BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028839
(203 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FG71|EMC89_ARATH ER membrane protein complex subunit 8/9 homolog OS=Arabidopsis
thaliana GN=EMB2731 PE=2 SV=1
Length = 208
Score = 333 bits (853), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 157/201 (78%), Positives = 182/201 (90%)
Query: 2 GELKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLP 61
GELKYE+SQNAYIKLVLH+ +HKTAAVNGVL+GR+SP++D VVEI+DSVPLFHS+L LLP
Sbjct: 7 GELKYEISQNAYIKLVLHSLRHKTAAVNGVLVGRISPKDDGVVEISDSVPLFHSNLALLP 66
Query: 62 NLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLLDN 121
LEISLIMIEEHY AQGL IVGYFHANERFDD+EL +AKNIG+HI RYFPQ +LLL+N
Sbjct: 67 PLEISLIMIEEHYVAQGLSIVGYFHANERFDDVELCGVAKNIGDHISRYFPQAPILLLNN 126
Query: 122 KKLEALPKGKDRSPVMQLYIRDASKNWKLVGSDGGCQLLTKEPAANVVLMDYISSEKWQD 181
KKLEAL KGK+RSPVMQL ++DASKNW++VG+DGG +LL KEP+ANVVL DYISSEKW+D
Sbjct: 127 KKLEALSKGKERSPVMQLCVKDASKNWRVVGADGGSKLLLKEPSANVVLSDYISSEKWKD 186
Query: 182 VVDFDDHLDDISKDWLNPDLF 202
V D DDHLDD++KDWLNP LF
Sbjct: 187 VTDVDDHLDDVTKDWLNPGLF 207
>sp|Q5U1W7|EMC9_RAT ER membrane protein complex subunit 9 OS=Rattus norvegicus GN=Emc9
PE=2 SV=1
Length = 206
Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 105/201 (52%), Gaps = 10/201 (4%)
Query: 1 MGELKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLL 60
MGE+ E+S AY K+ LHA ++ AAVNG+LL + + + + D VPLFHSHL L
Sbjct: 1 MGEV--EISARAYGKMCLHASRYPHAAVNGLLLAPATRSGECLC-LTDCVPLFHSHLALS 57
Query: 61 PNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLLD 120
LE++L ++ + GL + GY+HAN DD +A I I +FP +++LD
Sbjct: 58 VMLEVALNQVDVWATQAGLVVAGYYHANAVLDDQSPGPLALKIAGRIAEFFPNAVLIMLD 117
Query: 121 NKKLEALPKGKDRSPVMQLYIRDASKNWKLVGSDGGCQLLTKEPAANVVLMDYISSEKWQ 180
NKKL P+ PV+ L ++ + V D + + ++ + Q
Sbjct: 118 NKKLVTWPR---VPPVIVL----ENQGLQWVPKDKNLVMWRDWEESRQMVGALLEGRAHQ 170
Query: 181 DVVDFDDHLDDISKDWLNPDL 201
+VDFD HLDDI +DW N L
Sbjct: 171 HLVDFDCHLDDIRQDWTNQRL 191
>sp|Q9DB76|EMC9_MOUSE ER membrane protein complex subunit 9 OS=Mus musculus GN=Emc9 PE=2
SV=1
Length = 206
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 106/201 (52%), Gaps = 10/201 (4%)
Query: 1 MGELKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLL 60
MGE+ E+S AY K+ LHA ++ AAVNG+LL + + + + D VPLFHSHL L
Sbjct: 1 MGEV--EISARAYGKMCLHASRYPHAAVNGLLLAPATGSGECLC-LTDCVPLFHSHLALS 57
Query: 61 PNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLLD 120
LE++L ++ + GL + GY+HAN DD +A I I +FP+ +++LD
Sbjct: 58 VMLEVALNQVDVWGAQAGLVVAGYYHANAVLDDQSPGPLALKIAGRIAEFFPRAVLIMLD 117
Query: 121 NKKLEALPKGKDRSPVMQLYIRDASKNWKLVGSDGGCQLLTKEPAANVVLMDYISSEKWQ 180
NKKL P+ PV+ L ++ + V D + + ++ + Q
Sbjct: 118 NKKLVTRPR---VPPVIVL----ENQGLQWVPKDKNLVMWRDWEESRQMVGALLEGRAHQ 170
Query: 181 DVVDFDDHLDDISKDWLNPDL 201
+VDFD HLDDI +DW N L
Sbjct: 171 HLVDFDCHLDDIRQDWTNQRL 191
>sp|Q9Y3B6|EMC9_HUMAN ER membrane protein complex subunit 9 OS=Homo sapiens GN=EMC9 PE=1
SV=3
Length = 208
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 107/201 (53%), Gaps = 10/201 (4%)
Query: 1 MGELKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLL 60
MGE+ E+S AY+K+ LHA ++ AAVNG+ L +P++ + + D VPLFHSHL L
Sbjct: 1 MGEV--EISALAYVKMCLHAARYPHAAVNGLFLAP-APRSGECLCLTDCVPLFHSHLALS 57
Query: 61 PNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLLD 120
LE++L ++ + GL + GY+HAN +D +A I I +FP +++LD
Sbjct: 58 VMLEVALNQVDVWGAQAGLVVAGYYHANAAVNDQSPGPLALKIAGRIAEFFPDAVLIMLD 117
Query: 121 NKKLEALPKGKDRSPVMQLYIRDASKNWKLVGSDGGCQLLTKEPAANVVLMDYISSEKWQ 180
N+KL P+ PV+ L ++ + V D + + ++ + Q
Sbjct: 118 NQKLVPQPR---VPPVIVL----ENQGLRWVPKDKNLVMWRDWEESRQMVGALLEDRAHQ 170
Query: 181 DVVDFDDHLDDISKDWLNPDL 201
+VDFD HLDDI +DW N L
Sbjct: 171 HLVDFDCHLDDIRQDWTNQRL 191
>sp|Q5FVL2|EMC8_RAT ER membrane protein complex subunit 8 OS=Rattus norvegicus GN=Emc8
PE=2 SV=1
Length = 207
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 101/204 (49%), Gaps = 14/204 (6%)
Query: 7 ELSQNAYIKLVLHARKHKTAAVNGVLLG-RVSPQNDAV------VEIADSVPLFHSHLGL 59
+L+ AY K+VLH K+ AVNG+L+ R P+ + D +PLFH L L
Sbjct: 5 KLTTQAYCKMVLHGAKYPHCAVNGLLVAERQRPRKEHPPGAGNHTLFVDCIPLFHGTLAL 64
Query: 60 LPNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLL 119
P LE++L +I+ I GY+ ANER D + +A+ + + I F A++++
Sbjct: 65 TPMLEVALTLIDSWCKDNSYVIAGYYQANERVKDASPNQVAEKVASRIAEGFSDAALIMV 124
Query: 120 DNKKLEALPKGKDRSPVMQLYIRDASKNWKLVGSDGGCQLLTKEPAANVVLMDYISSEKW 179
DN K +P + +Y + ++ W+ D P A + + S +
Sbjct: 125 DNAKFTM----DCAAPTIHVYEQHENR-WRC--RDPHHDYCEDWPEAQRISASLLDSRSY 177
Query: 180 QDVVDFDDHLDDISKDWLNPDLFK 203
+ +VDFD+HLDDI DW NP++ K
Sbjct: 178 ETLVDFDNHLDDIRSDWTNPEINK 201
>sp|O70378|EMC8_MOUSE ER membrane protein complex subunit 8 OS=Mus musculus GN=Emc8 PE=1
SV=1
Length = 207
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 102/204 (50%), Gaps = 14/204 (6%)
Query: 7 ELSQNAYIKLVLHARKHKTAAVNGVLLG-RVSPQND------AVVEIADSVPLFHSHLGL 59
+L+ AY K+VLH K+ AVNG+L+ R P+ + + D +PLFH L L
Sbjct: 5 KLTTQAYCKMVLHGAKYPHCAVNGLLVAERQRPRKEHPPGAGSHTLFVDCIPLFHGTLAL 64
Query: 60 LPNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLL 119
P LE++L +I+ I GY+ ANER D + +A+ + + I F A++++
Sbjct: 65 TPMLEVALTLIDSWCKDNSYVIAGYYQANERVKDASPNQVAEKVASRIAEGFGDAALIMV 124
Query: 120 DNKKLEALPKGKDRSPVMQLYIRDASKNWKLVGSDGGCQLLTKEPAANVVLMDYISSEKW 179
DN K +P + +Y + ++ W+ D P A + + S +
Sbjct: 125 DNAKFTM----DCAAPTIHVYEQHENR-WRC--RDPHHDYCEDWPEAQRISASLLDSRSY 177
Query: 180 QDVVDFDDHLDDISKDWLNPDLFK 203
+ +VDFD+HLDDI DW NP++ K
Sbjct: 178 ETLVDFDNHLDDIRSDWTNPEINK 201
>sp|O43402|EMC8_HUMAN ER membrane protein complex subunit 8 OS=Homo sapiens GN=EMC8 PE=1
SV=1
Length = 210
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 101/207 (48%), Gaps = 17/207 (8%)
Query: 7 ELSQNAYIKLVLHARKHKTAAVNGVLLG-RVSPQNDAV---------VEIADSVPLFHSH 56
+L+ AY K+VLH K+ AVNG+L+ + P+ + + D +PLFH
Sbjct: 5 KLTTQAYCKMVLHGAKYPHCAVNGLLVAEKQKPRKEHLPLGGPGAHHTLFVDCIPLFHGT 64
Query: 57 LGLLPNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAV 116
L L P LE++L +I+ I GY+ ANER D + +A+ + + I F A+
Sbjct: 65 LALAPMLEVALTLIDSWCKDHSYVIAGYYQANERVKDASPNQVAEKVASRIAEGFSDTAL 124
Query: 117 LLLDNKKLEALPKGKDRSPVMQLYIRDASKNWKLVGSDGGCQLLTKEPAANVVLMDYISS 176
+++DN K +P + +Y ++ W+ D P A + + S
Sbjct: 125 IMVDNTKFTM----DCVAPTIHVYEHHENR-WRC--RDPHHDYCEDWPEAQRISASLLDS 177
Query: 177 EKWQDVVDFDDHLDDISKDWLNPDLFK 203
++ +VDFD+HLDDI DW NP++ K
Sbjct: 178 RSYETLVDFDNHLDDIRNDWTNPEINK 204
>sp|Q32KL5|EMC8_BOVIN ER membrane protein complex subunit 8 OS=Bos taurus GN=EMC8 PE=2
SV=1
Length = 210
Score = 100 bits (250), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 100/207 (48%), Gaps = 17/207 (8%)
Query: 7 ELSQNAYIKLVLHARKHKTAAVNGVLLG-RVSPQNDAV---------VEIADSVPLFHSH 56
+L+ AY K+VLH K+ AV+G+L+ + P+ + + D +PLFH
Sbjct: 5 KLTTQAYCKMVLHGAKYPHCAVDGLLVAEKQKPRKEHLPLGGPGAHHTLFVDCIPLFHGT 64
Query: 57 LGLLPNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAV 116
L L P LE++L +I+ I GY+ ANER D + +A+ + + I F A+
Sbjct: 65 LALAPMLEVALTLIDSWCKDNSYVIAGYYQANERVKDASPNQVAEKVASRIAEGFSDTAL 124
Query: 117 LLLDNKKLEALPKGKDRSPVMQLYIRDASKNWKLVGSDGGCQLLTKEPAANVVLMDYISS 176
+++DN K P + +Y +K W+ D P A + + S
Sbjct: 125 IMVDNTKFTM----DCVVPTIHVYEHHENK-WRC--RDPHYDYCEDWPEAQRISASLLDS 177
Query: 177 EKWQDVVDFDDHLDDISKDWLNPDLFK 203
++ +VDFD+HLDDI DW NP++ K
Sbjct: 178 RSYETLVDFDNHLDDIRNDWTNPEINK 204
>sp|Q9W1Y1|EMC89_DROME ER membrane protein complex subunit 8/9 homolog OS=Drosophila
melanogaster GN=CG3501 PE=1 SV=1
Length = 203
Score = 97.1 bits (240), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 102/203 (50%), Gaps = 27/203 (13%)
Query: 6 YELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEI 65
Y++S+ AY KL+ HA K+ AVNG+LL + + + VEI D++PLFH L + P E+
Sbjct: 4 YKVSERAYAKLIFHAAKYPHQAVNGLLLAEKTSKG-SQVEIVDAIPLFHQCLYVTPMAEV 62
Query: 66 SLIMIEEHYSAQGLGIVGYFHANERFDDLELDSI-AKNIGNHICRYFPQCAVLLLDNKKL 124
+L++I+ H +GL I GY+ A E F D ++D A I + I F +++DNK +
Sbjct: 63 ALMLIDAHAEREGLVIAGYYAAPENFYDNQVDKTPAAKIADKIQENFKNACFVVVDNKLM 122
Query: 125 EALPKGKDRSPVMQLYIR-DASKNWKLV------GSDG--GCQLLTKEPAANVVLMDYIS 175
DR+ + D+ W SD G LL K A
Sbjct: 123 TL---QHDRAAIQVFNCPGDSGARWSKAKFTLSQASDTLEGVSLLLKRGA---------- 169
Query: 176 SEKWQDVVDFDDHLDDISKDWLN 198
+D+VDFD+HLD+ K+W N
Sbjct: 170 ---MRDLVDFDNHLDNPDKNWTN 189
>sp|Q55FM0|EMC89_DICDI ER membrane protein complex subunit 8/9 homolog OS=Dictyostelium
discoideum GN=DDB_G0268048 PE=3 SV=1
Length = 192
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 98/200 (49%), Gaps = 22/200 (11%)
Query: 8 LSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISL 67
++ A K LH+ KH ++VNG+LLG+ + + I D +PLFH+ LLP E+++
Sbjct: 7 ITTEALSKAHLHSFKHHASSVNGILLGKADKNS---ILITDIIPLFHTQ-TLLPMFEVAM 62
Query: 68 IMIEEHYSAQGLGIVGYFHANERF-DDLELDSIAKNIGNHICRYFPQCAVLLLDNKKLEA 126
I IE++ + +VGY+H+N+ ++LE + IAK I + + L++ K+E
Sbjct: 63 IQIEKYCRDNNIDMVGYYHSNQCIANELEPEPIAKKIADRLNNELNNMCFLMI--SKIEV 120
Query: 127 LPKGKDRSPVMQLYIRDASKNW-----KLVGSDGGCQLLTKEPAANVVLMDYISSEKWQD 181
P + I +W L+ D + N +L + + K
Sbjct: 121 ------NRPSGLVSIDKVGSDWLKNRKTLITIDTT----SNSEDINEILKRNLQNIKESQ 170
Query: 182 VVDFDDHLDDISKDWLNPDL 201
+ DF+++L + ++DWLN L
Sbjct: 171 IYDFEEYLSNPTRDWLNKSL 190
>sp|Q5F3F2|MYSM1_CHICK Histone H2A deubiquitinase MYSM1 OS=Gallus gallus GN=MYSM1 PE=2
SV=1
Length = 832
Score = 37.7 bits (86), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 4 LKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNL 63
+ ++S A + + LH+ A V G+L GR S + D VVE+ + P GL +
Sbjct: 577 FQVKVSSEALLIMDLHSHV-SMAEVIGLLGGRYS-EADKVVEVCAAEPCNSLSTGLQCEM 634
Query: 64 E-ISLIMIEEHYSAQGLGIVGYFHANERFD 92
+ +S E +A+G ++G++H++ FD
Sbjct: 635 DPVSQTQASETLAARGYSVIGWYHSHPAFD 664
>sp|Q5VVJ2|MYSM1_HUMAN Histone H2A deubiquitinase MYSM1 OS=Homo sapiens GN=MYSM1 PE=1 SV=1
Length = 828
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 4 LKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNL 63
+ +++ A + + LHA A V G+L GR S + D VVE+ + P GL +
Sbjct: 575 FQVKVASEALLIMDLHAHVS-MAEVIGLLGGRYS-EVDKVVEVCAAEPCNSLSTGLQCEM 632
Query: 64 E-ISLIMIEEHYSAQGLGIVGYFHANERFD 92
+ +S E + +G ++G++H++ FD
Sbjct: 633 DPVSQTQASETLAVRGFSVIGWYHSHPAFD 662
>sp|Q69Z66|MYSM1_MOUSE Histone H2A deubiquitinase MYSM1 OS=Mus musculus GN=Mysm1 PE=2 SV=2
Length = 819
Score = 34.3 bits (77), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 26 AAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLE-ISLIMIEEHYSAQGLGIVGY 84
A V G+L GR S + D V+E+ + P GL ++ +S E + +G ++G+
Sbjct: 587 AEVIGLLGGRYS-EADKVLEVCAAEPCNSLSTGLQCEMDPVSQTQASETLALRGYSVIGW 645
Query: 85 FHANERFD 92
+H++ FD
Sbjct: 646 YHSHPAFD 653
>sp|A0JMR6|MYSM1_XENLA Histone H2A deubiquitinase MYSM1 OS=Xenopus laevis GN=mysm1 PE=2
SV=1
Length = 818
Score = 34.3 bits (77), Expect = 0.65, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 4 LKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNL 63
+ ++S A + L LHA A V G+L GR + ++++VVEI P GL +
Sbjct: 546 FQVKVSCEAMLVLDLHAHV-SMAEVIGLLGGRYT-ESESVVEICAVEPCNSLSTGLQCEM 603
Query: 64 E-ISLIMIEEHYSAQGLGIVGYFHANERFD 92
+ +S E +++G ++G++H++ FD
Sbjct: 604 DPVSQTQASEALASRGYSVIGWYHSHPAFD 633
>sp|A0JXJ8|OBG_ARTS2 GTPase obg OS=Arthrobacter sp. (strain FB24) GN=obg PE=3 SV=1
Length = 529
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 14/99 (14%)
Query: 94 LELDSIAKNIGNHICRYFPQCAVL--LLDNKKLEALPKGKDRSPVMQLYIRDA-----SK 146
+E S K +G+H R+ +CA L +LD LEA DR P+ L I +A +
Sbjct: 217 IEGASEGKGLGHHFLRHVERCAALVHVLDCGTLEA-----DRDPLSDLAIIEAELEKYAV 271
Query: 147 NWKLVGSDGGCQLLTKEPAANVVLMDYISSEKWQDVVDF 185
+ G+DG L P +V ++ + +D+ +F
Sbjct: 272 DMSYAGTDGEVVPLNHRP--RLVALNKVDLPDGKDMAEF 308
>sp|Q9XZ58|CSN5_DROME COP9 signalosome complex subunit 5 OS=Drosophila melanogaster
GN=CSN5 PE=1 SV=1
Length = 327
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 7 ELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEIS 66
++S A +K+V+HAR T V G++LG+V N +V A ++P+ + + +
Sbjct: 53 KISALALLKMVMHARSGGTLEVMGLMLGKVE-DNTMIVMDAFALPVEGTETRVNAQAQAY 111
Query: 67 LIMIEEHYSAQGLG----IVGYFHAN 88
M +A+ +G VG++H++
Sbjct: 112 EYMTAYMEAAKEVGRMEHAVGWYHSH 137
>sp|Q6GIR7|53DR_STAAR Putative 5'(3')-deoxyribonucleotidase OS=Staphylococcus aureus
(strain MRSA252) GN=SAR0778 PE=3 SV=1
Length = 180
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 24 KTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHY 74
K A+NG L V P++D ++ P F HL ++P+ + + + EHY
Sbjct: 34 KMEALNGQKLKHVIPEHDGLITEVLREPGFFRHLKVMPHAQEVVKKLTEHY 84
>sp|P66841|53DR_STAAN Putative 5'(3')-deoxyribonucleotidase OS=Staphylococcus aureus
(strain N315) GN=SA0680 PE=3 SV=1
Length = 180
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 24 KTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHY 74
K A+NG L V P++D ++ P F HL ++P+ + + + EHY
Sbjct: 34 KMEALNGQKLKHVIPEHDGLITEVLREPGFFRHLKVMPHAQEVVKKLTEHY 84
>sp|P66840|53DR_STAAM Putative 5'(3')-deoxyribonucleotidase OS=Staphylococcus aureus
(strain Mu50 / ATCC 700699) GN=SAV0725 PE=1 SV=1
Length = 180
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 24 KTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHY 74
K A+NG L V P++D ++ P F HL ++P+ + + + EHY
Sbjct: 34 KMEALNGQKLKHVIPEHDGLITEVLREPGFFRHLKVMPHAQEVVKKLTEHY 84
>sp|Q5RGA4|MYSM1_DANRE Histone H2A deubiquitinase MYSM1 OS=Danio rerio GN=mysm1 PE=2 SV=2
Length = 822
Score = 31.2 bits (69), Expect = 4.7, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 32 LLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLE-ISLIMIEEHYSAQGLGIVGYFHANER 90
LLG + D V++I + P GL ++ +S E +GL +VG++H++
Sbjct: 541 LLGGTYEEEDKVLKICSAEPCNSLSTGLQCEMDPVSQTQASEVLGVKGLSVVGWYHSHPA 600
Query: 91 FD 92
FD
Sbjct: 601 FD 602
>sp|Q8NXN2|53DR_STAAW Putative 5'(3')-deoxyribonucleotidase OS=Staphylococcus aureus
(strain MW2) GN=MW0687 PE=3 SV=1
Length = 180
Score = 30.8 bits (68), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 24 KTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHY 74
K A+NG L V P++D ++ P F HL ++P + + + EHY
Sbjct: 34 KMEALNGQKLKHVIPEHDGLITEVLREPGFFRHLKVMPYAQEVVKKLTEHY 84
>sp|Q6GBA5|53DR_STAAS Putative 5'(3')-deoxyribonucleotidase OS=Staphylococcus aureus
(strain MSSA476) GN=SAS0690 PE=3 SV=1
Length = 180
Score = 30.8 bits (68), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 24 KTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHY 74
K A+NG L V P++D ++ P F HL ++P + + + EHY
Sbjct: 34 KMEALNGQKLKHVIPEHDGLITEVLREPGFFRHLKVMPYAQEVVKKLTEHY 84
>sp|Q5HHU8|53DR_STAAC Putative 5'(3')-deoxyribonucleotidase OS=Staphylococcus aureus
(strain COL) GN=SACOL0785 PE=3 SV=1
Length = 180
Score = 30.8 bits (68), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 24 KTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHY 74
K A+NG L V P++D ++ P F HL ++P + + + EHY
Sbjct: 34 KMEALNGQKLKHVIPEHDGLITEVLREPGFFRHLKVMPYAQEVVKKLTEHY 84
>sp|Q9QXK3|COPG2_MOUSE Coatomer subunit gamma-2 OS=Mus musculus GN=Copg2 PE=2 SV=1
Length = 871
Score = 30.4 bits (67), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 3/96 (3%)
Query: 106 HICRYFPQCAVLLLDNKKLEALPKGKDRSPVMQLYIRDASKNWKLVGS---DGGCQLLTK 162
H+C + C +L K L L K R+PV YIR L L K
Sbjct: 438 HLCEFIEDCEHTVLATKILHLLGKEGPRTPVPSKYIRFIFNRVVLENEAVRAAAVSALAK 497
Query: 163 EPAANVVLMDYISSEKWQDVVDFDDHLDDISKDWLN 198
A N L+ I + ++D DD + D + +LN
Sbjct: 498 FGAQNESLLPSILVLLQRCMMDTDDEVRDRATFYLN 533
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,608,299
Number of Sequences: 539616
Number of extensions: 3296228
Number of successful extensions: 6796
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 6761
Number of HSP's gapped (non-prelim): 33
length of query: 203
length of database: 191,569,459
effective HSP length: 112
effective length of query: 91
effective length of database: 131,132,467
effective search space: 11933054497
effective search space used: 11933054497
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)