Query 028838
Match_columns 203
No_of_seqs 170 out of 1273
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 03:20:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028838.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028838hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0538 Glycolate oxidase [Ene 100.0 8.1E-60 1.7E-64 411.9 14.9 169 35-203 1-170 (363)
2 PLN02493 probable peroxisomal 100.0 5E-58 1.1E-62 414.1 17.5 170 34-203 2-171 (367)
3 PLN02535 glycolate oxidase 100.0 6E-58 1.3E-62 413.5 17.5 172 32-203 2-173 (364)
4 PRK11197 lldD L-lactate dehydr 100.0 1.7E-57 3.6E-62 412.5 17.1 170 34-203 2-171 (381)
5 cd04736 MDH_FMN Mandelate dehy 100.0 9.2E-57 2E-61 405.2 16.0 164 39-203 1-164 (361)
6 cd03332 LMO_FMN L-Lactate 2-mo 100.0 1.5E-56 3.3E-61 406.6 17.1 169 35-203 18-187 (383)
7 TIGR02708 L_lactate_ox L-lacta 100.0 1.7E-56 3.8E-61 404.2 17.2 170 34-203 12-182 (367)
8 cd04737 LOX_like_FMN L-Lactate 100.0 4.7E-55 1E-59 393.4 16.6 170 34-203 4-174 (351)
9 cd02922 FCB2_FMN Flavocytochro 100.0 2.2E-52 4.8E-57 375.3 16.9 165 39-203 1-167 (344)
10 PF01070 FMN_dh: FMN-dependent 100.0 5.1E-49 1.1E-53 355.0 12.3 159 45-203 1-159 (356)
11 PLN02979 glycolate oxidase 100.0 2E-42 4.4E-47 311.4 12.9 128 76-203 43-170 (366)
12 COG1304 idi Isopentenyl diphos 100.0 1.2E-36 2.6E-41 274.7 9.2 161 38-203 1-161 (360)
13 cd02809 alpha_hydroxyacid_oxid 100.0 3.9E-34 8.4E-39 252.1 17.1 158 39-196 1-158 (299)
14 cd02811 IDI-2_FMN Isopentenyl- 99.4 1.2E-12 2.5E-17 117.3 7.6 119 69-190 17-150 (326)
15 PRK05437 isopentenyl pyrophosp 99.3 3.5E-12 7.6E-17 115.4 7.2 116 71-190 27-158 (352)
16 TIGR02151 IPP_isom_2 isopenten 99.2 4.5E-11 9.8E-16 107.3 8.2 119 73-191 22-152 (333)
17 PRK05458 guanosine 5'-monophos 98.4 5.5E-07 1.2E-11 81.1 6.8 106 73-188 6-119 (326)
18 TIGR01306 GMP_reduct_2 guanosi 98.4 1.6E-06 3.5E-11 77.9 8.5 106 73-191 3-117 (321)
19 cd00381 IMPDH IMPDH: The catal 97.3 0.0009 1.9E-08 60.2 8.1 106 73-188 3-114 (325)
20 PRK08649 inosine 5-monophospha 97.3 0.00076 1.6E-08 61.8 7.7 116 73-195 17-172 (368)
21 TIGR01304 IMP_DH_rel_2 IMP deh 94.8 0.1 2.2E-06 48.0 7.2 61 73-139 14-75 (369)
22 PRK06843 inosine 5-monophospha 94.5 0.31 6.6E-06 45.5 9.6 70 73-150 11-82 (404)
23 PF00478 IMPDH: IMP dehydrogen 93.8 0.35 7.6E-06 44.3 8.4 107 73-188 4-128 (352)
24 PLN02495 oxidoreductase, actin 93.2 0.95 2E-05 41.9 10.4 101 87-193 6-153 (385)
25 cd04739 DHOD_like Dihydroorota 92.7 1.1 2.3E-05 40.3 9.7 38 153-191 99-136 (325)
26 cd02940 DHPD_FMN Dihydropyrimi 92.6 1.4 3.1E-05 38.8 10.3 40 154-193 100-139 (299)
27 TIGR01305 GMP_reduct_1 guanosi 92.1 0.71 1.5E-05 42.1 7.8 107 73-188 9-129 (343)
28 TIGR00737 nifR3_yhdG putative 91.9 1.4 2.9E-05 39.3 9.4 88 98-192 3-100 (319)
29 PRK07259 dihydroorotate dehydr 91.9 1.9 4.2E-05 37.8 10.2 96 91-193 1-131 (301)
30 cd04740 DHOD_1B_like Dihydroor 91.3 3.2 7E-05 36.2 11.0 42 154-196 90-131 (296)
31 cd02810 DHOD_DHPD_FMN Dihydroo 90.9 2.3 5.1E-05 36.9 9.6 41 154-195 99-139 (289)
32 cd04738 DHOD_2_like Dihydrooro 90.7 5.1 0.00011 35.9 11.9 47 63-109 9-56 (327)
33 PRK05096 guanosine 5'-monophos 90.7 2.1 4.6E-05 39.2 9.3 70 73-150 10-86 (346)
34 PRK05286 dihydroorotate dehydr 89.0 11 0.00024 34.0 12.8 99 87-193 44-182 (344)
35 TIGR01037 pyrD_sub1_fam dihydr 88.6 6.6 0.00014 34.3 10.7 95 92-193 1-131 (300)
36 PRK08318 dihydropyrimidine deh 87.0 8 0.00017 35.7 10.7 39 154-192 100-138 (420)
37 PRK07565 dihydroorotate dehydr 85.7 8.2 0.00018 34.6 9.8 38 153-191 101-138 (334)
38 PRK02506 dihydroorotate dehydr 85.6 10 0.00023 33.7 10.4 96 91-193 1-132 (310)
39 cd04730 NPD_like 2-Nitropropan 85.1 3.9 8.5E-05 34.1 7.1 80 102-188 2-88 (236)
40 PTZ00314 inosine-5'-monophosph 83.8 5.3 0.00012 38.1 8.1 109 73-189 19-135 (495)
41 TIGR03151 enACPred_II putative 83.2 4.9 0.00011 35.9 7.2 83 95-188 6-95 (307)
42 cd04722 TIM_phosphate_binding 82.9 14 0.00031 28.6 9.2 74 119-192 12-96 (200)
43 TIGR01858 tag_bisphos_ald clas 80.0 4.4 9.5E-05 36.0 5.7 67 117-187 25-102 (282)
44 PRK05567 inosine 5'-monophosph 79.1 5.5 0.00012 37.7 6.4 107 73-187 10-124 (486)
45 PRK09195 gatY tagatose-bisphos 78.9 4.6 9.9E-05 36.0 5.4 67 117-187 27-104 (284)
46 cd00947 TBP_aldolase_IIB Tagat 78.8 5.4 0.00012 35.4 5.8 68 117-188 22-100 (276)
47 PRK12738 kbaY tagatose-bisphos 78.2 5.5 0.00012 35.5 5.7 67 117-187 27-104 (286)
48 COG2185 Sbm Methylmalonyl-CoA 78.1 18 0.00039 29.2 8.1 81 105-188 15-99 (143)
49 TIGR03455 HisG_C-term ATP phos 77.8 13 0.00029 27.9 6.9 55 133-187 29-94 (100)
50 PRK12737 gatY tagatose-bisphos 77.3 6.1 0.00013 35.1 5.8 67 117-187 27-104 (284)
51 cd00951 KDGDH 5-dehydro-4-deox 77.0 18 0.00039 31.7 8.7 84 103-188 5-102 (289)
52 PRK08227 autoinducer 2 aldolas 77.0 13 0.00029 32.7 7.8 67 122-188 161-227 (264)
53 cd02808 GltS_FMN Glutamate syn 76.1 8.9 0.00019 35.4 6.7 48 100-149 75-122 (392)
54 PRK12857 fructose-1,6-bisphosp 75.4 7.1 0.00015 34.7 5.7 67 117-187 27-104 (284)
55 PRK10415 tRNA-dihydrouridine s 75.2 18 0.00038 32.5 8.2 88 98-192 5-102 (321)
56 PRK03620 5-dehydro-4-deoxygluc 75.1 21 0.00046 31.5 8.7 84 103-188 12-109 (303)
57 PF08029 HisG_C: HisG, C-termi 74.3 3.9 8.4E-05 29.3 3.0 49 139-187 11-70 (75)
58 PF01116 F_bP_aldolase: Fructo 73.8 3.9 8.5E-05 36.3 3.6 66 119-188 28-104 (287)
59 PLN02274 inosine-5'-monophosph 73.5 18 0.00039 34.7 8.2 106 73-189 23-139 (505)
60 PRK07807 inosine 5-monophospha 73.1 14 0.00029 35.3 7.3 104 73-187 14-126 (479)
61 TIGR00167 cbbA ketose-bisphosp 72.7 12 0.00026 33.3 6.4 68 117-188 27-108 (288)
62 PF01645 Glu_synthase: Conserv 72.4 3.3 7.2E-05 38.2 2.9 40 100-140 63-102 (368)
63 TIGR01302 IMP_dehydrog inosine 72.2 17 0.00037 34.1 7.7 109 73-189 3-119 (450)
64 PRK05835 fructose-bisphosphate 71.8 11 0.00023 34.1 5.9 68 117-188 26-105 (307)
65 PRK08185 hypothetical protein; 71.5 11 0.00024 33.5 5.9 67 117-187 22-98 (283)
66 PRK06801 hypothetical protein; 70.9 11 0.00025 33.4 5.9 66 117-186 27-103 (286)
67 PRK07998 gatY putative fructos 70.3 11 0.00024 33.5 5.7 66 118-187 28-104 (283)
68 PRK03170 dihydrodipicolinate s 70.0 38 0.00083 29.4 9.0 85 103-188 6-104 (292)
69 TIGR01303 IMP_DH_rel_1 IMP deh 69.9 24 0.00053 33.5 8.2 70 73-151 13-84 (475)
70 PF04028 DUF374: Domain of unk 69.9 34 0.00073 24.3 7.1 56 117-196 19-74 (74)
71 PRK10550 tRNA-dihydrouridine s 69.5 38 0.00083 30.3 9.0 38 154-192 63-100 (312)
72 PRK07119 2-ketoisovalerate fer 68.3 20 0.00043 32.6 7.0 69 118-189 7-80 (352)
73 PRK06806 fructose-bisphosphate 67.6 15 0.00033 32.5 5.9 34 127-160 69-103 (281)
74 cd08585 GDPD_like_3 Glyceropho 67.2 18 0.00039 30.8 6.2 27 167-193 195-222 (237)
75 COG2070 Dioxygenases related t 66.8 68 0.0015 29.1 10.1 114 51-186 37-153 (336)
76 TIGR03884 sel_bind_Methan sele 65.4 8.7 0.00019 27.6 3.2 26 166-191 28-54 (74)
77 TIGR01521 FruBisAldo_II_B fruc 65.3 17 0.00036 33.4 5.9 68 117-188 25-104 (347)
78 cd04741 DHOD_1A_like Dihydroor 64.6 53 0.0011 28.9 8.8 92 94-193 1-132 (294)
79 PRK07709 fructose-bisphosphate 63.7 23 0.0005 31.5 6.3 68 117-188 27-108 (285)
80 PRK11815 tRNA-dihydrouridine s 63.3 54 0.0012 29.5 8.8 90 98-194 6-104 (333)
81 smart00481 POLIIIAc DNA polyme 62.7 10 0.00022 25.4 3.2 23 168-190 16-38 (67)
82 PRK13399 fructose-1,6-bisphosp 61.9 21 0.00047 32.7 5.9 68 117-188 27-106 (347)
83 PRK08610 fructose-bisphosphate 61.5 23 0.00051 31.5 6.0 67 117-187 27-107 (286)
84 cd02810 DHOD_DHPD_FMN Dihydroo 61.4 89 0.0019 26.9 9.6 82 102-187 98-196 (289)
85 PRK01130 N-acetylmannosamine-6 61.1 33 0.00071 28.5 6.6 69 121-192 25-98 (221)
86 PLN02826 dihydroorotate dehydr 61.0 19 0.0004 33.7 5.5 46 62-109 46-91 (409)
87 TIGR03249 KdgD 5-dehydro-4-deo 60.9 65 0.0014 28.2 8.7 84 103-188 10-107 (296)
88 PRK13397 3-deoxy-7-phosphohept 60.7 26 0.00056 30.7 6.0 41 109-150 57-97 (250)
89 PF03060 NMO: Nitronate monoox 60.4 87 0.0019 28.0 9.5 34 101-140 10-43 (330)
90 PRK12595 bifunctional 3-deoxy- 60.3 22 0.00048 32.6 5.8 33 119-151 169-201 (360)
91 TIGR00683 nanA N-acetylneurami 59.4 99 0.0021 27.1 9.6 85 103-188 5-104 (290)
92 PRK11081 tRNA guanosine-2'-O-m 59.2 49 0.0011 28.5 7.4 74 113-189 25-99 (229)
93 PRK09196 fructose-1,6-bisphosp 58.6 26 0.00056 32.2 5.8 68 117-188 27-106 (347)
94 PRK08366 vorA 2-ketoisovalerat 58.3 41 0.00088 31.2 7.2 66 119-187 7-79 (390)
95 cd08612 GDPD_GDE4 Glycerophosp 57.4 27 0.00058 30.7 5.7 25 168-192 249-273 (300)
96 TIGR00290 MJ0570_dom MJ0570-re 57.2 90 0.0019 26.8 8.6 129 55-194 5-148 (223)
97 cd08600 GDPD_EcGlpQ_like Glyce 56.4 60 0.0013 29.0 7.8 24 170-193 266-289 (318)
98 PRK08673 3-deoxy-7-phosphohept 56.4 32 0.00069 31.4 6.0 34 118-151 143-176 (335)
99 PF00701 DHDPS: Dihydrodipicol 56.1 1.1E+02 0.0024 26.4 9.3 84 104-188 7-104 (289)
100 PF05226 CHASE2: CHASE2 domain 55.8 15 0.00033 32.0 3.8 32 162-193 59-90 (310)
101 cd08573 GDPD_GDE1 Glycerophosp 55.4 36 0.00077 29.3 6.0 27 167-193 215-241 (258)
102 PRK07084 fructose-bisphosphate 55.3 28 0.00061 31.6 5.5 68 117-188 33-116 (321)
103 cd08601 GDPD_SaGlpQ_like Glyce 55.3 52 0.0011 27.9 6.9 24 168-191 206-229 (256)
104 PRK09627 oorA 2-oxoglutarate-a 55.1 45 0.00098 30.7 6.9 66 119-187 7-77 (375)
105 PRK00489 hisG ATP phosphoribos 55.1 46 0.001 29.0 6.7 49 139-187 221-280 (287)
106 cd08559 GDPD_periplasmic_GlpQ_ 54.9 42 0.0009 29.5 6.4 21 170-190 246-266 (296)
107 cd00950 DHDPS Dihydrodipicolin 54.6 81 0.0017 27.2 8.1 84 103-187 5-102 (284)
108 cd00408 DHDPS-like Dihydrodipi 53.8 92 0.002 26.7 8.3 84 103-187 2-99 (281)
109 TIGR00674 dapA dihydrodipicoli 53.7 87 0.0019 27.2 8.2 85 103-188 3-101 (285)
110 PRK13396 3-deoxy-7-phosphohept 53.6 32 0.00069 31.6 5.6 41 110-151 144-184 (352)
111 cd08568 GDPD_TmGDE_like Glycer 53.6 43 0.00094 27.9 6.1 22 170-191 184-205 (226)
112 PLN02417 dihydrodipicolinate s 53.5 1.1E+02 0.0023 26.7 8.7 84 104-188 7-104 (280)
113 PRK13398 3-deoxy-7-phosphohept 53.0 45 0.00097 29.3 6.3 40 111-151 71-110 (266)
114 TIGR00289 conserved hypothetic 52.7 35 0.00075 29.3 5.4 126 55-194 5-147 (222)
115 COG1606 ATP-utilizing enzymes 52.7 15 0.00032 32.6 3.1 23 177-199 39-61 (269)
116 PRK12855 hypothetical protein; 52.5 18 0.00039 27.5 3.2 28 166-193 59-87 (103)
117 cd00945 Aldolase_Class_I Class 52.2 1.1E+02 0.0023 24.0 8.0 71 117-189 11-87 (201)
118 cd04739 DHOD_like Dihydroorota 51.6 1.2E+02 0.0025 27.2 8.9 81 102-188 99-196 (325)
119 COG1830 FbaB DhnA-type fructos 51.1 70 0.0015 28.4 7.1 85 99-187 140-237 (265)
120 TIGR02313 HpaI-NOT-DapA 2,4-di 51.0 1E+02 0.0022 27.0 8.3 85 103-188 5-103 (294)
121 cd08205 RuBisCO_IV_RLP Ribulos 50.8 1.4E+02 0.003 27.4 9.3 92 96-189 124-232 (367)
122 KOG1436 Dihydroorotate dehydro 50.4 8.5 0.00018 35.3 1.3 46 62-109 56-101 (398)
123 PF01906 YbjQ_1: Putative heav 50.3 20 0.00044 26.8 3.2 27 166-192 59-86 (105)
124 PRK07315 fructose-bisphosphate 50.2 64 0.0014 28.7 6.9 64 119-187 29-106 (293)
125 PRK02877 hypothetical protein; 50.1 20 0.00044 27.3 3.2 29 166-194 59-88 (106)
126 PRK09622 porA pyruvate flavodo 49.1 66 0.0014 29.9 7.0 67 118-187 13-86 (407)
127 PRK08659 2-oxoglutarate ferred 48.9 50 0.0011 30.3 6.2 67 118-187 7-78 (376)
128 TIGR01859 fruc_bis_ald_ fructo 48.4 48 0.001 29.3 5.8 13 169-181 117-129 (282)
129 TIGR00742 yjbN tRNA dihydrouri 47.2 1.3E+02 0.0027 27.1 8.3 83 104-193 2-93 (318)
130 PRK12856 hypothetical protein; 47.2 24 0.00052 26.8 3.2 28 166-193 59-87 (103)
131 PF01068 DNA_ligase_A_M: ATP d 46.6 63 0.0014 26.0 5.9 43 154-196 150-194 (202)
132 PRK04147 N-acetylneuraminate l 46.3 1.3E+02 0.0029 26.2 8.3 85 103-188 8-107 (293)
133 COG0393 Uncharacterized conser 46.3 25 0.00053 27.1 3.1 29 166-194 59-88 (108)
134 PRK01119 hypothetical protein; 46.0 26 0.00056 26.7 3.2 29 166-194 59-88 (106)
135 PLN02858 fructose-bisphosphate 45.9 46 0.001 35.9 6.1 62 122-187 1128-1199(1378)
136 PF03599 CdhD: CO dehydrogenas 45.5 95 0.0021 29.0 7.4 86 101-196 97-185 (386)
137 cd04795 SIS SIS domain. SIS (S 45.2 95 0.0021 21.0 6.9 35 153-187 47-81 (87)
138 PRK11858 aksA trans-homoaconit 45.2 1.7E+02 0.0037 26.7 9.1 30 25-60 17-46 (378)
139 TIGR01361 DAHP_synth_Bsub phos 45.1 68 0.0015 27.9 6.1 70 118-187 75-166 (260)
140 cd07896 Adenylation_kDNA_ligas 45.0 96 0.0021 24.7 6.6 42 157-198 125-167 (174)
141 TIGR03679 arCOG00187 arCOG0018 44.7 78 0.0017 26.6 6.3 24 171-194 126-149 (218)
142 PRK08367 porA pyruvate ferredo 44.4 1E+02 0.0023 28.5 7.6 66 119-187 8-80 (394)
143 COG2121 Uncharacterized protei 44.1 1.2E+02 0.0026 26.1 7.2 23 117-140 77-99 (214)
144 PF06506 PrpR_N: Propionate ca 43.7 56 0.0012 26.3 5.1 80 99-185 50-130 (176)
145 cd01994 Alpha_ANH_like_IV This 43.0 57 0.0012 27.0 5.2 87 96-194 52-151 (194)
146 COG0329 DapA Dihydrodipicolina 43.0 1.6E+02 0.0034 26.1 8.2 84 103-187 9-106 (299)
147 PRK01217 hypothetical protein; 42.0 32 0.0007 26.6 3.2 29 166-194 66-95 (114)
148 PRK00967 hypothetical protein; 41.9 33 0.00071 26.0 3.2 29 166-194 59-88 (105)
149 COG1879 RbsB ABC-type sugar tr 41.8 1.7E+02 0.0037 25.2 8.2 72 120-192 51-128 (322)
150 cd06557 KPHMT-like Ketopantoat 41.8 91 0.002 27.2 6.4 23 165-187 153-178 (254)
151 PLN02775 Probable dihydrodipic 41.6 1.4E+02 0.003 26.7 7.6 75 64-141 24-113 (286)
152 PF01902 ATP_bind_4: ATP-bindi 41.3 42 0.0009 28.6 4.1 128 55-194 5-148 (218)
153 cd08580 GDPD_Rv2277c_like Glyc 40.9 36 0.00078 29.7 3.7 26 167-192 216-242 (263)
154 COG1030 NfeD Membrane-bound se 40.7 37 0.0008 32.2 4.0 28 166-193 42-69 (436)
155 cd02801 DUS_like_FMN Dihydrour 40.4 2.1E+02 0.0044 23.5 8.2 39 154-193 55-93 (231)
156 cd00954 NAL N-Acetylneuraminic 40.2 2.2E+02 0.0048 24.7 8.7 83 104-187 6-103 (288)
157 cd08574 GDPD_GDE_2_3_6 Glycero 40.2 71 0.0015 27.3 5.5 26 167-192 210-235 (252)
158 TIGR01036 pyrD_sub2 dihydrooro 40.2 39 0.00084 30.5 3.9 39 92-137 46-84 (335)
159 cd04742 NPD_FabD 2-Nitropropan 39.6 1.9E+02 0.0042 27.2 8.5 84 95-186 8-101 (418)
160 cd03377 TPP_PFOR_PNO Thiamine 39.2 88 0.0019 29.0 6.1 65 121-185 219-296 (365)
161 PF01180 DHO_dh: Dihydroorotat 39.1 24 0.00052 30.8 2.4 18 92-109 2-19 (295)
162 PF05036 SPOR: Sporulation rel 38.7 52 0.0011 21.7 3.6 29 156-184 5-33 (76)
163 TIGR02090 LEU1_arch isopropylm 37.7 2.1E+02 0.0045 26.0 8.3 28 164-192 138-165 (363)
164 cd05013 SIS_RpiR RpiR-like pro 37.5 1.6E+02 0.0035 21.4 6.9 38 153-190 60-97 (139)
165 PF02593 dTMP_synthase: Thymid 37.3 43 0.00092 28.8 3.6 34 164-197 60-93 (217)
166 PRK06806 fructose-bisphosphate 37.1 1.7E+02 0.0037 25.8 7.5 25 122-146 87-111 (281)
167 PLN02245 ATP phosphoribosyl tr 37.1 2.2E+02 0.0047 26.8 8.4 59 129-187 299-381 (403)
168 TIGR03336 IOR_alpha indolepyru 36.7 1.1E+02 0.0024 29.7 6.7 66 119-188 6-77 (595)
169 TIGR03151 enACPred_II putative 36.4 1.2E+02 0.0025 27.1 6.4 59 122-188 77-137 (307)
170 cd08555 PI-PLCc_GDPD_SF Cataly 36.2 59 0.0013 26.1 4.1 25 166-190 135-159 (179)
171 PRK03732 hypothetical protein; 35.7 47 0.001 25.7 3.2 29 166-194 66-95 (114)
172 TIGR00284 dihydropteroate synt 35.4 1.4E+02 0.0031 28.7 7.1 65 122-187 218-286 (499)
173 cd08604 GDPD_SHV3_repeat_2 Gly 35.3 1.4E+02 0.003 26.4 6.6 22 170-191 240-261 (300)
174 cd00946 FBP_aldolase_IIA Class 34.7 91 0.002 28.6 5.4 23 117-139 25-47 (345)
175 TIGR03710 OAFO_sf 2-oxoacid:ac 34.6 1.1E+02 0.0023 29.7 6.3 67 118-187 196-267 (562)
176 cd08563 GDPD_TtGDE_like Glycer 34.0 1.5E+02 0.0033 24.5 6.4 24 168-191 188-211 (230)
177 PRK07565 dihydroorotate dehydr 33.9 3.4E+02 0.0074 24.2 9.0 81 101-187 100-197 (334)
178 cd00453 FTBP_aldolase_II Fruct 33.7 1E+02 0.0022 28.4 5.5 68 117-188 22-129 (340)
179 PRK09197 fructose-bisphosphate 33.5 83 0.0018 29.0 5.0 24 116-139 29-52 (350)
180 COG3092 Uncharacterized protei 33.3 38 0.00083 27.0 2.4 41 15-55 105-147 (149)
181 COG0040 HisG ATP phosphoribosy 32.9 1.9E+02 0.0042 26.0 7.1 61 127-187 212-283 (290)
182 cd07901 Adenylation_DNA_ligase 32.8 1.4E+02 0.0031 24.5 6.0 37 162-198 161-199 (207)
183 PRK14582 pgaB outer membrane N 32.4 3E+02 0.0065 27.6 9.0 67 122-188 257-355 (671)
184 cd08564 GDPD_GsGDE_like Glycer 32.3 2.7E+02 0.0058 23.8 7.8 22 166-187 209-230 (265)
185 KOG2550 IMP dehydrogenase/GMP 32.3 77 0.0017 30.2 4.6 113 72-192 30-150 (503)
186 cd04738 DHOD_2_like Dihydrooro 32.0 1.1E+02 0.0024 27.3 5.5 35 154-188 203-237 (327)
187 PRK05286 dihydroorotate dehydr 31.3 1.1E+02 0.0024 27.5 5.5 36 154-189 212-247 (344)
188 cd08606 GDPD_YPL110cp_fungi Gl 31.0 1.5E+02 0.0033 25.5 6.1 24 168-191 233-258 (286)
189 PRK11633 cell division protein 30.9 1.2E+02 0.0026 26.1 5.3 38 154-191 148-185 (226)
190 COG0107 HisF Imidazoleglycerol 30.8 1.7E+02 0.0038 25.7 6.2 67 122-192 64-133 (256)
191 cd04743 NPD_PKS 2-Nitropropane 30.7 2.1E+02 0.0045 26.0 7.0 58 122-187 72-130 (320)
192 cd03174 DRE_TIM_metallolyase D 30.6 3E+02 0.0064 23.0 7.7 24 167-190 115-138 (265)
193 cd08579 GDPD_memb_like Glycero 30.6 1.4E+02 0.0029 24.6 5.5 71 122-192 115-202 (220)
194 cd08609 GDPD_GDE3 Glycerophosp 29.9 94 0.002 27.9 4.7 72 120-192 172-257 (315)
195 cd08210 RLP_RrRLP Ribulose bis 29.7 4.4E+02 0.0096 24.2 9.7 116 74-191 94-229 (364)
196 cd08567 GDPD_SpGDE_like Glycer 29.7 2E+02 0.0042 24.1 6.5 24 168-191 219-242 (263)
197 cd07372 2A5CPDO_B The beta sub 29.6 1.6E+02 0.0034 26.2 6.0 69 120-188 38-120 (294)
198 cd08571 GDPD_SHV3_plant Glycer 29.5 3E+02 0.0064 24.3 7.8 22 171-192 242-263 (302)
199 TIGR01361 DAHP_synth_Bsub phos 29.4 1.6E+02 0.0034 25.7 5.9 75 122-198 122-210 (260)
200 TIGR01036 pyrD_sub2 dihydrooro 29.3 1.2E+02 0.0025 27.4 5.2 34 154-187 211-244 (335)
201 PF04217 DUF412: Protein of un 29.2 52 0.0011 26.6 2.6 42 14-55 99-142 (143)
202 cd04729 NanE N-acetylmannosami 29.0 1.8E+02 0.004 24.0 6.1 65 122-187 30-99 (219)
203 PF01113 DapB_N: Dihydrodipico 28.9 60 0.0013 24.6 2.9 42 116-157 75-118 (124)
204 PF01207 Dus: Dihydrouridine s 28.6 1.5E+02 0.0032 26.3 5.7 30 166-195 137-166 (309)
205 cd05710 SIS_1 A subgroup of th 28.5 1.2E+02 0.0025 22.7 4.4 36 154-189 48-83 (120)
206 COG4252 Predicted transmembran 28.3 73 0.0016 29.8 3.8 31 162-192 78-108 (400)
207 COG2102 Predicted ATPases of P 28.2 1.2E+02 0.0026 26.2 4.8 95 94-195 51-150 (223)
208 KOG2794 Delta-aminolevulinic a 28.1 92 0.002 28.1 4.2 48 144-192 216-266 (340)
209 PRK01816 hypothetical protein; 27.9 73 0.0016 25.7 3.2 41 15-55 99-141 (143)
210 COG1456 CdhE CO dehydrogenase/ 27.8 3.7E+02 0.008 25.3 8.1 79 117-195 144-245 (467)
211 cd03317 NAAAR N-acylamino acid 27.6 4.2E+02 0.009 23.5 8.5 63 121-184 217-283 (354)
212 COG0167 PyrD Dihydroorotate de 27.5 1.6E+02 0.0034 26.7 5.7 23 165-187 171-193 (310)
213 PLN02495 oxidoreductase, actin 27.5 4.9E+02 0.011 24.1 9.1 84 99-187 109-214 (385)
214 PRK15424 propionate catabolism 27.4 3.1E+02 0.0067 26.6 8.0 138 35-186 19-161 (538)
215 cd08570 GDPD_YPL206cp_fungi Gl 27.2 2.2E+02 0.0048 23.7 6.3 25 168-192 192-216 (234)
216 cd08605 GDPD_GDE5_like_1_plant 27.1 1.9E+02 0.0042 24.8 6.1 24 169-192 239-264 (282)
217 COG2355 Zn-dependent dipeptida 27.0 1.2E+02 0.0027 27.4 4.9 56 122-180 152-215 (313)
218 COG2168 DsrH Uncharacterized c 27.0 46 0.001 25.1 1.8 38 13-54 58-96 (96)
219 cd00958 DhnA Class I fructose- 26.6 3.7E+02 0.0081 22.3 8.6 64 125-189 149-216 (235)
220 cd00953 KDG_aldolase KDG (2-ke 26.6 4.2E+02 0.0092 22.9 8.8 81 106-188 8-99 (279)
221 cd02940 DHPD_FMN Dihydropyrimi 26.4 1.6E+02 0.0034 25.8 5.5 31 154-186 169-199 (299)
222 COG1737 RpiR Transcriptional r 26.3 2.5E+02 0.0055 24.4 6.7 67 124-190 148-214 (281)
223 cd08583 PI-PLCc_GDPD_SF_unchar 26.1 1.6E+02 0.0034 24.6 5.2 26 167-192 192-217 (237)
224 TIGR01037 pyrD_sub1_fam dihydr 26.1 1.7E+02 0.0037 25.4 5.6 25 163-187 165-189 (300)
225 TIGR02814 pfaD_fam PfaD family 26.0 3.7E+02 0.008 25.6 8.1 84 95-186 13-106 (444)
226 TIGR02494 PFLE_PFLC glycyl-rad 26.0 4.2E+02 0.0092 22.7 8.9 77 111-187 133-221 (295)
227 COG3147 DedD Uncharacterized p 26.0 62 0.0013 28.0 2.6 41 154-195 150-190 (226)
228 COG0826 Collagenase and relate 25.6 2.1E+02 0.0045 26.1 6.2 68 117-187 11-99 (347)
229 COG1180 PflA Pyruvate-formate 25.6 4.4E+02 0.0096 22.8 9.4 85 116-201 96-193 (260)
230 TIGR02660 nifV_homocitr homoci 25.5 5.1E+02 0.011 23.5 8.9 30 164-194 139-168 (365)
231 COG3345 GalA Alpha-galactosida 25.4 1.2E+02 0.0026 30.0 4.7 44 156-201 298-341 (687)
232 PRK10864 putative methyltransf 25.3 1.7E+02 0.0037 26.9 5.5 57 131-187 173-230 (346)
233 cd00308 enolase_like Enolase-s 25.2 3.9E+02 0.0085 22.1 7.7 63 122-185 135-201 (229)
234 cd04728 ThiG Thiazole synthase 25.2 70 0.0015 28.1 2.9 46 154-199 90-142 (248)
235 cd07939 DRE_TIM_NifV Streptomy 25.1 4.3E+02 0.0093 22.5 8.8 66 124-189 51-132 (259)
236 PF13223 DUF4031: Protein of u 24.9 48 0.001 24.3 1.6 42 142-183 20-66 (83)
237 TIGR01520 FruBisAldo_II_A fruc 24.8 1.7E+02 0.0037 27.1 5.4 23 117-139 36-58 (357)
238 PF09872 DUF2099: Uncharacteri 24.8 1.2E+02 0.0026 26.7 4.3 56 139-199 121-181 (258)
239 cd08575 GDPD_GDE4_like Glycero 24.7 1.8E+02 0.0038 25.0 5.4 25 168-192 219-243 (264)
240 PRK09140 2-dehydro-3-deoxy-6-p 24.2 2E+02 0.0044 24.0 5.5 15 35-49 18-32 (206)
241 cd02809 alpha_hydroxyacid_oxid 24.1 3.2E+02 0.0069 23.9 7.0 61 121-187 131-200 (299)
242 cd05014 SIS_Kpsf KpsF-like pro 23.9 2.9E+02 0.0063 20.2 5.9 33 157-189 51-83 (128)
243 COG0167 PyrD Dihydroorotate de 23.8 85 0.0018 28.4 3.2 99 91-194 1-137 (310)
244 PF07338 DUF1471: Protein of u 23.7 1.3E+02 0.0029 19.9 3.5 22 166-187 18-39 (56)
245 PRK09454 ugpQ cytoplasmic glyc 23.6 1.2E+02 0.0025 25.8 4.0 26 167-192 196-221 (249)
246 cd05008 SIS_GlmS_GlmD_1 SIS (S 23.5 1.2E+02 0.0026 22.2 3.7 30 160-189 53-82 (126)
247 cd00952 CHBPH_aldolase Trans-o 23.5 5.2E+02 0.011 22.8 8.5 72 116-188 26-111 (309)
248 cd08581 GDPD_like_1 Glyceropho 23.3 2E+02 0.0044 24.1 5.4 23 171-193 190-212 (229)
249 cd04740 DHOD_1B_like Dihydroor 22.7 2.1E+02 0.0046 24.7 5.6 79 102-186 89-185 (296)
250 TIGR00393 kpsF KpsF/GutQ famil 22.4 1.9E+02 0.0041 24.3 5.0 36 153-188 47-82 (268)
251 KOG3111 D-ribulose-5-phosphate 22.3 95 0.0021 26.6 3.1 69 116-188 93-198 (224)
252 COG1591 Holliday junction reso 22.2 4E+02 0.0087 21.3 6.4 75 119-196 8-94 (137)
253 PF02225 PA: PA domain; Inter 22.0 85 0.0018 22.1 2.4 20 169-188 46-65 (101)
254 PRK07114 keto-hydroxyglutarate 21.8 2.2E+02 0.0047 24.4 5.2 126 14-162 5-140 (222)
255 COG4972 PilM Tfp pilus assembl 21.8 1.6E+02 0.0035 27.2 4.6 51 140-191 114-173 (354)
256 PRK11840 bifunctional sulfur c 21.7 76 0.0016 29.0 2.5 48 153-200 163-217 (326)
257 TIGR00736 nifR3_rel_arch TIM-b 21.6 2.6E+02 0.0057 24.0 5.7 28 165-194 146-173 (231)
258 cd08607 GDPD_GDE5 Glycerophosp 21.6 2.4E+02 0.0053 24.2 5.7 25 168-192 246-272 (290)
259 PF06414 Zeta_toxin: Zeta toxi 21.5 88 0.0019 25.4 2.7 28 164-191 103-130 (199)
260 COG3153 Predicted acetyltransf 21.5 1.5E+02 0.0033 24.4 4.1 29 166-194 94-122 (171)
261 PRK05198 2-dehydro-3-deoxyphos 21.5 1.5E+02 0.0032 26.3 4.2 44 109-152 58-101 (264)
262 cd03319 L-Ala-DL-Glu_epimerase 21.3 5.5E+02 0.012 22.3 8.2 63 122-185 218-284 (316)
263 PRK06852 aldolase; Validated 21.3 4.9E+02 0.011 23.5 7.6 92 99-190 164-268 (304)
264 PF07071 DUF1341: Protein of u 21.3 1.7E+02 0.0038 25.1 4.4 24 165-188 187-210 (218)
265 TIGR00035 asp_race aspartate r 21.1 1.4E+02 0.0029 25.1 3.9 57 130-193 32-88 (229)
266 TIGR03581 EF_0839 conserved hy 21.1 2.2E+02 0.0048 24.8 5.0 24 165-188 187-210 (236)
267 PRK11864 2-ketoisovalerate fer 21.1 4.7E+02 0.01 23.4 7.5 64 121-185 160-235 (300)
268 TIGR01362 KDO8P_synth 3-deoxy- 21.1 1.5E+02 0.0032 26.2 4.1 44 109-152 50-93 (258)
269 COG1533 SplB DNA repair photol 21.0 3.3E+02 0.0073 24.2 6.5 50 119-186 169-218 (297)
270 PRK05718 keto-hydroxyglutarate 21.0 3.2E+02 0.0069 23.1 6.1 55 123-186 78-134 (212)
271 PRK15408 autoinducer 2-binding 21.0 5.9E+02 0.013 22.5 8.9 69 118-190 39-115 (336)
272 cd04743 NPD_PKS 2-Nitropropane 20.9 4.6E+02 0.01 23.8 7.4 84 102-191 2-93 (320)
273 TIGR00381 cdhD CO dehydrogenas 20.8 5.3E+02 0.011 24.2 7.8 90 99-195 185-282 (389)
274 PLN02617 imidazole glycerol ph 20.8 1.3E+02 0.0028 29.3 4.0 32 156-187 423-458 (538)
275 PF03102 NeuB: NeuB family; I 20.8 1.1E+02 0.0024 26.4 3.3 30 121-151 102-131 (241)
276 PRK06552 keto-hydroxyglutarate 20.7 3.2E+02 0.0068 23.1 6.0 123 16-162 5-137 (213)
277 COG4130 Predicted sugar epimer 20.6 1.2E+02 0.0025 26.7 3.3 36 166-201 82-121 (272)
278 PF05853 DUF849: Prokaryotic p 20.4 1.8E+02 0.0039 25.4 4.6 85 84-178 101-196 (272)
279 COG2927 HolC DNA polymerase II 20.4 1.6E+02 0.0034 23.8 3.8 23 168-190 17-39 (144)
280 PRK06015 keto-hydroxyglutarate 20.1 2.5E+02 0.0055 23.6 5.2 38 122-162 87-125 (201)
No 1
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=100.00 E-value=8.1e-60 Score=411.92 Aligned_cols=169 Identities=62% Similarity=0.984 Sum_probs=166.3
Q ss_pred CCCHHHHHHHHHHhCChhhhhhhcCCccchhhHHHHHHHhhccccccccccCCCCCCcceeecCcccCcceEeccccchh
Q 028838 35 PVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHK 114 (203)
Q Consensus 35 ~~~~~d~~~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~af~~i~L~pRvL~dv~~~dtst~l~G~~~s~Pi~iaP~g~~~ 114 (203)
++|+.|||+.|+++||+.+|+||.|||+|++|+++|++||.||.|+||+|+||+.+|+||++||+++++||+|||||+|+
T Consensus 1 lv~~~dfe~~A~~~L~K~a~dyy~sgA~d~~Tl~~N~~AF~ri~~rPr~L~dVs~iD~sTtvlG~~i~~Pi~iapTa~qk 80 (363)
T KOG0538|consen 1 LVNVDDFEALAKQQLPKMAYDYYESGAEDQETLDENINAFRRILFRPRILRDVSKIDTSTTVLGQKISAPIMIAPTAMQK 80 (363)
T ss_pred CccHHHHHHHHHHhhhHHHHHHHhcCCcchhhHHHHHHHHHhhhccchhheecccccccceeccccccceeEEcchHHHh
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHhhcC-CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 028838 115 LANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCN-AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRL 193 (203)
Q Consensus 115 l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~~~~-~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p~~ 193 (203)
|+|||||.++||||+++|++|++||++++|+|||++++| +.+|||||+++||+++++|++|||++||+||+||||+|++
T Consensus 81 ma~pdGE~~taraa~~~~~~~i~Ss~at~S~EdI~~aap~~~rwfQLYvykdr~It~~Lv~raEk~GfkAlvlTvDtP~l 160 (363)
T KOG0538|consen 81 MAHPDGELATARAAQAAGTIMILSSWATCSVEDIASAAPPGIRWFQLYVYKDRDITEQLVKRAEKAGFKALVLTVDTPRL 160 (363)
T ss_pred ccCCcccHHHHHHHHhcCCcEEEechhcCCHHHHHhhCCCCcEEEEEEecCchHHHHHHHHHHHHcCceEEEEEeccccc
Confidence 999999999999999999999999999999999999995 8999999999999999999999999999999999999999
Q ss_pred CCchhhhhcC
Q 028838 194 GRREADIKNK 203 (203)
Q Consensus 194 g~Re~d~r~~ 203 (203)
|+|+.|+||+
T Consensus 161 G~R~~D~~n~ 170 (363)
T KOG0538|consen 161 GRRESDIKNK 170 (363)
T ss_pred cCchhhhhhc
Confidence 9999999985
No 2
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=100.00 E-value=5e-58 Score=414.06 Aligned_cols=170 Identities=60% Similarity=0.971 Sum_probs=166.8
Q ss_pred CCCCHHHHHHHHHHhCChhhhhhhcCCccchhhHHHHHHHhhccccccccccCCCCCCcceeecCcccCcceEeccccch
Q 028838 34 EPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALH 113 (203)
Q Consensus 34 ~~~~~~d~~~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~af~~i~L~pRvL~dv~~~dtst~l~G~~~s~Pi~iaP~g~~ 113 (203)
+++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+||+++||+|++||+++++||+|||+|++
T Consensus 2 ~~~~i~D~e~~Ar~~lp~~~~~y~~gga~de~t~~~N~~af~r~~l~PRvLrdv~~~d~~t~~lG~~~~~Pi~iAP~g~~ 81 (367)
T PLN02493 2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQ 81 (367)
T ss_pred ccCCHHHHHHHHHHhCCHHHHHHHccCcchhHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHhhcCCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 028838 114 KLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRL 193 (203)
Q Consensus 114 ~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~~~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p~~ 193 (203)
+|+||+||+++||||+++|++|++||++++|+|||+++.+++.|||||+++|+++++++|+||+++||+|||||||+|+.
T Consensus 82 ~l~hp~gE~a~AraA~~~gi~~~lSt~ss~slEeva~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~ 161 (367)
T PLN02493 82 KMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRL 161 (367)
T ss_pred hhcCCchHHHHHHHHHHcCCCeeecCcccCCHHHHHhcCCCCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCC
Confidence 99999999999999999999999999999999999988778899999999999999999999999999999999999999
Q ss_pred CCchhhhhcC
Q 028838 194 GRREADIKNK 203 (203)
Q Consensus 194 g~Re~d~r~~ 203 (203)
|+||+|+||+
T Consensus 162 G~R~~d~r~~ 171 (367)
T PLN02493 162 GRRESDIKNR 171 (367)
T ss_pred Ccchhhhccc
Confidence 9999999985
No 3
>PLN02535 glycolate oxidase
Probab=100.00 E-value=6e-58 Score=413.49 Aligned_cols=172 Identities=81% Similarity=1.220 Sum_probs=168.5
Q ss_pred CCCCCCHHHHHHHHHHhCChhhhhhhcCCccchhhHHHHHHHhhccccccccccCCCCCCcceeecCcccCcceEecccc
Q 028838 32 AAEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTA 111 (203)
Q Consensus 32 ~~~~~~~~d~~~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~af~~i~L~pRvL~dv~~~dtst~l~G~~~s~Pi~iaP~g 111 (203)
.++++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+||+++||+|+|||+++++||+|||+|
T Consensus 2 ~~~~~~i~d~~~~A~~~lp~~~~~Y~~gga~~e~t~~~N~~af~~~~l~Pr~L~dv~~~d~~t~~lG~~~~~P~~iaP~g 81 (364)
T PLN02535 2 ADEIVNVNEFQELAKQALPKMYYDFYAGGAEDQHTLKENVQAFRRITFRPRVLVDVSKIDMSTTILGYTISAPIMIAPTA 81 (364)
T ss_pred CcccCCHHHHHHHHHHhCCHHHHHHHhcCCcccHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHhhcCCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCC
Q 028838 112 LHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTP 191 (203)
Q Consensus 112 ~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~~~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p 191 (203)
+++++||+||+++||||+++|++|++||+|++|+|||+++.+++.|||||+++|+++++++|+||+++||+|||||||+|
T Consensus 82 ~~~l~hp~gE~a~AraA~~~g~~~~lSt~s~~slEeva~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p 161 (364)
T PLN02535 82 MHKLAHPEGEIATARAAAACNTIMVLSFMASCTVEEVASSCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVP 161 (364)
T ss_pred HhcccCcchHHHHHHHHHHcCCCeEecCcccCCHHHHHhcCCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCC
Confidence 99999999999999999999999999999999999999887789999999999999999999999999999999999999
Q ss_pred CCCCchhhhhcC
Q 028838 192 RLGRREADIKNK 203 (203)
Q Consensus 192 ~~g~Re~d~r~~ 203 (203)
+.|+||+|+|||
T Consensus 162 ~~g~R~~d~r~~ 173 (364)
T PLN02535 162 RLGRREADIKNK 173 (364)
T ss_pred CCCCchhhhhcC
Confidence 999999999986
No 4
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=1.7e-57 Score=412.53 Aligned_cols=170 Identities=34% Similarity=0.517 Sum_probs=166.9
Q ss_pred CCCCHHHHHHHHHHhCChhhhhhhcCCccchhhHHHHHHHhhccccccccccCCCCCCcceeecCcccCcceEeccccch
Q 028838 34 EPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALH 113 (203)
Q Consensus 34 ~~~~~~d~~~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~af~~i~L~pRvL~dv~~~dtst~l~G~~~s~Pi~iaP~g~~ 113 (203)
.++|++|||+.||++||+.+|+|+.||++||.|+++|+++|++|+|+||+|+|++++||+|+|||+++++||+|||+|++
T Consensus 2 ~~~~i~D~~~~Ar~~Lp~~~~~Y~~gga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pi~iAP~g~~ 81 (381)
T PRK11197 2 IISAASDYRAAAQRRLPPFLFHYIDGGAYAEYTLRRNVEDLADIALRQRVLKDMSDLSLETTLFGEKLSMPVALAPVGLT 81 (381)
T ss_pred ccCCHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcceecccccCCCCCCCceEECCcccccchhhChHHHh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHhhcCCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 028838 114 KLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRL 193 (203)
Q Consensus 114 ~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~~~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p~~ 193 (203)
+++||+||+++||||+++|++|++||+|++|+|||+++.+++.|||||+++|+++++++|+||+++||+|||||||+|+.
T Consensus 82 ~l~hp~gE~~~AraA~~~g~~~~lSt~ss~slEeia~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTVD~pv~ 161 (381)
T PRK11197 82 GMYARRGEVQAARAADAKGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVP 161 (381)
T ss_pred hccCCchHHHHHHHHHHcCCCEEeeCCCcCCHHHHHhccCCCeEEEEEecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence 99999999999999999999999999999999999988778899999999999999999999999999999999999999
Q ss_pred CCchhhhhcC
Q 028838 194 GRREADIKNK 203 (203)
Q Consensus 194 g~Re~d~r~~ 203 (203)
|+||+|+||+
T Consensus 162 G~Rerd~rn~ 171 (381)
T PRK11197 162 GARYRDAHSG 171 (381)
T ss_pred CCChhhhhcC
Confidence 9999999986
No 5
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00 E-value=9.2e-57 Score=405.23 Aligned_cols=164 Identities=45% Similarity=0.690 Sum_probs=160.9
Q ss_pred HHHHHHHHHhCChhhhhhhcCCccchhhHHHHHHHhhccccccccccCCCCCCcceeecCcccCcceEeccccchhccCc
Q 028838 39 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANP 118 (203)
Q Consensus 39 ~d~~~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~af~~i~L~pRvL~dv~~~dtst~l~G~~~s~Pi~iaP~g~~~l~hp 118 (203)
+|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+||+++||+|++||+++++||+|||+|+++|+||
T Consensus 1 ~D~~~~Ar~~lp~~~~~Y~~~ga~de~t~~~N~~af~~~~l~PRvLr~v~~~d~~ttllG~~~~~P~~iaP~g~~~l~hp 80 (361)
T cd04736 1 EDYRSLAKKRLPRMVFDYLEGGAEDEKGLRHNRDAFDRWRFIPRRLVDVSKRDISASLFGKVWSAPLVIAPTGLNGAFWP 80 (361)
T ss_pred ChHHHHHHHhCCHHHHHHHccCcchHHHHHHHHHHHHHcCccccccCCCCCCCCceeECCccccccccccHHHHHhccCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCeEEecCCCCCCHHHHHhhcCCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCchh
Q 028838 119 EGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREA 198 (203)
Q Consensus 119 ~gE~a~AraA~~~gi~~~lss~ss~sleeia~~~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p~~g~Re~ 198 (203)
+||+++||||+++|++|++||+|++|+|||+++.+++.|||||++ |+++++++|+||+++||+|||||||+|+.|+||+
T Consensus 81 ~gE~a~AraA~~~g~~~~lSt~ss~siEeva~a~~~~~wfQLY~~-~r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~ 159 (361)
T cd04736 81 NGDLALARAAAKAGIPFVLSTASNMSIEDVARQADGDLWFQLYVV-HRELAELLVKRALAAGYTTLVLTTDVAVNGYRER 159 (361)
T ss_pred cHHHHHHHHHHHcCCcEEeeCCCCCCHHHHHhhcCCCeEEEEEec-CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCchh
Confidence 999999999999999999999999999999998888899999997 5999999999999999999999999999999999
Q ss_pred hhhcC
Q 028838 199 DIKNK 203 (203)
Q Consensus 199 d~r~~ 203 (203)
|+|||
T Consensus 160 d~r~~ 164 (361)
T cd04736 160 DLRNG 164 (361)
T ss_pred hhhcC
Confidence 99986
No 6
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=100.00 E-value=1.5e-56 Score=406.60 Aligned_cols=169 Identities=41% Similarity=0.625 Sum_probs=166.0
Q ss_pred CCCHHHHHHHHHHhCChhhhhhhcCCccchhhHHHHHHHhhccccccccccCCCCCCcceeecCcccCcceEeccccchh
Q 028838 35 PVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHK 114 (203)
Q Consensus 35 ~~~~~d~~~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~af~~i~L~pRvL~dv~~~dtst~l~G~~~s~Pi~iaP~g~~~ 114 (203)
++|++|||+.||++||+.+|+|+.||++||.|+++|+++|++|+|+||+|+||+++||+|+|||+++++||+|||+|+++
T Consensus 18 ~~~i~D~~~~Ar~~lp~~~~~y~~gGa~de~t~~~N~~af~~~~l~PRvL~dv~~~dt~t~llG~~~~~P~~iAP~g~~~ 97 (383)
T cd03332 18 PVDPERLEALAREALSPGAFAYVAGGAGSESTARANRDAFSRWRIVPRMLRGVTERDLSVELFGRTLAAPLLLAPIGVQE 97 (383)
T ss_pred cCCHHHHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhcCccccccccCCCCCCceeeCCccccccceechHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHhhc-CCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 028838 115 LANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASC-NAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRL 193 (203)
Q Consensus 115 l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~~~-~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p~~ 193 (203)
++||+||+++||||+++|++|++||++++|+|||+++. +++.|||||+++|+++++++|+||+++||+|||||||+|+.
T Consensus 98 l~~p~gE~a~ArAA~~~gi~~~lSt~ss~slEeIa~~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~ 177 (383)
T cd03332 98 LFHPDAELATARAAAELGVPYILSTASSSSIEDVAAAAGDAPRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSL 177 (383)
T ss_pred hcCCcHHHHHHHHHHHcCCCeeecCCCCCCHHHHHhhcCCCCcEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 99999999999999999999999999999999999885 47899999999999999999999999999999999999999
Q ss_pred CCchhhhhcC
Q 028838 194 GRREADIKNK 203 (203)
Q Consensus 194 g~Re~d~r~~ 203 (203)
|+||+|+||+
T Consensus 178 g~Rerd~r~~ 187 (383)
T cd03332 178 GWRPRDLDLG 187 (383)
T ss_pred CCchhhhhcC
Confidence 9999999986
No 7
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=100.00 E-value=1.7e-56 Score=404.18 Aligned_cols=170 Identities=35% Similarity=0.567 Sum_probs=166.5
Q ss_pred CCCCHHHHHHHHHHhCChhhhhhhcCCccchhhHHHHHHHhhccccccccccCCCCCCcceeecCcccCcceEeccccch
Q 028838 34 EPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALH 113 (203)
Q Consensus 34 ~~~~~~d~~~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~af~~i~L~pRvL~dv~~~dtst~l~G~~~s~Pi~iaP~g~~ 113 (203)
+++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|+|||+++++||+|||+|++
T Consensus 12 ~~~~i~D~~~~A~~~lp~~~~~y~~~ga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pv~iaP~g~~ 91 (367)
T TIGR02708 12 DFINTYDLEEMAQQVIPKGAFGYIASGAGDTFTLRENIRAFNHKLIVPHLLQDVENPSTEIEFLGHKLKSPFIMAPVAAH 91 (367)
T ss_pred CCCCHHHHHHHHHHhCCHHHHHHHhcCCchHHHHHHHHHHHHhcCeecccccCCCCCCCceeeCCcccccccccCcHHHh
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHhhc-CCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCCC
Q 028838 114 KLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASC-NAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPR 192 (203)
Q Consensus 114 ~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~~~-~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p~ 192 (203)
+++||+||.++||||+++|++|++||+|++|+|||+++. +++.|||||+++|+++++++|+||+++||+||+||||+|+
T Consensus 92 ~l~~p~gE~~~ArAA~~~g~~~~lSt~ss~slEev~~~~~~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p~ 171 (367)
T TIGR02708 92 KLANEQGEVATARGVSEFGSIYTTSSYSTADLPEISEALNGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATV 171 (367)
T ss_pred hccCCcHHHHHHHHHHHcCCCeeecccccCCHHHHHhhcCCCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 999999999999999999999999999999999999885 5789999999999999999999999999999999999999
Q ss_pred CCCchhhhhcC
Q 028838 193 LGRREADIKNK 203 (203)
Q Consensus 193 ~g~Re~d~r~~ 203 (203)
.|+||+|+||+
T Consensus 172 ~g~R~~d~r~~ 182 (367)
T TIGR02708 172 GGNREVDVRNG 182 (367)
T ss_pred CCcchhhhhcC
Confidence 99999999985
No 8
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00 E-value=4.7e-55 Score=393.37 Aligned_cols=170 Identities=42% Similarity=0.643 Sum_probs=166.5
Q ss_pred CCCCHHHHHHHHHHhCChhhhhhhcCCccchhhHHHHHHHhhccccccccccCCCCCCcceeecCcccCcceEeccccch
Q 028838 34 EPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALH 113 (203)
Q Consensus 34 ~~~~~~d~~~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~af~~i~L~pRvL~dv~~~dtst~l~G~~~s~Pi~iaP~g~~ 113 (203)
+++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|++||+++++||+|||||++
T Consensus 4 ~~~~i~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~a~~~~~l~prvL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~ 83 (351)
T cd04737 4 DIINLYDLEAEAKKVIPKGAFGYIAGGSEDEWTLRENTRAFNHKQIVPRVLQGVESPDTSTELLGIKLKTPIIMAPIAAH 83 (351)
T ss_pred ccCcHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcCeechhccCCCCCCCceEeCCccccchhhhHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHhhc-CCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCCC
Q 028838 114 KLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASC-NAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPR 192 (203)
Q Consensus 114 ~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~~~-~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p~ 192 (203)
+++||+||+++||||+++|++|++|+.+++|+|||+++. +++.|||+|+++|+++++++|+||+++||++|+||||+|+
T Consensus 84 ~l~~p~ge~a~AraA~~~gi~~~lSt~s~~s~Eei~~~~~~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~ 163 (351)
T cd04737 84 GLAHATGEVATARGMAEVGSLFSISTYSNTSLEEIAKASNGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATV 163 (351)
T ss_pred HhcCCchHHHHHHHHHHcCCCEEecCCCCCCHHHHHHhcCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 999999999999999999999999999999999999987 5799999999999999999999999999999999999999
Q ss_pred CCCchhhhhcC
Q 028838 193 LGRREADIKNK 203 (203)
Q Consensus 193 ~g~Re~d~r~~ 203 (203)
.|+|++|+||+
T Consensus 164 ~g~R~~d~r~~ 174 (351)
T cd04737 164 GGNREADIRNK 174 (351)
T ss_pred CCcchHHHHhc
Confidence 99999999985
No 9
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=100.00 E-value=2.2e-52 Score=375.35 Aligned_cols=165 Identities=47% Similarity=0.723 Sum_probs=161.2
Q ss_pred HHHHHHHHHhCChhhhhhhcCCccchhhHHHHHHHhhccccccccccCCCCCCcceeecCcccCcceEeccccchhccCc
Q 028838 39 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANP 118 (203)
Q Consensus 39 ~d~~~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~af~~i~L~pRvL~dv~~~dtst~l~G~~~s~Pi~iaP~g~~~l~hp 118 (203)
+|||+.||++||+.+|+|++||++||.|+++|++||++|+|+||+|+|++++||+|+|||+++++||+|||||+++++||
T Consensus 1 ~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~af~~~~l~pr~L~dv~~~d~~~~~lG~~~~~Pi~iaP~~~~~~~~~ 80 (344)
T cd02922 1 HDFEAAAKKYLSKKAWAYYSSGADDEITLRENLEAFQRIRFRPRVLRDVEKVDTSTTILGHKVSLPFFISPAALAKLAHP 80 (344)
T ss_pred ChHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhCceeccccCCCCCCCCceEECCcccCCceeeChHHHhhhCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCeEEecCCCCCCHHHHHhhc-C-CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCc
Q 028838 119 EGEVATARAAASCNTIMVLSFTSSSSIEEVAASC-N-AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRR 196 (203)
Q Consensus 119 ~gE~a~AraA~~~gi~~~lss~ss~sleeia~~~-~-~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p~~g~R 196 (203)
+||+++||||+++|++|++||++++|+|||+++. | ++.|||||+++|++.++++++||+++||+||+||||+|+.|+|
T Consensus 81 ~ge~~~AraA~~~gi~~~lss~s~~s~e~v~~~~~~~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r 160 (344)
T cd02922 81 DGELNLARAAGKHGILQMISTNASCSLEEIVDARPPDQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKR 160 (344)
T ss_pred hHHHHHHHHHHHcCCCEEecCcccCCHHHHHHhcCCCCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcc
Confidence 9999999999999999999999999999998874 4 7899999999999999999999999999999999999999999
Q ss_pred hhhhhcC
Q 028838 197 EADIKNK 203 (203)
Q Consensus 197 e~d~r~~ 203 (203)
++|+||+
T Consensus 161 ~~d~r~~ 167 (344)
T cd02922 161 ERDERLK 167 (344)
T ss_pred hhhhhhc
Confidence 9999985
No 10
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=100.00 E-value=5.1e-49 Score=355.01 Aligned_cols=159 Identities=48% Similarity=0.694 Sum_probs=152.1
Q ss_pred HHHhCChhhhhhhcCCccchhhHHHHHHHhhccccccccccCCCCCCcceeecCcccCcceEeccccchhccCchHHHHH
Q 028838 45 ARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVAT 124 (203)
Q Consensus 45 Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~af~~i~L~pRvL~dv~~~dtst~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~ 124 (203)
||++||+.+|+||+||+++|.|+++|+++|++|+|+||+|+|++++||+|+|||+++++||+|||||+++++||+||.++
T Consensus 1 Ar~~lp~~~~~yi~gga~~e~t~~~N~~af~~i~l~prvL~dv~~~D~st~~lG~~~s~P~~iaP~~~~~l~~~~ge~~l 80 (356)
T PF01070_consen 1 ARRRLPPRVFDYIDGGAGDEVTFRRNREAFDRIRLRPRVLRDVSDPDTSTTFLGQKLSMPFFIAPMGGGGLAHPDGERAL 80 (356)
T ss_dssp HHHHS-HHHHHHHHHHSTTTHHHHHHHHGGGGEEE---SSSBGSS-BSSEEETTEEESSSEEEEEESTGGGTSTTHHHHH
T ss_pred CccccCHHHHHHHHHcCCCcHHHHHHHHHHHHhcccccccCCcccCCCCeeeCCccCCCCeEEcchhhhhhhccchHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCCHHHHHhhcCCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhcC
Q 028838 125 ARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNK 203 (203)
Q Consensus 125 AraA~~~gi~~~lss~ss~sleeia~~~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p~~g~Re~d~r~~ 203 (203)
||+|+++|++|++||+++.++|||+++.+++.|||||+++|++.+.++|+|||++||+||+||||+|+.|+|++|.|++
T Consensus 81 AraA~~~Gi~~~lss~s~~~~e~ia~~~~~~~~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g 159 (356)
T PF01070_consen 81 ARAAAKAGIPMMLSSQSSASLEEIAAASGGPLWFQLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNG 159 (356)
T ss_dssp HHHHHHHTSEEEEETTCSSCHHHHHHHCTSEEEEEEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHT
T ss_pred HHHHhccCcceeccCCccCCHHHHHhhccCCeEEEEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCcccccccc
Confidence 9999999999999999999999999998899999999999999999999999999999999999999999999999986
No 11
>PLN02979 glycolate oxidase
Probab=100.00 E-value=2e-42 Score=311.43 Aligned_cols=128 Identities=61% Similarity=0.973 Sum_probs=125.3
Q ss_pred ccccccccccCCCCCCcceeecCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHhhcCCc
Q 028838 76 RITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAV 155 (203)
Q Consensus 76 ~i~L~pRvL~dv~~~dtst~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~~~~~~ 155 (203)
-|+|+||+|+||+++||+|++||+++++||+|||+|+++++||+||.++||||+++|++|++|++|++|+|||+++.+++
T Consensus 43 ~~~lrPRvLrdv~~~dtst~llG~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi~~~lSt~ss~slEeIa~a~~~~ 122 (366)
T PLN02979 43 FCDFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGI 122 (366)
T ss_pred eeEEECccccCCCCCCCceEECCcccCccceecHHHHHhhCCCChHHHHHHHHHHcCCCeeeccCcCCCHHHHHhccCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999887789
Q ss_pred eeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhhcC
Q 028838 156 RFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNK 203 (203)
Q Consensus 156 ~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p~~g~Re~d~r~~ 203 (203)
.|||||+++|+++++++|+||+++||+||+||||+|+.|+||+|+|||
T Consensus 123 ~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~ 170 (366)
T PLN02979 123 RFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNR 170 (366)
T ss_pred eEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccC
Confidence 999999999999999999999999999999999999999999999986
No 12
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.2e-36 Score=274.71 Aligned_cols=161 Identities=49% Similarity=0.686 Sum_probs=156.0
Q ss_pred HHHHHHHHHHhCChhhhhhhcCCccchhhHHHHHHHhhccccccccccCCCCCCcceeecCcccCcceEeccccchhccC
Q 028838 38 LNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLAN 117 (203)
Q Consensus 38 ~~d~~~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~af~~i~L~pRvL~dv~~~dtst~l~G~~~s~Pi~iaP~g~~~l~h 117 (203)
+.|++..|++++| +.|.|+.+|+++|.|+++|+++|++|.|+||+|++++++|++|+|||+++++||+|+||++++|.|
T Consensus 1 ~~~~~~~a~~~~~-~~~hy~~~~~~~e~t~~~n~~~f~~i~l~~~~L~~v~~idlst~~~G~~l~~Pi~iapmt~g~~~~ 79 (360)
T COG1304 1 VADLRRAAQRRLP-KAFHYIDGGAEDEVTLRRNREAFEDIALRPRVLPEVDDIDLSTTFLGQKLSAPIIIAPMTGGGLAH 79 (360)
T ss_pred CcchHHHHhhhcc-hHhHHHHhhccccccHhhhhhhhhhheeecccCCCcccCccceEecCccccCCEEEeccccccccC
Confidence 3589999999999 889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhcCCeEEecCCCCCCHHHHHhhcCCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCch
Q 028838 118 PEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRRE 197 (203)
Q Consensus 118 p~gE~a~AraA~~~gi~~~lss~ss~sleeia~~~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p~~g~Re 197 (203)
++||...+++|+++|+++++|+++|+++|++.+..+ ||+|+.+||+...++++||+++||+++++|||+|+.|+|+
T Consensus 80 ~~ge~~~a~~A~~a~~~~i~s~~gs~~ie~~~~~~~----~q~y~~~~R~~~~~~~~~a~n~G~~~lv~t~d~~~~~~r~ 155 (360)
T COG1304 80 PEGEVINAKLAAAAGEPFILSTVGSQRIEEVAAAPP----FQLYFSKDREFAPNLVDRAANAGAKQLVLTVDSPVGGERE 155 (360)
T ss_pred hhhHHHHHHHHHHcCCCeeeeccccCcHHHhhcCcc----hhhhhHHHHHhhHHHHHHHHhcCCcceeeccCccchHHHH
Confidence 999999999999999999999999999999988766 8999999999999999999999999999999999999999
Q ss_pred hhhhcC
Q 028838 198 ADIKNK 203 (203)
Q Consensus 198 ~d~r~~ 203 (203)
+|.+++
T Consensus 156 ~d~~~~ 161 (360)
T COG1304 156 RDAVNG 161 (360)
T ss_pred HHHHhc
Confidence 998874
No 13
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=100.00 E-value=3.9e-34 Score=252.09 Aligned_cols=158 Identities=53% Similarity=0.794 Sum_probs=152.8
Q ss_pred HHHHHHHHHhCChhhhhhhcCCccchhhHHHHHHHhhccccccccccCCCCCCcceeecCcccCcceEeccccchhccCc
Q 028838 39 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANP 118 (203)
Q Consensus 39 ~d~~~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~af~~i~L~pRvL~dv~~~dtst~l~G~~~s~Pi~iaP~g~~~l~hp 118 (203)
.||+..|+++||+..|.|+.||++++.|+++|+.+|++|+|+||+|++++++||+|+|||++++.||+|+||++.++.||
T Consensus 1 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~l~~~~~id~~~~~lg~~~~~Pi~iapm~g~~~~~~ 80 (299)
T cd02809 1 ADLRALARRRLPKAVFDYIDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSKRDTSTTLLGQKLAMPFGIAPTGLQGLAHP 80 (299)
T ss_pred ChHHHHHHHhCCHHHhhhhccccchHHHHHHHHHHHHhceeecccCCCCCCCCCceEECCeecCCCeeeCcccccccCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999998888899
Q ss_pred hHHHHHHHHHHhcCCeEEecCCCCCCHHHHHhhcCCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCc
Q 028838 119 EGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRR 196 (203)
Q Consensus 119 ~gE~a~AraA~~~gi~~~lss~ss~sleeia~~~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p~~g~R 196 (203)
+++..+|++|+++|+++++|++++.++|++.+..+++.|+|||...|.+.+.++++++++.|+++|.+++|+|..|.|
T Consensus 81 ~~~~~la~aa~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~ 158 (299)
T cd02809 81 DGELATARAAAAAGIPFTLSTVSTTSLEEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRR 158 (299)
T ss_pred hHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHhcCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC
Confidence 999999999999999999999999999999988888999999998899999999999999999999999999998766
No 14
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=99.37 E-value=1.2e-12 Score=117.26 Aligned_cols=119 Identities=21% Similarity=0.153 Sum_probs=84.8
Q ss_pred HHHHHhhcccccccccc--CCCCCCcceeecCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCC----
Q 028838 69 ENVEAFHRITFRPRILV--DVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSS---- 142 (203)
Q Consensus 69 ~N~~af~~i~L~pRvL~--dv~~~dtst~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss---- 142 (203)
.+...|++|+|+|+.|+ +++++||+|+|||++++.||+++||++....-.+....+|++|.++|++|++||++.
T Consensus 17 ~~~~~~d~i~l~~~~l~~~~~~~id~s~~~~G~~l~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~ 96 (326)
T cd02811 17 GGSTGFDDVRLVHNALPELDLDDIDLSTEFLGKRLSAPLLISAMTGGSEKAKEINRNLAEAAEELGIAMGVGSQRAALED 96 (326)
T ss_pred cCCCChhhEEEecccCCCCCcccCCCeeEECCceecCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCeEecCchhhccC
Confidence 35667999999999999 889999999999999999999999865321122346899999999999999999853
Q ss_pred ----CCHHHHHhhcC-CceeEEEee----eCCHHHHHHHHHHHHHcCCcEEEEeecC
Q 028838 143 ----SSIEEVAASCN-AVRFYQLYV----FKKRDIAATLVQRAERNGFKALVLTADT 190 (203)
Q Consensus 143 ----~sleeia~~~~-~~~w~Qly~----~~d~~~~~~ll~rAe~aG~~AlvvTVD~ 190 (203)
.+++.+.+..+ .+.+-=+-. ..+.+...+.++ ..+++|+-++++.
T Consensus 97 ~e~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~---~~~adalel~l~~ 150 (326)
T cd02811 97 PELAESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVE---MIEADALAIHLNP 150 (326)
T ss_pred hhhhhHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHH---hcCCCcEEEeCcc
Confidence 23344555444 332111111 124444444443 4678999999875
No 15
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=99.31 E-value=3.5e-12 Score=115.42 Aligned_cols=116 Identities=23% Similarity=0.201 Sum_probs=82.9
Q ss_pred HHHhhcccccccccc--CCCCCCcceeecCcccCcceEeccccch-hccCchHHHHHHHHHHhcCCeEEecCCCC-----
Q 028838 71 VEAFHRITFRPRILV--DVSRIDLSTTILDYKISAPIIIAPTALH-KLANPEGEVATARAAASCNTIMVLSFTSS----- 142 (203)
Q Consensus 71 ~~af~~i~L~pRvL~--dv~~~dtst~l~G~~~s~Pi~iaP~g~~-~l~hp~gE~a~AraA~~~gi~~~lss~ss----- 142 (203)
...|++|+|.|+.|+ +++++||+|+|||+++++||+|+||++. .+ -.+.+.++|++|.++|++|++||++.
T Consensus 27 ~~~~d~v~l~~~~lp~~~~~~vd~s~~~~g~~l~~Pi~i~~MtGgs~~-~~~in~~La~~a~~~G~~~~~Gs~~~~~~~~ 105 (352)
T PRK05437 27 TTGFDDVRLIHNALPELDLDDIDLSTEFLGKKLSAPFLINAMTGGSEK-AKEINRKLAEAAEELGIAMGVGSQRAALKDP 105 (352)
T ss_pred CCChheEEEecccCCCCChhhccceeeECCceecCCEEecccCCCChh-HHHHHHHHHHHHHHcCCCeEecccHhhccCh
Confidence 345999999999999 7899999999999999999999998543 22 23566999999999999999999863
Q ss_pred ---CCHHHHHhhcC-CceeEEEeee----CCHHHHHHHHHHHHHcCCcEEEEeecC
Q 028838 143 ---SSIEEVAASCN-AVRFYQLYVF----KKRDIAATLVQRAERNGFKALVLTADT 190 (203)
Q Consensus 143 ---~sleeia~~~~-~~~w~Qly~~----~d~~~~~~ll~rAe~aG~~AlvvTVD~ 190 (203)
.+++.+.+..| .+.+-=|... .+.+.. .+.++..++.|+-+.+..
T Consensus 106 ~~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~---~~~~~~~~adal~l~l~~ 158 (352)
T PRK05437 106 ELADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEA---QRAVEMIEADALQIHLNP 158 (352)
T ss_pred hhHHHHHHHHHHCCCceEEeecCccccCCCCHHHH---HHHHHhcCCCcEEEeCcc
Confidence 23334455444 3332222222 223333 333445688899998855
No 16
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=99.20 E-value=4.5e-11 Score=107.32 Aligned_cols=119 Identities=18% Similarity=0.129 Sum_probs=79.8
Q ss_pred Hhhcccccccccc--CCCCCCcceeecCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCC--------
Q 028838 73 AFHRITFRPRILV--DVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSS-------- 142 (203)
Q Consensus 73 af~~i~L~pRvL~--dv~~~dtst~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss-------- 142 (203)
.|++|+|.|..|+ +++++||||+|||+++++||+++||++..---......+|++|+++|+++++||++.
T Consensus 22 ~~~~~~~~~~~lp~~~~~~~d~s~~~~g~~l~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~~~~ 101 (333)
T TIGR02151 22 GFDDITLIHNALPEINLDDIDLTTEFLGKRLKAPFYINAMTGGSEEAGKINRNLARAARELGIPMGVGSQRAALKDPETA 101 (333)
T ss_pred CcceEEEecCCCCCCCcccCCCceEECCccccCCEEEeCCCCCchhHHHHHHHHHHHHHHcCCCeEEcCchhhccChhhH
Confidence 3999999999999 568899999999999999999999854321112336899999999999999999762
Q ss_pred CCHHHHHhhcC-CceeEEEeeeCCHH-HHHHHHHHHHHcCCcEEEEeecCC
Q 028838 143 SSIEEVAASCN-AVRFYQLYVFKKRD-IAATLVQRAERNGFKALVLTADTP 191 (203)
Q Consensus 143 ~sleeia~~~~-~~~w~Qly~~~d~~-~~~~ll~rAe~aG~~AlvvTVD~p 191 (203)
.+.+.+.+..+ .+..--+-...... ...+..+..+..++.|+-+++..+
T Consensus 102 ~~~~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~ 152 (333)
T TIGR02151 102 DTFEVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVL 152 (333)
T ss_pred hHHHHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCccc
Confidence 12234444344 33222221111111 123333444456788888888743
No 17
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=98.41 E-value=5.5e-07 Score=81.07 Aligned_cols=106 Identities=15% Similarity=0.099 Sum_probs=73.0
Q ss_pred HhhccccccccccCC--CCCCcceeecCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHh
Q 028838 73 AFHRITFRPRILVDV--SRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAA 150 (203)
Q Consensus 73 af~~i~L~pRvL~dv--~~~dtst~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~ 150 (203)
.|++++|+|..|+.. +++|++|+|+|.++++||||++|- . ..+..+|+.|++.|...++-- .++|+...
T Consensus 6 ~Fddv~lv~~~lp~~s~~dvdlst~~~~~~l~~P~~inAM~-----t-~iN~~LA~~a~~~G~~~~~~k---~~~e~~~~ 76 (326)
T PRK05458 6 DYEDIQLIPNKCIVNSRSECDTSVTLGPRTFKLPVVPANMQ-----T-IIDEKIAEWLAENGYFYIMHR---FDPEARIP 76 (326)
T ss_pred CccceEEecCCCCCCCHHHcccceEECCcEecCcEEEeccc-----c-hhHHHHHHHHHHcCCEEEEec---CCHHHHHH
Confidence 399999999999954 689999999999999999999982 2 789999999999998888854 25666443
Q ss_pred h---c-CCceeEEEeeeCCHHHHHHHHHHHHHcCC--cEEEEee
Q 028838 151 S---C-NAVRFYQLYVFKKRDIAATLVQRAERNGF--KALVLTA 188 (203)
Q Consensus 151 ~---~-~~~~w~Qly~~~d~~~~~~ll~rAe~aG~--~AlvvTV 188 (203)
. . +...+.-+-+....+ ..+.++...++|+ ++|+|++
T Consensus 77 ~~r~~~~~~l~v~~~vg~~~~-~~~~~~~Lv~ag~~~d~i~iD~ 119 (326)
T PRK05458 77 FIKDMHEQGLIASISVGVKDD-EYDFVDQLAAEGLTPEYITIDI 119 (326)
T ss_pred HHHhccccccEEEEEecCCHH-HHHHHHHHHhcCCCCCEEEEEC
Confidence 2 2 321111222222222 2344555556765 7666644
No 18
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=98.36 E-value=1.6e-06 Score=77.95 Aligned_cols=106 Identities=15% Similarity=0.123 Sum_probs=74.3
Q ss_pred HhhccccccccccCC--CCCCcceeecCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHh
Q 028838 73 AFHRITFRPRILVDV--SRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAA 150 (203)
Q Consensus 73 af~~i~L~pRvL~dv--~~~dtst~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~ 150 (203)
.|++++|+|+.|+.. +++|++|+|+|.++++||+|++|- . ..+..+|++|++.|...++--+ ++|+..+
T Consensus 3 ~FddV~lvp~~lp~~s~~dVdlst~~~~~~l~~P~~inAM~-----t-~in~~LA~~a~~~G~~~i~hK~---~~E~~~s 73 (321)
T TIGR01306 3 DYEDIQLIPNKCIVNSRSECDTSVTLGKHKFKLPVVPANMQ-----T-IIDEKLAEQLAENGYFYIMHRF---DEESRIP 73 (321)
T ss_pred CcccEEEecCCCCCCCHHHceeeEEECCcEecCcEEeeccc-----h-hhhHHHHHHHHHcCCEEEEecC---CHHHHHH
Confidence 499999999999965 689999999999999999999982 2 7899999999999999998553 5665433
Q ss_pred hc----CCceeEEEeee---CCHHHHHHHHHHHHHcCCcEEEEeecCC
Q 028838 151 SC----NAVRFYQLYVF---KKRDIAATLVQRAERNGFKALVLTADTP 191 (203)
Q Consensus 151 ~~----~~~~w~Qly~~---~d~~~~~~ll~rAe~aG~~AlvvTVD~p 191 (203)
.. +. |++.. .-.+.-.+.++.-.++|..+=+|.+|+.
T Consensus 74 fvrk~k~~----~L~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~a 117 (321)
T TIGR01306 74 FIKDMQER----GLFASISVGVKACEYEFVTQLAEEALTPEYITIDIA 117 (321)
T ss_pred HHHhcccc----ccEEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCc
Confidence 22 22 22222 1122223455555667854444555553
No 19
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=97.33 E-value=0.0009 Score=60.17 Aligned_cols=106 Identities=23% Similarity=0.230 Sum_probs=70.2
Q ss_pred Hhhcccccccccc-CCCCCCcceeecC-cccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHh
Q 028838 73 AFHRITFRPRILV-DVSRIDLSTTILD-YKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAA 150 (203)
Q Consensus 73 af~~i~L~pRvL~-dv~~~dtst~l~G-~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~ 150 (203)
.|+++.|+|.... +.+++|++|.|.+ ..+..||+.|||... .+..+|.+.+++|-.-++.. +.++|+..+
T Consensus 3 ~~ddv~l~p~~~~~~~~~vdl~t~l~~~~~l~~Piv~apM~~v------t~~~ma~ava~~GglGvi~~--~~~~~~~~~ 74 (325)
T cd00381 3 TFDDVLLVPGYSTVLPSEVDLSTKLTKNITLNIPLVSAPMDTV------TESEMAIAMARLGGIGVIHR--NMSIEEQAE 74 (325)
T ss_pred CcccEEEeCCCCCCCHHHceeeEEecCccccCCCEEecCCCcC------CcHHHHHHHHHCCCEEEEeC--CCCHHHHHH
Confidence 4899999998633 4577999999998 889999999998653 24466777777777555543 234565543
Q ss_pred hc---C-CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEee
Q 028838 151 SC---N-AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTA 188 (203)
Q Consensus 151 ~~---~-~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTV 188 (203)
.. . .....+.... +....+.++...++|++.|+|+.
T Consensus 75 ~i~~vk~~l~v~~~~~~--~~~~~~~~~~l~eagv~~I~vd~ 114 (325)
T cd00381 75 EVRKVKGRLLVGAAVGT--REDDKERAEALVEAGVDVIVIDS 114 (325)
T ss_pred HHHHhccCceEEEecCC--ChhHHHHHHHHHhcCCCEEEEEC
Confidence 32 2 2222333222 23345677777889999888765
No 20
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.33 E-value=0.00076 Score=61.83 Aligned_cols=116 Identities=16% Similarity=0.151 Sum_probs=76.2
Q ss_pred HhhccccccccccCC--CCCCcceeecCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCC----CCCCHH
Q 028838 73 AFHRITFRPRILVDV--SRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFT----SSSSIE 146 (203)
Q Consensus 73 af~~i~L~pRvL~dv--~~~dtst~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~----ss~sle 146 (203)
.|++|.|+|. ++.+ +++|+++.+.+..+..||+++||.+. .+..++.+..++|-.-++.+. ...+.|
T Consensus 17 ~fddV~lvp~-~~~~~~~dvdls~~~~~~~i~~Piv~a~M~gV------t~~~la~avs~~GglGvl~~~gl~~~~~~~e 89 (368)
T PRK08649 17 GLDEIAIVPS-RRTRDPEDVSTSWQIDAYRFEIPIIASPMDAV------VSPETAIELGKLGGLGVLNLEGLWTRYEDPE 89 (368)
T ss_pred CcceEEEeCC-CCCCCHHHceeeeeecceeccCcEeccCCccc------CCHHHHHHHHhCCCceEEeeccccccCCCHH
Confidence 4999999999 7754 67899998999999999999998543 345788888888886555521 122345
Q ss_pred HHHhhc----C------------Cce---------------eEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe---ecCCC
Q 028838 147 EVAASC----N------------AVR---------------FYQLYVFKKRDIAATLVQRAERNGFKALVLT---ADTPR 192 (203)
Q Consensus 147 eia~~~----~------------~~~---------------w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvT---VD~p~ 192 (203)
++.+.. + .|+ -.-+-+.-+.....++++.++++|+++|+++ +|...
T Consensus 90 ~l~~qi~~~~~~~~~~~~~~~~~~P~~p~l~~~iv~~~~~~~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h 169 (368)
T PRK08649 90 PILDEIASLGKDEATRLMQELYAEPIKPELITERIAEIRDAGVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEH 169 (368)
T ss_pred HHHHHHHhcCcHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCeEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhc
Confidence 443321 0 000 0111111123345688888899999999995 47665
Q ss_pred CCC
Q 028838 193 LGR 195 (203)
Q Consensus 193 ~g~ 195 (203)
.+.
T Consensus 170 ~~~ 172 (368)
T PRK08649 170 VSK 172 (368)
T ss_pred cCC
Confidence 544
No 21
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=94.77 E-value=0.1 Score=47.98 Aligned_cols=61 Identities=18% Similarity=0.201 Sum_probs=46.2
Q ss_pred Hhhcccccccc-ccCCCCCCcceeecCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecC
Q 028838 73 AFHRITFRPRI-LVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSF 139 (203)
Q Consensus 73 af~~i~L~pRv-L~dv~~~dtst~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss 139 (203)
.||+|.|+|.. =+|-+++||+..+=+.++..||+.|||++. -+..++..+.++|-.-++|.
T Consensus 14 ~~d~i~~vp~~~t~~~~~v~~~~~i~~~~l~~PivlAPMagV------td~~fr~~~~~~Galgvvsa 75 (369)
T TIGR01304 14 SLDDISVVPSRRTRSSKDVDTAWQIDAYRFELPFIAHPMDAL------VSPEFAIELGELGGLGVLNL 75 (369)
T ss_pred CcceEEEcCCCCCCChhhccceeEEcceecCCceeecCCCcc------cCHHHHHHHHHcCCcccccc
Confidence 58999999974 346677888888877889999999998653 23467777888877555653
No 22
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.49 E-value=0.31 Score=45.46 Aligned_cols=70 Identities=21% Similarity=0.238 Sum_probs=50.0
Q ss_pred Hhhcccccccccc-CCCCCCcceeec-CcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHh
Q 028838 73 AFHRITFRPRILV-DVSRIDLSTTIL-DYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAA 150 (203)
Q Consensus 73 af~~i~L~pRvL~-dv~~~dtst~l~-G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~ 150 (203)
.|+++.|+|..-. ..+++|++|.|. ...+..||+-|||... .+..+|.+.+++|-.-+++. ..++|++.+
T Consensus 11 tfdDvll~P~~s~~~~~~vdl~t~lt~~l~l~iPIvsApMd~V------t~~~lA~AvA~aGGlGvI~~--~~~~e~l~~ 82 (404)
T PRK06843 11 TFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTV------TESQMAIAIAKEGGIGIIHK--NMSIEAQRK 82 (404)
T ss_pred CccceEEccCCCccCHHhccccchhhhccCCCCCEecCCCCCC------CCHHHHHHHHHCCCEEEecC--CCCHHHHHH
Confidence 4899999998543 235678888775 4567899999998643 24577788888887777763 466776543
No 23
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=93.77 E-value=0.35 Score=44.28 Aligned_cols=107 Identities=22% Similarity=0.206 Sum_probs=58.8
Q ss_pred Hhhccccccccc---cCCCCCCcceee-cCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHH
Q 028838 73 AFHRITFRPRIL---VDVSRIDLSTTI-LDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEV 148 (203)
Q Consensus 73 af~~i~L~pRvL---~dv~~~dtst~l-~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleei 148 (203)
.|+++.|+|..- +.-.++|+++.+ =+.++..||+-|||-.. .|..+|.+-++.|-.-++-- +.++|+-
T Consensus 4 tfdDVllvP~~s~v~~s~~dv~~~~~~~~~~~l~iPivsa~MDtV------te~~mAiama~~Gglgvih~--~~~~e~q 75 (352)
T PF00478_consen 4 TFDDVLLVPGRSTVLPSRSDVSLSTKLTRNITLKIPIVSAPMDTV------TESEMAIAMARLGGLGVIHR--NMSIEEQ 75 (352)
T ss_dssp -GGGEEEE--SBSSTGGGGG-BEEEESSTSEEESSSEEE-SSTTT------SSHHHHHHHHHTTSEEEEES--SSCHHHH
T ss_pred ccccEEEecCCCCCCCCHhheECcccccCCEeecCceEecCcccc------chHHHHHHHHHhcCCceecC--CCCHHHH
Confidence 499999999974 344555555445 58899999999996322 35577888888888888754 3455432
Q ss_pred -------HhhcC-------CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEee
Q 028838 149 -------AASCN-------AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTA 188 (203)
Q Consensus 149 -------a~~~~-------~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTV 188 (203)
++..| +....-..+.- .+...+.++...++|++.|+|++
T Consensus 76 ~~~v~~vK~~~~~a~~d~~~~l~V~aavg~-~~~~~er~~~L~~agvD~ivID~ 128 (352)
T PF00478_consen 76 AEEVKKVKRYYPNASKDEKGRLLVAAAVGT-RDDDFERAEALVEAGVDVIVIDS 128 (352)
T ss_dssp HHHHHHHHTHHTTHHBHTTSCBCEEEEEES-STCHHHHHHHHHHTT-SEEEEE-
T ss_pred HHHHhhhccccccccccccccceEEEEecC-CHHHHHHHHHHHHcCCCEEEccc
Confidence 22111 11111112211 11123455555668999887764
No 24
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=93.22 E-value=0.95 Score=41.94 Aligned_cols=101 Identities=20% Similarity=0.210 Sum_probs=62.4
Q ss_pred CCCCCcceeecCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEec-CC-------------------------
Q 028838 87 VSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLS-FT------------------------- 140 (203)
Q Consensus 87 v~~~dtst~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~ls-s~------------------------- 140 (203)
.+.+|++|+|+|.++..||++|.-... .++. ..+.+.++|...++- |.
T Consensus 6 ~~~~dLst~~~Gl~l~NP~i~ASgp~t-----~~~e-~~~~~~~~g~GAVV~KTi~~~~~~~~n~~pr~~~~~~g~~~~~ 79 (385)
T PLN02495 6 ASEPDLSVTVNGLKMPNPFVIGSGPPG-----TNYT-VMKRAFDEGWGGVIAKTVSLDASKVINVTPRYARLRAGANGSA 79 (385)
T ss_pred cCCCcceEEECCEEcCCCcEeCCccCC-----CCHH-HHHHHHhcCCeEEEeccccCCccccCCCCCeEEecCccccccc
Confidence 356799999999999999999863221 1222 222223334444441 00
Q ss_pred -------------CCCCHH----HHHh---hcCC-ceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 028838 141 -------------SSSSIE----EVAA---SCNA-VRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRL 193 (203)
Q Consensus 141 -------------ss~sle----eia~---~~~~-~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p~~ 193 (203)
+..++| ++.+ ..+. +.+.-|.-..+.+...+++++.+++|+++|-|.+-+|..
T Consensus 80 ~~n~iGl~N~~~~s~~g~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~ 153 (385)
T PLN02495 80 KGRVIGWQNIELISDRPFETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHG 153 (385)
T ss_pred ccccccccCcccccccCHHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence 001244 3322 2233 444444334578889999999999999999999988874
No 25
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=92.66 E-value=1.1 Score=40.28 Aligned_cols=38 Identities=16% Similarity=-0.006 Sum_probs=30.1
Q ss_pred CCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCC
Q 028838 153 NAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTP 191 (203)
Q Consensus 153 ~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p 191 (203)
+.+.+.|+.- .+.+...+..++++++|+++|-|.+-+|
T Consensus 99 ~~pvi~si~g-~~~~~~~~~a~~~~~~gad~iElN~s~~ 136 (325)
T cd04739 99 SIPVIASLNG-VSAGGWVDYARQIEEAGADALELNIYAL 136 (325)
T ss_pred CCeEEEEeCC-CCHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 3567778743 4567778999999999999999999864
No 26
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=92.59 E-value=1.4 Score=38.82 Aligned_cols=40 Identities=18% Similarity=0.151 Sum_probs=33.4
Q ss_pred CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 028838 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRL 193 (203)
Q Consensus 154 ~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p~~ 193 (203)
.+...|+.-..+.+...+.+++++++|+++|-+.+.+|..
T Consensus 100 ~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~ 139 (299)
T cd02940 100 KILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHG 139 (299)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence 4667787655478888889999999999999999999986
No 27
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=92.11 E-value=0.71 Score=42.15 Aligned_cols=107 Identities=19% Similarity=0.166 Sum_probs=66.2
Q ss_pred Hhhcccccccccc--CCCCCCcceeecCc-----ccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCCCCH
Q 028838 73 AFHRITFRPRILV--DVSRIDLSTTILDY-----KISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSI 145 (203)
Q Consensus 73 af~~i~L~pRvL~--dv~~~dtst~l~G~-----~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sl 145 (203)
.|+++.|+|+--. .=+++|++++|-.+ .+..||+-|.|-- -++..+|.+-++.|...++-- ..++
T Consensus 9 ~f~DVll~P~~s~v~sR~evdl~~~~~~~~~~~~~~~iPii~AnMdt------v~~~~mA~~la~~g~~~~iHk--~~~~ 80 (343)
T TIGR01305 9 DFKDVLLRPKRSTLKSRADVELERTFTFRNSKQTYSGVPIIAANMDT------VGTFEMAAALSQHSIFTAIHK--HYSV 80 (343)
T ss_pred CccceEEecCcCccCcHHHceeeEEEccccCCceeeCCceEecCCCc------ccCHHHHHHHHHCCCeEEEee--CCCH
Confidence 4899999998322 22678999998644 7899999887421 367889999999999999854 3356
Q ss_pred HHHHh----hcCCceeEEEee-eCCHHHHHHHHHHHHHcC--CcEEEEee
Q 028838 146 EEVAA----SCNAVRFYQLYV-FKKRDIAATLVQRAERNG--FKALVLTA 188 (203)
Q Consensus 146 eeia~----~~~~~~w~Qly~-~~d~~~~~~ll~rAe~aG--~~AlvvTV 188 (203)
|+-++ ..+... -++.+ -.-.+...+.++...++| +++|+|++
T Consensus 81 e~~~~~v~~~~~~~~-~~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~ 129 (343)
T TIGR01305 81 DEWKAFATNSSPDCL-QNVAVSSGSSDNDLEKMTSILEAVPQLKFICLDV 129 (343)
T ss_pred HHHHHHHHhhccccc-ceEEEEeccCHHHHHHHHHHHhcCCCCCEEEEEC
Confidence 65332 222211 11222 122333345556556665 66665544
No 28
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=91.90 E-value=1.4 Score=39.26 Aligned_cols=88 Identities=16% Similarity=0.155 Sum_probs=56.7
Q ss_pred CcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCC-CCCC-------HHHHHhhcC--CceeEEEeeeCCHH
Q 028838 98 DYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFT-SSSS-------IEEVAASCN--AVRFYQLYVFKKRD 167 (203)
Q Consensus 98 G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~-ss~s-------leeia~~~~--~~~w~Qly~~~d~~ 167 (203)
|..+..|+++|||.+.. +.+.-+.+.+.|..++.+-+ +..+ ...+....+ .+...||. -.|.+
T Consensus 3 ~~~~~~~l~lAPm~~~t------~~~fR~l~~~~g~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~-g~~~~ 75 (319)
T TIGR00737 3 NIQLKSRVVLAPMAGVT------DSPFRRLVAEYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLF-GSDPD 75 (319)
T ss_pred CccCCCCEEecCCCCCC------cHHHHHHHHHHCCCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEe-CCCHH
Confidence 45788999999986532 23444555666655554422 1111 222222222 46678874 44678
Q ss_pred HHHHHHHHHHHcCCcEEEEeecCCC
Q 028838 168 IAATLVQRAERNGFKALVLTADTPR 192 (203)
Q Consensus 168 ~~~~ll~rAe~aG~~AlvvTVD~p~ 192 (203)
...+..++++++||++|=|..-+|.
T Consensus 76 ~~~~aa~~~~~~G~d~IelN~gcP~ 100 (319)
T TIGR00737 76 TMAEAAKINEELGADIIDINMGCPV 100 (319)
T ss_pred HHHHHHHHHHhCCCCEEEEECCCCH
Confidence 8888999999999999999888774
No 29
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=91.88 E-value=1.9 Score=37.82 Aligned_cols=96 Identities=14% Similarity=0.160 Sum_probs=59.9
Q ss_pred CcceeecCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEe-cCC--------------------------CCC
Q 028838 91 DLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVL-SFT--------------------------SSS 143 (203)
Q Consensus 91 dtst~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~l-ss~--------------------------ss~ 143 (203)
|++|+++|.++..||++|+-.. ...+ ..++...+.|..+++ +|. .+.
T Consensus 1 ~l~~~~~G~~~~nPv~~aag~~----~~~~--~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~ 74 (301)
T PRK07259 1 RLSVELPGLKLKNPVMPASGTF----GFGG--EYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNP 74 (301)
T ss_pred CCceEECCEECCCCcEECCcCC----CCCH--HHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCc
Confidence 6799999999999999986212 1122 334444445444433 222 223
Q ss_pred CHHHHH----hhc---CCceeEEEeeeCCHHHHHHHHHHHHHcC-CcEEEEeecCCCC
Q 028838 144 SIEEVA----ASC---NAVRFYQLYVFKKRDIAATLVQRAERNG-FKALVLTADTPRL 193 (203)
Q Consensus 144 sleeia----~~~---~~~~w~Qly~~~d~~~~~~ll~rAe~aG-~~AlvvTVD~p~~ 193 (203)
+++... ... ..+...||-- .+.+...+..++++++| +++|=+.+-+|..
T Consensus 75 g~~~~~~~~~~~~~~~~~p~i~si~g-~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~ 131 (301)
T PRK07259 75 GVDAFIEEELPWLEEFDTPIIANVAG-STEEEYAEVAEKLSKAPNVDAIELNISCPNV 131 (301)
T ss_pred CHHHHHHHHHHHHhccCCcEEEEecc-CCHHHHHHHHHHHhccCCcCEEEEECCCCCC
Confidence 344332 221 3456677743 35777888999999999 9999998766543
No 30
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=91.32 E-value=3.2 Score=36.21 Aligned_cols=42 Identities=10% Similarity=0.097 Sum_probs=33.3
Q ss_pred CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCc
Q 028838 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRR 196 (203)
Q Consensus 154 ~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p~~g~R 196 (203)
.+...||.- .+.+...+..++++++|+++|-|++-+|....|
T Consensus 90 ~p~ivsi~g-~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~ 131 (296)
T cd04740 90 TPVIASIAG-STVEEFVEVAEKLADAGADAIELNISCPNVKGG 131 (296)
T ss_pred CcEEEEEec-CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCC
Confidence 466778754 356777889999999999999999998876443
No 31
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=90.86 E-value=2.3 Score=36.85 Aligned_cols=41 Identities=24% Similarity=0.263 Sum_probs=32.5
Q ss_pred CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCC
Q 028838 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGR 195 (203)
Q Consensus 154 ~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p~~g~ 195 (203)
.+...||.-. +.+...+.+++++++|+++|-|++.+|....
T Consensus 99 ~pvi~si~g~-~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~ 139 (289)
T cd02810 99 QPLIASVGGS-SKEDYVELARKIERAGAKALELNLSCPNVGG 139 (289)
T ss_pred CeEEEEeccC-CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCC
Confidence 4556676443 5778888999999999999999999987643
No 32
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=90.73 E-value=5.1 Score=35.90 Aligned_cols=47 Identities=15% Similarity=0.178 Sum_probs=33.5
Q ss_pred chhhHHHHHHHhhccccccccc-cCCCCCCcceeecCcccCcceEecc
Q 028838 63 DEHTLKENVEAFHRITFRPRIL-VDVSRIDLSTTILDYKISAPIIIAP 109 (203)
Q Consensus 63 de~T~~~N~~af~~i~L~pRvL-~dv~~~dtst~l~G~~~s~Pi~iaP 109 (203)
-|.+.+-...+++.+...|=.+ +....+|++|+++|.++..||++|.
T Consensus 9 ~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Gl~l~nPi~~As 56 (327)
T cd04738 9 PETAHRLAIRALKLGLGPPLLLLLVYDDPRLEVEVFGLTFPNPVGLAA 56 (327)
T ss_pred HHHHHHHHHHHHHhcCCCCCccccCCCCCCcceEECCEECCCCCEeCc
Confidence 3556666666666655555221 3456789999999999999998865
No 33
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=90.70 E-value=2.1 Score=39.17 Aligned_cols=70 Identities=27% Similarity=0.307 Sum_probs=50.1
Q ss_pred HhhccccccccccCC--CCCCcceeec-----CcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCCCCH
Q 028838 73 AFHRITFRPRILVDV--SRIDLSTTIL-----DYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSI 145 (203)
Q Consensus 73 af~~i~L~pRvL~dv--~~~dtst~l~-----G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sl 145 (203)
.|+++.|+|+.-.=. +++|++.+|- .+.+..||+-|+|-- -++..+|.+-++.|...++-- ..++
T Consensus 10 ~f~DVll~P~~s~v~sRsevdl~~~~~~~~~~~~~~giPii~AnMdT------V~~~~mA~~la~~g~~~~iHk--~~~~ 81 (346)
T PRK05096 10 GFKDVLIRPKRSTLKSRSDVELERQFTFKHSGQSWSGVPIIAANMDT------VGTFEMAKALASFDILTAVHK--HYSV 81 (346)
T ss_pred CceeEEEecCcCccccHHHceecceeeeecccccccCCceEecCCCc------cccHHHHHHHHHCCCeEEEec--CCCH
Confidence 489999999854422 4678877764 345679999988532 267889999999999999943 3467
Q ss_pred HHHHh
Q 028838 146 EEVAA 150 (203)
Q Consensus 146 eeia~ 150 (203)
|+-++
T Consensus 82 e~~~~ 86 (346)
T PRK05096 82 EEWAA 86 (346)
T ss_pred HHHHH
Confidence 76443
No 34
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=89.03 E-value=11 Score=34.00 Aligned_cols=99 Identities=11% Similarity=0.073 Sum_probs=57.6
Q ss_pred CCCCCcceeecCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEec-CCC------------------------
Q 028838 87 VSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLS-FTS------------------------ 141 (203)
Q Consensus 87 v~~~dtst~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~ls-s~s------------------------ 141 (203)
..+++++|+++|.++..||++|. |.. .++| ..+...++|..+++- |.+
T Consensus 44 ~~~~~L~~~~~Gl~l~nPi~~As-G~~----~~~~--~~~~~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~ 116 (344)
T PRK05286 44 YTDPRLPVTVMGLTFPNPVGLAA-GFD----KNGE--AIDALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINR 116 (344)
T ss_pred CCCCCCceEECCEECCCCCEECC-CCC----CChH--HHHHHHHcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccC
Confidence 35678999999999999999865 322 2443 334455666555442 221
Q ss_pred ----CCCHHH----HHhh-cCCceeEEEeeeC------CHHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 028838 142 ----SSSIEE----VAAS-CNAVRFYQLYVFK------KRDIAATLVQRAERNGFKALVLTADTPRL 193 (203)
Q Consensus 142 ----s~slee----ia~~-~~~~~w~Qly~~~------d~~~~~~ll~rAe~aG~~AlvvTVD~p~~ 193 (203)
+..+|. +.+. ..-+.+..+.-.. ..+...+++++++. ++++|.+.+=+|..
T Consensus 117 ~gl~n~g~~~~~~~l~~~~~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~ 182 (344)
T PRK05286 117 MGFNNDGADALAERLKKAYRGIPLGINIGKNKDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPNT 182 (344)
T ss_pred CCCCCHhHHHHHHHHHHhcCCCcEEEEEecCCCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCCC
Confidence 112333 3222 1234555654321 23455556665544 59999999988876
No 35
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=88.56 E-value=6.6 Score=34.35 Aligned_cols=95 Identities=15% Similarity=0.217 Sum_probs=59.0
Q ss_pred cceeecCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEec-C--------------------------CCCCC
Q 028838 92 LSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLS-F--------------------------TSSSS 144 (203)
Q Consensus 92 tst~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~ls-s--------------------------~ss~s 144 (203)
++|+++|.++..||++||.-.. ...| ..+...+.|..+++. | +.+.+
T Consensus 1 l~~~~~g~~l~npi~~aag~~~----~~~~--~~~~~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g 74 (300)
T TIGR01037 1 LEVELFGIRFKNPLILASGIMG----SGVE--SLRRIDRSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPG 74 (300)
T ss_pred CcEEECCEECCCCCEeCCcCCC----CCHH--HHHHHHHcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcC
Confidence 4789999999999999993211 1122 122233346655554 1 12223
Q ss_pred HHHH----Hhhc---CCceeEEEeeeCCHHHHHHHHHHHHHcC--CcEEEEeecCCCC
Q 028838 145 IEEV----AASC---NAVRFYQLYVFKKRDIAATLVQRAERNG--FKALVLTADTPRL 193 (203)
Q Consensus 145 leei----a~~~---~~~~w~Qly~~~d~~~~~~ll~rAe~aG--~~AlvvTVD~p~~ 193 (203)
++.. .... +.+...||.- .+.+...+..++.++++ +++|-+.+=+|..
T Consensus 75 ~~~~~~~~~~~~~~~~~pl~~qi~g-~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~ 131 (300)
T TIGR01037 75 VEAFLEELKPVREEFPTPLIASVYG-SSVEEFAEVAEKLEKAPPYVDAYELNLSCPHV 131 (300)
T ss_pred HHHHHHHHHHHhccCCCcEEEEeec-CCHHHHHHHHHHHHhccCccCEEEEECCCCCC
Confidence 4433 2211 2467889854 35677778888888874 8999998888875
No 36
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=86.98 E-value=8 Score=35.70 Aligned_cols=39 Identities=13% Similarity=0.122 Sum_probs=32.4
Q ss_pred CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCCC
Q 028838 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPR 192 (203)
Q Consensus 154 ~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p~ 192 (203)
.+...||.-..+.+...+..+.++++|+++|-+.+-.|.
T Consensus 100 ~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~ 138 (420)
T PRK08318 100 RALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPH 138 (420)
T ss_pred ceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 455788865546788889999999999999999999997
No 37
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=85.68 E-value=8.2 Score=34.59 Aligned_cols=38 Identities=16% Similarity=-0.017 Sum_probs=28.5
Q ss_pred CCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCC
Q 028838 153 NAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTP 191 (203)
Q Consensus 153 ~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p 191 (203)
+.+...|+... +.+...+.+++++++|+++|-+.+-.|
T Consensus 101 ~~pvi~sI~g~-~~~e~~~~a~~~~~agad~ielN~scp 138 (334)
T PRK07565 101 DIPVIASLNGS-SAGGWVDYARQIEQAGADALELNIYYL 138 (334)
T ss_pred CCcEEEEeccC-CHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 34667787553 456667899999999999999987653
No 38
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=85.61 E-value=10 Score=33.74 Aligned_cols=96 Identities=11% Similarity=0.095 Sum_probs=57.8
Q ss_pred CcceeecCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEec-CC--------------------------CCC
Q 028838 91 DLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLS-FT--------------------------SSS 143 (203)
Q Consensus 91 dtst~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~ls-s~--------------------------ss~ 143 (203)
|++|+++|.+|..||++|.-... ..+|. .+...+.|..+++- |. .+.
T Consensus 1 dL~~~~~Gl~l~NPv~~AsG~~~----~~~e~--~~~~~~~g~Gavv~ktit~~p~~gn~~pr~~~~~~~~~N~~Gl~n~ 74 (310)
T PRK02506 1 STSTQIAGFKFDNCLMNAAGVYC----MTKEE--LEEVEASAAGAFVTKSATLEPRPGNPEPRYADTPLGSINSMGLPNL 74 (310)
T ss_pred CCceEECCEECCCCCEeCCCCCC----CCHHH--HHHHHHcCCcEEEeCccCCCCCCCCCCCeEEECcchhhccCCCCCc
Confidence 67899999999999999862221 12332 22244455444432 22 233
Q ss_pred CHHHHHhh-------cC-CceeEEEeeeCCHHHHHHHHHHHHHcC-CcEEEEeecCCCC
Q 028838 144 SIEEVAAS-------CN-AVRFYQLYVFKKRDIAATLVQRAERNG-FKALVLTADTPRL 193 (203)
Q Consensus 144 sleeia~~-------~~-~~~w~Qly~~~d~~~~~~ll~rAe~aG-~~AlvvTVD~p~~ 193 (203)
.++.+.+. .+ .+...++ .-.+.+...++.++++++| +++|-+-+-+|-.
T Consensus 75 g~~~~~~~i~~~~~~~~~~pvI~Si-~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~ 132 (310)
T PRK02506 75 GFDYYLDYVLELQKKGPNKPHFLSV-VGLSPEETHTILKKIQASDFNGLVELNLSCPNV 132 (310)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEE-EeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCC
Confidence 34433221 11 3334444 2345677778999999998 8999999998843
No 39
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=85.07 E-value=3.9 Score=34.12 Aligned_cols=80 Identities=19% Similarity=0.101 Sum_probs=44.7
Q ss_pred CcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHH-------HhhcCCceeEEEeeeCCHHHHHHHHH
Q 028838 102 SAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEV-------AASCNAVRFYQLYVFKKRDIAATLVQ 174 (203)
Q Consensus 102 s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleei-------a~~~~~~~w~Qly~~~d~~~~~~ll~ 174 (203)
..||+.|||.+. .+ ...++++.+.|..-.+|... .+.+++ .+..+.+.-+++.....+....+.++
T Consensus 2 ~~pi~~a~m~g~--~~----~~~~~~~~~~G~ig~i~~~~-~~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~ 74 (236)
T cd04730 2 RYPIIQAPMAGV--ST----PELAAAVSNAGGLGFIGAGY-LTPEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLE 74 (236)
T ss_pred CCCEECCCCCCC--CC----HHHHHHHHhCCCccccCCCC-CCHHHHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHH
Confidence 479999997554 23 34455555666433343321 123322 22221233356555432235668889
Q ss_pred HHHHcCCcEEEEee
Q 028838 175 RAERNGFKALVLTA 188 (203)
Q Consensus 175 rAe~aG~~AlvvTV 188 (203)
.++++|++.|.+.-
T Consensus 75 ~~~~~g~d~v~l~~ 88 (236)
T cd04730 75 VALEEGVPVVSFSF 88 (236)
T ss_pred HHHhCCCCEEEEcC
Confidence 99999999998853
No 40
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=83.85 E-value=5.3 Score=38.10 Aligned_cols=109 Identities=24% Similarity=0.374 Sum_probs=65.7
Q ss_pred Hhhcccccccccc-CCCCCCcceeec-CcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHh
Q 028838 73 AFHRITFRPRILV-DVSRIDLSTTIL-DYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAA 150 (203)
Q Consensus 73 af~~i~L~pRvL~-dv~~~dtst~l~-G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~ 150 (203)
.|+++.|.|..-. ..+++|++|.+- ...+..||+-|||.-. .|..+|.+-+++|=.-++. .+.++|+.++
T Consensus 19 t~ddv~l~p~~~~~~~~~v~~~t~l~~~~~l~~Pii~a~M~~v------t~~~ma~a~a~~GglGvi~--~~~~~e~~~~ 90 (495)
T PTZ00314 19 TYDDVILLPGYIDFSRDDVDLSTRLTRNIRLKIPIVSSPMDTV------TEHKMAIAMALMGGIGVIH--NNCSIEEQVE 90 (495)
T ss_pred CccceEecccccccccccccccccccCCcccCCceeecCcccc------ccHHHHHHHHHCCCeEEec--CCCCHHHHHH
Confidence 3899999998533 224578887765 3478899999987532 3456777777777666664 3567887765
Q ss_pred hcC------CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeec
Q 028838 151 SCN------AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTAD 189 (203)
Q Consensus 151 ~~~------~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD 189 (203)
... ...............+.+.++...+.++..+.|+-|
T Consensus 91 ~v~kvk~~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~ 135 (495)
T PTZ00314 91 EVRKVKRFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVD 135 (495)
T ss_pred HHhhccccccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeC
Confidence 431 100001111111223344555556788888888654
No 41
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=83.22 E-value=4.9 Score=35.87 Aligned_cols=83 Identities=14% Similarity=0.114 Sum_probs=47.7
Q ss_pred eecCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHH-------HhhcCCceeEEEeeeCCHH
Q 028838 95 TILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEV-------AASCNAVRFYQLYVFKKRD 167 (203)
Q Consensus 95 ~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleei-------a~~~~~~~w~Qly~~~d~~ 167 (203)
++|| +..||+.+||++. .. ..++.+..++|..-+++... .+.|++ .+..+.+. .+-+.....
T Consensus 6 ~~lg--i~~Pii~apM~~~--s~----~~la~avs~aGglG~l~~~~-~~~~~l~~~i~~~~~~t~~pf--gvn~~~~~~ 74 (307)
T TIGR03151 6 DLLG--IEYPIFQGGMAWV--AT----GSLAAAVSNAGGLGIIGAGN-APPDVVRKEIRKVKELTDKPF--GVNIMLLSP 74 (307)
T ss_pred HHhC--CCCCEEcCCCCCC--CC----HHHHHHHHhCCCcceecccc-CCHHHHHHHHHHHHHhcCCCc--EEeeecCCC
Confidence 4554 4579999999763 22 46788888888777777533 244433 22222231 222211111
Q ss_pred HHHHHHHHHHHcCCcEEEEee
Q 028838 168 IAATLVQRAERNGFKALVLTA 188 (203)
Q Consensus 168 ~~~~ll~rAe~aG~~AlvvTV 188 (203)
...++++.+.+.|++.|.++-
T Consensus 75 ~~~~~~~~~~~~~v~~v~~~~ 95 (307)
T TIGR03151 75 FVDELVDLVIEEKVPVVTTGA 95 (307)
T ss_pred CHHHHHHHHHhCCCCEEEEcC
Confidence 234567777788988887643
No 42
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=82.92 E-value=14 Score=28.63 Aligned_cols=74 Identities=19% Similarity=0.137 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHhcCCeEEec-CCC-----C--CC---HHHHHhhcCCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 028838 119 EGEVATARAAASCNTIMVLS-FTS-----S--SS---IEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 119 ~gE~a~AraA~~~gi~~~ls-s~s-----s--~s---leeia~~~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
+.....++.+.+.|+.++.. +.. . .. ++.+....+.+.+.|++.....+......++++++|+++|.|+
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~ 91 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIH 91 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEe
Confidence 34467777787877644332 211 1 11 4445554456788899887655555545678889999999999
Q ss_pred ecCCC
Q 028838 188 ADTPR 192 (203)
Q Consensus 188 VD~p~ 192 (203)
...+.
T Consensus 92 ~~~~~ 96 (200)
T cd04722 92 GAVGY 96 (200)
T ss_pred ccCCc
Confidence 88764
No 43
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=80.04 E-value=4.4 Score=36.02 Aligned_cols=67 Identities=16% Similarity=0.179 Sum_probs=47.0
Q ss_pred CchHHHHHHHHHHhcCCeEEecCCCC----CCHHHHH-------hhcCCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEE
Q 028838 117 NPEGEVATARAAASCNTIMVLSFTSS----SSIEEVA-------ASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALV 185 (203)
Q Consensus 117 hp~gE~a~AraA~~~gi~~~lss~ss----~sleeia-------~~~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~Alv 185 (203)
+.+--.++.+||++.+.|.++..... .+++.+. +...-|-.++| |+....+.+++|.++||.-|+
T Consensus 25 n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHL----DHg~~~e~i~~ai~~GFtSVM 100 (282)
T TIGR01858 25 NLETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTYNMPLALHL----DHHESLDDIRQKVHAGVRSAM 100 (282)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHcCCCEEe
Confidence 44555899999999999999974321 2444432 22234555555 888888999999999999877
Q ss_pred Ee
Q 028838 186 LT 187 (203)
Q Consensus 186 vT 187 (203)
++
T Consensus 101 ~D 102 (282)
T TIGR01858 101 ID 102 (282)
T ss_pred ec
Confidence 65
No 44
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=79.07 E-value=5.5 Score=37.71 Aligned_cols=107 Identities=19% Similarity=0.195 Sum_probs=57.7
Q ss_pred Hhhcccccccccc-CCCCCCcceeec-CcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHh
Q 028838 73 AFHRITFRPRILV-DVSRIDLSTTIL-DYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAA 150 (203)
Q Consensus 73 af~~i~L~pRvL~-dv~~~dtst~l~-G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~ 150 (203)
.|+++.|.|..-. ..+++|++|.+- +..+..||+-|||... .+.|++.+= ++.-|+.+ +.. +.+.|+..+
T Consensus 10 t~ddv~l~p~~~~~~~~~~~~~t~l~~~~~~~~Piv~a~m~~v----T~~ela~av-a~~GglG~-i~~--~~~~e~~~~ 81 (486)
T PRK05567 10 TFDDVLLVPAHSEVLPNDVDLSTQLTKNIRLNIPLLSAAMDTV----TEARMAIAM-AREGGIGV-IHK--NMSIEEQAE 81 (486)
T ss_pred CccceEecccccCcCcccccccchhhhhcCcCcCEEeCCCCCc----CHHHHHHHH-HhCCCCCE-ecC--CCCHHHHHH
Confidence 4899999998543 224578887764 4567799999998653 234443333 33334443 432 334555432
Q ss_pred h------cCCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 028838 151 S------CNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 151 ~------~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
. ......-.+.......-+.+.++...+.++..+.|+
T Consensus 82 ~I~~vk~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVv 124 (486)
T PRK05567 82 EVRKVKRSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVV 124 (486)
T ss_pred HHHHhhhhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEE
Confidence 2 111111112222223344455566667788777664
No 45
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=78.91 E-value=4.6 Score=35.95 Aligned_cols=67 Identities=13% Similarity=0.137 Sum_probs=46.9
Q ss_pred CchHHHHHHHHHHhcCCeEEecCCC----CCCHHHHH-------hhcCCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEE
Q 028838 117 NPEGEVATARAAASCNTIMVLSFTS----SSSIEEVA-------ASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALV 185 (203)
Q Consensus 117 hp~gE~a~AraA~~~gi~~~lss~s----s~sleeia-------~~~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~Alv 185 (203)
+.+.-.++.+||++.+.|.++...- -.+++.+. +...-|-.++| |.....+.+++|.++||.-|.
T Consensus 27 n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~VPV~lHL----DHg~~~e~i~~Ai~~GftSVM 102 (284)
T PRK09195 27 NLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHHPLALHL----DHHEKFDDIAQKVRSGVRSVM 102 (284)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHcCCCEEE
Confidence 4455689999999999999997422 13444432 22234544444 888788999999999999877
Q ss_pred Ee
Q 028838 186 LT 187 (203)
Q Consensus 186 vT 187 (203)
++
T Consensus 103 ~D 104 (284)
T PRK09195 103 ID 104 (284)
T ss_pred eC
Confidence 65
No 46
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=78.75 E-value=5.4 Score=35.35 Aligned_cols=68 Identities=22% Similarity=0.310 Sum_probs=48.0
Q ss_pred CchHHHHHHHHHHhcCCeEEecCCCC----CCHHHHHh-------hcCCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEE
Q 028838 117 NPEGEVATARAAASCNTIMVLSFTSS----SSIEEVAA-------SCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALV 185 (203)
Q Consensus 117 hp~gE~a~AraA~~~gi~~~lss~ss----~sleeia~-------~~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~Alv 185 (203)
+.+--.++.+||++.+.|.++..... .+++.++. ....|..++| |.....+.+.+|.++||..|.
T Consensus 22 n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~VPV~lHL----DH~~~~~~i~~ai~~GftSVM 97 (276)
T cd00947 22 NLETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERASVPVALHL----DHGSSFELIKRAIRAGFSSVM 97 (276)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHhCCCEEE
Confidence 44556899999999999999975322 34444332 2234555555 777777899999999999987
Q ss_pred Eee
Q 028838 186 LTA 188 (203)
Q Consensus 186 vTV 188 (203)
++-
T Consensus 98 iD~ 100 (276)
T cd00947 98 IDG 100 (276)
T ss_pred eCC
Confidence 763
No 47
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=78.21 E-value=5.5 Score=35.51 Aligned_cols=67 Identities=16% Similarity=0.203 Sum_probs=47.4
Q ss_pred CchHHHHHHHHHHhcCCeEEecCCC----CCCHHHHH-------hhcCCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEE
Q 028838 117 NPEGEVATARAAASCNTIMVLSFTS----SSSIEEVA-------ASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALV 185 (203)
Q Consensus 117 hp~gE~a~AraA~~~gi~~~lss~s----s~sleeia-------~~~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~Alv 185 (203)
+.+.-.++.+||++.+.|.++.... -.+++.+. +...-|-.++| |.....+.+++|.++||.-|.
T Consensus 27 n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHL----DHg~~~e~i~~ai~~GFtSVM 102 (286)
T PRK12738 27 NAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHL----DHHESLDDIRRKVHAGVRSAM 102 (286)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHcCCCeEe
Confidence 4455589999999999999996421 12445432 22334555555 888888999999999999877
Q ss_pred Ee
Q 028838 186 LT 187 (203)
Q Consensus 186 vT 187 (203)
++
T Consensus 103 ~D 104 (286)
T PRK12738 103 ID 104 (286)
T ss_pred ec
Confidence 65
No 48
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=78.12 E-value=18 Score=29.17 Aligned_cols=81 Identities=16% Similarity=0.139 Sum_probs=59.4
Q ss_pred eEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHhhc--C--CceeEEEeeeCCHHHHHHHHHHHHHcC
Q 028838 105 IIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASC--N--AVRFYQLYVFKKRDIAATLVQRAERNG 180 (203)
Q Consensus 105 i~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~~~--~--~~~w~Qly~~~d~~~~~~ll~rAe~aG 180 (203)
|+++++|..+ |--|-.-++++-+..|.-.+....-+++ ||++.++ . .+--.-.+--.-.++..++++...++|
T Consensus 15 vlvak~GlDg--Hd~gakvia~~l~d~GfeVi~~g~~~tp-~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G 91 (143)
T COG2185 15 VLVAKLGLDG--HDRGAKVIARALADAGFEVINLGLFQTP-EEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAG 91 (143)
T ss_pred EEEeccCccc--cccchHHHHHHHHhCCceEEecCCcCCH-HHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhC
Confidence 7899999654 8889999999999999998887766554 6666554 2 221122222345788899999999999
Q ss_pred CcEEEEee
Q 028838 181 FKALVLTA 188 (203)
Q Consensus 181 ~~AlvvTV 188 (203)
...|.|-+
T Consensus 92 ~~~i~v~~ 99 (143)
T COG2185 92 VEDILVVV 99 (143)
T ss_pred CcceEEee
Confidence 99988554
No 49
>TIGR03455 HisG_C-term ATP phosphoribosyltransferase, C-terminal domain. This domain corresponds to the C-terminal third of the HisG protein. It is absent in many lineages.
Probab=77.85 E-value=13 Score=27.88 Aligned_cols=55 Identities=9% Similarity=0.247 Sum_probs=42.9
Q ss_pred CeEEecCCCCCCHHHHHhhcC-----------CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 028838 133 TIMVLSFTSSSSIEEVAASCN-----------AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 133 i~~~lss~ss~sleeia~~~~-----------~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
-.++.=+.....++++.+..| ...|+-+...-+++.+.+++.+-+++|++.|.++
T Consensus 29 ~~~v~~Nvp~~~l~~v~~ilPg~~~PTVs~l~~~~w~AV~~vv~~~~v~~~~~~Lk~~GA~~Ilv~ 94 (100)
T TIGR03455 29 KVLLMMNVPRDNLDEVRALLPGLEGPTVSPLADEGWVAVHAVVDEKVVNELIDKLKAAGARDILVL 94 (100)
T ss_pred eeEEEEeCChhhHHHHHHhcCCCCCCCcCcCCCCCeEEEEEEEcHHHHHHHHHHHHHcCCCeEEEe
Confidence 344444566778888877643 1269888888899999999999999999999875
No 50
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=77.28 E-value=6.1 Score=35.11 Aligned_cols=67 Identities=15% Similarity=0.185 Sum_probs=45.7
Q ss_pred CchHHHHHHHHHHhcCCeEEecCCCC----CCHHHHH-------hhcCCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEE
Q 028838 117 NPEGEVATARAAASCNTIMVLSFTSS----SSIEEVA-------ASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALV 185 (203)
Q Consensus 117 hp~gE~a~AraA~~~gi~~~lss~ss----~sleeia-------~~~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~Alv 185 (203)
+.+--.++.+||++.+.|.++...-. .+++.+. +...-|..++| |.....+.+.+|.++||.-|.
T Consensus 27 n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~VPValHL----DH~~~~e~i~~ai~~GftSVM 102 (284)
T PRK12737 27 NLETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYNIPLALHL----DHHEDLDDIKKKVRAGIRSVM 102 (284)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHcCCCeEE
Confidence 44555899999999999999964321 2444332 22234544444 777778899999999999776
Q ss_pred Ee
Q 028838 186 LT 187 (203)
Q Consensus 186 vT 187 (203)
++
T Consensus 103 iD 104 (284)
T PRK12737 103 ID 104 (284)
T ss_pred ec
Confidence 65
No 51
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=77.03 E-value=18 Score=31.68 Aligned_cols=84 Identities=14% Similarity=0.033 Sum_probs=56.1
Q ss_pred cceEeccccchhccCchHHHHHHHHHHhcCCeE--EecCC---CCCCHHHHH-------hhcC--CceeEEEeeeCCHHH
Q 028838 103 APIIIAPTALHKLANPEGEVATARAAASCNTIM--VLSFT---SSSSIEEVA-------ASCN--AVRFYQLYVFKKRDI 168 (203)
Q Consensus 103 ~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~--~lss~---ss~sleeia-------~~~~--~~~w~Qly~~~d~~~ 168 (203)
.|.++.|+.-.+-.+.++-..+++-..+.|+-- ..||. .+.|.||-. ++.+ -+.+.++- . +-..
T Consensus 5 ~~a~vTPf~~dg~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~-~-~t~~ 82 (289)
T cd00951 5 LSFPVTHFDADGSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG-Y-GTAT 82 (289)
T ss_pred EEEeecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC-C-CHHH
Confidence 366777875544457777788888888888643 34443 334565432 2223 24455654 3 6788
Q ss_pred HHHHHHHHHHcCCcEEEEee
Q 028838 169 AATLVQRAERNGFKALVLTA 188 (203)
Q Consensus 169 ~~~ll~rAe~aG~~AlvvTV 188 (203)
+.++.++|+++|++++++.-
T Consensus 83 ~i~~a~~a~~~Gad~v~~~p 102 (289)
T cd00951 83 AIAYAQAAEKAGADGILLLP 102 (289)
T ss_pred HHHHHHHHHHhCCCEEEECC
Confidence 88999999999999999854
No 52
>PRK08227 autoinducer 2 aldolase; Validated
Probab=76.99 E-value=13 Score=32.68 Aligned_cols=67 Identities=13% Similarity=0.104 Sum_probs=41.9
Q ss_pred HHHHHHHHhcCCeEEecCCCCCCHHHHHhhcCCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEee
Q 028838 122 VATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTA 188 (203)
Q Consensus 122 ~a~AraA~~~gi~~~lss~ss~sleeia~~~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTV 188 (203)
...+|.|.++|.=++=-.+...++++|.+++|.|-.+.==...+.+...++++.|.++|+..+++.=
T Consensus 161 a~aaRiaaELGADiVK~~y~~~~f~~vv~a~~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GR 227 (264)
T PRK08227 161 SLATRIAAEMGAQIIKTYYVEEGFERITAGCPVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGR 227 (264)
T ss_pred HHHHHHHHHHcCCEEecCCCHHHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeech
Confidence 4556777777755554444445788888877643211100112445578899999999999887753
No 53
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=76.13 E-value=8.9 Score=35.39 Aligned_cols=48 Identities=25% Similarity=0.180 Sum_probs=37.1
Q ss_pred ccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHH
Q 028838 100 KISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVA 149 (203)
Q Consensus 100 ~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia 149 (203)
.+..||+++||++..+ -++...++|.||..+|....+|... .+.|++.
T Consensus 75 ~i~~Pi~~~~Ms~Gs~-s~~a~~aLa~aa~~aG~~~~~Gegg-~~~~~~~ 122 (392)
T cd02808 75 KLDSPFNISAMSFGAL-SKEAKEALAIGAALAGTASNTGEGG-ELPEERE 122 (392)
T ss_pred ccccceEecCCCCCcc-cHHHHHHHHHHHHhcCCceeecCCC-CCHHHHh
Confidence 4488999999986654 4567899999999999999998643 3455553
No 54
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=75.43 E-value=7.1 Score=34.69 Aligned_cols=67 Identities=21% Similarity=0.255 Sum_probs=46.4
Q ss_pred CchHHHHHHHHHHhcCCeEEecCCCC----CCHHHHHh-------hcCCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEE
Q 028838 117 NPEGEVATARAAASCNTIMVLSFTSS----SSIEEVAA-------SCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALV 185 (203)
Q Consensus 117 hp~gE~a~AraA~~~gi~~~lss~ss----~sleeia~-------~~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~Alv 185 (203)
+.+--.++.+||++.+.|.++..... ..++.++. ...-|-.++| |.....+.+.+|.++||.-|.
T Consensus 27 n~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~VPValHL----DH~~~~e~i~~ai~~GftSVM 102 (284)
T PRK12857 27 NMEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKASVPVALHL----DHGTDFEQVMKCIRNGFTSVM 102 (284)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHcCCCeEE
Confidence 33455789999999999999874321 34454432 2234544554 888788899999999999877
Q ss_pred Ee
Q 028838 186 LT 187 (203)
Q Consensus 186 vT 187 (203)
++
T Consensus 103 ~D 104 (284)
T PRK12857 103 ID 104 (284)
T ss_pred Ee
Confidence 65
No 55
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=75.23 E-value=18 Score=32.46 Aligned_cols=88 Identities=15% Similarity=0.131 Sum_probs=56.1
Q ss_pred CcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCC-CCCCH---HHHH--h--hc--CCceeEEEeeeCCHH
Q 028838 98 DYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFT-SSSSI---EEVA--A--SC--NAVRFYQLYVFKKRD 167 (203)
Q Consensus 98 G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~-ss~sl---eeia--~--~~--~~~~w~Qly~~~d~~ 167 (203)
+..+..|+++|||++. .+...-+.+.+.|..++.+.+ +..++ .+.. . .. +.+.-.|| .-.|.+
T Consensus 5 ~~~~~~~~~lAPM~g~------td~~fR~l~~~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl-~g~~~~ 77 (321)
T PRK10415 5 QYQLRNRLIAAPMAGI------TDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQI-AGSDPK 77 (321)
T ss_pred CccCCCCEEecCCCCC------CcHHHHHHHHHHCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEE-eCCCHH
Confidence 3467789999998554 234555666777766655433 22121 0111 1 11 24455788 445678
Q ss_pred HHHHHHHHHHHcCCcEEEEeecCCC
Q 028838 168 IAATLVQRAERNGFKALVLTADTPR 192 (203)
Q Consensus 168 ~~~~ll~rAe~aG~~AlvvTVD~p~ 192 (203)
...+..+++++.|++.|=+..-+|.
T Consensus 78 ~~~~aa~~~~~~g~d~IdlN~gCP~ 102 (321)
T PRK10415 78 EMADAARINVESGAQIIDINMGCPA 102 (321)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCH
Confidence 8888888888999999988888885
No 56
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=75.11 E-value=21 Score=31.48 Aligned_cols=84 Identities=14% Similarity=0.001 Sum_probs=55.9
Q ss_pred cceEeccccchhccCchHHHHHHHHHHhcCCeE--EecCC---CCCCHHHH-------HhhcC--CceeEEEeeeCCHHH
Q 028838 103 APIIIAPTALHKLANPEGEVATARAAASCNTIM--VLSFT---SSSSIEEV-------AASCN--AVRFYQLYVFKKRDI 168 (203)
Q Consensus 103 ~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~--~lss~---ss~sleei-------a~~~~--~~~w~Qly~~~d~~~ 168 (203)
.|.++.|+--.+-.+.++-..+.+-..+.|+-- +.||. .+.+.||- .++.+ -+.+.++- . +-..
T Consensus 12 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~-~-~t~~ 89 (303)
T PRK03620 12 LSFPVTPFDADGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG-G-GTAQ 89 (303)
T ss_pred EEeeeCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC-C-CHHH
Confidence 577788875444456777788888888888643 34442 34455543 22233 24455663 3 6778
Q ss_pred HHHHHHHHHHcCCcEEEEee
Q 028838 169 AATLVQRAERNGFKALVLTA 188 (203)
Q Consensus 169 ~~~ll~rAe~aG~~AlvvTV 188 (203)
+.+++++|+++|++++++.-
T Consensus 90 ~i~~~~~a~~~Gadav~~~p 109 (303)
T PRK03620 90 AIEYAQAAERAGADGILLLP 109 (303)
T ss_pred HHHHHHHHHHhCCCEEEECC
Confidence 88999999999999998854
No 57
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=74.34 E-value=3.9 Score=29.27 Aligned_cols=49 Identities=12% Similarity=0.123 Sum_probs=37.7
Q ss_pred CCCCCCHHHHHhhcC-----------CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 028838 139 FTSSSSIEEVAASCN-----------AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 139 s~ss~sleeia~~~~-----------~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
+....++|++.+..| +..|+-+...-+++.+.+++.+.+++|+..|+++
T Consensus 11 Nvp~~~l~~v~~ilPg~~~PTVs~L~~~~w~AV~~vV~~~~~~~~~~~Lk~~GA~~Ilv~ 70 (75)
T PF08029_consen 11 NVPRESLEEVIKILPGLKSPTVSPLADEDWVAVHAVVPEKQVWDLMDKLKAAGASDILVL 70 (75)
T ss_dssp EEECCCHHHHHHHS--SSS-EEEE-SSTTEEEEEEEEECCCHHHHHHHHHCTT-EEEEEE
T ss_pred eCCHHHHHHHHHhCCCCCCCceeecCCCCEEEEEEEecHHHHHHHHHHHHHcCCCEEEEE
Confidence 445667899888654 2368888877788889999999999999999875
No 58
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=73.80 E-value=3.9 Score=36.33 Aligned_cols=66 Identities=21% Similarity=0.268 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHhcCCeEEecCCCC----CCHHHH-------HhhcCCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 028838 119 EGEVATARAAASCNTIMVLSFTSS----SSIEEV-------AASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 119 ~gE~a~AraA~~~gi~~~lss~ss----~sleei-------a~~~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
+-=.++.+||++.+.|.++....+ .+++.+ ++....|-+++| |.....+.+++|.++||.-|.++
T Consensus 28 e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~~vPValHL----DH~~~~e~i~~ai~~GftSVM~D 103 (287)
T PF01116_consen 28 ETARAVIEAAEELNSPVILQISPSEVKYMGLEYLAAMVKAAAEEASVPVALHL----DHGKDFEDIKRAIDAGFTSVMID 103 (287)
T ss_dssp HHHHHHHHHHHHTTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHHSTSEEEEEE----EEE-SHHHHHHHHHHTSSEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEcchhhhhhhhHHHHHHHHHHHHHHcCCCEEeec----ccCCCHHHHHHHHHhCccccccc
Confidence 445899999999999999964321 123332 223346777777 77777899999999999998765
Q ss_pred e
Q 028838 188 A 188 (203)
Q Consensus 188 V 188 (203)
-
T Consensus 104 g 104 (287)
T PF01116_consen 104 G 104 (287)
T ss_dssp -
T ss_pred C
Confidence 4
No 59
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=73.46 E-value=18 Score=34.69 Aligned_cols=106 Identities=21% Similarity=0.303 Sum_probs=60.4
Q ss_pred Hhhcccccccccc-CCCCCCcceeec-CcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHh
Q 028838 73 AFHRITFRPRILV-DVSRIDLSTTIL-DYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAA 150 (203)
Q Consensus 73 af~~i~L~pRvL~-dv~~~dtst~l~-G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~ 150 (203)
-|+++.|.|..-. ..+++|++|.+- ...+..||+-|||.... |..+|.+-+.+|-.-++.. ..+.|+..+
T Consensus 23 tfddv~l~p~~~~~~~~~~~~~t~lt~~~~~~~Pivsa~M~~vt------~~~lA~Ama~aGGiGfI~~--~as~E~q~~ 94 (505)
T PLN02274 23 TYDDVIFHPGYIDFPADAVDLSTRLSRNIPLSIPCVSSPMDTVT------ESDMAIAMAALGGIGIVHY--NNTAEEQAA 94 (505)
T ss_pred CccceEecccccCcCCcccccccccccccCcCCCEeccCCcccc------hHHHHHHHHhCCCeEEEcC--CCCHHHHHH
Confidence 4899999998543 224567776653 34667899999985432 3455566666654445653 345665433
Q ss_pred hc------C-C--ceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeec
Q 028838 151 SC------N-A--VRFYQLYVFKKRDIAATLVQRAERNGFKALVLTAD 189 (203)
Q Consensus 151 ~~------~-~--~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD 189 (203)
.. . + ... +.+..| ..+.+.++...+.++..+.|+-|
T Consensus 95 ~Irkvk~~~~gmi~dp--vtV~pd-~tV~dA~~lm~~~~~~~lpVvD~ 139 (505)
T PLN02274 95 IVRKAKSRRVGFVSDP--VVKSPS-STISSLDELKASRGFSSVCVTET 139 (505)
T ss_pred HHHHhhcccccccCCC--eeeCCC-CcHHHHHHHHHhcCCceEEEEeC
Confidence 21 1 1 011 122222 23334455556788888888643
No 60
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=73.09 E-value=14 Score=35.29 Aligned_cols=104 Identities=15% Similarity=0.141 Sum_probs=59.0
Q ss_pred HhhccccccccccC-C-CCCCcceeecCcccCcceEeccccchhccCchHHHHHHHHHHhcC-CeEEecCCCCCCHHHHH
Q 028838 73 AFHRITFRPRILVD-V-SRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCN-TIMVLSFTSSSSIEEVA 149 (203)
Q Consensus 73 af~~i~L~pRvL~d-v-~~~dtst~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~g-i~~~lss~ss~sleeia 149 (203)
.|+++.|.|....- . +++|++|+ ++..+..||+-|||-.. .|..+|.+-++.| +..+--++ +.++..
T Consensus 14 tfddvll~p~~~~~~~~~~v~~~t~-~~~~l~~Pi~sa~Mdtv------t~~~MAiaLAr~GGiGvih~nl---~~~~q~ 83 (479)
T PRK07807 14 TYDDVFLVPSRSDVGSRFDVDLSTA-DGTGTTIPLVVANMTAV------AGRRMAETVARRGGLVVLPQDI---PIDVVA 83 (479)
T ss_pred CccceEecccccCccCCCceecccC-CCCccccceeecCCcch------hHHHHHHHHHHCCCceEeeCCC---CHHHHH
Confidence 48999999986542 2 36788887 58899999999997432 2556666666666 44333233 344433
Q ss_pred hhcCCceeEE------EeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 028838 150 ASCNAVRFYQ------LYVFKKRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 150 ~~~~~~~w~Q------ly~~~d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
+.....+-.+ +.+..+ .-+.+.+++..+.++..++|+
T Consensus 84 ~~l~~VKv~~iMi~~pvtv~~d-~tv~eA~~~m~~~~~s~l~VV 126 (479)
T PRK07807 84 EVVAWVKSRDLVFDTPVTLSPD-DTVGDALALLPKRAHGAVVVV 126 (479)
T ss_pred HHHhhcccccccccCCeEECCC-CCHHHHHHHHHhcCCceEEEE
Confidence 3211000001 112222 233445555556777777764
No 61
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=72.71 E-value=12 Score=33.34 Aligned_cols=68 Identities=18% Similarity=0.262 Sum_probs=47.6
Q ss_pred CchHHHHHHHHHHhcCCeEEecCCCC-----CCHHHHHhh-------c--CCceeEEEeeeCCHHHHHHHHHHHHHcCCc
Q 028838 117 NPEGEVATARAAASCNTIMVLSFTSS-----SSIEEVAAS-------C--NAVRFYQLYVFKKRDIAATLVQRAERNGFK 182 (203)
Q Consensus 117 hp~gE~a~AraA~~~gi~~~lss~ss-----~sleeia~~-------~--~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~ 182 (203)
+.+--.++.+||++.+.|.++..... ..++.++.. . .-|-.++| |+....+.+++|.++||.
T Consensus 27 n~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~~VPV~lHL----DHg~~~e~i~~ai~~Gft 102 (288)
T TIGR00167 27 NLETINAVLEAAAEEKSPVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPYGVPVALHL----DHGASEEDCAQAVKAGFS 102 (288)
T ss_pred CHHHHHHHHHHHHHHCCCEEEECCcchhhccCCHHHHHHHHHHHHHhccCCCcEEEEC----CCCCCHHHHHHHHHcCCC
Confidence 44555899999999999999975321 245544332 2 22444444 888888999999999999
Q ss_pred EEEEee
Q 028838 183 ALVLTA 188 (203)
Q Consensus 183 AlvvTV 188 (203)
-|.++-
T Consensus 103 SVMiDg 108 (288)
T TIGR00167 103 SVMIDG 108 (288)
T ss_pred EEEecC
Confidence 987753
No 62
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=72.36 E-value=3.3 Score=38.20 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=32.2
Q ss_pred ccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCC
Q 028838 100 KISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFT 140 (203)
Q Consensus 100 ~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ 140 (203)
+++.||+++.|++..| -++.-.++|+||..+|+.+..|..
T Consensus 63 ~l~~p~~is~MS~GaL-S~~a~~Ala~ga~~~G~~~ntGEG 102 (368)
T PF01645_consen 63 ELSIPFMISAMSYGAL-SEEAKEALAKGANMAGTASNTGEG 102 (368)
T ss_dssp HHHTTEEEEEB-CTTC--HHHHHHHHHHHHHCT-EEEETTT
T ss_pred hheeeeecccCChhhc-CHHHHHHHHHHHHHhCceEecCCC
Confidence 4789999999988776 467889999999999999988853
No 63
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=72.19 E-value=17 Score=34.07 Aligned_cols=109 Identities=23% Similarity=0.313 Sum_probs=58.7
Q ss_pred Hhhcccccccccc-CCCCCCcceeec-CcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHh
Q 028838 73 AFHRITFRPRILV-DVSRIDLSTTIL-DYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAA 150 (203)
Q Consensus 73 af~~i~L~pRvL~-dv~~~dtst~l~-G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~ 150 (203)
-|+++.|.|..-. ..+++|++|.+- +.++..||+-|||... -+.|.+.+ -|...|+..+-- +.++|+-++
T Consensus 3 t~ddv~l~p~~~~~~~~~~~~~~~~~~~~~l~~p~~s~~mdtv----Te~ema~~-ma~~gg~GvI~~---n~~~e~q~~ 74 (450)
T TIGR01302 3 TFDDVLLLPGFIDVEPDDVDLSTRITRNIKLNIPILSSPMDTV----TESRMAIA-MAREGGIGVIHR---NMSIEEQAE 74 (450)
T ss_pred CccceEecccccccCccccccccccccccCcCCCeeecCCCcc----CHHHHHHH-HHhcCCCceeec---CCCHHHHHH
Confidence 3899999998543 225678888876 7899999999997532 23343332 222223332221 334543332
Q ss_pred h----c--CCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeec
Q 028838 151 S----C--NAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTAD 189 (203)
Q Consensus 151 ~----~--~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD 189 (203)
. - ....--++.......-+.+.++...+.++..+.|+=+
T Consensus 75 ~V~~Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~ 119 (450)
T TIGR01302 75 QVKRVKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVED 119 (450)
T ss_pred HHhhhccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeC
Confidence 2 1 1110011112222333445566666788988888654
No 64
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=71.84 E-value=11 Score=34.11 Aligned_cols=68 Identities=15% Similarity=0.127 Sum_probs=46.5
Q ss_pred CchHHHHHHHHHHhcCCeEEecCCCC----CCHHHH-------HhhcC-CceeEEEeeeCCHHHHHHHHHHHHHcCCcEE
Q 028838 117 NPEGEVATARAAASCNTIMVLSFTSS----SSIEEV-------AASCN-AVRFYQLYVFKKRDIAATLVQRAERNGFKAL 184 (203)
Q Consensus 117 hp~gE~a~AraA~~~gi~~~lss~ss----~sleei-------a~~~~-~~~w~Qly~~~d~~~~~~ll~rAe~aG~~Al 184 (203)
+.+--.++.+||++.+.|.++..... ..++.+ ++..+ -|..+. -|.....+.+++|.++||.-+
T Consensus 26 n~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValH----LDHg~~~e~i~~ai~~GftSV 101 (307)
T PRK05835 26 NFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALH----LDHGTTFESCEKAVKAGFTSV 101 (307)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEcCccHHhhCChHHHHHHHHHHHHhcCCCeEEEE----CCCCCCHHHHHHHHHcCCCEE
Confidence 44556899999999999999974322 233322 22233 343333 388888899999999999998
Q ss_pred EEee
Q 028838 185 VLTA 188 (203)
Q Consensus 185 vvTV 188 (203)
+++-
T Consensus 102 M~Dg 105 (307)
T PRK05835 102 MIDA 105 (307)
T ss_pred EEeC
Confidence 7763
No 65
>PRK08185 hypothetical protein; Provisional
Probab=71.50 E-value=11 Score=33.47 Aligned_cols=67 Identities=18% Similarity=0.145 Sum_probs=41.1
Q ss_pred CchHHHHHHHHHHhcCCeEEecCCCC----CCHH------HHHhhcCCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEE
Q 028838 117 NPEGEVATARAAASCNTIMVLSFTSS----SSIE------EVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVL 186 (203)
Q Consensus 117 hp~gE~a~AraA~~~gi~~~lss~ss----~sle------eia~~~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~Alvv 186 (203)
+.+--.++.+||++.+.|.++..... .+.+ ++++...-|..+.| |+....+.+++|.++||..|++
T Consensus 22 n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~vPV~lHL----DHg~~~e~i~~ai~~Gf~SVM~ 97 (283)
T PRK08185 22 DSCFLRAVVEEAEANNAPAIIAIHPNELDFLGDNFFAYVRERAKRSPVPFVIHL----DHGATIEDVMRAIRCGFTSVMI 97 (283)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeCcchhhhccHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHcCCCEEEE
Confidence 33445788888888888888864321 1222 11222223433333 7777778888888888888665
Q ss_pred e
Q 028838 187 T 187 (203)
Q Consensus 187 T 187 (203)
+
T Consensus 98 D 98 (283)
T PRK08185 98 D 98 (283)
T ss_pred e
Confidence 4
No 66
>PRK06801 hypothetical protein; Provisional
Probab=70.91 E-value=11 Score=33.42 Aligned_cols=66 Identities=18% Similarity=0.163 Sum_probs=40.0
Q ss_pred CchHHHHHHHHHHhcCCeEEecCCCC----CCHHHHH-------hhcCCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEE
Q 028838 117 NPEGEVATARAAASCNTIMVLSFTSS----SSIEEVA-------ASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALV 185 (203)
Q Consensus 117 hp~gE~a~AraA~~~gi~~~lss~ss----~sleeia-------~~~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~Alv 185 (203)
+.+--.++.+||++.+.|.++....+ .+++.+. +...-|. .+.-|+....+.+++|.++||..|.
T Consensus 27 n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~vpV----~lHlDH~~~~e~i~~Ai~~GftSVm 102 (286)
T PRK06801 27 DSHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHDIPV----VLNLDHGLHFEAVVRALRLGFSSVM 102 (286)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCCCCE----EEECCCCCCHHHHHHHHHhCCcEEE
Confidence 34455788888888888888764321 2333332 2222332 2333777677778888888888777
Q ss_pred E
Q 028838 186 L 186 (203)
Q Consensus 186 v 186 (203)
+
T Consensus 103 ~ 103 (286)
T PRK06801 103 F 103 (286)
T ss_pred E
Confidence 6
No 67
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=70.30 E-value=11 Score=33.48 Aligned_cols=66 Identities=14% Similarity=0.172 Sum_probs=42.2
Q ss_pred chHHHHHHHHHHhcCCeEEecCCCC----CCHHHHHh-------hcCCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEE
Q 028838 118 PEGEVATARAAASCNTIMVLSFTSS----SSIEEVAA-------SCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVL 186 (203)
Q Consensus 118 p~gE~a~AraA~~~gi~~~lss~ss----~sleeia~-------~~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~Alvv 186 (203)
.+--.++.+||++.+.|.++...-. ..++.+.. ...-|..+.| |.....+.+++|.++||..+.+
T Consensus 28 ~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~vPV~lHL----DH~~~~e~i~~Ai~~GftSVM~ 103 (283)
T PRK07998 28 LETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDVPVSLHL----DHGKTFEDVKQAVRAGFTSVMI 103 (283)
T ss_pred HHHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCCCEEEEC----cCCCCHHHHHHHHHcCCCEEEE
Confidence 3445788888999888888864221 23333332 2223333333 7777778888888899988887
Q ss_pred e
Q 028838 187 T 187 (203)
Q Consensus 187 T 187 (203)
+
T Consensus 104 D 104 (283)
T PRK07998 104 D 104 (283)
T ss_pred e
Confidence 3
No 68
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=70.00 E-value=38 Score=29.44 Aligned_cols=85 Identities=13% Similarity=0.031 Sum_probs=55.4
Q ss_pred cceEeccccchhccCchHHHHHHHHHHhcCCeEE--ecCC---CCCCHHHH-------HhhcCC--ceeEEEeeeCCHHH
Q 028838 103 APIIIAPTALHKLANPEGEVATARAAASCNTIMV--LSFT---SSSSIEEV-------AASCNA--VRFYQLYVFKKRDI 168 (203)
Q Consensus 103 ~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~--lss~---ss~sleei-------a~~~~~--~~w~Qly~~~d~~~ 168 (203)
.|.++.|+.-.+-.+.++-..+.+-..+.|+--. .||. .+.|.+|- .++.++ +.+.++-- .+-+.
T Consensus 6 ~~~~~TPf~~dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~-~~~~~ 84 (292)
T PRK03170 6 ITALVTPFKEDGSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGS-NSTAE 84 (292)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCC-chHHH
Confidence 4677778755555577777888888888887433 3443 34455543 222332 44444432 35788
Q ss_pred HHHHHHHHHHcCCcEEEEee
Q 028838 169 AATLVQRAERNGFKALVLTA 188 (203)
Q Consensus 169 ~~~ll~rAe~aG~~AlvvTV 188 (203)
+.++.+.|+++|++++++.-
T Consensus 85 ~i~~a~~a~~~G~d~v~~~p 104 (292)
T PRK03170 85 AIELTKFAEKAGADGALVVT 104 (292)
T ss_pred HHHHHHHHHHcCCCEEEECC
Confidence 88999999999999999864
No 69
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=69.91 E-value=24 Score=33.55 Aligned_cols=70 Identities=19% Similarity=0.206 Sum_probs=48.7
Q ss_pred HhhccccccccccC-C-CCCCcceeecCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHh
Q 028838 73 AFHRITFRPRILVD-V-SRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAA 150 (203)
Q Consensus 73 af~~i~L~pRvL~d-v-~~~dtst~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~ 150 (203)
.|+++.|.|..-.- . +++|++|. +..++..||+-|||-- --|..+|.+-+..|=.-++-. +.++|+-++
T Consensus 13 tfddvll~p~~~~~~~~~~v~~~t~-~~~~l~~P~vsa~mdt------vTe~~MAi~~A~~GGigvIh~--n~~i~~qae 83 (475)
T TIGR01303 13 TYNDVFMVPSRSEVGSRFDVDLSTA-DGTGTTIPLVVANMTA------VAGRRMAETVARRGGIVILPQ--DLPIPAVKQ 83 (475)
T ss_pred CccceEEccCccCccCCCceeeccc-ccCccccceeeccchh------hHHHHHHHHHHHCCCEEEEeC--CCCHHHHHH
Confidence 48999999985432 2 36788887 6689999999999632 246677777777776666643 556776554
Q ss_pred h
Q 028838 151 S 151 (203)
Q Consensus 151 ~ 151 (203)
.
T Consensus 84 ~ 84 (475)
T TIGR01303 84 T 84 (475)
T ss_pred H
Confidence 3
No 70
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=69.88 E-value=34 Score=24.32 Aligned_cols=56 Identities=21% Similarity=0.347 Sum_probs=38.5
Q ss_pred CchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHhhcCCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCc
Q 028838 117 NPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRR 196 (203)
Q Consensus 117 hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~~~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p~~g~R 196 (203)
|.|||+ +++.++.+|+-.+-+|-+ - .-.....++++..+ .|+ -+++|.|.|-...|
T Consensus 19 s~DGe~-ia~~~~~~G~~~iRGSs~-----------r----------gg~~Alr~~~~~lk-~G~-~~~itpDGPrGP~r 74 (74)
T PF04028_consen 19 SRDGEL-IARVLERFGFRTIRGSSS-----------R----------GGARALREMLRALK-EGY-SIAITPDGPRGPRR 74 (74)
T ss_pred CcCHHH-HHHHHHHcCCCeEEeCCC-----------C----------cHHHHHHHHHHHHH-CCC-eEEEeCCCCCCCCC
Confidence 778886 567888888888887711 0 12345566666665 676 67999999987654
No 71
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=69.53 E-value=38 Score=30.27 Aligned_cols=38 Identities=21% Similarity=0.072 Sum_probs=30.9
Q ss_pred CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCCC
Q 028838 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPR 192 (203)
Q Consensus 154 ~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p~ 192 (203)
.+...||. -.|.+...+..++++++|++.|=+..-+|.
T Consensus 63 ~p~~vQl~-g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~ 100 (312)
T PRK10550 63 TLVRIQLL-GQYPQWLAENAARAVELGSWGVDLNCGCPS 100 (312)
T ss_pred CcEEEEec-cCCHHHHHHHHHHHHHcCCCEEEEeCCCCc
Confidence 57788985 456788888889999999999888877775
No 72
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=68.34 E-value=20 Score=32.64 Aligned_cols=69 Identities=19% Similarity=0.123 Sum_probs=51.5
Q ss_pred chHHHHHHHHHHhcCCeEEec---CCCCCCHHHHHhhcC--CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeec
Q 028838 118 PEGEVATARAAASCNTIMVLS---FTSSSSIEEVAASCN--AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTAD 189 (203)
Q Consensus 118 p~gE~a~AraA~~~gi~~~ls---s~ss~sleeia~~~~--~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD 189 (203)
-.|+.|+|+||..+|+-++.+ |-+|.=+|.+++..+ +..|+| ..|.-...+..-=|-.+|++++..|-|
T Consensus 7 ~~GNeAiA~ga~~ag~~~~a~YPiTPsTeI~e~la~~~~~~~~~~vq---~E~E~aA~~~a~GAs~aG~Ra~taTSg 80 (352)
T PRK07119 7 MKGNEAIAEAAIRAGCRCYFGYPITPQSEIPEYMSRRLPEVGGVFVQ---AESEVAAINMVYGAAATGKRVMTSSSS 80 (352)
T ss_pred ehHHHHHHHHHHHhCCCEEEEeCCCCchHHHHHHHHHHHHhCCEEEe---eCcHHHHHHHHHHHHhhCCCEEeecCc
Confidence 379999999999999998877 445544455555433 345666 567777778888888899999988833
No 73
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=67.56 E-value=15 Score=32.50 Aligned_cols=34 Identities=12% Similarity=0.166 Sum_probs=14.6
Q ss_pred HHHhcCCeEEecCCCCCCHHHHHhhc-CCceeEEE
Q 028838 127 AAASCNTIMVLSFTSSSSIEEVAASC-NAVRFYQL 160 (203)
Q Consensus 127 aA~~~gi~~~lss~ss~sleeia~~~-~~~~w~Ql 160 (203)
.|+++.+|.++--==..++|.+.++. .|..|+|+
T Consensus 69 ~a~~~~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~ 103 (281)
T PRK06806 69 AAKQAKVPVAVHFDHGMTFEKIKEALEIGFTSVMF 103 (281)
T ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEE
Confidence 44445555555321123444444443 24445554
No 74
>cd08585 GDPD_like_3 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity with Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=67.22 E-value=18 Score=30.79 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHc-CCcEEEEeecCCCC
Q 028838 167 DIAATLVQRAERN-GFKALVLTADTPRL 193 (203)
Q Consensus 167 ~~~~~ll~rAe~a-G~~AlvvTVD~p~~ 193 (203)
..+.+++++|.++ |.+-.+.|||.+..
T Consensus 195 ~~~~~~v~~~~~~~G~~v~vWTVnd~~~ 222 (237)
T cd08585 195 DLPNPFVTLARALLGMPVIVWTVRTEED 222 (237)
T ss_pred hCcCHHHHHHHHhcCCcEEEEeCCCHHH
Confidence 3456789999999 99999999997653
No 75
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=66.78 E-value=68 Score=29.12 Aligned_cols=114 Identities=16% Similarity=0.176 Sum_probs=72.8
Q ss_pred hhhhhhhcCCccchhhHHHHHHHhhccccccccccCCCCCCcceeecCcccCcceEeccccchhccC--chHHHHHHHHH
Q 028838 51 KMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLAN--PEGEVATARAA 128 (203)
Q Consensus 51 ~~~~~Y~~gGa~de~T~~~N~~af~~i~L~pRvL~dv~~~dtst~l~G~~~s~Pi~iaP~g~~~l~h--p~gE~a~AraA 128 (203)
......+.++......++++...+....-+|.+ +..|+... .|++...+.| ..-+....-.+
T Consensus 37 aGglG~ia~~~~~~e~l~~~i~~~~~~~~~p~~----------~~~f~~~~------~~v~~~~l~~~~~~~~~~~~~ii 100 (336)
T COG2070 37 AGGLGIIASGGLPAEQLRAEIRKIRALTDKPFV----------ANNFGSAP------APVNVNILVARRNAAEAGVDAII 100 (336)
T ss_pred cCCccccccccCCHHHHHHHHHHHHHhcCCcch----------hccccccc------ccchhheecccccchHHhhhhHH
Confidence 444567777777777788888777766656643 22333222 5566666655 34455555666
Q ss_pred HhcCCeEEecCCCCCCHHHHHhhc-CCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEE
Q 028838 129 ASCNTIMVLSFTSSSSIEEVAASC-NAVRFYQLYVFKKRDIAATLVQRAERNGFKALVL 186 (203)
Q Consensus 129 ~~~gi~~~lss~ss~sleeia~~~-~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~Alvv 186 (203)
..+|++.+..++...+-+.|.... -+...+.... +...-++++++|+.+||.
T Consensus 101 ~~~~vpvv~~~~g~~~~~~i~~~~~~g~~v~~~v~------~~~~A~~~~~~G~d~vI~ 153 (336)
T COG2070 101 EGAGVPVVSTSFGAPPAEFVARLKAAGIKVIHSVI------TVREALKAERAGADAVIA 153 (336)
T ss_pred hcCCCCEEeccCCCCcHHHHHHHHHcCCeEEEEeC------CHHHHHHHHhCCCCEEEe
Confidence 667999999998865666666543 2444444433 336678899999988775
No 76
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=65.44 E-value=8.7 Score=27.62 Aligned_cols=26 Identities=15% Similarity=0.300 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHcCCcEEE-EeecCC
Q 028838 166 RDIAATLVQRAERNGFKALV-LTADTP 191 (203)
Q Consensus 166 ~~~~~~ll~rAe~aG~~Alv-vTVD~p 191 (203)
.+.+++|.++|++.|+.||+ +.+|+.
T Consensus 28 d~Al~eM~e~A~~lGAnAVVGvr~d~s 54 (74)
T TIGR03884 28 DEIVENLREKVKAKGGMGLIAFRITCA 54 (74)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEcC
Confidence 36678999999999999865 666654
No 77
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=65.28 E-value=17 Score=33.41 Aligned_cols=68 Identities=16% Similarity=0.161 Sum_probs=46.2
Q ss_pred CchHHHHHHHHHHhcCCeEEecCCCC----CCHHHHH-------hhcC-CceeEEEeeeCCHHHHHHHHHHHHHcCCcEE
Q 028838 117 NPEGEVATARAAASCNTIMVLSFTSS----SSIEEVA-------ASCN-AVRFYQLYVFKKRDIAATLVQRAERNGFKAL 184 (203)
Q Consensus 117 hp~gE~a~AraA~~~gi~~~lss~ss----~sleeia-------~~~~-~~~w~Qly~~~d~~~~~~ll~rAe~aG~~Al 184 (203)
+.+--.++.+||++.+.|.++....+ .+++.+. +..+ -|..+.| |.....+.+++|.++||.-|
T Consensus 25 n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~VPValHL----DHg~~~e~i~~Ai~~GFtSV 100 (347)
T TIGR01521 25 NMEQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYPHIPVVMHQ----DHGNSPATCQRAIQLGFTSV 100 (347)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCCCCcEEEEC----CCCCCHHHHHHHHHcCCCEE
Confidence 44556899999999999999964322 2334332 2223 2433333 88888899999999999988
Q ss_pred EEee
Q 028838 185 VLTA 188 (203)
Q Consensus 185 vvTV 188 (203)
+++-
T Consensus 101 MiDg 104 (347)
T TIGR01521 101 MMDG 104 (347)
T ss_pred eecC
Confidence 7763
No 78
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=64.58 E-value=53 Score=28.91 Aligned_cols=92 Identities=15% Similarity=0.075 Sum_probs=54.4
Q ss_pred eeecCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEec-C--------------------------CCCCCHH
Q 028838 94 TTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLS-F--------------------------TSSSSIE 146 (203)
Q Consensus 94 t~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~ls-s--------------------------~ss~sle 146 (203)
++++|.++..||++|.-... .++| ..+.+.+.|..+++- | +.+..++
T Consensus 1 ~~~~Gl~l~nPi~~Asg~~~----~~~e--~~~~~~~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n~g~~ 74 (294)
T cd04741 1 VTPPGLTISPPLMNAAGPWC----TTLE--DLLELAASSTGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNLGLD 74 (294)
T ss_pred CccCCeeCCCCCEECCCCCC----CCHH--HHHHHHHcCCcEEEeCcccCCCCCCCCCCcEEecCccccccccCCCcCHH
Confidence 57899999999999862211 1233 233333355554442 1 1223343
Q ss_pred ----HHHhh------cCCceeEEEeeeCCHHHHHHHHHHHHHc---CCcEEEEeecCCCC
Q 028838 147 ----EVAAS------CNAVRFYQLYVFKKRDIAATLVQRAERN---GFKALVLTADTPRL 193 (203)
Q Consensus 147 ----eia~~------~~~~~w~Qly~~~d~~~~~~ll~rAe~a---G~~AlvvTVD~p~~ 193 (203)
++.+. ...+...|+.-. .+...+.+++.++. |+++|-+-+-+|..
T Consensus 75 ~~~~~i~~~~~~~~~~~~pvivsi~g~--~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~ 132 (294)
T cd04741 75 YYLEYIRTISDGLPGSAKPFFISVTGS--AEDIAAMYKKIAAHQKQFPLAMELNLSCPNV 132 (294)
T ss_pred HHHHHHHHHhhhccccCCeEEEECCCC--HHHHHHHHHHHHhhccccccEEEEECCCCCC
Confidence 33221 124566777433 56666777777775 69999999998875
No 79
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=63.68 E-value=23 Score=31.51 Aligned_cols=68 Identities=18% Similarity=0.174 Sum_probs=45.1
Q ss_pred CchHHHHHHHHHHhcCCeEEecCCCC-----CCHHHH-------HhhcC--CceeEEEeeeCCHHHHHHHHHHHHHcCCc
Q 028838 117 NPEGEVATARAAASCNTIMVLSFTSS-----SSIEEV-------AASCN--AVRFYQLYVFKKRDIAATLVQRAERNGFK 182 (203)
Q Consensus 117 hp~gE~a~AraA~~~gi~~~lss~ss-----~sleei-------a~~~~--~~~w~Qly~~~d~~~~~~ll~rAe~aG~~ 182 (203)
+.+.-.++.+||++.+.|.++..... .+++.+ ++... -|..+. -|+....+.+.+|.++||.
T Consensus 27 n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~~VPV~lH----LDHg~~~e~i~~ai~~Gft 102 (285)
T PRK07709 27 NLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIH----LDHGSSFEKCKEAIDAGFT 102 (285)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCCCCcEEEE----CCCCCCHHHHHHHHHcCCC
Confidence 44555789999999999999875321 233332 22222 243333 3887788889999999999
Q ss_pred EEEEee
Q 028838 183 ALVLTA 188 (203)
Q Consensus 183 AlvvTV 188 (203)
-+.++-
T Consensus 103 SVM~Dg 108 (285)
T PRK07709 103 SVMIDA 108 (285)
T ss_pred EEEEeC
Confidence 887763
No 80
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=63.33 E-value=54 Score=29.49 Aligned_cols=90 Identities=14% Similarity=0.010 Sum_probs=54.9
Q ss_pred CcccCcceEeccccchhccCchHHHHHHHHHHhcCC-eEEecCC-CC-----CCHHHHHhhcC--CceeEEEeeeCCHHH
Q 028838 98 DYKISAPIIIAPTALHKLANPEGEVATARAAASCNT-IMVLSFT-SS-----SSIEEVAASCN--AVRFYQLYVFKKRDI 168 (203)
Q Consensus 98 G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi-~~~lss~-ss-----~sleeia~~~~--~~~w~Qly~~~d~~~ 168 (203)
+.....|+++|||.+.. + ...-+.+.+.|. ..+.+-+ +. ....+.....+ .+..+||.- .|.+.
T Consensus 6 ~~~~~~~~~lAPM~g~t--d----~~fR~~~~~~g~~~~~~temv~~~~l~~~~~~~~l~~~~~e~p~~vQl~g-~~p~~ 78 (333)
T PRK11815 6 SKLPSRRFSVAPMMDWT--D----RHCRYFHRLLSRHALLYTEMVTTGAIIHGDRERLLAFDPEEHPVALQLGG-SDPAD 78 (333)
T ss_pred ccCCCCCEEEeCCCCCc--C----HHHHHHHHHhCCCCEEEECCEEeccccccCHHHHhccCCCCCcEEEEEeC-CCHHH
Confidence 45567799999985532 1 223333555554 2333322 11 11223333222 577889854 45778
Q ss_pred HHHHHHHHHHcCCcEEEEeecCCCCC
Q 028838 169 AATLVQRAERNGFKALVLTADTPRLG 194 (203)
Q Consensus 169 ~~~ll~rAe~aG~~AlvvTVD~p~~g 194 (203)
..+..++++++|++.|=|...+|..-
T Consensus 79 ~~~aA~~~~~~g~d~IdlN~gCP~~~ 104 (333)
T PRK11815 79 LAEAAKLAEDWGYDEINLNVGCPSDR 104 (333)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCHHH
Confidence 88889999999999998888887653
No 81
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=62.69 E-value=10 Score=25.44 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHcCCcEEEEeecC
Q 028838 168 IAATLVQRAERNGFKALVLTADT 190 (203)
Q Consensus 168 ~~~~ll~rAe~aG~~AlvvTVD~ 190 (203)
...+++++|++.|.+++++|==.
T Consensus 16 ~~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 16 SPEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEeeCC
Confidence 46789999999999999998443
No 82
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=61.88 E-value=21 Score=32.69 Aligned_cols=68 Identities=16% Similarity=0.186 Sum_probs=45.6
Q ss_pred CchHHHHHHHHHHhcCCeEEecCCCC----CCHHHHH-------hhcC-CceeEEEeeeCCHHHHHHHHHHHHHcCCcEE
Q 028838 117 NPEGEVATARAAASCNTIMVLSFTSS----SSIEEVA-------ASCN-AVRFYQLYVFKKRDIAATLVQRAERNGFKAL 184 (203)
Q Consensus 117 hp~gE~a~AraA~~~gi~~~lss~ss----~sleeia-------~~~~-~~~w~Qly~~~d~~~~~~ll~rAe~aG~~Al 184 (203)
+.+--.++.+||++.+.|.++..... .+++.+. +..+ -|..+ .-|.....+.+++|.++||.-|
T Consensus 27 n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~~VPVaL----HLDHg~~~e~i~~Ai~~GFtSV 102 (347)
T PRK13399 27 NMEQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYPDIPICL----HQDHGNSPATCQSAIRSGFTSV 102 (347)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcCCCcEEE----ECCCCCCHHHHHHHHhcCCCEE
Confidence 44556899999999999999864321 2333322 1222 24333 3388778889999999999988
Q ss_pred EEee
Q 028838 185 VLTA 188 (203)
Q Consensus 185 vvTV 188 (203)
+++-
T Consensus 103 MiDg 106 (347)
T PRK13399 103 MMDG 106 (347)
T ss_pred EEeC
Confidence 7763
No 83
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=61.48 E-value=23 Score=31.51 Aligned_cols=67 Identities=19% Similarity=0.166 Sum_probs=45.2
Q ss_pred CchHHHHHHHHHHhcCCeEEecCCCC----CC-HHHHH-------hhcC--CceeEEEeeeCCHHHHHHHHHHHHHcCCc
Q 028838 117 NPEGEVATARAAASCNTIMVLSFTSS----SS-IEEVA-------ASCN--AVRFYQLYVFKKRDIAATLVQRAERNGFK 182 (203)
Q Consensus 117 hp~gE~a~AraA~~~gi~~~lss~ss----~s-leeia-------~~~~--~~~w~Qly~~~d~~~~~~ll~rAe~aG~~ 182 (203)
+.+--.++.+||++.+.|.++..... .+ ++.+. +... -|-.+.| |+....+.+++|.++||.
T Consensus 27 n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vPV~lHL----DHg~~~e~i~~ai~~Gft 102 (286)
T PRK08610 27 NLEFTQAILEASQEENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLNITIPVAIHL----DHGSSFEKCKEAIDAGFT 102 (286)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCCEEEEC----CCCCCHHHHHHHHHcCCC
Confidence 44555789999999999999975322 12 44332 2222 2433333 777778899999999999
Q ss_pred EEEEe
Q 028838 183 ALVLT 187 (203)
Q Consensus 183 AlvvT 187 (203)
-+.++
T Consensus 103 SVM~D 107 (286)
T PRK08610 103 SVMID 107 (286)
T ss_pred EEEEe
Confidence 88776
No 84
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=61.37 E-value=89 Score=26.91 Aligned_cols=82 Identities=18% Similarity=0.180 Sum_probs=47.5
Q ss_pred CcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCC---C----------CCHHHH----HhhcCCceeEEEeeeC
Q 028838 102 SAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTS---S----------SSIEEV----AASCNAVRFYQLYVFK 164 (203)
Q Consensus 102 s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~s---s----------~sleei----a~~~~~~~w~Qly~~~ 164 (203)
..||+++ +++. .++.-...++.+.+.|+-++-=+++ . ..+.+| ++..+-+.+.-+-...
T Consensus 98 ~~pvi~s-i~g~---~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~ 173 (289)
T cd02810 98 GQPLIAS-VGGS---SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF 173 (289)
T ss_pred CCeEEEE-eccC---CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCC
Confidence 4577664 3322 2344466777777777654432211 1 112233 3333334454444445
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEe
Q 028838 165 KRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 165 d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
+.+.+.++++.++++|+++|+++
T Consensus 174 ~~~~~~~~a~~l~~~Gad~i~~~ 196 (289)
T cd02810 174 DLEDIVELAKAAERAGADGLTAI 196 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEE
Confidence 66678899999999999999987
No 85
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=61.08 E-value=33 Score=28.53 Aligned_cols=69 Identities=14% Similarity=0.085 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCCeEEecCCCCCCHHHHHhhcCCceeEEEeee-CCHHH----HHHHHHHHHHcCCcEEEEeecCCC
Q 028838 121 EVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVF-KKRDI----AATLVQRAERNGFKALVLTADTPR 192 (203)
Q Consensus 121 E~a~AraA~~~gi~~~lss~ss~sleeia~~~~~~~w~Qly~~-~d~~~----~~~ll~rAe~aG~~AlvvTVD~p~ 192 (203)
-..+|+++.+.|+..+... +-.-++++.+...-|.-..+|.. .+..+ ..+.++.|.++|+++|++ |.+.
T Consensus 25 ~~~~a~a~~~~G~~~~~~~-~~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~--d~~~ 98 (221)
T PRK01130 25 MAAMALAAVQGGAVGIRAN-GVEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIAL--DATL 98 (221)
T ss_pred HHHHHHHHHHCCCeEEEcC-CHHHHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEEE--eCCC
Confidence 3789999999998655532 22223344433333332223311 00001 245689999999995544 5543
No 86
>PLN02826 dihydroorotate dehydrogenase
Probab=60.99 E-value=19 Score=33.70 Aligned_cols=46 Identities=22% Similarity=0.184 Sum_probs=32.2
Q ss_pred cchhhHHHHHHHhhccccccccccCCCCCCcceeecCcccCcceEecc
Q 028838 62 EDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAP 109 (203)
Q Consensus 62 ~de~T~~~N~~af~~i~L~pRvL~dv~~~dtst~l~G~~~s~Pi~iaP 109 (203)
+-|..++--..+++.. +.|+. .....++++++++|.++..||++|.
T Consensus 46 dpE~aH~~~~~~l~~~-~~~~~-~~~~~~~L~~~~~Gl~f~NPvglAA 91 (409)
T PLN02826 46 DPETAHSLAISAAARG-LVPRE-KRPDPSVLGVEVWGRTFSNPIGLAA 91 (409)
T ss_pred CHHHHHHHHHHHHHhh-ccccc-ccCCCCCcceEECCEECCCCCEECc
Confidence 5566666666666633 33421 1245678999999999999999986
No 87
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=60.89 E-value=65 Score=28.23 Aligned_cols=84 Identities=11% Similarity=0.007 Sum_probs=55.6
Q ss_pred cceEeccccchhccCchHHHHHHHHHHhcCCeE--EecCC---CCCCHHHHH-------hhcC--CceeEEEeeeCCHHH
Q 028838 103 APIIIAPTALHKLANPEGEVATARAAASCNTIM--VLSFT---SSSSIEEVA-------ASCN--AVRFYQLYVFKKRDI 168 (203)
Q Consensus 103 ~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~--~lss~---ss~sleeia-------~~~~--~~~w~Qly~~~d~~~ 168 (203)
.|.++.|+--.+-.+.++-..+++-..+.|+-- ..||. .+.|.||-. +... .+.+.++- .+-+.
T Consensus 10 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~--~~t~~ 87 (296)
T TIGR03249 10 LSFPVTPFDADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG--GNTSD 87 (296)
T ss_pred EEeeeCCcCCCCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC--ccHHH
Confidence 466777874444457777788888888888544 34443 334555432 2222 35566664 35778
Q ss_pred HHHHHHHHHHcCCcEEEEee
Q 028838 169 AATLVQRAERNGFKALVLTA 188 (203)
Q Consensus 169 ~~~ll~rAe~aG~~AlvvTV 188 (203)
+.++.+.|+++|++++++.-
T Consensus 88 ai~~a~~a~~~Gadav~~~p 107 (296)
T TIGR03249 88 AIEIARLAEKAGADGYLLLP 107 (296)
T ss_pred HHHHHHHHHHhCCCEEEECC
Confidence 88899999999999998854
No 88
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=60.68 E-value=26 Score=30.73 Aligned_cols=41 Identities=15% Similarity=0.150 Sum_probs=30.3
Q ss_pred cccchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHh
Q 028838 109 PTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAA 150 (203)
Q Consensus 109 P~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~ 150 (203)
|-+++++. .+|=..+.+.+++.|++++..-+....++.+.+
T Consensus 57 ~~sf~G~G-~~gl~~L~~~~~~~Gl~~~Tev~d~~~v~~~~e 97 (250)
T PRK13397 57 AASFQGLG-LQGIRYLHEVCQEFGLLSVSEIMSERQLEEAYD 97 (250)
T ss_pred CcccCCCC-HHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHh
Confidence 44555553 367788899999999999888777777776655
No 89
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=60.44 E-value=87 Score=28.01 Aligned_cols=34 Identities=29% Similarity=0.377 Sum_probs=21.1
Q ss_pred cCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCC
Q 028838 101 ISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFT 140 (203)
Q Consensus 101 ~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ 140 (203)
+..||+.+||++ ...| .+|-+..++|-.=+++..
T Consensus 10 i~~PIiqapM~~--is~~----~LaaAVs~aGglG~l~~~ 43 (330)
T PF03060_consen 10 IKYPIIQAPMGG--ISTP----ELAAAVSNAGGLGFLGAG 43 (330)
T ss_dssp -SSSEEE---TT--TSSH----HHHHHHHHTTSBEEEECT
T ss_pred CCcCEEcCCCCC--CChH----HHHHHHHhCCCEeecccc
Confidence 456999999987 3333 567777778877778754
No 90
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=60.27 E-value=22 Score=32.57 Aligned_cols=33 Identities=12% Similarity=0.134 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHhcCCeEEecCCCCCCHHHHHhh
Q 028838 119 EGEVATARAAASCNTIMVLSFTSSSSIEEVAAS 151 (203)
Q Consensus 119 ~gE~a~AraA~~~gi~~~lss~ss~sleeia~~ 151 (203)
+|-..+.+.|.+.|++++.+-+...+++.+.+.
T Consensus 169 e~l~~L~~~~~~~Gl~~~t~v~d~~~~~~l~~~ 201 (360)
T PRK12595 169 EGLKILKQVADEYGLAVISEIVNPADVEVALDY 201 (360)
T ss_pred HHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHHh
Confidence 566788899999999999887777777776554
No 91
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=59.41 E-value=99 Score=27.10 Aligned_cols=85 Identities=15% Similarity=0.034 Sum_probs=53.8
Q ss_pred cceEeccccchhccCchHHHHHHHHHHhcC-C--eEEecC---CCCCCHHHHHh-------hcCC--ceeEEEeeeCCHH
Q 028838 103 APIIIAPTALHKLANPEGEVATARAAASCN-T--IMVLSF---TSSSSIEEVAA-------SCNA--VRFYQLYVFKKRD 167 (203)
Q Consensus 103 ~Pi~iaP~g~~~l~hp~gE~a~AraA~~~g-i--~~~lss---~ss~sleeia~-------~~~~--~~w~Qly~~~d~~ 167 (203)
.|.++.|+--.+-.+.++-..+.+-..+.| + .++.|| +.+.+.||-.+ ...+ +...++-- .+-+
T Consensus 5 ~~~~~TPf~~dg~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~~t~ 83 (290)
T TIGR00683 5 FSALLVSFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGS-VNLK 83 (290)
T ss_pred EeeeecCCCCCCCcCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CCHH
Confidence 366777875444456777788888877777 4 344444 34456665322 2232 33444432 3467
Q ss_pred HHHHHHHHHHHcCCcEEEEee
Q 028838 168 IAATLVQRAERNGFKALVLTA 188 (203)
Q Consensus 168 ~~~~ll~rAe~aG~~AlvvTV 188 (203)
.+.++.+.|+++|+++|++.-
T Consensus 84 ~~i~la~~a~~~Gad~v~v~~ 104 (290)
T TIGR00683 84 EAVELGKYATELGYDCLSAVT 104 (290)
T ss_pred HHHHHHHHHHHhCCCEEEEeC
Confidence 778999999999999999853
No 92
>PRK11081 tRNA guanosine-2'-O-methyltransferase; Provisional
Probab=59.18 E-value=49 Score=28.47 Aligned_cols=74 Identities=14% Similarity=0.192 Sum_probs=47.9
Q ss_pred hhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHhh-cCCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeec
Q 028838 113 HKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAAS-CNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTAD 189 (203)
Q Consensus 113 ~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~~-~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD 189 (203)
.++-.|..=-++.|.|.+.|+.-+...........+... .+...|..++...|.+ +.++..++.|+.-+..+..
T Consensus 25 d~V~~p~NlGAIiRta~AfGv~~V~~v~~~~~~~~~~~~s~Ga~~wv~i~~~~~~~---~~i~~lk~~g~~i~at~~~ 99 (229)
T PRK11081 25 EQVHKPHNVSAIIRTADAVGVHEVHAVWPGSRMRTMGSTAAGSNSWVQVKTHRTIG---DAVAHLKGQGMQILATHLS 99 (229)
T ss_pred eCCCCcchHHHHHHHHHHhCCCeEEEecCCCccchhhhhcCCchheEEEEEeCCHH---HHHHHHHhCCCEEEEEeCC
Confidence 344345455689999999999766433333334444333 3567899988877654 4555555889988877753
No 93
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=58.56 E-value=26 Score=32.17 Aligned_cols=68 Identities=16% Similarity=0.167 Sum_probs=44.8
Q ss_pred CchHHHHHHHHHHhcCCeEEecCCCC----CCHHHHHh-------hcC-CceeEEEeeeCCHHHHHHHHHHHHHcCCcEE
Q 028838 117 NPEGEVATARAAASCNTIMVLSFTSS----SSIEEVAA-------SCN-AVRFYQLYVFKKRDIAATLVQRAERNGFKAL 184 (203)
Q Consensus 117 hp~gE~a~AraA~~~gi~~~lss~ss----~sleeia~-------~~~-~~~w~Qly~~~d~~~~~~ll~rAe~aG~~Al 184 (203)
+.+--.++.+||++.+.|.++..... ..++.+.. ..+ -|..+ .-|.....+.+++|.++||.-|
T Consensus 27 n~e~~~avi~AAee~~sPvIiq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPVal----HLDHg~~~e~i~~ai~~GftSV 102 (347)
T PRK09196 27 NLEQVQAIMEAADETDSPVILQASAGARKYAGEPFLRHLILAAVEEYPHIPVVM----HQDHGNSPATCQRAIQLGFTSV 102 (347)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCccHhhhCCHHHHHHHHHHHHHhCCCCcEEE----ECCCCCCHHHHHHHHHcCCCEE
Confidence 44455899999999999999864322 22333221 122 23333 3377777888999999999988
Q ss_pred EEee
Q 028838 185 VLTA 188 (203)
Q Consensus 185 vvTV 188 (203)
+++-
T Consensus 103 MiDg 106 (347)
T PRK09196 103 MMDG 106 (347)
T ss_pred EecC
Confidence 7763
No 94
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=58.28 E-value=41 Score=31.19 Aligned_cols=66 Identities=23% Similarity=0.256 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHhcCCeEEec---CCCCCCHHHHHhhcC----CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 028838 119 EGEVATARAAASCNTIMVLS---FTSSSSIEEVAASCN----AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 119 ~gE~a~AraA~~~gi~~~ls---s~ss~sleeia~~~~----~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
.|+.|+|.||..+|.-+..+ |-+|.=+|.+++..+ +..|.|. .|.-.....+-=|-.+|++++.-|
T Consensus 7 ~GNeAiA~ga~~ag~~~~a~YPITPsTei~e~la~~~~~G~~~~~~~~~---E~E~aA~~~aiGAs~aGaRa~TaT 79 (390)
T PRK08366 7 SGNYAAAYAALHARVQVVAAYPITPQTSIIEKIAEFIANGEADIQYVPV---ESEHSAMAACIGASAAGARAFTAT 79 (390)
T ss_pred eHHHHHHHHHHHhCCCEEEEECCCChhHHHHHHHHHhhCCCCCeEEEEe---CCHHHHHHHHHHHHhhCCCeEeee
Confidence 69999999999999998887 455554566666543 3456664 667667777777888999887655
No 95
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=57.40 E-value=27 Score=30.72 Aligned_cols=25 Identities=8% Similarity=0.262 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHcCCcEEEEeecCCC
Q 028838 168 IAATLVQRAERNGFKALVLTADTPR 192 (203)
Q Consensus 168 ~~~~ll~rAe~aG~~AlvvTVD~p~ 192 (203)
.+.++++++.++|....+.|||.+.
T Consensus 249 ~~~~~v~~~~~~G~~v~vWTVNd~~ 273 (300)
T cd08612 249 MRPSLFRHLQKRGIQVYGWVLNDEE 273 (300)
T ss_pred CCHHHHHHHHHCCCEEEEeecCCHH
Confidence 4678999999999999999999753
No 96
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=57.16 E-value=90 Score=26.76 Aligned_cols=129 Identities=16% Similarity=0.166 Sum_probs=67.7
Q ss_pred hhhcCCccchhhHHHHHHHhhcccc---ccccccCC--CCCCcc-eeecCcccCcceEeccccchhccCchHHHHHHHHH
Q 028838 55 DFYAGGAEDEHTLKENVEAFHRITF---RPRILVDV--SRIDLS-TTILDYKISAPIIIAPTALHKLANPEGEVATARAA 128 (203)
Q Consensus 55 ~Y~~gGa~de~T~~~N~~af~~i~L---~pRvL~dv--~~~dts-t~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA 128 (203)
.-++||.+.-.++..=...++=+.| .|.--... -.+.++ +.....-+..|++.-++.+. ..+-+..+.++.
T Consensus 5 ~l~SGGKDS~~al~~a~~~~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~~~---~e~~~e~l~~~l 81 (223)
T TIGR00290 5 ALISGGKDSCLALYHALKEHEVISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKLYTEGT---EEDEVEELKGIL 81 (223)
T ss_pred EEecCcHHHHHHHHHHHHhCeeEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEeecCCC---ccHHHHHHHHHH
Confidence 4568999888887664443332222 11110000 001111 11234455667655443222 123446677777
Q ss_pred HhcCCeEEec-CCCCC----CHHHHHhhcC----CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCCCCC
Q 028838 129 ASCNTIMVLS-FTSSS----SIEEVAASCN----AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLG 194 (203)
Q Consensus 129 ~~~gi~~~ls-s~ss~----sleeia~~~~----~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p~~g 194 (203)
.+.|+-.++. ...+. -+|.+++..+ .|.| ..|+ .++++...++|++++++.||+..++
T Consensus 82 ~~~gv~~vv~GdI~s~~qr~~~e~v~~~lgl~~~~PLW-----~~~~---~~ll~e~i~~G~~aiIv~v~a~gL~ 148 (223)
T TIGR00290 82 HTLDVEAVVFGAIYSEYQKTRIERVCRELGLKSFAPLW-----HRDP---EKLMEEFVEEKFEARIIAVAAEGLD 148 (223)
T ss_pred HHcCCCEEEECCcccHHHHHHHHHHHHhcCCEEecccc-----CCCH---HHHHHHHHHcCCeEEEEEEecCCCC
Confidence 7778755443 33332 3345555543 2333 2343 3577777789999999999987554
No 97
>cd08600 GDPD_EcGlpQ_like Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli periplasmic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), GlpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the E. coli glp operon codes for a periplasmic phosphodiesterase GlpQ, which is the prototype of this family. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GP
Probab=56.44 E-value=60 Score=28.99 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.4
Q ss_pred HHHHHHHHHcCCcEEEEeecCCCC
Q 028838 170 ATLVQRAERNGFKALVLTADTPRL 193 (203)
Q Consensus 170 ~~ll~rAe~aG~~AlvvTVD~p~~ 193 (203)
.++|++|.++|....+.|||.+-.
T Consensus 266 ~~~V~~ah~~Gl~V~~wTvn~~~~ 289 (318)
T cd08600 266 TDLVKDAHEAGLEVHPYTVRKDAL 289 (318)
T ss_pred HHHHHHHHHcCCEEEEEeccCCcc
Confidence 488999999999999999998853
No 98
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=56.40 E-value=32 Score=31.37 Aligned_cols=34 Identities=24% Similarity=0.167 Sum_probs=27.2
Q ss_pred chHHHHHHHHHHhcCCeEEecCCCCCCHHHHHhh
Q 028838 118 PEGEVATARAAASCNTIMVLSFTSSSSIEEVAAS 151 (203)
Q Consensus 118 p~gE~a~AraA~~~gi~~~lss~ss~sleeia~~ 151 (203)
.+|-..+.+++.+.|++++..-+...+++.+.+.
T Consensus 143 ~~gL~~L~~~~~~~Gl~v~tev~d~~~~~~l~~~ 176 (335)
T PRK08673 143 EEGLKLLAEAREETGLPIVTEVMDPRDVELVAEY 176 (335)
T ss_pred HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHh
Confidence 3455778889999999999988887777777654
No 99
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=56.13 E-value=1.1e+02 Score=26.43 Aligned_cols=84 Identities=17% Similarity=0.104 Sum_probs=48.2
Q ss_pred ceEeccccchhccCchHHHHHHHHHHhcCCeE--EecCC---CCCCHHHH-------HhhcCC--ceeEEEeeeCCHHHH
Q 028838 104 PIIIAPTALHKLANPEGEVATARAAASCNTIM--VLSFT---SSSSIEEV-------AASCNA--VRFYQLYVFKKRDIA 169 (203)
Q Consensus 104 Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~--~lss~---ss~sleei-------a~~~~~--~~w~Qly~~~d~~~~ 169 (203)
|.++.|+--.+-.+.++-...++-..+.|+-- +.||. .+.|.+|- .++.++ +.+.++- ..+-+.+
T Consensus 7 ~~~~TPf~~dg~id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~-~~st~~~ 85 (289)
T PF00701_consen 7 PALITPFNADGSIDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVG-ANSTEEA 85 (289)
T ss_dssp EEE---BETTSSB-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEE-SSSHHHH
T ss_pred eeeeCCCCCCcCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCc-chhHHHH
Confidence 55666764444446667778888777877743 33332 23344432 222332 3444432 2367888
Q ss_pred HHHHHHHHHcCCcEEEEee
Q 028838 170 ATLVQRAERNGFKALVLTA 188 (203)
Q Consensus 170 ~~ll~rAe~aG~~AlvvTV 188 (203)
.++.+.|+++|+++++++-
T Consensus 86 i~~a~~a~~~Gad~v~v~~ 104 (289)
T PF00701_consen 86 IELARHAQDAGADAVLVIP 104 (289)
T ss_dssp HHHHHHHHHTT-SEEEEEE
T ss_pred HHHHHHHhhcCceEEEEec
Confidence 9999999999999999865
No 100
>PF05226 CHASE2: CHASE2 domain; InterPro: IPR007890 CHASE2 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE2 domains are found in histidine kinases, adenylate cyclases, serine/threonine kinases and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE2 domains are not known at this time [].
Probab=55.80 E-value=15 Score=31.96 Aligned_cols=32 Identities=22% Similarity=0.095 Sum_probs=28.2
Q ss_pred eeCCHHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 028838 162 VFKKRDIAATLVQRAERNGFKALVLTADTPRL 193 (203)
Q Consensus 162 ~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p~~ 193 (203)
++.+|+...++|++..++|+++|++++.-.-.
T Consensus 59 ~Pw~R~~~A~ll~~L~~~ga~~I~~Di~f~~~ 90 (310)
T PF05226_consen 59 WPWPRSVYARLLDRLAAAGAKAIGFDILFDEP 90 (310)
T ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEEeeecCC
Confidence 56789999999999999999999999976544
No 101
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=55.41 E-value=36 Score=29.30 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecCCCC
Q 028838 167 DIAATLVQRAERNGFKALVLTADTPRL 193 (203)
Q Consensus 167 ~~~~~ll~rAe~aG~~AlvvTVD~p~~ 193 (203)
..+.++++++.++|.+..+.|||.+..
T Consensus 215 ~~~~~~v~~~~~~G~~v~vWTVn~~~~ 241 (258)
T cd08573 215 DISSAYVRYWRARGIRVIAWTVNTPTE 241 (258)
T ss_pred hcCHHHHHHHHHCCCEEEEEecCCHHH
Confidence 356789999999999999999998653
No 102
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=55.33 E-value=28 Score=31.60 Aligned_cols=68 Identities=15% Similarity=0.203 Sum_probs=45.4
Q ss_pred CchHHHHHHHHHHhcCCeEEecCCCC----CC---HHHHH-------hhc--CCceeEEEeeeCCHHHHHHHHHHHHHcC
Q 028838 117 NPEGEVATARAAASCNTIMVLSFTSS----SS---IEEVA-------ASC--NAVRFYQLYVFKKRDIAATLVQRAERNG 180 (203)
Q Consensus 117 hp~gE~a~AraA~~~gi~~~lss~ss----~s---leeia-------~~~--~~~~w~Qly~~~d~~~~~~ll~rAe~aG 180 (203)
+.+--.++.+||++.+.|.++....+ .. ++.+. +.. .-|..++| |+....+.+++|.++|
T Consensus 33 n~e~~~avi~AAee~~sPvIlq~s~~~~~~~g~~~~~~~~~~~~~~a~~a~~~VPV~lHL----DHg~~~e~i~~ai~~G 108 (321)
T PRK07084 33 NMEQLQAIIQACVETKSPVILQVSKGARKYANATLLRYMAQGAVEYAKELGCPIPIVLHL----DHGDSFELCKDCIDSG 108 (321)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEechhHHhhCCchHHHHHHHHHHHHHHHcCCCCcEEEEC----CCCCCHHHHHHHHHcC
Confidence 34555899999999999999874321 13 33332 112 12444444 7777788999999999
Q ss_pred CcEEEEee
Q 028838 181 FKALVLTA 188 (203)
Q Consensus 181 ~~AlvvTV 188 (203)
|.-+.++-
T Consensus 109 ftSVMiD~ 116 (321)
T PRK07084 109 FSSVMIDG 116 (321)
T ss_pred CCEEEeeC
Confidence 99887763
No 103
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=55.29 E-value=52 Score=27.90 Aligned_cols=24 Identities=13% Similarity=0.155 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHcCCcEEEEeecCC
Q 028838 168 IAATLVQRAERNGFKALVLTADTP 191 (203)
Q Consensus 168 ~~~~ll~rAe~aG~~AlvvTVD~p 191 (203)
...++++++.++|.+-.+.|||.+
T Consensus 206 ~~~~~v~~~~~~g~~v~~wTvn~~ 229 (256)
T cd08601 206 ADPWMVHLIHKKGLLVHPYTVNEK 229 (256)
T ss_pred cCHHHHHHHHHCCCEEEEEecCCH
Confidence 346889999999999999999864
No 104
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=55.10 E-value=45 Score=30.70 Aligned_cols=66 Identities=20% Similarity=0.225 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHhcCCeEEec---CCCCCCHHHHHhhcC--CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 028838 119 EGEVATARAAASCNTIMVLS---FTSSSSIEEVAASCN--AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 119 ~gE~a~AraA~~~gi~~~ls---s~ss~sleeia~~~~--~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
.|+.|+|+||..+|.-+..+ |-+|.=+|.+++..+ +..++|. .|.-....++-=|-.+|++|+.-|
T Consensus 7 ~GNeAiA~ga~~ag~~~~a~YPITPsTeI~e~la~~~~~~g~~~vq~---E~E~aA~~~a~GAs~aG~Ra~taT 77 (375)
T PRK09627 7 TGNELVAKAAIECGCRFFGGYPITPSSEIAHEMSVLLPKCGGTFIQM---EDEISGISVALGASMSGVKSMTAS 77 (375)
T ss_pred chHHHHHHHHHHhCCCEEEEeCCCChhHHHHHHHHHHHHcCCEEEEc---CCHHHHHHHHHHHHhhCCCEEeec
Confidence 69999999999999998887 445544555666543 4445553 566666777777888999987766
No 105
>PRK00489 hisG ATP phosphoribosyltransferase; Reviewed
Probab=55.07 E-value=46 Score=29.03 Aligned_cols=49 Identities=10% Similarity=0.171 Sum_probs=41.0
Q ss_pred CCCCCCHHHHHhhcC---C--------ceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 028838 139 FTSSSSIEEVAASCN---A--------VRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 139 s~ss~sleeia~~~~---~--------~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
......+++|.+..| + ..|+.+...-+++.+.+++.+-+++|++.|+|+
T Consensus 221 ~~~~~~~~~~~~~~p~~~~ptv~~~~~~~~~av~~~~~~~~~~~~~~~l~~~ga~~i~~~ 280 (287)
T PRK00489 221 NAPKEKLDAVIALLPGLESPTVSPLGDEGWVAVHAVVPEDLVWELMDKLKALGARGILVL 280 (287)
T ss_pred eCCHHHHHHHHHhCCCCCCCcccCCCCCCeEEEEEEECHHHHHHHHHHHHHcCCCeEEEe
Confidence 556678899887643 1 269999999999999999999999999999875
No 106
>cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI),
Probab=54.90 E-value=42 Score=29.46 Aligned_cols=21 Identities=24% Similarity=0.282 Sum_probs=19.9
Q ss_pred HHHHHHHHHcCCcEEEEeecC
Q 028838 170 ATLVQRAERNGFKALVLTADT 190 (203)
Q Consensus 170 ~~ll~rAe~aG~~AlvvTVD~ 190 (203)
.+++++|.++|.+..+.|||.
T Consensus 246 ~~~v~~a~~~Gl~v~~WTvn~ 266 (296)
T cd08559 246 TDLVKDAHKAGLLVHPYTFRN 266 (296)
T ss_pred hHHHHHHHHcCCEEEEEEecC
Confidence 689999999999999999998
No 107
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=54.63 E-value=81 Score=27.20 Aligned_cols=84 Identities=17% Similarity=0.058 Sum_probs=52.5
Q ss_pred cceEeccccchhccCchHHHHHHHHHHhcCCeEE--ecCC---CCCCHHHH-------HhhcC--CceeEEEeeeCCHHH
Q 028838 103 APIIIAPTALHKLANPEGEVATARAAASCNTIMV--LSFT---SSSSIEEV-------AASCN--AVRFYQLYVFKKRDI 168 (203)
Q Consensus 103 ~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~--lss~---ss~sleei-------a~~~~--~~~w~Qly~~~d~~~ 168 (203)
.|..+.|+.-.+-.+.++-....+-..+.|+--. .||. .+.+.+|- +++.. .+.+.++-- .+-+.
T Consensus 5 ~~~~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~-~~~~~ 83 (284)
T cd00950 5 ITALVTPFKDDGSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGS-NNTAE 83 (284)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCC-ccHHH
Confidence 3566777644444577777888888888886433 3333 23455443 22223 234444432 35677
Q ss_pred HHHHHHHHHHcCCcEEEEe
Q 028838 169 AATLVQRAERNGFKALVLT 187 (203)
Q Consensus 169 ~~~ll~rAe~aG~~AlvvT 187 (203)
+.++.+.|+++|++++++.
T Consensus 84 ~~~~a~~a~~~G~d~v~~~ 102 (284)
T cd00950 84 AIELTKRAEKAGADAALVV 102 (284)
T ss_pred HHHHHHHHHHcCCCEEEEc
Confidence 8889999999999999887
No 108
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=53.76 E-value=92 Score=26.69 Aligned_cols=84 Identities=14% Similarity=0.106 Sum_probs=50.9
Q ss_pred cceEeccccchhccCchHHHHHHHHHHhcCCeE--EecCC---CCCCHHHH-------HhhcC--CceeEEEeeeCCHHH
Q 028838 103 APIIIAPTALHKLANPEGEVATARAAASCNTIM--VLSFT---SSSSIEEV-------AASCN--AVRFYQLYVFKKRDI 168 (203)
Q Consensus 103 ~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~--~lss~---ss~sleei-------a~~~~--~~~w~Qly~~~d~~~ 168 (203)
.|..+.|+--.+-.+.++-....+-..+.|+-- +.||. .+.+.||- .++.+ .+.+.++-- .+-..
T Consensus 2 ~~a~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~-~~~~~ 80 (281)
T cd00408 2 IPALVTPFTADGEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGA-NSTRE 80 (281)
T ss_pred CCCeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCC-ccHHH
Confidence 356667765444456777778888877777643 33432 33455542 22222 233344322 24566
Q ss_pred HHHHHHHHHHcCCcEEEEe
Q 028838 169 AATLVQRAERNGFKALVLT 187 (203)
Q Consensus 169 ~~~ll~rAe~aG~~AlvvT 187 (203)
+.++.+.|+++|++++++.
T Consensus 81 ~i~~a~~a~~~Gad~v~v~ 99 (281)
T cd00408 81 AIELARHAEEAGADGVLVV 99 (281)
T ss_pred HHHHHHHHHHcCCCEEEEC
Confidence 7889999999999999984
No 109
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=53.70 E-value=87 Score=27.17 Aligned_cols=85 Identities=15% Similarity=0.046 Sum_probs=51.0
Q ss_pred cceEeccccchhccCchHHHHHHHHHHhcCCeEE--ecCC---CCCCHHHH-------HhhcCC--ceeEEEeeeCCHHH
Q 028838 103 APIIIAPTALHKLANPEGEVATARAAASCNTIMV--LSFT---SSSSIEEV-------AASCNA--VRFYQLYVFKKRDI 168 (203)
Q Consensus 103 ~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~--lss~---ss~sleei-------a~~~~~--~~w~Qly~~~d~~~ 168 (203)
.|.++.|+--.+-.+.++-..+.+-..+.|+--+ .||. .+.+.||- .+...+ +.+.++-- .+-+.
T Consensus 3 ~~a~~TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~-~s~~~ 81 (285)
T TIGR00674 3 ITALITPFKEDGSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGS-NATEE 81 (285)
T ss_pred cCceeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCC-ccHHH
Confidence 3566777644444566776777777777775433 3442 23344432 222222 34455422 24567
Q ss_pred HHHHHHHHHHcCCcEEEEee
Q 028838 169 AATLVQRAERNGFKALVLTA 188 (203)
Q Consensus 169 ~~~ll~rAe~aG~~AlvvTV 188 (203)
+.++.+.|+++|+++++++-
T Consensus 82 ~i~~a~~a~~~Gad~v~v~p 101 (285)
T TIGR00674 82 AISLTKFAEDVGADGFLVVT 101 (285)
T ss_pred HHHHHHHHHHcCCCEEEEcC
Confidence 78899999999999999874
No 110
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=53.64 E-value=32 Score=31.64 Aligned_cols=41 Identities=12% Similarity=0.102 Sum_probs=31.0
Q ss_pred ccchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHhh
Q 028838 110 TALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAAS 151 (203)
Q Consensus 110 ~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~~ 151 (203)
-+++++. .+|-..+.+++++.|++++..-+....++.+.+.
T Consensus 144 ~sf~G~g-~~gl~~L~~~~~e~Gl~~~tev~d~~~v~~~~~~ 184 (352)
T PRK13396 144 YAFQGHG-ESALELLAAAREATGLGIITEVMDAADLEKIAEV 184 (352)
T ss_pred cccCCch-HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHhh
Confidence 4555554 5666888999999999999887877777777654
No 111
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=53.62 E-value=43 Score=27.86 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=20.4
Q ss_pred HHHHHHHHHcCCcEEEEeecCC
Q 028838 170 ATLVQRAERNGFKALVLTADTP 191 (203)
Q Consensus 170 ~~ll~rAe~aG~~AlvvTVD~p 191 (203)
.++++++.++|.+..+.|||.+
T Consensus 184 ~~~v~~~~~~G~~v~~WTvn~~ 205 (226)
T cd08568 184 VELLRLLRKLGLKIVLWTVNDP 205 (226)
T ss_pred HHHHHHHHHCCCEEEEEcCCCH
Confidence 6899999999999999999976
No 112
>PLN02417 dihydrodipicolinate synthase
Probab=53.45 E-value=1.1e+02 Score=26.70 Aligned_cols=84 Identities=10% Similarity=-0.102 Sum_probs=49.8
Q ss_pred ceEeccccchhccCchHHHHHHHHHHhcCCeEE--ecC---CCCCCHHHHH-------hhcCC--ceeEEEeeeCCHHHH
Q 028838 104 PIIIAPTALHKLANPEGEVATARAAASCNTIMV--LSF---TSSSSIEEVA-------ASCNA--VRFYQLYVFKKRDIA 169 (203)
Q Consensus 104 Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~--lss---~ss~sleeia-------~~~~~--~~w~Qly~~~d~~~~ 169 (203)
|-++.|+.-.+-.+.++-..+.+-..+.|+.-+ .|| +.+.+.||-. +..++ +...++- ..+-..+
T Consensus 7 ~a~~TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~-~~~t~~~ 85 (280)
T PLN02417 7 TAIKTPYLPDGRFDLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTG-SNSTREA 85 (280)
T ss_pred eeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECC-CccHHHH
Confidence 556667644444566666777777777776543 343 2334555432 22233 2233321 2246777
Q ss_pred HHHHHHHHHcCCcEEEEee
Q 028838 170 ATLVQRAERNGFKALVLTA 188 (203)
Q Consensus 170 ~~ll~rAe~aG~~AlvvTV 188 (203)
.++.+.|+++|++++++.-
T Consensus 86 i~~a~~a~~~Gadav~~~~ 104 (280)
T PLN02417 86 IHATEQGFAVGMHAALHIN 104 (280)
T ss_pred HHHHHHHHHcCCCEEEEcC
Confidence 8899999999999998863
No 113
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=52.96 E-value=45 Score=29.26 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=29.1
Q ss_pred cchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHhh
Q 028838 111 ALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAAS 151 (203)
Q Consensus 111 g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~~ 151 (203)
+..++. .+|-..+.+.+.+.|++++..-+...+++.+.+.
T Consensus 71 s~~G~g-~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~ 110 (266)
T PRK13398 71 SFQGLG-EEGLKILKEVGDKYNLPVVTEVMDTRDVEEVADY 110 (266)
T ss_pred ccCCcH-HHHHHHHHHHHHHcCCCEEEeeCChhhHHHHHHh
Confidence 344432 4677888889999999998887777777776654
No 114
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=52.67 E-value=35 Score=29.27 Aligned_cols=126 Identities=16% Similarity=0.192 Sum_probs=65.3
Q ss_pred hhhcCCccchhhHHHHHHHhhccccccccccCCC------CCCcc-eeecCcccCcceEeccccchhccCchH-HHHHHH
Q 028838 55 DFYAGGAEDEHTLKENVEAFHRITFRPRILVDVS------RIDLS-TTILDYKISAPIIIAPTALHKLANPEG-EVATAR 126 (203)
Q Consensus 55 ~Y~~gGa~de~T~~~N~~af~~i~L~pRvL~dv~------~~dts-t~l~G~~~s~Pi~iaP~g~~~l~hp~g-E~a~Ar 126 (203)
.-++||.+.-.++..=...|+=+.|.. ++.+-. .++.+ +..-...+..|+..-++.+. .+. ...+.+
T Consensus 5 vl~SGGKDS~lAl~~~~~~~~V~~L~~-~~~~~~~s~~~h~~~~~~~~~qA~algiPl~~~~~~~~----~e~~~~~l~~ 79 (222)
T TIGR00289 5 VLYSGGKDSILALYKALEEHEVISLVG-VFSENEESYMFHSPNLHLTDLVAEAVGIPLIKLYTSGE----EEKEVEDLAG 79 (222)
T ss_pred EEecCcHHHHHHHHHHHHcCeeEEEEE-EcCCCCCccccccCCHHHHHHHHHHcCCCeEEEEcCCc----hhHHHHHHHH
Confidence 346888888888765444343222221 111110 01110 11223344556554444321 233 356667
Q ss_pred HHHhcCCeEEec-CCCC----CCHHHHHhhcC----CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCCCCC
Q 028838 127 AAASCNTIMVLS-FTSS----SSIEEVAASCN----AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLG 194 (203)
Q Consensus 127 aA~~~gi~~~ls-s~ss----~sleeia~~~~----~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p~~g 194 (203)
..++.|+-.+++ ...+ .-+|.+++..+ .|.| ..|++...+ -.+.|++|+++.||+..++
T Consensus 80 ~l~~~gv~~vv~GdI~s~~qr~~~e~vc~~~gl~~~~PLW-----~~d~~~l~e----~i~~Gf~aiIv~v~~~gL~ 147 (222)
T TIGR00289 80 QLGELDVEALCIGAIESNYQKSRIDKVCRELGLKSIAPLW-----HADPEKLMY----EVAEKFEVIIVSVSAMGLD 147 (222)
T ss_pred HHHHcCCCEEEECccccHHHHHHHHHHHHHcCCEEecccc-----CCCHHHHHH----HHHcCCeEEEEEEccCCCC
Confidence 777778665553 2332 23456666654 3444 346644333 3479999999999987665
No 115
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=52.67 E-value=15 Score=32.61 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.2
Q ss_pred HHcCCcEEEEeecCCCCCCchhh
Q 028838 177 ERNGFKALVLTADTPRLGRREAD 199 (203)
Q Consensus 177 e~aG~~AlvvTVD~p~~g~Re~d 199 (203)
+++|=.++.||||+|+..+|+..
T Consensus 39 ~~lG~~v~AvTv~sP~~p~~e~e 61 (269)
T COG1606 39 EALGDNVVAVTVDSPYIPRREIE 61 (269)
T ss_pred HHhccceEEEEEecCCCChhhhh
Confidence 56899999999999999988754
No 116
>PRK12855 hypothetical protein; Provisional
Probab=52.46 E-value=18 Score=27.52 Aligned_cols=28 Identities=14% Similarity=0.131 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHcCCcEEE-EeecCCCC
Q 028838 166 RDIAATLVQRAERNGFKALV-LTADTPRL 193 (203)
Q Consensus 166 ~~~~~~ll~rAe~aG~~Alv-vTVD~p~~ 193 (203)
++.+++|+++|++.|+.||+ |.+|+-..
T Consensus 59 ~~A~~rm~~~A~~lGAnAVVgvr~d~~~i 87 (103)
T PRK12855 59 DIAMEEMKTLARQKNANAIVGIDVDYEVV 87 (103)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEhhHh
Confidence 56678899999999999975 66666543
No 117
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=52.20 E-value=1.1e+02 Score=24.04 Aligned_cols=71 Identities=10% Similarity=-0.013 Sum_probs=42.1
Q ss_pred CchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHhhcCC---ceeEEEeeeC---CHHHHHHHHHHHHHcCCcEEEEeec
Q 028838 117 NPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNA---VRFYQLYVFK---KRDIAATLVQRAERNGFKALVLTAD 189 (203)
Q Consensus 117 hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~~~~~---~~w~Qly~~~---d~~~~~~ll~rAe~aG~~AlvvTVD 189 (203)
..+.-..+++.+.+.|+.-++-.. .-++.+.+..++ +...++-... ..+.+.+++++|+++|++++.++..
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g--~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~ 87 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP--GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVIN 87 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH--HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEecc
Confidence 344556777777777775544333 334555554432 2233332221 1466778888999999999888754
No 118
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=51.56 E-value=1.2e+02 Score=27.17 Aligned_cols=81 Identities=16% Similarity=0.148 Sum_probs=45.8
Q ss_pred CcceEeccccchhccCchHHHHHHHHHHhcCCeEE---ecCCCCC------C----HHHH----HhhcCCceeEEEeeeC
Q 028838 102 SAPIIIAPTALHKLANPEGEVATARAAASCNTIMV---LSFTSSS------S----IEEV----AASCNAVRFYQLYVFK 164 (203)
Q Consensus 102 s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~---lss~ss~------s----leei----a~~~~~~~w~Qly~~~ 164 (203)
..|++++=.| . .++.-...++.++++|.-++ +|..... . +.++ .++..-|.|.=| ..
T Consensus 99 ~~pvi~si~g-~---~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl--~p 172 (325)
T cd04739 99 SIPVIASLNG-V---SAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKL--SP 172 (325)
T ss_pred CCeEEEEeCC-C---CHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEc--CC
Confidence 4687776323 1 24445677888887775443 3321111 1 1233 322234544433 33
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEee
Q 028838 165 KRDIAATLVQRAERNGFKALVLTA 188 (203)
Q Consensus 165 d~~~~~~ll~rAe~aG~~AlvvTV 188 (203)
+-+.+.++++.++++|+++|+++=
T Consensus 173 ~~~~~~~~a~~l~~~Gadgi~~~n 196 (325)
T cd04739 173 FFSALAHMAKQLDAAGADGLVLFN 196 (325)
T ss_pred CccCHHHHHHHHHHcCCCeEEEEc
Confidence 444677899999999999998853
No 119
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=51.05 E-value=70 Score=28.36 Aligned_cols=85 Identities=14% Similarity=0.167 Sum_probs=56.8
Q ss_pred cccCcceEeccccchhcc----CchHH--HHHHHHHHhcCCeEEecCCCC--CCHHHHHhhcCCceeEEEee-----eCC
Q 028838 99 YKISAPIIIAPTALHKLA----NPEGE--VATARAAASCNTIMVLSFTSS--SSIEEVAASCNAVRFYQLYV-----FKK 165 (203)
Q Consensus 99 ~~~s~Pi~iaP~g~~~l~----hp~gE--~a~AraA~~~gi~~~lss~ss--~sleeia~~~~~~~w~Qly~-----~~d 165 (203)
+++-+|+++=+.....-. |-+.+ .-.+|.|++.|.=++=-.+.. .+++++.+.++.+ +.. -.+
T Consensus 140 ~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg~~e~F~~vv~~~~vp----VviaGG~k~~~ 215 (265)
T COG1830 140 HELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTGDPESFRRVVAACGVP----VVIAGGPKTET 215 (265)
T ss_pred HHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCCChHHHHHHHHhCCCC----EEEeCCCCCCC
Confidence 577788887554333222 33433 456889999888777665544 7888888887632 122 124
Q ss_pred HHHHHHHHHHHHHcCCcEEEEe
Q 028838 166 RDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 166 ~~~~~~ll~rAe~aG~~AlvvT 187 (203)
....+++++.|.++|+..+++.
T Consensus 216 ~~~~l~~~~~ai~aGa~G~~~G 237 (265)
T COG1830 216 EREFLEMVTAAIEAGAMGVAVG 237 (265)
T ss_pred hHHHHHHHHHHHHccCcchhhh
Confidence 6677889999999999887654
No 120
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=51.04 E-value=1e+02 Score=27.04 Aligned_cols=85 Identities=15% Similarity=0.014 Sum_probs=53.4
Q ss_pred cceEeccccchhccCchHHHHHHHHHHhcCCeE--EecC---CCCCCHHHHHh-------hcCC--ceeEEEeeeCCHHH
Q 028838 103 APIIIAPTALHKLANPEGEVATARAAASCNTIM--VLSF---TSSSSIEEVAA-------SCNA--VRFYQLYVFKKRDI 168 (203)
Q Consensus 103 ~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~--~lss---~ss~sleeia~-------~~~~--~~w~Qly~~~d~~~ 168 (203)
.|.++.|+--.+-.+.++-..+.+-..+.|+-- +.|| +.+.|.||-.+ ...+ +.+.++-- .+-..
T Consensus 5 ~~a~~TPf~~dg~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~-~~t~~ 83 (294)
T TIGR02313 5 IAPLITPFKRNGDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGA-LNHDE 83 (294)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCc-chHHH
Confidence 477788875444456677777777777777643 3344 33446655322 2232 33333322 34667
Q ss_pred HHHHHHHHHHcCCcEEEEee
Q 028838 169 AATLVQRAERNGFKALVLTA 188 (203)
Q Consensus 169 ~~~ll~rAe~aG~~AlvvTV 188 (203)
+.++.+.|+++|++++++.-
T Consensus 84 ai~~a~~A~~~Gad~v~v~p 103 (294)
T TIGR02313 84 TLELTKFAEEAGADAAMVIV 103 (294)
T ss_pred HHHHHHHHHHcCCCEEEEcC
Confidence 78899999999999998875
No 121
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=50.76 E-value=1.4e+02 Score=27.43 Aligned_cols=92 Identities=18% Similarity=0.186 Sum_probs=53.7
Q ss_pred ecCcccCcceEeccccch-hccCchHHHHHHHHHHhcCCeEE-----ecCCCCCCHHHHHhh-------c----CCceeE
Q 028838 96 ILDYKISAPIIIAPTALH-KLANPEGEVATARAAASCNTIMV-----LSFTSSSSIEEVAAS-------C----NAVRFY 158 (203)
Q Consensus 96 l~G~~~s~Pi~iaP~g~~-~l~hp~gE~a~AraA~~~gi~~~-----lss~ss~sleeia~~-------~----~~~~w~ 158 (203)
++|. ..-|++.+|+--. ++ .++.-..+++...+.|+-.+ ++.+...+.||-.+. + +....+
T Consensus 124 ~~gv-~~rPli~Ti~kp~~gl-d~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y 201 (367)
T cd08205 124 LLGV-HDRPLLGTIIKPSIGL-SPEELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLY 201 (367)
T ss_pred HhCC-CCCCeeeeeeCCCCCC-CHHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceE
Confidence 4443 3568888775322 33 45555667777777786554 334555666653221 1 233333
Q ss_pred EEeeeCCHHHHHHHHHHHHHcCCcEEEEeec
Q 028838 159 QLYVFKKRDIAATLVQRAERNGFKALVLTAD 189 (203)
Q Consensus 159 Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD 189 (203)
-.-.-.+.+.+.++.+.|+++|+++++|..-
T Consensus 202 ~~nit~~~~e~i~~a~~a~~~Gad~vmv~~~ 232 (367)
T cd08205 202 APNITGDPDELRRRADRAVEAGANALLINPN 232 (367)
T ss_pred EEEcCCCHHHHHHHHHHHHHcCCCEEEEecc
Confidence 2223345577777788888899998777654
No 122
>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=50.43 E-value=8.5 Score=35.27 Aligned_cols=46 Identities=30% Similarity=0.319 Sum_probs=34.3
Q ss_pred cchhhHHHHHHHhhccccccccccCCCCCCcceeecCcccCcceEecc
Q 028838 62 EDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAP 109 (203)
Q Consensus 62 ~de~T~~~N~~af~~i~L~pRvL~dv~~~dtst~l~G~~~s~Pi~iaP 109 (203)
+-|.+.|--..| ..|.|.||-=.. .+..+.+++||++++-||++|.
T Consensus 56 d~E~sHrlAv~a-as~gl~Pr~~~~-d~~~L~~k~~g~~f~NPiglAA 101 (398)
T KOG1436|consen 56 DPEFSHRLAVLA-ASWGLLPRDRVA-DDASLETKVLGRKFSNPIGLAA 101 (398)
T ss_pred CHHHHHHHHHHH-HHhCCCchhccC-CccchhhHHhhhhccCchhhhh
Confidence 346666666654 779999986443 2356888899999999999975
No 123
>PF01906 YbjQ_1: Putative heavy-metal-binding; InterPro: IPR002765 This family of bacterial proteins have not been characterised.; PDB: 3QKB_A 1VR4_D 1Y2I_D 2GTC_C.
Probab=50.27 E-value=20 Score=26.80 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHcCCcEEE-EeecCCC
Q 028838 166 RDIAATLVQRAERNGFKALV-LTADTPR 192 (203)
Q Consensus 166 ~~~~~~ll~rAe~aG~~Alv-vTVD~p~ 192 (203)
++..++|.++|++.|+.||+ +.+|...
T Consensus 59 ~~A~~~L~~~A~~~GAnAVIgv~~~~~~ 86 (105)
T PF01906_consen 59 EEALERLKEEAKELGANAVIGVRFDYSS 86 (105)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhhCCCCEEEEEEEEeee
Confidence 56778999999999999875 5555433
No 124
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=50.20 E-value=64 Score=28.72 Aligned_cols=64 Identities=11% Similarity=0.064 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHhcCCeEEecCCCC----CC-HHH-------HHhhcC--CceeEEEeeeCCHHHHHHHHHHHHHcCCcEE
Q 028838 119 EGEVATARAAASCNTIMVLSFTSS----SS-IEE-------VAASCN--AVRFYQLYVFKKRDIAATLVQRAERNGFKAL 184 (203)
Q Consensus 119 ~gE~a~AraA~~~gi~~~lss~ss----~s-lee-------ia~~~~--~~~w~Qly~~~d~~~~~~ll~rAe~aG~~Al 184 (203)
+--.++.+||++.+.|.++..... .+ ++. +++... -|..+. -|+. ..+.+++|.++|++-|
T Consensus 29 e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~~~~~~~~~~~~a~~~~~~vPV~lH----LDH~-~~~~i~~ai~~GftSV 103 (293)
T PRK07315 29 EWTQAILRAAEAKKAPVLIQTSMGAAKYMGGYKVCKNLIENLVESMGITVPVAIH----LDHG-HYEDALECIEVGYTSI 103 (293)
T ss_pred HHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCcEEEE----CCCC-CHHHHHHHHHcCCCEE
Confidence 444667777777777777653221 12 332 222221 132222 2666 5566777777777665
Q ss_pred EEe
Q 028838 185 VLT 187 (203)
Q Consensus 185 vvT 187 (203)
.++
T Consensus 104 m~d 106 (293)
T PRK07315 104 MFD 106 (293)
T ss_pred EEc
Confidence 543
No 125
>PRK02877 hypothetical protein; Provisional
Probab=50.08 E-value=20 Score=27.29 Aligned_cols=29 Identities=24% Similarity=0.248 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHcCCcEEE-EeecCCCCC
Q 028838 166 RDIAATLVQRAERNGFKALV-LTADTPRLG 194 (203)
Q Consensus 166 ~~~~~~ll~rAe~aG~~Alv-vTVD~p~~g 194 (203)
++.+.+|.++|++.|+.||+ |.+|....|
T Consensus 59 ~~A~~rm~~~A~~lGAnAVIgvr~d~~~i~ 88 (106)
T PRK02877 59 EIAFEELGEQARALGADAVVGIDIDYETVG 88 (106)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEehhcc
Confidence 56778899999999999975 677876654
No 126
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=49.11 E-value=66 Score=29.85 Aligned_cols=67 Identities=15% Similarity=0.111 Sum_probs=47.8
Q ss_pred chHHHHHHHHHHhcCCeEEec---CCCCCCHHHHHhhcC-C---ceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 028838 118 PEGEVATARAAASCNTIMVLS---FTSSSSIEEVAASCN-A---VRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 118 p~gE~a~AraA~~~gi~~~ls---s~ss~sleeia~~~~-~---~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
-.|+.|+|+||..+|+-+..+ |-+|.=+|.+++..+ + -.|+| ..|.-.....+-=|-.+|+++...|
T Consensus 13 ~~GNeAiA~ga~~Ag~~~~a~YPITPsTeI~e~la~~~~~g~~~~~~vq---~E~E~~A~~~~~GAs~aGaRa~TaT 86 (407)
T PRK09622 13 WDGNTAASNALRQAQIDVVAAYPITPSTPIVQNYGSFKANGYVDGEFVM---VESEHAAMSACVGAAAAGGRVATAT 86 (407)
T ss_pred cchHHHHHHHHHHhCCCEEEEECCCCccHHHHHHHHHhhCCCcCcEEEe---eccHHHHHHHHHHHHhhCcCEEeec
Confidence 369999999999999998877 445444455655443 2 24555 4577777788888888999886554
No 127
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=48.91 E-value=50 Score=30.33 Aligned_cols=67 Identities=22% Similarity=0.162 Sum_probs=45.3
Q ss_pred chHHHHHHHHHHhcCCeEEec---CCCCCCHHHHHhhcC--CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 028838 118 PEGEVATARAAASCNTIMVLS---FTSSSSIEEVAASCN--AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 118 p~gE~a~AraA~~~gi~~~ls---s~ss~sleeia~~~~--~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
-.|+.|+|+||..+|+-+..+ |-+|.=+|.+++..+ +..++| ..|.-....+.-=|-.+|++++.-|
T Consensus 7 ~~GNeAiA~ga~~ag~~~~a~YPITPsTei~e~la~~~~~~~~~~vq---~E~E~aA~~~a~GAs~aG~Ra~TaT 78 (376)
T PRK08659 7 LQGNEACAEGAIAAGCRFFAGYPITPSTEIAEVMARELPKVGGVFIQ---MEDEIASMAAVIGASWAGAKAMTAT 78 (376)
T ss_pred eehHHHHHHHHHHhCCCEEEEcCCCChHHHHHHHHHhhhhhCCEEEE---eCchHHHHHHHHhHHhhCCCeEeec
Confidence 379999999999999998876 344433455555443 234444 3466666777777778888876554
No 128
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=48.42 E-value=48 Score=29.27 Aligned_cols=13 Identities=23% Similarity=0.373 Sum_probs=6.1
Q ss_pred HHHHHHHHHHcCC
Q 028838 169 AATLVQRAERNGF 181 (203)
Q Consensus 169 ~~~ll~rAe~aG~ 181 (203)
++++++.|.+.|+
T Consensus 117 t~~v~~~a~~~gv 129 (282)
T TIGR01859 117 TKKVVEIAHAKGV 129 (282)
T ss_pred HHHHHHHHHHcCC
Confidence 4444444444443
No 129
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=47.21 E-value=1.3e+02 Score=27.08 Aligned_cols=83 Identities=12% Similarity=0.069 Sum_probs=52.0
Q ss_pred ceEeccccchhccCchHHHHHHHHHHhcCC-eEEecCC-CC-----CCHHHHHhhcC--CceeEEEeeeCCHHHHHHHHH
Q 028838 104 PIIIAPTALHKLANPEGEVATARAAASCNT-IMVLSFT-SS-----SSIEEVAASCN--AVRFYQLYVFKKRDIAATLVQ 174 (203)
Q Consensus 104 Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi-~~~lss~-ss-----~sleeia~~~~--~~~w~Qly~~~d~~~~~~ll~ 174 (203)
||++|||.+.. +...-+.+...|. ....+-+ +. ....+.....+ .+..+||. -.|.+...+..+
T Consensus 2 ~~~lAPM~g~T------d~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~~~l~~~~~e~p~~vQl~-g~~p~~~~~aA~ 74 (318)
T TIGR00742 2 RFSVAPMLDWT------DRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKKDILKFSPEESPVALQLG-GSDPNDLAKCAK 74 (318)
T ss_pred CEEEECCCCCc------CHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHHHHcccCCCCCcEEEEEc-cCCHHHHHHHHH
Confidence 78999985432 2334445566665 3443322 11 11223333222 57788985 456888888999
Q ss_pred HHHHcCCcEEEEeecCCCC
Q 028838 175 RAERNGFKALVLTADTPRL 193 (203)
Q Consensus 175 rAe~aG~~AlvvTVD~p~~ 193 (203)
++++.|++.|=|..-+|..
T Consensus 75 ~~~~~g~d~IDlN~GCP~~ 93 (318)
T TIGR00742 75 IAEKRGYDEINLNVGCPSD 93 (318)
T ss_pred HHHhCCCCEEEEECCCCHH
Confidence 9999999998888877764
No 130
>PRK12856 hypothetical protein; Provisional
Probab=47.18 E-value=24 Score=26.80 Aligned_cols=28 Identities=18% Similarity=0.219 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHcCCcEEE-EeecCCCC
Q 028838 166 RDIAATLVQRAERNGFKALV-LTADTPRL 193 (203)
Q Consensus 166 ~~~~~~ll~rAe~aG~~Alv-vTVD~p~~ 193 (203)
++.+++|.++|++.|+.||+ +.+|+...
T Consensus 59 ~~A~~rm~~~A~~lGAnAVvgvr~d~~~~ 87 (103)
T PRK12856 59 DIAMDEMKELAKQKGANAIVGVDVDYEVV 87 (103)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEhhHh
Confidence 56678899999999999875 67776544
No 131
>PF01068 DNA_ligase_A_M: ATP dependent DNA ligase domain; InterPro: IPR012310 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase, one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC), the latter being restricted to eubacteria. Eukaryotic, archaebacterial, viral and some eubacterial DNA ligases are ATP-dependent. The first step in the ligation reaction is the formation of a covalent enzyme-AMP complex. The co-factor ATP is cleaved to pyrophosphate and AMP, with the AMP being covalently joined to a highly conserved lysine residue in the active site of the ligase. The activated AMP residue is then transferred to the 5'phosphate of the nick, before the nick is sealed by phosphodiester-bond formation and AMP elimination [,]. Vertebrate cells encode three well-characterised DNA ligases (DNA ligases I, III and IV), all of which are related in structure and sequence. With the exception of the atypically small PBCV-1 viral enzyme, two regions of primary sequence are common to all members of the family. The catalytic region comprises six conserved sequence motifs (I, III, IIIa, IV, V-VI), motif I includes the lysine residue that is adenylated in the first step of the ligation reaction. The function of the second, less well-conserved region is unknown. When folded, each protein comprises of two distinct sub-domains: a large amino-terminal sub-domain ('domain 1') and a smaller carboxy-terminal sub-domain ('domain 2'). The ATP-binding site of the enzyme lies in the cleft between the two sub-domains. Domain 1 consists of two antiparallel beta sheets flanked by alpha helices, whereas domain 2 consists of a five-stranded beta barrel and a single alpha helix, which form the oligonucleotide-binding fold [, ]. This domain belongs to a more diverse superfamily, including catalytic domain of the mRNA capping enzyme (IPR001339 from INTERPRO) and NAD-dependent DNA ligase (IPR001679 from INTERPRO) []. ; GO: 0003910 DNA ligase (ATP) activity, 0005524 ATP binding, 0006281 DNA repair, 0006310 DNA recombination; PDB: 3RR5_A 1X9N_A 2CFM_A 3QWU_B 3GDE_A 2Q2U_C 2Q2T_A 1FVI_A 1P8L_A 2VUG_A ....
Probab=46.62 E-value=63 Score=26.01 Aligned_cols=43 Identities=33% Similarity=0.596 Sum_probs=35.1
Q ss_pred CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEE-eecCCCC-CCc
Q 028838 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVL-TADTPRL-GRR 196 (203)
Q Consensus 154 ~~~w~Qly~~~d~~~~~~ll~rAe~aG~~Alvv-TVD~p~~-g~R 196 (203)
.+...+.+...+.+...++.+++.+.|...||+ ..|+++. |+|
T Consensus 150 ~i~~~~~~~~~~~~~~~~~~~~~~~~g~EG~v~K~~~~~Y~~Gkr 194 (202)
T PF01068_consen 150 RIRIVESYVVNSKEELEELFEEAIDQGFEGLVLKDPDSPYEPGKR 194 (202)
T ss_dssp SEEEEEEEEESSHHHHHHHHHHHHHTTSSEEEEEETTSSC-TTEE
T ss_pred ceeEeeeecCCCHHHHHHHHHHHHHcCCceEEEECCCCccCCCCc
Confidence 345556667788999999999999999999999 7899987 566
No 132
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=46.30 E-value=1.3e+02 Score=26.15 Aligned_cols=85 Identities=16% Similarity=0.048 Sum_probs=54.9
Q ss_pred cceEeccccchhccCchHHHHHHHHHHh-cCCe--EEecCC---CCCCHHHHH-------hhcCC--ceeEEEeeeCCHH
Q 028838 103 APIIIAPTALHKLANPEGEVATARAAAS-CNTI--MVLSFT---SSSSIEEVA-------ASCNA--VRFYQLYVFKKRD 167 (203)
Q Consensus 103 ~Pi~iaP~g~~~l~hp~gE~a~AraA~~-~gi~--~~lss~---ss~sleeia-------~~~~~--~~w~Qly~~~d~~ 167 (203)
+|.++.|+--.+-.+.++-..+.+-..+ .|+- ++.||. .+.|.||-. ++.++ +...++- ..+-+
T Consensus 8 ~~a~~TPf~~dg~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg-~~~t~ 86 (293)
T PRK04147 8 YAALLTPFDEDGQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVG-SVNTA 86 (293)
T ss_pred eeeeECcCCCCCCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCC-CCCHH
Confidence 4677778755555677777888888877 7763 344442 344555532 22232 3344442 23567
Q ss_pred HHHHHHHHHHHcCCcEEEEee
Q 028838 168 IAATLVQRAERNGFKALVLTA 188 (203)
Q Consensus 168 ~~~~ll~rAe~aG~~AlvvTV 188 (203)
.+.++.+.|+++|++++++.-
T Consensus 87 ~ai~~a~~a~~~Gad~v~v~~ 107 (293)
T PRK04147 87 EAQELAKYATELGYDAISAVT 107 (293)
T ss_pred HHHHHHHHHHHcCCCEEEEeC
Confidence 788899999999999999873
No 133
>COG0393 Uncharacterized conserved protein [Function unknown]
Probab=46.27 E-value=25 Score=27.10 Aligned_cols=29 Identities=28% Similarity=0.406 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHcCCcEEE-EeecCCCCC
Q 028838 166 RDIAATLVQRAERNGFKALV-LTADTPRLG 194 (203)
Q Consensus 166 ~~~~~~ll~rAe~aG~~Alv-vTVD~p~~g 194 (203)
++.+.+|.++|++.|+.||+ |-+|+-..|
T Consensus 59 ~~Al~rm~~~A~~lGAnAVVgvr~d~~~ig 88 (108)
T COG0393 59 EEALERMVDEAEALGANAVVGVRFDYSTIG 88 (108)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEechhHhC
Confidence 45678899999999999865 777776655
No 134
>PRK01119 hypothetical protein; Provisional
Probab=46.00 E-value=26 Score=26.72 Aligned_cols=29 Identities=28% Similarity=0.391 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHcCCcEEE-EeecCCCCC
Q 028838 166 RDIAATLVQRAERNGFKALV-LTADTPRLG 194 (203)
Q Consensus 166 ~~~~~~ll~rAe~aG~~Alv-vTVD~p~~g 194 (203)
++.+.+|.++|++.|+.||+ |.+|+-..|
T Consensus 59 ~~A~~rm~~~A~~lGAnAVIgvr~d~~~ig 88 (106)
T PRK01119 59 EEAIREMEQRAKDIGANAVIGVDIDYEVLG 88 (106)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEeeeec
Confidence 56678899999999999986 777776553
No 135
>PLN02858 fructose-bisphosphate aldolase
Probab=45.94 E-value=46 Score=35.90 Aligned_cols=62 Identities=15% Similarity=0.136 Sum_probs=40.0
Q ss_pred HHHHHHHHhcCCeEEecCCCC----CCHH------HHHhhcCCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 028838 122 VATARAAASCNTIMVLSFTSS----SSIE------EVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 122 ~a~AraA~~~gi~~~lss~ss----~sle------eia~~~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
.++.+||++.+.|.++..... .+++ ..++...-|-.+. -|+....+.+++|.++||.-|+++
T Consensus 1128 ~avi~aAe~~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~lH----LDHg~~~~~i~~ai~~Gf~SVM~D 1199 (1378)
T PLN02858 1128 EAVVAAAEAEKSPAILQVHPGALKQGGIPLVSCCIAAAEQASVPITVH----FDHGTSKHELLEALELGFDSVMVD 1199 (1378)
T ss_pred HHHHHHHHHhCCCEEEECCccHHhhcCHHHHHHHHHHHHHCCCCEEEE----CCCCCCHHHHHHHHHhCCCEEEEe
Confidence 688888888888888864321 1233 1222223343333 377777788888888998887765
No 136
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=45.54 E-value=95 Score=29.00 Aligned_cols=86 Identities=20% Similarity=0.217 Sum_probs=52.3
Q ss_pred cCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHhhc---CCceeEEEeeeCCHHHHHHHHHHHH
Q 028838 101 ISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASC---NAVRFYQLYVFKKRDIAATLVQRAE 177 (203)
Q Consensus 101 ~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~~~---~~~~w~Qly~~~d~~~~~~ll~rAe 177 (203)
...|+++.-. .|+--.+.+++|+..+-...-.+.. -.+++++.+ +.+. -+.-+.|-+..++|.....
T Consensus 97 ~~~PLIL~~~------D~evl~aale~~~~~kpLL~aAt~e--Nyk~m~~lA~~y~~pl--~v~sp~Dln~lk~Ln~~l~ 166 (386)
T PF03599_consen 97 VDVPLILCGC------DPEVLKAALEACAGKKPLLYAATEE--NYKAMAALAKEYGHPL--IVSSPIDLNLLKQLNIKLT 166 (386)
T ss_dssp -SSEEEEESS------HHHHHHHHHHHTTTS--EEEEEBTT--THHHHHHHHHHCT-EE--EEE-SSCHHHHHHHHHHHH
T ss_pred cCCCEEEEeC------CHHHHHHHHHHhCcCCcEEeEcCHH--HHHHHHHHHHHcCCeE--EEEecccHHHHHHHHHHHH
Confidence 4578888532 3344456666666666555554554 467777655 3332 2233579999999999999
Q ss_pred HcCCcEEEEeecCCCCCCc
Q 028838 178 RNGFKALVLTADTPRLGRR 196 (203)
Q Consensus 178 ~aG~~AlvvTVD~p~~g~R 196 (203)
++|++-||++.=+..+|.-
T Consensus 167 ~~Gv~dIVlDpgt~~lGyG 185 (386)
T PF03599_consen 167 ELGVKDIVLDPGTRALGYG 185 (386)
T ss_dssp TTT-GGEEEE---SSTTTT
T ss_pred hcCcccEEecCCcccchhH
Confidence 9999999999877766653
No 137
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=45.23 E-value=95 Score=20.99 Aligned_cols=35 Identities=11% Similarity=0.094 Sum_probs=26.3
Q ss_pred CCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 028838 153 NAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 153 ~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
++...+=+-..+....+.++++.|++.|++.|++|
T Consensus 47 ~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 47 KGDVVIALSYSGRTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHcCCeEEEEe
Confidence 34444445555556778889999999999999998
No 138
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=45.16 E-value=1.7e+02 Score=26.73 Aligned_cols=30 Identities=20% Similarity=0.180 Sum_probs=18.1
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHhCChhhhhhhcCC
Q 028838 25 HVCRFQMAAEPVNLNEFQELARLALPKMYYDFYAGG 60 (203)
Q Consensus 25 ~~~~~~~~~~~~~~~d~~~~Ar~~Lp~~~~~Y~~gG 60 (203)
|.|.++ ++.++-.+.|+. |.+.-++++..|
T Consensus 17 Q~~~~~-----~s~e~k~~ia~~-L~~~GV~~IE~G 46 (378)
T PRK11858 17 QTPGVV-----FTNEEKLAIARM-LDEIGVDQIEAG 46 (378)
T ss_pred cCCCCC-----CCHHHHHHHHHH-HHHhCCCEEEEe
Confidence 445544 777777777765 444445666554
No 139
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=45.10 E-value=68 Score=27.94 Aligned_cols=70 Identities=16% Similarity=0.048 Sum_probs=42.8
Q ss_pred chHHHHHHHHHHhcCCeEEecCCCCCCHHHHHhhcC----------------------CceeEEEeeeCCHHHHHHHHHH
Q 028838 118 PEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCN----------------------AVRFYQLYVFKKRDIAATLVQR 175 (203)
Q Consensus 118 p~gE~a~AraA~~~gi~~~lss~ss~sleeia~~~~----------------------~~~w~Qly~~~d~~~~~~ll~r 175 (203)
.+|-..+.+.|.+.|++++.+-+...+++.+.+..+ -|-.+--=...+.+.+...++.
T Consensus 75 ~~gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~~~~d~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~ 154 (260)
T TIGR01361 75 EEGLKLLRRAADEHGLPVVTEVMDPRDVEIVAEYADILQIGARNMQNFELLKEVGKQGKPVLLKRGMGNTIEEWLYAAEY 154 (260)
T ss_pred HHHHHHHHHHHHHhCCCEEEeeCChhhHHHHHhhCCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHH
Confidence 356677888888999988888777766666643311 1111110011256666677777
Q ss_pred HHHcCCcEEEEe
Q 028838 176 AERNGFKALVLT 187 (203)
Q Consensus 176 Ae~aG~~AlvvT 187 (203)
....|.+-|+++
T Consensus 155 i~~~Gn~~i~l~ 166 (260)
T TIGR01361 155 ILSSGNGNVILC 166 (260)
T ss_pred HHHcCCCcEEEE
Confidence 777888766664
No 140
>cd07896 Adenylation_kDNA_ligase_like Adenylation domain of kDNA ligases and similar proteins. The mitochondrial DNA of parasitic protozoans is highly unusual. It is termed the kinetoplast DNA (kDNA) and consists of circular DNA molecules (maxicircles) and several thousand smaller circular molecules (minicircles). This group is composed of kDNA ligase, Chlorella virus DNA ligase, and similar proteins. kDNA ligase and Chlorella virus DNA ligase are the smallest known ATP-dependent ligases. They are involved in DNA replication or repair. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. They have a highly modular architecture consisting of a unique arrangement of two or more discrete domains. The adenylation and the C-terminal oligonucleotide/oligosaccharide binding (OB)-fold domains comprise a catalytic core unit that is common to most me
Probab=44.98 E-value=96 Score=24.67 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=33.1
Q ss_pred eEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe-ecCCCCCCchh
Q 028838 157 FYQLYVFKKRDIAATLVQRAERNGFKALVLT-ADTPRLGRREA 198 (203)
Q Consensus 157 w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvT-VD~p~~g~Re~ 198 (203)
..+.+...+.+.+.++++++.+.|...||+- .|+++.+.|..
T Consensus 125 ~~~~~~~~~~~~i~~~~~~~~~~g~EGlv~K~~ds~Y~~gR~~ 167 (174)
T cd07896 125 IVPQIPVKSNEALDQYLDEVVAAGGEGLMLRRPDAPYETGRSD 167 (174)
T ss_pred EEeeeeeCCHHHHHHHHHHHHhcCCCeEEEecCCCcccCCcCC
Confidence 3344455788899999999999999999998 58888666643
No 141
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=44.70 E-value=78 Score=26.63 Aligned_cols=24 Identities=13% Similarity=0.357 Sum_probs=20.1
Q ss_pred HHHHHHHHcCCcEEEEeecCCCCC
Q 028838 171 TLVQRAERNGFKALVLTADTPRLG 194 (203)
Q Consensus 171 ~ll~rAe~aG~~AlvvTVD~p~~g 194 (203)
++++.+.+.|++++++.||+..++
T Consensus 126 el~~~~~~~G~~~~i~~v~~~~l~ 149 (218)
T TIGR03679 126 EYLRELVERGFRFIIVSVSAYGLD 149 (218)
T ss_pred HHHHHHHHCCCEEEEEEEecCCCC
Confidence 477888899999999999986554
No 142
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=44.35 E-value=1e+02 Score=28.51 Aligned_cols=66 Identities=17% Similarity=0.189 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHhcCCeEEec---CCCCCCHHHHHhhcC----CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 028838 119 EGEVATARAAASCNTIMVLS---FTSSSSIEEVAASCN----AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 119 ~gE~a~AraA~~~gi~~~ls---s~ss~sleeia~~~~----~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
+|+.|+|+||..+|.-+..+ |-+|.=+|.+++..+ +..|.|. .|.-.....+-=|-.+|+++...|
T Consensus 8 ~GNeAvA~aa~~Ag~~v~a~YPITPsTei~e~la~~~~~g~~~~~~v~~---EsE~aA~~~~~GAs~aGaRa~TaT 80 (394)
T PRK08367 8 KANEAAAWAAKLAKPKVIAAFPITPSTLVPEKISEFVANGELDAEFIKV---ESEHSAISACVGASAAGVRTFTAT 80 (394)
T ss_pred cHHHHHHHHHHHhCCCEEEEECCCCccHHHHHHHHHhhcCCcCeEEEEe---CCHHHHHHHHHHHHhhCCCeEeee
Confidence 69999999999999988776 445444455665433 3456654 667677778888888898876554
No 143
>COG2121 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.13 E-value=1.2e+02 Score=26.08 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=19.5
Q ss_pred CchHHHHHHHHHHhcCCeEEecCC
Q 028838 117 NPEGEVATARAAASCNTIMVLSFT 140 (203)
Q Consensus 117 hp~gE~a~AraA~~~gi~~~lss~ 140 (203)
|-|||+ +|+-.++.|+..+.||-
T Consensus 77 s~DGEl-iA~~l~kfG~~~IRGSs 99 (214)
T COG2121 77 SRDGEL-IARLLEKFGLRVIRGSS 99 (214)
T ss_pred CcCHHH-HHHHHHHcCceEEeccC
Confidence 678886 57888999999999886
No 144
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=43.73 E-value=56 Score=26.33 Aligned_cols=80 Identities=16% Similarity=0.299 Sum_probs=45.0
Q ss_pred cccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCC-CCCHHHHHhhcCCceeEEEeeeCCHHHHHHHHHHHH
Q 028838 99 YKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTS-SSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAE 177 (203)
Q Consensus 99 ~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~s-s~sleeia~~~~~~~w~Qly~~~d~~~~~~ll~rAe 177 (203)
+.++.|+.-=|+++. |--.++.++-...+-.-.++... ...++.+....+- . +..|...+.+.+...|+++.
T Consensus 50 ~~~~iPVV~I~~s~~-----Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~-~-i~~~~~~~~~e~~~~i~~~~ 122 (176)
T PF06506_consen 50 KHVSIPVVEIPISGF-----DILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGV-D-IKIYPYDSEEEIEAAIKQAK 122 (176)
T ss_dssp CC-SS-EEEE---HH-----HHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT--E-EEEEEESSHHHHHHHHHHHH
T ss_pred HhCCCCEEEECCCHh-----HHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCC-c-eEEEEECCHHHHHHHHHHHH
Confidence 344567776665443 34455665443332333333322 2347777776642 1 35678889999999999999
Q ss_pred HcCCcEEE
Q 028838 178 RNGFKALV 185 (203)
Q Consensus 178 ~aG~~Alv 185 (203)
+.|++.|+
T Consensus 123 ~~G~~viV 130 (176)
T PF06506_consen 123 AEGVDVIV 130 (176)
T ss_dssp HTT--EEE
T ss_pred HcCCcEEE
Confidence 99998876
No 145
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=43.05 E-value=57 Score=27.01 Aligned_cols=87 Identities=15% Similarity=0.190 Sum_probs=48.5
Q ss_pred ecCcccCcceEeccccchhccCchHH----HHHHHHHHhcCCeEE-ecCCCCC----CHHHHHhhcC----CceeEEEee
Q 028838 96 ILDYKISAPIIIAPTALHKLANPEGE----VATARAAASCNTIMV-LSFTSSS----SIEEVAASCN----AVRFYQLYV 162 (203)
Q Consensus 96 l~G~~~s~Pi~iaP~g~~~l~hp~gE----~a~AraA~~~gi~~~-lss~ss~----sleeia~~~~----~~~w~Qly~ 162 (203)
.....+..|+.+-.+... .++-. ..+-+.+++ |+..+ -|+..+. -+|.++...+ .|.|
T Consensus 52 ~~A~~lgipl~~i~~~~~---~e~~~~~l~~~l~~~~~~-g~~~vv~G~i~sd~~~~~~e~~~~~~gl~~~~PLW----- 122 (194)
T cd01994 52 LQAEAMGIPLIRIEISGE---EEDEVEDLKELLRKLKEE-GVDAVVFGAILSEYQRTRVERVCERLGLEPLAPLW----- 122 (194)
T ss_pred HHHHHcCCcEEEEeCCCC---chHHHHHHHHHHHHHHHc-CCCEEEECccccHHHHHHHHHHHHHcCCEEEeccc-----
Confidence 345566677776665321 22222 233343444 66543 3444432 3456666553 2333
Q ss_pred eCCHHHHHHHHHHHHHcCCcEEEEeecCCCCC
Q 028838 163 FKKRDIAATLVQRAERNGFKALVLTADTPRLG 194 (203)
Q Consensus 163 ~~d~~~~~~ll~rAe~aG~~AlvvTVD~p~~g 194 (203)
.+|+ +++++...+.|++++++.|++..++
T Consensus 123 ~~~~---~~ll~e~~~~g~~~~iv~v~~~~L~ 151 (194)
T cd01994 123 GRDQ---EELLREMIEAGFKAIIIKVAAEGLD 151 (194)
T ss_pred CCCH---HHHHHHHHHcCCeEEEEEeccCCCC
Confidence 2343 3467777789999999999987654
No 146
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=43.02 E-value=1.6e+02 Score=26.14 Aligned_cols=84 Identities=14% Similarity=0.149 Sum_probs=54.0
Q ss_pred cceEeccccchhccCchHHHHHHHHHHhcCCe--EEecC---CCCCCHHHHHh-------hcCC--ceeEEEeeeCCHHH
Q 028838 103 APIIIAPTALHKLANPEGEVATARAAASCNTI--MVLSF---TSSSSIEEVAA-------SCNA--VRFYQLYVFKKRDI 168 (203)
Q Consensus 103 ~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~--~~lss---~ss~sleeia~-------~~~~--~~w~Qly~~~d~~~ 168 (203)
.|.++.|+--.+-.+.++-..+++--.+.|+- +.+|| +.+.|.||-.+ +..+ +...++- ..+-+.
T Consensus 9 i~a~vTPF~~dg~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g-~~~t~e 87 (299)
T COG0329 9 IPALVTPFDEDGSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVG-SNSTAE 87 (299)
T ss_pred eeccccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecC-CCcHHH
Confidence 57778887654446777778888888888764 34444 34456665432 2222 2233322 234677
Q ss_pred HHHHHHHHHHcCCcEEEEe
Q 028838 169 AATLVQRAERNGFKALVLT 187 (203)
Q Consensus 169 ~~~ll~rAe~aG~~AlvvT 187 (203)
..++.+.|++.|+++|++.
T Consensus 88 ai~lak~a~~~Gad~il~v 106 (299)
T COG0329 88 AIELAKHAEKLGADGILVV 106 (299)
T ss_pred HHHHHHHHHhcCCCEEEEe
Confidence 7889999999999999875
No 147
>PRK01217 hypothetical protein; Provisional
Probab=41.96 E-value=32 Score=26.56 Aligned_cols=29 Identities=14% Similarity=0.323 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHcCCcEEE-EeecCCCCC
Q 028838 166 RDIAATLVQRAERNGFKALV-LTADTPRLG 194 (203)
Q Consensus 166 ~~~~~~ll~rAe~aG~~Alv-vTVD~p~~g 194 (203)
++.+.+|+++|++.|+.||+ |.+|+...|
T Consensus 66 ~eA~~rm~~~A~~lGAnAVVgvrfd~s~i~ 95 (114)
T PRK01217 66 NQALERMIDHAKELGANAVINVRFDSNEIS 95 (114)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEHHHhc
Confidence 56778899999999999875 677765544
No 148
>PRK00967 hypothetical protein; Provisional
Probab=41.86 E-value=33 Score=26.01 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHcCCcEEE-EeecCCCCC
Q 028838 166 RDIAATLVQRAERNGFKALV-LTADTPRLG 194 (203)
Q Consensus 166 ~~~~~~ll~rAe~aG~~Alv-vTVD~p~~g 194 (203)
++.+.+|.++|++.|+.||+ |.+|+...+
T Consensus 59 ~eA~~rm~~~A~~~GAnAIIgvr~d~~~~~ 88 (105)
T PRK00967 59 DIAIDRMKEEAKQKGANAIVGMRFDSSSIR 88 (105)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEeeeec
Confidence 56678899999999999976 788876553
No 149
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=41.82 E-value=1.7e+02 Score=25.17 Aligned_cols=72 Identities=15% Similarity=0.180 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhcCC--eEEecCCCCCCHHHHH---hhc-CCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCCC
Q 028838 120 GEVATARAAASCNT--IMVLSFTSSSSIEEVA---ASC-NAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPR 192 (203)
Q Consensus 120 gE~a~AraA~~~gi--~~~lss~ss~sleeia---~~~-~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p~ 192 (203)
-...+-++|++.|. ..........+-+++. ... .++--+ +..+.|.......+++|.++|...+.++.+.+.
T Consensus 51 ~~~g~~~~a~~~g~~~~~~~~~~~~d~~~Q~~~i~~~ia~~~daI-iv~~~d~~~~~~~v~~a~~aGIpVv~~d~~~~~ 128 (322)
T COG1879 51 VRKGAEAAAKKLGVVVAVVIADAQNDVAKQIAQIEDLIAQGVDAI-IINPVDPDALTPAVKKAKAAGIPVVTVDSDIPG 128 (322)
T ss_pred HHHHHHHHHHHcCCcEEEEecccccChHHHHHHHHHHHHcCCCEE-EEcCCChhhhHHHHHHHHHCCCcEEEEecCCCC
Confidence 34557777888885 3333332222222222 211 122111 455789999999999999999776666555444
No 150
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=41.76 E-value=91 Score=27.24 Aligned_cols=23 Identities=35% Similarity=0.354 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHHH---HcCCcEEEEe
Q 028838 165 KRDIAATLVQRAE---RNGFKALVLT 187 (203)
Q Consensus 165 d~~~~~~ll~rAe---~aG~~AlvvT 187 (203)
+.+..+++++||. +||+.+|++-
T Consensus 153 t~~~a~~~i~ra~a~~~AGA~~i~lE 178 (254)
T cd06557 153 TEEEAERLLEDALALEEAGAFALVLE 178 (254)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 4444567777765 5999999983
No 151
>PLN02775 Probable dihydrodipicolinate reductase
Probab=41.59 E-value=1.4e+02 Score=26.74 Aligned_cols=75 Identities=11% Similarity=0.196 Sum_probs=49.9
Q ss_pred hhhHHHHHHHhhccccccccccCCCCCCcceeecCcccCcceE--------e------ccc-cchhccCchHHHHHHHHH
Q 028838 64 EHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPII--------I------APT-ALHKLANPEGEVATARAA 128 (203)
Q Consensus 64 e~T~~~N~~af~~i~L~pRvL~dv~~~dtst~l~G~~~s~Pi~--------i------aP~-g~~~l~hp~gE~a~AraA 128 (203)
+.+..+-..+ +...|.+-+.+.-...|..+++.|. ..|+. + .|- -.--+.||+.-...++.|
T Consensus 24 G~~~~~av~~-~~~~Lv~~~~~~~~~~~~~~~~~g~--~v~~~~~~dl~~~l~~~~~~~~~~VvIDFT~P~a~~~~~~~~ 100 (286)
T PLN02775 24 GHAVAEAAVS-AGLQLVPVSFTGPAGVGVTVEVCGV--EVRLVGPSEREAVLSSVKAEYPNLIVVDYTLPDAVNDNAELY 100 (286)
T ss_pred HHHHHHHHhc-CCCEEEEEeccccccccccceeccc--eeeeecCccHHHHHHHhhccCCCEEEEECCChHHHHHHHHHH
Confidence 5556666666 8888888776544334455567775 44444 0 132 233456888888999999
Q ss_pred HhcCCeEEecCCC
Q 028838 129 ASCNTIMVLSFTS 141 (203)
Q Consensus 129 ~~~gi~~~lss~s 141 (203)
.+.|++.++||-.
T Consensus 101 ~~~g~~~VvGTTG 113 (286)
T PLN02775 101 CKNGLPFVMGTTG 113 (286)
T ss_pred HHCCCCEEEECCC
Confidence 9999999999754
No 152
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=41.28 E-value=42 Score=28.63 Aligned_cols=128 Identities=15% Similarity=0.213 Sum_probs=58.7
Q ss_pred hhhcCCccchhhHHHHHHHhhccccccccccCCCC------CCcc-eeecCcccCcceEeccccchhccCchHHHHHHHH
Q 028838 55 DFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSR------IDLS-TTILDYKISAPIIIAPTALHKLANPEGEVATARA 127 (203)
Q Consensus 55 ~Y~~gGa~de~T~~~N~~af~~i~L~pRvL~dv~~------~dts-t~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~Ara 127 (203)
.-++||.+.-.++..=...++ +...-.+.+.-.+ +..+ +..-..-+..|+...++.+. ..+-...+.++
T Consensus 5 ~l~SGGKDS~lAl~~a~~~~~-v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~g~---~~~~~~~l~~~ 80 (218)
T PF01902_consen 5 ALWSGGKDSCLALYRALRQHE-VVCLLTMVPEEEDSYMFHGVNIELIEAQAEALGIPLIEIPTSGD---EEDYVEDLKEA 80 (218)
T ss_dssp EE--SSHHHHHHHHHHHHT-E-EEEEEEEEESTTT-SSS-STTGTCHHHHHHHHT--EEEEEE------CCCHHHHHHHH
T ss_pred EEEcCcHHHHHHHHHHHHhCC-ccEEEEeccCCCCcccccccCHHHHHHHHHHCCCCEEEEEccCc---cchhhHHHHHH
Confidence 346899998888765554422 2211112211110 1111 11122345568888777533 23344677777
Q ss_pred HHhcCCeEEecC-CCC----CCHHHHHhhcC----CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCCCCC
Q 028838 128 AASCNTIMVLSF-TSS----SSIEEVAASCN----AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLG 194 (203)
Q Consensus 128 A~~~gi~~~lss-~ss----~sleeia~~~~----~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p~~g 194 (203)
.++.++-.+++- ..+ .-+|.+++..+ .|.|- .|+ +++++...+.|++++++.||+..++
T Consensus 81 l~~~~v~~vv~GdI~~~~~r~~~e~vc~~lGl~~~~PLW~-----~d~---~~ll~e~i~~Gf~aiIv~V~~~~L~ 148 (218)
T PF01902_consen 81 LKELKVEAVVFGDIDSEYQRNWVERVCERLGLEAVFPLWG-----RDR---EELLREFIESGFEAIIVKVDADGLD 148 (218)
T ss_dssp HCTC--SEEE--TTS-HHHHHHHHHHHHHCT-EEE-TTTT-------H---HHHHHHHHHTT-EEEEEEEESTT--
T ss_pred HHHcCCCEEEECcCCcHHHHHHHHHHHHHcCCEEEecccC-----CCH---HHHHHHHHHCCCeEEEEEEeccCCC
Confidence 788886655532 221 12344555443 23332 233 3566666678999999999997763
No 153
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=40.89 E-value=36 Score=29.71 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHc-CCcEEEEeecCCC
Q 028838 167 DIAATLVQRAERN-GFKALVLTADTPR 192 (203)
Q Consensus 167 ~~~~~ll~rAe~a-G~~AlvvTVD~p~ 192 (203)
-.+.++|++|.++ |.+..+.|||.+.
T Consensus 216 l~t~~~V~~~h~~~gl~V~~WTVN~~~ 242 (263)
T cd08580 216 LWTPAAVDCFRRNSKVKIVLFGINTAD 242 (263)
T ss_pred cCCHHHHHHHHhcCCcEEEEEEeCCHH
Confidence 3457899999999 9999999999764
No 154
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=40.68 E-value=37 Score=32.18 Aligned_cols=28 Identities=36% Similarity=0.354 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 028838 166 RDIAATLVQRAERNGFKALVLTADTPRL 193 (203)
Q Consensus 166 ~~~~~~ll~rAe~aG~~AlvvTVD~p~~ 193 (203)
-+...+-+++|++.|+.++++.+|||..
T Consensus 42 ~~~l~r~l~~A~~~~a~~vvl~ldTPGG 69 (436)
T COG1030 42 ADYLQRALQSAEEENAAAVVLELDTPGG 69 (436)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEecCCCc
Confidence 4566778899999999999999999974
No 155
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=40.43 E-value=2.1e+02 Score=23.48 Aligned_cols=39 Identities=18% Similarity=0.091 Sum_probs=30.7
Q ss_pred CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 028838 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRL 193 (203)
Q Consensus 154 ~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p~~ 193 (203)
.+...||.- .|.+...+..+++.++||++|=|.+-+|..
T Consensus 55 ~p~~~qi~g-~~~~~~~~aa~~~~~aG~d~ieln~g~p~~ 93 (231)
T cd02801 55 RPLIVQLGG-SDPETLAEAAKIVEELGADGIDLNMGCPSP 93 (231)
T ss_pred CCEEEEEcC-CCHHHHHHHHHHHHhcCCCEEEEeCCCCHH
Confidence 466778753 457777888999999999999999877653
No 156
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=40.24 E-value=2.2e+02 Score=24.67 Aligned_cols=83 Identities=14% Similarity=0.024 Sum_probs=47.5
Q ss_pred ceEeccccchhccCchHHHHHHHHHHhc-CCeE--EecC---CCCCCHHHHH---h----hcCC--ceeEEEeeeCCHHH
Q 028838 104 PIIIAPTALHKLANPEGEVATARAAASC-NTIM--VLSF---TSSSSIEEVA---A----SCNA--VRFYQLYVFKKRDI 168 (203)
Q Consensus 104 Pi~iaP~g~~~l~hp~gE~a~AraA~~~-gi~~--~lss---~ss~sleeia---~----~~~~--~~w~Qly~~~d~~~ 168 (203)
|..+.|+--.+-.+.++-..+++-..+. |+-- +.|| +.+.+.||-. + +..+ +...++- ..+-+.
T Consensus 6 ~a~~TPf~~dg~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~-~~~~~~ 84 (288)
T cd00954 6 AALLTPFDENGEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVG-SLNLKE 84 (288)
T ss_pred eceECCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccC-CCCHHH
Confidence 5566676444445666666777766666 6443 3333 2334555432 2 2233 2233321 235667
Q ss_pred HHHHHHHHHHcCCcEEEEe
Q 028838 169 AATLVQRAERNGFKALVLT 187 (203)
Q Consensus 169 ~~~ll~rAe~aG~~AlvvT 187 (203)
+.++.+.|+++|++++++.
T Consensus 85 ai~~a~~a~~~Gad~v~~~ 103 (288)
T cd00954 85 SQELAKHAEELGYDAISAI 103 (288)
T ss_pred HHHHHHHHHHcCCCEEEEe
Confidence 7888899999999999876
No 157
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=40.19 E-value=71 Score=27.29 Aligned_cols=26 Identities=8% Similarity=0.238 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecCCC
Q 028838 167 DIAATLVQRAERNGFKALVLTADTPR 192 (203)
Q Consensus 167 ~~~~~ll~rAe~aG~~AlvvTVD~p~ 192 (203)
..+.++++++.++|.+..+.|||.+-
T Consensus 210 ~~~~~~v~~~~~~g~~v~~WTVn~~~ 235 (252)
T cd08574 210 QLSAQEIREYSKANISVNLYVVNEPW 235 (252)
T ss_pred cCCHHHHHHHHHCCCEEEEEccCCHH
Confidence 35678999999999999999999764
No 158
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=40.16 E-value=39 Score=30.55 Aligned_cols=39 Identities=23% Similarity=0.363 Sum_probs=25.8
Q ss_pred cceeecCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEe
Q 028838 92 LSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVL 137 (203)
Q Consensus 92 tst~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~l 137 (203)
++|+++|.++..||++|. |. ..++| ..+...++|..+++
T Consensus 46 L~~~~~Gl~l~NPi~lAs-G~----~~~~~--~~~~~~~~G~Gavv 84 (335)
T TIGR01036 46 LEVTVLGLKFPNPLGLAA-GF----DKDGE--AIDALGAMGFGFLE 84 (335)
T ss_pred CcEEECCEECCCCcEeCC-cc----CCCHH--HHHHHHhcCCCEEE
Confidence 899999999999999943 32 23444 34444445655544
No 159
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=39.57 E-value=1.9e+02 Score=27.23 Aligned_cols=84 Identities=13% Similarity=0.093 Sum_probs=52.1
Q ss_pred eecCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHH-------hh-c-CCceeEEEee-eC
Q 028838 95 TILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVA-------AS-C-NAVRFYQLYV-FK 164 (203)
Q Consensus 95 ~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia-------~~-~-~~~~w~Qly~-~~ 164 (203)
++|| +..||+.+||+. +.. ...++.+..++|..=++++.. .++++|. +. . +.+.-+-|.. +.
T Consensus 8 ~~lg--iryPii~gpMa~-Gis----s~eLVaAvs~AGgLG~lgag~-l~~e~l~~~I~~ir~~lt~~~PfGVNL~~~~~ 79 (418)
T cd04742 8 EDYG--LRYAYVAGAMAR-GIA----SAELVVAMGKAGMLGFFGAGG-LPLDEVEQAIERIQAALGNGEPYGVNLIHSPD 79 (418)
T ss_pred HHhC--CCccEECCcccC-CCC----CHHHHHHHHhCCCeeeecCCC-CCHHHHHHHHHHHHHhccCCCCeEEeeecCCC
Confidence 3444 467999999972 122 346778888888877777544 3455553 22 2 2354444544 33
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE
Q 028838 165 KRDIAATLVQRAERNGFKALVL 186 (203)
Q Consensus 165 d~~~~~~ll~rAe~aG~~Alvv 186 (203)
+.+...++++...+.|++.+..
T Consensus 80 ~~~~e~~~v~l~le~gV~~ve~ 101 (418)
T cd04742 80 EPELEEGLVDLFLRHGVRVVEA 101 (418)
T ss_pred CchhHHHHHHHHHHcCCCEEEe
Confidence 4455567888888999976543
No 160
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=39.18 E-value=88 Score=28.99 Aligned_cols=65 Identities=11% Similarity=0.041 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcCCeEEecCCCCCCH----HHHHhhc--CCceeEEEeee-----C--CHHHHHHHHHHHHHcCCcEEE
Q 028838 121 EVATARAAASCNTIMVLSFTSSSSI----EEVAASC--NAVRFYQLYVF-----K--KRDIAATLVQRAERNGFKALV 185 (203)
Q Consensus 121 E~a~AraA~~~gi~~~lss~ss~sl----eeia~~~--~~~~w~Qly~~-----~--d~~~~~~ll~rAe~aG~~Alv 185 (203)
...+..-|..+|++|+-+......+ +.|.++. +|+.++++|.+ . +...+.+..+.|.+.||--|.
T Consensus 219 kkd~~~ia~a~g~~YVA~~s~~~~~~~~~~~i~eA~~~~Gps~I~v~sPC~~~G~~~~~~~~~~~~klAVetG~wpLy 296 (365)
T cd03377 219 KKDLGMIAMSYGNVYVAQIALGANDNQTLKAFREAEAYDGPSLIIAYSPCIAHGIKGGMTKSQEQQKLAVESGYWPLY 296 (365)
T ss_pred CcCHHHHHHHcCCCEEEEEecccCHHHHHHHHHHHhcCCCCEEEEEEccCcccCccCChhhHHHHHHHHHHcCCCeEE
Confidence 3667777788899999876443233 3444443 58888999885 2 667888999999999986554
No 161
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=39.09 E-value=24 Score=30.81 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=15.0
Q ss_pred cceeecCcccCcceEecc
Q 028838 92 LSTTILDYKISAPIIIAP 109 (203)
Q Consensus 92 tst~l~G~~~s~Pi~iaP 109 (203)
++|+++|.++..||++|.
T Consensus 2 L~~~~~Gl~l~nPi~~as 19 (295)
T PF01180_consen 2 LSTNFCGLTLKNPIGLAS 19 (295)
T ss_dssp G-EEETTEEESSSEEE-T
T ss_pred ccEEECCEEcCCCcEECC
Confidence 689999999999999975
No 162
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=38.70 E-value=52 Score=21.75 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=14.1
Q ss_pred eeEEEeeeCCHHHHHHHHHHHHHcCCcEE
Q 028838 156 RFYQLYVFKKRDIAATLVQRAERNGFKAL 184 (203)
Q Consensus 156 ~w~Qly~~~d~~~~~~ll~rAe~aG~~Al 184 (203)
.++|+.-.++.+...+++++....|..+.
T Consensus 5 y~vQv~s~~~~~~A~~~~~~l~~~g~~~~ 33 (76)
T PF05036_consen 5 YYVQVGSFSSEENAERLLAKLKKKGPDAY 33 (76)
T ss_dssp EEEEEEEES-HHHHHHHHHHHHHHT----
T ss_pred EEEEEEEcCCHHHHHHHHHHHHhcCCCcc
Confidence 45565555556655556665555555543
No 163
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=37.67 E-value=2.1e+02 Score=26.04 Aligned_cols=28 Identities=29% Similarity=0.366 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEeecCCC
Q 028838 164 KKRDIAATLVQRAERNGFKALVLTADTPR 192 (203)
Q Consensus 164 ~d~~~~~~ll~rAe~aG~~AlvvTVD~p~ 192 (203)
.|.+...++++++.++|++.|.+ .|+..
T Consensus 138 ~~~~~l~~~~~~~~~~g~~~i~l-~DT~G 165 (363)
T TIGR02090 138 TDIDFLIKVFKRAEEAGADRINI-ADTVG 165 (363)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEE-eCCCC
Confidence 47788888888888888886544 46543
No 164
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=37.48 E-value=1.6e+02 Score=21.39 Aligned_cols=38 Identities=11% Similarity=0.086 Sum_probs=28.5
Q ss_pred CCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecC
Q 028838 153 NAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADT 190 (203)
Q Consensus 153 ~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~ 190 (203)
++..++=+-..+....+.++++.|.+.|++.+++|-+.
T Consensus 60 ~~~~~i~iS~~g~~~~~~~~~~~a~~~g~~iv~iT~~~ 97 (139)
T cd05013 60 PGDVVIAISFSGETKETVEAAEIAKERGAKVIAITDSA 97 (139)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEcCCC
Confidence 44455545555666778889999999999999998753
No 165
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=37.30 E-value=43 Score=28.77 Aligned_cols=34 Identities=26% Similarity=0.496 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCch
Q 028838 164 KKRDIAATLVQRAERNGFKALVLTADTPRLGRRE 197 (203)
Q Consensus 164 ~d~~~~~~ll~rAe~aG~~AlvvTVD~p~~g~Re 197 (203)
-..+++.++++.|.++|++||++-.-.|-.|-|+
T Consensus 60 lHPDl~~~l~~~~~e~g~kavIvp~~~~~~g~~~ 93 (217)
T PF02593_consen 60 LHPDLTYELPEIAKEAGVKAVIVPSESPKPGLRR 93 (217)
T ss_pred cCchhHHHHHHHHHHcCCCEEEEecCCCccchHH
Confidence 3688999999999999999999999888755554
No 166
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=37.10 E-value=1.7e+02 Score=25.83 Aligned_cols=25 Identities=16% Similarity=0.044 Sum_probs=10.4
Q ss_pred HHHHHHHHhcCCeEEecCCCCCCHH
Q 028838 122 VATARAAASCNTIMVLSFTSSSSIE 146 (203)
Q Consensus 122 ~a~AraA~~~gi~~~lss~ss~sle 146 (203)
...++.|-+.|.-.+.=-.++.+.+
T Consensus 87 ~e~i~~Al~~G~tsVm~d~s~~~~~ 111 (281)
T PRK06806 87 FEKIKEALEIGFTSVMFDGSHLPLE 111 (281)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHH
Confidence 3344444444444433333333443
No 167
>PLN02245 ATP phosphoribosyl transferase
Probab=37.09 E-value=2.2e+02 Score=26.84 Aligned_cols=59 Identities=20% Similarity=0.239 Sum_probs=45.4
Q ss_pred HhcCCeEEecCCCCCCHHHHHhh-----------cCC-------------ceeEEEeeeCCHHHHHHHHHHHHHcCCcEE
Q 028838 129 ASCNTIMVLSFTSSSSIEEVAAS-----------CNA-------------VRFYQLYVFKKRDIAATLVQRAERNGFKAL 184 (203)
Q Consensus 129 ~~~gi~~~lss~ss~sleeia~~-----------~~~-------------~~w~Qly~~~d~~~~~~ll~rAe~aG~~Al 184 (203)
.+.+-.++.-+....++|+|.+. .|+ ..|+-+...-+++.+.+++++-+++|+..|
T Consensus 299 ~A~~~~~v~~Nvp~~~le~v~~~~~~~~~lPG~~~PTVspl~~~~~~~~~~~w~AV~~vV~~~~v~~~~~~Lk~~GA~~I 378 (403)
T PLN02245 299 RAEGQFTVTANMRGSSAEEVAERVLSQPSLSGLQGPTISPVYCKRDGKVAVDYYAIVICVPKKALYESVQQLRKIGGSGV 378 (403)
T ss_pred hhhcEEEEEecCChhhHHHHHHhhhccccCCCCCCCccccccccccccCCCCEEEEEEEEcHHHHHHHHHHHHHcCCCeE
Confidence 33455566667778889988776 221 158888888889999999999999999998
Q ss_pred EEe
Q 028838 185 VLT 187 (203)
Q Consensus 185 vvT 187 (203)
.|+
T Consensus 379 lV~ 381 (403)
T PLN02245 379 LVS 381 (403)
T ss_pred EEE
Confidence 876
No 168
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=36.70 E-value=1.1e+02 Score=29.73 Aligned_cols=66 Identities=18% Similarity=0.201 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHhcCCeEEecCCCCCCH----HHHHhhcC--CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEee
Q 028838 119 EGEVATARAAASCNTIMVLSFTSSSSI----EEVAASCN--AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTA 188 (203)
Q Consensus 119 ~gE~a~AraA~~~gi~~~lss~ss~sl----eeia~~~~--~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTV 188 (203)
.|+.++|+|+..+|+-++.+ +-.+|. |.+++..+ +....| ..|.....++.-=|-.+|++++..|=
T Consensus 6 ~GneA~A~g~~~ag~~~~~~-YPiTP~t~i~e~l~~~~~~~~~~~~~---~~~E~~a~~~~~GAs~aG~ra~t~ts 77 (595)
T TIGR03336 6 LGNEAIARGALEAGVGVAAA-YPGTPSSEITDTLAKVAKRAGVYFEW---SVNEKVAVEVAAGAAWSGLRAFCTMK 77 (595)
T ss_pred cHHHHHHHHHHHcCCEEEEe-cCCCCHHHHHHHHHHhhhhccEEEEE---CcCHHHHHHHHHHHHhcCcceEEEcc
Confidence 69999999999999887765 333333 44444433 232222 33666667777777889999987764
No 169
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=36.43 E-value=1.2e+02 Score=27.08 Aligned_cols=59 Identities=14% Similarity=0.125 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCCeEEecCCCCCCHHHHHhhc-CCceeE-EEeeeCCHHHHHHHHHHHHHcCCcEEEEee
Q 028838 122 VATARAAASCNTIMVLSFTSSSSIEEVAASC-NAVRFY-QLYVFKKRDIAATLVQRAERNGFKALVLTA 188 (203)
Q Consensus 122 ~a~AraA~~~gi~~~lss~ss~sleeia~~~-~~~~w~-Qly~~~d~~~~~~ll~rAe~aG~~AlvvTV 188 (203)
....+.+.+.|+.++.-++. .+-+-|...- .+...+ ++ . +.+..++|+++|+++|+++=
T Consensus 77 ~~~~~~~~~~~v~~v~~~~g-~p~~~i~~lk~~g~~v~~~v---~----s~~~a~~a~~~GaD~Ivv~g 137 (307)
T TIGR03151 77 DELVDLVIEEKVPVVTTGAG-NPGKYIPRLKENGVKVIPVV---A----SVALAKRMEKAGADAVIAEG 137 (307)
T ss_pred HHHHHHHHhCCCCEEEEcCC-CcHHHHHHHHHcCCEEEEEc---C----CHHHHHHHHHcCCCEEEEEC
Confidence 34566677788888765543 2322222211 143322 22 1 23467889999999998843
No 170
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=36.16 E-value=59 Score=26.11 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeecC
Q 028838 166 RDIAATLVQRAERNGFKALVLTADT 190 (203)
Q Consensus 166 ~~~~~~ll~rAe~aG~~AlvvTVD~ 190 (203)
.-.+.+++++|.++|.+..+.|||.
T Consensus 135 ~~~~~~~v~~~~~~g~~v~~wtvn~ 159 (179)
T cd08555 135 LIKDTELIASANKLGLLSRIWTVND 159 (179)
T ss_pred hhcCHHHHHHHHHCCCEEEEEeeCC
Confidence 3456788999999999999999997
No 171
>PRK03732 hypothetical protein; Provisional
Probab=35.69 E-value=47 Score=25.72 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHcCCcEEE-EeecCCCCC
Q 028838 166 RDIAATLVQRAERNGFKALV-LTADTPRLG 194 (203)
Q Consensus 166 ~~~~~~ll~rAe~aG~~Alv-vTVD~p~~g 194 (203)
++.+.+|.++|++.|+.||+ |.+|+...|
T Consensus 66 ~~A~~rm~~~A~~lGAnAVVgvr~d~s~~~ 95 (114)
T PRK03732 66 EEALRRMALHAKELGANAVVNFRFATSNVG 95 (114)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEehhhc
Confidence 56778899999999999976 666664443
No 172
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=35.38 E-value=1.4e+02 Score=28.74 Aligned_cols=65 Identities=12% Similarity=0.062 Sum_probs=37.9
Q ss_pred HHHHHHHHhcCCeEEecCCCCCCHHHHHhhc--CCceeEEEeee--CCHHHHHHHHHHHHHcCCcEEEEe
Q 028838 122 VATARAAASCNTIMVLSFTSSSSIEEVAASC--NAVRFYQLYVF--KKRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 122 ~a~AraA~~~gi~~~lss~ss~sleeia~~~--~~~~w~Qly~~--~d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
..++++|-++|..++.|-.. ..++++.+.. .+....-+... .+-+...+.+++|+++|+..|+++
T Consensus 218 ~~v~eaAL~aGAdiINsVs~-~~~d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~~ie~a~~~Gi~~IIlD 286 (499)
T TIGR00284 218 LDELYEALKAGASGVIMPDV-ENAVELASEKKLPEDAFVVVPGNQPTNYEELAKAVKKLRTSGYSKVAAD 286 (499)
T ss_pred HHHHHHHHHcCCCEEEECCc-cchhHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHHHHCCCCcEEEe
Confidence 34566677778888886433 3455554322 12222223222 122777889999999999766654
No 173
>cd08604 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP
Probab=35.29 E-value=1.4e+02 Score=26.42 Aligned_cols=22 Identities=9% Similarity=0.190 Sum_probs=20.0
Q ss_pred HHHHHHHHHcCCcEEEEeecCC
Q 028838 170 ATLVQRAERNGFKALVLTADTP 191 (203)
Q Consensus 170 ~~ll~rAe~aG~~AlvvTVD~p 191 (203)
.+++++|.++|.+..+.|||.+
T Consensus 240 ~~~v~~a~~~Gl~v~vwTvn~~ 261 (300)
T cd08604 240 TNVVEKLQSANLTVYVEVLRNE 261 (300)
T ss_pred hHHHHHHHHCCCEEEEEEecCC
Confidence 3799999999999999999976
No 174
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=34.66 E-value=91 Score=28.64 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=18.4
Q ss_pred CchHHHHHHHHHHhcCCeEEecC
Q 028838 117 NPEGEVATARAAASCNTIMVLSF 139 (203)
Q Consensus 117 hp~gE~a~AraA~~~gi~~~lss 139 (203)
+.+.-.++.+||++.+.|.++..
T Consensus 25 n~e~~~avi~AAee~~sPvIiq~ 47 (345)
T cd00946 25 SSSTINAVLEAARDAKSPIIIQF 47 (345)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEC
Confidence 44556889999999999988864
No 175
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=34.56 E-value=1.1e+02 Score=29.69 Aligned_cols=67 Identities=19% Similarity=0.112 Sum_probs=45.2
Q ss_pred chHHHHHHHHHHhcCCeEEec---CCCCCCHHHHHhhcC--CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 028838 118 PEGEVATARAAASCNTIMVLS---FTSSSSIEEVAASCN--AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 118 p~gE~a~AraA~~~gi~~~ls---s~ss~sleeia~~~~--~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
-.|+.|+|.||..+|+-+..+ |-+|.=+|.+++..+ +..+. ...|.-....+.-=|-.+|++|+.-|
T Consensus 196 l~GNeAvA~ga~~ag~~~~~~YPiTPsTei~e~la~~~~~~~~~~~---q~E~E~aA~~~a~GAs~aG~Ra~taT 267 (562)
T TIGR03710 196 ISGNEAIALGAIAAGLRFYAAYPITPASDILEFLAKHLKKFGVVVV---QAEDEIAAINMAIGASYAGARAMTAT 267 (562)
T ss_pred eehHHHHHHHHHHhCCceecccCCCChhHHHHHHHHhhhhhCcEEE---eeccHHHHHHHHHhHHhcCCceeecC
Confidence 479999999999999986655 333333344444433 34333 35677777777777888999887554
No 176
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=33.96 E-value=1.5e+02 Score=24.48 Aligned_cols=24 Identities=13% Similarity=0.332 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHcCCcEEEEeecCC
Q 028838 168 IAATLVQRAERNGFKALVLTADTP 191 (203)
Q Consensus 168 ~~~~ll~rAe~aG~~AlvvTVD~p 191 (203)
...++++++.++|.+-.+.|||.+
T Consensus 188 ~~~~~i~~~~~~g~~v~~Wtvn~~ 211 (230)
T cd08563 188 LTEEVVEELKKRGIPVRLWTVNEE 211 (230)
T ss_pred cCHHHHHHHHHCCCEEEEEecCCH
Confidence 457899999999999999999865
No 177
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=33.88 E-value=3.4e+02 Score=24.16 Aligned_cols=81 Identities=21% Similarity=0.229 Sum_probs=44.5
Q ss_pred cCcceEeccccchhccCchHHHHHHHHHHhcCCeEE-e--cC--C----CCCC----H----HHHHhhcCCceeEEEeee
Q 028838 101 ISAPIIIAPTALHKLANPEGEVATARAAASCNTIMV-L--SF--T----SSSS----I----EEVAASCNAVRFYQLYVF 163 (203)
Q Consensus 101 ~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~-l--ss--~----ss~s----l----eeia~~~~~~~w~Qly~~ 163 (203)
...|++++=.|. .++.-...++.++++|+-++ + |. . .... + ++|+++.+-|.|.=+ .
T Consensus 100 ~~~pvi~sI~g~----~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl--~ 173 (334)
T PRK07565 100 VDIPVIASLNGS----SAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKL--S 173 (334)
T ss_pred cCCcEEEEeccC----CHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEe--C
Confidence 346777653332 23444677777777775333 2 11 0 0011 2 233333334544433 3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEe
Q 028838 164 KKRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 164 ~d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
.+.+.+.++.+.++++|+++|+++
T Consensus 174 p~~~~~~~~a~~l~~~G~dgI~~~ 197 (334)
T PRK07565 174 PYFSNLANMAKRLDAAGADGLVLF 197 (334)
T ss_pred CCchhHHHHHHHHHHcCCCeEEEE
Confidence 344456788899999999999885
No 178
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=33.73 E-value=1e+02 Score=28.38 Aligned_cols=68 Identities=10% Similarity=0.115 Sum_probs=44.2
Q ss_pred CchHHHHHHHHHHhcCCeEEecCCCC-----CC---------------HHHHHh-------hcCCceeEEEeeeCCHHH-
Q 028838 117 NPEGEVATARAAASCNTIMVLSFTSS-----SS---------------IEEVAA-------SCNAVRFYQLYVFKKRDI- 168 (203)
Q Consensus 117 hp~gE~a~AraA~~~gi~~~lss~ss-----~s---------------leeia~-------~~~~~~w~Qly~~~d~~~- 168 (203)
+.+.-.++.+||++.+.|.++..... .. ++.++. ...-|-.+.| |...
T Consensus 22 n~e~~~Avi~aAee~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~VPV~lHL----DH~~~ 97 (340)
T cd00453 22 GTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGVPVILHT----DHCAK 97 (340)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCcchHHHhCCCcccccccchhhhhhHHHHHHHHHHHHHHCCCCEEEEc----CCCCC
Confidence 34555789999999999999864331 12 343322 2223433333 7776
Q ss_pred -HHHHHHHHHHcC-----------CcEEEEee
Q 028838 169 -AATLVQRAERNG-----------FKALVLTA 188 (203)
Q Consensus 169 -~~~ll~rAe~aG-----------~~AlvvTV 188 (203)
..+.+++|.++| |.-++++-
T Consensus 98 ~~~e~i~~ai~~G~~~~~~~~~~~FsSVMiDg 129 (340)
T cd00453 98 KLLPWIDGLLDAGEKHFAATGKPLFSSHMIDL 129 (340)
T ss_pred CCHHHHHHHHHcCCccccccCCCCceeEEecC
Confidence 678999999999 88877653
No 179
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=33.54 E-value=83 Score=28.99 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=19.4
Q ss_pred cCchHHHHHHHHHHhcCCeEEecC
Q 028838 116 ANPEGEVATARAAASCNTIMVLSF 139 (203)
Q Consensus 116 ~hp~gE~a~AraA~~~gi~~~lss 139 (203)
.+.+--.++.+||++.+.|.++..
T Consensus 29 ~n~e~~~avi~AAee~~sPVIlq~ 52 (350)
T PRK09197 29 VGTDSINAVLEGAAEAKSPVIIQF 52 (350)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEc
Confidence 344566899999999999999974
No 180
>COG3092 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.33 E-value=38 Score=27.03 Aligned_cols=41 Identities=20% Similarity=0.152 Sum_probs=33.7
Q ss_pred HHHHHhhh-hc-ccCCCCCCCCCCCHHHHHHHHHHhCChhhhh
Q 028838 15 IDLLEKLI-NV-HVCRFQMAAEPVNLNEFQELARLALPKMYYD 55 (203)
Q Consensus 15 ~~~~~~~~-~~-~~~~~~~~~~~~~~~d~~~~Ar~~Lp~~~~~ 55 (203)
.||.+|+. .| .+|++.......++.|.-+.|-++|.+..|+
T Consensus 105 yev~~kl~e~g~al~pv~~kP~Yq~LAdvLkrAf~qLdktfl~ 147 (149)
T COG3092 105 YEVREKLKEAGQALAPVEEKPTYQALADVLKRAFKQLDKTFLD 147 (149)
T ss_pred HHHHHHHHHhCCCCCcCCCCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 58889985 44 7888777777889999999999999988775
No 181
>COG0040 HisG ATP phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=32.88 E-value=1.9e+02 Score=25.96 Aligned_cols=61 Identities=7% Similarity=0.103 Sum_probs=47.3
Q ss_pred HHHhcCCeEEecCCCCCCHHHHHhhcC-----------CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 028838 127 AAASCNTIMVLSFTSSSSIEEVAASCN-----------AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 127 aA~~~gi~~~lss~ss~sleeia~~~~-----------~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
+-+..+-.++.-......+++|.+..| ...|.+++..-+++..-+++.+.++.|+++|+|.
T Consensus 212 vi~a~~~~~i~~n~p~~~ld~v~~llpg~~~pTi~~l~~~~~vav~~vv~~~~~~~~~~~lk~~GA~~Ilv~ 283 (290)
T COG0040 212 VIEARGSKYIMLNAPRERLDEVTALLPGMEGPTILPLADPGWVAVHAVVDESLVWETMEKLKALGASDILVL 283 (290)
T ss_pred HHhhcceeEEEeeCCHHHHHHHHHhccCCCCCcccccCCCCeEEEEEEecchhHHHHHHHHHhcCcceeEEe
Confidence 334455566666666677888876543 2479999999999999999999999999998874
No 182
>cd07901 Adenylation_DNA_ligase_Arch_LigB Adenylation domain of archaeal and bacterial LigB-like DNA ligases. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriophages, eukarya, archaea and bacteria. Bacterial DNA ligases are divided into two broad classes: NAD-dependent and ATP-dependent. All bacterial species have a NAD-dependent DNA ligase (LigA). Some bacterial genomes contain multiple genes for DNA ligases that are predicted to use ATP as their cofactor, including Mycobacterium tuberculosis LigB, LigC, and LigD. This group is composed of archaeal DNA ligases and bacterial proteins similar to Mycobacterium tuberculosis LigB. Members of this group contain adeny
Probab=32.77 E-value=1.4e+02 Score=24.54 Aligned_cols=37 Identities=24% Similarity=0.407 Sum_probs=30.6
Q ss_pred eeCCHHHHHHHHHHHHHcCCcEEEEe-ecCCCC-CCchh
Q 028838 162 VFKKRDIAATLVQRAERNGFKALVLT-ADTPRL-GRREA 198 (203)
Q Consensus 162 ~~~d~~~~~~ll~rAe~aG~~AlvvT-VD~p~~-g~Re~ 198 (203)
...+.+...++++++.+.|...||+- .|+++. |.|..
T Consensus 161 ~~~~~~~~~~~~~~~~~~g~EGiv~K~~~s~Y~~g~Rs~ 199 (207)
T cd07901 161 VTDDPEEAEEFFEEALEAGHEGVMVKSLDSPYQAGRRGK 199 (207)
T ss_pred ecCCHHHHHHHHHHHHHcCCceEEEeCCCCCcCCCCCCC
Confidence 34677889999999999999999997 799984 55754
No 183
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=32.37 E-value=3e+02 Score=27.60 Aligned_cols=67 Identities=18% Similarity=0.266 Sum_probs=46.5
Q ss_pred HHHHHHHHhcCCeEEecCC------------------CCCCHHHHHhhc-----C-CceeEEE---eee-CCH----HHH
Q 028838 122 VATARAAASCNTIMVLSFT------------------SSSSIEEVAASC-----N-AVRFYQL---YVF-KKR----DIA 169 (203)
Q Consensus 122 ~a~AraA~~~gi~~~lss~------------------ss~sleeia~~~-----~-~~~w~Ql---y~~-~d~----~~~ 169 (203)
..+.+.++++|..+++++. ...+++.++... + ..+.+++ |+. .|. +.+
T Consensus 257 ~~~~~iakeaGY~~afT~~~G~~~~~~~~~LpRi~I~~~~sl~~f~~~v~~~~~~~~~r~~h~dld~vyd~dp~qq~~~L 336 (671)
T PRK14582 257 GIALEELKKLGYDMAFTLESGLANASQLDSIPRVLIANNPSLKEFAQQIITVQEKSPQRVMHIDLDYVYDENPQQQDRNI 336 (671)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCCCCCCcCccceEEecCCCCHHHHHHHHhcccCCCCEEEEEeccccccCCCHHHHHHHH
Confidence 4566777888888877631 234666665432 2 3577888 443 343 455
Q ss_pred HHHHHHHHHcCCcEEEEee
Q 028838 170 ATLVQRAERNGFKALVLTA 188 (203)
Q Consensus 170 ~~ll~rAe~aG~~AlvvTV 188 (203)
..+|+|.++.|..+|++-+
T Consensus 337 ~~lLdrlk~~G~ntV~lqa 355 (671)
T PRK14582 337 DVLIQRVKDMQISTVYLQA 355 (671)
T ss_pred HHHHHHHHHcCCCEEEEEe
Confidence 6789999999999999999
No 184
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=32.31 E-value=2.7e+02 Score=23.75 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHcCCcEEEEe
Q 028838 166 RDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 166 ~~~~~~ll~rAe~aG~~AlvvT 187 (203)
...+.++++.+.++|.+..+.|
T Consensus 209 ~~~~~~~v~~~~~~Gl~v~~wT 230 (265)
T cd08564 209 DFWTEEFVKKAHENGLKVMTYF 230 (265)
T ss_pred hhhhHHHHHHHHHcCCEEEEec
Confidence 3456789999999999999998
No 185
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=32.27 E-value=77 Score=30.20 Aligned_cols=113 Identities=17% Similarity=0.244 Sum_probs=66.9
Q ss_pred HHhhcccccccccc-CCCCCCcceee-cCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHH
Q 028838 72 EAFHRITFRPRILV-DVSRIDLSTTI-LDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVA 149 (203)
Q Consensus 72 ~af~~i~L~pRvL~-dv~~~dtst~l-~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia 149 (203)
-.|+++-|+|..+. ..+++|++|.| +-.++..|++-|||--. .|-.+|-+-+.+|-.-++ .-++++|+=+
T Consensus 30 LtynDfliLPg~idF~s~eVsL~t~ltr~itl~tPlvsSpMDTV------tes~MAiaMAl~ggIg~I--HhNctpe~QA 101 (503)
T KOG2550|consen 30 LTYNDFLILPGFIDFASDEVSLQTKLTRNITLNTPLVSSPMDTV------TESEMAIAMALLGGIGFI--HHNCTPEDQA 101 (503)
T ss_pred ccccceeecccccccccccceeehhhhhcccccCceeccCCccc------chhHHHHHHHhcCCceee--ecCCCHHHHH
Confidence 45888999998655 23578888876 67788999999997432 455666666666555455 3455565433
Q ss_pred hhc------CCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCCC
Q 028838 150 ASC------NAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPR 192 (203)
Q Consensus 150 ~~~------~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p~ 192 (203)
... .+...-+-.+......+-+.++.=+..|+..+-+|-|.-.
T Consensus 102 ~~v~~vK~~~~g~~~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~ 150 (503)
T KOG2550|consen 102 DMVRRVKNYENGFINNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKR 150 (503)
T ss_pred HHHHHHHHhhcccccCCcccCCcccchhhhhhcccccccccccccCCcc
Confidence 321 1100000011111223345555555689999988877554
No 186
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=31.99 E-value=1.1e+02 Score=27.33 Aligned_cols=35 Identities=9% Similarity=0.068 Sum_probs=26.4
Q ss_pred CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEee
Q 028838 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTA 188 (203)
Q Consensus 154 ~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTV 188 (203)
-+.|.-|-+..+.+.+.++.+.++++|+++|.++-
T Consensus 203 ~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n 237 (327)
T cd04738 203 VPLLVKIAPDLSDEELEDIADVALEHGVDGIIATN 237 (327)
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEC
Confidence 35666665444555778899999999999998874
No 187
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=31.27 E-value=1.1e+02 Score=27.52 Aligned_cols=36 Identities=8% Similarity=0.061 Sum_probs=25.7
Q ss_pred CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeec
Q 028838 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTAD 189 (203)
Q Consensus 154 ~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD 189 (203)
-|.|.=|-+.-+.+.+.++.+.++++|+++|+++=-
T Consensus 212 ~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt 247 (344)
T PRK05286 212 VPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNT 247 (344)
T ss_pred CceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCC
Confidence 355554443334456888999999999999999753
No 188
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=31.04 E-value=1.5e+02 Score=25.51 Aligned_cols=24 Identities=21% Similarity=0.484 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHcCCcEEEEee--cCC
Q 028838 168 IAATLVQRAERNGFKALVLTA--DTP 191 (203)
Q Consensus 168 ~~~~ll~rAe~aG~~AlvvTV--D~p 191 (203)
...++++++.++|.+-.+.|| |.+
T Consensus 233 ~~~~~v~~~~~~Gl~v~~WTv~~n~~ 258 (286)
T cd08606 233 MCPRLIQVVKRSGLVCVSYGVLNNDP 258 (286)
T ss_pred hChHHHHHHHHCCcEEEEECCccCCH
Confidence 346889999999999999999 654
No 189
>PRK11633 cell division protein DedD; Provisional
Probab=30.93 E-value=1.2e+02 Score=26.13 Aligned_cols=38 Identities=16% Similarity=0.263 Sum_probs=33.9
Q ss_pred CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCC
Q 028838 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTP 191 (203)
Q Consensus 154 ~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p 191 (203)
+.++.||=-++|.+...++..+...+||.|-+..+++.
T Consensus 148 ~~~vVQlgaf~n~~~A~~l~~kL~~~G~~Ay~~~~~~~ 185 (226)
T PRK11633 148 KAYVVQLGALKNADKVNEIVAKLRLSGYRVYTVPSTPV 185 (226)
T ss_pred CcEEEEecccCCHHHHHHHHHHHHHCCCeeEEEeeecC
Confidence 45889999999999999999999999999999877643
No 190
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=30.79 E-value=1.7e+02 Score=25.72 Aligned_cols=67 Identities=18% Similarity=0.167 Sum_probs=43.0
Q ss_pred HHHHHHHHhcCCeEEecCCCCCCHHHHHhhc--CCceeEEEeeeCCHHHHHHHHHHHH-HcCCcEEEEeecCCC
Q 028838 122 VATARAAASCNTIMVLSFTSSSSIEEVAASC--NAVRFYQLYVFKKRDIAATLVQRAE-RNGFKALVLTADTPR 192 (203)
Q Consensus 122 ~a~AraA~~~gi~~~lss~ss~sleeia~~~--~~~~w~Qly~~~d~~~~~~ll~rAe-~aG~~AlvvTVD~p~ 192 (203)
.-+.|.|++.-||++++-. ..++|++.+.. +.-+ +..+..-=..-++|.++. +-|...||+.||+-.
T Consensus 64 ~vv~r~A~~vfiPltVGGG-I~s~eD~~~ll~aGADK---VSINsaAv~~p~lI~~~a~~FGsQciVvaIDakr 133 (256)
T COG0107 64 DVVERVAEQVFIPLTVGGG-IRSVEDARKLLRAGADK---VSINSAAVKDPELITEAADRFGSQCIVVAIDAKR 133 (256)
T ss_pred HHHHHHHhhceeeeEecCC-cCCHHHHHHHHHcCCCe---eeeChhHhcChHHHHHHHHHhCCceEEEEEEeee
Confidence 3577889999999999854 46788887643 2111 222221111224555544 479999999999865
No 191
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=30.65 E-value=2.1e+02 Score=26.02 Aligned_cols=58 Identities=12% Similarity=0.157 Sum_probs=34.8
Q ss_pred HHHHHHHHhcCCeEEecCCCCCCHHHHHhhc-CCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 028838 122 VATARAAASCNTIMVLSFTSSSSIEEVAASC-NAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 122 ~a~AraA~~~gi~~~lss~ss~sleeia~~~-~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
....+.+.+.++++++.++..- .++.+.- .++.++-. -. +.++.++++++|+++||+.
T Consensus 72 ~~~l~vi~e~~v~~V~~~~G~P--~~~~~lk~~Gi~v~~~--v~----s~~~A~~a~~~GaD~vVaq 130 (320)
T cd04743 72 AAQLAVVRAIKPTFALIAGGRP--DQARALEAIGISTYLH--VP----SPGLLKQFLENGARKFIFE 130 (320)
T ss_pred HHHHHHHHhcCCcEEEEcCCCh--HHHHHHHHCCCEEEEE--eC----CHHHHHHHHHcCCCEEEEe
Confidence 3567777888999888765432 2332221 24443311 11 2244578999999999874
No 192
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=30.58 E-value=3e+02 Score=22.96 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecC
Q 028838 167 DIAATLVQRAERNGFKALVLTADT 190 (203)
Q Consensus 167 ~~~~~ll~rAe~aG~~AlvvTVD~ 190 (203)
+...+.++.|++.|....+-..|+
T Consensus 115 ~~~~~~i~~a~~~G~~v~~~~~~~ 138 (265)
T cd03174 115 ENAEEAIEAAKEAGLEVEGSLEDA 138 (265)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEee
Confidence 444555566666665443333343
No 193
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=30.55 E-value=1.4e+02 Score=24.62 Aligned_cols=71 Identities=15% Similarity=0.149 Sum_probs=41.9
Q ss_pred HHHHHHHHhcCC--eEEecCCCCCCHHHHHhhcCCceeEEE---------------eeeCCHHHHHHHHHHHHHcCCcEE
Q 028838 122 VATARAAASCNT--IMVLSFTSSSSIEEVAASCNAVRFYQL---------------YVFKKRDIAATLVQRAERNGFKAL 184 (203)
Q Consensus 122 ~a~AraA~~~gi--~~~lss~ss~sleeia~~~~~~~w~Ql---------------y~~~d~~~~~~ll~rAe~aG~~Al 184 (203)
..+++.-.+.|. ..+++|+....+..+.+..|......+ +-..-.....++++++.++|.+..
T Consensus 115 ~~v~~~l~~~~~~~~v~v~Sf~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~v~ 194 (220)
T cd08579 115 EKFVKLYKQNLIENQHQVHSLDYRVIEKVKKLDPKIKTGYILPFNIGNLPKTNVDFYSIEYSTLNKEFIRQAHQNGKKVY 194 (220)
T ss_pred HHHHHHHHHcCCCcCeEEEeCCHHHHHHHHHHCCCCeEEEEEecccCcccccCceEEeeehhhcCHHHHHHHHHCCCEEE
Confidence 334444444442 346666766666777665553211001 111113345688999999999999
Q ss_pred EEeecCCC
Q 028838 185 VLTADTPR 192 (203)
Q Consensus 185 vvTVD~p~ 192 (203)
+.|||.+.
T Consensus 195 ~wtvn~~~ 202 (220)
T cd08579 195 VWTVNDPD 202 (220)
T ss_pred EEcCCCHH
Confidence 99999753
No 194
>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia
Probab=29.86 E-value=94 Score=27.88 Aligned_cols=72 Identities=8% Similarity=0.009 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhcCCe--EEecCCCCCCHHHHHhhcCCcee------------EEEeeeCCHHHHHHHHHHHHHcCCcEEE
Q 028838 120 GEVATARAAASCNTI--MVLSFTSSSSIEEVAASCNAVRF------------YQLYVFKKRDIAATLVQRAERNGFKALV 185 (203)
Q Consensus 120 gE~a~AraA~~~gi~--~~lss~ss~sleeia~~~~~~~w------------~Qly~~~d~~~~~~ll~rAe~aG~~Alv 185 (203)
-+..+.+..++.++. .+++ .+...++++.+..|.... .+.+.+....++.+.++++.++|.+..+
T Consensus 172 f~~~vl~~i~~~~~~~~~v~~-~~~~~l~~~~~~~P~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~v~~~~~~G~~v~v 250 (315)
T cd08609 172 FVFYTLETILKLGIPPDKVWW-LPDEYRHDVMKMEPGFKQVYGRQKEMLMDGGNFMNLPYQDLSALEIKELRKDNVSVNL 250 (315)
T ss_pred HHHHHHHHHHHcCCCcceEEE-eCHHHHHHHHHhCcCceeecccchhhHhcCCeEEecccccCCHHHHHHHHHCCCEEEE
Confidence 345666777777753 2221 223345666554432110 0112233344567899999999999999
Q ss_pred EeecCCC
Q 028838 186 LTADTPR 192 (203)
Q Consensus 186 vTVD~p~ 192 (203)
.|||.+.
T Consensus 251 WTVNd~~ 257 (315)
T cd08609 251 WVVNEPW 257 (315)
T ss_pred ECCCCHH
Confidence 9999754
No 195
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=29.75 E-value=4.4e+02 Score=24.17 Aligned_cols=116 Identities=13% Similarity=0.123 Sum_probs=65.5
Q ss_pred hhccccccccccCCCCCCcce----eecCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEE-----ecCCCCCC
Q 028838 74 FHRITFRPRILVDVSRIDLST----TILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMV-----LSFTSSSS 144 (203)
Q Consensus 74 f~~i~L~pRvL~dv~~~dtst----~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~-----lss~ss~s 144 (203)
+.+++|-+..+..+..|...+ .++|.. .-|++.+-+=-.++ .|+.-..++......|+-++ ++++...+
T Consensus 94 L~D~~~p~~~~~~f~GP~~Gi~g~R~~lgv~-~rPl~~tiiKP~GL-~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~~p 171 (364)
T cd08210 94 LVDFELPPSLLRRFPGPRFGIAGLRALLGIP-ERPLLCSALKPQGL-SAAELAELAYAFALGGIDIIKDDHGLADQPFAP 171 (364)
T ss_pred EEEecCCHHHHhcCCCCCCChHHHHHHhCCC-CCceEEEEeccccC-CHHHHHHHHHHHHhcCCCeeecCccccCccCCC
Confidence 344555566665555544322 244432 45655443211244 35555667777777897776 66777788
Q ss_pred HHHHHhh--------c---CCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCC
Q 028838 145 IEEVAAS--------C---NAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTP 191 (203)
Q Consensus 145 leeia~~--------~---~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p 191 (203)
+||-.++ . +....+=.=+-.+.+...+..++|+++|+.++.|.+-+-
T Consensus 172 ~~eRv~~v~~av~~a~~eTG~~~~y~~Nita~~~em~~ra~~a~~~Ga~~vMv~~~~~ 229 (364)
T cd08210 172 FEERVKACQEAVAEANAETGGRTLYAPNVTGPPTQLLERARFAKEAGAGGVLIAPGLT 229 (364)
T ss_pred HHHHHHHHHHHHHHHHhhcCCcceEEEecCCCHHHHHHHHHHHHHcCCCEEEeecccc
Confidence 8764221 1 122222111234566777778888889999887766543
No 196
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=29.66 E-value=2e+02 Score=24.14 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHcCCcEEEEeecCC
Q 028838 168 IAATLVQRAERNGFKALVLTADTP 191 (203)
Q Consensus 168 ~~~~ll~rAe~aG~~AlvvTVD~p 191 (203)
...++++++.++|.+..+.|||.+
T Consensus 219 ~~~~~i~~~~~~G~~v~vwtvn~~ 242 (263)
T cd08567 219 VTKELVDEAHALGLKVVPWTVNDP 242 (263)
T ss_pred cCHHHHHHHHHCCCEEEEecCCCH
Confidence 456889999999999999999864
No 197
>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin
Probab=29.58 E-value=1.6e+02 Score=26.22 Aligned_cols=69 Identities=12% Similarity=0.154 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhc--CCeEEecCCCCCC-------HHHHHhhcCCceeEEEee-----eCCHHHHHHHHHHHHHcCCcEEE
Q 028838 120 GEVATARAAASC--NTIMVLSFTSSSS-------IEEVAASCNAVRFYQLYV-----FKKRDIAATLVQRAERNGFKALV 185 (203)
Q Consensus 120 gE~a~AraA~~~--gi~~~lss~ss~s-------leeia~~~~~~~w~Qly~-----~~d~~~~~~ll~rAe~aG~~Alv 185 (203)
+-..+++.+++. .+..++|...... .+++.....+..|.|+|. ..|.++...+.+.+.++|+.+..
T Consensus 38 a~~~~~~~i~~~~Pd~IVViSpHw~~~~~~~~~~~p~~~G~~~~~~~p~~~~~~~~~~gd~eLA~~i~~~~~~~Gi~~~~ 117 (294)
T cd07372 38 AYERARESIEALKPDVLLVHSPHWITSVGHHFLGVPELSGRSVDPIFPNLFRYDFSMNVDVELAEACCEEGRKAGLVTKM 117 (294)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCcccccCeeeecCCcccccccccccccceeeccCCCCCHHHHHHHHHHHHHCCCCeee
Confidence 445555555554 6788888752221 111211112222344533 46999999999999999998875
Q ss_pred Eee
Q 028838 186 LTA 188 (203)
Q Consensus 186 vTV 188 (203)
++.
T Consensus 118 ~~~ 120 (294)
T cd07372 118 MRN 120 (294)
T ss_pred ccC
Confidence 433
No 198
>cd08571 GDPD_SHV3_plant Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase (GDPD) domain present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserv
Probab=29.55 E-value=3e+02 Score=24.34 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=19.9
Q ss_pred HHHHHHHHcCCcEEEEeecCCC
Q 028838 171 TLVQRAERNGFKALVLTADTPR 192 (203)
Q Consensus 171 ~ll~rAe~aG~~AlvvTVD~p~ 192 (203)
+++++|.++|.+..+.||+.+.
T Consensus 242 ~~V~~ah~~Gl~V~~wTvn~~~ 263 (302)
T cd08571 242 SVVQDAHKAGLEVYVSGFANEF 263 (302)
T ss_pred HHHHHHHHcCCEEEEEEEecCc
Confidence 7899999999999999998754
No 199
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=29.44 E-value=1.6e+02 Score=25.69 Aligned_cols=75 Identities=12% Similarity=0.206 Sum_probs=45.2
Q ss_pred HHHHHHHHhcCCeEEecCCCCCCHHHHHhhc------C--CceeEE----Ee-eeCCHHHHHHHHHHHHH-cCCcEEEEe
Q 028838 122 VATARAAASCNTIMVLSFTSSSSIEEVAASC------N--AVRFYQ----LY-VFKKRDIAATLVQRAER-NGFKALVLT 187 (203)
Q Consensus 122 ~a~AraA~~~gi~~~lss~ss~sleeia~~~------~--~~~w~Q----ly-~~~d~~~~~~ll~rAe~-aG~~AlvvT 187 (203)
..+.+++++.|.|+.+|+....+++|+..+. + .+...+ -| ...+.......|...++ .|+. |+++
T Consensus 122 ~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~p-V~~d 200 (260)
T TIGR01361 122 FELLKEVGKQGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETHLP-IIVD 200 (260)
T ss_pred HHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCC-EEEc
Confidence 5689999999999999998877899886653 2 222222 23 33333444444444444 4653 4554
Q ss_pred ecCCCCCCchh
Q 028838 188 ADTPRLGRREA 198 (203)
Q Consensus 188 VD~p~~g~Re~ 198 (203)
.|.. .|+|+.
T Consensus 201 s~Hs-~G~r~~ 210 (260)
T TIGR01361 201 PSHA-AGRRDL 210 (260)
T ss_pred CCCC-CCccch
Confidence 5543 566653
No 200
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=29.29 E-value=1.2e+02 Score=27.43 Aligned_cols=34 Identities=6% Similarity=-0.001 Sum_probs=26.9
Q ss_pred CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 028838 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 154 ~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
-|.|.=|.+.-+.+.+.++++.++++|+++|+++
T Consensus 211 ~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~ 244 (335)
T TIGR01036 211 VPVLVKIAPDLTESDLEDIADSLVELGIDGVIAT 244 (335)
T ss_pred CceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEE
Confidence 4666666665566678899999999999999875
No 201
>PF04217 DUF412: Protein of unknown function, DUF412; InterPro: IPR007334 This family consists of bacterial uncharacterised proteins.
Probab=29.20 E-value=52 Score=26.56 Aligned_cols=42 Identities=17% Similarity=0.144 Sum_probs=31.8
Q ss_pred hHHHHHhhh-hc-ccCCCCCCCCCCCHHHHHHHHHHhCChhhhh
Q 028838 14 GIDLLEKLI-NV-HVCRFQMAAEPVNLNEFQELARLALPKMYYD 55 (203)
Q Consensus 14 ~~~~~~~~~-~~-~~~~~~~~~~~~~~~d~~~~Ar~~Lp~~~~~ 55 (203)
-.||..|+. .| ++++...-.+..+++++-+.|-++|++..|+
T Consensus 99 y~ei~~Kl~~~g~~~~~~~~~P~Y~dLA~lL~~Af~~LDk~f~~ 142 (143)
T PF04217_consen 99 YHEIRQKLQEQGIALQPVKSKPRYQDLAELLKRAFKQLDKSFWE 142 (143)
T ss_pred HHHHHHHHHHcCCccCCCCCCCCHHHHHHHHHHHHHHhHHHHhc
Confidence 368889996 55 5666554567788999999999999887664
No 202
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=28.96 E-value=1.8e+02 Score=24.00 Aligned_cols=65 Identities=15% Similarity=0.056 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCCeEEecCCCCCCHHHHHhhcCCce-e--EEEeeeCCH--HHHHHHHHHHHHcCCcEEEEe
Q 028838 122 VATARAAASCNTIMVLSFTSSSSIEEVAASCNAVR-F--YQLYVFKKR--DIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 122 ~a~AraA~~~gi~~~lss~ss~sleeia~~~~~~~-w--~Qly~~~d~--~~~~~ll~rAe~aG~~AlvvT 187 (203)
..+++++.+.|+.. ++-.+-.-+++|.+...-|. + .+-+...+- +...+.++.|.++|++.|++.
T Consensus 30 ~~~a~~~~~~G~~~-~~~~~~~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~ 99 (219)
T cd04729 30 AAMALAAVQGGAVG-IRANGVEDIRAIRARVDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALD 99 (219)
T ss_pred HHHHHHHHHCCCeE-EEcCCHHHHHHHHHhCCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEe
Confidence 78999999999975 33222223345544322121 1 111100000 112457899999999966654
No 203
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=28.86 E-value=60 Score=24.64 Aligned_cols=42 Identities=17% Similarity=0.251 Sum_probs=27.0
Q ss_pred cCchHHHHHHHHHHhcCCeEEecCCC--CCCHHHHHhhcCCcee
Q 028838 116 ANPEGEVATARAAASCNTIMVLSFTS--SSSIEEVAASCNAVRF 157 (203)
Q Consensus 116 ~hp~gE~a~AraA~~~gi~~~lss~s--s~sleeia~~~~~~~w 157 (203)
.+|+.-...++.|.+.|+++++||-. ..-++++.+.+....+
T Consensus 75 T~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~~~v 118 (124)
T PF01113_consen 75 TNPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEELAKKIPV 118 (124)
T ss_dssp S-HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHTTTSEE
T ss_pred CChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHHhccCCE
Confidence 36888889999999999999999843 3334556555543333
No 204
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=28.64 E-value=1.5e+02 Score=26.32 Aligned_cols=30 Identities=13% Similarity=0.173 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeecCCCCCC
Q 028838 166 RDIAATLVQRAERNGFKALVLTADTPRLGR 195 (203)
Q Consensus 166 ~~~~~~ll~rAe~aG~~AlvvTVD~p~~g~ 195 (203)
.+.+.+++++.+++|+++|.|+-=++.-..
T Consensus 137 ~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~ 166 (309)
T PF01207_consen 137 PEETIEFARILEDAGVSAITVHGRTRKQRY 166 (309)
T ss_dssp CHHHHHHHHHHHHTT--EEEEECS-TTCCC
T ss_pred hhHHHHHHHHhhhcccceEEEecCchhhcC
Confidence 677899999999999999888765544433
No 205
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=28.51 E-value=1.2e+02 Score=22.69 Aligned_cols=36 Identities=14% Similarity=0.021 Sum_probs=28.4
Q ss_pred CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeec
Q 028838 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTAD 189 (203)
Q Consensus 154 ~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD 189 (203)
+...+=+-..+.-..+.+.++.|++.|++.|++|=.
T Consensus 48 ~dl~I~iS~SG~t~~~~~~~~~a~~~g~~vi~iT~~ 83 (120)
T cd05710 48 KSVVILASHSGNTKETVAAAKFAKEKGATVIGLTDD 83 (120)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHcCCeEEEEECC
Confidence 444555666677788889999999999999999854
No 206
>COG4252 Predicted transmembrane sensor domain [Signal transduction mechanisms]
Probab=28.30 E-value=73 Score=29.85 Aligned_cols=31 Identities=16% Similarity=-0.013 Sum_probs=26.6
Q ss_pred eeCCHHHHHHHHHHHHHcCCcEEEEeecCCC
Q 028838 162 VFKKRDIAATLVQRAERNGFKALVLTADTPR 192 (203)
Q Consensus 162 ~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p~ 192 (203)
++.++....++|++-+++|.++|.++|.-..
T Consensus 78 wp~pr~~~A~Ll~kL~a~qp~aIgLDi~r~~ 108 (400)
T COG4252 78 WPWPRAALARLLDKLAAAQPRAIGLDIYRDL 108 (400)
T ss_pred CCCCHHHHHHHHHHHHhcCCcEEEEEEeecC
Confidence 4668999999999999999999999995433
No 207
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=28.18 E-value=1.2e+02 Score=26.21 Aligned_cols=95 Identities=12% Similarity=0.165 Sum_probs=54.4
Q ss_pred eeecCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEec-CCCC----CCHHHHHhhcCCceeEEEeeeCCHHH
Q 028838 94 TTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLS-FTSS----SSIEEVAASCNAVRFYQLYVFKKRDI 168 (203)
Q Consensus 94 t~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~ls-s~ss----~sleeia~~~~~~~w~Qly~~~d~~~ 168 (203)
+.+.+.-+..|++...+.+.. .+.-..++++-...++-.+++ ...+ .-+|.|+...+-.....| |.+|..
T Consensus 51 ~~~~Ae~~gi~l~~~~~~g~~---e~eve~L~~~l~~l~~d~iv~GaI~s~yqk~rve~lc~~lGl~~~~PL-Wg~d~~- 125 (223)
T COG2102 51 AELQAEAMGIPLVTFDTSGEE---EREVEELKEALRRLKVDGIVAGAIASEYQKERVERLCEELGLKVYAPL-WGRDPE- 125 (223)
T ss_pred HHHHHHhcCCceEEEecCccc---hhhHHHHHHHHHhCcccEEEEchhhhHHHHHHHHHHHHHhCCEEeecc-cCCCHH-
Confidence 345666777788888876632 112256666666666444443 2222 245666666542111111 123443
Q ss_pred HHHHHHHHHHcCCcEEEEeecCCCCCC
Q 028838 169 AATLVQRAERNGFKALVLTADTPRLGR 195 (203)
Q Consensus 169 ~~~ll~rAe~aG~~AlvvTVD~p~~g~ 195 (203)
++++.-..+|+++++|-|++..++.
T Consensus 126 --ell~e~~~~Gf~~~Iv~Vsa~gL~~ 150 (223)
T COG2102 126 --ELLEEMVEAGFEAIIVAVSAEGLDE 150 (223)
T ss_pred --HHHHHHHHcCCeEEEEEEeccCCCh
Confidence 3444455689999999999988774
No 208
>KOG2794 consensus Delta-aminolevulinic acid dehydratase [Coenzyme transport and metabolism]
Probab=28.06 E-value=92 Score=28.07 Aligned_cols=48 Identities=25% Similarity=0.331 Sum_probs=38.7
Q ss_pred CHHHHHhhcC---CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCCC
Q 028838 144 SIEEVAASCN---AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPR 192 (203)
Q Consensus 144 sleeia~~~~---~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p~ 192 (203)
++.|.+..+| ..+-+|| +...|++..+-++|=++-|++-|+|-=-.|.
T Consensus 216 pFR~aa~saP~fgDrkcYQl-P~~~R~la~rA~erD~aEGAD~lmVKPg~py 266 (340)
T KOG2794|consen 216 PFREAACSAPKFGDRKCYQL-PANSRGLALRARERDVAEGADILMVKPGLPY 266 (340)
T ss_pred chHHHhhcCcccCCcceeeC-CCchHHHHHHHHHhhhhccCceEEecCCCcH
Confidence 6677776665 4678999 8889999999999999999999998654443
No 209
>PRK01816 hypothetical protein; Provisional
Probab=27.90 E-value=73 Score=25.73 Aligned_cols=41 Identities=20% Similarity=0.157 Sum_probs=31.0
Q ss_pred HHHHHhhh-hc-ccCCCCCCCCCCCHHHHHHHHHHhCChhhhh
Q 028838 15 IDLLEKLI-NV-HVCRFQMAAEPVNLNEFQELARLALPKMYYD 55 (203)
Q Consensus 15 ~~~~~~~~-~~-~~~~~~~~~~~~~~~d~~~~Ar~~Lp~~~~~ 55 (203)
.+|.+|+. .| .+.++..-.+..+++++-+.|-++|++..|+
T Consensus 99 ~el~~Kl~~~g~~~~p~~~~P~Y~dLA~lLk~Af~~ld~~f~~ 141 (143)
T PRK01816 99 YEVREKLQEAGQALAPVEGKPTYQALADLLKRAFKQLDKTFLD 141 (143)
T ss_pred HHHHHHHHHcCCccCCCCCCCCHHHHHHHHHHHHHHcCHHHHh
Confidence 67888885 45 5555433556788999999999999988765
No 210
>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=27.76 E-value=3.7e+02 Score=25.34 Aligned_cols=79 Identities=20% Similarity=0.161 Sum_probs=53.9
Q ss_pred CchHHHHHHHHHHhcCCeEEecCCCCCC----------------------HHHHHhhc-CCceeEEEeeeCCHHHHHHHH
Q 028838 117 NPEGEVATARAAASCNTIMVLSFTSSSS----------------------IEEVAASC-NAVRFYQLYVFKKRDIAATLV 173 (203)
Q Consensus 117 hp~gE~a~AraA~~~gi~~~lss~ss~s----------------------leeia~~~-~~~~w~Qly~~~d~~~~~~ll 173 (203)
.|+--...++..++.|.|+++-|+...- ++|+++-+ ..-.=.-|.-++|-+..+.|.
T Consensus 144 dpekfa~ave~v~~~~~pv~l~s~dpevmkaaLev~~dqkPllYaAte~n~~e~~klav~y~vplvl~a~~dl~~lk~la 223 (467)
T COG1456 144 DPEKFAEAVEKVAEAGLPVILCSFDPEVMKAALEVVKDQKPLLYAATEDNWKEFAKLAVEYKVPLVLSAFNDLDDLKNLA 223 (467)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhhccCceeeecccccHHHHHHHHhhcCCcEEEeccCCHHHHHHHH
Confidence 4555677888888899999998875432 23333322 110112355567999999999
Q ss_pred HHHHHcCCcEEEEeecCCCCCC
Q 028838 174 QRAERNGFKALVLTADTPRLGR 195 (203)
Q Consensus 174 ~rAe~aG~~AlvvTVD~p~~g~ 195 (203)
.++.++|.+-||++=-+-..|.
T Consensus 224 ~~~~~~Gi~divLdPgT~p~~e 245 (467)
T COG1456 224 VTYAQAGIKDIVLDPGTYPGGE 245 (467)
T ss_pred HHHHHcCCceEEecCCcccCcc
Confidence 9999999999999766555443
No 211
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=27.55 E-value=4.2e+02 Score=23.53 Aligned_cols=63 Identities=14% Similarity=0.085 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcCCeEEecCCCCCCHHHHHhhc--CCceeEEEeeeCC--HHHHHHHHHHHHHcCCcEE
Q 028838 121 EVATARAAASCNTIMVLSFTSSSSIEEVAASC--NAVRFYQLYVFKK--RDIAATLVQRAERNGFKAL 184 (203)
Q Consensus 121 E~a~AraA~~~gi~~~lss~ss~sleeia~~~--~~~~w~Qly~~~d--~~~~~~ll~rAe~aG~~Al 184 (203)
-..+++-.++.++|++++- +..+++++.... ....++|+.+.+- -....++.+.|++.|.+..
T Consensus 217 ~~~~~~l~~~~~~pia~dE-s~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i~~~A~~~gi~~~ 283 (354)
T cd03317 217 LIDHAELQKLLKTPICLDE-SIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIHDLCQEHGIPVW 283 (354)
T ss_pred HHHHHHHHhhcCCCEEeCC-ccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCcEE
Confidence 3566777788899988864 667888887764 3567889987664 4555788999999998754
No 212
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=27.54 E-value=1.6e+02 Score=26.69 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEe
Q 028838 165 KRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 165 d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
+.+.+.++.+.|+++|+++|+++
T Consensus 171 ~~~di~~iA~~~~~~g~Dgl~~~ 193 (310)
T COG0167 171 NITDIDEIAKAAEEAGADGLIAI 193 (310)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEE
Confidence 88999999999999999999886
No 213
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=27.48 E-value=4.9e+02 Score=24.14 Aligned_cols=84 Identities=10% Similarity=0.025 Sum_probs=49.3
Q ss_pred ccc-CcceEeccccchhccCchHHHHHHHHHHhcCCeEE---ecCCCC-----------C---CHHHHHhh----cCCce
Q 028838 99 YKI-SAPIIIAPTALHKLANPEGEVATARAAASCNTIMV---LSFTSS-----------S---SIEEVAAS----CNAVR 156 (203)
Q Consensus 99 ~~~-s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~---lss~ss-----------~---sleeia~~----~~~~~ 156 (203)
+++ ..|++.|=++.. .++.-..+++-.++.|+-++ +|.--. . .+++|.+. ..-|.
T Consensus 109 ~~~~~~pvIaSi~~~~---s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~iPv 185 (385)
T PLN02495 109 EEYPDRILIASIMEEY---NKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKATVPV 185 (385)
T ss_pred hhCCCCcEEEEccCCC---CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhcCce
Confidence 344 458888744422 24555778888888775333 222111 1 13344332 23466
Q ss_pred eEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 028838 157 FYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 157 w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
|.=| ..|-..+.++.+.|+++|+++|+++
T Consensus 186 ~vKL--sPn~t~i~~ia~aa~~~Gadgi~li 214 (385)
T PLN02495 186 WAKM--TPNITDITQPARVALKSGCEGVAAI 214 (385)
T ss_pred EEEe--CCChhhHHHHHHHHHHhCCCEEEEe
Confidence 6544 4455558889999999999999874
No 214
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=27.41 E-value=3.1e+02 Score=26.62 Aligned_cols=138 Identities=18% Similarity=0.179 Sum_probs=85.2
Q ss_pred CCCHHHHHHHHHHhCChhhh--hh--hcCCccchhhHHHHHHHhhccccccccccCCCCCCcceeecCcccCcceEeccc
Q 028838 35 PVNLNEFQELARLALPKMYY--DF--YAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPT 110 (203)
Q Consensus 35 ~~~~~d~~~~Ar~~Lp~~~~--~Y--~~gGa~de~T~~~N~~af~~i~L~pRvL~dv~~~dtst~l~G~~~s~Pi~iaP~ 110 (203)
.+++..+...++...+.... +. +.+|-++.....+....-+. ..++. +.--+..++-+.++.||+.=++
T Consensus 19 ~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~dviI---srG~ta~~i~~~~~iPVv~i~~ 91 (538)
T PRK15424 19 TVSVSRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKRLATER----CDAII---AAGSNGAYLKSRLSVPVILIKP 91 (538)
T ss_pred EeeHHHHHHHHHHHHHhcCCCceEEehhhhHHHHHHHHHHHHhhCC----CcEEE---ECchHHHHHHhhCCCCEEEecC
Confidence 46889999999988875532 11 24555555544433221111 12222 1234456777889999988765
Q ss_pred cchhccCchHHHHHHHHHHhcCCeEEecCCCC-CCHHHHHhhcCCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEE
Q 028838 111 ALHKLANPEGEVATARAAASCNTIMVLSFTSS-SSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVL 186 (203)
Q Consensus 111 g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss-~sleeia~~~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~Alvv 186 (203)
.+. |--.+++++=.-.+-..++|-... ..++.+....+-. +..|...+.+.....|+++++.|++.||=
T Consensus 92 s~~-----Dil~al~~a~~~~~~iavv~~~~~~~~~~~~~~~l~~~--i~~~~~~~~~e~~~~v~~lk~~G~~~vvG 161 (538)
T PRK15424 92 SGF-----DVMQALARARKLTSSIGVVTYQETIPALVAFQKTFNLR--IEQRSYVTEEDARGQINELKANGIEAVVG 161 (538)
T ss_pred CHh-----HHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCc--eEEEEecCHHHHHHHHHHHHHCCCCEEEc
Confidence 442 555677666554555555554333 3455666655421 25577888999999999999999998873
No 215
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=27.21 E-value=2.2e+02 Score=23.69 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHcCCcEEEEeecCCC
Q 028838 168 IAATLVQRAERNGFKALVLTADTPR 192 (203)
Q Consensus 168 ~~~~ll~rAe~aG~~AlvvTVD~p~ 192 (203)
...++++++.+.|.+-.+.|||.+.
T Consensus 192 ~~~~~v~~~~~~gl~v~~wTvn~~~ 216 (234)
T cd08570 192 FGQAFLPELKKNGKKVFVWTVNTEE 216 (234)
T ss_pred cCHHHHHHHHHCCCEEEEEecCCHH
Confidence 5689999999999999999999753
No 216
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=27.06 E-value=1.9e+02 Score=24.83 Aligned_cols=24 Identities=13% Similarity=0.140 Sum_probs=20.4
Q ss_pred HHHHHHHHHHcCCcEEEEee--cCCC
Q 028838 169 AATLVQRAERNGFKALVLTA--DTPR 192 (203)
Q Consensus 169 ~~~ll~rAe~aG~~AlvvTV--D~p~ 192 (203)
+.+++++|.++|.+-.+.|| |.+-
T Consensus 239 ~~~~v~~~~~~Gl~v~vWTv~~n~~~ 264 (282)
T cd08605 239 NPTAVSLVKASGLELGTYGKLNNDAE 264 (282)
T ss_pred CcHHHHHHHHcCcEEEEeCCCCCCHH
Confidence 56889999999999999998 7643
No 217
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=27.00 E-value=1.2e+02 Score=27.42 Aligned_cols=56 Identities=18% Similarity=0.188 Sum_probs=39.6
Q ss_pred HHHHHHHHhcCCeEEecCCCCCCHHHHHhhcCC--------ceeEEEeeeCCHHHHHHHHHHHHHcC
Q 028838 122 VATARAAASCNTIMVLSFTSSSSIEEVAASCNA--------VRFYQLYVFKKRDIAATLVQRAERNG 180 (203)
Q Consensus 122 ~a~AraA~~~gi~~~lss~ss~sleeia~~~~~--------~~w~Qly~~~d~~~~~~ll~rAe~aG 180 (203)
..+.+.|.+.||+.=||..+..+..|+++.... .++. +. -.|++..+.++...+.|
T Consensus 152 k~lV~~~N~LgIiiDlSH~s~kt~~Dvl~~s~~PviaSHSN~~al--~~-h~RNl~D~qlkaI~~~g 215 (313)
T COG2355 152 KELVREMNELGIIIDLSHLSDKTFWDVLDLSKAPVVASHSNARAL--VD-HPRNLSDEQLKAIAETG 215 (313)
T ss_pred HHHHHHHHhcCCEEEecccCCccHHHHHhccCCceEEecCCchhc--cC-CCCCCCHHHHHHHHhcC
Confidence 578899999999999999999999999876422 2222 22 23566666666666654
No 218
>COG2168 DsrH Uncharacterized conserved protein involved in oxidation of intracellular sulfur [Inorganic ion transport and metabolism]
Probab=26.98 E-value=46 Score=25.08 Aligned_cols=38 Identities=21% Similarity=0.290 Sum_probs=30.5
Q ss_pred ChHHHHHhhhhcccCC-CCCCCCCCCHHHHHHHHHHhCChhhh
Q 028838 13 SGIDLLEKLINVHVCR-FQMAAEPVNLNEFQELARLALPKMYY 54 (203)
Q Consensus 13 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~Ar~~Lp~~~~ 54 (203)
=|+|++.+++.++.++ +. .++..+|-+...+..+...|
T Consensus 58 lkeDl~ARGl~~~~s~~v~----~i~y~~fVdLt~~~~~q~~w 96 (96)
T COG2168 58 LKEDLLARGLTGQISREVI----LIDYTEFVDLTEKHDKQMAW 96 (96)
T ss_pred ehhhHHhccchhhcCccee----EeeHHHHHHHHHhhcccccC
Confidence 5899999999888887 33 57899999998887766554
No 219
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=26.59 E-value=3.7e+02 Score=22.25 Aligned_cols=64 Identities=17% Similarity=0.137 Sum_probs=38.9
Q ss_pred HHHHHhcCCeEEecCCCC--CCHHHHHhhcCCceeEEEe--eeCCHHHHHHHHHHHHHcCCcEEEEeec
Q 028838 125 ARAAASCNTIMVLSFTSS--SSIEEVAASCNAVRFYQLY--VFKKRDIAATLVQRAERNGFKALVLTAD 189 (203)
Q Consensus 125 AraA~~~gi~~~lss~ss--~sleeia~~~~~~~w~Qly--~~~d~~~~~~ll~rAe~aG~~AlvvTVD 189 (203)
++.|.+.|.-++--++.. ..++++.+..+-+ ++-+= ...+.+...+.++++.++|+..+.+.-.
T Consensus 149 ~~~a~~~GaD~Ik~~~~~~~~~~~~i~~~~~~p-vv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~ 216 (235)
T cd00958 149 ARIGAELGADIVKTKYTGDAESFKEVVEGCPVP-VVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRN 216 (235)
T ss_pred HHHHHHHCCCEEEecCCCCHHHHHHHHhcCCCC-EEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechh
Confidence 777888887766554322 2344555544433 32111 1135666778899999999998877544
No 220
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=26.58 E-value=4.2e+02 Score=22.91 Aligned_cols=81 Identities=17% Similarity=0.078 Sum_probs=48.6
Q ss_pred EeccccchhccCchHHHHHHHHHHhcCCeE--EecCC---CCCCHHHHHh---hc---CCceeEEEeeeCCHHHHHHHHH
Q 028838 106 IIAPTALHKLANPEGEVATARAAASCNTIM--VLSFT---SSSSIEEVAA---SC---NAVRFYQLYVFKKRDIAATLVQ 174 (203)
Q Consensus 106 ~iaP~g~~~l~hp~gE~a~AraA~~~gi~~--~lss~---ss~sleeia~---~~---~~~~w~Qly~~~d~~~~~~ll~ 174 (203)
++.|+-- +-.+.++-..+++-..+.|+-- .+||. .+.+.||-.+ .. .+...+++- ..+-..+.++.+
T Consensus 8 ~~TPf~~-g~iD~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~~vi~gvg-~~~~~~ai~~a~ 85 (279)
T cd00953 8 VITPFTG-NKIDKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITDKVIFQVG-SLNLEESIELAR 85 (279)
T ss_pred eecCcCC-CCcCHHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcCCEEEEeC-cCCHHHHHHHHH
Confidence 3566533 3346666677777777777543 34442 3445554322 11 122234432 235678888999
Q ss_pred HHHHcCCcEEEEee
Q 028838 175 RAERNGFKALVLTA 188 (203)
Q Consensus 175 rAe~aG~~AlvvTV 188 (203)
.|+++|+++++++.
T Consensus 86 ~a~~~Gad~v~v~~ 99 (279)
T cd00953 86 AAKSFGIYAIASLP 99 (279)
T ss_pred HHHHcCCCEEEEeC
Confidence 99999999999875
No 221
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=26.38 E-value=1.6e+02 Score=25.84 Aligned_cols=31 Identities=6% Similarity=-0.026 Sum_probs=22.8
Q ss_pred CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEE
Q 028838 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVL 186 (203)
Q Consensus 154 ~~~w~Qly~~~d~~~~~~ll~rAe~aG~~Alvv 186 (203)
-|.|. .+..|.+.+.+++++++++|+++|++
T Consensus 169 ~Pv~v--Kl~~~~~~~~~~a~~~~~~Gadgi~~ 199 (299)
T cd02940 169 IPVIA--KLTPNITDIREIARAAKEGGADGVSA 199 (299)
T ss_pred CCeEE--ECCCCchhHHHHHHHHHHcCCCEEEE
Confidence 34443 33445667789999999999999984
No 222
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=26.34 E-value=2.5e+02 Score=24.36 Aligned_cols=67 Identities=10% Similarity=0.002 Sum_probs=45.1
Q ss_pred HHHHHHhcCCeEEecCCCCCCHHHHHhhcCCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecC
Q 028838 124 TARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADT 190 (203)
Q Consensus 124 ~AraA~~~gi~~~lss~ss~sleeia~~~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~ 190 (203)
++..-...|....+.+-.......+....++..++=+-..+-...+.+.++.|++.|++.|.+|=-.
T Consensus 148 ~~~~l~~ig~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~ 214 (281)
T COG1737 148 LAYKLMRIGLNVVALSDTHGQLMQLALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSA 214 (281)
T ss_pred HHHHHHHcCCceeEecchHHHHHHHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcCCC
Confidence 3444455666666654443333333333466566667777888888999999999999999999653
No 223
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=26.10 E-value=1.6e+02 Score=24.64 Aligned_cols=26 Identities=15% Similarity=0.344 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecCCC
Q 028838 167 DIAATLVQRAERNGFKALVLTADTPR 192 (203)
Q Consensus 167 ~~~~~ll~rAe~aG~~AlvvTVD~p~ 192 (203)
....++++++.++|..-.+.|||.+.
T Consensus 192 ~~~~~~v~~~~~~Gl~v~vwTVn~~~ 217 (237)
T cd08583 192 YVNDKLIEKLNKAGIYVYVYTINDLK 217 (237)
T ss_pred hcCHHHHHHHHHCCCEEEEEeCCCHH
Confidence 45678888888999999999998753
No 224
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=26.07 E-value=1.7e+02 Score=25.43 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=20.2
Q ss_pred eCCHHHHHHHHHHHHHcCCcEEEEe
Q 028838 163 FKKRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 163 ~~d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
..+.+...++.++++++|+++|.|+
T Consensus 165 ~~~~~~~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 165 SPNVTDITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred CCChhhHHHHHHHHHHcCCCEEEEE
Confidence 3355667889999999999999875
No 225
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=26.02 E-value=3.7e+02 Score=25.58 Aligned_cols=84 Identities=13% Similarity=0.054 Sum_probs=51.1
Q ss_pred eecCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHhh-------cCC-c-eeEEEeee-C
Q 028838 95 TILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAAS-------CNA-V-RFYQLYVF-K 164 (203)
Q Consensus 95 ~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~~-------~~~-~-~w~Qly~~-~ 164 (203)
++|| +..||+.+||+. +.. ...++.+..++|..=.+++.. .++|+|.+. .+. + .-+-|..+ .
T Consensus 13 ~~lg--iryPiiqgpMa~-GiS----s~eLVaAVs~AGgLG~lgag~-l~~e~l~~~I~~ir~~~~~~p~fGVNL~~~~~ 84 (444)
T TIGR02814 13 EDYG--VRYAYVAGAMAN-GIA----SAELVIAMGRAGILGFFGAGG-LPLEEVEQAIHRIQQALPGGPAYGVNLIHSPS 84 (444)
T ss_pred HHhC--CCCcEECccccC-CCC----CHHHHHHHHhCCceeeeCCCC-CCHHHHHHHHHHHHHhcCCCCceEEEecccCC
Confidence 4454 467999999962 222 346777788888777777543 356655432 232 4 44444443 3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE
Q 028838 165 KRDIAATLVQRAERNGFKALVL 186 (203)
Q Consensus 165 d~~~~~~ll~rAe~aG~~Alvv 186 (203)
+.....++++...+.|++.+..
T Consensus 85 ~~~~e~~~v~l~l~~~V~~vea 106 (444)
T TIGR02814 85 DPALEWGLVDLLLRHGVRIVEA 106 (444)
T ss_pred CcccHHHHHHHHHHcCCCEEEe
Confidence 4444456777778889876544
No 226
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=26.00 E-value=4.2e+02 Score=22.71 Aligned_cols=77 Identities=10% Similarity=0.091 Sum_probs=45.6
Q ss_pred cchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHhhcCCceeE--EEeeeC----------CHHHHHHHHHHHHH
Q 028838 111 ALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFY--QLYVFK----------KRDIAATLVQRAER 178 (203)
Q Consensus 111 g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~~~~~~~w~--Qly~~~----------d~~~~~~ll~rAe~ 178 (203)
||--+.||+.-..+++.+++.|+...+.|-.....+.+.+..+...++ ++.-.. +.+.+.+-|+++.+
T Consensus 133 GGEPll~~~~l~~l~~~~k~~g~~~~i~TnG~~~~~~~~~ll~~~d~~~isl~~~~~~~~~~~~g~~~~~vl~~i~~l~~ 212 (295)
T TIGR02494 133 GGEPLLQPEFALALLQACHERGIHTAVETSGFTPWETIEKVLPYVDLFLFDIKHLDDERHKEVTGVDNEPILENLEALAA 212 (295)
T ss_pred CcchhchHHHHHHHHHHHHHcCCcEeeeCCCCCCHHHHHHHHhhCCEEEEeeccCChHHHHHHhCCChHHHHHHHHHHHh
Confidence 444455776666788889999988877776655444444433322233 332221 23445566788888
Q ss_pred cCCcEEEEe
Q 028838 179 NGFKALVLT 187 (203)
Q Consensus 179 aG~~AlvvT 187 (203)
.|.+..+-+
T Consensus 213 ~~~~~~i~~ 221 (295)
T TIGR02494 213 AGKNVVIRI 221 (295)
T ss_pred CCCcEEEEe
Confidence 887655444
No 227
>COG3147 DedD Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.97 E-value=62 Score=27.97 Aligned_cols=41 Identities=29% Similarity=0.384 Sum_probs=35.3
Q ss_pred CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCC
Q 028838 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGR 195 (203)
Q Consensus 154 ~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p~~g~ 195 (203)
+-+-.||=-.++.+...+++.+...+||.|.+-.+ +|+-|.
T Consensus 150 ~a~~VQLgAl~n~dranel~~~Lr~~G~~ayi~~~-~p~qg~ 190 (226)
T COG3147 150 QAFVVQLGALKNADRANELVAKLRGAGYRAYIEPS-TPVQGD 190 (226)
T ss_pred cceeehhhhhhhHHHHHHHHHHHHhCCCceeeccc-CCCCCc
Confidence 44667888899999999999999999999999888 777664
No 228
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=25.65 E-value=2.1e+02 Score=26.15 Aligned_cols=68 Identities=18% Similarity=0.302 Sum_probs=39.3
Q ss_pred CchHHHHHHHHHHhcC---CeEEec-----CCC-CCCHHHHHhhc-----CCceeEEEee-------eCCHHHHHHHHHH
Q 028838 117 NPEGEVATARAAASCN---TIMVLS-----FTS-SSSIEEVAASC-----NAVRFYQLYV-------FKKRDIAATLVQR 175 (203)
Q Consensus 117 hp~gE~a~AraA~~~g---i~~~ls-----s~s-s~sleeia~~~-----~~~~w~Qly~-------~~d~~~~~~ll~r 175 (203)
+|.|+..-.+.|-+.| +-.+.. ..+ +.+.+|+.+.. -+. ++|+ ..+.+...+.+++
T Consensus 11 ~pag~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gk---k~~V~~N~~~~~~~~~~~~~~l~~ 87 (347)
T COG0826 11 APAGNLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGK---KVYVAVNTLLHNDELETLERYLDR 87 (347)
T ss_pred cCCCCHHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCC---eEEEEeccccccchhhHHHHHHHH
Confidence 3445555556665555 222211 122 46777776543 143 3343 2345556889999
Q ss_pred HHHcCCcEEEEe
Q 028838 176 AERNGFKALVLT 187 (203)
Q Consensus 176 Ae~aG~~AlvvT 187 (203)
+.+.|++||++-
T Consensus 88 l~e~GvDaviv~ 99 (347)
T COG0826 88 LVELGVDAVIVA 99 (347)
T ss_pred HHHcCCCEEEEc
Confidence 999999999873
No 229
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=25.59 E-value=4.4e+02 Score=22.78 Aligned_cols=85 Identities=15% Similarity=0.073 Sum_probs=53.8
Q ss_pred cCchHHHHHHHHHHhcCCeEEecCCCCCCHHH---HHhhcCCceeEEEee----------eCCHHHHHHHHHHHHHcCCc
Q 028838 116 ANPEGEVATARAAASCNTIMVLSFTSSSSIEE---VAASCNAVRFYQLYV----------FKKRDIAATLVQRAERNGFK 182 (203)
Q Consensus 116 ~hp~gE~a~AraA~~~gi~~~lss~ss~slee---ia~~~~~~~w~Qly~----------~~d~~~~~~ll~rAe~aG~~ 182 (203)
.+++.-..++++|++.|+..++-|....+-+. +.+..+. .++=|.- ..+.+.+.+-++.+.+.|..
T Consensus 96 ~q~e~~~~~~~~ake~Gl~~~l~TnG~~~~~~~~~l~~~~D~-v~~DlK~~~~~~y~~~tg~~~~~vl~~~~~l~~~g~~ 174 (260)
T COG1180 96 LQAEFALDLLRAAKERGLHVALDTNGFLPPEALEELLPLLDA-VLLDLKAFDDELYRKLTGADNEPVLENLELLADLGVH 174 (260)
T ss_pred hhHHHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHhhcCe-EEEeeccCChHHHHHHhCCCcHHHHHHHHHHHcCCCe
Confidence 34555689999999999999999876655443 3333221 1222222 22345667777888888887
Q ss_pred EEEEeecCCCCCCchhhhh
Q 028838 183 ALVLTADTPRLGRREADIK 201 (203)
Q Consensus 183 AlvvTVD~p~~g~Re~d~r 201 (203)
..+-|+=.|.....+.+++
T Consensus 175 ve~r~lviPg~~d~~e~i~ 193 (260)
T COG1180 175 VEIRTLVIPGYNDDEEEIR 193 (260)
T ss_pred EEEEEEEECCCCCCHHHHH
Confidence 7777766666555555544
No 230
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=25.55 E-value=5.1e+02 Score=23.45 Aligned_cols=30 Identities=23% Similarity=0.193 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEeecCCCCC
Q 028838 164 KKRDIAATLVQRAERNGFKALVLTADTPRLG 194 (203)
Q Consensus 164 ~d~~~~~~ll~rAe~aG~~AlvvTVD~p~~g 194 (203)
.|.+...++++.++++|++.|. =.|+....
T Consensus 139 ~~~~~l~~~~~~~~~~Ga~~i~-l~DT~G~~ 168 (365)
T TIGR02660 139 ADPDFLVELAEVAAEAGADRFR-FADTVGIL 168 (365)
T ss_pred CCHHHHHHHHHHHHHcCcCEEE-EcccCCCC
Confidence 4789999999999999987643 45665443
No 231
>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism]
Probab=25.37 E-value=1.2e+02 Score=30.01 Aligned_cols=44 Identities=20% Similarity=0.283 Sum_probs=38.0
Q ss_pred eeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCchhhhh
Q 028838 156 RFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIK 201 (203)
Q Consensus 156 ~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p~~g~Re~d~r 201 (203)
-|.-.|+.-+++.+.++++.|++-|+.- +-+|-...|.|..|.+
T Consensus 298 sWea~Yfd~t~e~ile~vk~akk~gvE~--FvlDDGwfg~rndd~~ 341 (687)
T COG3345 298 SWEAYYFDFTEEEILENVKEAKKFGVEL--FVLDDGWFGGRNDDLK 341 (687)
T ss_pred ceeeeeecCCHHHHHHHHHHHhhcCeEE--EEEccccccccCcchh
Confidence 5999999999999999999999999654 4467789999998876
No 232
>PRK10864 putative methyltransferase; Provisional
Probab=25.32 E-value=1.7e+02 Score=26.86 Aligned_cols=57 Identities=9% Similarity=0.110 Sum_probs=41.3
Q ss_pred cCCeEEecCCCCCCHHHHHhhcC-CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 028838 131 CNTIMVLSFTSSSSIEEVAASCN-AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 131 ~gi~~~lss~ss~sleeia~~~~-~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
.||.+.+......+++++.+..+ ...++=|.-..|..-+-.+++-|+..|+++|+++
T Consensus 173 qGV~A~v~~~~~~~l~~~l~~~~~~~~vlvLd~I~DP~NlGaIiRTA~afGv~~Vil~ 230 (346)
T PRK10864 173 GGVCFLIKKRNGTDVQQWLAQAGAQDCVLALEDVGNPHNLGGIMRSCAHFGVKGVVVQ 230 (346)
T ss_pred CeEEEEEeCCCCCCHHHHhhccccCCeEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEC
Confidence 56666676555567888655432 3344445556788888999999999999999996
No 233
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=25.22 E-value=3.9e+02 Score=22.05 Aligned_cols=63 Identities=14% Similarity=0.107 Sum_probs=44.7
Q ss_pred HHHHHHHHhcCCeEEecCCCCCCHHHHHhhc--CCceeEEEeeeCC--HHHHHHHHHHHHHcCCcEEE
Q 028838 122 VATARAAASCNTIMVLSFTSSSSIEEVAASC--NAVRFYQLYVFKK--RDIAATLVQRAERNGFKALV 185 (203)
Q Consensus 122 ~a~AraA~~~gi~~~lss~ss~sleeia~~~--~~~~w~Qly~~~d--~~~~~~ll~rAe~aG~~Alv 185 (203)
..+++-.+..++|.++ ..+..+.++..... +...++|+-+.+. .....++.+.|++.|.+..+
T Consensus 135 ~~~~~L~~~~~~pIa~-dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~ 201 (229)
T cd00308 135 EGYAALRRRTGIPIAA-DESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAFGIRVMV 201 (229)
T ss_pred HHHHHHHhhCCCCEEe-CCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEee
Confidence 4456666678899887 55666788875543 4578899987665 34456888999999986544
No 234
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=25.17 E-value=70 Score=28.10 Aligned_cols=46 Identities=26% Similarity=0.347 Sum_probs=25.1
Q ss_pred CceeEEEeeeCCHH----HHHHHHHHHHHc---CCcEEEEeecCCCCCCchhh
Q 028838 154 AVRFYQLYVFKKRD----IAATLVQRAERN---GFKALVLTADTPRLGRREAD 199 (203)
Q Consensus 154 ~~~w~Qly~~~d~~----~~~~ll~rAe~a---G~~AlvvTVD~p~~g~Re~d 199 (203)
+..|+-|-+-.|.. .+.+.|++|+.. |+..+-++.|.+...+|-.+
T Consensus 90 ~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~ 142 (248)
T cd04728 90 GTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLED 142 (248)
T ss_pred CCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH
Confidence 33455555544432 234556666666 77666666666665555433
No 235
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=25.11 E-value=4.3e+02 Score=22.48 Aligned_cols=66 Identities=20% Similarity=0.115 Sum_probs=37.0
Q ss_pred HHHHHHhcCCeEEecCCCCCCHHHHHhhcC-CceeEEEeeeCCHH---------------HHHHHHHHHHHcCCcEEEEe
Q 028838 124 TARAAASCNTIMVLSFTSSSSIEEVAASCN-AVRFYQLYVFKKRD---------------IAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 124 ~AraA~~~gi~~~lss~ss~sleeia~~~~-~~~w~Qly~~~d~~---------------~~~~ll~rAe~aG~~AlvvT 187 (203)
..+...+.+....+..+.....++|..+.. +..|+.++.+.+.. ...+.++.|++.|+..-+-.
T Consensus 51 ~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 130 (259)
T cd07939 51 AIRAIVALGLPARLIVWCRAVKEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGA 130 (259)
T ss_pred HHHHHHhcCCCCEEEEeccCCHHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEee
Confidence 344444433333344444445667755543 56777887765432 44577888888887644333
Q ss_pred ec
Q 028838 188 AD 189 (203)
Q Consensus 188 VD 189 (203)
.|
T Consensus 131 ~~ 132 (259)
T cd07939 131 ED 132 (259)
T ss_pred cc
Confidence 33
No 236
>PF13223 DUF4031: Protein of unknown function (DUF4031)
Probab=24.90 E-value=48 Score=24.29 Aligned_cols=42 Identities=19% Similarity=0.196 Sum_probs=29.3
Q ss_pred CCCHHHHHhhc---C-CceeEEEeeeCC-HHHHHHHHHHHHHcCCcE
Q 028838 142 SSSIEEVAASC---N-AVRFYQLYVFKK-RDIAATLVQRAERNGFKA 183 (203)
Q Consensus 142 s~sleeia~~~---~-~~~w~Qly~~~d-~~~~~~ll~rAe~aG~~A 183 (203)
+-+++|+-+-+ + ..+|||---..| -++..++-++|.++|+..
T Consensus 20 aDt~~ELHafA~riGv~rr~fq~~~~~~HYDi~~~~r~~Av~~GA~~ 66 (83)
T PF13223_consen 20 ADTLDELHAFAARIGVPRRWFQRGASGDHYDIPESRRAAAVAAGAVE 66 (83)
T ss_pred cCCHHHHHHHHHHcCCCHHHHcCCCCCCCccCCHHHHHHHHHcCCEE
Confidence 34488775533 4 568999844444 378888999999999855
No 237
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=24.78 E-value=1.7e+02 Score=27.08 Aligned_cols=23 Identities=22% Similarity=0.301 Sum_probs=17.9
Q ss_pred CchHHHHHHHHHHhcCCeEEecC
Q 028838 117 NPEGEVATARAAASCNTIMVLSF 139 (203)
Q Consensus 117 hp~gE~a~AraA~~~gi~~~lss 139 (203)
+.+.-.++.+||++.+.|.++..
T Consensus 36 n~e~~~Avi~AAEe~~sPvIlq~ 58 (357)
T TIGR01520 36 SSSTINAALEAAADVKSPIIIQF 58 (357)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEc
Confidence 34455888999999999988864
No 238
>PF09872 DUF2099: Uncharacterized protein conserved in archaea (DUF2099); InterPro: IPR009181 The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=24.76 E-value=1.2e+02 Score=26.75 Aligned_cols=56 Identities=16% Similarity=0.225 Sum_probs=35.7
Q ss_pred CCCCCCHHHHHhhc---CCceeEEEeeeCCHHHH--HHHHHHHHHcCCcEEEEeecCCCCCCchhh
Q 028838 139 FTSSSSIEEVAASC---NAVRFYQLYVFKKRDIA--ATLVQRAERNGFKALVLTADTPRLGRREAD 199 (203)
Q Consensus 139 s~ss~sleeia~~~---~~~~w~Qly~~~d~~~~--~~ll~rAe~aG~~AlvvTVD~p~~g~Re~d 199 (203)
-.++.|++||-+.- +++ -+.+....+ .+=+++|.+.||+-|.|||=.+....+-|+
T Consensus 121 Lv~T~PI~evi~~Ie~~ggi-----VLd~~tA~IDq~~Gv~kAie~Gyk~IaVTV~~~~~A~~iRe 181 (258)
T PF09872_consen 121 LVSTTPIPEVIERIEEKGGI-----VLDPETARIDQVEGVKKAIEMGYKRIAVTVADAEDAKKIRE 181 (258)
T ss_pred eeeccchHHHHHHHHhcCCE-----EeCCccccccHHHHHHHHHHcCCceEEEEecCHHHHHHHHH
Confidence 46788999987754 232 222221222 234789999999999999977655444443
No 239
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=24.74 E-value=1.8e+02 Score=24.96 Aligned_cols=25 Identities=8% Similarity=0.194 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHcCCcEEEEeecCCC
Q 028838 168 IAATLVQRAERNGFKALVLTADTPR 192 (203)
Q Consensus 168 ~~~~ll~rAe~aG~~AlvvTVD~p~ 192 (203)
.+.++++++.++|.+..+.|||.+.
T Consensus 219 ~~~~~v~~~~~~G~~v~vWTVNd~~ 243 (264)
T cd08575 219 WWPNLFDHLRKRGIQVYLWVLNDEE 243 (264)
T ss_pred cCHHHHHHHHhcCCcEEEEEECCHH
Confidence 4678999999999999999999754
No 240
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=24.22 E-value=2e+02 Score=24.02 Aligned_cols=15 Identities=7% Similarity=-0.015 Sum_probs=9.5
Q ss_pred CCCHHHHHHHHHHhC
Q 028838 35 PVNLNEFQELARLAL 49 (203)
Q Consensus 35 ~~~~~d~~~~Ar~~L 49 (203)
..+.+++.+.++.-+
T Consensus 18 ~~~~~~~~~~~~a~~ 32 (206)
T PRK09140 18 GITPDEALAHVGALI 32 (206)
T ss_pred CCCHHHHHHHHHHHH
Confidence 356777776666554
No 241
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=24.15 E-value=3.2e+02 Score=23.91 Aligned_cols=61 Identities=10% Similarity=0.067 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCCeEEecCCCC---------CCHHHHHhhcCCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEe
Q 028838 121 EVATARAAASCNTIMVLSFTSS---------SSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 121 E~a~AraA~~~gi~~~lss~ss---------~sleeia~~~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvT 187 (203)
-..+++.+.+.|...+.=+... .-++++.+..+.+.++.. . .+.+..++|+++|+++|+|+
T Consensus 131 ~~~~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~~~pvivK~-----v-~s~~~a~~a~~~G~d~I~v~ 200 (299)
T cd02809 131 TEDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQWKGPLILKG-----I-LTPEDALRAVDAGADGIVVS 200 (299)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhcCCCEEEee-----c-CCHHHHHHHHHCCCCEEEEc
Confidence 3455666677776554433321 234566666555533321 1 33466889999999999997
No 242
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=23.92 E-value=2.9e+02 Score=20.16 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=26.1
Q ss_pred eEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeec
Q 028838 157 FYQLYVFKKRDIAATLVQRAERNGFKALVLTAD 189 (203)
Q Consensus 157 w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD 189 (203)
.+=+-..+.-..+.+.+++|++.|++.|++|=+
T Consensus 51 vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~ 83 (128)
T cd05014 51 VIAISNSGETDELLNLLPHLKRRGAPIIAITGN 83 (128)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 333455666677888999999999999999974
No 243
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=23.77 E-value=85 Score=28.38 Aligned_cols=99 Identities=23% Similarity=0.211 Sum_probs=55.9
Q ss_pred CcceeecCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCC----------------------------
Q 028838 91 DLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSS---------------------------- 142 (203)
Q Consensus 91 dtst~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss---------------------------- 142 (203)
+++++++|.++.-||++|. +....+++...+..+..+|-. .++|..-
T Consensus 1 ~l~~~~~Gl~f~NPl~lAa----G~~~~~~~~~~~~~~~g~G~i-~~ktvt~~pq~Gnp~PR~~~l~~~~~~iN~mG~~N 75 (310)
T COG0167 1 DLSTEILGLKFPNPLGLAA----GFDGKNGEELDALAALGFGAI-VTKTVTPEPQEGNPKPRLFRLPEDEGLINRMGFNN 75 (310)
T ss_pred CCceeecceecCCCCeEcc----cCCccCHHHHHHHHhcCCceE-EecCCCCcCCCCCCCCeEEEecCcccHHHhcCCCc
Confidence 4678899999999999975 321135655544444444433 2333211
Q ss_pred CCHHHHHh----hcC-C-ceeEEEeeeC---CHHHHHHHHHHHHHcC-CcEEEEeecCCCCC
Q 028838 143 SSIEEVAA----SCN-A-VRFYQLYVFK---KRDIAATLVQRAERNG-FKALVLTADTPRLG 194 (203)
Q Consensus 143 ~sleeia~----~~~-~-~~w~Qly~~~---d~~~~~~ll~rAe~aG-~~AlvvTVD~p~~g 194 (203)
..++.+.+ ... . +...-+.... ..+...+.+...++++ ++++.|.|-+|-..
T Consensus 76 ~G~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNiScPnt~ 137 (310)
T COG0167 76 PGADAFLEELKLAKYEGKPIGVNIGKNKGGPSEEAWADYARLLEEAGDADAIELNISCPNTP 137 (310)
T ss_pred hhHHHHHHHHHhhhhccCCcCcceEEecCCCcHHHHHHHHHHHHhcCCCCEEEEEccCCCCC
Confidence 11222222 111 0 1111133332 3566677888888888 89999999998743
No 244
>PF07338 DUF1471: Protein of unknown function (DUF1471); InterPro: IPR010854 This entry consists of several hypothetical Enterobacterial proteins of around 90 residues in length. Some of the proteins are annotated as ydgH precursors and contain two copies of this region, one at the N terminus and the other at the C terminus. The function of this family is unknown.; PDB: 2NOC_A 2JNA_B 4EVU_B.
Probab=23.74 E-value=1.3e+02 Score=19.93 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHcCCcEEEEe
Q 028838 166 RDIAATLVQRAERNGFKALVLT 187 (203)
Q Consensus 166 ~~~~~~ll~rAe~aG~~AlvvT 187 (203)
.+...++-++|.+.|++...||
T Consensus 18 ~d~~~~la~kAd~~GA~~y~I~ 39 (56)
T PF07338_consen 18 DDAEEALAKKADEKGAKYYRIT 39 (56)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEE
Confidence 4666788899999999887765
No 245
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=23.61 E-value=1.2e+02 Score=25.80 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecCCC
Q 028838 167 DIAATLVQRAERNGFKALVLTADTPR 192 (203)
Q Consensus 167 ~~~~~ll~rAe~aG~~AlvvTVD~p~ 192 (203)
....++++++.++|.+..+.|||.+.
T Consensus 196 ~~~~~~v~~~~~~g~~v~~WTvn~~~ 221 (249)
T PRK09454 196 LLDEARVAALKAAGLRILVYTVNDPA 221 (249)
T ss_pred cCCHHHHHHHHHCCCEEEEEeCCCHH
Confidence 34678999999999999999999754
No 246
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=23.51 E-value=1.2e+02 Score=22.22 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=24.5
Q ss_pred EeeeCCHHHHHHHHHHHHHcCCcEEEEeec
Q 028838 160 LYVFKKRDIAATLVQRAERNGFKALVLTAD 189 (203)
Q Consensus 160 ly~~~d~~~~~~ll~rAe~aG~~AlvvTVD 189 (203)
+-..+....+.+.++.|++.|++.|++|=+
T Consensus 53 iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~ 82 (126)
T cd05008 53 ISQSGETADTLAALRLAKEKGAKTVAITNV 82 (126)
T ss_pred EeCCcCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 455566667888999999999999999965
No 247
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=23.45 E-value=5.2e+02 Score=22.81 Aligned_cols=72 Identities=8% Similarity=-0.032 Sum_probs=41.6
Q ss_pred cCchHHHHHHHHHHhcCCeE--EecC---CCCCCHHHHHh-------hcCC--ceeEEEeeeCCHHHHHHHHHHHHHcCC
Q 028838 116 ANPEGEVATARAAASCNTIM--VLSF---TSSSSIEEVAA-------SCNA--VRFYQLYVFKKRDIAATLVQRAERNGF 181 (203)
Q Consensus 116 ~hp~gE~a~AraA~~~gi~~--~lss---~ss~sleeia~-------~~~~--~~w~Qly~~~d~~~~~~ll~rAe~aG~ 181 (203)
.+.++-..+.+-..+.|+-- +.|| +.+.+.||-.+ ..++ +...++- ..+-+.+.++.+.|+++|+
T Consensus 26 iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~-~~~t~~ai~~a~~A~~~Ga 104 (309)
T cd00952 26 VDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGAT-TLNTRDTIARTRALLDLGA 104 (309)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEec-cCCHHHHHHHHHHHHHhCC
Confidence 35555566666666666543 3344 23445554322 2232 2233332 1356778889999999999
Q ss_pred cEEEEee
Q 028838 182 KALVLTA 188 (203)
Q Consensus 182 ~AlvvTV 188 (203)
++++++-
T Consensus 105 d~vlv~~ 111 (309)
T cd00952 105 DGTMLGR 111 (309)
T ss_pred CEEEECC
Confidence 9988875
No 248
>cd08581 GDPD_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=23.26 E-value=2e+02 Score=24.06 Aligned_cols=23 Identities=9% Similarity=0.037 Sum_probs=19.3
Q ss_pred HHHHHHHHcCCcEEEEeecCCCC
Q 028838 171 TLVQRAERNGFKALVLTADTPRL 193 (203)
Q Consensus 171 ~ll~rAe~aG~~AlvvTVD~p~~ 193 (203)
+.++++.++|.+..+.|||.+..
T Consensus 190 ~~v~~~~~~G~~v~vWTVn~~~~ 212 (229)
T cd08581 190 PDTGDLWAGTWKWVIYEVNEPAE 212 (229)
T ss_pred hhhHHHHhCCceEEEEEcCCHHH
Confidence 45788999999999999998653
No 249
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=22.74 E-value=2.1e+02 Score=24.70 Aligned_cols=79 Identities=19% Similarity=0.234 Sum_probs=45.1
Q ss_pred CcceEeccccchhccCchHHHHHHHHHHhcCCeEE-e--cCCC--------CCC---HHHHHh----hcCCceeEEEeee
Q 028838 102 SAPIIIAPTALHKLANPEGEVATARAAASCNTIMV-L--SFTS--------SSS---IEEVAA----SCNAVRFYQLYVF 163 (203)
Q Consensus 102 s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~-l--ss~s--------s~s---leeia~----~~~~~~w~Qly~~ 163 (203)
..|++++=.|. .++.-...|+.++++|.-++ + |+-. ..+ +.+|.+ ..+-+.|.-| .
T Consensus 89 ~~p~ivsi~g~----~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl--~ 162 (296)
T cd04740 89 GTPVIASIAGS----TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKL--T 162 (296)
T ss_pred CCcEEEEEecC----CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEe--C
Confidence 45777653332 34555777788888776444 2 2210 011 223333 2233555544 3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEE
Q 028838 164 KKRDIAATLVQRAERNGFKALVL 186 (203)
Q Consensus 164 ~d~~~~~~ll~rAe~aG~~Alvv 186 (203)
.+.+...+++++++++|+++|.+
T Consensus 163 ~~~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 163 PNVTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred CCchhHHHHHHHHHHcCCCEEEE
Confidence 34456778899999999999876
No 250
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=22.36 E-value=1.9e+02 Score=24.30 Aligned_cols=36 Identities=11% Similarity=0.013 Sum_probs=28.0
Q ss_pred CCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEee
Q 028838 153 NAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTA 188 (203)
Q Consensus 153 ~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTV 188 (203)
++...+=+-..+.-..+.+.++.|++.|++.|.+|=
T Consensus 47 ~~d~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~ 82 (268)
T TIGR00393 47 PNDVVLMISYSGESLELLNLIPHLKRLSHKIIAFTG 82 (268)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEEC
Confidence 343444456666778888999999999999999995
No 251
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=22.35 E-value=95 Score=26.65 Aligned_cols=69 Identities=9% Similarity=0.136 Sum_probs=46.3
Q ss_pred cCchH---HHHHHHHHHhcCCeEEecCCCCCCHHHHHhhcC------------C----------------------ceeE
Q 028838 116 ANPEG---EVATARAAASCNTIMVLSFTSSSSIEEVAASCN------------A----------------------VRFY 158 (203)
Q Consensus 116 ~hp~g---E~a~AraA~~~gi~~~lss~ss~sleeia~~~~------------~----------------------~~w~ 158 (203)
+|.+. -..+++-.++.|+...+.--..+++|++....+ | ..|.
T Consensus 93 fH~E~~q~~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~~~D~vLvMtVePGFGGQkFme~mm~KV~~lR~kyp~l~i 172 (224)
T KOG3111|consen 93 FHYEATQKPAELVEKIREKGMKVGLALKPGTPVEDLEPLAEHVDMVLVMTVEPGFGGQKFMEDMMPKVEWLREKYPNLDI 172 (224)
T ss_pred EEEeeccCHHHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhccccEEEEEEecCCCchhhhHHHHHHHHHHHHHhCCCceE
Confidence 46543 367888899999999998777777777654321 0 1244
Q ss_pred EEeeeCCHHHHHHHHHHHHHcCCcEEEEee
Q 028838 159 QLYVFKKRDIAATLVQRAERNGFKALVLTA 188 (203)
Q Consensus 159 Qly~~~d~~~~~~ll~rAe~aG~~AlvvTV 188 (203)
|+ |-++..+-|.++.+||+.+||..-
T Consensus 173 ev----DGGv~~~ti~~~a~AGAN~iVaGs 198 (224)
T KOG3111|consen 173 EV----DGGVGPSTIDKAAEAGANMIVAGS 198 (224)
T ss_pred Ee----cCCcCcchHHHHHHcCCCEEEecc
Confidence 44 666666777777788887777653
No 252
>COG1591 Holliday junction resolvase - archaeal type [DNA replication, recombination, and repair]
Probab=22.16 E-value=4e+02 Score=21.34 Aligned_cols=75 Identities=20% Similarity=0.236 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHhcCCeEEec--CC-CCCCHHHHHhhcCCc-eeEE--------EeeeCCHHHHHHHHHHHHHcCCcEEEE
Q 028838 119 EGEVATARAAASCNTIMVLS--FT-SSSSIEEVAASCNAV-RFYQ--------LYVFKKRDIAATLVQRAERNGFKALVL 186 (203)
Q Consensus 119 ~gE~a~AraA~~~gi~~~ls--s~-ss~sleeia~~~~~~-~w~Q--------ly~~~d~~~~~~ll~rAe~aG~~Alvv 186 (203)
..|..+++.-.+.|-..+=+ |. |..++-||.+-.++. .-+- ||+ |++.++.|+.-|+..|.++++
T Consensus 8 ~~EReLv~~L~e~GfAvvR~paSG~sk~p~pDivA~~g~~~l~iE~K~~~~~kiYl--~~e~ve~L~~FA~~fGg~p~i- 84 (137)
T COG1591 8 RFERELVRILWERGFAVVRAPASGGSKRPLPDIVAGNGGVYLAIEVKSRRETKIYL--DKEQVEKLVEFARRFGGEPYI- 84 (137)
T ss_pred hHHHHHHHHHHhcCceEEEcccCCCCCCCCCCEEecCCCEEEEEEEEeccCCcEEE--cHHHHHHHHHHHHHcCCceEE-
Confidence 57899999999999988877 54 455677887665432 2222 233 789999999999999988753
Q ss_pred eecCCCCCCc
Q 028838 187 TADTPRLGRR 196 (203)
Q Consensus 187 TVD~p~~g~R 196 (203)
.|=-+..+||
T Consensus 85 avKf~~~~wr 94 (137)
T COG1591 85 AVKFPGVGWR 94 (137)
T ss_pred EEEeCCCceE
Confidence 3333333443
No 253
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=22.02 E-value=85 Score=22.09 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=16.2
Q ss_pred HHHHHHHHHHcCCcEEEEee
Q 028838 169 AATLVQRAERNGFKALVLTA 188 (203)
Q Consensus 169 ~~~ll~rAe~aG~~AlvvTV 188 (203)
..+.++.|.++|+++++|-=
T Consensus 46 ~~~k~~~a~~~GA~gvIi~~ 65 (101)
T PF02225_consen 46 FDDKVRNAQKAGAKGVIIYN 65 (101)
T ss_dssp HHHHHHHHHHTTESEEEEE-
T ss_pred HHHHHHHHHHcCCEEEEEEe
Confidence 36778999999999988876
No 254
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.80 E-value=2.2e+02 Score=24.41 Aligned_cols=126 Identities=17% Similarity=0.209 Sum_probs=60.2
Q ss_pred hHHHHHhhhhcccCCCCCCCCCCCHHHHHHHHHHhCChhhhhhhcCCccc-hhhHHH--HHHHhhccc--c---cccccc
Q 028838 14 GIDLLEKLINVHVCRFQMAAEPVNLNEFQELARLALPKMYYDFYAGGAED-EHTLKE--NVEAFHRIT--F---RPRILV 85 (203)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~Ar~~Lp~~~~~Y~~gGa~d-e~T~~~--N~~af~~i~--L---~pRvL~ 85 (203)
+.++++++..+.+-++ -+..+.++....++.-+ .||-.- |.|++. ..++++++. + .|+++.
T Consensus 5 ~~~~~~~l~~~~vi~V---vr~~~~~~a~~~~~al~--------~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~v 73 (222)
T PRK07114 5 RIAVLTAMKATGMVPV---FYHADVEVAKKVIKACY--------DGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMIL 73 (222)
T ss_pred HHHHHHHHHhCCEEEE---EEcCCHHHHHHHHHHHH--------HCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEE
Confidence 3456666664444332 23457777766666544 344333 555532 222222221 0 245555
Q ss_pred CCCCCCcceee-cCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHhhcC-CceeEEEee
Q 028838 86 DVSRIDLSTTI-LDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCN-AVRFYQLYV 162 (203)
Q Consensus 86 dv~~~dtst~l-~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~~~~-~~~w~Qly~ 162 (203)
+...+=+.-++ -=...-.-|+++| .-+..+.+.|.+.|++++=|-++ .-||..+.. |-.++.+|+
T Consensus 74 GaGTVl~~e~a~~a~~aGA~FiVsP---------~~~~~v~~~~~~~~i~~iPG~~T---psEi~~A~~~Ga~~vKlFP 140 (222)
T PRK07114 74 GVGSIVDAATAALYIQLGANFIVTP---------LFNPDIAKVCNRRKVPYSPGCGS---LSEIGYAEELGCEIVKLFP 140 (222)
T ss_pred eeEeCcCHHHHHHHHHcCCCEEECC---------CCCHHHHHHHHHcCCCEeCCCCC---HHHHHHHHHCCCCEEEECc
Confidence 54443222111 1123334455555 23345667777777777766554 455555442 434445554
No 255
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=21.78 E-value=1.6e+02 Score=27.20 Aligned_cols=51 Identities=16% Similarity=0.160 Sum_probs=36.1
Q ss_pred CCCCCHHHHHhh---------cCCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCC
Q 028838 140 TSSSSIEEVAAS---------CNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTP 191 (203)
Q Consensus 140 ~ss~sleeia~~---------~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p 191 (203)
+..+|+||+.=- .+..-=++++-.+ ++.+...+.-.+.||.+..|++|++-
T Consensus 114 y~PyP~EEv~lDy~vlg~~~~~~e~v~Vll~Atr-kE~v~~ri~a~~~AGl~~~vlDV~~f 173 (354)
T COG4972 114 YIPYPLEEVNLDYQVLGPSANEPEKVQVLLVATR-KEVVESRIDAFELAGLEPKVLDVESF 173 (354)
T ss_pred cCCCchhhcccceEEeccccCCCccEEEEEEEee-hhhhHHHHHHHHHcCCCceEEehHHH
Confidence 345677877311 1212334566655 78889999999999999999999864
No 256
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=21.74 E-value=76 Score=28.97 Aligned_cols=48 Identities=21% Similarity=0.314 Sum_probs=37.5
Q ss_pred CCceeEEEeeeCCHHH----HHHHHHHHHHc---CCcEEEEeecCCCCCCchhhh
Q 028838 153 NAVRFYQLYVFKKRDI----AATLVQRAERN---GFKALVLTADTPRLGRREADI 200 (203)
Q Consensus 153 ~~~~w~Qly~~~d~~~----~~~ll~rAe~a---G~~AlvvTVD~p~~g~Re~d~ 200 (203)
.+..|+-|-+-.|+.. +.+.+++|+.. |+..+.++.|.|...+|-.++
T Consensus 163 ~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~ 217 (326)
T PRK11840 163 GGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDA 217 (326)
T ss_pred cCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhc
Confidence 4567998888665433 46788999998 999999999999887776554
No 257
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=21.63 E-value=2.6e+02 Score=24.02 Aligned_cols=28 Identities=14% Similarity=0.045 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeecCCCCC
Q 028838 165 KRDIAATLVQRAERNGFKALVLTADTPRLG 194 (203)
Q Consensus 165 d~~~~~~ll~rAe~aG~~AlvvTVD~p~~g 194 (203)
+...+.++.++++++|+.+|.| |.-..|
T Consensus 146 ~~~~~~~~a~~l~~aGad~i~V--d~~~~g 173 (231)
T TIGR00736 146 IPLDELIDALNLVDDGFDGIHV--DAMYPG 173 (231)
T ss_pred CcchHHHHHHHHHHcCCCEEEE--eeCCCC
Confidence 3445678889999999999855 554444
No 258
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.
Probab=21.61 E-value=2.4e+02 Score=24.23 Aligned_cols=25 Identities=12% Similarity=0.240 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHcCCcEEEEee--cCCC
Q 028838 168 IAATLVQRAERNGFKALVLTA--DTPR 192 (203)
Q Consensus 168 ~~~~ll~rAe~aG~~AlvvTV--D~p~ 192 (203)
.+.++++++.++|.+-.+.|| |.+.
T Consensus 246 ~~~~~v~~~~~~Gl~v~~wTv~~n~~~ 272 (290)
T cd08607 246 KDPSQIELAKSLGLVVFCWGDDLNDPE 272 (290)
T ss_pred cChHHHHHHHHcCCEEEEECCCCCCHH
Confidence 356889999999999999999 7643
No 259
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=21.51 E-value=88 Score=25.42 Aligned_cols=28 Identities=18% Similarity=0.334 Sum_probs=13.8
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEeecCC
Q 028838 164 KKRDIAATLVQRAERNGFKALVLTADTP 191 (203)
Q Consensus 164 ~d~~~~~~ll~rAe~aG~~AlvvTVD~p 191 (203)
.+.+...+++++++++||+..++-|.++
T Consensus 103 ~~~~~~~~~~~~~k~~GY~v~l~~v~~~ 130 (199)
T PF06414_consen 103 SNPSKLRKLIREAKAAGYKVELYYVAVP 130 (199)
T ss_dssp TSSHHHHHHHHHHHCTT-EEEEEEE---
T ss_pred CChhHHHHHHHHHHcCCceEEEEEEECC
Confidence 3445555566666666666555555543
No 260
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=21.48 E-value=1.5e+02 Score=24.43 Aligned_cols=29 Identities=14% Similarity=0.156 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeecCCCCC
Q 028838 166 RDIAATLVQRAERNGFKALVLTADTPRLG 194 (203)
Q Consensus 166 ~~~~~~ll~rAe~aG~~AlvvTVD~p~~g 194 (203)
..+++..+++|+..|+.+++|-=|.+..+
T Consensus 94 ~~Lvr~~le~a~~~G~~~v~vlGdp~YY~ 122 (171)
T COG3153 94 SALVREGLEALRLAGASAVVVLGDPTYYS 122 (171)
T ss_pred HHHHHHHHHHHHHCCCCEEEEecCccccc
Confidence 57788889999999999999999988774
No 261
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=21.47 E-value=1.5e+02 Score=26.34 Aligned_cols=44 Identities=9% Similarity=0.027 Sum_probs=31.8
Q ss_pred cccchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHhhc
Q 028838 109 PTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASC 152 (203)
Q Consensus 109 P~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~~~ 152 (203)
|-+++++.-.+|=.-++++.++.|++.+.=-+....+|.+++..
T Consensus 58 p~sFqG~G~eeGL~~L~~vk~~~GlpvvTeV~~~~~~~~v~~~~ 101 (264)
T PRK05198 58 IHSFRGPGLEEGLKILQEVKETFGVPVLTDVHEPEQAAPVAEVV 101 (264)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhhC
Confidence 45666664357888899999999999887666666666666653
No 262
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=21.32 E-value=5.5e+02 Score=22.33 Aligned_cols=63 Identities=17% Similarity=0.081 Sum_probs=46.7
Q ss_pred HHHHHHHHhcCCeEEecCCCCCCHHHHHhhc--CCceeEEEeeeCC--HHHHHHHHHHHHHcCCcEEE
Q 028838 122 VATARAAASCNTIMVLSFTSSSSIEEVAASC--NAVRFYQLYVFKK--RDIAATLVQRAERNGFKALV 185 (203)
Q Consensus 122 ~a~AraA~~~gi~~~lss~ss~sleeia~~~--~~~~w~Qly~~~d--~~~~~~ll~rAe~aG~~Alv 185 (203)
..+++-++..++|++.+- +..+.+++.+.. ++..++|+.+.+- .....++.+.|++.|.+.++
T Consensus 218 ~~~~~L~~~~~ipIa~~E-~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~ 284 (316)
T cd03319 218 DGLAYLRDKSPLPIMADE-SCFSAADAARLAGGGAYDGINIKLMKTGGLTEALRIADLARAAGLKVMV 284 (316)
T ss_pred HHHHHHHhcCCCCEEEeC-CCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCCEEE
Confidence 456677778889987764 567788887654 4677889987664 55567889999999987654
No 263
>PRK06852 aldolase; Validated
Probab=21.31 E-value=4.9e+02 Score=23.47 Aligned_cols=92 Identities=10% Similarity=-0.038 Sum_probs=49.1
Q ss_pred cccCcceEe--ccccch--hccCchHHHHHHHHHHhcCCeEEecCCC-------CCCHHHHHhhc-CCceeEEEeeeCCH
Q 028838 99 YKISAPIII--APTALH--KLANPEGEVATARAAASCNTIMVLSFTS-------SSSIEEVAASC-NAVRFYQLYVFKKR 166 (203)
Q Consensus 99 ~~~s~Pi~i--aP~g~~--~l~hp~gE~a~AraA~~~gi~~~lss~s-------s~sleeia~~~-~~~~w~Qly~~~d~ 166 (203)
+++-+|+++ =|-|.. .-..|+-=...+|.|+++|.=++=-.+. ..++++|.+++ +-+-.+.==...+.
T Consensus 164 ~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~~~g~vpVviaGG~k~~~ 243 (304)
T PRK06852 164 HKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYPKKEGANPAELFKEAVLAAGRTKVVCAGGSSTDP 243 (304)
T ss_pred HHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHHhCCCCcEEEeCCCCCCH
Confidence 366777665 232321 1011222356678888888554433332 24677777766 43211110011244
Q ss_pred HHHHHHHHHHHH-cCCcEEEEeecC
Q 028838 167 DIAATLVQRAER-NGFKALVLTADT 190 (203)
Q Consensus 167 ~~~~~ll~rAe~-aG~~AlvvTVD~ 190 (203)
+...++++.|.+ +|+..+++.=+.
T Consensus 244 ~e~L~~v~~ai~~aGa~Gv~~GRNI 268 (304)
T PRK06852 244 EEFLKQLYEQIHISGASGNATGRNI 268 (304)
T ss_pred HHHHHHHHHHHHHcCCceeeechhh
Confidence 556778888877 999988775443
No 264
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=21.29 E-value=1.7e+02 Score=25.12 Aligned_cols=24 Identities=13% Similarity=0.130 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEee
Q 028838 165 KRDIAATLVQRAERNGFKALVLTA 188 (203)
Q Consensus 165 d~~~~~~ll~rAe~aG~~AlvvTV 188 (203)
|-+-..++++-|.++|++-++=+|
T Consensus 187 dl~N~~~I~~i~l~aGv~~viPHi 210 (218)
T PF07071_consen 187 DLDNFEEIVKICLDAGVEKVIPHI 210 (218)
T ss_dssp -TTTHHHHHHHHHHTT-S-B--EE
T ss_pred CHHHHHHHHHHHHHcCCCeeccch
Confidence 666777888888888888776555
No 265
>TIGR00035 asp_race aspartate racemase.
Probab=21.14 E-value=1.4e+02 Score=25.09 Aligned_cols=57 Identities=16% Similarity=0.153 Sum_probs=35.7
Q ss_pred hcCCeEEecCCCCCCHHHHHhhcCCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 028838 130 SCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRL 193 (203)
Q Consensus 130 ~~gi~~~lss~ss~sleeia~~~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD~p~~ 193 (203)
+..+++++ .++..+.+..+.-..-.|- .-...+.+.+++.+++|+++|++.-+++..
T Consensus 32 ~~~~~~i~--~~~~~~~dr~~~~~~~~~~-----~~~~~l~~~~~~L~~~g~d~iviaCNTah~ 88 (229)
T TIGR00035 32 QEHPAEVL--FNNPNIPDRTAYILGRGED-----RPRPILIDIAVKLENAGADFIIMPCNTAHK 88 (229)
T ss_pred CCCCceee--eeCCCHHHHHHHHhcCCcc-----hHHHHHHHHHHHHHHcCCCEEEECCccHHH
Confidence 34466666 3333466665542111111 124677888999999999999999887653
No 266
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=21.10 E-value=2.2e+02 Score=24.80 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEee
Q 028838 165 KRDIAATLVQRAERNGFKALVLTA 188 (203)
Q Consensus 165 d~~~~~~ll~rAe~aG~~AlvvTV 188 (203)
|-+-..++++-|.++|++-++=+|
T Consensus 187 dl~Nf~~I~~i~ldaGv~kviPHI 210 (236)
T TIGR03581 187 DLDNFEEIVQIALDAGVEKVIPHV 210 (236)
T ss_pred cHHhHHHHHHHHHHcCCCeecccc
Confidence 778889999999999999988765
No 267
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=21.10 E-value=4.7e+02 Score=23.44 Aligned_cols=64 Identities=14% Similarity=0.122 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCCeEEecCCCCCCHHH----HHhhc--CCceeEEEeee------CCHHHHHHHHHHHHHcCCcEEE
Q 028838 121 EVATARAAASCNTIMVLSFTSSSSIEE----VAASC--NAVRFYQLYVF------KKRDIAATLVQRAERNGFKALV 185 (203)
Q Consensus 121 E~a~AraA~~~gi~~~lss~ss~slee----ia~~~--~~~~w~Qly~~------~d~~~~~~ll~rAe~aG~~Alv 185 (203)
...+..-+..+|++++..... ..+.+ |.++. +++.++++|-+ -+.+.+.+..+.|++.|+--|.
T Consensus 160 kkdi~~i~~a~g~~yVA~~~~-~~~~~~~~~i~~A~~~~Gps~I~~~spC~~~~~~~~~~~~~~~k~Av~tg~wply 235 (300)
T PRK11864 160 KKPVPDIMAAHKVPYVATASI-AYPEDFIRKLKKAKEIRGFKFIHLLAPCPPGWRFDPDKTIEIARLAVETGVWPLF 235 (300)
T ss_pred CCCHHHHHHHcCCCEEEEEeC-CCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCcChHHHHHHHHHHHHcCCceEE
Confidence 356677777788888764322 22333 33332 47777777754 2677888888999999986654
No 268
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=21.06 E-value=1.5e+02 Score=26.24 Aligned_cols=44 Identities=16% Similarity=0.095 Sum_probs=30.8
Q ss_pred cccchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHhhc
Q 028838 109 PTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASC 152 (203)
Q Consensus 109 P~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~~~ 152 (203)
|-+++++.-.+|=.-+.++.++.|++.+.=-+...-++.+++..
T Consensus 50 p~sFqG~G~eeGL~iL~~vk~~~glpvvTeV~~~~~~~~vae~v 93 (258)
T TIGR01362 50 IHSFRGPGLEEGLKILQKVKEEFGVPILTDVHESSQCEPVAEVV 93 (258)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhhC
Confidence 55666664356778899999999999887656655566665553
No 269
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=21.03 E-value=3.3e+02 Score=24.24 Aligned_cols=50 Identities=10% Similarity=0.100 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHhcCCeEEecCCCCCCHHHHHhhcCCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEE
Q 028838 119 EGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVL 186 (203)
Q Consensus 119 ~gE~a~AraA~~~gi~~~lss~ss~sleeia~~~~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~Alvv 186 (203)
+..+...+.+.++|++.++.- -.+.+.-+.+.+++.+.+|.++|+.-++.
T Consensus 169 ~~Ri~al~~l~eaGi~~~v~v------------------~PIiP~~~d~e~e~~l~~~~~ag~~~v~~ 218 (297)
T COG1533 169 EERLEALKELSEAGIPVGLFV------------------APIIPGLNDEELERILEAAAEAGARVVVY 218 (297)
T ss_pred HHHHHHHHHHHHCCCeEEEEE------------------ecccCCCChHHHHHHHHHHHHcCCCeeEe
Confidence 444556666666666665521 12223333466777777777777766554
No 270
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.01 E-value=3.2e+02 Score=23.10 Aligned_cols=55 Identities=5% Similarity=0.062 Sum_probs=29.9
Q ss_pred HHHHHHHhcCCeEEecCCCCCCHHHHHhhc-C-CceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEE
Q 028838 123 ATARAAASCNTIMVLSFTSSSSIEEVAASC-N-AVRFYQLYVFKKRDIAATLVQRAERNGFKALVL 186 (203)
Q Consensus 123 a~AraA~~~gi~~~lss~ss~sleeia~~~-~-~~~w~Qly~~~d~~~~~~ll~rAe~aG~~Alvv 186 (203)
..++.|.++|.-|++|-..+. ++.+.+ . ++ .|+|.-..-++ +.+|.++|++.|-+
T Consensus 78 ~~a~~a~~aGA~FivsP~~~~---~vi~~a~~~~i----~~iPG~~TptE--i~~a~~~Ga~~vKl 134 (212)
T PRK05718 78 EQLAQAIEAGAQFIVSPGLTP---PLLKAAQEGPI----PLIPGVSTPSE--LMLGMELGLRTFKF 134 (212)
T ss_pred HHHHHHHHcCCCEEECCCCCH---HHHHHHHHcCC----CEeCCCCCHHH--HHHHHHCCCCEEEE
Confidence 456777777777777665442 333322 1 22 23344333332 66677777777666
No 271
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=21.01 E-value=5.9e+02 Score=22.53 Aligned_cols=69 Identities=19% Similarity=0.207 Sum_probs=42.4
Q ss_pred chHHHHHHHHHHhcCCeEEecCCCCCCH-------HHHHhhc-CCceeEEEeeeCCHHHHHHHHHHHHHcCCcEEEEeec
Q 028838 118 PEGEVATARAAASCNTIMVLSFTSSSSI-------EEVAASC-NAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTAD 189 (203)
Q Consensus 118 p~gE~a~AraA~~~gi~~~lss~ss~sl-------eeia~~~-~~~~w~Qly~~~d~~~~~~ll~rAe~aG~~AlvvTVD 189 (203)
..-...+-++|++.|+-..+...+..+. +++.... .++ +..+.|.+.+...+++|.++|...|.++-|
T Consensus 39 ~~~~~Gi~~aa~~~G~~v~~~~~~~~d~~~q~~~i~~li~~~vdgI----iv~~~d~~al~~~l~~a~~~gIpVV~~d~~ 114 (336)
T PRK15408 39 TSGGNGAKEAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAI----IVSAVSPDGLCPALKRAMQRGVKVLTWDSD 114 (336)
T ss_pred HHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEE----EEecCCHHHHHHHHHHHHHCCCeEEEeCCC
Confidence 3455677888899998888722122222 1222221 232 234667887889999999999876666555
Q ss_pred C
Q 028838 190 T 190 (203)
Q Consensus 190 ~ 190 (203)
.
T Consensus 115 ~ 115 (336)
T PRK15408 115 T 115 (336)
T ss_pred C
Confidence 3
No 272
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=20.93 E-value=4.6e+02 Score=23.75 Aligned_cols=84 Identities=14% Similarity=0.103 Sum_probs=44.8
Q ss_pred CcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHH-------Hhh-cCCceeEEEeeeCCHHHHHHHH
Q 028838 102 SAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEV-------AAS-CNAVRFYQLYVFKKRDIAATLV 173 (203)
Q Consensus 102 s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleei-------a~~-~~~~~w~Qly~~~d~~~~~~ll 173 (203)
..||+-+||+... . .-.+|.+..++|-.=+++... .+.|++ ++. .+.|+-.-|..+.+.....+.+
T Consensus 2 ~yPIiqgpM~~vs--~---~~~LaaAVS~AGgLG~la~~~-~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l 75 (320)
T cd04743 2 RYPIVQGPMTRVS--D---VAEFAVAVAEGGGLPFIALAL-MRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQL 75 (320)
T ss_pred CCCEECCCcCCCC--C---cHHHHHHHHhCCccccCCCCC-CCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHH
Confidence 4799999986431 1 135566666666555555322 234433 221 1234323332232333445677
Q ss_pred HHHHHcCCcEEEEeecCC
Q 028838 174 QRAERNGFKALVLTADTP 191 (203)
Q Consensus 174 ~rAe~aG~~AlvvTVD~p 191 (203)
+-+.+.+.+.++++--.|
T Consensus 76 ~vi~e~~v~~V~~~~G~P 93 (320)
T cd04743 76 AVVRAIKPTFALIAGGRP 93 (320)
T ss_pred HHHHhcCCcEEEEcCCCh
Confidence 777788887777665433
No 273
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=20.84 E-value=5.3e+02 Score=24.22 Aligned_cols=90 Identities=21% Similarity=0.303 Sum_probs=46.9
Q ss_pred cccCcceEeccccchhccCchHHHHHHHHHHh-c-CCeEEecCCCCC-CHHHHHhhc---CCceeEEEeeeCCHHHHHHH
Q 028838 99 YKISAPIIIAPTALHKLANPEGEVATARAAAS-C-NTIMVLSFTSSS-SIEEVAASC---NAVRFYQLYVFKKRDIAATL 172 (203)
Q Consensus 99 ~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~-~-gi~~~lss~ss~-sleeia~~~---~~~~w~Qly~~~d~~~~~~l 172 (203)
.....|++|.-+| +|+-+..+.++|.+ . |=--.|.+..-. ..+++++.+ +.+. =+.-+.|.+....+
T Consensus 185 ~av~vPLIL~gsg-----~~~kD~eVLeaaLe~~~G~kpLL~SAt~e~Ny~~ia~lAk~yg~~V--vv~s~~Din~ak~L 257 (389)
T TIGR00381 185 QAVDVPIVIGGSG-----NPEKDPLVLEKAAEVAEGERCLLASANLDLDYEKIANAAKKYGHVV--LSWTIMDINMQKTL 257 (389)
T ss_pred HhCCCCEEEeCCC-----CCcCCHHHHHHHHHHhCCCCcEEEecCchhhHHHHHHHHHHhCCeE--EEEcCCcHHHHHHH
Confidence 4456788776544 23322222222222 1 212233333333 455666554 2221 12224577788888
Q ss_pred HHHHHHcCCc--EEEEeecCCCCCC
Q 028838 173 VQRAERNGFK--ALVLTADTPRLGR 195 (203)
Q Consensus 173 l~rAe~aG~~--AlvvTVD~p~~g~ 195 (203)
-+++.+.|++ -||++.-+...|.
T Consensus 258 n~kL~~~Gv~~eDIVlDP~t~alG~ 282 (389)
T TIGR00381 258 NRYLLKRGLMPRDIVMDPTTCALGY 282 (389)
T ss_pred HHHHHHcCCCHHHEEEcCCCccccC
Confidence 8888888888 8888777755443
No 274
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=20.79 E-value=1.3e+02 Score=29.26 Aligned_cols=32 Identities=28% Similarity=0.308 Sum_probs=25.5
Q ss_pred eeEEEeeeCCHHH----HHHHHHHHHHcCCcEEEEe
Q 028838 156 RFYQLYVFKKRDI----AATLVQRAERNGFKALVLT 187 (203)
Q Consensus 156 ~w~Qly~~~d~~~----~~~ll~rAe~aG~~AlvvT 187 (203)
.|||+|...-++. ..++++++++.|+..|++|
T Consensus 423 ~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gageil~t 458 (538)
T PLN02617 423 AWYQCTVKGGREGRPIGAYELAKAVEELGAGEILLN 458 (538)
T ss_pred eEEEEEEecCcccCCCCHHHHHHHHHhcCCCEEEEe
Confidence 4899999764442 3688999999999988887
No 275
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=20.77 E-value=1.1e+02 Score=26.43 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=18.0
Q ss_pred HHHHHHHHHhcCCeEEecCCCCCCHHHHHhh
Q 028838 121 EVATARAAASCNTIMVLSFTSSSSIEEVAAS 151 (203)
Q Consensus 121 E~a~AraA~~~gi~~~lss~ss~sleeia~~ 151 (203)
+..+-+.+++.|.|+++||..+ +++||.++
T Consensus 102 n~~lL~~~A~tgkPvIlSTG~s-tl~EI~~A 131 (241)
T PF03102_consen 102 NLPLLEYIAKTGKPVILSTGMS-TLEEIERA 131 (241)
T ss_dssp -HHHHHHHHTT-S-EEEE-TT---HHHHHHH
T ss_pred CHHHHHHHHHhCCcEEEECCCC-CHHHHHHH
Confidence 3677888888888888888764 47776553
No 276
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.70 E-value=3.2e+02 Score=23.07 Aligned_cols=123 Identities=19% Similarity=0.207 Sum_probs=63.5
Q ss_pred HHHHhhhhcccCCCCCCCCCCCHHHHHHHHHHhCChhhhhhhcCCccc-hhhHHHHHHHhhccccc-------cccccCC
Q 028838 16 DLLEKLINVHVCRFQMAAEPVNLNEFQELARLALPKMYYDFYAGGAED-EHTLKENVEAFHRITFR-------PRILVDV 87 (203)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~Ar~~Lp~~~~~Y~~gGa~d-e~T~~~N~~af~~i~L~-------pRvL~dv 87 (203)
++++.+..+.+-++ =+..+.++....++.-+ .||-.- |.|++ +-.+++.|+-. |.++.+.
T Consensus 5 ~~~~~l~~~~vi~v---ir~~~~~~a~~~~~al~--------~~Gi~~iEit~~-~~~a~~~i~~l~~~~~~~p~~~vGa 72 (213)
T PRK06552 5 EILTKLKANGVVAV---VRGESKEEALKISLAVI--------KGGIKAIEVTYT-NPFASEVIKELVELYKDDPEVLIGA 72 (213)
T ss_pred HHHHHHHHCCEEEE---EECCCHHHHHHHHHHHH--------HCCCCEEEEECC-CccHHHHHHHHHHHcCCCCCeEEee
Confidence 45555554443332 23457777777766543 444443 66664 23333322211 3455554
Q ss_pred CCCCcceee-cCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHhhc-CCceeEEEee
Q 028838 88 SRIDLSTTI-LDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASC-NAVRFYQLYV 162 (203)
Q Consensus 88 ~~~dtst~l-~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~~~-~~~~w~Qly~ 162 (203)
..+-+.-++ .=...-.-|+++| .-+..+.+.|.+.|++++-|.++ .+|+.++. -+....++|+
T Consensus 73 GTV~~~~~~~~a~~aGA~FivsP---------~~~~~v~~~~~~~~i~~iPG~~T---~~E~~~A~~~Gad~vklFP 137 (213)
T PRK06552 73 GTVLDAVTARLAILAGAQFIVSP---------SFNRETAKICNLYQIPYLPGCMT---VTEIVTALEAGSEIVKLFP 137 (213)
T ss_pred eeCCCHHHHHHHHHcCCCEEECC---------CCCHHHHHHHHHcCCCEECCcCC---HHHHHHHHHcCCCEEEECC
Confidence 444322221 1123345566666 23445677788888888877665 56666554 2455566654
No 277
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=20.63 E-value=1.2e+02 Score=26.69 Aligned_cols=36 Identities=33% Similarity=0.297 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHcCCcEEEEe----ecCCCCCCchhhhh
Q 028838 166 RDIAATLVQRAERNGFKALVLT----ADTPRLGRREADIK 201 (203)
Q Consensus 166 ~~~~~~ll~rAe~aG~~AlvvT----VD~p~~g~Re~d~r 201 (203)
......|++-|.++|++|||+. =|.|..+.|..|++
T Consensus 82 ~a~a~~la~yA~acGA~aLvlcPlNd~s~~~~~vr~~~lv 121 (272)
T COG4130 82 VAEARGLADYAAACGAKALVLCPLNDGSWPGTAVRREDLV 121 (272)
T ss_pred HHHHHHHHHHHHhcCCceEEEEeccCCCCCCcccchHHHH
Confidence 4566789999999999999984 23344555555544
No 278
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=20.43 E-value=1.8e+02 Score=25.43 Aligned_cols=85 Identities=5% Similarity=0.007 Sum_probs=49.9
Q ss_pred ccCCCCCCcceeecCcccCcceEeccccchhccCchHHHHHHHHHHhcCCeEEecCCCCCCHHHHHh---hc--CCceeE
Q 028838 84 LVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAA---SC--NAVRFY 158 (203)
Q Consensus 84 L~dv~~~dtst~l~G~~~s~Pi~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lss~ss~sleeia~---~~--~~~~w~ 158 (203)
.+|..++|+.+.-|| +....-...++.-..+++.+++.||..-+.-+...-++.+.. .. +.+.++
T Consensus 101 ~pd~asl~~gs~n~~----------~~~~~~~n~~~~~~~~~~~~~e~Gi~pe~ev~d~~~l~~~~~l~~~G~l~~p~~~ 170 (272)
T PF05853_consen 101 KPDMASLNPGSMNFG----------TRDRVYINTPADARELARRMRERGIKPEIEVFDPGHLRNARRLIEKGLLPGPLLV 170 (272)
T ss_dssp --SEEEEE-S-EEES----------GGCSEE---HHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHTTSS-SSEEE
T ss_pred CCCeEEecccccccc----------cCCceecCCHHHHHHHHHHHHHcCCeEEEEEEcHHHHHHHHHHHHCCCCCCCeEE
Confidence 566666777777776 111111112344478999999999999998887655655433 33 368899
Q ss_pred EEeee------CCHHHHHHHHHHHHH
Q 028838 159 QLYVF------KKRDIAATLVQRAER 178 (203)
Q Consensus 159 Qly~~------~d~~~~~~ll~rAe~ 178 (203)
|+++- .+.+....+++....
T Consensus 171 ~~vlG~~~g~~~~~~~l~~~l~~l~~ 196 (272)
T PF05853_consen 171 NFVLGVPGGMPATPENLLAMLDMLPE 196 (272)
T ss_dssp EEEES-TTS--S-HHHHHHHHHHHHH
T ss_pred EEcccCCCCCCCCHHHHHHHHHhcCC
Confidence 99872 355666677776666
No 279
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=20.39 E-value=1.6e+02 Score=23.82 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHcCCcEEEEeecC
Q 028838 168 IAATLVQRAERNGFKALVLTADT 190 (203)
Q Consensus 168 ~~~~ll~rAe~aG~~AlvvTVD~ 190 (203)
.+-.|++++...|-+.+|.|.|-
T Consensus 17 ~~c~L~~k~~~~G~rvlI~~~d~ 39 (144)
T COG2927 17 AACRLAEKAWRSGWRVLIQCEDE 39 (144)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCH
Confidence 56688999999999999999885
No 280
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.06 E-value=2.5e+02 Score=23.62 Aligned_cols=38 Identities=13% Similarity=0.104 Sum_probs=20.3
Q ss_pred HHHHHHHHhcCCeEEecCCCCCCHHHHHhhcC-CceeEEEee
Q 028838 122 VATARAAASCNTIMVLSFTSSSSIEEVAASCN-AVRFYQLYV 162 (203)
Q Consensus 122 ~a~AraA~~~gi~~~lss~ss~sleeia~~~~-~~~w~Qly~ 162 (203)
..+.+.|.+.|++++=|-++ .-||..+.. |-.+..+|+
T Consensus 87 ~~vi~~a~~~~i~~iPG~~T---ptEi~~A~~~Ga~~vK~FP 125 (201)
T PRK06015 87 QELLAAANDSDVPLLPGAAT---PSEVMALREEGYTVLKFFP 125 (201)
T ss_pred HHHHHHHHHcCCCEeCCCCC---HHHHHHHHHCCCCEEEECC
Confidence 45566666777776665554 445544432 333444444
Done!