BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028840
(203 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O04616|Y4115_ARATH Uncharacterized protein At4g01150, chloroplastic OS=Arabidopsis
thaliana GN=At4g01150 PE=1 SV=1
Length = 164
Score = 118 bits (295), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/103 (55%), Positives = 82/103 (79%), Gaps = 3/103 (2%)
Query: 99 AVPKEESPVDGLTNELLDNLKIKFDS-EDKYSLVLYGTGALLALWLTTVVVGAIDSIPLF 157
A +E S +D TNEL+ +LK K+D E+K ++++YG GA++A+WL+++VVGAI+S+PL
Sbjct: 63 ASSEETSSID--TNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLL 120
Query: 158 PKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLGS 200
PK+ME+VGLGYT WF +RYLLFK +R ELA IE LK+++ GS
Sbjct: 121 PKVMELVGLGYTGWFVYRYLLFKSSRKELAEDIESLKKKIAGS 163
>sp|Q8LCA1|TMP14_ARATH Thylakoid membrane phosphoprotein 14 kDa, chloroplastic
OS=Arabidopsis thaliana GN=TMP14 PE=1 SV=2
Length = 174
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 53/77 (68%)
Query: 125 EDKYSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRD 184
+DKY++ ++ALW + ++ AID +PL P ++E+VG+GYT WF+++ L+FK +R+
Sbjct: 98 DDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDRE 157
Query: 185 ELATKIEELKQQVLGSN 201
L K++ + +LGS+
Sbjct: 158 ALFEKVKSTYKDILGSS 174
>sp|Q119Z5|SYE_TRIEI Glutamate--tRNA ligase OS=Trichodesmium erythraeum (strain IMS101)
GN=gltX PE=3 SV=1
Length = 881
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 68/126 (53%), Gaps = 21/126 (16%)
Query: 95 SVATAVPKEESPVDGLTNELLD----------NLKIKFDSEDKYSLV---------LYGT 135
V T++ ++ PVD +TN+ ++ + I F+ D + + L+G
Sbjct: 753 QVETSILDDQKPVDTVTNQTVEVEQPNKIKEQFINIFFNFPDYINQLYQQYQGQLKLFGW 812
Query: 136 GALLALWLT--TVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEEL 193
AL+ L T VV+ A+D IP+ + E++G+ Y +WF +RYLL + NR EL KIE +
Sbjct: 813 LALVILTFTFMAVVIEALDGIPILSIIFELIGVIYLVWFVYRYLLKRSNRQELLDKIENI 872
Query: 194 KQQVLG 199
K+++ G
Sbjct: 873 KREIFG 878
>sp|Q8YX97|SYV_NOSS1 Valine--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=valS PE=3 SV=1
Length = 1014
Score = 37.7 bits (86), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 129 SLVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRDELAT 188
LV+ G L+ L + V +D++P E+VGLGY+ WF R LL R
Sbjct: 849 GLVIAG---LVFLRVALAVADTVDNVPFLGTFFEIVGLGYSAWFVTRNLLSTPARKRFLA 905
Query: 189 KI 190
K
Sbjct: 906 KF 907
>sp|P74857|SSAN_SALTY Probable secretion system apparatus ATP synthase SsaN OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=ssaN PE=3 SV=1
Length = 433
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 110 LTNELLDNLKIKFDSEDKYSL---VLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGL 166
+ NEL+ L++K+ D Y + + LL WL V +G + I +L EVVG+
Sbjct: 1 MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEELAEVVGI 60
>sp|B2A1G4|HEM1_NATTJ Glutamyl-tRNA reductase OS=Natranaerobius thermophilus (strain ATCC
BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=hemA PE=3 SV=1
Length = 458
Score = 31.2 bits (69), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 81 AEDVPAVEKNVYNESVATAVPKEESPVDGLTNELLDN------LKIK-FDSEDKYSLVLY 133
AEDV +E Y++ + PKE+ VD LT +++ L+IK F EDK L +
Sbjct: 354 AEDVRKMELEKYHKKLKNLSPKEQEAVDKLTKSIVNKILKEPVLRIKEFAVEDKSELYMA 413
Query: 134 GTGALLAL 141
L L
Sbjct: 414 TLAQLFDL 421
>sp|P65028|Y2626_MYCBO Uncharacterized protein Mb2626 OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=Mb2626 PE=4 SV=1
Length = 81
Score = 30.0 bits (66), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 40 QTTVSRSGILYYTNPLPKATSEETS-SGTDQYVVDKRDGATAAEDVPAVEKNVYNESVAT 98
+TT+ +G L +PK E G DQ + +RDG E P + V SV
Sbjct: 2 RTTIDVAGRLV----IPKRIRERLGLRGNDQVEITERDGRIEIEPAPTGVELVREGSVLV 57
Query: 99 AVPKEESPVDGLTNELL 115
A P E P+ LT+E++
Sbjct: 58 ARP--ERPLPPLTDEIV 72
>sp|P65027|VPB40_MYCTU Antitoxin VapB40 OS=Mycobacterium tuberculosis GN=vapB40 PE=1 SV=1
Length = 81
Score = 30.0 bits (66), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 40 QTTVSRSGILYYTNPLPKATSEETS-SGTDQYVVDKRDGATAAEDVPAVEKNVYNESVAT 98
+TT+ +G L +PK E G DQ + +RDG E P + V SV
Sbjct: 2 RTTIDVAGRLV----IPKRIRERLGLRGNDQVEITERDGRIEIEPAPTGVELVREGSVLV 57
Query: 99 AVPKEESPVDGLTNELL 115
A P E P+ LT+E++
Sbjct: 58 ARP--ERPLPPLTDEIV 72
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.129 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,301,516
Number of Sequences: 539616
Number of extensions: 2837552
Number of successful extensions: 7137
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 7127
Number of HSP's gapped (non-prelim): 22
length of query: 203
length of database: 191,569,459
effective HSP length: 112
effective length of query: 91
effective length of database: 131,132,467
effective search space: 11933054497
effective search space used: 11933054497
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)