Query 028840
Match_columns 203
No_of_seqs 128 out of 178
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 04:51:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028840.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028840hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fyu_K Ubiquinol-cytochrome C 22.1 76 0.0026 21.8 3.1 34 128-161 19-52 (56)
2 2bai_A Genome polyprotein; zin 17.9 23 0.00078 22.3 -0.3 11 3-13 21-31 (32)
3 2xpp_A IWS1, ECU08_0440; trans 14.5 1.8E+02 0.0062 23.0 4.1 76 127-202 54-143 (145)
4 2amj_A Modulator of drug activ 13.4 45 0.0015 26.3 0.3 43 157-199 162-204 (204)
5 2zjs_E Preprotein translocase 12.6 2.1E+02 0.0072 18.9 3.5 36 128-165 25-60 (60)
6 2x43_S Sherp; membrane protein 12.4 1.3E+02 0.0044 21.6 2.4 22 181-202 37-58 (67)
7 3lcm_A SMU.1420, putative oxid 11.2 52 0.0018 25.7 -0.0 96 100-199 81-190 (196)
8 3rpe_A MDAB, modulator of drug 10.3 1.1E+02 0.0037 25.1 1.7 42 158-199 176-217 (218)
9 2adc_A Polypyrimidine tract-bi 9.6 92 0.0031 24.3 0.9 25 36-62 26-51 (229)
10 3mab_A Uncharacterized protein 8.7 3.5E+02 0.012 19.7 3.7 35 142-195 53-87 (93)
No 1
>2fyu_K Ubiquinol-cytochrome C reductase complex 6.4 kDa; transmembrane helices, 11 protein complex, oxidoreductase; HET: HEM FDN; 2.26A {Bos taurus} SCOP: f.23.15.1 PDB: 1sqq_K* 1sqv_K* 1sqx_K* 1l0l_K* 1ntk_K* 1ntm_K* 1ntz_K* 1nu1_K* 1sqp_K* 1sqb_K* 1be3_K* 1bgy_K* 2ybb_K* 1l0n_K* 1qcr_K*
Probab=22.15 E-value=76 Score=21.76 Aligned_cols=34 Identities=18% Similarity=0.142 Sum_probs=24.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhccCCCcccce
Q 028840 128 YSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLM 161 (203)
Q Consensus 128 ~av~~~g~gaiVAL~v~~aVL~AID~IPLLp~lL 161 (203)
|+...+|.++.+++.-+.-==.-++.||++.+-+
T Consensus 19 psa~~~Gaaa~v~~ly~tdwr~IL~~IP~ig~kf 52 (56)
T 2fyu_K 19 PTASLWGAVGAVGLVWATDWRLILDWVPYINGKF 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHTSSSSCCCCC
T ss_pred hhhhhhhhhhhhheeeeccHHHHHhhcCccCCcc
Confidence 7788888877666665554556678889887644
No 2
>2bai_A Genome polyprotein; zinc finger domain, viruses, cardiovirus, structural genomics, PSI, protein structure initiative; NMR {Mengo virus} SCOP: g.87.1.1
Probab=17.87 E-value=23 Score=22.26 Aligned_cols=11 Identities=27% Similarity=0.631 Sum_probs=8.4
Q ss_pred chhhhhhhhhh
Q 028840 3 LCTAIQTQSAI 13 (203)
Q Consensus 3 ~~~~~~~~~~~ 13 (203)
+|||+|++.-|
T Consensus 21 ~CtA~d~t~~f 31 (32)
T 2bai_A 21 KCSALQYRNGF 31 (32)
T ss_dssp HHHCSSSTTCC
T ss_pred ccceeeccCCC
Confidence 69999987543
No 3
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=14.45 E-value=1.8e+02 Score=22.95 Aligned_cols=76 Identities=13% Similarity=0.219 Sum_probs=56.5
Q ss_pred chhhhhHHHHHHHHHH-------------HHHHHHHHhccCCCcccceeeeeeeeeeeehhhhcc-cccchHHHHHHHHH
Q 028840 127 KYSLVLYGTGALLALW-------------LTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLL-FKKNRDELATKIEE 192 (203)
Q Consensus 127 K~av~~~g~gaiVAL~-------------v~~aVL~AID~IPLLp~lLELVGLgYs~WFvyRyLL-fke~RqEL~~kI~~ 192 (203)
+.+++=-|+--++..| +=.+++.++..+|+=..-|.=-|||-++-|.+++=- ..++|+-.-.-|+.
T Consensus 54 ~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lPI~~e~Lk~SglGkvv~~l~k~~~et~~nk~la~~Li~~ 133 (145)
T 2xpp_A 54 QESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKIHKEHLVTSGVGKIVYFYSINPKESKEVRASAKALVQK 133 (145)
T ss_dssp HHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCCCHHHHHHHCHHHHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCCCCHHHhhcCCCCcchhhhhcCCccCHHHHHHHHHHHHH
Confidence 4555556666778888 568999999999987778888899999988886543 45667666667777
Q ss_pred HhhhhcCCCC
Q 028840 193 LKQQVLGSND 202 (203)
Q Consensus 193 lk~~IlG~~d 202 (203)
..+-|+|.+|
T Consensus 134 WsRpi~~~s~ 143 (145)
T 2xpp_A 134 WTNEVFKPEG 143 (145)
T ss_dssp HHHHHTC---
T ss_pred HHHHHhCCCC
Confidence 7788888765
No 4
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=13.37 E-value=45 Score=26.32 Aligned_cols=43 Identities=12% Similarity=0.130 Sum_probs=34.7
Q ss_pred cccceeeeeeeeeeeehhhhcccccchHHHHHHHHHHhhhhcC
Q 028840 157 FPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLG 199 (203)
Q Consensus 157 Lp~lLELVGLgYs~WFvyRyLLfke~RqEL~~kI~~lk~~IlG 199 (203)
+-.+|..+|+-+..++....+-..++|++.+++.++.-++++|
T Consensus 162 l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (204)
T 2amj_A 162 FHKANQFLGMEPLPTFIANDVIKMPDVPRYTEEYRKHLVEIFG 204 (204)
T ss_dssp HHHHHHHTTCEECCCEEECSTTTSCCTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCeecceEEEeCCCCcHHHHHHHHHHHHHHHHhhC
Confidence 4578889999999998888777777999999998887666653
No 5
>2zjs_E Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E
Probab=12.57 E-value=2.1e+02 Score=18.93 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=17.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhccCCCcccceeeee
Q 028840 128 YSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVG 165 (203)
Q Consensus 128 ~av~~~g~gaiVAL~v~~aVL~AID~IPLLp~lLELVG 165 (203)
..+.-+.+.+++...+.+..+..+|.+ +..+++++|
T Consensus 25 ~e~~~~t~vViv~v~i~~~~~~~vD~~--~~~~~~~ig 60 (60)
T 2zjs_E 25 EQVVEGTQAILLFTLAFMVILGLYDTV--FRFLIGLLR 60 (60)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHT--TTTTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhC
Confidence 344445555555555556666666653 444444444
No 6
>2x43_S Sherp; membrane protein; NMR {Leishmania major}
Probab=12.37 E-value=1.3e+02 Score=21.58 Aligned_cols=22 Identities=23% Similarity=0.551 Sum_probs=18.3
Q ss_pred cchHHHHHHHHHHhhhhcCCCC
Q 028840 181 KNRDELATKIEELKQQVLGSND 202 (203)
Q Consensus 181 e~RqEL~~kI~~lk~~IlG~~d 202 (203)
+-|+...++++++|.+|.|..|
T Consensus 37 elkD~~~~~~E~iKDKisgGsd 58 (67)
T 2x43_S 37 EVRDAVSSTVESIKDKLSGGSS 58 (67)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCC
T ss_pred HHHHHHHhHHHHHHHHhccCcc
Confidence 4577888999999999999765
No 7
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=11.18 E-value=52 Score=25.66 Aligned_cols=96 Identities=10% Similarity=0.154 Sum_probs=59.8
Q ss_pred CCCCCCCCcchhHHHHHHhhh---hcc---------ccCchhhhhHHHHHHHHHHHHHHHHHHhccCCCcccceeeeeee
Q 028840 100 VPKEESPVDGLTNELLDNLKI---KFD---------SEDKYSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGLG 167 (203)
Q Consensus 100 ~~~~~~~v~~q~~E~l~~l~~---kwd---------~edK~av~~~g~gaiVAL~v~~aVL~AID~IPLLp~lLELVGLg 167 (203)
+|.=--.++++....+|.+-. -|. -.+|+.+++...|+- . |......+.. . +++-.+|..+|+-
T Consensus 81 ~P~y~~~~pa~LK~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~-~-~y~~~~~~~~-~-~~l~~~l~~~G~~ 156 (196)
T 3lcm_A 81 FPIWWSGMPAILKGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTHNTP-S-FAMPFVQDYG-K-VLKKQILKPCAIS 156 (196)
T ss_dssp EECBTTBCCHHHHHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEECSSC-G-GGTTTSSCTT-H-HHHHHTTGGGTCC
T ss_pred CchhhccccHHHHHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcCCCc-h-hhHhhhccCH-H-HHHHHHHHhcCCc
Confidence 344444667778888888731 111 235655544443332 1 1100001112 2 6678899999999
Q ss_pred eeeeehhhhcc--cccchHHHHHHHHHHhhhhcC
Q 028840 168 YTLWFSWRYLL--FKKNRDELATKIEELKQQVLG 199 (203)
Q Consensus 168 Ys~WFvyRyLL--fke~RqEL~~kI~~lk~~IlG 199 (203)
+..++....+- ..+.|++.+++++++-++|+-
T Consensus 157 ~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~ 190 (196)
T 3lcm_A 157 PVKLTELTSIEKISDDERQKLLHKVAQITRNILE 190 (196)
T ss_dssp CEEEEEECSTTTSCHHHHHHHHHHHHHHHHTCCC
T ss_pred eeeEEEEeCcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99988877664 457899999999999988875
No 8
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=10.31 E-value=1.1e+02 Score=25.14 Aligned_cols=42 Identities=7% Similarity=0.033 Sum_probs=36.3
Q ss_pred ccceeeeeeeeeeeehhhhcccccchHHHHHHHHHHhhhhcC
Q 028840 158 PKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLG 199 (203)
Q Consensus 158 p~lLELVGLgYs~WFvyRyLLfke~RqEL~~kI~~lk~~IlG 199 (203)
-.+|+.+|+-+.-+|+.-.....++|++.++++++.-++++.
T Consensus 176 ~~~l~f~G~~~l~~~~~~g~~~~~~~~~~~~~~~~~L~~~~~ 217 (218)
T 3rpe_A 176 HKANQFLGMKPLPTFMCNDVIKQPDIEGDIARYRQHLAENVN 217 (218)
T ss_dssp HHHHHHTTCEECCCEEECSTTTSCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCCEEeceEEEeCCCChHHHHHHHHHHHHHHHHhcc
Confidence 678999999999999988888899999999999887776654
No 9
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=9.60 E-value=92 Score=24.26 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=16.1
Q ss_pred cccceeeeeeeeeeeccCCCC-CCcccc
Q 028840 36 LSLKQTTVSRSGILYYTNPLP-KATSEE 62 (203)
Q Consensus 36 ~~~~~~~~~r~g~~~~~~~~~-~atsee 62 (203)
.|-...+-+| .||++|+.. ..|.++
T Consensus 26 ~p~~~~~~~~--~l~V~nLp~~~~te~~ 51 (229)
T 2adc_A 26 IPGLAGAGNS--VLLVSNLNPERVTPQS 51 (229)
T ss_dssp CGGGGCCCCS--EEEEESCCTTTCCHHH
T ss_pred CCCCCCCCCC--EEEEeCCCcccCCHHH
Confidence 3434444455 899999988 666544
No 10
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=8.72 E-value=3.5e+02 Score=19.69 Aligned_cols=35 Identities=20% Similarity=0.068 Sum_probs=26.3
Q ss_pred HHHHHHHHHhccCCCcccceeeeeeeeeeeehhhhcccccchHHHHHHHHHHhh
Q 028840 142 WLTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQ 195 (203)
Q Consensus 142 ~v~~aVL~AID~IPLLp~lLELVGLgYs~WFvyRyLLfke~RqEL~~kI~~lk~ 195 (203)
.++-++.+||..+| -+.+..+.|++|.+.++++|.
T Consensus 53 ~~L~aL~gAi~G~~-------------------w~~l~~~~K~~L~~~~~~lk~ 87 (93)
T 3mab_A 53 SELYALEGAVQGIR-------------------WHGLDEAKKIELKKFHQSLEG 87 (93)
T ss_dssp HHHHHHHHHHHTSC-------------------GGGSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCc-------------------HHHCCHHHHHHHHHHHHHhhc
Confidence 34556677777766 355889999999999998874
Done!