Query 028840
Match_columns 203
No_of_seqs 128 out of 178
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 03:22:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028840.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028840hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02777 photosystem I P subun 100.0 3.8E-34 8.2E-39 238.6 7.3 93 109-201 74-167 (167)
2 PF14159 CAAD: CAAD domains of 100.0 4.5E-30 9.8E-35 194.4 2.8 84 116-199 2-90 (90)
3 PF11364 DUF3165: Protein of u 57.8 2.3 4.9E-05 32.8 -0.9 58 127-184 23-80 (81)
4 PF11351 DUF3154: Protein of u 53.1 7.7 0.00017 30.9 1.3 21 158-178 97-117 (123)
5 TIGR00949 2A76 The Resistance 48.9 4.3 9.4E-05 32.5 -0.7 36 143-178 39-74 (185)
6 PF01810 LysE: LysE type trans 48.8 5.9 0.00013 31.7 0.1 42 143-184 44-85 (191)
7 PRK10520 rhtB homoserine/homos 46.9 4.9 0.00011 33.1 -0.7 40 141-180 55-94 (205)
8 TIGR00948 2a75 L-lysine export 44.8 6.2 0.00014 31.7 -0.4 39 141-179 38-76 (177)
9 PRK10958 leucine export protei 44.5 5.6 0.00012 33.4 -0.7 35 144-178 62-96 (212)
10 PRK10229 threonine efflux syst 41.0 7 0.00015 32.1 -0.7 35 144-178 57-91 (206)
11 PRK09304 arginine exporter pro 36.7 8.9 0.00019 31.9 -0.7 34 145-178 56-89 (207)
12 PRK10323 cysteine/O-acetylseri 27.6 15 0.00032 30.4 -0.8 45 135-179 48-93 (195)
13 PF06716 DUF1201: Protein of u 27.4 47 0.001 23.8 1.8 36 128-183 6-41 (54)
14 PF06072 Herpes_US9: Alphaherp 26.1 2.1E+02 0.0045 21.1 5.0 46 106-151 6-55 (60)
15 PRK07193 fliF flagellar MS-rin 21.9 1.1E+02 0.0024 30.3 3.9 17 109-125 3-19 (552)
16 PF05251 UPF0197: Uncharacteri 20.9 8.6 0.00019 29.3 -3.1 35 155-189 17-51 (77)
No 1
>PLN02777 photosystem I P subunit (PSI-P)
Probab=100.00 E-value=3.8e-34 Score=238.56 Aligned_cols=93 Identities=34% Similarity=0.725 Sum_probs=89.4
Q ss_pred chhHHHHHHhhhhcc-ccCchhhhhHHHHHHHHHHHHHHHHHHhccCCCcccceeeeeeeeeeeehhhhcccccchHHHH
Q 028840 109 GLTNELLDNLKIKFD-SEDKYSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRDELA 187 (203)
Q Consensus 109 ~q~~E~l~~l~~kwd-~edK~av~~~g~gaiVAL~v~~aVL~AID~IPLLp~lLELVGLgYs~WFvyRyLLfke~RqEL~ 187 (203)
.+..|+++.++++|| .|||+++++++++++|++|++.+||+|||+|||+|++||||||||++||+||||+|+++|+||+
T Consensus 74 ~~~~ei~k~~~e~Wd~~EdK~av~~l~~aaiVal~v~~~VL~AId~lPLlP~lLELVGigYs~WF~yRyLLfke~ReeL~ 153 (167)
T PLN02777 74 TELPEIVKTVQEAWDKVEDKYAVSSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLVFKPDREALI 153 (167)
T ss_pred ccHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHhhhhhhhhhhhhHhcCcccHHHHH
Confidence 345799999999999 6999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCC
Q 028840 188 TKIEELKQQVLGSN 201 (203)
Q Consensus 188 ~kI~~lk~~IlG~~ 201 (203)
++|+++|++|+|++
T Consensus 154 ~ki~~lk~~IlG~s 167 (167)
T PLN02777 154 EKIKDTYKEIIGSS 167 (167)
T ss_pred HHHHHHHHHhhCCC
Confidence 99999999999963
No 2
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=99.96 E-value=4.5e-30 Score=194.44 Aligned_cols=84 Identities=49% Similarity=0.878 Sum_probs=73.2
Q ss_pred HHhhhhcc-ccCchhhhhHHH----HHHHHHHHHHHHHHHhccCCCcccceeeeeeeeeeeehhhhcccccchHHHHHHH
Q 028840 116 DNLKIKFD-SEDKYSLVLYGT----GALLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKI 190 (203)
Q Consensus 116 ~~l~~kwd-~edK~av~~~g~----gaiVAL~v~~aVL~AID~IPLLp~lLELVGLgYs~WFvyRyLLfke~RqEL~~kI 190 (203)
++++++|+ ..++|...++++ ++++++|++.+|++|||+|||+|++|||||+||++||+||||+++++||||.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~ii~~iv~l~v~~~vl~aIn~iPll~~llElvGlgyt~wF~~ryLL~~~~R~el~~~i 81 (90)
T PF14159_consen 2 SKLPEYWGEFFDKYKRPLLTIGAIIAVIVALWVSAAVLDAINSIPLLPGLLELVGLGYTGWFVYRYLLFAENRQELLQKI 81 (90)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHhHHHHHHHcChHhHHHHHHHH
Confidence 44555565 355555555444 5599999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcC
Q 028840 191 EELKQQVLG 199 (203)
Q Consensus 191 ~~lk~~IlG 199 (203)
+++|++|+|
T Consensus 82 ~~~k~~i~G 90 (90)
T PF14159_consen 82 QSLKKEILG 90 (90)
T ss_pred HHHHHHhcC
Confidence 999999998
No 3
>PF11364 DUF3165: Protein of unknown function (DUF3165); InterPro: IPR021506 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=57.77 E-value=2.3 Score=32.85 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=49.5
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHhccCCCcccceeeeeeeeeeeehhhhcccccchH
Q 028840 127 KYSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRD 184 (203)
Q Consensus 127 K~av~~~g~gaiVAL~v~~aVL~AID~IPLLp~lLELVGLgYs~WFvyRyLLfke~Rq 184 (203)
|.++=.++..+++++.+..++++.+.-.-+-|-+|=-+|+...++|.+|-+.+=+.|+
T Consensus 23 r~Tln~i~~v~~~vlLivla~ls~~ki~q~P~Eifv~~~Mi~l~y~alrDi~~l~~k~ 80 (81)
T PF11364_consen 23 RGTLNMIGLVGLVVLLIVLAVLSFIKIFQLPPEIFVGLAMIVLGYFALRDISKLSTKK 80 (81)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCcCC
Confidence 4566778888888889999999999988888999999999999999999888766654
No 4
>PF11351 DUF3154: Protein of unknown function (DUF3154); InterPro: IPR021497 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=53.08 E-value=7.7 Score=30.89 Aligned_cols=21 Identities=24% Similarity=0.204 Sum_probs=17.6
Q ss_pred ccceeeeeeeeeeeehhhhcc
Q 028840 158 PKLMEVVGLGYTLWFSWRYLL 178 (203)
Q Consensus 158 p~lLELVGLgYs~WFvyRyLL 178 (203)
.++..|.|+|++++|+.|..-
T Consensus 97 e~lw~Llg~~vlgy~~~Rs~e 117 (123)
T PF11351_consen 97 EPLWWLLGAGVLGYFGARSQE 117 (123)
T ss_pred HHHHHHHHHHHhhhHHHhhHH
Confidence 467799999999999998543
No 5
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=48.92 E-value=4.3 Score=32.53 Aligned_cols=36 Identities=11% Similarity=0.161 Sum_probs=30.1
Q ss_pred HHHHHHHHhccCCCcccceeeeeeeeeeeehhhhcc
Q 028840 143 LTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLL 178 (203)
Q Consensus 143 v~~aVL~AID~IPLLp~lLELVGLgYs~WFvyRyLL 178 (203)
...++-.-++..|.+-..+.++|-.|..|+.||-+.
T Consensus 39 ~~~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~ 74 (185)
T TIGR00949 39 SLLGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLR 74 (185)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677788999999999999999999998664
No 6
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=48.84 E-value=5.9 Score=31.73 Aligned_cols=42 Identities=17% Similarity=0.288 Sum_probs=32.1
Q ss_pred HHHHHHHHhccCCCcccceeeeeeeeeeeehhhhcccccchH
Q 028840 143 LTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRD 184 (203)
Q Consensus 143 v~~aVL~AID~IPLLp~lLELVGLgYs~WFvyRyLLfke~Rq 184 (203)
...++-.-++..|.+-..++++|..|..|+.|+.+..+.+..
T Consensus 44 ~~~g~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~~~~~~ 85 (191)
T PF01810_consen 44 AVFGLSALLKSSPWLFMILKLLGALYLLYLGYKLLRSKFSSK 85 (191)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Confidence 333443344679999999999999999999999987555443
No 7
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=46.95 E-value=4.9 Score=33.12 Aligned_cols=40 Identities=10% Similarity=0.173 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhccCCCcccceeeeeeeeeeeehhhhcccc
Q 028840 141 LWLTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLFK 180 (203)
Q Consensus 141 L~v~~aVL~AID~IPLLp~lLELVGLgYs~WFvyRyLLfk 180 (203)
.-...++-.-++..|.+=.++.++|.+|..|+.+|-+..+
T Consensus 55 ~~~~~Gl~~l~~~~p~~~~~lk~~Ga~YL~~lg~~~~~s~ 94 (205)
T PRK10520 55 VLVGVGLGALFSQSLLAFEVLKWAGAAYLIWLGIQQWRAA 94 (205)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3345566667788999999999999999999999977543
No 8
>TIGR00948 2a75 L-lysine exporter.
Probab=44.83 E-value=6.2 Score=31.75 Aligned_cols=39 Identities=13% Similarity=0.176 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhccCCCcccceeeeeeeeeeeehhhhccc
Q 028840 141 LWLTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLF 179 (203)
Q Consensus 141 L~v~~aVL~AID~IPLLp~lLELVGLgYs~WFvyRyLLf 179 (203)
+-...++-..++..|.+=..+.++|-.|..|..||-+..
T Consensus 38 ~~~~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~~~~r~ 76 (177)
T TIGR00948 38 AAGVFGVAALLAASPILLAVLTWGGALFLLWYGFLAAKT 76 (177)
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555678899999999999999999999988754
No 9
>PRK10958 leucine export protein LeuE; Provisional
Probab=44.49 E-value=5.6 Score=33.40 Aligned_cols=35 Identities=20% Similarity=0.429 Sum_probs=29.1
Q ss_pred HHHHHHHhccCCCcccceeeeeeeeeeeehhhhcc
Q 028840 144 TTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLL 178 (203)
Q Consensus 144 ~~aVL~AID~IPLLp~lLELVGLgYs~WFvyRyLL 178 (203)
..++-.-+...|.+-..+.++|.+|..|+.||-+-
T Consensus 62 ~~G~~~l~~~~p~~~~~l~~~G~~yL~~la~~~~~ 96 (212)
T PRK10958 62 AAGVASLLKATPLLFNVVKYLGAAYLLYLGVKMLR 96 (212)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667788999999999999999999998663
No 10
>PRK10229 threonine efflux system; Provisional
Probab=41.00 E-value=7 Score=32.15 Aligned_cols=35 Identities=14% Similarity=0.259 Sum_probs=29.7
Q ss_pred HHHHHHHhccCCCcccceeeeeeeeeeeehhhhcc
Q 028840 144 TTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLL 178 (203)
Q Consensus 144 ~~aVL~AID~IPLLp~lLELVGLgYs~WFvyRyLL 178 (203)
..++-.-+...|.+-.++.++|..|..|+.|+-+.
T Consensus 57 ~~Gl~~ll~~~p~~~~~l~~~Ga~yLlylg~~~~~ 91 (206)
T PRK10229 57 LLGLHLILEKMAWLHTIIMVGGGLYLCWMGYQMLR 91 (206)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555667788999999999999999999998775
No 11
>PRK09304 arginine exporter protein; Provisional
Probab=36.74 E-value=8.9 Score=31.95 Aligned_cols=34 Identities=15% Similarity=0.298 Sum_probs=28.4
Q ss_pred HHHHHHhccCCCcccceeeeeeeeeeeehhhhcc
Q 028840 145 TVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLL 178 (203)
Q Consensus 145 ~aVL~AID~IPLLp~lLELVGLgYs~WFvyRyLL 178 (203)
.++-.-+...|.+=.++.++|..|..|..|+-+-
T Consensus 56 ~Gl~~Ll~~~p~~~~~l~~~Ga~YLlyLg~~~~r 89 (207)
T PRK09304 56 FGGSALLMQSPWLLALVTWGGVAFLLWYGFGAFK 89 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444457899999999999999999999998764
No 12
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=27.57 E-value=15 Score=30.40 Aligned_cols=45 Identities=20% Similarity=0.411 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHH-HHhccCCCcccceeeeeeeeeeeehhhhccc
Q 028840 135 TGALLALWLTTVVV-GAIDSIPLFPKLMEVVGLGYTLWFSWRYLLF 179 (203)
Q Consensus 135 ~gaiVAL~v~~aVL-~AID~IPLLp~lLELVGLgYs~WFvyRyLLf 179 (203)
.|.++...+..+.+ .-+...|.+=.++.++|..|..|..||-+..
T Consensus 48 ~g~~~~~~~~~~g~~~l~~~~p~~~~vlk~~Ga~YLlyLg~~~~~s 93 (195)
T PRK10323 48 LGFLIVMLLCAGISFSLAVIDPAAVHLLSWAGAAYIVWLAWKIATS 93 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34333333333444 3456889999999999999999999997754
No 13
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=27.41 E-value=47 Score=23.82 Aligned_cols=36 Identities=33% Similarity=0.696 Sum_probs=25.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhccCCCcccceeeeeeeeeeeehhhhcccccch
Q 028840 128 YSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNR 183 (203)
Q Consensus 128 ~av~~~g~gaiVAL~v~~aVL~AID~IPLLp~lLELVGLgYs~WFvyRyLLfke~R 183 (203)
.+.+.+|+|.++-+.+.-++ |-.||+|+.+||..+-
T Consensus 6 Rs~L~~~F~~lIC~Fl~~~~--------------------~F~~F~~Kqilfr~~~ 41 (54)
T PF06716_consen 6 RSYLLLAFGFLICLFLFCLV--------------------VFIWFVYKQILFRNNP 41 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHccCC
Confidence 35667788888777765543 5689999999876543
No 14
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=26.13 E-value=2.1e+02 Score=21.14 Aligned_cols=46 Identities=15% Similarity=0.106 Sum_probs=28.6
Q ss_pred CCcchhHHHHHHhhhhc---cccCchhh-hhHHHHHHHHHHHHHHHHHHh
Q 028840 106 PVDGLTNELLDNLKIKF---DSEDKYSL-VLYGTGALLALWLTTVVVGAI 151 (203)
Q Consensus 106 ~v~~q~~E~l~~l~~kw---d~edK~av-~~~g~gaiVAL~v~~aVL~AI 151 (203)
++++.++++|..++..= ..-.+... .+.++.+++++-++++.++++
T Consensus 6 SDnETA~~FL~RvGr~q~~~r~RrRrc~~~v~~v~~~~~~c~~S~~lG~~ 55 (60)
T PF06072_consen 6 SDNETATEFLRRVGRQQHASRRRRRRCRLAVAIVFAVVALCVLSGGLGAL 55 (60)
T ss_pred cccccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889998886221 11122233 444556667888888888886
No 15
>PRK07193 fliF flagellar MS-ring protein; Reviewed
Probab=21.91 E-value=1.1e+02 Score=30.31 Aligned_cols=17 Identities=47% Similarity=0.743 Sum_probs=12.9
Q ss_pred chhHHHHHHhhhhcccc
Q 028840 109 GLTNELLDNLKIKFDSE 125 (203)
Q Consensus 109 ~q~~E~l~~l~~kwd~e 125 (203)
+.+++++.+++++|..-
T Consensus 3 ~~~~~~~~~l~~~w~~l 19 (552)
T PRK07193 3 GLMNDMLDKLKQKWSPF 19 (552)
T ss_pred hhHHHHHHHHHHHHHhh
Confidence 45678889999988743
No 16
>PF05251 UPF0197: Uncharacterised protein family (UPF0197); InterPro: IPR007915 This family of proteins is functionally uncharacterised, but is thought to be a transmembrane protein.
Probab=20.92 E-value=8.6 Score=29.31 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=24.0
Q ss_pred CCcccceeeeeeeeeeeehhhhcccccchHHHHHH
Q 028840 155 PLFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATK 189 (203)
Q Consensus 155 PLLp~lLELVGLgYs~WFvyRyLLfke~RqEL~~k 189 (203)
|.+.-+|=.+|+.+++||...-....+.++.+.++
T Consensus 17 p~La~vll~iGl~fta~Ffiyevts~k~~r~i~kE 51 (77)
T PF05251_consen 17 PHLAVVLLAIGLFFTAWFFIYEVTSTKKTRSIAKE 51 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHH
Confidence 44455566789999999998888865554444433
Done!