Query 028840
Match_columns 203
No_of_seqs 128 out of 178
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 04:51:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028840.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028840hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rl6a2 d.141.1.1 (A:82-170) R 19.5 12 0.00088 26.0 0.2 14 159-172 3-16 (89)
2 d2j01h2 d.141.1.1 (H:83-171) R 17.4 14 0.001 25.7 0.2 20 159-178 3-22 (89)
3 d2zjre1 d.141.1.1 (E:83-172) R 13.7 20 0.0015 24.7 0.2 19 159-177 3-21 (90)
4 d2qamg2 d.141.1.1 (G:82-176) R 13.0 19 0.0014 25.2 -0.0 19 159-177 3-21 (95)
5 d3bvua1 a.8.3.1 (A:412-522) Go 12.5 28 0.002 24.0 0.7 26 167-192 3-30 (111)
6 d2ebfx3 d.3.1.17 (X:1094-1285) 12.3 43 0.0031 25.6 1.8 20 178-197 40-59 (192)
7 d1q4ra_ d.58.4.4 (A:) Hypothet 8.6 72 0.0052 20.8 1.7 30 170-199 6-35 (103)
8 d1tr0a_ d.58.4.4 (A:) Boiling 8.1 97 0.007 20.2 2.2 31 170-200 11-41 (106)
9 d2fpwa1 c.108.1.19 (A:3-163) H 8.0 97 0.0071 21.8 2.3 10 73-82 7-16 (161)
10 d1gyxa_ d.80.1.1 (A:) 4-oxaloc 7.9 89 0.0065 20.4 1.9 24 178-201 12-35 (76)
No 1
>d1rl6a2 d.141.1.1 (A:82-170) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=19.45 E-value=12 Score=25.96 Aligned_cols=14 Identities=43% Similarity=0.676 Sum_probs=10.7
Q ss_pred cceeeeeeeeeeee
Q 028840 159 KLMEVVGLGYTLWF 172 (203)
Q Consensus 159 ~lLELVGLgYs~WF 172 (203)
.-|||+|+||=+--
T Consensus 3 k~L~lvGVGYra~~ 16 (89)
T d1rl6a2 3 KALELVGVGYRASK 16 (89)
T ss_dssp EEEEEESTTCEEEE
T ss_pred EEEEEEEEEEEEEe
Confidence 45899999997643
No 2
>d2j01h2 d.141.1.1 (H:83-171) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]}
Probab=17.43 E-value=14 Score=25.67 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=14.5
Q ss_pred cceeeeeeeeeeeehhhhcc
Q 028840 159 KLMEVVGLGYTLWFSWRYLL 178 (203)
Q Consensus 159 ~lLELVGLgYs~WFvyRyLL 178 (203)
.-|||+|+||=+.---++|.
T Consensus 3 k~LelvGVGYra~~~g~~L~ 22 (89)
T d2j01h2 3 KELLIKGIGYRARLVGRALE 22 (89)
T ss_dssp CEECCCSSSCEECCBTTBEE
T ss_pred EEEEEEEEEEEEEEeCCEEE
Confidence 45899999998866554443
No 3
>d2zjre1 d.141.1.1 (E:83-172) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]}
Probab=13.68 E-value=20 Score=24.75 Aligned_cols=19 Identities=21% Similarity=0.357 Sum_probs=12.7
Q ss_pred cceeeeeeeeeeeehhhhc
Q 028840 159 KLMEVVGLGYTLWFSWRYL 177 (203)
Q Consensus 159 ~lLELVGLgYs~WFvyRyL 177 (203)
.-|||+|+||=+-..-++|
T Consensus 3 k~L~lvGVGYra~~~g~~L 21 (90)
T d2zjre1 3 INLELRGVGFRAKLTGKAL 21 (90)
T ss_dssp EEEECBSTTCCCCCBTTBC
T ss_pred EEEEEEEEEEEEEecCCEE
Confidence 3589999999765443333
No 4
>d2qamg2 d.141.1.1 (G:82-176) Ribosomal protein L6 {Escherichia coli [TaxId: 562]}
Probab=12.99 E-value=19 Score=25.17 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=13.4
Q ss_pred cceeeeeeeeeeeehhhhc
Q 028840 159 KLMEVVGLGYTLWFSWRYL 177 (203)
Q Consensus 159 ~lLELVGLgYs~WFvyRyL 177 (203)
.-|||+|+||=+..--.+|
T Consensus 3 k~L~lvGVGYRa~~~g~~L 21 (95)
T d2qamg2 3 KKLQLVGVGYRAAVKGNVI 21 (95)
T ss_dssp CCCCBCSSSCCCCCCTTEE
T ss_pred EEEEEEeEEEEEEEcCCEE
Confidence 4589999999776544443
No 5
>d3bvua1 a.8.3.1 (A:412-522) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=12.48 E-value=28 Score=23.96 Aligned_cols=26 Identities=12% Similarity=0.092 Sum_probs=19.1
Q ss_pred eeeeeehhhhcccccchH--HHHHHHHH
Q 028840 167 GYTLWFSWRYLLFKKNRD--ELATKIEE 192 (203)
Q Consensus 167 gYs~WFvyRyLLfke~Rq--EL~~kI~~ 192 (203)
-|||+|+.|.-++.-+|+ .++..++.
T Consensus 3 yWtG~yTSr~~lK~~~R~~e~~L~~~E~ 30 (111)
T d3bvua1 3 YWSGYYTSRPYHKRMDRVLMHYVRAAEM 30 (111)
T ss_dssp BCCGGGTSSHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeehhChHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999984 34444443
No 6
>d2ebfx3 d.3.1.17 (X:1094-1285) Dermonecrotic toxin, ToxA {Pasteurella multocida [TaxId: 747]}
Probab=12.31 E-value=43 Score=25.60 Aligned_cols=20 Identities=35% Similarity=0.549 Sum_probs=16.6
Q ss_pred ccccchHHHHHHHHHHhhhh
Q 028840 178 LFKKNRDELATKIEELKQQV 197 (203)
Q Consensus 178 Lfke~RqEL~~kI~~lk~~I 197 (203)
+...-|+||.+||+.+|+++
T Consensus 40 vsedlreelmqkidaikndv 59 (192)
T d2ebfx3 40 VSEDLREELMQKIDAIKNDV 59 (192)
T ss_dssp SCHHHHHHHHHHHHHHHTCH
T ss_pred hhHHHHHHHHHHHHHHhccc
Confidence 44566999999999999876
No 7
>d1q4ra_ d.58.4.4 (A:) Hypothetical protein AT3G17210.1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=8.64 E-value=72 Score=20.76 Aligned_cols=30 Identities=17% Similarity=0.103 Sum_probs=23.2
Q ss_pred eeehhhhcccccchHHHHHHHHHHhhhhcC
Q 028840 170 LWFSWRYLLFKKNRDELATKIEELKQQVLG 199 (203)
Q Consensus 170 ~WFvyRyLLfke~RqEL~~kI~~lk~~IlG 199 (203)
+.|-++-=...++++++.+.++.|+.+|-|
T Consensus 6 Vlfk~k~~~~~~~~~~~~~~l~~L~~~ip~ 35 (103)
T d1q4ra_ 6 LLASFKDGVSPEKIEELIKGYANLVNLIEP 35 (103)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHTHHHHCTT
T ss_pred EEEEECCCCCHHHHHHHHHHHHHhhhhCce
Confidence 345555556678899999999999998876
No 8
>d1tr0a_ d.58.4.4 (A:) Boiling stable protein 1 {European aspen (Populus tremula) [TaxId: 113636]}
Probab=8.11 E-value=97 Score=20.23 Aligned_cols=31 Identities=10% Similarity=0.124 Sum_probs=23.4
Q ss_pred eeehhhhcccccchHHHHHHHHHHhhhhcCC
Q 028840 170 LWFSWRYLLFKKNRDELATKIEELKQQVLGS 200 (203)
Q Consensus 170 ~WFvyRyLLfke~RqEL~~kI~~lk~~IlG~ 200 (203)
+.|-++.=...++++++.+.+..++.+|-|-
T Consensus 11 Vlfklk~~~~~~~~~~~~~~l~~l~~~ip~i 41 (106)
T d1tr0a_ 11 LLTRFKDEITREQIDNYINDYTNLLDLIPSM 41 (106)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHHHHCTTC
T ss_pred EEEEECCCCCHHHHHHHHHHHHHhhhcCCce
Confidence 4455555556778899999999999988763
No 9
>d2fpwa1 c.108.1.19 (A:3-163) Histidine biosynthesis bifunctional protein HisB, phosphatase domain {Escherichia coli [TaxId: 562]}
Probab=8.05 E-value=97 Score=21.77 Aligned_cols=10 Identities=40% Similarity=0.531 Sum_probs=7.9
Q ss_pred ccCCceeeee
Q 028840 73 DKRDGATAAE 82 (203)
Q Consensus 73 e~~dg~~~~e 82 (203)
=+|||+++.|
T Consensus 7 ~D~DGtL~~~ 16 (161)
T d2fpwa1 7 IDRDGTLISE 16 (161)
T ss_dssp ECCBTTTBCC
T ss_pred EeCCCCeEee
Confidence 4799998865
No 10
>d1gyxa_ d.80.1.1 (A:) 4-oxalocrotonate tautomerase homologue YdcE {Escherichia coli [TaxId: 562]}
Probab=7.86 E-value=89 Score=20.35 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=20.7
Q ss_pred ccccchHHHHHHHHHHhhhhcCCC
Q 028840 178 LFKKNRDELATKIEELKQQVLGSN 201 (203)
Q Consensus 178 Lfke~RqEL~~kI~~lk~~IlG~~ 201 (203)
|..+.+++|.++|.+.-.+++|..
T Consensus 12 lT~EQK~~L~~~iT~a~~~~lg~~ 35 (76)
T d1gyxa_ 12 LDEQQKAALAADITDVIIRHLNSK 35 (76)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcC
Confidence 356788999999999999999964
Done!