BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028841
(203 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B6I|A Chain A, Wrba From Escherichia Coli, Native Structure
pdb|3B6I|B Chain B, Wrba From Escherichia Coli, Native Structure
pdb|3B6J|A Chain A, Wrba From Escherichia Coli, Nadh Complex
pdb|3B6J|B Chain B, Wrba From Escherichia Coli, Nadh Complex
pdb|3B6K|A Chain A, Wrba From Escherichia Coli, Benzoquinone Complex
pdb|3B6K|B Chain B, Wrba From Escherichia Coli, Benzoquinone Complex
pdb|3B6M|A Chain A, Wrba From Escherichia Coli, Second Crystal Form
pdb|3B6M|B Chain B, Wrba From Escherichia Coli, Second Crystal Form
pdb|2R96|A Chain A, Crystal Structure Of E. Coli Wrba In Complex With Fmn
pdb|2R96|C Chain C, Crystal Structure Of E. Coli Wrba In Complex With Fmn
pdb|2R97|A Chain A, Crystal Structure Of E. Coli Wrba In Complex With Fmn
pdb|2R97|C Chain C, Crystal Structure Of E. Coli Wrba In Complex With Fmn
pdb|2RG1|A Chain A, Crystal Structure Of E. Coli Wrba Apoprotein
pdb|2RG1|B Chain B, Crystal Structure Of E. Coli Wrba Apoprotein
Length = 198
Score = 176 bits (445), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 92/199 (46%), Positives = 127/199 (63%), Gaps = 4/199 (2%)
Query: 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPII 63
KV ++YYSMYGH+E +A + +GAS V+G E + +VPET+P ++ K ++ P+
Sbjct: 3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQT-APVA 61
Query: 64 TPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXX 123
TP ELA+ D +FG PTRFG M+ Q + FLD TGGLW + L GK A +F
Sbjct: 62 TPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQE 121
Query: 124 XXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELEL 182
T T L HHGM+ VPIGY +F++ +V+GG+PYGA T A GDGSRQP++ EL
Sbjct: 122 QTITST-WTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEEL 179
Query: 183 EQAFHQGKHIAGIAKKLKG 201
A +QG+++AG+A KL G
Sbjct: 180 SIARYQGEYVAGLAVKLNG 198
>pdb|2ZKI|A Chain A, Crystal Structure Of Hypothetical Trp Repressor Binding
Protein From Sul Folobus Tokodaii (St0872)
pdb|2ZKI|B Chain B, Crystal Structure Of Hypothetical Trp Repressor Binding
Protein From Sul Folobus Tokodaii (St0872)
pdb|2ZKI|C Chain C, Crystal Structure Of Hypothetical Trp Repressor Binding
Protein From Sul Folobus Tokodaii (St0872)
pdb|2ZKI|D Chain D, Crystal Structure Of Hypothetical Trp Repressor Binding
Protein From Sul Folobus Tokodaii (St0872)
pdb|2ZKI|E Chain E, Crystal Structure Of Hypothetical Trp Repressor Binding
Protein From Sul Folobus Tokodaii (St0872)
pdb|2ZKI|F Chain F, Crystal Structure Of Hypothetical Trp Repressor Binding
Protein From Sul Folobus Tokodaii (St0872)
pdb|2ZKI|G Chain G, Crystal Structure Of Hypothetical Trp Repressor Binding
Protein From Sul Folobus Tokodaii (St0872)
pdb|2ZKI|H Chain H, Crystal Structure Of Hypothetical Trp Repressor Binding
Protein From Sul Folobus Tokodaii (St0872)
Length = 199
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 104/199 (52%), Gaps = 11/199 (5%)
Query: 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPII 63
+ +++Y YG + +LA+EI KGA G E K+ +V ETLP E ++ D+P +
Sbjct: 6 NILVLFYG-YGSIVELAKEIGKGAEEA-GAEVKIRRVRETLPPEFQSRIPFDKVKDIPEV 63
Query: 64 TPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXX 123
T +++ ADGF G PTR+G MA K FLD T LW+ L GKP F
Sbjct: 64 TLDDMRWADGFAIGSPTRYGNMAGGLKTFLDTTAILWKDNVLYGKPVTFFTEASTVHGGH 123
Query: 124 XXXALTAITQLVHHGMIFVPIGYTFGAGMFEM-EKVKGGSPYGAGTFAGDGSRQP-TELE 181
LT T H GMI VPIGY G+ E+ + GG PYGA GS++ E+E
Sbjct: 124 ETTILTMSTYAYHFGMIIVPIGY----GIPELFQTTTGGGPYGATHL---GSKEELDEME 176
Query: 182 LEQAFHQGKHIAGIAKKLK 200
+ A QGK I +AK +K
Sbjct: 177 RKIARFQGKRITEVAKAIK 195
>pdb|1ZWK|A Chain A, Structure Of Wrba From Pseudomonas Aeruginosa
pdb|1ZWK|B Chain B, Structure Of Wrba From Pseudomonas Aeruginosa
pdb|1ZWL|A Chain A, Structure Of Wrba From Pseudomonas Aeruginosa In Complex
With Fmn
Length = 207
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 97/200 (48%), Gaps = 10/200 (5%)
Query: 5 VYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAP--PKSDVPI 62
+ ++YYS +G ++A +I +G G EA++ VP E + AP P
Sbjct: 15 ILVLYYSRHGATAEMARQIARGVEQ-GGFEARVRTVPAVSTE---CEAVAPDIPAEGALY 70
Query: 63 ITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXX 122
T +L G G PTRFG MA+ K FLD T LW T L GKPA +F
Sbjct: 71 ATLEDLKNCAGLALGSPTRFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASLHGG 130
Query: 123 XXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELE 181
L+ + L+HHGM+ + I Y+ A +E GG+PYGA FAG DG R E E
Sbjct: 131 QETTQLSMLLPLLHHGMLVLGIPYSEPA---LLETRGGGTPYGASHFAGADGKRSLDEHE 187
Query: 182 LEQAFHQGKHIAGIAKKLKG 201
L GK +A A KL+G
Sbjct: 188 LTLCRALGKRLAETAGKLEG 207
>pdb|2A5L|A Chain A, The Crystal Structure Of The Trp Repressor Binding Protein
Wrba From Pseudomonas Aeruginosa
pdb|2A5L|B Chain B, The Crystal Structure Of The Trp Repressor Binding Protein
Wrba From Pseudomonas Aeruginosa
Length = 200
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 94/201 (46%), Gaps = 16/201 (7%)
Query: 5 VYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPI-- 62
+ ++YYS +G + A +I +G G EA++ VP E + AP D+P
Sbjct: 8 ILVLYYSRHGATAEXARQIARGVEQ-GGFEARVRTVPAVSTE---CEAVAP---DIPAEG 60
Query: 63 ---ITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXX 119
T +L G G PTRFG A+ K FLD T LW T L GKPA +F
Sbjct: 61 ALYATLEDLKNCAGLALGSPTRFGNXASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASL 120
Query: 120 XXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPT 178
L+ + L+HHG + + I Y+ A +E GG+PYGA FAG DG R
Sbjct: 121 HGGQETTQLSXLLPLLHHGXLVLGIPYSEPA---LLETRGGGTPYGASHFAGADGKRSLD 177
Query: 179 ELELEQAFHQGKHIAGIAKKL 199
E EL GK +A A KL
Sbjct: 178 EHELTLCRALGKRLAETAGKL 198
>pdb|1YDG|A Chain A, Crystal Structure Of Trp Repressor Binding Protein Wrba
pdb|1YDG|B Chain B, Crystal Structure Of Trp Repressor Binding Protein Wrba
pdb|1YDG|C Chain C, Crystal Structure Of Trp Repressor Binding Protein Wrba
pdb|1YDG|D Chain D, Crystal Structure Of Trp Repressor Binding Protein Wrba
pdb|1YDG|E Chain E, Crystal Structure Of Trp Repressor Binding Protein Wrba
pdb|1YDG|F Chain F, Crystal Structure Of Trp Repressor Binding Protein Wrba
pdb|1YDG|G Chain G, Crystal Structure Of Trp Repressor Binding Protein Wrba
pdb|1YDG|H Chain H, Crystal Structure Of Trp Repressor Binding Protein Wrba
Length = 211
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 77/171 (45%), Gaps = 16/171 (9%)
Query: 36 KLWQVPETLPEEVLG-----KMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFK 90
+L +V ET P++V+ K + DVP TP +L A+ VF PTRFG +Q +
Sbjct: 39 RLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSSPTRFGGATSQMR 98
Query: 91 AFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLVHHGMIFVPIGYTFGA 150
AF+D GGLW + +LA K T +H G + P GYT
Sbjct: 99 AFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPPGYT--- 155
Query: 151 GMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAF--HQGKHIAGIAKKL 199
E+ GG+PYGA A QP LE ++A HQ + + KL
Sbjct: 156 --DEVIFKSGGNPYGASVTANG---QPL-LENDRASIRHQVRRQVELTAKL 200
>pdb|1YRH|A Chain A, Crystal Structure Of Trp Repressor Binding Protein Wrba In
Complex With Fmn
pdb|1YRH|B Chain B, Crystal Structure Of Trp Repressor Binding Protein Wrba In
Complex With Fmn
pdb|1YRH|C Chain C, Crystal Structure Of Trp Repressor Binding Protein Wrba In
Complex With Fmn
pdb|1YRH|D Chain D, Crystal Structure Of Trp Repressor Binding Protein Wrba In
Complex With Fmn
pdb|1YRH|E Chain E, Crystal Structure Of Trp Repressor Binding Protein Wrba In
Complex With Fmn
pdb|1YRH|F Chain F, Crystal Structure Of Trp Repressor Binding Protein Wrba In
Complex With Fmn
pdb|1YRH|G Chain G, Crystal Structure Of Trp Repressor Binding Protein Wrba In
Complex With Fmn
pdb|1YRH|H Chain H, Crystal Structure Of Trp Repressor Binding Protein Wrba In
Complex With Fmn
Length = 211
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 88/203 (43%), Gaps = 17/203 (8%)
Query: 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLG-----KMSAPPKS 58
K+ IV+YS G + A G E +L +V ET P++V+ K +
Sbjct: 8 KLAIVFYSSTG-TGYAXAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAXK 66
Query: 59 DVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXX 118
DVP TP +L A+ VF PTRFG +Q +AF+D GGLW + +LA K
Sbjct: 67 DVPEATPADLEWAEAIVFSSPTRFGGATSQXRAFIDTLGGLWSSGKLANKTFSAXTSAQN 126
Query: 119 XXXXXXXXALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPT 178
T H G + P GYT E+ GG+PYGA A QP
Sbjct: 127 VNGGQETTLQTLYXTAXHWGAVLTPPGYT-----DEVIFKSGGNPYGASVTANG---QPL 178
Query: 179 ELELEQAF--HQGKHIAGIAKKL 199
LE ++A HQ + + KL
Sbjct: 179 -LENDRASIRHQVRRQVELTAKL 200
>pdb|2ARK|A Chain A, Structure Of A Flavodoxin From Aquifex Aeolicus
pdb|2ARK|B Chain B, Structure Of A Flavodoxin From Aquifex Aeolicus
pdb|2ARK|C Chain C, Structure Of A Flavodoxin From Aquifex Aeolicus
pdb|2ARK|D Chain D, Structure Of A Flavodoxin From Aquifex Aeolicus
pdb|2ARK|E Chain E, Structure Of A Flavodoxin From Aquifex Aeolicus
pdb|2ARK|F Chain F, Structure Of A Flavodoxin From Aquifex Aeolicus
Length = 188
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 59/138 (42%), Gaps = 23/138 (16%)
Query: 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPII 63
KV ++Y + G+ +K AE + +GA S+EG E +L V E E+VL
Sbjct: 6 KVLVIYDTRTGNTKKXAELVAEGARSLEGTEVRLKHVDEATKEDVLW------------- 52
Query: 64 TPNELAEADGFVFGFPTRFGMMAAQFKAFLDAT-GGLWRTQQLAGKPAGMFYXXXXXXXX 122
ADG G PT G+++ + K F D G LW ++ GK A F
Sbjct: 53 -------ADGLAVGSPTNXGLVSWKXKRFFDDVLGDLW--GEIDGKIACAFSSSGGWGGG 103
Query: 123 XXXXALTAITQLVHHGMI 140
+ +T L + G +
Sbjct: 104 NEVACXSILTXLXNFGFL 121
>pdb|2OHH|A Chain A, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Active Oxidized State
pdb|2OHH|B Chain B, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Active Oxidized State
pdb|2OHH|D Chain D, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Active Oxidized State
pdb|2OHH|E Chain E, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Active Oxidized State
pdb|2OHI|A Chain A, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Reduced State
pdb|2OHI|B Chain B, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Reduced State
pdb|2OHI|D Chain D, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Reduced State
pdb|2OHI|E Chain E, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Reduced State
pdb|2OHI|G Chain G, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Reduced State
pdb|2OHI|H Chain H, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Reduced State
pdb|2OHI|I Chain I, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Reduced State
pdb|2OHI|J Chain J, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Reduced State
pdb|2OHJ|A Chain A, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Inactive Oxidized State
pdb|2OHJ|B Chain B, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Inactive Oxidized State
pdb|2OHJ|D Chain D, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Inactive Oxidized State
pdb|2OHJ|E Chain E, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Inactive Oxidized State
Length = 404
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVL 49
+V ++Y +M+G K+A I +GA S EGV+ +++ + E E++
Sbjct: 258 RVTVIYDTMHGSTRKMAHAIAEGAMS-EGVDVRVYCLHEDDRSEIV 302
>pdb|3D7N|A Chain A, The Crystal Structure Of The Flavodoxin, Wrba-Like Protein
From Agrobacterium Tumefaciens
Length = 193
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 53/136 (38%), Gaps = 14/136 (10%)
Query: 76 FGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXXALTAITQLV 135
FG PT G + QFK F DA+ W + + K G F L + LV
Sbjct: 60 FGTPTYXGGPSWQFKKFADASSKPWFSAKWQDKVFGGF----TNSASLNGDKLNTLQYLV 115
Query: 136 ----HHGMIFVPIGY--TFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTEL---ELEQAF 186
HG ++V +G + + + GS Y A D P E +LE A
Sbjct: 116 LLAGQHGGLWVSLGIKPSNLKSSVRNDANRXGS-YIAPXAQSDADAAPEEXSVGDLETAR 174
Query: 187 HQGKHIAGIAKKLKGS 202
G +A +A++ K +
Sbjct: 175 LYGARVANVARQHKST 190
>pdb|2FAX|A Chain A, Clostridium Beijerinckii Flavodoxin Mutant: N137a
Oxidized (150k)
pdb|2FDX|A Chain A, Clostridium Beijerinckii Flavodoxin Mutant N137a
Oxidized
pdb|6NUL|A Chain A, Clostridium Beijerinckii Flavodoxin Mutant: N137a
Reduced (150k)
Length = 138
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 7 IVYYSMYGHVEKLAEEIKKG----ASSVEGVEAKLWQVPETLPEEVL 49
IVY+S G+ EK+AE I KG V + + E L E++L
Sbjct: 3 IVYWSGTGNTEKMAELIAKGIIESGKDVNTINVSDVNIDELLNEDIL 49
>pdb|2FOX|A Chain A, Clostridium Beijerinckii Flavodoxin: Semiquinone
pdb|5NLL|A Chain A, Clostridium Beijerinckii Flavodoxin: Oxidized
pdb|5ULL|A Chain A, Clostridium Beijerinckii Flavodoxin: Reduced
Length = 138
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 7 IVYYSMYGHVEKLAEEIKKG----ASSVEGVEAKLWQVPETLPEEVL 49
IVY+S G+ EK+AE I KG V + + E L E++L
Sbjct: 3 IVYWSGTGNTEKMAELIAKGIIESGKDVNTINVSDVNIDELLNEDIL 49
>pdb|1FLD|A Chain A, Clostridium Beijerinckii Flavodoxin Mutant: G57t
Oxidized
pdb|2FLV|A Chain A, Clostridium Beijerinckii Flavodoxin Mutant: G57t Reduced
(150k)
pdb|2FVX|A Chain A, Clostridium Beijerinckii Flavodoxin Mutant: G57t Reduced
(277k)
pdb|5NUL|A Chain A, Clostridium Beijerinckii Flavodoxin Mutant: G57t
Semiquinone (150k)
Length = 138
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 7 IVYYSMYGHVEKLAEEIKKG----ASSVEGVEAKLWQVPETLPEEVL 49
IVY+S G+ EK+AE I KG V + + E L E++L
Sbjct: 3 IVYWSGTGNTEKMAELIAKGIIESGKDVNTINVSDVNIDELLNEDIL 49
>pdb|3NLL|A Chain A, Clostridium Beijerinckii Flavodoxin Mutant: G57a
Oxidized
Length = 138
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 7 IVYYSMYGHVEKLAEEIKKG----ASSVEGVEAKLWQVPETLPEEVL 49
IVY+S G+ EK+AE I KG V + + E L E++L
Sbjct: 3 IVYWSGTGNTEKMAELIAKGIIESGKDVNTINVSDVNIDELLNEDIL 49
>pdb|1FLA|A Chain A, Clostridium Beijerinckii Flavodoxin Mutant: G57d Reduced
pdb|4NLL|A Chain A, Clostridium Beijerinckii Flavodoxin Mutant: G57d
Oxidized
Length = 138
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 7 IVYYSMYGHVEKLAEEIKKG----ASSVEGVEAKLWQVPETLPEEVL 49
IVY+S G+ EK+AE I KG V + + E L E++L
Sbjct: 3 IVYWSGTGNTEKMAELIAKGIIESGKDVNTINVSDVNIDELLNEDIL 49
>pdb|1FVX|A Chain A, Clostridium Beijerinckii Flavodoxin Mutant: G57n
Oxidized
Length = 138
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 7 IVYYSMYGHVEKLAEEIKKG----ASSVEGVEAKLWQVPETLPEEVL 49
IVY+S G+ EK+AE I KG V + + E L E++L
Sbjct: 3 IVYWSGTGNTEKMAELIAKGIIESGKDVNTINVSDVNIDELLNEDIL 49
>pdb|1FLN|A Chain A, Clostridium Beijerinckii Flavodoxin Mutant: D58p Reduced
pdb|4NUL|A Chain A, Clostridium Beijerinckii Flavodoxin Mutant: D58p
Oxidized
Length = 138
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 7 IVYYSMYGHVEKLAEEIKKG----ASSVEGVEAKLWQVPETLPEEVL 49
IVY+S G+ EK+AE I KG V + + E L E++L
Sbjct: 3 IVYWSGTGNTEKMAELIAKGIIESGKDVNTINVSDVNIDELLNEDIL 49
>pdb|3ITD|A Chain A, Crystal Structure Of An Inactive 17beta-Hydroxysteroid
Dehydrogenase (Y167f Mutated Form) From Fungus
Cochliobolus Lunatus
Length = 270
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETL 44
+ KV + Y + EK+ EIK S ++A + QVPE +
Sbjct: 41 LGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIV 84
>pdb|3IS3|A Chain A, Crystal Structure Of 17beta-Hydroxysteroid Dehydrogenase
(Apo Form) From Fungus Cochliobolus Lunatus
pdb|3QWF|A Chain A, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus
pdb|3QWF|B Chain B, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus
pdb|3QWF|C Chain C, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus
pdb|3QWF|D Chain D, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus
pdb|3QWF|E Chain E, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus
pdb|3QWF|F Chain F, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus
pdb|3QWF|G Chain G, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus
pdb|3QWF|H Chain H, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus
pdb|3QWI|A Chain A, Crystal Structure Of A 17beta-Hydroxysteroid
Dehydrogenase (Holo Form) From Fungus Cochliobolus
Lunatus In Complex With Nadph And Coumestrol
pdb|3QWI|B Chain B, Crystal Structure Of A 17beta-Hydroxysteroid
Dehydrogenase (Holo Form) From Fungus Cochliobolus
Lunatus In Complex With Nadph And Coumestrol
pdb|3QWI|C Chain C, Crystal Structure Of A 17beta-Hydroxysteroid
Dehydrogenase (Holo Form) From Fungus Cochliobolus
Lunatus In Complex With Nadph And Coumestrol
pdb|3QWI|D Chain D, Crystal Structure Of A 17beta-Hydroxysteroid
Dehydrogenase (Holo Form) From Fungus Cochliobolus
Lunatus In Complex With Nadph And Coumestrol
pdb|3QWH|A Chain A, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus In Complex With
Nadph And Kaempferol
pdb|3QWH|B Chain B, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus In Complex With
Nadph And Kaempferol
pdb|3QWH|C Chain C, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus In Complex With
Nadph And Kaempferol
pdb|3QWH|D Chain D, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus In Complex With
Nadph And Kaempferol
Length = 270
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETL 44
+ KV + Y + EK+ EIK S ++A + QVPE +
Sbjct: 41 LGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIV 84
>pdb|2DQB|A Chain A, Crystal Structure Of Dntp Triphosphohydrolase From Thermus
Thermophilus Hb8, Which Is Homologous To Dgtp
Triphosphohydrolase
pdb|2DQB|B Chain B, Crystal Structure Of Dntp Triphosphohydrolase From Thermus
Thermophilus Hb8, Which Is Homologous To Dgtp
Triphosphohydrolase
pdb|2DQB|C Chain C, Crystal Structure Of Dntp Triphosphohydrolase From Thermus
Thermophilus Hb8, Which Is Homologous To Dgtp
Triphosphohydrolase
pdb|2DQB|D Chain D, Crystal Structure Of Dntp Triphosphohydrolase From Thermus
Thermophilus Hb8, Which Is Homologous To Dgtp
Triphosphohydrolase
pdb|2DQB|E Chain E, Crystal Structure Of Dntp Triphosphohydrolase From Thermus
Thermophilus Hb8, Which Is Homologous To Dgtp
Triphosphohydrolase
pdb|2DQB|F Chain F, Crystal Structure Of Dntp Triphosphohydrolase From Thermus
Thermophilus Hb8, Which Is Homologous To Dgtp
Triphosphohydrolase
Length = 376
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 13 YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKM 52
Y H E L E +K + +EG+ A + PE LP EV K+
Sbjct: 308 YRHPEVLRER-RKAEAVLEGLFAAYTRYPELLPREVQAKI 346
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,254,644
Number of Sequences: 62578
Number of extensions: 255899
Number of successful extensions: 592
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 567
Number of HSP's gapped (non-prelim): 23
length of query: 203
length of database: 14,973,337
effective HSP length: 94
effective length of query: 109
effective length of database: 9,091,005
effective search space: 990919545
effective search space used: 990919545
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)