Budding yeast chaperone 96.1 0.0028 9.5E-08 50.0 2.8 46 122-167 60-105 (121)
40 2l5a_A Histone H3-like centrom 95.9 0.015 5.2E-07 50.4 6.5 63 105-167 11-77 (235)
41 2l5a_A Histone H3-like centrom 94.5 0.036 1.2E-06 48.1 4.6 46 122-167 174-219 (235)
42 1bh9_B TAFII28; histone fold, 94.3 0.062 2.1E-06 40.0 5.0 62 105-167 13-75 (89)
43 3ksy_A SOS-1, SON of sevenless 94.3 0.016 5.6E-07 58.2 2.5 73 105-178 101-175 (1049)
44 2nqb_D Histone H2B; nucleosome 93.1 0.066 2.3E-06 42.4 3.5 56 113-169 38-96 (123)
45 1tzy_B Histone H2B; histone-fo 92.9 0.076 2.6E-06 42.2 3.5 56 113-169 41-99 (126)
46 1h3o_B Transcription initiatio 92.4 0.25 8.7E-06 35.8 5.5 59 108-167 5-64 (76)
47 2jss_A Chimera of histone H2B. 91.7 0.14 4.7E-06 42.5 3.8 56 113-169 8-66 (192)
48 2ly8_A Budding yeast chaperone 86.8 0.99 3.4E-05 35.4 5.1 52 107-158 3-58 (121)
49 3v9r_B MHF2, uncharacterized p 86.7 0.9 3.1E-05 34.1 4.6 48 109-156 2-51 (88)
50 1h3o_A Transcription initiatio 71.3 5.2 0.00018 28.9 4.2 44 112-156 10-53 (75)
51 1wwi_A Hypothetical protein TT 62.7 6.3 0.00021 32.0 3.5 85 108-193 2-104 (148)
52 1r4v_A Hypothetical protein AQ 37.6 31 0.001 28.5 3.9 86 106-192 24-127 (171)
53 1bh9_A TAFII18; histone fold, 34.8 90 0.0031 20.0 5.4 40 113-152 5-44 (45)
54 3kw6_A 26S protease regulatory 22.1 42 0.0015 22.5 1.8 36 132-167 27-66 (78)
No 1
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.95 E-value=4.3e-29 Score=201.60 Aligned_cols=98 Identities=28% Similarity=0.455 Sum_probs=68.6
Q ss_pred ccccCCCCChHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCccccCce--EEeeCCccccc
Q 028837 102 EVSKVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECC-AKDRKKSLAYKHL--VVSEQSKYDFL 178 (203)
Q Consensus 102 ~~~~~~~LPlARVKrIMK~DpDv~~IS~EA~~lIaKAtELFIq~La~~A~~~A-~~~kRKTL~y~DL--aV~~~~~fdFL 178 (203)
.....+.||++||+||||.||++++||++|+++|++|||+||++|+..||.+| +..+|+||+|+|| ||...+.|+||
T Consensus 13 ~~~~~~~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL 92 (140)
T 2byk_A 13 PPTAETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFL 92 (140)
T ss_dssp ----------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGG
T ss_pred CcccCCCCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhH
Confidence 44577899999999999999999999999999999999999999999999999 9999999999999 99999999999
Q ss_pred ccccCCcccHHHHHHHHHHhc
Q 028837 179 SDYVPEKIKAEDALAQRELAE 199 (203)
Q Consensus 179 ~DIVP~ki~l~d~l~~rk~~~ 199 (203)
.||||.++++++|++.++...
T Consensus 93 ~divP~ki~l~~~~~~~~~~~ 113 (140)
T 2byk_A 93 LQIVPQKIRVHQFQEMLRLNR 113 (140)
T ss_dssp TTTSCSCC-------------
T ss_pred hccccchhhHHHHHHHHHhcc
Confidence 999999999999999887654
No 2
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.93 E-value=1.5e-26 Score=175.47 Aligned_cols=84 Identities=26% Similarity=0.454 Sum_probs=75.2
Q ss_pred cccccCCCCChHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce--EEeeCCccccc
Q 028837 101 DEVSKVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL--VVSEQSKYDFL 178 (203)
Q Consensus 101 ~~~~~~~~LPlARVKrIMK~DpDv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL--aV~~~~~fdFL 178 (203)
..+++.+.||++||+||||.||++++||++|++++++|+|+||++|+..||.+|..++|+||+|+|| ||...+.|+||
T Consensus 12 ~~~~~~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL 91 (97)
T 1n1j_B 12 VKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFL 91 (97)
T ss_dssp --------CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGG
T ss_pred cCCcCCCcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHH
Confidence 4577889999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred ccccCC
Q 028837 179 SDYVPE 184 (203)
Q Consensus 179 ~DIVP~ 184 (203)
.|+||+
T Consensus 92 ~divP~ 97 (97)
T 1n1j_B 92 IDIVPR 97 (97)
T ss_dssp TTTSCC
T ss_pred HhhCCC
Confidence 999995
No 3
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.93 E-value=1.9e-26 Score=180.98 Aligned_cols=83 Identities=27% Similarity=0.490 Sum_probs=79.5
Q ss_pred ccccCCCCChHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce--EEeeCCcccccc
Q 028837 102 EVSKVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL--VVSEQSKYDFLS 179 (203)
Q Consensus 102 ~~~~~~~LPlARVKrIMK~DpDv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL--aV~~~~~fdFL~ 179 (203)
.+.+.+.||++||+||||.||++++||++|+++|++|||+||++|+..|+.+|..++|+||+|.|| ||...+.|+||.
T Consensus 35 ~d~k~~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dFL~ 114 (119)
T 4g92_C 35 HDYKIHQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDFLI 114 (119)
T ss_dssp CCSSCCSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGT
T ss_pred cccccCCCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhHHH
Confidence 356788899999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred cccCC
Q 028837 180 DYVPE 184 (203)
Q Consensus 180 DIVP~ 184 (203)
||||+
T Consensus 115 DiVPk 119 (119)
T 4g92_C 115 DIVPR 119 (119)
T ss_dssp TTCC-
T ss_pred HhCCC
Confidence 99995
No 4
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.92 E-value=2.9e-26 Score=174.41 Aligned_cols=88 Identities=19% Similarity=0.281 Sum_probs=60.5
Q ss_pred ccCCCCChHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce--EEeeCCcccccccc
Q 028837 104 SKVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL--VVSEQSKYDFLSDY 181 (203)
Q Consensus 104 ~~~~~LPlARVKrIMK~DpDv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL--aV~~~~~fdFL~DI 181 (203)
...+.||++||+||||.|+++++||.+|++++++|+|+|+++|+..||.+|...+|+||+|.|| +|.+++.|+||.||
T Consensus 7 k~~~~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL~di 86 (98)
T 1jfi_A 7 KYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAANKAR 86 (98)
T ss_dssp ---CCCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC-----------
T ss_pred ccCCCCChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHHHhc
Confidence 3458999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cCCcccHHHH
Q 028837 182 VPEKIKAEDA 191 (203)
Q Consensus 182 VP~ki~l~d~ 191 (203)
+|.++.+..+
T Consensus 87 vp~k~~~~~~ 96 (98)
T 1jfi_A 87 KEAELAAATA 96 (98)
T ss_dssp ----------
T ss_pred CchHhhhhhc
Confidence 9999987654
No 5
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.79 E-value=3.3e-20 Score=138.88 Aligned_cols=86 Identities=20% Similarity=0.308 Sum_probs=78.3
Q ss_pred ccCCCCChHHHHHHHhcC-CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce--EEeeCCccccccc
Q 028837 104 SKVCNFPMGRIKRIFKTQ-SSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL--VVSEQSKYDFLSD 180 (203)
Q Consensus 104 ~~~~~LPlARVKrIMK~D-pDv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL--aV~~~~~fdFL~D 180 (203)
...+.||+++|+||||.+ |++.+||+||++++++|+|+||.+|+..|+.+|...+|+||+++|| ++. .|+|+.+
T Consensus 4 ~~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~---~l~F~~~ 80 (93)
T 1n1j_A 4 EQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS---TLGFDSY 80 (93)
T ss_dssp ---CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH---HTTCGGG
T ss_pred cccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH---HcCcHhh
Confidence 356789999999999999 9999999999999999999999999999999999999999999999 886 9999999
Q ss_pred ccCCcccHHHHH
Q 028837 181 YVPEKIKAEDAL 192 (203)
Q Consensus 181 IVP~ki~l~d~l 192 (203)
+.|.+..+.+|.
T Consensus 81 i~~~~~~l~~~r 92 (93)
T 1n1j_A 81 VEPLKLYLQKFR 92 (93)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999877776654
No 6
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=99.78 E-value=3.8e-20 Score=147.11 Aligned_cols=88 Identities=17% Similarity=0.163 Sum_probs=73.9
Q ss_pred cCCCCChHHHHHHHh-cCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce--EEeeCCcccccccc
Q 028837 105 KVCNFPMGRIKRIFK-TQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL--VVSEQSKYDFLSDY 181 (203)
Q Consensus 105 ~~~~LPlARVKrIMK-~DpDv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL--aV~~~~~fdFL~DI 181 (203)
..+.||++||+|||| .+|++.+||++|+++|++|||+||.+|+..|+.+|...+||||+|+|| +|...+.|+||
T Consensus 6 ~d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~fl--- 82 (128)
T 2byk_B 6 EDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESFV--- 82 (128)
T ss_dssp -----CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTTTH---
T ss_pred ccccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHHHH---
Confidence 467899999999999 799999999999999999999999999999999999999999999999 99876666666
Q ss_pred cCCcccHHHHHHHH
Q 028837 182 VPEKIKAEDALAQR 195 (203)
Q Consensus 182 VP~ki~l~d~l~~r 195 (203)
.|..+.+.+|.+..
T Consensus 83 ~~lk~~l~~yr~~~ 96 (128)
T 2byk_B 83 PSLTQDLEVYRKVV 96 (128)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46666666666543
No 7
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.47 E-value=4.3e-14 Score=102.51 Aligned_cols=61 Identities=20% Similarity=0.348 Sum_probs=57.0
Q ss_pred CCCCChHHHHHHHh-cCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce
Q 028837 106 VCNFPMGRIKRIFK-TQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL 167 (203)
Q Consensus 106 ~~~LPlARVKrIMK-~DpDv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL 167 (203)
...||+++|+|||| ..|+ ..||.+|..+|+.|+++||++|+.+|+..|...+|+||+++||
T Consensus 2 ~~~LP~A~V~rI~K~~~p~-~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI 63 (76)
T 3b0c_W 2 RRTVPRGTLRKIIKKHKPH-LRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHT 63 (76)
T ss_dssp --CCCHHHHHHHHHHHCTT-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHH
T ss_pred CCcccccHHHHHHHHhCCC-CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence 46799999999999 7896 6899999999999999999999999999999999999999999
No 8
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.43 E-value=5.1e-14 Score=117.87 Aligned_cols=88 Identities=19% Similarity=0.304 Sum_probs=74.1
Q ss_pred cccCCCCChHHHHHHHhcC-CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce--EEeeCCcccccc
Q 028837 103 VSKVCNFPMGRIKRIFKTQ-SSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL--VVSEQSKYDFLS 179 (203)
Q Consensus 103 ~~~~~~LPlARVKrIMK~D-pDv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL--aV~~~~~fdFL~ 179 (203)
....+.||+++|.||||.. | ..+||.||..+|++|+++||.+|+..|+..|...+||||+++|| ++. .++|..
T Consensus 10 ~~eD~~LP~A~V~RImK~alp-~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~---~LgF~~ 85 (179)
T 1jfi_B 10 NDDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALE---SLGFGS 85 (179)
T ss_dssp --CCCCCCHHHHHHHHHHHST-TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH---HHTTGG
T ss_pred chhhhhcCHHHHHHHHHHhCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH---hcChHH
Confidence 3456789999999999987 6 88999999999999999999999999999999999999999999 887 667765
Q ss_pred cccCCcccHHHHHHH
Q 028837 180 DYVPEKIKAEDALAQ 194 (203)
Q Consensus 180 DIVP~ki~l~d~l~~ 194 (203)
.+-|.+..+..|.+.
T Consensus 86 fv~~lk~~L~~yre~ 100 (179)
T 1jfi_B 86 YISEVKEVLQECKTV 100 (179)
T ss_dssp GHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 555666666655543
No 9
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.43 E-value=1.7e-13 Score=96.64 Aligned_cols=59 Identities=17% Similarity=0.337 Sum_probs=57.4
Q ss_pred CCChHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce
Q 028837 108 NFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL 167 (203)
Q Consensus 108 ~LPlARVKrIMK~DpDv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL 167 (203)
.||.++|+||||.. ++..||.+|+.+++.|+|.|+.+|+.+|+.+|...+|+||+++||
T Consensus 2 ~lP~a~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di 60 (68)
T 1b67_A 2 ELPIAPIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDI 60 (68)
T ss_dssp CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHH
T ss_pred CCCccHHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHH
Confidence 58999999999999 789999999999999999999999999999999999999999999
No 10
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.06 E-value=4.5e-11 Score=95.43 Aligned_cols=77 Identities=17% Similarity=0.290 Sum_probs=73.2
Q ss_pred cccCCCCChHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce--EEeeCCcccccc
Q 028837 103 VSKVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL--VVSEQSKYDFLS 179 (203)
Q Consensus 103 ~~~~~~LPlARVKrIMK~DpDv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL--aV~~~~~fdFL~ 179 (203)
....+.||++||.||||.+.....|+..|++.++.++|+|+.++...|+..|...++++|+..|| +|.++++|+||.
T Consensus 20 ~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~nDeEL~~Ll 98 (131)
T 1id3_C 20 AKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLL 98 (131)
T ss_dssp GGGTCSSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTCHHHHHHT
T ss_pred ccCCeecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhccHHHHHHh
Confidence 34568999999999999998989999999999999999999999999999999999999999999 999999999987
No 11
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=99.05 E-value=6.3e-11 Score=93.65 Aligned_cols=77 Identities=17% Similarity=0.284 Sum_probs=73.0
Q ss_pred ccCCCCChHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce--EEeeCCccccccc
Q 028837 104 SKVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL--VVSEQSKYDFLSD 180 (203)
Q Consensus 104 ~~~~~LPlARVKrIMK~DpDv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL--aV~~~~~fdFL~D 180 (203)
...+.||++||.||||.+.....|+..|++.++.++|.|+.++...|+..|...++++|+..|| +|.++++|+||..
T Consensus 19 ragL~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~nDeEL~~Ll~ 97 (123)
T 2nqb_C 19 RAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLS 97 (123)
T ss_dssp HHTCSSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHTT
T ss_pred cCCeeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhccHHHHHHhc
Confidence 3568999999999999998888999999999999999999999999999999999999999999 9999999999863
No 12
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=99.04 E-value=7.3e-11 Score=94.00 Aligned_cols=76 Identities=16% Similarity=0.282 Sum_probs=72.8
Q ss_pred ccCCCCChHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce--EEeeCCcccccc
Q 028837 104 SKVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL--VVSEQSKYDFLS 179 (203)
Q Consensus 104 ~~~~~LPlARVKrIMK~DpDv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL--aV~~~~~fdFL~ 179 (203)
-..+.||++||.||||.+.....|+..|++.++.++|+|+.++...|+..|...++++|+..|| +|.++++|+||.
T Consensus 21 ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~nDeEL~~L~ 98 (129)
T 1tzy_A 21 RAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL 98 (129)
T ss_dssp HHTCSSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHT
T ss_pred cCceeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccHHHHHHh
Confidence 3568999999999999998888999999999999999999999999999999999999999999 999999999987
No 13
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=99.01 E-value=8.4e-11 Score=92.57 Aligned_cols=77 Identities=18% Similarity=0.260 Sum_probs=72.9
Q ss_pred ccCCCCChHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce--EEeeCCccccccc
Q 028837 104 SKVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL--VVSEQSKYDFLSD 180 (203)
Q Consensus 104 ~~~~~LPlARVKrIMK~DpDv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL--aV~~~~~fdFL~D 180 (203)
-..+.||++||.|+||.......|+..|++.++.++|.|+.++...|...|...++++|+..|| +|.++++|+||..
T Consensus 18 ragLqfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~nDeEL~~Ll~ 96 (120)
T 2f8n_G 18 KAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVANDEELNQLLK 96 (120)
T ss_dssp HHTCSSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHTT
T ss_pred ccCccCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhcCHHHHHHhC
Confidence 3468999999999999998888999999999999999999999999999999999999999999 9999999999974
No 14
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=98.98 E-value=1.6e-10 Score=91.89 Aligned_cols=76 Identities=20% Similarity=0.268 Sum_probs=72.0
Q ss_pred cCCCCChHHHHHHHhcCCCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce--EEeeCCccccccc
Q 028837 105 KVCNFPMGRIKRIFKTQSSD-IGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL--VVSEQSKYDFLSD 180 (203)
Q Consensus 105 ~~~~LPlARVKrIMK~DpDv-~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL--aV~~~~~fdFL~D 180 (203)
..+.||++||.|+||..... ..|+..|++.++.++|.|+.++...|...|...++++|++.|| +|.++++|+||.+
T Consensus 24 agLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~nDeEL~~Ll~ 102 (128)
T 1f66_C 24 AGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK 102 (128)
T ss_dssp HTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHSHHHHHHCC
T ss_pred CCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccHHHhhhhc
Confidence 46899999999999999865 5999999999999999999999999999999999999999999 9999999999976
No 15
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=98.95 E-value=2.2e-10 Score=93.47 Aligned_cols=76 Identities=16% Similarity=0.286 Sum_probs=72.6
Q ss_pred ccCCCCChHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce--EEeeCCcccccc
Q 028837 104 SKVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL--VVSEQSKYDFLS 179 (203)
Q Consensus 104 ~~~~~LPlARVKrIMK~DpDv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL--aV~~~~~fdFL~ 179 (203)
...+.||++||.||||.......|+..|+++++.++|.|+.++...|...|...++++|+..|| +|.++++|+||.
T Consensus 40 ragLqFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~nDeEL~~Ll 117 (149)
T 2f8n_K 40 RAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL 117 (149)
T ss_dssp HHTCSSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSHHHHHHT
T ss_pred cCCeeccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhccHHHHHHh
Confidence 3568999999999999998888999999999999999999999999999999999999999999 999999999987
No 16
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=98.88 E-value=2.9e-09 Score=75.54 Aligned_cols=60 Identities=10% Similarity=0.295 Sum_probs=57.4
Q ss_pred CCCChHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce
Q 028837 107 CNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL 167 (203)
Q Consensus 107 ~~LPlARVKrIMK~DpDv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL 167 (203)
..||.+.|+||||.. ++..||.+++..+..+++.|+..++.+|..+|...+|+||+.+||
T Consensus 5 ~~lp~a~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV 64 (70)
T 1ku5_A 5 GELPIAPVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDI 64 (70)
T ss_dssp CCSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHH
T ss_pred ccCChHHHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHH
Confidence 479999999999975 688999999999999999999999999999999999999999998
No 17
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=98.84 E-value=1.9e-09 Score=83.61 Aligned_cols=84 Identities=18% Similarity=0.335 Sum_probs=66.6
Q ss_pred ccCCCCChHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce--EEeeCCcccccccc
Q 028837 104 SKVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL--VVSEQSKYDFLSDY 181 (203)
Q Consensus 104 ~~~~~LPlARVKrIMK~DpDv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL--aV~~~~~fdFL~DI 181 (203)
+....||.+-|+|||+.. .+..||.++...+..+++.|++.++.+|..+|...+|+||+.+|| ++..++ ||.++
T Consensus 3 ~~d~~lP~a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g---~~~~~ 78 (111)
T 3b0c_T 3 TREPEIASSLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQG---LVTDK 78 (111)
T ss_dssp -------CHHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT---SSBTT
T ss_pred CCCCCCCHHHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCC---Ccccc
Confidence 556789999999999987 788999999999999999999999999999999999999999999 887544 55555
Q ss_pred cCCcccHHHH
Q 028837 182 VPEKIKAEDA 191 (203)
Q Consensus 182 VP~ki~l~d~ 191 (203)
.|....+..+
T Consensus 79 ~~l~~l~~~~ 88 (111)
T 3b0c_T 79 MPLHVLVERH 88 (111)
T ss_dssp BCHHHHHHHH
T ss_pred ccHHHHHHHh
Confidence 6654444444
No 18
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.74 E-value=1.6e-08 Score=82.81 Aligned_cols=70 Identities=23% Similarity=0.209 Sum_probs=64.0
Q ss_pred ccccccCCCCChHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce--EEe
Q 028837 100 DDEVSKVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL--VVS 170 (203)
Q Consensus 100 ~~~~~~~~~LPlARVKrIMK~DpDv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL--aV~ 170 (203)
+..+...+.||++.|.||||.. .+..||.+|...+..++|.|+.+++..|..+|...+||||+..|| ++.
T Consensus 74 ~v~d~~~l~lP~a~V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~ 145 (154)
T 1f1e_A 74 GVEDYDGELFGRATVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAIT 145 (154)
T ss_dssp TSTTCCSCCCCHHHHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cCCccccccCCccHHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 3445667799999999999998 788999999999999999999999999999999999999999999 654
No 19
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.70 E-value=4.3e-09 Score=88.04 Aligned_cols=77 Identities=21% Similarity=0.314 Sum_probs=72.0
Q ss_pred ccCCCCChHHHHHHHhcCCCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce--EEeeCCccccccc
Q 028837 104 SKVCNFPMGRIKRIFKTQSSD-IGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL--VVSEQSKYDFLSD 180 (203)
Q Consensus 104 ~~~~~LPlARVKrIMK~DpDv-~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL--aV~~~~~fdFL~D 180 (203)
-..+.||++||.|+||..... ..|+.+|++.++.++|.|+.++...|...|...++++|++.|| +|.++++|++|.+
T Consensus 101 ragl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~nD~eL~~L~~ 180 (192)
T 2jss_A 101 RAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDDELDSLIR 180 (192)
T ss_dssp HSSCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHTSHHHHHHHC
T ss_pred cCCCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhccHHHHHHHh
Confidence 346899999999999998775 5899999999999999999999999999999999999999999 9999999999976
No 20
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.66 E-value=2.8e-08 Score=81.35 Aligned_cols=62 Identities=21% Similarity=0.281 Sum_probs=58.9
Q ss_pred CCCChHHHHHHHhcC-CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce--EE
Q 028837 107 CNFPMGRIKRIFKTQ-SSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL--VV 169 (203)
Q Consensus 107 ~~LPlARVKrIMK~D-pDv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL--aV 169 (203)
..||.+-|.||||.. |+ .+||.+|...++.+++.|+.+++..|..+|...+||||+..|| |+
T Consensus 3 ~~LP~a~V~Riik~~lg~-~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~ 67 (154)
T 1f1e_A 3 VELPKAAIERIFRQGIGE-RRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALA 67 (154)
T ss_dssp -CCCHHHHHHHHHTTSTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHH
T ss_pred ccCCccHHHHHHHhcCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 479999999999998 77 9999999999999999999999999999999999999999999 55
No 21
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=98.58 E-value=3.6e-08 Score=75.12 Aligned_cols=61 Identities=16% Similarity=0.197 Sum_probs=57.8
Q ss_pred CChHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce--EEe
Q 028837 109 FPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL--VVS 170 (203)
Q Consensus 109 LPlARVKrIMK~DpDv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL--aV~ 170 (203)
||.+.|++||+.. .+..||.+|+..+..++|.|++.++.+|..+|...+|+||+..|| ++.
T Consensus 30 ip~~~I~Rlar~~-G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr 92 (103)
T 1tzy_D 30 ITKPAIRRLARRG-GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALK 92 (103)
T ss_dssp SCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CCHHHHHHHHHHc-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 9999999999987 468999999999999999999999999999999999999999999 655
No 22
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=98.55 E-value=4.4e-08 Score=74.70 Aligned_cols=62 Identities=18% Similarity=0.230 Sum_probs=57.7
Q ss_pred CCChHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce--EEe
Q 028837 108 NFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL--VVS 170 (203)
Q Consensus 108 ~LPlARVKrIMK~DpDv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL--aV~ 170 (203)
.||.+.|++||+.. .+..||.+|+..++.++|.|++.++.+|..+|...+|+||+..|| ++.
T Consensus 29 gip~~~I~Rlar~~-G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr 92 (103)
T 2yfw_B 29 GITKPAIRRLARRG-GVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALK 92 (103)
T ss_dssp -CCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cCCHHHHHHHHHHc-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHH
Confidence 39999999999987 458999999999999999999999999999999999999999999 554
No 23
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=98.52 E-value=5.5e-08 Score=71.59 Aligned_cols=61 Identities=16% Similarity=0.193 Sum_probs=57.7
Q ss_pred CCCCChHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce
Q 028837 106 VCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL 167 (203)
Q Consensus 106 ~~~LPlARVKrIMK~DpDv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL 167 (203)
...||.+-|++||+.. .+..||.++...+..+++.|++.++.+|..+|...+|+||+..||
T Consensus 8 ~~~ip~~~I~Riar~~-Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV 68 (84)
T 2hue_C 8 IQGITKPAIRRLARRG-GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDV 68 (84)
T ss_dssp CCSSCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHH
T ss_pred CCCCCHHHHHHHHHHc-CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHH
Confidence 3459999999999986 579999999999999999999999999999999999999999999
No 24
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.52 E-value=6.5e-08 Score=73.94 Aligned_cols=70 Identities=17% Similarity=0.252 Sum_probs=61.7
Q ss_pred CCCChHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce--EEe--eCCcccc
Q 028837 107 CNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL--VVS--EQSKYDF 177 (203)
Q Consensus 107 ~~LPlARVKrIMK~DpDv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL--aV~--~~~~fdF 177 (203)
..||.+-|++||+.. .+..||.++...+..++|.|++.++.+|..+|...+|+||+..|| ++. ..+-|-|
T Consensus 27 ~~ip~~~I~Rlar~~-Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g~~lYGf 100 (102)
T 1id3_B 27 QGITKPAIRRLARRG-GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLYGF 100 (102)
T ss_dssp GGSCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCCEESS
T ss_pred CCCCHHHHHHHHHHc-CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCCCC
Confidence 349999999999986 579999999999999999999999999999999999999999999 444 3444444
No 25
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=97.57 E-value=6.8e-05 Score=55.00 Aligned_cols=60 Identities=20% Similarity=0.464 Sum_probs=51.2
Q ss_pred CCChHH-HHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce
Q 028837 108 NFPMGR-IKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL 167 (203)
Q Consensus 108 ~LPlAR-VKrIMK~DpDv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL 167 (203)
.+|..| |+.|.+.-..-..++.+|+.++..|+|.|+-.|..+++.+|...+|.||...||
T Consensus 6 k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDi 66 (77)
T 2hue_B 6 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDI 66 (77)
T ss_dssp HHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHH
T ss_pred cchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhH
Confidence 456666 456655433447899999999999999999999999999999999999999998
No 26
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=97.51 E-value=0.00024 Score=51.15 Aligned_cols=61 Identities=11% Similarity=0.159 Sum_probs=56.9
Q ss_pred CCCCChHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce
Q 028837 106 VCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL 167 (203)
Q Consensus 106 ~~~LPlARVKrIMK~DpDv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL 167 (203)
...||++-|++|.++-. +..+|.|+...++.-+|.-+.+++++|...+...+|++|+.+||
T Consensus 4 ~s~lp~~~v~~iaes~G-i~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI 64 (70)
T 1taf_B 4 GSSISAESMKVIAESIG-VGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDI 64 (70)
T ss_dssp SCCCCHHHHHHHHHHTT-CCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHH
T ss_pred cccCCHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHH
Confidence 35799999999999754 57899999999999999999999999999999999999999998
No 27
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=97.13 E-value=0.00038 Score=53.21 Aligned_cols=65 Identities=12% Similarity=0.257 Sum_probs=50.5
Q ss_pred cccCCCCChHH-HHHHHhcCC---CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce
Q 028837 103 VSKVCNFPMGR-IKRIFKTQS---SDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL 167 (203)
Q Consensus 103 ~~~~~~LPlAR-VKrIMK~Dp---Dv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL 167 (203)
+..-..+|..| |+.|++.-. ....++.+|+.++..|+|.|+-.|..+|+.+|...+|.||...||
T Consensus 25 ~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDi 93 (100)
T 2yfv_A 25 DLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDM 93 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHH
T ss_pred hhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHH
Confidence 34445556665 455554322 257899999999999999999999999999999999999999998
No 28
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=97.08 E-value=0.0004 Score=55.79 Aligned_cols=65 Identities=18% Similarity=0.398 Sum_probs=52.7
Q ss_pred cccCCCCChHH-HHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce
Q 028837 103 VSKVCNFPMGR-IKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL 167 (203)
Q Consensus 103 ~~~~~~LPlAR-VKrIMK~DpDv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL 167 (203)
+..-..+|..| |+.|++.-.....++.+|+.++..|+|.|+-.|..+++.+|...+|.||...||
T Consensus 60 ~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDi 125 (136)
T 1tzy_C 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDI 125 (136)
T ss_dssp SCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHH
T ss_pred hhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhH
Confidence 34445556666 455655322336899999999999999999999999999999999999999998
No 29
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.00092 Score=50.21 Aligned_cols=51 Identities=12% Similarity=0.040 Sum_probs=46.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce--EEeeCCcc
Q 028837 125 IGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL--VVSEQSKY 175 (203)
Q Consensus 125 ~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL--aV~~~~~f 175 (203)
..||++++.+++..++.|+..|+.++..+|...+|+||+.+|| ++..++.+
T Consensus 31 ~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn~~L 83 (90)
T 3v9r_A 31 IKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQPDL 83 (90)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHH
T ss_pred ceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhChHH
Confidence 5799999999999999999999999999999999999999999 76666554
No 30
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=96.67 E-value=0.0023 Score=47.40 Aligned_cols=59 Identities=24% Similarity=0.413 Sum_probs=48.2
Q ss_pred CChHHH-HHHHhc-CC-CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce
Q 028837 109 FPMGRI-KRIFKT-QS-SDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL 167 (203)
Q Consensus 109 LPlARV-KrIMK~-Dp-Dv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL 167 (203)
+|..|+ +.|.+. .+ ....++.+|+.++..|+|.|+-.|..+|+.+|...+|.||..+||
T Consensus 7 lPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDi 68 (82)
T 3nqj_A 7 LPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDV 68 (82)
T ss_dssp HHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHH
T ss_pred ccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHH
Confidence 455553 334432 12 345899999999999999999999999999999999999999998
No 31
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=96.60 E-value=0.00053 Score=52.99 Aligned_cols=62 Identities=8% Similarity=0.154 Sum_probs=51.4
Q ss_pred HHHHHhcCC--CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce--EEeeCCcc
Q 028837 114 IKRIFKTQS--SDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL--VVSEQSKY 175 (203)
Q Consensus 114 VKrIMK~Dp--Dv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL--aV~~~~~f 175 (203)
|.+|++.-. --..+|++++.+++..++.|+..|+.++..+|...+|+||+.+|| ++..++.+
T Consensus 25 V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn~~l 90 (107)
T 3b0b_B 25 TGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRSNSL 90 (107)
T ss_dssp HHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHH
T ss_pred HHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhCHHH
Confidence 556666331 124799999999999999999999999999999999999999999 77655443
No 32
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=96.59 E-value=0.00059 Score=53.40 Aligned_cols=62 Identities=6% Similarity=0.193 Sum_probs=50.7
Q ss_pred HHHHHhcC--CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce--EEeeCCcc
Q 028837 114 IKRIFKTQ--SSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL--VVSEQSKY 175 (203)
Q Consensus 114 VKrIMK~D--pDv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL--aV~~~~~f 175 (203)
|-||++.- .--..||.+++.+|+..++.|+..|+.++...|...+|+||+.+|| ++..++.+
T Consensus 33 V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~~~L 98 (113)
T 4dra_A 33 VGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSL 98 (113)
T ss_dssp HHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhCHHH
Confidence 44566632 1124599999999999999999999999999999999999999999 66655443
No 33
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=96.42 E-value=0.003 Score=45.14 Aligned_cols=57 Identities=18% Similarity=0.167 Sum_probs=51.6
Q ss_pred HHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce--EEe
Q 028837 113 RIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL--VVS 170 (203)
Q Consensus 113 RVKrIMK~DpDv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL--aV~ 170 (203)
.|.+|+|. -.+..++..++..+...++.++..++.+|..+|...+|+||+.+|| +|.
T Consensus 6 ~i~~iLk~-~G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~ 64 (68)
T 1taf_A 6 VIMSILKE-LNVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATE 64 (68)
T ss_dssp HHHHHHHH-TTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHH-CCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 46777776 6678999999999999999999999999999999999999999999 654
No 34
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=96.34 E-value=0.0095 Score=44.27 Aligned_cols=62 Identities=11% Similarity=0.195 Sum_probs=55.7
Q ss_pred CCCCChHHHHHHHhcC--CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce
Q 028837 106 VCNFPMGRIKRIFKTQ--SSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL 167 (203)
Q Consensus 106 ~~~LPlARVKrIMK~D--pDv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL 167 (203)
...||..-|.||++.. .+-.+|+.+|+.++++-.++||..-+.+|...|...+...|...||
T Consensus 10 ~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~L 73 (84)
T 4dra_E 10 GSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQL 73 (84)
T ss_dssp -CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHH
Confidence 4679999999999964 5788999999999999999999999999999998888888988888
No 35
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=96.31 E-value=0.0037 Score=51.33 Aligned_cols=61 Identities=23% Similarity=0.378 Sum_probs=48.7
Q ss_pred CCCChHHH-HHHHhcC-C-CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce
Q 028837 107 CNFPMGRI-KRIFKTQ-S-SDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL 167 (203)
Q Consensus 107 ~~LPlARV-KrIMK~D-p-Dv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL 167 (203)
..+|..|+ +.|.+.- + ....++.+|+.++..|+|.|+-.|..+|+.+|...+|.||...||
T Consensus 79 pKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDI 142 (156)
T 3r45_A 79 RKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDV 142 (156)
T ss_dssp CHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHH
T ss_pred ccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHH
Confidence 34444442 3444321 2 235899999999999999999999999999999999999999998
No 36
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=96.27 E-value=0.0042 Score=50.13 Aligned_cols=67 Identities=21% Similarity=0.354 Sum_probs=53.2
Q ss_pred cccccCCCCChHHH-HHHHhc--CCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce
Q 028837 101 DEVSKVCNFPMGRI-KRIFKT--QSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL 167 (203)
Q Consensus 101 ~~~~~~~~LPlARV-KrIMK~--DpDv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL 167 (203)
+.+..-..+|..|+ +.|.+. +.....++.+|+.++..|+|.|+-.|..+|+.+|...+|.||...||
T Consensus 57 st~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDi 126 (140)
T 3nqu_A 57 STHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDV 126 (140)
T ss_dssp --CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHH
T ss_pred ccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHH
Confidence 34455566777764 555542 11245899999999999999999999999999999999999999998
No 37
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=96.25 E-value=0.0011 Score=53.61 Aligned_cols=69 Identities=7% Similarity=0.175 Sum_probs=54.3
Q ss_pred HHHHHhcC--CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce--EEeeCCcc-ccccccc
Q 028837 114 IKRIFKTQ--SSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL--VVSEQSKY-DFLSDYV 182 (203)
Q Consensus 114 VKrIMK~D--pDv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL--aV~~~~~f-dFL~DIV 182 (203)
|-+|++.- ..-..||.+++.+|+.+++.|+..|+.++..+|...+|+||+.+|| ++..++.+ .+|.+++
T Consensus 25 VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn~~L~~~L~~~~ 98 (140)
T 3vh5_A 25 TGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYITQKS 98 (140)
T ss_dssp HHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCHHHHHHHHHHH
Confidence 44566532 2235699999999999999999999999999999999999999999 76665543 4444443
No 38
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=96.14 E-value=0.013 Score=43.07 Aligned_cols=62 Identities=13% Similarity=0.303 Sum_probs=55.6
Q ss_pred CCCCChHHHHHHHhc--CCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce
Q 028837 106 VCNFPMGRIKRIFKT--QSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL 167 (203)
Q Consensus 106 ~~~LPlARVKrIMK~--DpDv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL 167 (203)
...||..=|.+|++. ..+-.+|+++|+-++++-.++||..-+.+|...|..++...|...||
T Consensus 6 ~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~L 69 (81)
T 3b0b_C 6 EGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHV 69 (81)
T ss_dssp -CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHH
T ss_pred CCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHH
Confidence 568999999999995 45688999999999999999999999999999998888888888888
No 39
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=96.13 E-value=0.0028 Score=50.01 Aligned_cols=46 Identities=17% Similarity=0.218 Sum_probs=38.2
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce
Q 028837 122 SSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL 167 (203)
Q Consensus 122 pDv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL 167 (203)
..+..||.++...+..+.+.|++.++++|..+|...+||||+..||
T Consensus 60 gGvkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV 105 (121)
T 2ly8_A 60 RGSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDV 105 (121)
T ss_dssp CCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHH
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHH
Confidence 3566777777777777888888888888888888889999999998
No 40
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=95.88 E-value=0.015 Score=50.45 Aligned_cols=63 Identities=14% Similarity=0.317 Sum_probs=55.5
Q ss_pred cCCCCChHH-HHHHHhcCC---CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce
Q 028837 105 KVCNFPMGR-IKRIFKTQS---SDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL 167 (203)
Q Consensus 105 ~~~~LPlAR-VKrIMK~Dp---Dv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL 167 (203)
.-..||..| |+.|++.-. .......+|+.++.-|+|.|+-.|-..++-+|...+|-||...||
T Consensus 11 lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDi 77 (235)
T 2l5a_A 11 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDM 77 (235)
T ss_dssp CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHH
T ss_pred cccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhH
Confidence 346789988 677887532 357899999999999999999999999999999999999999999
No 41
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=94.49 E-value=0.036 Score=48.08 Aligned_cols=46 Identities=17% Similarity=0.198 Sum_probs=44.3
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce
Q 028837 122 SSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL 167 (203)
Q Consensus 122 pDv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL 167 (203)
..+..||.++...+..+++.|++.++++|..+|...+||||+..||
T Consensus 174 gGVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV 219 (235)
T 2l5a_A 174 GGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDV 219 (235)
T ss_dssp TTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHH
Confidence 4678999999999999999999999999999999999999999999
No 42
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=94.34 E-value=0.062 Score=39.99 Aligned_cols=62 Identities=23% Similarity=0.440 Sum_probs=51.7
Q ss_pred cCCCCChHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCccccCce
Q 028837 105 KVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDR-KKSLAYKHL 167 (203)
Q Consensus 105 ~~~~LPlARVKrIMK~DpDv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~k-RKTL~y~DL 167 (203)
+...||-+.|||||..--+ ..|+...+.+|+-.+-+||..|+..|..+....+ +.-|++.||
T Consensus 13 Rrs~f~k~~vKrl~~~~~~-~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~Hi 75 (89)
T 1bh9_B 13 RRSAFPKAAIKRLIQSITG-TSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHM 75 (89)
T ss_dssp HHCCCCHHHHHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHH
T ss_pred HHhcCCHHHHHHHHHHHcC-CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHH
Confidence 4568999999999985432 3688999999999999999999999999976653 557888877
No 43
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=94.33 E-value=0.016 Score=58.22 Aligned_cols=73 Identities=7% Similarity=0.077 Sum_probs=63.2
Q ss_pred cCCCCChHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce--EEeeCCccccc
Q 028837 105 KVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL--VVSEQSKYDFL 178 (203)
Q Consensus 105 ~~~~LPlARVKrIMK~DpDv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL--aV~~~~~fdFL 178 (203)
..+.||++||.|+++..- ..+|+..|++.++-..|.+...+..-|...|...++..|++.|| +|.+++.+.-|
T Consensus 101 ~~l~~pv~~~~~~l~~~~-~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~d~eL~~l 175 (1049)
T 3ksy_A 101 NPLSLPVEKIHPLLKEVL-GYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCADKVLMDM 175 (1049)
T ss_dssp SSCSSCHHHHHHHHHHHH-CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHHCSSHHHH
T ss_pred CCccccHHHHHHHhhccc-ccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccCCHHHHHH
Confidence 358899999999995332 34899999999999999999999999999999999999999999 88888877555
No 44
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=93.15 E-value=0.066 Score=42.38 Aligned_cols=56 Identities=14% Similarity=0.312 Sum_probs=47.7
Q ss_pred HHHHHHh-cCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce--EE
Q 028837 113 RIKRIFK-TQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL--VV 169 (203)
Q Consensus 113 RVKrIMK-~DpDv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL--aV 169 (203)
-|-+|+| ..||.+ ||..|.-+|.--+.-+.+.++.+|...+...+|+||+..|| +|
T Consensus 38 YIyKVLKQVhpd~g-ISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAv 96 (123)
T 2nqb_D 38 YIYTVLKQVHPDTG-ISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAV 96 (123)
T ss_dssp HHHHHHHHHCTTCE-ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHH
T ss_pred HHHHHHHHhCCCCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHH
Confidence 4666676 467754 78888888888888888999999999999999999999999 66
No 45
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=92.88 E-value=0.076 Score=42.17 Aligned_cols=56 Identities=13% Similarity=0.305 Sum_probs=48.4
Q ss_pred HHHHHHh-cCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce--EE
Q 028837 113 RIKRIFK-TQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL--VV 169 (203)
Q Consensus 113 RVKrIMK-~DpDv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL--aV 169 (203)
-|-+|+| ..||.+ ||..|.-+|.--+.-+.+.++.+|...+..++|+||+..|| +|
T Consensus 41 YIyKVLKQVhpd~g-ISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAv 99 (126)
T 1tzy_B 41 YVYKVLKQVHPDTG-ISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAV 99 (126)
T ss_dssp HHHHHHHHHCTTCE-ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred HHHHHHHHhCCCCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 4677777 577755 88889888888888888999999999999999999999999 66
No 46
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=92.41 E-value=0.25 Score=35.85 Aligned_cols=59 Identities=10% Similarity=0.255 Sum_probs=52.8
Q ss_pred CCChHHHHHHHhc-CCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce
Q 028837 108 NFPMGRIKRIFKT-QSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL 167 (203)
Q Consensus 108 ~LPlARVKrIMK~-DpDv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL 167 (203)
.|+-.++..+|+. || -..+..++--++..-+..||...+..|...|..++..+|...||
T Consensus 5 vl~k~~L~~Lv~~idp-~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDv 64 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDP-NEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDV 64 (76)
T ss_dssp SSCHHHHHHHHHHHCS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHH
T ss_pred cccHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHH
Confidence 4677788888885 55 46889999999999999999999999999999999999999998
No 47
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=91.71 E-value=0.14 Score=42.47 Aligned_cols=56 Identities=16% Similarity=0.342 Sum_probs=50.0
Q ss_pred HHHHHHhc-CCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce--EE
Q 028837 113 RIKRIFKT-QSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL--VV 169 (203)
Q Consensus 113 RVKrIMK~-DpDv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL--aV 169 (203)
-|.|++|. .||.+ ||.+|.-.|.--+..+++.|+.+|...+...+|+||+..|| +|
T Consensus 8 yi~kvLkqv~p~~~-iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Av 66 (192)
T 2jss_A 8 YIYKVLKQTHPDTG-ISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAV 66 (192)
T ss_dssp HHHHHHHHHCSSCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHH
T ss_pred HHHHHHcccCCCCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 47788874 67754 99999999999999999999999999999999999999999 66
No 48
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=86.76 E-value=0.99 Score=35.38 Aligned_cols=52 Identities=15% Similarity=0.280 Sum_probs=42.3
Q ss_pred CCCChHH-HHHHHhc-C--CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 028837 107 CNFPMGR-IKRIFKT-Q--SSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDR 158 (203)
Q Consensus 107 ~~LPlAR-VKrIMK~-D--pDv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~k 158 (203)
..+|..| |+.|++. . ........+|+.++.-|+|.|+-.|-.+++-+|....
T Consensus 3 ~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~ 58 (121)
T 2ly8_A 3 SKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLV 58 (121)
T ss_dssp SCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred CccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCC
Confidence 4688888 5667763 2 2356899999999999999999999999999887653
No 49
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=86.70 E-value=0.9 Score=34.05 Aligned_cols=48 Identities=17% Similarity=0.299 Sum_probs=41.6
Q ss_pred CChHHHHHHHhc--CCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028837 109 FPMGRIKRIFKT--QSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAK 156 (203)
Q Consensus 109 LPlARVKrIMK~--DpDv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~ 156 (203)
+|..-|-||++. ..+-.+|+++|+.++++=+++||..-..+|+.....
T Consensus 2 ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~ 51 (88)
T 3v9r_B 2 LSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKD 51 (88)
T ss_dssp CCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 688888999995 467789999999999999999999999999876544
No 50
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=71.29 E-value=5.2 Score=28.94 Aligned_cols=44 Identities=25% Similarity=0.237 Sum_probs=35.5
Q ss_pred HHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028837 112 GRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAK 156 (203)
Q Consensus 112 ARVKrIMK~DpDv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~ 156 (203)
.||..||+- .++..++.|++.+||-|||.=+..|...-...|++
T Consensus 10 kri~~I~~k-~gl~~~~~dv~~~iS~a~qeRLr~llekl~~~a~~ 53 (75)
T 1h3o_A 10 RRILEIGKK-HGITELHPDVVSYVSHATQQRLQNLVEKISETAQQ 53 (75)
T ss_dssp HHHHHHHHT-TTCCEECTTHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHh-cCCCcCChhHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 688889965 88999999999999999999999888887666644
No 51
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=62.67 E-value=6.3 Score=31.96 Aligned_cols=85 Identities=9% Similarity=0.068 Sum_probs=58.0
Q ss_pred CCChHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce--------EE----------
Q 028837 108 NFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL--------VV---------- 169 (203)
Q Consensus 108 ~LPlARVKrIMK~DpDv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL--------aV---------- 169 (203)
.+|++++.++++.-.++...-.++--+... ++-=+-+|..-|...|..++|..|.+.|| .+
T Consensus 2 vm~~~~~e~lFR~aa~LdvdK~d~~r~~d~-V~~Kl~DLl~va~~~Ak~n~RdvI~~~DLPITkGlqesi~~F~~lde~i 80 (148)
T 1wwi_A 2 LMKVAEFERLFRQAAGLDVDKNDLKRVSDF-LRNKLYDLLAVAERNAKYNGRDLIFEPDLPIAKGLQETLQEFRRMDTAL 80 (148)
T ss_dssp CSCHHHHHHHHHHHHCCCCCGGGHHHHHHH-HHHHHHHHHHHHHHHHHHTTCSEECGGGSCCCHHHHHHHHHHHTTCCCC
T ss_pred cCCHHHHHHHHHHHhccCCcHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCeeccccCCccHHHHHHHHHHHHccccc
Confidence 478899999999766555555555554444 44446678888999999999999999999 11
Q ss_pred eeCCcccccccccCCcccHHHHHH
Q 028837 170 SEQSKYDFLSDYVPEKIKAEDALA 193 (203)
Q Consensus 170 ~~~~~fdFL~DIVP~ki~l~d~l~ 193 (203)
.-.+-++||..+.|...++++-++
T Consensus 81 el~pil~~la~~PPld~~~~~e~e 104 (148)
T 1wwi_A 81 ELKPVLDALAALPPLDLEVAEDVR 104 (148)
T ss_dssp CHHHHHHHHHTSCCCSSEECHHHH
T ss_pred chHHHHHHHHhCCCCCCChhHHHH
Confidence 222335566666666655554444
No 52
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=37.65 E-value=31 Score=28.53 Aligned_cols=86 Identities=9% Similarity=0.120 Sum_probs=59.6
Q ss_pred CCCCChHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCce--------E---------
Q 028837 106 VCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHL--------V--------- 168 (203)
Q Consensus 106 ~~~LPlARVKrIMK~DpDv~~IS~EA~~lIaKAtELFIq~La~~A~~~A~~~kRKTL~y~DL--------a--------- 168 (203)
-..+|++++.+|++.-.++...-.++--+. .-++-=+-+|..-|...|..++|..|.+.|| .
T Consensus 24 m~vmg~~kferlFR~aagLDvdK~d~kr~~-d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DLPITKGlqEsi~~Fr~lde 102 (171)
T 1r4v_A 24 LRPKGFDKLDHYFRTELDIDLTDETIELLL-NSVKAAFGKLFYGAEQRARWNGRDFIALADLNITKALEEHIKNFQKIEQ 102 (171)
T ss_dssp TSCTTHHHHHHHHHHHHCCCCCHHHHHHHH-HHHHHHHHHTTTTHHHHHHHTTCSEECGGGSCCCHHHHHHHHHHHTCCS
T ss_pred HhcCChHHHHHHHHHHhccCCcHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCeeccccCCccHHHHHHHHHHHhccc
Confidence 448899999999997666555555554444 4444446778888999999999999999999 1
Q ss_pred -EeeCCcccccccccCCcccHHHHH
Q 028837 169 -VSEQSKYDFLSDYVPEKIKAEDAL 192 (203)
Q Consensus 169 -V~~~~~fdFL~DIVP~ki~l~d~l 192 (203)
|.-.+-++||..+.|...++++-+
T Consensus 103 ~iel~pIL~~la~~PPld~~l~ee~ 127 (171)
T 1r4v_A 103 DMGVDELLEYIAFIPPVEMNVGEDL 127 (171)
T ss_dssp CCSHHHHHHHHTCCCSCSSEECHHH
T ss_pred ccchHHHHHHHHhCCCCCCChhHHH
Confidence 122234566666666665554443
No 53
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=34.81 E-value=90 Score=20.01 Aligned_cols=40 Identities=13% Similarity=0.186 Sum_probs=36.3
Q ss_pred HHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028837 113 RIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYE 152 (203)
Q Consensus 113 RVKrIMK~DpDv~~IS~EA~~lIaKAtELFIq~La~~A~~ 152 (203)
-|+.+|=.-.|+..-..|++.+|-.-+-.||..|+..|.+
T Consensus 5 ei~~mMy~fGD~~~P~~ETv~llEeiV~~~i~~l~~~A~~ 44 (45)
T 1bh9_A 5 ELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMS 44 (45)
T ss_dssp HHHHHHHHTTSCSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4788899899999999999999999999999999998865
No 54
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=22.13 E-value=42 Score=22.49 Aligned_cols=36 Identities=8% Similarity=0.198 Sum_probs=30.0
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCccccCce
Q 028837 132 VFLVNKATDKF----LEQFCEDAYECCAKDRKKSLAYKHL 167 (203)
Q Consensus 132 ~~lIaKAtELF----Iq~La~~A~~~A~~~kRKTL~y~DL 167 (203)
+..++..|+=| |..|+.+|...|...++..|+..|+
T Consensus 27 l~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~ 66 (78)
T 3kw6_A 27 LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDF 66 (78)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHH
Confidence 55667777766 8889999999999988888988888
Done!