Query 028839
Match_columns 203
No_of_seqs 115 out of 152
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 04:49:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028839.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028839hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o95_A 26S proteasome non-ATPa 99.8 4.4E-18 1.5E-22 139.5 12.6 122 6-142 10-141 (187)
2 4e0q_A COP9 signalosome comple 99.1 1E-09 3.6E-14 86.6 11.5 111 5-123 7-125 (141)
3 4b4t_V 26S proteasome regulato 99.0 3.3E-09 1.1E-13 93.5 13.7 125 6-142 27-158 (306)
4 2znr_A AMSH-like protease; met 98.5 1.9E-06 6.4E-11 70.3 12.4 114 3-123 7-125 (178)
5 2kks_A Uncharacterized protein 98.1 2.3E-05 7.9E-10 61.3 11.1 124 6-150 2-130 (146)
6 3rzv_A STAM-binding protein; u 98.1 1.5E-05 5E-10 66.9 9.5 108 6-122 44-157 (211)
7 4b4t_U RPN8, 26S proteasome re 98.0 0.00011 3.7E-09 65.2 13.8 109 6-122 8-126 (338)
8 2kcq_A MOV34/MPN/PAD-1 family; 98.0 2.5E-05 8.7E-10 61.5 8.4 103 6-119 1-110 (153)
9 1oi0_A AF2198, hypothetical pr 97.6 0.00066 2.2E-08 51.5 10.5 98 2-120 1-98 (124)
10 3uem_A Protein disulfide-isome 29.5 2.1E+02 0.0073 23.6 8.2 65 68-142 26-90 (361)
11 3bvp_A INT, TP901-1 integrase; 24.6 2E+02 0.0068 20.7 7.1 62 63-125 23-84 (138)
12 2lco_A WALP19-P8 peptide; prol 22.6 22 0.00077 19.3 0.4 15 56-70 4-18 (26)
No 1
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Probab=99.76 E-value=4.4e-18 Score=139.53 Aligned_cols=122 Identities=20% Similarity=0.265 Sum_probs=100.3
Q ss_pred eEEeHHHHHHHHhhhhcCC----CCceeEEEeeecCCCCCCceEEEeeeecccCCCCcch---HH--HHHHHHHHHHHhh
Q 028839 6 YELSQNAYIKLVLHARKHK----TAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLP---NL--EISLIMIEEHYSA 76 (203)
Q Consensus 6 v~is~~AY~K~~LHAaKyP----~~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~~~~LsP---ml--EvAL~qvd~~~~~ 76 (203)
|.|++.++.||+.|+.|+| ...|+|+|||+..+ +.++|+||+||.|......| ++ |....+++.+.+.
T Consensus 10 V~i~plvllkI~~H~~r~~~~~~~~~V~G~LLG~~~~---~~v~V~~~f~lp~~~~~~~~~~~~~d~ey~~~m~~~~~~v 86 (187)
T 2o95_A 10 VVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQK---KVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKV 86 (187)
T ss_dssp EEECHHHHHHHHHHHHHHHHTTCCSCCEEEEEEEESS---SEEEEEEEEEECEEECSSCTTSEEECHHHHHHHHHHHHTT
T ss_pred EEEchHHHHHHHHHHhhhcccCCCcEEEEEEEEEEcC---CEEEEEEEEEeCCcccCCCcchhhcCHHHHHHHHHHHHHh
Confidence 8999999999999999984 68999999998753 48999999999998766655 44 8899999998876
Q ss_pred c-CCeEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeCccccccccCCCCCCcEEEEEe
Q 028839 77 Q-GLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLLDNKKLEALPKGKDRSPVMQLYIR 142 (203)
Q Consensus 77 ~-~l~IvGyY~Ane~~~d~~~~~~a~kIa~kI~~~~~~a~~l~ldn~kl~~~~~~~~~~~~l~~~~~ 142 (203)
+ ++.||||||++...++.+ ..|++.+++.++++++|++|..+... ...+.+|..
T Consensus 87 ~~~~~iVGWY~s~~~~s~~d-----~~i~~~~~~~~~~~v~Livd~~~~~~-------~l~i~ay~~ 141 (187)
T 2o95_A 87 NARERIVGWYHTGPKLHKND-----IAINELMKRYCPNSVLVIIDVKPKDL-------GLPTEAYIS 141 (187)
T ss_dssp SSSCEEEEEEECCSSCCTTH-----HHHHHHHTTTCTTCEEEEECCCTTC--------CCSEEEEEE
T ss_pred CCCCCEEEEEcCCCcCCccc-----HHHHHHHHhcCCCCEEEEECCCCCCC-------CcCeEEEEE
Confidence 5 899999999998775432 34788888889999999999876421 245788865
No 2
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=99.08 E-value=1e-09 Score=86.65 Aligned_cols=111 Identities=16% Similarity=0.197 Sum_probs=83.6
Q ss_pred ceEEeHHHHHHHHhhhhcC-----CCCceeEEEeeecCCCCCCceEEEeeeecccCCCC--cchHHHHHHHHHHHHHhh-
Q 028839 5 KYELSQNAYIKLVLHARKH-----KTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLG--LLPNLEISLIMIEEHYSA- 76 (203)
Q Consensus 5 ~v~is~~AY~K~~LHAaKy-----P~~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~~~~--LsPmlEvAL~qvd~~~~~- 76 (203)
.|.|++.+..||+=|+.+- ....|.|+|||...+ .+++|+||.|+-|.... ...-.|-...+.+.+-+-
T Consensus 7 ~V~ihplvll~I~dH~~R~~~~~g~~~~V~G~LLG~~~~---~~veV~nsF~~p~~~~~~~~~~d~~y~~~m~~~~k~v~ 83 (141)
T 4e0q_A 7 TISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKG---RNIEIMNSFELKTDVIGDETVINKDYYNKKEQQYKQVF 83 (141)
T ss_dssp EEEECHHHHHHHHHHHHCC------CCEEEEEEEEEEET---TEEEEEEEEECCEEEETTEEEECHHHHHHHHHHHHHHS
T ss_pred EEEEecHHHHHHHHHHhhhcccCCCCcEEEEEEEEEEeC---CEEEEEEEEEecccCCCCceeecHHHHHHHHHHHHHhC
Confidence 4899999999999999884 235799999998744 58999999999997421 234457777788877664
Q ss_pred cCCeEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeCcc
Q 028839 77 QGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLLDNKK 123 (203)
Q Consensus 77 ~~l~IvGyY~Ane~~~d~~~~~~a~kIa~kI~~~~~~a~~l~ldn~k 123 (203)
.+..|||||+.... +++.-..|-+.+.+.++++++|++|-.+
T Consensus 84 ~~e~iVGWY~s~~~-----~~~~d~~i~~~~~~~~~~pV~L~~Dp~~ 125 (141)
T 4e0q_A 84 SDLDFIGWYTTGDN-----PTADDIKIQRQIAAINECPIMLQLNPLS 125 (141)
T ss_dssp TTCEEEEEEEEEC------------CHHHHHHHTTCCCEEEEESCSC
T ss_pred CCccEEEEEeCCCC-----CCcchHHHHHHHHHHCCCCEEEEECCCc
Confidence 56999999998653 3444457888888999999999999654
No 3
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.03 E-value=3.3e-09 Score=93.46 Aligned_cols=125 Identities=18% Similarity=0.261 Sum_probs=90.4
Q ss_pred eEEeHHHHHHHHhhhhcCCCCceeEEEeeecCCCCCCceEEEeeeecccCCCC-----cchHHHHHHHHHHHHHhh--cC
Q 028839 6 YELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLG-----LLPNLEISLIMIEEHYSA--QG 78 (203)
Q Consensus 6 v~is~~AY~K~~LHAaKyP~~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~~~~-----LsPmlEvAL~qvd~~~~~--~~ 78 (203)
|.||+.|..||+.||..-....|.|+|||+..++ .++.|+||+|+=|.... ..|..+ ......+++ .+
T Consensus 27 V~is~lallkm~~Ha~~~~~~eV~GlLlG~~~~~--~~v~Vt~~f~~P~~~~~~~v~~~d~~y~---~~m~~~~~~v~~~ 101 (306)
T 4b4t_V 27 VYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDD--YTVNVVDVFAMPQSGTGVSVEAVDDVFQ---AKMMDMLKQTGRD 101 (306)
T ss_dssp EEECHHHHHHHHHHTCSCSSSCCEEEEEEEEETT--TEEEEEEEECCCCEESSSCEECCCHHHH---HHHHHHHHHHSCC
T ss_pred EEEeHHHHHHHHHHhcCCCCceEEEEEeeEEcCC--eEEEEEEEEeCCcCCCCCchhcCCHHHH---HHHHHHHHHhCCC
Confidence 8999999999999998877789999999975444 57999999999776432 333222 122223344 44
Q ss_pred CeEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeCccccccccCCCCCCcEEEEEe
Q 028839 79 LGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLLDNKKLEALPKGKDRSPVMQLYIR 142 (203)
Q Consensus 79 l~IvGyY~Ane~~~d~~~~~~a~kIa~kI~~~~~~a~~l~ldn~kl~~~~~~~~~~~~l~~~~~ 142 (203)
..+|||||....+. .-++.+-...-..-+...+.++.|++|-.+-.. +...+.+|..
T Consensus 102 ~~vVGWYhShP~~~-~~~S~~Di~tq~~yQ~~~~~~V~lV~Dp~~t~~------G~~~i~Afr~ 158 (306)
T 4b4t_V 102 QMVVGWYHSHPGFG-CWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSVK------GKVVIDAFRL 158 (306)
T ss_dssp CCCSEEEEECCSSS-CCCCHHHHHHHHHHHHHCSSCEEEEECSSSSSS------CSSCEEEEEC
T ss_pred cceeeEEecCCCCC-CcCCHHHHHHHHHHHhcCCCcEEEEECCCcCCC------CceeeeEEEe
Confidence 88999999987665 557777777777777888899999999765422 2344666643
No 4
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=98.49 E-value=1.9e-06 Score=70.30 Aligned_cols=114 Identities=14% Similarity=0.111 Sum_probs=82.1
Q ss_pred ccc-eEEeHHHHHHHHhhhhc-CCC-CceeEEEeeecCCCCCCceEEEeeeecccCCCCcc--hHHHHHHHHHHHHHhhc
Q 028839 3 ELK-YELSQNAYIKLVLHARK-HKT-AAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLL--PNLEISLIMIEEHYSAQ 77 (203)
Q Consensus 3 ~M~-v~is~~AY~K~~LHAaK-yP~-~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~~~~Ls--PmlEvAL~qvd~~~~~~ 77 (203)
++. |.|+...+.||+-||-. ||. ..|+|+|+|+... +...|++++|+=-....-+ .+-+. .+ -.+....
T Consensus 7 ~~~~v~i~~~~l~k~l~hA~~~~~~~~EvcGlL~G~~~~---~~~~V~~v~~~pq~~t~~~~~~~~~~--e~-~~~~~~~ 80 (178)
T 2znr_A 7 GLRCVVLPEDLCHKFLQLAESNTVRGIETCGILCGKLTH---NEFTITHVIVPKQSAGPDYCDMENVE--EL-FNVQDQH 80 (178)
T ss_dssp SCCCEEEETTHHHHHHHHHHHHHTTTCCCEEEEEEEEET---TEEEEEEEEECCEEEETTEEEECCHH--HH-HHHHHHH
T ss_pred CcEEEEECHHHHHHHHHHHHhCCCCCceEEEEEeeEecC---CCeEEEEEEeCCcCCCCCeeccCCHH--HH-HHHHHhC
Confidence 344 89999999999999986 564 7888999998754 3678899987653221111 01011 11 1235678
Q ss_pred CCeEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeCcc
Q 028839 78 GLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLLDNKK 123 (203)
Q Consensus 78 ~l~IvGyY~Ane~~~d~~~~~~a~kIa~kI~~~~~~a~~l~ldn~k 123 (203)
|+.+||+||...... ..||+.-...+-+.+...+.++.++++-.+
T Consensus 81 ~l~~vGwyHSHP~~~-~~pS~~Dv~tq~~yq~~~~~~v~iIvsp~~ 125 (178)
T 2znr_A 81 DLLTLGWIHTHPTQT-AFLSSVDLHTHCSYQLMLPEAIAIVCSPKH 125 (178)
T ss_dssp TCEEEEEEEECSSSC-SCCCHHHHHHHHHHHHHCTTCEEEEEEGGG
T ss_pred CCEEEEEEeCCCCCC-CCCCHHHHHHHHHHHhhcCCEEEEEEcCCC
Confidence 999999999975533 678988888888888888999999988543
No 5
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=98.14 E-value=2.3e-05 Score=61.27 Aligned_cols=124 Identities=16% Similarity=0.257 Sum_probs=82.2
Q ss_pred eEEeHHHHHHHHhhhhcCCCCceeEEEeeecCCCCCCceEEEeeeecccCC-----CCcchHHHHHHHHHHHHHhhcCCe
Q 028839 6 YELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSH-----LGLLPNLEISLIMIEEHYSAQGLG 80 (203)
Q Consensus 6 v~is~~AY~K~~LHAaKyP~~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~~-----~~LsPmlEvAL~qvd~~~~~~~l~ 80 (203)
+.|+..++.+|+-||.+-.-..++|+|+|+... ....|++++|+=-.. ....|. .+..+...++..|+.
T Consensus 2 l~i~~~~l~~i~~ha~~~~p~E~cGlL~G~~~~---~~~~v~~~~p~~n~~~~~~~f~~dp~---~~~~~~~~~~~~g~~ 75 (146)
T 2kks_A 2 ITLTKKQMEEMLAHARQALPNEACGLLGGRRDG---DDRWVERVYPLNNLDQSPEHFSMDPR---EQLTAVKDMRKNGWV 75 (146)
T ss_dssp EEEEHHHHHHHHHHHHHHTTSCEEEEEEEEEET---TEEEEEEEECCCCCSCCSSSCCCCHH---HHHHHHHHHHHHTCE
T ss_pred EEECHHHHHHHHHHHHhcCCcceEEEEEEEEcC---CCcEEEEEEECCCcCCCCceEEECHH---HHHHHHHHHHHCCCE
Confidence 689999999999999984347999999998643 357899999985221 223443 334444566778999
Q ss_pred EEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeCccccccccCCCCCCcEEEEEecCCCCeEE
Q 028839 81 IVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLLDNKKLEALPKGKDRSPVMQLYIRDASKNWKL 150 (203)
Q Consensus 81 IvGyY~Ane~~~d~~~~~~a~kIa~kI~~~~~~a~~l~ldn~kl~~~~~~~~~~~~l~~~~~~~~~~W~~ 150 (203)
+||+||..... ...||..-.+.+ ..++.+.+++... ....+.+..|...++ ++.+
T Consensus 76 ivG~~HSHP~~-~~~PS~~D~~~~-----~~~~~~~lIvs~~--------~~~~~~~~af~~~~~-~~~e 130 (146)
T 2kks_A 76 MLGNFHSHPAT-PARPSAEDKRLA-----FDPSLSYLIISLA--------EPQKPVCKSFLIKKD-GVDE 130 (146)
T ss_dssp EEEEEEEESSS-CSSCCHHHHTTC-----CSSSCEEEEEECS--------CSSSCEEEEEEECSS-CEEE
T ss_pred EEEEEeCCCcC-CCCCCHHHHHhh-----hcCCCeEEEEEcc--------CCCceEEEEEEEeCC-eEEE
Confidence 99999998653 356775544322 2356665555422 112356788877553 6654
No 6
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=98.09 E-value=1.5e-05 Score=66.90 Aligned_cols=108 Identities=16% Similarity=0.156 Sum_probs=80.1
Q ss_pred eEEeHHHHHHHHhhhhcC-CC-CceeEEEeeecCCCCCCceEEEeeeecccCCCC----cchHHHHHHHHHHHHHhhcCC
Q 028839 6 YELSQNAYIKLVLHARKH-KT-AAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLG----LLPNLEISLIMIEEHYSAQGL 79 (203)
Q Consensus 6 v~is~~AY~K~~LHAaKy-P~-~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~~~~----LsPmlEvAL~qvd~~~~~~~l 79 (203)
|.|+...+.|++-||-.. |. ..|+|+|+|+..+ +..+|++++.+.-.... +....| +. .|....|+
T Consensus 44 v~Ipk~ll~kfL~~A~~~tp~~~EvcGlL~Gk~~~---~~~~I~~v~~ppq~gt~~~v~~~~~~e----~~-~~~~~~~l 115 (211)
T 3rzv_A 44 VVVPGRLCPQFLQLASANTARGVATCGILCGKLMR---NEFTITHVLIPKQSAGSDYCNTENEEE----LF-LIQDQQGL 115 (211)
T ss_dssp EEEETTHHHHHHHHHHHHHHTTCCCEEEEEEEEET---TEEEEEEEEECCEEECSSCEEECCHHH----HH-HHHHHHTC
T ss_pred EEECHHHHHHHHHHHHhCCCCCceEEEEEEeEcCC---CCEEEEEEEeCCccCCCCceeccChHH----HH-HHHhhCCC
Confidence 889999999999999884 53 6888999998654 47889999855433222 111111 11 23345899
Q ss_pred eEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeCc
Q 028839 80 GIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLLDNK 122 (203)
Q Consensus 80 ~IvGyY~Ane~~~d~~~~~~a~kIa~kI~~~~~~a~~l~ldn~ 122 (203)
.+||+||.... ....+|+.-.....+.+...+..+.|++|-.
T Consensus 116 ~~vGWyHSHP~-~~~~pS~~Dl~tq~~~q~~~~~~I~IVvsP~ 157 (211)
T 3rzv_A 116 ITLGWIHTHPT-QTAFLSSVDLHTHCSYQMMLPESVAIVCSPK 157 (211)
T ss_dssp EEEEEEEECTT-SCSCCCHHHHHHHHHHHHHCTTCEEEEEETT
T ss_pred EEEEEEeCCCC-CCCCCCHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 99999998654 3367899988888899989999999999844
No 7
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.99 E-value=0.00011 Score=65.22 Aligned_cols=109 Identities=16% Similarity=0.234 Sum_probs=76.8
Q ss_pred eEEeHHHHHHHHhhhhc-CC--CCceeEEEeeecCCCCCCceEEEeeeecccCCCCcch-----HHHHHHHHHHHHHh-h
Q 028839 6 YELSQNAYIKLVLHARK-HK--TAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLP-----NLEISLIMIEEHYS-A 76 (203)
Q Consensus 6 v~is~~AY~K~~LHAaK-yP--~~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~~~~LsP-----mlEvAL~qvd~~~~-~ 76 (203)
|.|.+.+..+|+=|..+ .+ ...|.|.|||...+ ..|+|++|.|+-|....-.+ =.+-.-.+.+.|-+ -
T Consensus 8 V~vhPlVll~I~dH~~R~~~~~~~rViG~LLG~~~~---~~veV~nsF~~p~~e~~~~~~~~~~D~~y~~~m~~~~kkV~ 84 (338)
T 4b4t_U 8 VTIAPLVLLSALDHYERTQTKENKRCVGVILGDANS---STIRVTNSFALPFEEDEKNSDVWFLDHNYIENMNEMCKKIN 84 (338)
T ss_dssp EEECHHHHHHHHHHHHHHTTTCCSCCEEEEEEEECS---SEEEEEEEEECCEEECSSSTTCEEECHHHHHHHHHHHHHHC
T ss_pred EEEecHHHHHHHHHHHHhhcCCCCeEEEEEEeEEcC---CEEEEEEEEEeccccCCCCCccccccHHHHHHHHHHHhhcC
Confidence 89999999999999765 22 35799999998644 58999999999886432211 12333344444433 2
Q ss_pred cCCeEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCC-CcEEEEEeCc
Q 028839 77 QGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFP-QCAVLLLDNK 122 (203)
Q Consensus 77 ~~l~IvGyY~Ane~~~d~~~~~~a~kIa~kI~~~~~-~a~~l~ldn~ 122 (203)
....|||||+.... +.+....|-+-+.+.+. +++++++|..
T Consensus 85 ~~e~iVGWY~tg~~-----~~~~d~~Ih~~~~~~~~~~pi~l~~d~~ 126 (338)
T 4b4t_U 85 AKEKLIGWYHSGPK-----LRASDLKINELFKKYTQNNPLLLIVDVK 126 (338)
T ss_dssp CSCEEEEEEECCSS-----CCSTHHHHHHHHGGGCCSCCCEEEECSC
T ss_pred ccCCEEEEEecCCC-----CCccHHHHHHHHHhccCCCcEEEEecCC
Confidence 56999999997533 44555678888888775 6777777754
No 8
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=97.98 E-value=2.5e-05 Score=61.50 Aligned_cols=103 Identities=16% Similarity=0.231 Sum_probs=70.9
Q ss_pred eEEeHHHHHHHHhhhhcCCCCceeEEEeeecCCCCCCceEEEeeeecccC-------CCCcchHHHHHHHHHHHHHhhcC
Q 028839 6 YELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHS-------HLGLLPNLEISLIMIEEHYSAQG 78 (203)
Q Consensus 6 v~is~~AY~K~~LHAaKyP~~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~-------~~~LsPmlEvAL~qvd~~~~~~~ 78 (203)
+.|+..++.+|+-||.+---..++|+|+|+...+ ..+.|++++|+-=. ...+.|. .+..+...++..|
T Consensus 1 l~i~~~~l~~i~~ha~~~~p~E~cGlL~G~~~~~--~~~~v~~~~p~~n~~~~~~~~~f~~dp~---~~~~~~~~~~~~g 75 (153)
T 2kcq_A 1 MKTTPDILDQIRVHGADAYPEEGCGFLLGTVTDD--GDNRVAALHRATNRRSEQRTRRYELTAD---DYRAADAAAQEQG 75 (153)
T ss_dssp CBCCHHHHHHHHHHHHHHTTSCCCEEEEEEECTT--SCEEEEEEEESSCCCCCCCSCCSSCCCC---SHHHHHHHHHHHT
T ss_pred CEeCHHHHHHHHHHHHhcCCcceEEEEEEeeccC--CCeEEEEEEECCCCCCCCCCcEEEECHH---HHHHHHHHHHHCC
Confidence 3689999999999999843379999999986523 46889999999643 1224443 2334455667789
Q ss_pred CeEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCcEEEEE
Q 028839 79 LGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLL 119 (203)
Q Consensus 79 l~IvGyY~Ane~~~d~~~~~~a~kIa~kI~~~~~~a~~l~l 119 (203)
+.|||+||..... ...||..-..-+ ..+.++.+++
T Consensus 76 ~~ivG~yHSHP~~-~~~PS~~D~~~~-----~~~~~~~lIv 110 (153)
T 2kcq_A 76 LDVVGVYHSHPDH-PARPSATDLEEA-----TFPGFTYVIV 110 (153)
T ss_dssp CEEEEEEEECSSS-SSSCCHHHHHTC-----CCTTSEEEEE
T ss_pred CeEEEEEeCCCCC-CCCCCHHHHHhh-----hcCCCeEEEE
Confidence 9999999998753 356776543322 2356655555
No 9
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A
Probab=97.59 E-value=0.00066 Score=51.47 Aligned_cols=98 Identities=11% Similarity=0.045 Sum_probs=62.7
Q ss_pred CccceEEeHHHHHHHHhhhhcCCCCceeEEEeeecCCCCCCceEEEeeeecccCCCCcchHHHHHHHHHHHHHhhcCCeE
Q 028839 2 GELKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHYSAQGLGI 81 (203)
Q Consensus 2 ~~M~v~is~~AY~K~~LHAaKyP~~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~~~~LsPmlEvAL~qvd~~~~~~~l~I 81 (203)
|+| +.|+..++.+|+-||.+---..++|+|+|+. -.|++.+|+= .. +-.|-.+.-. .....|+.|
T Consensus 1 ~~~-v~i~~~~l~~i~~ha~~~~P~E~cGlL~g~~-------~~v~~~~~~p-~~-~~~~~~~f~~-----~~~~~~~~i 65 (124)
T 1oi0_A 1 GSS-MKISRGLLKTILEAAKSAHPDEFIALLSGSK-------DVMDELIFLP-FV-SGSVSAVIHL-----DMLPIGMKV 65 (124)
T ss_dssp CCS-CEECHHHHHHHHHHHHHHTTSCCEEEEEEST-------TEECEEEECC-CC-C------------------CCCEE
T ss_pred CCE-EEEcHHHHHHHHHHHHhcCCCeeEEEEeccc-------CEEEEEEECC-CC-CCCcCceeee-----eeccCCCEE
Confidence 455 7899999999999997654469999999953 1778998886 43 2222211111 234588999
Q ss_pred EEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCcEEEEEe
Q 028839 82 VGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLLD 120 (203)
Q Consensus 82 vGyY~Ane~~~d~~~~~~a~kIa~kI~~~~~~a~~l~ld 120 (203)
||.||.... ....||..-.+-+. .+++..+++.
T Consensus 66 vG~~HSHP~-~~~~PS~~D~~~~~-----~~~~~~lIvs 98 (124)
T 1oi0_A 66 FGTVHSHPS-PSCRPSEEDLSLFT-----RFGKYHIIVC 98 (124)
T ss_dssp EEEEEEESS-SCCSCCHHHHHHHH-----HSCSEEEEEE
T ss_pred EEEEEECcC-CCCccCHHHHHhhh-----cCCCEEEEEE
Confidence 999999865 33667766554443 2566666654
No 10
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=29.51 E-value=2.1e+02 Score=23.57 Aligned_cols=65 Identities=11% Similarity=0.097 Sum_probs=37.6
Q ss_pred HHHHHHHhhcCCeEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeCccccccccCCCCCCcEEEEEe
Q 028839 68 IMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLLDNKKLEALPKGKDRSPVMQLYIR 142 (203)
Q Consensus 68 ~qvd~~~~~~~l~IvGyY~Ane~~~d~~~~~~a~kIa~kI~~~~~~a~~l~ldn~kl~~~~~~~~~~~~l~~~~~ 142 (203)
.+++.+.+.....+||||...+. -..+.-.++++.+.+--+....+.++.. +-.-..|.+.+|.+
T Consensus 26 ~~~~~~~~~~~~~vvgff~~~~~--------~~~~~f~~~A~~~~~~~F~~t~~~~v~~--~~~v~~~~i~lfk~ 90 (361)
T 3uem_A 26 AAAESLVESSEVAVIGFFKDVES--------DSAKQFLQAAEAIDDIPFGITSNSDVFS--KYQLDKDGVVLFKK 90 (361)
T ss_dssp HHHHHHHHTSSEEEEEECSCTTS--------HHHHHHHHHHHHCSSSCEEEECCHHHHH--HTTCSSSEEEEEES
T ss_pred HHHHHHHhcCCcEEEEEEcCCCc--------hHHHHHHHHHhcCCCceEEEECcHHHHH--HhCCCCCeEEEEEe
Confidence 45677777889999999973221 1234455555555554444556655532 11223467888865
No 11
>3bvp_A INT, TP901-1 integrase; DNA recombinase, recombination; 2.10A {Lactococcus phage tp901-1}
Probab=24.58 E-value=2e+02 Score=20.72 Aligned_cols=62 Identities=11% Similarity=0.044 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeCcccc
Q 028839 63 LEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLLDNKKLE 125 (203)
Q Consensus 63 lEvAL~qvd~~~~~~~l~IvGyY~Ane~~~d~~~~~~a~kIa~kI~~~~~~a~~l~ldn~kl~ 125 (203)
+|-=...+..||+.+|+.+++.|.-....+.+.--|--.++.+.+.+.--+ ++++-+-.+|.
T Consensus 23 l~~Q~~~l~~~a~~~g~~~~~~~~D~g~Sg~~~~Rp~l~~ll~~~~~g~~d-~lvv~~ldRl~ 84 (138)
T 3bvp_A 23 IDEQIDRLTKYAEAMGWQVSDTYTDAGFSGAKLERPAMQRLINDIENKAFD-TVLVYKLDRLS 84 (138)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEEETCCSSSSCCHHHHHHHHGGGGTSCS-EEEESSHHHHC
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHhCCCC-EEEEEeCCccc
Confidence 455556778899999999999997432111111235555666666554223 45554444554
No 12
>2lco_A WALP19-P8 peptide; proline distortion, transmembrane, membrane protein; HET: ETA; NMR {Synthetic}
Probab=22.63 E-value=22 Score=19.34 Aligned_cols=15 Identities=33% Similarity=0.576 Sum_probs=11.8
Q ss_pred CCCcchHHHHHHHHH
Q 028839 56 HLGLLPNLEISLIMI 70 (203)
Q Consensus 56 ~~~LsPmlEvAL~qv 70 (203)
|+.|+|.+-+||++-
T Consensus 4 wlalapalalalalw 18 (26)
T 2lco_A 4 WLALAPALALALALW 18 (26)
T ss_pred HHHHhHHHHHHHHHH
Confidence 467899988888764
Done!