Query 028841
Match_columns 203
No_of_seqs 209 out of 2105
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 03:23:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028841.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028841hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK03767 NAD(P)H:quinone oxido 100.0 2.9E-37 6.3E-42 237.7 23.2 199 1-201 1-200 (200)
2 TIGR01755 flav_wrbA NAD(P)H:qu 100.0 5.2E-37 1.1E-41 235.5 22.0 195 4-199 2-197 (197)
3 KOG3135 1,4-benzoquinone reduc 100.0 8.5E-35 1.8E-39 208.8 19.3 199 2-201 1-202 (203)
4 PRK05569 flavodoxin; Provision 99.9 1.5E-26 3.2E-31 168.8 16.6 138 2-193 1-140 (141)
5 COG0655 WrbA Multimeric flavod 99.9 3.4E-26 7.5E-31 177.0 17.4 195 4-199 2-205 (207)
6 PRK06756 flavodoxin; Provision 99.9 3.4E-26 7.3E-31 168.2 16.1 146 1-196 1-147 (148)
7 PRK05568 flavodoxin; Provision 99.9 9.1E-26 2E-30 164.8 16.5 139 2-194 1-141 (142)
8 PRK06703 flavodoxin; Provision 99.9 1.1E-24 2.3E-29 160.8 15.9 148 1-199 1-150 (151)
9 PRK06242 flavodoxin; Provision 99.9 1.2E-24 2.7E-29 160.2 13.4 146 4-195 2-149 (150)
10 TIGR01753 flav_short flavodoxi 99.9 7.7E-24 1.7E-28 153.9 14.9 138 5-193 1-140 (140)
11 PRK11921 metallo-beta-lactamas 99.9 9.2E-24 2E-28 178.1 15.3 145 2-196 247-393 (394)
12 PF03358 FMN_red: NADPH-depend 99.9 1.8E-24 4E-29 159.6 9.6 138 4-146 2-144 (152)
13 PRK07308 flavodoxin; Validated 99.9 5.5E-23 1.2E-27 150.8 14.9 144 1-195 1-145 (146)
14 PRK05452 anaerobic nitric oxid 99.9 1E-22 2.2E-27 175.0 15.8 146 2-197 251-397 (479)
15 PRK10569 NAD(P)H-dependent FMN 99.9 1.1E-22 2.5E-27 155.0 14.3 170 4-198 2-174 (191)
16 PRK09267 flavodoxin FldA; Vali 99.9 3.5E-21 7.6E-26 144.5 17.8 163 1-195 1-166 (169)
17 TIGR03566 FMN_reduc_MsuE FMN r 99.9 6.2E-22 1.3E-26 149.3 12.7 168 4-197 1-172 (174)
18 PRK00170 azoreductase; Reviewe 99.9 1.7E-21 3.8E-26 150.0 10.4 140 1-144 1-171 (201)
19 TIGR03567 FMN_reduc_SsuE FMN r 99.9 8.4E-21 1.8E-25 142.7 12.6 167 4-194 1-170 (171)
20 TIGR02690 resist_ArsH arsenica 99.9 3.8E-20 8.3E-25 143.0 15.9 173 3-200 27-204 (219)
21 PRK01355 azoreductase; Reviewe 99.9 1.1E-20 2.4E-25 145.4 12.9 143 1-144 1-165 (199)
22 COG0426 FpaA Uncharacterized f 99.8 3.9E-20 8.6E-25 152.0 14.0 141 4-194 248-388 (388)
23 PRK12359 flavodoxin FldB; Prov 99.8 8.3E-19 1.8E-23 131.2 18.0 162 4-196 2-168 (172)
24 PRK09739 hypothetical protein; 99.8 3.3E-20 7.2E-25 142.8 8.9 117 2-120 3-133 (199)
25 TIGR01752 flav_long flavodoxin 99.8 9.9E-19 2.1E-23 130.9 16.3 121 4-151 1-124 (167)
26 PRK13556 azoreductase; Provisi 99.8 3.7E-19 8.1E-24 137.8 13.2 143 2-144 1-177 (208)
27 PRK09271 flavodoxin; Provision 99.8 9.7E-19 2.1E-23 130.1 13.7 142 4-196 2-147 (160)
28 TIGR01754 flav_RNR ribonucleot 99.8 8.1E-18 1.8E-22 122.5 12.8 106 4-135 2-111 (140)
29 PRK06934 flavodoxin; Provision 99.8 1.6E-18 3.5E-23 133.8 9.6 112 3-122 36-174 (221)
30 PRK07116 flavodoxin; Provision 99.8 5.4E-18 1.2E-22 126.1 11.0 109 1-120 2-119 (160)
31 PF12682 Flavodoxin_4: Flavodo 99.8 7.4E-18 1.6E-22 124.5 10.1 106 4-120 1-116 (156)
32 COG0716 FldA Flavodoxins [Ener 99.7 7E-17 1.5E-21 119.0 14.7 148 1-195 1-150 (151)
33 PRK13555 azoreductase; Provisi 99.7 5.7E-17 1.2E-21 125.2 14.2 139 1-140 1-173 (208)
34 PF02525 Flavodoxin_2: Flavodo 99.7 6.9E-17 1.5E-21 124.3 13.3 139 4-145 2-174 (199)
35 PRK09004 FMN-binding protein M 99.7 9.6E-17 2.1E-21 117.5 13.1 119 2-145 1-120 (146)
36 PF12641 Flavodoxin_3: Flavodo 99.7 3.5E-17 7.6E-22 121.0 10.0 149 6-190 1-160 (160)
37 COG0431 Predicted flavoprotein 99.7 2.6E-16 5.5E-21 119.6 13.4 129 4-145 2-137 (184)
38 PRK11104 hemG protoporphyrinog 99.7 5.8E-17 1.3E-21 122.4 9.5 87 4-117 2-88 (177)
39 PRK04930 glutathione-regulated 99.7 3.5E-16 7.7E-21 118.1 12.3 133 2-146 5-152 (184)
40 PF12724 Flavodoxin_5: Flavodo 99.7 9.9E-16 2.1E-20 111.9 11.3 90 6-122 1-90 (143)
41 PRK08105 flavodoxin; Provision 99.6 3.8E-15 8.3E-20 109.4 11.0 121 2-145 1-122 (149)
42 PF00258 Flavodoxin_1: Flavodo 99.6 1.1E-14 2.3E-19 106.3 10.2 120 7-145 1-125 (143)
43 COG1182 AcpD Acyl carrier prot 99.6 6.7E-14 1.4E-18 105.3 13.2 141 2-142 1-172 (202)
44 PRK00871 glutathione-regulated 99.6 2.5E-14 5.5E-19 107.3 10.9 129 5-145 2-143 (176)
45 COG2249 MdaB Putative NADPH-qu 99.6 1.1E-14 2.4E-19 110.5 9.0 114 4-119 2-125 (189)
46 COG4635 HemG Flavodoxin [Energ 99.6 1.1E-14 2.3E-19 104.9 7.2 107 4-136 2-110 (175)
47 PRK05723 flavodoxin; Provision 99.5 1.5E-12 3.3E-17 95.6 13.8 118 4-145 2-123 (151)
48 PRK10953 cysJ sulfite reductas 99.4 2.6E-12 5.7E-17 113.3 14.0 121 2-144 61-182 (600)
49 KOG4530 Predicted flavoprotein 99.4 9.8E-13 2.1E-17 94.6 7.8 131 4-142 12-150 (199)
50 TIGR01931 cysJ sulfite reducta 99.4 1.5E-11 3.3E-16 108.8 13.8 120 3-144 59-179 (597)
51 PRK03600 nrdI ribonucleotide r 99.0 9E-09 1.9E-13 74.0 11.0 121 4-192 2-128 (134)
52 TIGR00333 nrdI ribonucleoside- 98.7 1.4E-07 3.1E-12 66.8 9.9 75 7-120 1-76 (125)
53 PRK02551 flavoprotein NrdI; Pr 98.5 1.2E-06 2.5E-11 64.4 10.1 139 2-195 1-152 (154)
54 KOG1159 NADP-dependent flavopr 98.4 1.8E-06 3.9E-11 73.0 9.3 118 4-142 2-121 (574)
55 COG1780 NrdI Protein involved 97.8 0.0003 6.4E-09 50.0 9.1 128 5-199 3-136 (141)
56 PF07972 Flavodoxin_NdrI: NrdI 97.8 0.00013 2.8E-09 51.4 7.1 77 7-117 1-82 (122)
57 COG0369 CysJ Sulfite reductase 97.0 0.0042 9.1E-08 55.2 9.1 118 3-142 48-166 (587)
58 PRK10427 putative PTS system f 96.7 0.0082 1.8E-07 41.9 6.7 65 1-80 1-67 (114)
59 PRK10310 PTS system galactitol 96.3 0.011 2.4E-07 39.8 4.9 37 3-40 3-39 (94)
60 PRK07053 glutamine amidotransf 96.2 0.019 4E-07 45.4 6.8 59 1-82 1-60 (234)
61 COG1440 CelA Phosphotransferas 96.0 0.073 1.6E-06 36.0 7.7 81 2-115 1-81 (102)
62 COG1445 FrwB Phosphotransferas 95.5 0.067 1.5E-06 37.4 6.3 63 3-80 2-66 (122)
63 PRK10499 PTS system N,N'-diace 95.3 0.39 8.4E-06 33.0 9.7 79 2-115 3-81 (106)
64 TIGR00853 pts-lac PTS system, 95.1 0.035 7.5E-07 37.4 3.9 38 2-41 3-40 (95)
65 KOG1160 Fe-S oxidoreductase [E 95.1 0.26 5.7E-06 42.0 9.6 92 4-119 48-144 (601)
66 PRK09590 celB cellobiose phosp 94.7 0.059 1.3E-06 37.0 4.1 81 2-115 1-83 (104)
67 PF02302 PTS_IIB: PTS system, 94.4 0.18 4E-06 33.1 5.9 59 4-82 1-59 (90)
68 PRK13143 hisH imidazole glycer 93.7 0.41 8.8E-06 36.7 7.5 46 4-79 2-47 (200)
69 COG3414 SgaB Phosphotransferas 93.6 0.23 5.1E-06 33.3 5.2 32 2-34 1-32 (93)
70 cd05565 PTS_IIB_lactose PTS_II 93.2 0.17 3.7E-06 34.4 4.1 78 4-114 2-79 (99)
71 PRK06490 glutamine amidotransf 93.1 0.56 1.2E-05 37.1 7.6 34 3-41 8-41 (239)
72 PF06283 ThuA: Trehalose utili 92.7 0.99 2.1E-05 34.9 8.3 84 4-114 1-88 (217)
73 cd05564 PTS_IIB_chitobiose_lic 92.5 0.21 4.5E-06 33.7 3.8 79 4-115 1-79 (96)
74 cd05566 PTS_IIB_galactitol PTS 92.4 0.36 7.7E-06 31.7 4.8 34 3-37 1-34 (89)
75 PRK11574 oxidative-stress-resi 90.4 1.6 3.5E-05 33.1 7.2 104 1-117 1-109 (196)
76 TIGR00829 FRU PTS system, fruc 90.2 1.3 2.8E-05 29.2 5.6 59 7-80 2-62 (85)
77 cd05569 PTS_IIB_fructose PTS_I 90.2 1.4 3E-05 29.6 5.9 60 6-80 2-63 (96)
78 PRK13146 hisH imidazole glycer 89.5 1.2 2.7E-05 34.3 6.0 49 1-78 1-49 (209)
79 PRK09065 glutamine amidotransf 89.2 3.2 7E-05 32.7 8.3 75 2-96 1-84 (237)
80 PRK11404 putative PTS system 89.1 1.4 2.9E-05 38.7 6.5 59 4-77 5-65 (482)
81 PRK08250 glutamine amidotransf 88.9 3.2 6.9E-05 32.7 8.0 55 4-81 2-57 (235)
82 cd05567 PTS_IIB_mannitol PTS_I 88.3 1.5 3.4E-05 28.7 5.0 35 3-38 1-35 (87)
83 PRK06895 putative anthranilate 87.3 7.5 0.00016 29.4 9.0 51 4-80 3-54 (190)
84 PRK05637 anthranilate synthase 86.9 12 0.00026 28.9 9.9 34 2-41 1-34 (208)
85 PRK01175 phosphoribosylformylg 86.6 6.6 0.00014 31.6 8.6 54 3-79 4-57 (261)
86 PRK10712 PTS system fructose-s 86.3 2.4 5.2E-05 37.9 6.5 63 3-80 104-168 (563)
87 cd00133 PTS_IIB PTS_IIB: subun 86.0 2.6 5.7E-05 26.5 5.1 30 4-34 1-30 (84)
88 CHL00188 hisH imidazole glycer 85.9 3.2 6.9E-05 32.2 6.3 48 1-79 1-48 (210)
89 PRK11780 isoprenoid biosynthes 85.3 4.2 9.1E-05 31.7 6.8 135 2-144 1-173 (217)
90 COG0118 HisH Glutamine amidotr 84.2 4.3 9.4E-05 31.2 6.1 82 1-116 1-83 (204)
91 cd05568 PTS_IIB_bgl_like PTS_I 83.6 2.3 5.1E-05 27.2 4.1 27 3-29 1-27 (85)
92 PRK13608 diacylglycerol glucos 83.4 2 4.4E-05 36.3 4.6 41 2-43 5-48 (391)
93 cd05563 PTS_IIB_ascorbate PTS_ 83.1 3.8 8.2E-05 26.5 4.9 30 4-34 1-30 (86)
94 COG2910 Putative NADH-flavin r 83.0 11 0.00025 28.7 7.8 85 4-96 2-88 (211)
95 PRK13525 glutamine amidotransf 82.8 4.2 9.1E-05 30.9 5.7 12 67-78 35-46 (189)
96 TIGR01737 FGAM_synth_I phospho 82.0 11 0.00024 29.4 8.0 48 4-79 2-49 (227)
97 PF00289 CPSase_L_chain: Carba 81.9 4.3 9.3E-05 28.0 5.0 106 1-145 1-106 (110)
98 PRK13055 putative lipid kinase 81.7 6 0.00013 32.9 6.7 40 1-41 1-42 (334)
99 COG1810 Uncharacterized protei 81.1 22 0.00048 27.7 9.0 115 1-148 1-116 (224)
100 PRK09765 PTS system 2-O-a-mann 81.1 5.3 0.00011 36.3 6.5 62 4-80 165-228 (631)
101 PRK05282 (alpha)-aspartyl dipe 80.4 5 0.00011 31.7 5.5 14 65-78 74-87 (233)
102 PRK13170 hisH imidazole glycer 79.6 7.2 0.00016 29.7 6.0 43 4-76 2-44 (196)
103 cd03147 GATase1_Ydr533c_like T 79.2 10 0.00022 29.8 6.9 43 67-116 91-136 (231)
104 PRK01372 ddl D-alanine--D-alan 79.1 7.2 0.00016 31.6 6.3 42 1-43 3-47 (304)
105 PRK09548 PTS system ascorbate- 78.9 3.8 8.2E-05 36.8 4.8 35 3-38 507-541 (602)
106 PRK11880 pyrroline-5-carboxyla 78.6 15 0.00032 29.2 7.9 16 66-81 58-73 (267)
107 cd01748 GATase1_IGP_Synthase T 77.6 15 0.00032 27.9 7.3 45 5-79 1-45 (198)
108 PRK11559 garR tartronate semia 76.8 24 0.00052 28.5 8.7 118 1-146 1-122 (296)
109 PRK11538 ribosome-associated p 75.0 12 0.00025 25.7 5.4 48 16-87 3-50 (105)
110 PRK03619 phosphoribosylformylg 74.9 25 0.00054 27.3 8.0 47 4-78 2-49 (219)
111 PRK04155 chaperone protein Hch 74.9 14 0.0003 30.2 6.7 39 3-42 50-100 (287)
112 cd03825 GT1_wcfI_like This fam 74.5 17 0.00037 29.5 7.4 39 4-43 2-41 (365)
113 COG3340 PepE Peptidase E [Amin 74.4 13 0.00028 29.0 6.0 13 66-78 80-92 (224)
114 cd03142 GATase1_ThuA Type 1 gl 74.4 23 0.0005 27.6 7.6 61 19-97 24-86 (215)
115 COG1597 LCB5 Sphingosine kinas 73.9 14 0.00031 30.3 6.6 42 1-43 1-44 (301)
116 PF13380 CoA_binding_2: CoA bi 73.8 15 0.00031 25.5 5.8 107 3-145 1-109 (116)
117 PRK05928 hemD uroporphyrinogen 72.3 9.2 0.0002 29.7 5.1 25 66-97 48-72 (249)
118 PRK13054 lipid kinase; Reviewe 72.2 17 0.00038 29.5 6.8 38 1-40 2-39 (300)
119 COG1927 Mtd Coenzyme F420-depe 71.8 45 0.00098 26.0 11.4 95 1-115 1-95 (277)
120 PF01866 Diphthamide_syn: Puta 70.6 13 0.00029 30.5 5.8 43 3-46 210-253 (307)
121 TIGR00514 accC acetyl-CoA carb 70.6 38 0.00083 29.3 8.9 33 1-40 1-33 (449)
122 PRK05665 amidotransferase; Pro 70.5 35 0.00075 27.0 7.9 18 67-84 54-72 (240)
123 cd01741 GATase1_1 Subgroup of 69.6 20 0.00043 26.8 6.2 54 4-78 1-54 (188)
124 PRK13527 glutamine amidotransf 69.4 31 0.00067 26.2 7.3 48 4-78 2-51 (200)
125 cd01750 GATase1_CobQ Type 1 gl 69.4 22 0.00048 27.0 6.4 46 6-80 2-47 (194)
126 PRK08591 acetyl-CoA carboxylas 69.1 37 0.00081 29.2 8.5 34 1-41 1-34 (451)
127 PRK10125 putative glycosyl tra 69.0 14 0.00029 31.6 5.7 39 4-43 2-41 (405)
128 PLN02617 imidazole glycerol ph 68.4 22 0.00048 31.8 6.9 46 3-78 7-52 (538)
129 TIGR01019 sucCoAalpha succinyl 68.3 64 0.0014 26.3 9.7 106 13-145 12-121 (286)
130 PRK14571 D-alanyl-alanine synt 68.3 29 0.00063 28.1 7.3 38 4-42 2-42 (299)
131 PRK11914 diacylglycerol kinase 68.1 16 0.00034 29.8 5.7 39 2-41 8-48 (306)
132 PRK13059 putative lipid kinase 68.0 26 0.00057 28.4 7.0 39 3-42 2-42 (295)
133 PRK00861 putative lipid kinase 67.8 26 0.00057 28.4 7.0 40 1-42 1-42 (300)
134 PRK13609 diacylglycerol glucos 67.7 11 0.00024 31.5 4.9 39 3-42 5-44 (380)
135 TIGR00322 diphth2_R diphthamid 67.1 16 0.00035 30.4 5.6 43 3-46 233-276 (332)
136 PRK10017 colanic acid biosynth 67.1 84 0.0018 27.2 11.1 50 66-121 113-162 (426)
137 PRK13141 hisH imidazole glycer 65.8 29 0.00064 26.4 6.5 45 5-79 2-46 (205)
138 COG0693 ThiJ Putative intracel 65.1 46 0.00099 24.8 7.4 104 1-116 1-108 (188)
139 COG1587 HemD Uroporphyrinogen- 64.9 43 0.00092 26.4 7.5 58 21-97 136-195 (248)
140 COG0240 GpsA Glycerol-3-phosph 64.9 82 0.0018 26.3 9.8 80 4-96 3-91 (329)
141 PF09314 DUF1972: Domain of un 64.8 60 0.0013 24.7 9.7 61 2-80 1-65 (185)
142 PRK00094 gpsA NAD(P)H-dependen 64.7 37 0.0008 27.6 7.3 25 66-96 67-91 (325)
143 PRK02645 ppnK inorganic polyph 64.5 13 0.00029 30.5 4.6 37 2-39 3-39 (305)
144 TIGR01855 IMP_synth_hisH imida 64.0 22 0.00047 27.0 5.5 44 6-79 2-45 (196)
145 PRK14177 bifunctional 5,10-met 64.0 79 0.0017 25.8 11.4 39 4-43 35-73 (284)
146 PRK15005 universal stress prot 63.6 16 0.00034 25.7 4.4 41 1-42 1-42 (144)
147 PF13192 Thioredoxin_3: Thiore 63.4 21 0.00045 22.5 4.5 37 4-42 2-38 (76)
148 COG0287 TyrA Prephenate dehydr 63.3 17 0.00036 29.5 4.9 63 18-82 13-76 (279)
149 PRK07765 para-aminobenzoate sy 63.1 65 0.0014 24.9 8.0 54 4-79 2-56 (214)
150 PF03446 NAD_binding_2: NAD bi 62.7 46 0.001 24.3 6.9 118 3-147 2-121 (163)
151 cd03132 GATase1_catalase Type 62.3 40 0.00087 23.8 6.4 100 3-116 2-104 (142)
152 KOG3179 Predicted glutamine sy 62.3 73 0.0016 24.8 8.6 58 3-81 5-70 (245)
153 PLN02832 glutamine amidotransf 62.2 42 0.00091 26.8 6.8 13 66-78 34-46 (248)
154 PRK14179 bifunctional 5,10-met 62.2 86 0.0019 25.6 10.7 110 4-119 34-170 (284)
155 cd04962 GT1_like_5 This family 62.2 8.3 0.00018 31.6 3.1 37 4-41 2-38 (371)
156 PRK11199 tyrA bifunctional cho 62.0 19 0.00041 30.5 5.2 56 3-82 99-154 (374)
157 PRK00726 murG undecaprenyldiph 62.0 12 0.00026 30.9 4.0 39 1-42 1-39 (357)
158 PRK06444 prephenate dehydrogen 61.7 13 0.00028 28.5 3.8 27 4-36 2-28 (197)
159 PF00763 THF_DHG_CYH: Tetrahyd 61.4 52 0.0011 22.8 6.5 77 3-90 30-107 (117)
160 PRK01231 ppnK inorganic polyph 61.2 17 0.00037 29.7 4.6 37 2-39 4-40 (295)
161 PF02410 Oligomerisation: Olig 60.9 19 0.00041 24.2 4.1 44 20-87 2-45 (100)
162 COG3360 Uncharacterized conser 60.6 16 0.00035 22.8 3.3 27 3-29 7-33 (71)
163 PF00117 GATase: Glutamine ami 60.3 54 0.0012 24.4 7.0 61 13-96 7-68 (192)
164 PRK00074 guaA GMP synthase; Re 59.5 42 0.00091 29.8 7.1 34 1-40 2-35 (511)
165 PF08357 SEFIR: SEFIR domain; 59.1 17 0.00036 26.1 3.9 67 3-81 1-70 (150)
166 PF01695 IstB_IS21: IstB-like 58.7 5.3 0.00012 30.0 1.2 68 4-78 48-116 (178)
167 PRK08727 hypothetical protein; 58.4 87 0.0019 24.4 10.5 57 5-77 43-100 (233)
168 PF00781 DAGK_cat: Diacylglyce 58.3 47 0.001 23.1 6.0 37 4-43 1-39 (130)
169 cd04436 DEP_fRgd2 DEP (Disheve 58.1 47 0.001 21.8 5.3 15 180-194 46-60 (84)
170 cd03134 GATase1_PfpI_like A ty 57.9 48 0.001 23.9 6.3 81 22-116 17-103 (165)
171 cd00877 Ran Ran (Ras-related n 57.7 70 0.0015 23.1 7.4 46 66-116 68-113 (166)
172 PRK14194 bifunctional 5,10-met 57.3 1.1E+02 0.0024 25.2 12.1 109 4-118 35-170 (301)
173 TIGR00147 lipid kinase, YegS/R 57.2 49 0.0011 26.6 6.7 41 2-43 1-43 (293)
174 COG4551 Predicted protein tyro 56.4 10 0.00022 25.4 2.0 40 65-116 45-84 (109)
175 PRK10834 vancomycin high tempe 56.3 27 0.00059 27.7 4.8 48 67-118 41-91 (239)
176 cd05212 NAD_bind_m-THF_DH_Cycl 56.1 21 0.00045 25.8 3.9 53 4-81 30-82 (140)
177 cd03802 GT1_AviGT4_like This f 56.0 24 0.00053 28.3 4.8 39 4-43 2-47 (335)
178 TIGR03682 arCOG04112 arCOG0411 56.0 40 0.00087 27.8 6.0 43 3-46 213-256 (308)
179 PRK14619 NAD(P)H-dependent gly 55.8 1.1E+02 0.0024 24.9 9.8 62 4-96 6-67 (308)
180 COG5426 Uncharacterized membra 55.8 13 0.00028 28.5 2.8 44 19-77 33-76 (254)
181 PRK06545 prephenate dehydrogen 55.7 63 0.0014 27.1 7.3 70 19-96 11-80 (359)
182 PRK14190 bifunctional 5,10-met 55.6 1.1E+02 0.0025 24.9 11.9 39 4-43 34-72 (284)
183 PF03575 Peptidase_S51: Peptid 55.3 15 0.00031 26.7 3.0 40 21-77 3-42 (154)
184 KOG0093 GTPase Rab3, small G p 55.2 56 0.0012 24.1 5.9 107 2-115 21-134 (193)
185 COG3828 Uncharacterized protei 55.2 8.5 0.00018 29.5 1.8 39 1-40 2-41 (239)
186 COG2984 ABC-type uncharacteriz 55.0 26 0.00056 29.0 4.6 40 3-43 160-199 (322)
187 PRK13566 anthranilate synthase 54.5 93 0.002 29.0 8.6 33 4-42 528-560 (720)
188 PRK07178 pyruvate carboxylase 54.4 1.5E+02 0.0032 25.9 9.8 35 1-42 1-35 (472)
189 KOG1158 NADP/FAD dependent oxi 54.3 22 0.00047 32.4 4.5 91 3-117 47-139 (645)
190 PRK10474 putative PTS system f 54.2 32 0.00069 22.6 4.2 46 20-80 3-48 (88)
191 PRK05788 cobalamin biosynthesi 54.0 31 0.00066 28.6 5.0 24 4-29 5-28 (315)
192 COG0394 Wzb Protein-tyrosine-p 53.8 22 0.00047 25.6 3.7 28 1-29 1-28 (139)
193 PRK08655 prephenate dehydrogen 53.0 57 0.0012 28.3 6.7 78 4-97 2-79 (437)
194 PRK06217 hypothetical protein; 52.9 21 0.00046 26.6 3.7 26 1-28 1-26 (183)
195 TIGR00888 guaA_Nterm GMP synth 52.9 88 0.0019 23.4 7.1 24 13-41 8-31 (188)
196 PRK01966 ddl D-alanyl-alanine 52.9 36 0.00078 28.1 5.4 41 1-42 1-45 (333)
197 PRK00994 F420-dependent methyl 52.7 1.2E+02 0.0026 24.2 10.0 76 1-90 1-78 (277)
198 PRK02261 methylaspartate mutas 52.4 84 0.0018 22.5 12.5 75 2-97 1-79 (137)
199 cd01740 GATase1_FGAR_AT Type 1 52.3 85 0.0018 24.6 7.2 42 17-81 13-55 (238)
200 TIGR01692 HIBADH 3-hydroxyisob 51.0 1.2E+02 0.0026 24.4 8.0 108 19-147 7-117 (288)
201 cd06312 PBP1_ABC_sugar_binding 50.7 83 0.0018 24.5 7.0 38 4-42 1-40 (271)
202 TIGR00272 DPH2 diphthamide bio 50.7 44 0.00095 29.6 5.7 44 3-47 282-326 (496)
203 cd01080 NAD_bind_m-THF_DH_Cycl 50.4 48 0.001 24.7 5.2 18 65-82 82-99 (168)
204 PF04127 DFP: DNA / pantothena 50.2 5.5 0.00012 30.2 0.1 83 3-86 4-98 (185)
205 TIGR01505 tartro_sem_red 2-hyd 50.2 1.2E+02 0.0026 24.4 7.9 110 19-146 10-119 (291)
206 PF01210 NAD_Gly3P_dh_N: NAD-d 50.0 19 0.0004 26.3 2.9 28 65-98 64-91 (157)
207 cd01452 VWA_26S_proteasome_sub 49.8 34 0.00074 26.0 4.3 38 4-42 109-146 (187)
208 TIGR00872 gnd_rel 6-phosphoglu 49.5 1.4E+02 0.003 24.2 8.3 110 19-147 11-120 (298)
209 PRK14187 bifunctional 5,10-met 49.5 1.5E+02 0.0032 24.4 11.9 39 4-43 34-72 (294)
210 PRK13181 hisH imidazole glycer 49.3 81 0.0017 23.9 6.5 44 5-78 2-45 (199)
211 PRK10712 PTS system fructose-s 49.1 33 0.00071 30.9 4.7 32 4-36 2-35 (563)
212 TIGR01724 hmd_rel H2-forming N 49.0 1.6E+02 0.0035 24.7 10.6 21 173-193 166-186 (341)
213 PF07881 Fucose_iso_N1: L-fuco 48.8 48 0.001 24.8 4.7 112 3-142 4-133 (171)
214 PF02882 THF_DHG_CYH_C: Tetrah 48.7 37 0.0008 25.1 4.3 19 65-83 74-92 (160)
215 PRK05678 succinyl-CoA syntheta 48.6 1.5E+02 0.0032 24.2 10.9 63 66-145 58-123 (291)
216 COG2454 Uncharacterized conser 48.2 32 0.0007 26.5 3.9 71 4-90 130-200 (211)
217 PRK06111 acetyl-CoA carboxylas 48.2 1.8E+02 0.0039 25.0 9.3 34 1-41 1-34 (450)
218 cd03805 GT1_ALG2_like This fam 47.8 31 0.00068 28.5 4.3 36 4-40 2-38 (392)
219 PRK05670 anthranilate synthase 47.7 1.2E+02 0.0025 22.7 8.2 32 5-42 2-33 (189)
220 PRK14325 (dimethylallyl)adenos 47.6 78 0.0017 27.4 6.8 25 1-25 2-29 (444)
221 PRK14182 bifunctional 5,10-met 47.5 1.5E+02 0.0034 24.1 12.0 40 3-43 31-70 (282)
222 PF01113 DapB_N: Dihydrodipico 47.4 87 0.0019 21.7 5.9 40 65-118 62-101 (124)
223 PF04723 GRDA: Glycine reducta 47.2 84 0.0018 22.7 5.6 62 104-191 2-63 (150)
224 PLN03071 GTP-binding nuclear p 47.2 1.1E+02 0.0024 23.5 7.0 44 67-115 82-125 (219)
225 PRK08818 prephenate dehydrogen 47.1 36 0.00078 28.9 4.5 16 66-81 47-62 (370)
226 COG1736 DPH2 Diphthamide synth 47.0 59 0.0013 27.3 5.6 43 3-46 238-281 (347)
227 cd03146 GAT1_Peptidase_E Type 46.9 85 0.0018 24.1 6.3 24 65-92 75-98 (212)
228 PRK07567 glutamine amidotransf 46.8 63 0.0014 25.5 5.6 13 67-79 48-61 (242)
229 TIGR00090 iojap_ybeB iojap-lik 46.4 48 0.001 22.3 4.2 48 21-96 3-50 (99)
230 PRK10026 arsenate reductase; P 46.2 60 0.0013 23.5 5.0 36 4-45 3-39 (141)
231 PF13460 NAD_binding_10: NADH( 46.0 45 0.00098 24.3 4.5 76 18-97 9-86 (183)
232 PF09822 ABC_transp_aux: ABC-t 45.7 1.5E+02 0.0033 23.5 8.6 66 69-143 196-266 (271)
233 cd03169 GATase1_PfpI_1 Type 1 45.5 1.2E+02 0.0026 22.3 7.7 41 69-116 75-117 (180)
234 PRK12491 pyrroline-5-carboxyla 45.4 1.4E+02 0.003 24.0 7.5 25 66-96 59-83 (272)
235 PRK09212 pyruvate dehydrogenas 45.4 1.2E+02 0.0026 25.2 7.2 70 13-96 209-279 (327)
236 cd01743 GATase1_Anthranilate_S 45.3 1.2E+02 0.0026 22.5 6.7 42 16-80 11-53 (184)
237 PRK08229 2-dehydropantoate 2-r 45.2 1.4E+02 0.003 24.5 7.7 17 66-82 69-85 (341)
238 KOG2728 Uncharacterized conser 45.1 33 0.00071 27.5 3.6 34 79-118 8-41 (302)
239 PF02593 dTMP_synthase: Thymid 45.1 1.5E+02 0.0032 23.2 9.4 111 7-148 2-113 (217)
240 COG3019 Predicted metal-bindin 44.7 1.2E+02 0.0026 22.0 6.1 66 6-88 28-94 (149)
241 PF10662 PduV-EutP: Ethanolami 44.6 1.1E+02 0.0023 22.3 6.0 24 2-26 1-24 (143)
242 TIGR01815 TrpE-clade3 anthrani 44.6 1.3E+02 0.0029 28.0 7.9 33 3-41 517-549 (717)
243 COG0047 PurL Phosphoribosylfor 44.4 72 0.0016 25.1 5.4 39 1-44 1-39 (231)
244 CHL00194 ycf39 Ycf39; Provisio 44.3 57 0.0012 26.5 5.2 72 4-82 2-76 (317)
245 PF10087 DUF2325: Uncharacteri 44.2 92 0.002 20.5 5.9 40 65-114 43-82 (97)
246 PRK03372 ppnK inorganic polyph 44.2 50 0.0011 27.2 4.8 37 2-39 5-41 (306)
247 TIGR00412 redox_disulf_2 small 43.8 69 0.0015 20.0 4.5 34 8-42 5-38 (76)
248 PRK14188 bifunctional 5,10-met 43.8 1.8E+02 0.0039 23.9 8.0 41 3-44 33-73 (296)
249 PRK14186 bifunctional 5,10-met 43.6 1.8E+02 0.004 23.9 7.9 39 4-43 34-72 (297)
250 PRK05642 DNA replication initi 43.5 50 0.0011 25.8 4.6 38 4-43 46-84 (234)
251 cd03820 GT1_amsD_like This fam 43.4 48 0.001 26.1 4.6 39 4-43 1-41 (348)
252 PRK08116 hypothetical protein; 43.4 1.2E+02 0.0026 24.3 6.8 36 5-42 116-152 (268)
253 PRK13337 putative lipid kinase 43.3 1.2E+02 0.0026 24.7 6.9 40 2-42 1-42 (304)
254 COG1484 DnaC DNA replication p 43.1 15 0.00034 29.2 1.7 67 4-77 106-174 (254)
255 PRK11200 grxA glutaredoxin 1; 42.9 86 0.0019 19.9 5.2 39 4-42 2-40 (85)
256 PRK14169 bifunctional 5,10-met 42.5 1.9E+02 0.0041 23.6 8.1 109 4-118 32-167 (282)
257 COG0512 PabA Anthranilate/para 42.2 1.6E+02 0.0034 22.6 7.7 68 4-95 3-74 (191)
258 PRK14167 bifunctional 5,10-met 42.2 1.9E+02 0.0042 23.7 7.8 40 4-44 33-72 (297)
259 TIGR01133 murG undecaprenyldip 42.1 40 0.00087 27.4 4.1 34 4-39 2-35 (348)
260 PLN02347 GMP synthetase 41.6 2.6E+02 0.0057 25.1 9.3 32 3-40 11-42 (536)
261 PRK13152 hisH imidazole glycer 41.5 81 0.0018 23.9 5.4 44 5-78 2-45 (201)
262 cd01867 Rab8_Rab10_Rab13_like 41.4 1E+02 0.0022 22.0 5.8 47 65-115 70-116 (167)
263 COG1763 MobB Molybdopterin-gua 41.4 64 0.0014 23.9 4.6 85 1-97 1-90 (161)
264 PRK10792 bifunctional 5,10-met 41.3 2E+02 0.0043 23.5 7.9 39 4-43 35-73 (285)
265 PF01220 DHquinase_II: Dehydro 41.3 81 0.0018 22.8 4.9 76 4-96 2-91 (140)
266 cd06388 PBP1_iGluR_AMPA_GluR4 41.1 1.2E+02 0.0027 25.4 6.9 38 3-43 125-162 (371)
267 PRK07417 arogenate dehydrogena 41.1 1.4E+02 0.003 23.9 6.9 67 4-81 2-68 (279)
268 COG2085 Predicted dinucleotide 41.1 1.6E+02 0.0035 22.9 6.8 30 65-96 55-84 (211)
269 PRK14189 bifunctional 5,10-met 40.5 2E+02 0.0042 23.6 7.6 40 3-43 33-72 (285)
270 PLN02605 monogalactosyldiacylg 40.3 43 0.00093 28.1 4.0 38 5-43 1-41 (382)
271 cd03030 GRX_SH3BGR Glutaredoxi 40.0 81 0.0018 20.9 4.5 35 7-42 4-40 (92)
272 COG0386 BtuE Glutathione perox 40.0 85 0.0018 23.2 4.8 42 104-145 22-64 (162)
273 cd06578 HemD Uroporphyrinogen- 40.0 96 0.0021 23.5 5.7 56 20-96 10-68 (239)
274 PF07689 KaiB: KaiB domain; I 39.7 1E+02 0.0022 20.1 4.8 64 11-97 6-71 (82)
275 PF02662 FlpD: Methyl-viologen 39.6 1.3E+02 0.0029 21.0 8.6 63 68-137 50-123 (124)
276 TIGR01823 PabB-fungal aminodeo 39.4 3.3E+02 0.0071 25.6 10.0 54 4-77 7-60 (742)
277 CHL00197 carA carbamoyl-phosph 39.3 1.5E+02 0.0032 25.4 7.0 29 4-40 194-222 (382)
278 cd03140 GATase1_PfpI_3 Type 1 39.3 50 0.0011 24.2 3.8 41 69-116 59-100 (170)
279 cd04951 GT1_WbdM_like This fam 39.3 64 0.0014 26.0 4.9 38 4-42 1-39 (360)
280 PF11965 DUF3479: Domain of un 39.1 85 0.0018 23.4 4.9 77 4-95 2-81 (164)
281 PRK06761 hypothetical protein; 38.8 82 0.0018 25.6 5.2 37 1-39 1-38 (282)
282 cd03129 GAT1_Peptidase_E_like 38.8 1.5E+02 0.0032 22.6 6.5 23 65-91 75-97 (210)
283 COG2210 Peroxiredoxin family p 38.7 84 0.0018 22.6 4.6 39 1-40 1-39 (137)
284 PRK14175 bifunctional 5,10-met 38.3 82 0.0018 25.7 5.1 53 3-80 159-211 (286)
285 COG3412 Uncharacterized protei 38.2 53 0.0012 23.3 3.5 37 1-43 1-37 (129)
286 PF01380 SIS: SIS domain SIS d 38.2 1.2E+02 0.0026 20.6 5.5 35 3-39 53-87 (131)
287 PRK14180 bifunctional 5,10-met 37.7 2.3E+02 0.0049 23.2 7.9 110 3-118 32-169 (282)
288 TIGR02717 AcCoA-syn-alpha acet 37.5 2.8E+02 0.006 24.1 11.7 63 70-145 64-128 (447)
289 cd04124 RabL2 RabL2 subfamily. 37.4 1.5E+02 0.0033 21.1 8.7 47 65-116 67-113 (161)
290 PF13507 GATase_5: CobB/CobQ-l 37.4 43 0.00094 26.9 3.4 52 3-77 2-53 (259)
291 PRK00758 GMP synthase subunit 37.4 1.6E+02 0.0035 21.8 6.4 30 5-40 2-31 (184)
292 PRK12480 D-lactate dehydrogena 36.7 2.2E+02 0.0048 23.6 7.6 55 19-83 157-211 (330)
293 PF02153 PDH: Prephenate dehyd 36.7 2.1E+02 0.0046 22.6 9.4 27 65-97 40-66 (258)
294 PRK15083 PTS system mannitol-s 36.6 62 0.0013 29.6 4.6 37 3-40 379-416 (639)
295 TIGR00873 gnd 6-phosphoglucona 36.5 3E+02 0.0064 24.2 8.9 146 19-195 10-159 (467)
296 TIGR02069 cyanophycinase cyano 36.4 1.5E+02 0.0032 23.6 6.3 14 65-78 77-90 (250)
297 PRK07206 hypothetical protein; 36.4 43 0.00093 28.4 3.5 34 1-41 1-34 (416)
298 cd01866 Rab2 Rab2 subfamily. 36.3 1.6E+02 0.0035 21.0 7.9 47 66-116 72-118 (168)
299 PF11382 DUF3186: Protein of u 36.3 70 0.0015 26.3 4.5 51 90-144 66-116 (308)
300 PRK14568 vanB D-alanine--D-lac 36.2 1E+02 0.0022 25.6 5.6 39 3-42 4-45 (343)
301 cd03812 GT1_CapH_like This fam 36.1 2.3E+02 0.0049 22.8 8.7 40 4-44 1-41 (358)
302 PRK14176 bifunctional 5,10-met 36.1 2.4E+02 0.0053 23.1 7.8 39 4-43 40-78 (287)
303 PRK06835 DNA replication prote 36.0 67 0.0014 26.8 4.4 69 4-77 184-253 (329)
304 COG2044 Predicted peroxiredoxi 36.0 1E+02 0.0022 21.7 4.5 41 1-42 1-43 (120)
305 TIGR00130 frhD coenzyme F420-r 35.9 1.7E+02 0.0036 21.2 6.6 75 2-91 2-81 (153)
306 cd00578 L-fuc_L-ara-isomerases 35.8 2.9E+02 0.0063 23.9 14.4 86 4-117 2-98 (452)
307 PRK15456 universal stress prot 35.5 90 0.002 21.8 4.6 40 1-42 1-41 (142)
308 PRK08939 primosomal protein Dn 35.4 38 0.00082 27.9 2.8 38 4-43 157-195 (306)
309 PRK02649 ppnK inorganic polyph 35.2 78 0.0017 26.1 4.6 37 2-39 1-37 (305)
310 PRK05339 PEP synthetase regula 35.1 1.5E+02 0.0032 24.1 6.0 40 1-43 1-42 (269)
311 PF01820 Dala_Dala_lig_N: D-al 35.0 1.2E+02 0.0026 20.9 5.0 39 4-43 2-43 (117)
312 PRK03708 ppnK inorganic polyph 34.8 78 0.0017 25.6 4.5 35 4-39 2-36 (277)
313 PRK14191 bifunctional 5,10-met 34.8 93 0.002 25.4 4.9 16 65-80 195-210 (285)
314 PRK14166 bifunctional 5,10-met 34.7 2.5E+02 0.0055 22.9 7.9 39 4-43 32-70 (282)
315 PLN02335 anthranilate synthase 34.5 2E+02 0.0044 22.3 6.7 33 4-42 20-52 (222)
316 PRK10264 hydrogenase 1 maturat 34.4 1.6E+02 0.0034 22.5 5.9 70 3-91 4-78 (195)
317 PRK06893 DNA replication initi 34.3 2.1E+02 0.0045 22.2 6.8 36 5-42 41-77 (229)
318 COG1393 ArsC Arsenate reductas 34.1 1.1E+02 0.0024 21.3 4.6 35 6-45 3-38 (117)
319 cd06354 PBP1_BmpA_PnrA_like Pe 34.1 2.3E+02 0.0049 22.1 8.7 37 4-41 1-41 (265)
320 PRK05479 ketol-acid reductoiso 33.9 2.8E+02 0.0061 23.2 7.7 56 19-80 28-83 (330)
321 PF04908 SH3BGR: SH3-binding, 33.8 1.1E+02 0.0025 20.6 4.5 38 4-42 2-41 (99)
322 PRK09273 hypothetical protein; 33.7 55 0.0012 25.4 3.3 36 4-42 2-38 (211)
323 PLN02683 pyruvate dehydrogenas 33.7 2.5E+02 0.0054 23.7 7.5 69 13-95 236-305 (356)
324 PF09651 Cas_APE2256: CRISPR-a 33.6 75 0.0016 22.7 3.8 38 5-43 24-61 (136)
325 PF08660 Alg14: Oligosaccharid 33.6 2E+02 0.0043 21.4 8.5 33 81-118 70-102 (170)
326 COG1435 Tdk Thymidine kinase [ 33.6 94 0.002 24.0 4.4 37 2-40 3-40 (201)
327 CHL00144 odpB pyruvate dehydro 33.5 1.5E+02 0.0032 24.6 6.1 69 13-95 209-278 (327)
328 cd03138 GATase1_AraC_2 AraC tr 33.2 52 0.0011 24.6 3.2 43 67-116 66-113 (195)
329 cd01864 Rab19 Rab19 subfamily. 33.2 1E+02 0.0022 21.9 4.7 46 66-115 71-116 (165)
330 PRK11391 etp phosphotyrosine-p 33.2 80 0.0017 22.7 4.0 27 1-28 1-27 (144)
331 cd04121 Rab40 Rab40 subfamily. 33.0 1.4E+02 0.0031 22.3 5.5 46 66-116 74-119 (189)
332 PRK14168 bifunctional 5,10-met 32.9 2.8E+02 0.0061 22.8 12.0 40 4-44 35-74 (297)
333 PRK14175 bifunctional 5,10-met 32.8 2.7E+02 0.006 22.7 8.0 108 4-117 34-168 (286)
334 KOG2884 26S proteasome regulat 32.7 1E+02 0.0022 24.3 4.4 39 4-43 109-147 (259)
335 PF13439 Glyco_transf_4: Glyco 32.6 1E+02 0.0022 21.7 4.5 31 12-43 10-40 (177)
336 TIGR00674 dapA dihydrodipicoli 32.5 1.3E+02 0.0029 24.1 5.6 29 69-97 92-120 (285)
337 cd03067 PDI_b_PDIR_N PDIb fami 32.5 1.2E+02 0.0026 20.8 4.3 46 3-50 20-68 (112)
338 cd03141 GATase1_Hsp31_like Typ 32.4 56 0.0012 25.3 3.2 43 67-116 87-132 (221)
339 cd01868 Rab11_like Rab11-like. 32.3 1.2E+02 0.0027 21.4 5.0 47 66-116 71-117 (165)
340 PRK05395 3-dehydroquinate dehy 32.0 1.2E+02 0.0027 22.0 4.7 79 3-97 2-93 (146)
341 PRK13142 hisH imidazole glycer 31.9 1.9E+02 0.0041 22.0 6.0 45 5-79 2-46 (192)
342 PRK10638 glutaredoxin 3; Provi 31.9 1.3E+02 0.0029 18.9 4.8 35 2-42 1-36 (83)
343 PF12076 Wax2_C: WAX2 C-termin 31.7 45 0.00097 24.7 2.3 26 13-39 4-29 (164)
344 PF13552 DUF4127: Protein of u 31.5 2.3E+02 0.0051 25.1 7.2 32 87-122 329-360 (497)
345 smart00175 RAB Rab subfamily o 31.4 1.8E+02 0.004 20.3 8.6 48 65-116 67-114 (164)
346 PRK14174 bifunctional 5,10-met 31.3 3E+02 0.0064 22.6 7.3 40 3-43 32-71 (295)
347 cd06259 YdcF-like YdcF-like. Y 31.3 1.1E+02 0.0025 21.6 4.6 60 73-138 3-64 (150)
348 PF04392 ABC_sub_bind: ABC tra 31.3 97 0.0021 24.9 4.6 40 3-43 132-171 (294)
349 PF01583 APS_kinase: Adenylyls 31.3 1.1E+02 0.0023 22.6 4.4 36 5-42 4-40 (156)
350 PRK09393 ftrA transcriptional 31.2 63 0.0014 26.4 3.5 43 67-116 72-115 (322)
351 PF05368 NmrA: NmrA-like famil 30.9 57 0.0012 25.0 3.1 47 65-118 59-105 (233)
352 cd04955 GT1_like_6 This family 30.6 80 0.0017 25.5 4.1 39 4-43 1-43 (363)
353 TIGR02654 circ_KaiB circadian 30.4 51 0.0011 21.8 2.2 63 11-96 12-76 (87)
354 PRK04539 ppnK inorganic polyph 30.4 1E+02 0.0023 25.2 4.6 37 2-39 5-41 (296)
355 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 30.4 1.8E+02 0.0039 20.6 5.6 47 66-116 70-116 (166)
356 cd03795 GT1_like_4 This family 30.3 84 0.0018 25.2 4.2 39 4-43 1-42 (357)
357 PRK05586 biotin carboxylase; V 30.2 2.9E+02 0.0063 23.8 7.6 31 1-38 1-31 (447)
358 PF02595 Gly_kinase: Glycerate 30.2 82 0.0018 26.8 4.0 40 4-43 2-44 (377)
359 COG1821 Predicted ATP-utilizin 30.2 1E+02 0.0022 24.9 4.3 84 4-92 2-95 (307)
360 PRK15453 phosphoribulokinase; 30.1 1.3E+02 0.0029 24.6 5.1 42 1-44 1-45 (290)
361 PRK14192 bifunctional 5,10-met 30.0 1.5E+02 0.0033 24.1 5.4 41 19-79 171-211 (283)
362 COG0022 AcoB Pyruvate/2-oxoglu 30.0 71 0.0015 26.4 3.4 31 14-45 209-239 (324)
363 KOG0068 D-3-phosphoglycerate d 29.9 2.9E+02 0.0063 23.5 7.0 71 66-144 87-175 (406)
364 PRK14170 bifunctional 5,10-met 29.7 3.1E+02 0.0068 22.4 7.9 41 3-44 32-72 (284)
365 PRK00436 argC N-acetyl-gamma-g 29.6 1.6E+02 0.0035 24.5 5.7 16 67-82 65-80 (343)
366 PRK14185 bifunctional 5,10-met 29.6 3.2E+02 0.0069 22.5 11.0 40 4-44 33-72 (293)
367 cd06302 PBP1_LsrB_Quorum_Sensi 29.5 2.9E+02 0.0063 21.9 8.2 33 5-38 2-35 (298)
368 PRK09301 circadian clock prote 29.4 58 0.0013 22.2 2.4 68 6-96 9-79 (103)
369 PRK06947 glucose-1-dehydrogena 29.3 65 0.0014 24.8 3.2 32 1-38 1-32 (248)
370 PRK03995 hypothetical protein; 29.3 1.9E+02 0.0041 23.4 5.8 23 5-27 3-25 (267)
371 PRK14191 bifunctional 5,10-met 29.3 3.2E+02 0.0069 22.4 7.8 40 4-44 33-72 (285)
372 PLN03139 formate dehydrogenase 29.0 3.7E+02 0.008 23.0 8.0 65 19-94 210-274 (386)
373 cd01989 STK_N The N-terminal d 29.0 1.7E+02 0.0037 20.3 5.1 15 67-81 100-114 (146)
374 PRK14184 bifunctional 5,10-met 29.0 3.2E+02 0.007 22.3 11.7 40 3-43 32-71 (286)
375 COG0799 Uncharacterized homolo 28.8 2.1E+02 0.0045 20.0 5.5 57 16-96 3-59 (115)
376 PF00071 Ras: Ras family; Int 28.8 84 0.0018 22.2 3.5 47 66-116 67-113 (162)
377 PRK00211 sulfur relay protein 28.8 1.6E+02 0.0034 20.4 4.7 40 2-43 1-43 (119)
378 PRK14618 NAD(P)H-dependent gly 28.8 3.3E+02 0.007 22.3 9.7 25 66-96 70-94 (328)
379 cd06348 PBP1_ABC_ligand_bindin 28.7 2.7E+02 0.0059 22.6 6.9 35 3-38 137-171 (344)
380 PRK14569 D-alanyl-alanine synt 28.7 1.2E+02 0.0025 24.7 4.6 38 3-41 4-44 (296)
381 PRK14193 bifunctional 5,10-met 28.6 3.3E+02 0.0071 22.3 7.8 110 3-118 33-169 (284)
382 cd03130 GATase1_CobB Type 1 gl 28.5 1.1E+02 0.0024 23.1 4.3 11 68-78 38-48 (198)
383 PRK14171 bifunctional 5,10-met 28.5 3.3E+02 0.0072 22.3 8.0 39 4-43 34-72 (288)
384 PLN02958 diacylglycerol kinase 28.5 2.2E+02 0.0047 25.1 6.5 38 3-41 112-152 (481)
385 cd04108 Rab36_Rab34 Rab34/Rab3 28.5 2.2E+02 0.0048 20.6 5.8 32 65-96 67-98 (170)
386 PRK06921 hypothetical protein; 28.3 93 0.002 24.9 3.9 37 4-42 118-156 (266)
387 PRK10126 tyrosine phosphatase; 28.1 1E+02 0.0022 22.1 3.8 27 1-28 1-27 (147)
388 PRK08118 topology modulation p 28.1 79 0.0017 23.2 3.3 27 2-29 1-27 (167)
389 cd06276 PBP1_FucR_like Ligand- 28.1 1.6E+02 0.0036 22.7 5.3 36 4-40 1-37 (247)
390 cd03148 GATase1_EcHsp31_like T 28.0 65 0.0014 25.3 2.9 29 68-96 94-125 (232)
391 PRK08410 2-hydroxyacid dehydro 27.9 2.9E+02 0.0062 22.7 6.8 60 19-95 156-216 (311)
392 PRK14172 bifunctional 5,10-met 27.8 3.3E+02 0.0073 22.1 7.7 39 4-43 34-72 (278)
393 cd04101 RabL4 RabL4 (Rab-like4 27.8 2.2E+02 0.0047 20.0 7.9 46 66-116 71-116 (164)
394 PF00885 DMRL_synthase: 6,7-di 27.8 1.5E+02 0.0032 21.5 4.5 40 3-43 4-47 (144)
395 PF07991 IlvN: Acetohydroxy ac 27.7 1.3E+02 0.0028 22.5 4.2 64 3-80 5-70 (165)
396 cd03808 GT1_cap1E_like This fa 27.4 1.1E+02 0.0024 24.1 4.3 38 4-43 1-38 (359)
397 PF00582 Usp: Universal stress 27.4 1.2E+02 0.0025 20.3 3.9 42 1-44 1-42 (140)
398 cd03811 GT1_WabH_like This fam 27.3 92 0.002 24.4 3.8 39 4-43 1-40 (353)
399 PLN02897 tetrahydrofolate dehy 27.1 3.8E+02 0.0083 22.6 8.0 109 4-118 88-225 (345)
400 PRK09599 6-phosphogluconate de 27.1 3.4E+02 0.0073 21.9 8.4 62 71-147 60-121 (301)
401 PF02780 Transketolase_C: Tran 26.9 71 0.0015 22.0 2.7 66 14-95 18-86 (124)
402 PRK07024 short chain dehydroge 26.8 77 0.0017 24.6 3.2 35 1-41 1-35 (257)
403 PRK14181 bifunctional 5,10-met 26.7 3.6E+02 0.0078 22.1 7.7 40 3-43 27-66 (287)
404 PRK08181 transposase; Validate 26.7 1.2E+02 0.0027 24.4 4.4 66 5-77 108-174 (269)
405 PRK03378 ppnK inorganic polyph 26.7 1.3E+02 0.0029 24.5 4.6 37 2-39 5-41 (292)
406 PRK13768 GTPase; Provisional 26.6 1.3E+02 0.0029 23.8 4.5 39 1-42 1-40 (253)
407 PTZ00182 3-methyl-2-oxobutanat 26.5 1.8E+02 0.004 24.5 5.5 67 14-94 242-309 (355)
408 TIGR00014 arsC arsenate reduct 26.3 1.6E+02 0.0034 20.2 4.3 35 7-45 2-36 (114)
409 PRK14183 bifunctional 5,10-met 26.2 3.6E+02 0.0078 22.0 7.2 108 4-117 33-167 (281)
410 PRK08084 DNA replication initi 26.1 1.5E+02 0.0033 23.0 4.8 37 4-42 46-83 (235)
411 smart00177 ARF ARF-like small 26.1 2.6E+02 0.0056 20.3 8.3 47 67-116 77-123 (175)
412 COG0680 HyaD Ni,Fe-hydrogenase 26.0 2.7E+02 0.0059 20.5 6.4 69 4-91 3-76 (160)
413 PF09314 DUF1972: Domain of un 25.9 1.4E+02 0.0031 22.6 4.4 34 108-141 2-37 (185)
414 cd05017 SIS_PGI_PMI_1 The memb 25.9 1.1E+02 0.0024 20.8 3.6 34 3-38 43-76 (119)
415 cd03821 GT1_Bme6_like This fam 25.9 84 0.0018 25.0 3.4 40 4-44 1-43 (375)
416 TIGR01383 not_thiJ DJ-1 family 25.8 74 0.0016 23.3 2.8 42 68-116 61-105 (179)
417 PRK13265 glycine/sarcosine/bet 25.7 2.6E+02 0.0057 20.2 5.5 62 104-191 3-64 (154)
418 PF09960 DUF2194: Uncharacteri 25.7 2.5E+02 0.0055 25.5 6.5 74 4-95 55-128 (585)
419 PLN02735 carbamoyl-phosphate s 25.7 6.6E+02 0.014 24.9 9.7 40 2-42 23-67 (1102)
420 PRK15461 NADH-dependent gamma- 25.4 3.6E+02 0.0079 21.7 8.3 121 3-147 2-122 (296)
421 cd03034 ArsC_ArsC Arsenate Red 25.4 1.7E+02 0.0037 19.9 4.4 34 7-45 2-36 (112)
422 PRK08903 DnaA regulatory inact 25.4 1.6E+02 0.0035 22.5 4.8 38 4-43 43-81 (227)
423 cd03136 GATase1_AraC_ArgR_like 25.3 93 0.002 23.0 3.3 43 67-116 61-104 (185)
424 PRK10853 putative reductase; P 25.3 1.8E+02 0.0039 20.1 4.5 35 6-45 2-37 (118)
425 cd03823 GT1_ExpE7_like This fa 25.1 1.2E+02 0.0026 24.1 4.1 39 4-43 1-43 (359)
426 PF01965 DJ-1_PfpI: DJ-1/PfpI 25.1 43 0.00094 23.9 1.4 43 67-116 34-80 (147)
427 KOG1478 3-keto sterol reductas 24.8 90 0.0019 25.4 3.1 23 1-23 1-23 (341)
428 PRK10342 glycerate kinase I; P 24.8 1.5E+02 0.0032 25.4 4.6 40 4-43 2-44 (381)
429 cd02978 KaiB_like KaiB-like fa 24.8 1.9E+02 0.0041 18.3 5.5 38 6-43 4-44 (72)
430 PRK12361 hypothetical protein; 24.7 3.3E+02 0.0071 24.3 7.1 38 2-41 242-281 (547)
431 PF13477 Glyco_trans_4_2: Glyc 24.7 1.8E+02 0.0039 19.9 4.5 35 4-43 1-35 (139)
432 PLN02516 methylenetetrahydrofo 24.6 4E+02 0.0087 22.0 7.9 109 4-118 41-178 (299)
433 PRK12419 riboflavin synthase s 24.6 2.3E+02 0.005 21.0 5.0 38 4-42 12-53 (158)
434 PF13587 DJ-1_PfpI_N: N-termin 24.5 57 0.0012 17.8 1.4 10 3-12 1-10 (38)
435 PRK07023 short chain dehydroge 24.3 78 0.0017 24.3 2.8 33 1-40 1-33 (243)
436 PLN02808 alpha-galactosidase 24.2 3.4E+02 0.0075 23.2 6.7 65 69-144 82-152 (386)
437 PF00496 SBP_bac_5: Bacterial 24.2 2.4E+02 0.0053 23.1 5.9 71 5-92 296-366 (374)
438 COG0518 GuaA GMP synthase - Gl 24.1 3.3E+02 0.0071 20.8 8.2 21 3-24 2-22 (198)
439 PF01488 Shikimate_DH: Shikima 24.1 87 0.0019 22.1 2.8 21 66-86 71-91 (135)
440 PF13344 Hydrolase_6: Haloacid 24.1 69 0.0015 21.4 2.1 41 88-141 18-58 (101)
441 cd06316 PBP1_ABC_sugar_binding 23.8 3.6E+02 0.0079 21.2 7.6 34 4-38 1-35 (294)
442 PRK06975 bifunctional uroporph 23.7 2.7E+02 0.0058 25.7 6.4 25 66-97 51-75 (656)
443 cd00950 DHDPS Dihydrodipicolin 23.7 1.5E+02 0.0033 23.7 4.5 40 69-114 94-133 (284)
444 PRK10751 molybdopterin-guanine 23.6 2E+02 0.0043 21.5 4.7 36 2-39 5-41 (173)
445 COG2222 AgaS Predicted phospho 23.6 2.1E+02 0.0046 24.0 5.3 29 4-34 88-116 (340)
446 PF01008 IF-2B: Initiation fac 23.6 1.8E+02 0.0039 23.2 4.9 16 66-81 171-187 (282)
447 PRK12686 carbamate kinase; Rev 23.5 1.4E+02 0.0031 24.7 4.2 38 1-40 1-50 (312)
448 COG1054 Predicted sulfurtransf 23.5 57 0.0012 26.8 1.8 53 65-119 121-184 (308)
449 PHA03075 glutaredoxin-like pro 23.5 1.7E+02 0.0036 20.6 3.8 27 2-29 1-28 (123)
450 PRK03731 aroL shikimate kinase 23.4 1.1E+02 0.0024 22.1 3.4 26 1-28 1-27 (171)
451 cd03137 GATase1_AraC_1 AraC tr 23.4 1.1E+02 0.0023 22.6 3.3 43 67-116 61-105 (187)
452 PRK09932 glycerate kinase II; 23.4 1.7E+02 0.0036 25.1 4.7 40 4-43 2-44 (381)
453 PTZ00445 p36-lilke protein; Pr 23.4 2.6E+02 0.0056 21.9 5.3 75 15-116 26-100 (219)
454 cd03033 ArsC_15kD Arsenate Red 23.4 2.2E+02 0.0047 19.5 4.6 35 7-45 3-37 (113)
455 PRK15408 autoinducer 2-binding 23.3 4E+02 0.0087 22.0 7.0 34 4-38 25-59 (336)
456 PRK10307 putative glycosyl tra 23.3 1.3E+02 0.0027 25.4 4.1 37 4-41 2-41 (412)
457 PRK13304 L-aspartate dehydroge 23.3 3.8E+02 0.0083 21.3 9.6 13 68-80 59-71 (265)
458 PF03807 F420_oxidored: NADP o 23.3 49 0.0011 21.4 1.3 18 65-82 56-73 (96)
459 PRK01045 ispH 4-hydroxy-3-meth 23.3 1.7E+02 0.0036 24.1 4.5 22 5-26 213-235 (298)
460 PRK13015 3-dehydroquinate dehy 23.0 1.2E+02 0.0027 22.0 3.3 78 4-97 3-93 (146)
461 PRK14098 glycogen synthase; Pr 22.9 1.5E+02 0.0033 26.0 4.6 38 1-40 5-47 (489)
462 cd01988 Na_H_Antiporter_C The 22.8 2.4E+02 0.0053 18.8 5.5 14 69-82 93-106 (132)
463 PRK06487 glycerate dehydrogena 22.7 3.6E+02 0.0079 22.1 6.5 59 19-95 159-217 (317)
464 PRK06932 glycerate dehydrogena 22.6 4.2E+02 0.0091 21.8 6.9 60 19-95 158-217 (314)
465 PLN03049 pyridoxine (pyridoxam 22.6 2.6E+02 0.0056 24.6 5.8 87 3-97 60-158 (462)
466 PRK12360 4-hydroxy-3-methylbut 22.6 1.9E+02 0.004 23.6 4.6 22 5-26 212-234 (281)
467 KOG2968 Predicted esterase of 22.5 3.4E+02 0.0074 26.3 6.7 75 104-199 834-911 (1158)
468 TIGR01616 nitro_assoc nitrogen 22.5 2.5E+02 0.0054 19.7 4.8 35 6-45 3-38 (126)
469 cd04120 Rab12 Rab12 subfamily. 22.5 3.4E+02 0.0075 20.5 6.0 46 66-115 68-113 (202)
470 PRK04147 N-acetylneuraminate l 22.5 1.6E+02 0.0035 23.8 4.4 29 69-97 98-126 (293)
471 PHA02774 E1; Provisional 22.4 2.8E+02 0.006 25.4 6.0 70 4-96 435-507 (613)
472 PRK00961 H(2)-dependent methyl 22.4 4.5E+02 0.0097 21.7 8.6 32 65-97 136-167 (342)
473 cd06318 PBP1_ABC_sugar_binding 22.4 3.7E+02 0.008 20.8 7.4 36 4-40 1-37 (282)
474 PRK09291 short chain dehydroge 22.4 1E+02 0.0022 23.8 3.1 10 70-79 73-82 (257)
475 cd06339 PBP1_YraM_LppC_lipopro 22.4 2.9E+02 0.0062 22.6 6.0 33 3-37 125-157 (336)
476 TIGR00768 rimK_fam alpha-L-glu 22.4 2.4E+02 0.0052 22.0 5.4 35 4-43 1-35 (277)
477 PF01750 HycI: Hydrogenase mat 22.2 1.2E+02 0.0027 21.0 3.2 54 18-90 2-55 (130)
478 PF03721 UDPG_MGDP_dh_N: UDP-g 22.2 3.4E+02 0.0074 20.3 6.2 59 5-79 114-174 (185)
479 PF06554 Olfactory_mark: Olfac 22.2 1.1E+02 0.0023 21.9 2.7 16 182-197 108-123 (151)
480 PRK13626 transcriptional regul 22.2 2.5E+02 0.0054 25.0 5.8 33 7-40 407-439 (552)
481 cd04117 Rab15 Rab15 subfamily. 22.1 2.9E+02 0.0064 19.5 6.2 47 66-116 68-114 (161)
482 cd06386 PBP1_NPR_C_like Ligand 22.1 4.7E+02 0.01 21.8 7.7 37 3-40 138-176 (387)
483 PF03960 ArsC: ArsC family; I 22.0 1.7E+02 0.0037 19.6 3.9 32 9-45 1-33 (110)
484 PRK00865 glutamate racemase; P 22.0 3.6E+02 0.0079 21.4 6.2 36 106-145 4-39 (261)
485 PRK11892 pyruvate dehydrogenas 21.9 3.3E+02 0.0072 23.9 6.4 68 14-95 349-417 (464)
486 PRK06223 malate dehydrogenase; 21.9 4.3E+02 0.0093 21.3 8.0 70 3-78 3-78 (307)
487 TIGR01501 MthylAspMutase methy 21.9 3.1E+02 0.0066 19.6 9.6 72 8-97 5-77 (134)
488 PRK14866 hypothetical protein; 21.8 2.3E+02 0.0049 24.9 5.2 24 4-27 2-25 (451)
489 PF04430 DUF498: Protein of un 21.8 90 0.002 21.2 2.4 26 70-95 53-78 (110)
490 COG1748 LYS9 Saccharopine dehy 21.8 1.7E+02 0.0038 25.0 4.5 29 65-95 63-91 (389)
491 PRK14189 bifunctional 5,10-met 21.7 1.1E+02 0.0025 24.9 3.3 18 65-82 196-213 (285)
492 PRK05752 uroporphyrinogen-III 21.6 4E+02 0.0087 20.9 6.7 25 66-97 51-75 (255)
493 TIGR01368 CPSaseIIsmall carbam 21.6 3.6E+02 0.0078 22.8 6.3 28 4-39 175-202 (358)
494 COG3660 Predicted nucleoside-d 21.5 2E+02 0.0043 23.5 4.4 24 4-28 2-25 (329)
495 PRK09982 universal stress prot 21.4 2.4E+02 0.0052 19.7 4.7 39 1-42 1-41 (142)
496 TIGR00465 ilvC ketol-acid redu 21.4 4.7E+02 0.01 21.6 7.4 17 65-81 54-70 (314)
497 TIGR03521 GldG gliding-associa 21.4 5.8E+02 0.012 22.9 7.9 19 66-84 230-248 (552)
498 PF14824 Sirohm_synth_M: Siroh 21.4 91 0.002 16.2 1.7 22 8-29 7-28 (30)
499 COG0796 MurI Glutamate racemas 21.3 4.5E+02 0.0098 21.3 6.6 36 106-145 4-39 (269)
500 PRK01911 ppnK inorganic polyph 21.2 1.9E+02 0.004 23.7 4.4 35 4-39 2-36 (292)
No 1
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=100.00 E-value=2.9e-37 Score=237.72 Aligned_cols=199 Identities=53% Similarity=0.891 Sum_probs=165.0
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
|| ||+|||+|++|||++||+.+++++++..|++++++++.+..+.++...+.++...+.+....+++.+||+||||||+
T Consensus 1 M~-kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsPt 79 (200)
T PRK03767 1 MA-KVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVATPDELADYDAIIFGTPT 79 (200)
T ss_pred CC-eEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCccCHHHHHhCCEEEEEecc
Confidence 66 99999999999999999999999985358999999998766665554433332222222236889999999999999
Q ss_pred cCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccC
Q 028841 81 RFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKG 160 (203)
Q Consensus 81 y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~ 160 (203)
|++++|+++|+|+|++..+|....+.+|++++|+++||..++.+.++..+...+..+||.+++.++.|... ......++
T Consensus 80 y~g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~~~~~gm~vv~~~~~~~~~-~~~~~~~~ 158 (200)
T PRK03767 80 RFGNMAGQMRNFLDQTGGLWAKGALVGKVGSVFTSTGTQHGGQETTITSTHTTLLHHGMVIVGLPYAFQGQ-MDVDEVTG 158 (200)
T ss_pred cCCCchHHHHHHHHHhccccccCCccCCEEEEEEeCCCCCCChHHHHHHHHHHHHHcCCEEeCCCCccccc-cccccccC
Confidence 99999999999999998888766799999999999999877777778889999999999999988776320 11123467
Q ss_pred CCCCccceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 028841 161 GSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKLKG 201 (203)
Q Consensus 161 ~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 201 (203)
|++||+.+..+ ++..+|+++|++.|+.+|+++++.++++++
T Consensus 159 g~~~G~~~~~~~~~~~~p~~~d~~~a~~~g~r~a~~~~~~~~ 200 (200)
T PRK03767 159 GSPYGATTIAGGDGSRQPSENELAGARYQGRHVAEIAAKLAG 200 (200)
T ss_pred CcccceeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 89999999887 788899999999999999999999999874
No 2
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=100.00 E-value=5.2e-37 Score=235.49 Aligned_cols=195 Identities=52% Similarity=0.896 Sum_probs=167.4
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFG 83 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~ 83 (203)
||+|||+|++|||++||+.|++++++..|++++++++.+..+++++.+..++..++.+....+++.+||+||||||+|++
T Consensus 2 kilIiY~S~~G~T~~lA~~ia~g~~~~~g~ev~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~GSPty~g 81 (197)
T TIGR01755 2 KVLVLYYSMYGHIETMARAVAEGAREVDGAEVVVKRVPETVPEEVAEKSHGKTDQTAPVATPQELADYDAIIFGTPTRFG 81 (197)
T ss_pred eEEEEEeCCCCHHHHHHHHHHHHHHhcCCCEEEEEeccccCcHHHHHhccCCcccCCccCCHHHHHHCCEEEEEeccccc
Confidence 89999999999999999999999986238999999998887777776555544444555446789999999999999999
Q ss_pred ccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccCCCC
Q 028841 84 MMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSP 163 (203)
Q Consensus 84 ~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~~~ 163 (203)
+++++||+|+|++..+|....+.||++++|+++||..++.+.++..+...+.++||.+++.++.|+- .......+++++
T Consensus 82 ~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~l~~~Gm~vv~~~~~~~~-~~~~~~~~gg~~ 160 (197)
T TIGR01755 82 NMASQMRNFLDQTGGLWASGALVGKVGSVFTSTGTQHGGQESTILSTWTTLLHHGMIIVPLPYAAQE-QMGVDEVRGGSP 160 (197)
T ss_pred CccHHHHHHHHhccccccccccCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEeCCCccccc-ccccccccCCCC
Confidence 9999999999999888876679999999999999987888777888999999999999999877631 222334588999
Q ss_pred CccceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 028841 164 YGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKL 199 (203)
Q Consensus 164 ~g~~~~~~-~~~~~~~~~~~~~~~~~g~~l~~~~~~~ 199 (203)
||+++..+ ++..+|++.|++.|+.+|+++++.++++
T Consensus 161 ~G~~~~~~~~~~~~p~~~d~~~a~~~g~r~a~~a~~l 197 (197)
T TIGR01755 161 YGATTIAGGDGSRQPSAEELDIARYQGRHVAGLAAKL 197 (197)
T ss_pred cceeeEcCCCCCCCcCHHHHHHHHHHHHHHHHHHHhC
Confidence 99999887 7888999999999999999999999875
No 3
>KOG3135 consensus 1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein [General function prediction only]
Probab=100.00 E-value=8.5e-35 Score=208.81 Aligned_cols=199 Identities=74% Similarity=1.147 Sum_probs=185.6
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCC-CCCCCChhhhhhcCeeEEeccc
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKS-DVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~-d~~~~~~~~l~~aD~iiigsP~ 80 (203)
|.||.||++|.+|+-.++|++++++++.+.| +.+++.+.+..+++++++.+.++++ |+|.++.+.|.+||+.+||.|+
T Consensus 1 ~~kv~iv~ys~yghv~~lAe~~kkGie~a~g-eA~i~qVpEtl~~evl~km~a~pkp~d~piit~~~L~e~D~flFG~PT 79 (203)
T KOG3135|consen 1 MPKVAIVIYSTYGHVAKLAEAEKKGIESAGG-EATIYQVPETLSEEVLEKMKAPPKPSDYPIITPETLTEYDGFLFGFPT 79 (203)
T ss_pred CceEEEEEEEcccHHHHHHHHHHhhhhccCC-eeEEEEcccccCHHHHHHhcCCCCCccCCccCHHHHhhccceeecccc
Confidence 5799999999999999999999999998544 9999999999889999988888875 8899889999999999999999
Q ss_pred cCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCc-CCCCcccccccc
Q 028841 81 RFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYT-FGAGMFEMEKVK 159 (203)
Q Consensus 81 y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~-~~~~~~~~~~~~ 159 (203)
-+|++|+++|.|+|....+|..+.|.||++++|.+.|..+|+++.+.......|.++||.+|+.+|. .+-.+.++++++
T Consensus 80 RfG~~~AQ~kaF~D~TggLW~~~aL~GK~AG~F~Stgs~gGgqE~talta~t~LvHHGmifVPlGYkn~~a~m~~me~V~ 159 (203)
T KOG3135|consen 80 RFGNMPAQWKAFWDSTGGLWAKGALAGKPAGIFVSTGSQGGGQETTALTAITQLVHHGMIFVPLGYKNFGAEMFEMEEVH 159 (203)
T ss_pred cccCcHHHHHHHHhccCchhhhccccCCceeEEEeccCCCCchHhHHHHHHHHHHhcceEEEecccchhhhhhhhhhccc
Confidence 9999999999999999999999999999999999999888999988888888999999999999998 455778888999
Q ss_pred CCCCCccceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 028841 160 GGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKLKG 201 (203)
Q Consensus 160 ~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 201 (203)
|+++||++.++| ||.+.|++-+++.++..|+-+++.++++..
T Consensus 160 Ggsp~GAGt~Ag~DGsR~ps~lEL~~a~~qGk~f~~~~kkl~~ 202 (203)
T KOG3135|consen 160 GGSPWGAGTFAGIDGSREPSELELQQAEIQGKYFAEIVKKLKG 202 (203)
T ss_pred CCCCCCCceeecCCCCCCCCHHHHHHHHHhhHHHHHHHHHhcC
Confidence 999999999999 999999999999999999999999999875
No 4
>PRK05569 flavodoxin; Provisional
Probab=99.95 E-value=1.5e-26 Score=168.80 Aligned_cols=138 Identities=28% Similarity=0.342 Sum_probs=114.4
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecccc
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR 81 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y 81 (203)
|+|++|+|+|++|||++||+.|++++.+ .|.+++++++.+.+ ..++.+||+||||||+|
T Consensus 1 m~ki~iiY~S~tGnT~~iA~~i~~~~~~-~g~~v~~~~~~~~~--------------------~~~~~~~d~iilgsPty 59 (141)
T PRK05569 1 MKKVSIIYWSCGGNVEVLANTIADGAKE-AGAEVTIKHVADAK--------------------VEDVLEADAVAFGSPSM 59 (141)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHh-CCCeEEEEECCcCC--------------------HHHHhhCCEEEEECCCc
Confidence 4599999999999999999999999988 68899999887653 34788999999999999
Q ss_pred CCcc--HHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCcccccccc
Q 028841 82 FGMM--AAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVK 159 (203)
Q Consensus 82 ~~~~--~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~ 159 (203)
++++ |+.++.|+|++... .++||++++|+|+||..+.. +..+.+.+...|+.+++. +. ++
T Consensus 60 ~~~~~~~~~~~~~~~~l~~~----~~~~K~v~~f~t~g~~~~~~---~~~~~~~l~~~g~~~~~~-~~----------~~ 121 (141)
T PRK05569 60 DNNNIEQEEMAPFLDQFKLT----PNENKKCILFGSYGWDNGEF---MKLWKDRMKDYGFNVIGD-LA----------VN 121 (141)
T ss_pred CCCcCChHHHHHHHHHhhcc----CcCCCEEEEEeCCCCCCCcH---HHHHHHHHHHCCCeEeee-EE----------Ec
Confidence 9875 47899999998532 46899999999999875432 345677788889998774 21 22
Q ss_pred CCCCCccceecCCCCCCCCHHHHHHHHHHHHHHH
Q 028841 160 GGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIA 193 (203)
Q Consensus 160 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~ 193 (203)
..|+++++++|++||++|+
T Consensus 122 ---------------~~p~~~~~~~~~~~g~~l~ 140 (141)
T PRK05569 122 ---------------ESPNKEELNSAKELGKKLA 140 (141)
T ss_pred ---------------cCCCHHHHHHHHHHHHHHh
Confidence 3899999999999999986
No 5
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=99.95 E-value=3.4e-26 Score=177.02 Aligned_cols=195 Identities=38% Similarity=0.530 Sum_probs=147.6
Q ss_pred eEEEEEcCC--cchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHH--hccCC----CCCCCCCCCCChhhhhhcCeeE
Q 028841 4 KVYIVYYSM--YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEV--LGKMS----APPKSDVPIITPNELAEADGFV 75 (203)
Q Consensus 4 kilii~~S~--~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~--~~~~~----~~~~~d~~~~~~~~l~~aD~ii 75 (203)
|++.|++|+ +|||+++++++++++++ .|+|++++++.+.++..| |..|. |..++|..+...+++.+||+||
T Consensus 2 ki~~I~gs~r~~G~t~~l~~~~~~g~~~-~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI 80 (207)
T COG0655 2 KILGINGSPRSNGNTAKLAEAVLEGAEE-AGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGII 80 (207)
T ss_pred eeeEEEecCCCCCcHHHHHHHHHHHHHH-cCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEE
Confidence 788888775 59999999999999999 699999999999854333 33221 3334443333478899999999
Q ss_pred EeccccCCccHHHHHHHHHH-hcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccc
Q 028841 76 FGFPTRFGMMAAQFKAFLDA-TGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFE 154 (203)
Q Consensus 76 igsP~y~~~~~~~~k~~ld~-~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~ 154 (203)
||||+|+|++|++||.|||| ....|....+++|+.+.|++.+..+++.+.++..+...+.+++|.+++.++.....-..
T Consensus 81 ~gsPvy~g~vsa~~K~fiDR~~~~~~~~~~l~~k~~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~ 160 (207)
T COG0655 81 FGSPVYFGNVSAQMKAFIDRSTGPLWAPGALRGKVGAAFVSGGSRGGGQEATLLSLLLFFLHHGMIVVGLGYGNAVVGSG 160 (207)
T ss_pred EeCCeecCCchHHHHHHHhhcchhhcccchhccccceEEEEeccCCCChHHHHHHHHHHHHHcCCeEecccccccccCcc
Confidence 99999999999999999999 55566666899999999999988777777678889999999999999988763210000
Q ss_pred cccccCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 028841 155 MEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKKL 199 (203)
Q Consensus 155 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~ 199 (203)
.....++.++|....+.....++.+.+++.++.+++..++...++
T Consensus 161 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (207)
T COG0655 161 VDLIKGGDPYGAVTQDEEDLSRPSALGLKMARLLGKIVAENAAKL 205 (207)
T ss_pred cccccCCCCcccceeccccccccchHHHHHHHHHHHHHHHHHHhh
Confidence 112456677777666663333467777888888888887766654
No 6
>PRK06756 flavodoxin; Provisional
Probab=99.95 E-value=3.4e-26 Score=168.24 Aligned_cols=146 Identities=24% Similarity=0.333 Sum_probs=120.7
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
|| |++|||+|++|||+++|+.|++++++ .|++++++++.+.+. ...+.++|.||||+|+
T Consensus 1 mm-kv~IiY~S~tGnTe~vA~~ia~~l~~-~g~~v~~~~~~~~~~-------------------~~~~~~~d~vi~gspt 59 (148)
T PRK06756 1 MS-KLVMIFASMSGNTEEMADHIAGVIRE-TENEIEVIDIMDSPE-------------------ASILEQYDGIILGAYT 59 (148)
T ss_pred Cc-eEEEEEECCCchHHHHHHHHHHHHhh-cCCeEEEeehhccCC-------------------HHHHhcCCeEEEEeCC
Confidence 66 99999999999999999999999988 799999998865421 2468899999999999
Q ss_pred cC-CccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCcccccccc
Q 028841 81 RF-GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVK 159 (203)
Q Consensus 81 y~-~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~ 159 (203)
|+ +.+|..++.|++.+... .++||++++|+++++..+....++..+.+.|...|+.+++.++. ++
T Consensus 60 ~~~g~~p~~~~~fl~~l~~~----~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~~~~~----------~~ 125 (148)
T PRK06756 60 WGDGDLPDDFLDFYDAMDSI----DLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVLEGLK----------VE 125 (148)
T ss_pred CCCCCCcHHHHHHHHHHhcC----CCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcCCCeE----------Ee
Confidence 96 88888999999998532 57999999999976543323344677888999999999987643 23
Q ss_pred CCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 028841 160 GGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIA 196 (203)
Q Consensus 160 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~ 196 (203)
..|+++|++++++||++|++.+
T Consensus 126 ---------------~~p~~~d~~~~~~~~~~~~~~~ 147 (148)
T PRK06756 126 ---------------LTPEDEDVEKCLQFGAEFVKHL 147 (148)
T ss_pred ---------------cCCCHHHHHHHHHHHHHHHHhc
Confidence 4899999999999999998754
No 7
>PRK05568 flavodoxin; Provisional
Probab=99.94 E-value=9.1e-26 Score=164.77 Aligned_cols=139 Identities=25% Similarity=0.356 Sum_probs=115.9
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecccc
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR 81 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y 81 (203)
|+|++|+|+|++|||+++|+.|++++++ .|++++++++.+.+ ..++.++|.||||||+|
T Consensus 1 m~~~~IvY~S~~GnT~~~a~~i~~~~~~-~g~~v~~~~~~~~~--------------------~~~~~~~d~iilgsp~y 59 (142)
T PRK05568 1 MKKINIIYWSGTGNTEAMANLIAEGAKE-NGAEVKLLNVSEAS--------------------VDDVKGADVVALGSPAM 59 (142)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHH-CCCeEEEEECCCCC--------------------HHHHHhCCEEEEECCcc
Confidence 4589999999999999999999999988 78999999988753 34789999999999999
Q ss_pred CCccH--HHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCcccccccc
Q 028841 82 FGMMA--AQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVK 159 (203)
Q Consensus 82 ~~~~~--~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~ 159 (203)
++.++ +.++.|++++.. .+++|++++|+|+||..+.. ...+.+.+...|+.+++.++. ++
T Consensus 60 ~~~~~~~~~~~~f~~~~~~-----~~~~k~~~~f~t~G~~~~~~---~~~~~~~l~~~g~~~~~~~~~----------~~ 121 (142)
T PRK05568 60 GDEVLEEGEMEPFVESISS-----LVKGKKLVLFGSYGWGDGEW---MRDWVERMEGYGANLVNEGLI----------VN 121 (142)
T ss_pred CcccccchhHHHHHHHhhh-----hhCCCEEEEEEccCCCCChH---HHHHHHHHHHCCCEEeCCcEE----------Ee
Confidence 98874 689999999742 36899999999998864332 344667788899999887542 22
Q ss_pred CCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 028841 160 GGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAG 194 (203)
Q Consensus 160 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~ 194 (203)
..|+++++++|+++|++|++
T Consensus 122 ---------------~~p~~~~l~~~~~~g~~l~~ 141 (142)
T PRK05568 122 ---------------NTPEGEGIEKCKALGEALAK 141 (142)
T ss_pred ---------------cCCCHHHHHHHHHHHHHHHh
Confidence 37999999999999999874
No 8
>PRK06703 flavodoxin; Provisional
Probab=99.93 E-value=1.1e-24 Score=160.80 Aligned_cols=148 Identities=24% Similarity=0.258 Sum_probs=121.6
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
|| |++|+|+|.+|||+++|+.|++.+.+ .|+++++.++.+.+ ...+.++|.|||+||+
T Consensus 1 mm-kv~IiY~S~tGnT~~iA~~ia~~l~~-~g~~v~~~~~~~~~--------------------~~~l~~~d~viigspt 58 (151)
T PRK06703 1 MA-KILIAYASMSGNTEDIADLIKVSLDA-FDHEVVLQEMDGMD--------------------AEELLAYDGIILGSYT 58 (151)
T ss_pred CC-eEEEEEECCCchHHHHHHHHHHHHHh-cCCceEEEehhhCC--------------------HHHHhcCCcEEEEECC
Confidence 66 99999999999999999999999988 78899999887643 2468899999999999
Q ss_pred cC-CccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCcccccccc
Q 028841 81 RF-GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVK 159 (203)
Q Consensus 81 y~-~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~ 159 (203)
|+ +.+|..++.|++++... .+++|++++|+++++..+........+.+.|...|+.+++..+.+ +
T Consensus 59 ~~~g~~p~~~~~f~~~l~~~----~l~~k~~~vfg~g~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~----------~ 124 (151)
T PRK06703 59 WGDGDLPYEAEDFHEDLENI----DLSGKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAELVQEGLKI----------E 124 (151)
T ss_pred CCCCcCcHHHHHHHHHHhcC----CCCCCEEEEEccCCCChHHHHHHHHHHHHHHHHCCCEEcccCeEE----------e
Confidence 95 88888999999988532 578999999999887543223345668888999999998876532 2
Q ss_pred CCCCCccceecCCCCCCCC-HHHHHHHHHHHHHHHHHHHHh
Q 028841 160 GGSPYGAGTFAGDGSRQPT-ELELEQAFHQGKHIAGIAKKL 199 (203)
Q Consensus 160 ~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~ 199 (203)
..|+ ++++++|++++++|++.+++.
T Consensus 125 ---------------~~p~~~~~~~~~~~~~~~~~~~~~~~ 150 (151)
T PRK06703 125 ---------------LAPETDEDVEKCSNFAIAFAEKFAQM 150 (151)
T ss_pred ---------------cCCCchhHHHHHHHHHHHHHHHHHhc
Confidence 3675 799999999999999888764
No 9
>PRK06242 flavodoxin; Provisional
Probab=99.92 E-value=1.2e-24 Score=160.19 Aligned_cols=146 Identities=24% Similarity=0.278 Sum_probs=112.0
Q ss_pred eEEEEEcCC-cchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccC
Q 028841 4 KVYIVYYSM-YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRF 82 (203)
Q Consensus 4 kilii~~S~-~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~ 82 (203)
|++|+|+|+ +|||+++|+.|++.+. ++++++.+.. .+++.++|.||||+|+|+
T Consensus 2 k~~IiY~S~~tGnT~~~A~~ia~~l~------~~~~~i~~~~--------------------~~~~~~~d~ii~g~pvy~ 55 (150)
T PRK06242 2 KALIVYASVHHGNTEKIAKAIAEVLD------AEVIDPGDVN--------------------PEDLSEYDLIGFGSGIYF 55 (150)
T ss_pred cEEEEEeCCCCCCHHHHHHHHHHhcC------cEEecHHHCC--------------------cccHhHCCEEEEeCchhc
Confidence 899999998 7999999999999883 3455654321 246889999999999999
Q ss_pred CccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccCCC
Q 028841 83 GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGS 162 (203)
Q Consensus 83 ~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~~ 162 (203)
+.+|+.++.|+|++. .+.+|++++|+|+|+.+++. ...+.+.+...|+.+++.....|. .
T Consensus 56 ~~~~~~~~~fl~~~~------~~~~k~~~~f~t~g~~~~~~---~~~l~~~l~~~g~~~~~~~~~~g~-----------~ 115 (150)
T PRK06242 56 GKFHKSLLKLIEKLP------PVSGKKAFIFSTSGLPFLKY---HKALKKKLKEKGFEIVGEFSCKGF-----------D 115 (150)
T ss_pred CCcCHHHHHHHHhhh------hhcCCeEEEEECCCCCcchH---HHHHHHHHHHCCCEEEEEEecCCc-----------c
Confidence 999999999999984 35899999999999876543 345778888899999986433222 1
Q ss_pred CCccceecC-CCCCCCCHHHHHHHHHHHHHHHHH
Q 028841 163 PYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGI 195 (203)
Q Consensus 163 ~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~l~~~ 195 (203)
.++.....+ ....+|+++|++.|+++|++|++.
T Consensus 116 ~~~~~~~~~~~~~~~p~~~d~~~~~~~gk~l~~~ 149 (150)
T PRK06242 116 TFGPFKLIGGINKGHPNEKDLENAKEFAENLKKK 149 (150)
T ss_pred cccchhhcCCccCCCcCHHHHHHHHHHHHHHhhc
Confidence 122211112 334689999999999999999754
No 10
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=99.92 E-value=7.7e-24 Score=153.95 Aligned_cols=138 Identities=25% Similarity=0.353 Sum_probs=114.0
Q ss_pred EEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCC-
Q 028841 5 VYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFG- 83 (203)
Q Consensus 5 ilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~- 83 (203)
|+|+|+|++|||+++|+.|++++.+ .|++++++++.+.+ ..++.++|.||||+|+|++
T Consensus 1 v~Iiy~S~tGnT~~~A~~i~~~~~~-~g~~v~~~~~~~~~--------------------~~~l~~~d~iilgspty~~g 59 (140)
T TIGR01753 1 ILIVYASMTGNTEEMANIIAEGLKE-AGAEVDLLEVADAD--------------------AEDLLSYDAVLLGCSTWGDE 59 (140)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHh-cCCeEEEEEcccCC--------------------HHHHhcCCEEEEEcCCCCCC
Confidence 5899999999999999999999988 79999999987653 3467889999999999985
Q ss_pred ccH-HHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccCCC
Q 028841 84 MMA-AQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGS 162 (203)
Q Consensus 84 ~~~-~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~~ 162 (203)
.+| +.++.|++++... .++||++++|+++|+... ...+...+.+.|...|+.+++.++. +.
T Consensus 60 ~~p~~~~~~f~~~l~~~----~~~gk~~~vfgt~g~~~~-f~~~~~~~~~~l~~~g~~~v~~~~~----------~~--- 121 (140)
T TIGR01753 60 DLEQDDFEPFFEELEDI----DLGGKKVALFGSGDWGYE-FCEAVDDWEERLKEAGATIIAEGLK----------VD--- 121 (140)
T ss_pred CCCcchHHHHHHHhhhC----CCCCCEEEEEecCCCCch-hhHHHHHHHHHHHHCCCEEecCCee----------ee---
Confidence 476 8999999998532 478999999999987653 3334566888888899999886532 12
Q ss_pred CCccceecCCCCCCCCHHHHHHHHHHHHHHH
Q 028841 163 PYGAGTFAGDGSRQPTELELEQAFHQGKHIA 193 (203)
Q Consensus 163 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~ 193 (203)
..|++++++++++++++|+
T Consensus 122 ------------~~p~~~~~~~~~~~~~~l~ 140 (140)
T TIGR01753 122 ------------GDPEEEDLDKCREFAKDLA 140 (140)
T ss_pred ------------cCCCHHHHHHHHHHHHHhC
Confidence 3899999999999999874
No 11
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.91 E-value=9.2e-24 Score=178.06 Aligned_cols=145 Identities=22% Similarity=0.311 Sum_probs=121.5
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcc--cCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecc
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGAS--SVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFP 79 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~--~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP 79 (203)
++|++|||+|++|||++||+.|+++++ . .|++++++++.+.++.++ ..++.+||+||||||
T Consensus 247 ~~kv~IvY~S~~GnTe~mA~~ia~g~~~~~-~g~~v~~~~~~~~~~~~i----------------~~~~~~~d~ii~Gsp 309 (394)
T PRK11921 247 ENQVTILYDTMWNSTRRMAEAIAEGIKKAN-KDVTVKLYNSAKSDKNDI----------------ITEVFKSKAILVGSS 309 (394)
T ss_pred cCcEEEEEECCchHHHHHHHHHHHHHhhcC-CCCeEEEEECCCCCHHHH----------------HHHHHhCCEEEEECC
Confidence 368999999999999999999999998 5 689999999988754433 235678999999999
Q ss_pred ccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCcccccccc
Q 028841 80 TRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVK 159 (203)
Q Consensus 80 ~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~ 159 (203)
+|++++.+.++.|++.+... .++||++++|+++||.++. +..+.+.|...|+.+++.++. ++
T Consensus 310 T~~~~~~~~~~~~l~~l~~~----~~~~K~~a~FGsygw~g~a----~~~~~~~l~~~g~~~v~~~~~----------~~ 371 (394)
T PRK11921 310 TINRGILSSTAAILEEIKGL----GFKNKKAAAFGSYGWSGES----VKIITERLKKAGFEIVNDGIR----------EL 371 (394)
T ss_pred CcCccccHHHHHHHHHhhcc----CcCCCEEEEEecCCCccHH----HHHHHHHHHHCCCEEccCcEE----------EE
Confidence 99988878899999998643 5899999999999996543 345778888999999986643 23
Q ss_pred CCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 028841 160 GGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIA 196 (203)
Q Consensus 160 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~ 196 (203)
..|+++++++|+++|++|++.+
T Consensus 372 ---------------~~p~~~~~~~~~~~g~~la~~~ 393 (394)
T PRK11921 372 ---------------WNPDDEALDRCRSFGENFAESL 393 (394)
T ss_pred ---------------eCCCHHHHHHHHHHHHHHHHhh
Confidence 3789999999999999998754
No 12
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=99.91 E-value=1.8e-24 Score=159.57 Aligned_cols=138 Identities=28% Similarity=0.389 Sum_probs=109.7
Q ss_pred eEEEEEcCC--cchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhcc---CCCCCCCCCCCCChhhhhhcCeeEEec
Q 028841 4 KVYIVYYSM--YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGK---MSAPPKSDVPIITPNELAEADGFVFGF 78 (203)
Q Consensus 4 kilii~~S~--~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~---~~~~~~~d~~~~~~~~l~~aD~iiigs 78 (203)
||++|++|+ +|||+++++.+++.+++ .|++++++++.+...+ ++.+ +.|...+++.+ ..+++.+||+|||+|
T Consensus 2 kilii~gS~r~~~~t~~l~~~~~~~l~~-~g~e~~~i~l~~~~~p-~~~~~~~~~~~~~d~~~~-~~~~l~~aD~iI~~s 78 (152)
T PF03358_consen 2 KILIINGSPRKNSNTRKLAEAVAEQLEE-AGAEVEVIDLADYPLP-CCDGDFECPCYIPDDVQE-LYDKLKEADGIIFAS 78 (152)
T ss_dssp EEEEEESSSSTTSHHHHHHHHHHHHHHH-TTEEEEEEECTTSHCH-HHHHHHHHTGCTSHHHHH-HHHHHHHSSEEEEEE
T ss_pred EEEEEECcCCCCCHHHHHHHHHHHHHHH-cCCEEEEEeccccchh-hcccccccccCCcHHHHH-HHhceecCCeEEEee
Confidence 999999996 49999999999999998 6999999999998333 3332 12333444322 368999999999999
Q ss_pred cccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCC
Q 028841 79 PTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGY 146 (203)
Q Consensus 79 P~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~ 146 (203)
|+|++++|+.+|+||||+.. +....+.+|++++++++|+..++.. +...+...+...||.+++..+
T Consensus 79 P~y~~~~s~~lK~~lD~~~~-~~~~~~~~K~~~~i~~~g~~~g~~~-~~~~l~~~~~~~~~~~~~~~~ 144 (152)
T PF03358_consen 79 PVYNGSVSGQLKNFLDRLSC-WFRRALRGKPVAIIAVGGGRRGGLR-ALEQLRQILDYLGMIVVPSGV 144 (152)
T ss_dssp EEBTTBE-HHHHHHHHTHHH-THTTTTTTSEEEEEEEESSSSTTHH-HHHHHHHHHHHTTBEEECCSE
T ss_pred cEEcCcCChhhhHHHHHhcc-ccccccCCCEEEEEEEecCCcHHHH-HHHHHHHHHHHCCCEEcCCcE
Confidence 99999999999999999963 2335789999999988877555544 467788888899999998753
No 13
>PRK07308 flavodoxin; Validated
Probab=99.91 E-value=5.5e-23 Score=150.80 Aligned_cols=144 Identities=19% Similarity=0.152 Sum_probs=115.8
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
|+ |+.|+|+|++|||+++|+.|++.+.+ .|+++++.++.+.+ ...+.++|.|||++|+
T Consensus 1 m~-~~~IvY~S~tGnTe~iA~~ia~~l~~-~g~~~~~~~~~~~~--------------------~~~l~~~d~vi~g~~t 58 (146)
T PRK07308 1 MA-LAKIVYASMTGNTEEIADIVADKLRE-LGHDVDVDECTTVD--------------------ASDFEDADIAIVATYT 58 (146)
T ss_pred Cc-eEEEEEECCCchHHHHHHHHHHHHHh-CCCceEEEecccCC--------------------HhHhccCCEEEEEeCc
Confidence 54 99999999999999999999999988 78889988887653 2467899999999999
Q ss_pred cC-CccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCcccccccc
Q 028841 81 RF-GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVK 159 (203)
Q Consensus 81 y~-~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~ 159 (203)
|. |.+|..++.|++++... .++||++++|++++...+........+.+.|...|+.++...+. ++
T Consensus 59 ~g~G~~p~~~~~fl~~l~~~----~l~~k~~~vfG~Gd~~y~~~~~a~~~~~~~l~~~g~~~~~~~~~----------~~ 124 (146)
T PRK07308 59 YGDGELPDEIVDFYEDLADL----DLSGKIYGVVGSGDTFYDYFCKSVDDFEAQFALTGATKGAESVK----------VD 124 (146)
T ss_pred cCCCCCCHHHHHHHHHHhcC----CCCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCeEccCcEE----------Ee
Confidence 97 88999999999998643 57899999999954332222233555777888889998775532 22
Q ss_pred CCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 028841 160 GGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGI 195 (203)
Q Consensus 160 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 195 (203)
..|+++++++|+++|++|++.
T Consensus 125 ---------------~~p~~~~~~~~~~~~~~l~~~ 145 (146)
T PRK07308 125 ---------------LAAEDEDIERLEAFAEELAAK 145 (146)
T ss_pred ---------------CCCCHHHHHHHHHHHHHHHhh
Confidence 378999999999999999754
No 14
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.90 E-value=1e-22 Score=174.99 Aligned_cols=146 Identities=25% Similarity=0.369 Sum_probs=120.6
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccC-CCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSV-EGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~-~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
++|++|+|+|++|||++||+.|++++++. .|++++++++.+.++.++. .++.+||+||||||+
T Consensus 251 ~~kv~IvY~S~~GnTe~mA~~ia~gl~~~g~gv~v~~~~v~~~~~~~i~----------------~~~~~ad~vilGspT 314 (479)
T PRK05452 251 EDRITIFYDTMSNNTRMMADAIAQGIAEVDPRVAVKIFNVARSDKNEIL----------------TNVFRSKGVLVGSST 314 (479)
T ss_pred cCcEEEEEECCccHHHHHHHHHHHHHHhhCCCceEEEEECCCCCHHHHH----------------hHHhhCCEEEEECCc
Confidence 36899999999999999999999999862 2678999999877654322 345689999999999
Q ss_pred cCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccC
Q 028841 81 RFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKG 160 (203)
Q Consensus 81 y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~ 160 (203)
|++.+.++|+.|++.+... .++||++++|+|+||.+++ +..+.+.|...|+.++. ++. ++
T Consensus 315 ~~~~~~p~~~~fl~~l~~~----~l~gK~~~vFGSygw~g~a----~~~~~~~l~~~g~~~~~-~l~----------~~- 374 (479)
T PRK05452 315 MNNVMMPKIAGLLEEITGL----RFRNKRASAFGSHGWSGGA----VDRLSTRLQDAGFEMSL-SLK----------AK- 374 (479)
T ss_pred cCCcchHHHHHHHHHhhcc----CcCCCEEEEEECCCcCcHH----HHHHHHHHHHCCCEEec-cEE----------EE-
Confidence 9999999999999998643 5899999999999997654 34477888889999964 322 23
Q ss_pred CCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028841 161 GSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAK 197 (203)
Q Consensus 161 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~ 197 (203)
..|+++++++|++||++|++.++
T Consensus 375 --------------~~P~ee~~~~~~~~g~~la~~~~ 397 (479)
T PRK05452 375 --------------WRPDQDALELCREHGREIARQWA 397 (479)
T ss_pred --------------ecCCHHHHHHHHHHHHHHHHHHh
Confidence 48999999999999999998765
No 15
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=99.90 E-value=1.1e-22 Score=155.04 Aligned_cols=170 Identities=16% Similarity=0.087 Sum_probs=124.3
Q ss_pred eEEEEEcCC--cchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecccc
Q 028841 4 KVYIVYYSM--YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR 81 (203)
Q Consensus 4 kilii~~S~--~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y 81 (203)
||++|++|+ .++|.++++.+.+.+.+ .|.+++++|+.++++.++..++.. .++. ....+++.+||+|||+||+|
T Consensus 2 kIl~I~GSpr~~S~t~~l~~~~~~~l~~-~g~ev~~idL~~l~~~~~~~~~~~--~~~~-~~~~~~i~~AD~iIi~tP~Y 77 (191)
T PRK10569 2 RVITLAGSPRFPSRSSALLEYAREWLNG-LGVEVYHWNLQNFAPEDLLYARFD--SPAL-KTFTEQLAQADGLIVATPVY 77 (191)
T ss_pred EEEEEEcCCCCCChHHHHHHHHHHHHHh-CCCEEEEEEccCCChHHHHhccCC--CHHH-HHHHHHHHHCCEEEEECCcc
Confidence 899999996 58999999999999998 799999999998877655432211 1121 11368999999999999999
Q ss_pred CCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHH-HHHHHHHHHcCcEEecCCCcCCCCccccccccC
Q 028841 82 FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTA-LTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKG 160 (203)
Q Consensus 82 ~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~-~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~ 160 (203)
|+++|+.+|+|||++.. ..+.||++++++++|.. ++.. .+ ..|+..+...|+.+++.+......
T Consensus 78 ~~s~pg~LKn~iD~l~~----~~l~~K~v~iiat~G~~-~~~~-~~~~~lr~~l~~l~a~~~~~~~~~~~~--------- 142 (191)
T PRK10569 78 KASFSGALKTLLDLLPE----RALEHKVVLPLATGGSV-AHML-AVDYALKPVLSALKAQEILHGVFADDS--------- 142 (191)
T ss_pred CCCCCHHHHHHHHhCCh----hhhCCCEEEEEEecCCc-hhHH-HHHHHHHHHHHHcCCeecCceEEEech---------
Confidence 99999999999999842 36899999999997554 3332 24 345566777899887765432100
Q ss_pred CCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028841 161 GSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKK 198 (203)
Q Consensus 161 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~ 198 (203)
... .|..++ ..+++..++++++.+++++.+..
T Consensus 143 --~~~--~~d~~~--~~d~~~~~rl~~~~~~~~~~~~~ 174 (191)
T PRK10569 143 --QVI--DYHHQP--QFTPNLQTRLDEALETFWQALHR 174 (191)
T ss_pred --hhh--cccccc--ccCHHHHHHHHHHHHHHHHHHcc
Confidence 000 011122 44899999999999999887643
No 16
>PRK09267 flavodoxin FldA; Validated
Probab=99.88 E-value=3.5e-21 Score=144.53 Aligned_cols=163 Identities=21% Similarity=0.201 Sum_probs=115.4
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
|| |++|+|+|.+|||+++|+.|++.+.. .+++++++.+.. ..++.++|.||||+|+
T Consensus 1 mm-ki~IiY~S~tGnT~~vA~~Ia~~l~~---~~~~~~~~~~~~--------------------~~~l~~~d~vi~g~pt 56 (169)
T PRK09267 1 MA-KIGIFFGSDTGNTEDIAKMIQKKLGK---DVADVVDIAKAS--------------------KEDFEAYDLLILGIPT 56 (169)
T ss_pred CC-eEEEEEECCCChHHHHHHHHHHHhCC---CceEEEEhhhCC--------------------HhhHhhCCEEEEEecC
Confidence 66 99999999999999999999999964 267888876542 2468899999999999
Q ss_pred cC-CccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCC--hHHHHHHHHHHHHHcCcEEecCCCcCCCCcccccc
Q 028841 81 RF-GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGG--QETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEK 157 (203)
Q Consensus 81 y~-~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~--~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~ 157 (203)
|+ |.+|+.++.|++.+... .++||++++|++++..+.. ....+..+.+.|...|+.++|...+.|+.-.+...
T Consensus 57 ~~~G~~~~~~~~fl~~~~~~----~l~~k~vaifg~g~~~~~~~~~~~~~~~l~~~l~~~g~~~vg~~~~~gy~~~~~~~ 132 (169)
T PRK09267 57 WGYGELQCDWDDFLPELEEI----DFSGKKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRGATIVGHWPTDGYTFEASKA 132 (169)
T ss_pred cCCCCCCHHHHHHHHHHhcC----CCCCCEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCCEEECccCCCCccccccce
Confidence 96 88999999999987432 5789999999987543221 12345667788888999999985444543222122
Q ss_pred ccCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 028841 158 VKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGI 195 (203)
Q Consensus 158 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 195 (203)
++++..+|.. . +....++..| ++++++++.|...
T Consensus 133 ~~~~~~~g~~-~--d~~~~~~~td-~~i~~w~~~i~~~ 166 (169)
T PRK09267 133 VDDGKFVGLA-L--DEDNQSELTD-ERIEAWVKQIKPE 166 (169)
T ss_pred eeCCEEEEEE-e--cCCCchhhhH-HHHHHHHHHHHHH
Confidence 3333333332 1 3332344445 7888888877643
No 17
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=99.88 E-value=6.2e-22 Score=149.30 Aligned_cols=168 Identities=19% Similarity=0.163 Sum_probs=117.5
Q ss_pred eEEEEEcCC--cchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCC--CCCCCCCCChhhhhhcCeeEEecc
Q 028841 4 KVYIVYYSM--YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAP--PKSDVPIITPNELAEADGFVFGFP 79 (203)
Q Consensus 4 kilii~~S~--~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~--~~~d~~~~~~~~l~~aD~iiigsP 79 (203)
||++|++|+ +|+|.++++.+.+.+.+..|.+++++|+.+.+++ +..+.+. ..++. ....+++.+||+|||+||
T Consensus 1 kIl~i~GS~r~~s~t~~l~~~~~~~l~~~~g~ev~~idL~~~~~~--~~~~~~~~~~~~~~-~~~~~~i~~AD~iIi~tP 77 (174)
T TIGR03566 1 KVVGVSGSLTRPSRTLALVEALVAELAARLGISPRTIDLADLAPS--LGGALWRSQLPPDA-ERILQAIESADLLVVGSP 77 (174)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEEEEEhhhcChh--hccccccCCCCHHH-HHHHHHHHHCCEEEEECC
Confidence 799999996 5899999999999875325889999999886442 2211111 11111 123678999999999999
Q ss_pred ccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCcccccccc
Q 028841 80 TRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVK 159 (203)
Q Consensus 80 ~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~ 159 (203)
+||+++|+.+|+|||++.+ ..+.||++++++++|+..++. .....+...+...|+.+++..+.. .
T Consensus 78 ~Y~~s~~~~LKn~lD~~~~----~~l~~K~~~~v~~~g~~~~~~-~~~~~l~~~~~~l~~~~~~~~~~~----------~ 142 (174)
T TIGR03566 78 VYRGSYTGLFKHLFDLVDP----NALIGKPVLLAATGGSERHAL-MVEHQLRPLFGFFQALTLPTGVYA----------S 142 (174)
T ss_pred cCcCcCcHHHHHHHHhcCH----hHhCCCEEEEEEecCCccchH-HHHHHHHHHHHHhCcccccceEEE----------E
Confidence 9999999999999999853 258999999998876544433 222335556777787777643211 0
Q ss_pred CCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028841 160 GGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAK 197 (203)
Q Consensus 160 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~ 197 (203)
...| ++|. ..+++..++++++++.+++.+.
T Consensus 143 ------~~~~-~~g~-l~d~~~~~~l~~~~~~~~~~~~ 172 (174)
T TIGR03566 143 ------DADF-ADYR-LASEALRARIALAVDRAAPLLA 172 (174)
T ss_pred ------hhhh-cccc-ccCHHHHHHHHHHHHHHHHHhc
Confidence 0012 1232 4578888899999999887764
No 18
>PRK00170 azoreductase; Reviewed
Probab=99.86 E-value=1.7e-21 Score=150.04 Aligned_cols=140 Identities=19% Similarity=0.148 Sum_probs=99.1
Q ss_pred CCceEEEEEcCC--c-chHHHHHHHHHHhcccCC--CceEEEEEcCCCCcHHHhc-----cCCCCC----------CCCC
Q 028841 1 MATKVYIVYYSM--Y-GHVEKLAEEIKKGASSVE--GVEAKLWQVPETLPEEVLG-----KMSAPP----------KSDV 60 (203)
Q Consensus 1 Mm~kilii~~S~--~-g~T~~la~~i~~~~~~~~--g~~v~~~~l~~~~~~~~~~-----~~~~~~----------~~d~ 60 (203)
|| ||++|++|+ . |+|.++++.+.+++++ . |.+++++||.+.+++ ++. +...+. .++.
T Consensus 1 Mm-kil~i~gSpr~~~s~s~~l~~~~~~~l~~-~~~~~~v~~~dL~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 77 (201)
T PRK00170 1 MS-KVLVIKSSILGDYSQSMQLGDAFIEAYKE-AHPDDEVTVRDLAAEPIP-VLDGEVVGALGKSAETLTPRQQEAVALS 77 (201)
T ss_pred CC-eEEEEecCCCCCCcHHHHHHHHHHHHHHH-hCCCCeEEEEECCCCCCC-CCCHHHHHhhcCCcccCCHHHHHHHHHH
Confidence 65 999999996 4 8999999999999987 5 889999999887642 111 111100 0111
Q ss_pred CCCChhhhhhcCeeEEeccccCCccHHHHHHHHHHhcccc-----c----ccCCCCCceEEEEecCCCCCC--hHHHHHH
Q 028841 61 PIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLW-----R----TQQLAGKPAGMFYSTGSQGGG--QETTALT 129 (203)
Q Consensus 61 ~~~~~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~-----~----~~~l~gK~~~~~~t~g~~~~~--~~~~~~~ 129 (203)
. ...+++.+||+|||+||+||+++|+.+|+||||+.... . .+.++||++.+++|+|+.... ......+
T Consensus 78 ~-~l~~~i~~AD~iV~~sP~y~~~~pa~LK~~iDrv~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~ 156 (201)
T PRK00170 78 D-ELLEEFLAADKIVIAAPMYNFSIPTQLKAYIDLIARAGKTFRYTENGPVGLVTGKKALLITSRGGIHKDGPTDMGVPY 156 (201)
T ss_pred H-HHHHHHHHCCEEEEeecccccCCcHHHHHHHHhheeCCceEEecCCCCccCcCCcEEEEEEeCCCCCCCCCcchHHHH
Confidence 1 12578999999999999999999999999999985421 1 135799999999988764321 1222444
Q ss_pred HHHHHHHcCcEEecC
Q 028841 130 AITQLVHHGMIFVPI 144 (203)
Q Consensus 130 l~~~l~~~g~~~v~~ 144 (203)
+...+...|+..++.
T Consensus 157 ~~~~~~~~G~~~~~~ 171 (201)
T PRK00170 157 LKTFLGFIGITDVEF 171 (201)
T ss_pred HHHHHHhcCCCceEE
Confidence 555666677776554
No 19
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=99.86 E-value=8.4e-21 Score=142.73 Aligned_cols=167 Identities=19% Similarity=0.122 Sum_probs=115.3
Q ss_pred eEEEEEcCC--cchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecccc
Q 028841 4 KVYIVYYSM--YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR 81 (203)
Q Consensus 4 kilii~~S~--~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y 81 (203)
||++|++|+ .|+|.++++.+.+.+.+ .|.+++++|+.+.+..++..+.. ..++. ....+++.+||+|||+||+|
T Consensus 1 kil~I~gS~r~~S~t~~l~~~~~~~l~~-~~~~~~~idl~~l~~~~~~~~~~--~~~~~-~~l~~~i~~AD~iI~~sP~Y 76 (171)
T TIGR03567 1 RVLTLSGSPSTPSRSSALLRHVREALQE-QGVEVDHLSVRDLPAEDLLFARF--DSPAI-KAATAQVAQADGVVVATPVY 76 (171)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHH-CCCeEEEEEecCCChHHhhhcCC--CCHHH-HHHHHHHHHCCEEEEECCcc
Confidence 689999996 58999999999999987 68899999998876544432211 11121 11368899999999999999
Q ss_pred CCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHH-HHHHHHHHHcCcEEecCCCcCCCCccccccccC
Q 028841 82 FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTA-LTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKG 160 (203)
Q Consensus 82 ~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~-~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~ 160 (203)
|+++|+.+|+|||++.. ..+.+|++++++++|..+ ... .+ ..|...|...|+.++...+..+. .
T Consensus 77 ~~sip~~LK~~iD~~~~----~~l~~K~v~~~~~gg~~~-~~~-~~~~~l~~~l~~l~~~~~~~~v~~~~-------~-- 141 (171)
T TIGR03567 77 KASYSGVLKALLDLLPQ----RALRGKVVLPIATGGSIA-HLL-AIDYALKPVLSALGARHILPGVFALD-------S-- 141 (171)
T ss_pred cCCCCHHHHHHHHhCCh----hhhCCCEEEEEEcCCchh-HHH-HHHHHHHHHHHHcCCccccceEEEEh-------h--
Confidence 99999999999999852 358999999888875433 322 23 24566777788865443322100 0
Q ss_pred CCCCccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 028841 161 GSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAG 194 (203)
Q Consensus 161 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~ 194 (203)
...|..+|....+++..+++++++++++.
T Consensus 142 -----~~~~d~~g~~~~d~~~~~~l~~~~~~~~~ 170 (171)
T TIGR03567 142 -----QIERDEDGTLQLDEEIKERLDEALEDLVQ 170 (171)
T ss_pred -----HhccccCCccccCHHHHHHHHHHHHHHHh
Confidence 00122233322577788888888887754
No 20
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=99.85 E-value=3.8e-20 Score=142.99 Aligned_cols=173 Identities=15% Similarity=0.149 Sum_probs=126.8
Q ss_pred ceEEEEEcCC--cchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCC--ChhhhhhcCeeEEec
Q 028841 3 TKVYIVYYSM--YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPII--TPNELAEADGFVFGF 78 (203)
Q Consensus 3 ~kilii~~S~--~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~--~~~~l~~aD~iiigs 78 (203)
.||++|.||. ..+++++++.+++.+.+ .|++++++|+.+++..+... ++.+.. ..+.+.+||++||+|
T Consensus 27 ~kI~~I~GSlR~~S~n~~la~~~~~~~~~-~g~~v~~idl~~lPl~~~d~-------~~~p~v~~l~~~v~~ADgvii~T 98 (219)
T TIGR02690 27 PRILLLYGSLRERSYSRLLAEEAARLLGC-EGRETRIFDPPGLPLPDAAH-------ADHPKVRELRQLSEWSEGQVWCS 98 (219)
T ss_pred CEEEEEECCCCCcchHHHHHHHHHHHHhh-cCCEEEEeCcccCCCCCcCc-------ccCHHHHHHHHHHHhCCEEEEeC
Confidence 4999999995 46899999999999987 58999999998764321100 011111 357889999999999
Q ss_pred cccCCccHHHHHHHHHHhccccc-ccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCcccccc
Q 028841 79 PTRFGMMAAQFKAFLDATGGLWR-TQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEK 157 (203)
Q Consensus 79 P~y~~~~~~~~k~~ld~~~~~~~-~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~ 157 (203)
|+|++++|+.+||+||++++.|. ...|.+|++++++++|+.+ +.. ++..|...+...++.+++.....+.
T Consensus 99 PEYn~sipg~LKNaiDwls~~~~~~~~~~~KpvaivgaSgg~~-g~r-a~~~LR~vl~~l~a~v~p~~v~i~~------- 169 (219)
T TIGR02690 99 PERHGAITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQVSGGSQ-SFN-AVNILRRLGRWMRMPTIPNQSSVAK------- 169 (219)
T ss_pred CccccCcCHHHHHHHHhcccCcccccccCCCcEEEEEeCCcHh-HHH-HHHHHHHHHHHCCCccccchhhhhh-------
Confidence 99999999999999999987653 1358999999988765443 333 4677888888999999887533211
Q ss_pred ccCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 028841 158 VKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKKLK 200 (203)
Q Consensus 158 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~ 200 (203)
....|..+|. ..+++..+.++++.+++...++..+
T Consensus 170 -------a~~~fd~~G~-l~d~~~~~~l~~~l~~~~~~~~~~~ 204 (219)
T TIGR02690 170 -------AFDEFDEAGR-MKPSDYYDRVVDVMEELTKFTLLTR 204 (219)
T ss_pred -------hHhhcCcCCC-CCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 0111333443 5678888889889999888877643
No 21
>PRK01355 azoreductase; Reviewed
Probab=99.85 E-value=1.1e-20 Score=145.36 Aligned_cols=143 Identities=19% Similarity=0.121 Sum_probs=100.9
Q ss_pred CCceEEEEEcCCc----chHHHHHHHHHHhcccC-CCceEEEEEcCCCCcHHHhccC---CCCCCCCCCCCChhhhhhcC
Q 028841 1 MATKVYIVYYSMY----GHVEKLAEEIKKGASSV-EGVEAKLWQVPETLPEEVLGKM---SAPPKSDVPIITPNELAEAD 72 (203)
Q Consensus 1 Mm~kilii~~S~~----g~T~~la~~i~~~~~~~-~g~~v~~~~l~~~~~~~~~~~~---~~~~~~d~~~~~~~~l~~aD 72 (203)
|| |||+|++|++ |+|..+++.+.+++++. .+.+++.+||.+.+++.|+.++ .++..++......+++.+||
T Consensus 1 M~-kIliI~gSpr~~~~s~s~~l~~~~~~~~~~~~~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD 79 (199)
T PRK01355 1 MS-KVLVIKGSMVAKEKSFSSALTDKFVEEYKKVNPNDEIIILDLNETKVGSVTLTSENFKTFFKEEVSDKYINQLKSVD 79 (199)
T ss_pred CC-eEEEEECCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcccCCHHHHHhhcCchhHHHHHHHHHhCC
Confidence 55 9999999974 78999999999999862 3579999999987654322111 11211222122368999999
Q ss_pred eeEEeccccCCccHHHHHHHHHHhccc-----c---c----ccCCCCCceEEEEecCCCCCCh--HHHHHHHHHHHHHcC
Q 028841 73 GFVFGFPTRFGMMAAQFKAFLDATGGL-----W---R----TQQLAGKPAGMFYSTGSQGGGQ--ETTALTAITQLVHHG 138 (203)
Q Consensus 73 ~iiigsP~y~~~~~~~~k~~ld~~~~~-----~---~----~~~l~gK~~~~~~t~g~~~~~~--~~~~~~l~~~l~~~g 138 (203)
+|||+||+||+++|++||+||||+... + . .+.++||++.+++|+|++.... .....++...+...|
T Consensus 80 ~iV~~sP~y~~~ipa~LK~~iDrv~~~~~~f~y~~~~~~~~~gll~~kk~~vi~T~G~~~~~~~~~~~~~~l~~~~~~~G 159 (199)
T PRK01355 80 KVVISCPMTNFNVPATLKNYLDHIAVANKTFSYKYSKKGDAIGLLDHLKVQILTTQGAPLGWYPWGSHTNYLEGTWEFLG 159 (199)
T ss_pred EEEEEcCccccCChHHHHHHHHHHHhcCCceEecccCCCCcccccCCCEEEEEEecCCCCCccCccchHHHHHHHHHhcC
Confidence 999999999999999999999998532 1 0 1347899999999988643221 223445666666677
Q ss_pred cEEecC
Q 028841 139 MIFVPI 144 (203)
Q Consensus 139 ~~~v~~ 144 (203)
+..+..
T Consensus 160 ~~~~~~ 165 (199)
T PRK01355 160 AKVVDS 165 (199)
T ss_pred CCceeE
Confidence 776544
No 22
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.84 E-value=3.9e-20 Score=152.02 Aligned_cols=141 Identities=33% Similarity=0.457 Sum_probs=121.7
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFG 83 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~ 83 (203)
||+|+|.|++|||+.+|++|++++.+ .|++|+++++...+++++ .+.+.+|++||+|||++++
T Consensus 248 ~V~l~Y~smyg~T~~ma~aiaegl~~-~gv~v~~~~~~~~~~~eI----------------~~~i~~a~~~vvGsPT~~~ 310 (388)
T COG0426 248 KVDLIYDSMYGNTEKMAQAIAEGLMK-EGVDVEVINLEDADPSEI----------------VEEILDAKGLVVGSPTING 310 (388)
T ss_pred eEEEEEecccCCHHHHHHHHHHHhhh-cCCceEEEEcccCCHHHH----------------HHHHhhcceEEEecCcccC
Confidence 69999999999999999999999999 899999999998876655 3579999999999999999
Q ss_pred ccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccCCCC
Q 028841 84 MMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSP 163 (203)
Q Consensus 84 ~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~~~ 163 (203)
.+++.+..+|-.+... ..++|++++|+++||.+++... +.+.|...|..+....+ +++
T Consensus 311 ~~~p~i~~~l~~v~~~----~~~~k~~~vfgS~GW~g~av~~----i~~~l~~~g~~~~~~~i----------~vk---- 368 (388)
T COG0426 311 GAHPPIQTALGYVLAL----APKNKLAGVFGSYGWSGEAVDL----IEEKLKDLGFEFGFDGI----------EVK---- 368 (388)
T ss_pred CCCchHHHHHHHHHhc----cCcCceEEEEeccCCCCcchHH----HHHHHHhcCcEEeccce----------EEE----
Confidence 9999999999988643 5788999999999998877543 66788888888865543 234
Q ss_pred CccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 028841 164 YGAGTFAGDGSRQPTELELEQAFHQGKHIAG 194 (203)
Q Consensus 164 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~ 194 (203)
..|+++++++|+++|++|++
T Consensus 369 -----------~~P~~~~l~~c~e~g~~la~ 388 (388)
T COG0426 369 -----------FRPTEEDLKKCEEAGRDLAQ 388 (388)
T ss_pred -----------ecCCHHHHHHHHHHHHHhcC
Confidence 48999999999999999874
No 23
>PRK12359 flavodoxin FldB; Provisional
Probab=99.83 E-value=8.3e-19 Score=131.15 Aligned_cols=162 Identities=20% Similarity=0.207 Sum_probs=114.0
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecccc-C
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR-F 82 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y-~ 82 (203)
|++|+|+|.+|||+.+|+.|++.+.. ..++++++.+.. .+.+.++|.||||+|+| .
T Consensus 2 ki~I~Y~S~TGNTe~vAe~I~~~lg~---~~v~v~~i~~~~--------------------~~~l~~yD~iIlG~pTw~~ 58 (172)
T PRK12359 2 KIGLFYGSSTCYTEMAAEKIRDIIGE---ELVDLHNLKDDP--------------------PKLMEQYDVLILGIPTWDF 58 (172)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHhCC---CeEEEEEcccCC--------------------hhHHccCCEEEEEecccCC
Confidence 89999999999999999999999853 247788877653 35788999999999998 5
Q ss_pred CccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCC-C-hHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccC
Q 028841 83 GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGG-G-QETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKG 160 (203)
Q Consensus 83 ~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~-~-~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~ 160 (203)
+.+|..+..|++.+... .|+||++++|+++++.+. . ...++..+.+.+...|+.++|...+.|++..+...+..
T Consensus 59 Gel~~d~~~~~~~l~~~----dl~gK~vAlFG~Gd~~~y~~~f~~a~~~l~~~l~~~Ga~ivG~~~~~gY~f~~s~a~~~ 134 (172)
T PRK12359 59 GEIQEDWEAVWDQLDDL----NLEGKIVALYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFVGYWPTEGYEFTSSKPLTA 134 (172)
T ss_pred CcCcHHHHHHHHHHhhC----CCCCCEEEEEeCCCCccchHHHHHHHHHHHHHHHhCCCeEEeeEeCCCcccccceeeEc
Confidence 77899999999887533 689999999998775322 2 23345667888888999999987777765333222220
Q ss_pred CCCCccceecC-C-CCCCCCHHHHHHHHHHHHHHHHHH
Q 028841 161 GSPYGAGTFAG-D-GSRQPTELELEQAFHQGKHIAGIA 196 (203)
Q Consensus 161 ~~~~g~~~~~~-~-~~~~~~~~~~~~~~~~g~~l~~~~ 196 (203)
+.+.|.| . -+...++..-+++..+.++|...+
T Consensus 135 ----~~~~f~gl~lD~~nq~~~t~~ri~~W~~~~~~~~ 168 (172)
T PRK12359 135 ----DGQLFVGLALDEVNQYDLSDERIQQWCEQILLEM 168 (172)
T ss_pred ----CCCEEEEEEEcCCCchhhhHHHHHHHHHHHHHHH
Confidence 1112444 0 111222334567777777776443
No 24
>PRK09739 hypothetical protein; Provisional
Probab=99.82 E-value=3.3e-20 Score=142.76 Aligned_cols=117 Identities=21% Similarity=0.230 Sum_probs=87.5
Q ss_pred CceEEEEEcCC--cchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCC--------CCCCCCCCCCChhhhhhc
Q 028841 2 ATKVYIVYYSM--YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMS--------APPKSDVPIITPNELAEA 71 (203)
Q Consensus 2 m~kilii~~S~--~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~--------~~~~~d~~~~~~~~l~~a 71 (203)
|+|||+|++|+ .|+|.++++.+.+++++ .|.+++++||.+.+++.+..+.. |...++. ....+++.+|
T Consensus 3 mmkiliI~~sp~~~s~s~~l~~~~~~~~~~-~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~A 80 (199)
T PRK09739 3 SMRIYLVWAHPRHDSLTAKVAEAIHQRAQE-RGHQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEV-HQLYSELLEH 80 (199)
T ss_pred CceEEEEEcCCCCCCcHHHHHHHHHHHHHH-CCCEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHH-HHHHHHHHhC
Confidence 34999999997 57899999999999998 68899999998875443332211 1111111 1236789999
Q ss_pred CeeEEeccccCCccHHHHHHHHHHhccc-c--c-ccCCCCCceEEEEecCCCC
Q 028841 72 DGFVFGFPTRFGMMAAQFKAFLDATGGL-W--R-TQQLAGKPAGMFYSTGSQG 120 (203)
Q Consensus 72 D~iiigsP~y~~~~~~~~k~~ld~~~~~-~--~-~~~l~gK~~~~~~t~g~~~ 120 (203)
|.|||++|+||+++|+.+|+|||++... | . ...+.+|++.++.++|+..
T Consensus 81 D~iV~~~P~y~~~~Pa~LK~~iD~v~~~g~~y~~~~~l~~k~~~~v~t~g~~~ 133 (199)
T PRK09739 81 DALVFVFPLWWYSFPAMLKGYIDRVWNNGLAYGDGHKLPFNKVRWVALVGGSK 133 (199)
T ss_pred CEEEEECchhhhcchHHHHHHHHHHccccccccCCccCCCCeEEEEEecCCCh
Confidence 9999999999999999999999998532 1 1 1347889999888876543
No 25
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=99.82 E-value=9.9e-19 Score=130.95 Aligned_cols=121 Identities=21% Similarity=0.305 Sum_probs=95.7
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecccc-C
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR-F 82 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y-~ 82 (203)
||+|+|+|.+|||+++|+.|++.+.. .+++++++.+.+ ..++.++|.||||+|+| +
T Consensus 1 ~i~IiY~S~tGnTe~vA~~Ia~~l~~---~~~~i~~~~~~~--------------------~~~l~~~d~ii~gspty~~ 57 (167)
T TIGR01752 1 KIGIFYGTDTGNTEGIAEKIQKELGE---DDVDVFNIAKAS--------------------KEDLNAYDKLILGTPTWGV 57 (167)
T ss_pred CEEEEEECCCChHHHHHHHHHHHhCC---CceEEEEcccCC--------------------HhHHhhCCEEEEEecCCCC
Confidence 68999999999999999999999964 357888887643 24688999999999999 5
Q ss_pred CccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCC-C-ChHHHHHHHHHHHHHcCcEEecCCCcCCCC
Q 028841 83 GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQG-G-GQETTALTAITQLVHHGMIFVPIGYTFGAG 151 (203)
Q Consensus 83 ~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~-~-~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~ 151 (203)
+.+|..++.|++.+... .++||++++|++++..+ + ....+...+.+.|...|+.+++...+.|++
T Consensus 58 g~~p~~~~~fl~~l~~~----~l~gk~v~~fg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~ig~~~~~gy~ 124 (167)
T TIGR01752 58 GELQEDWEDFLPTLEEL----DFTGKTVALFGLGDQEGYSETFCDGMGILYDKIKARGAKVVGFWPTDGYH 124 (167)
T ss_pred CcCcHHHHHHHHHhhcC----CCCCCEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCeEEceecCCCcc
Confidence 78999999999987532 57899999999875421 1 122335667888888999999987665654
No 26
>PRK13556 azoreductase; Provisional
Probab=99.81 E-value=3.7e-19 Score=137.81 Aligned_cols=143 Identities=15% Similarity=0.089 Sum_probs=99.4
Q ss_pred CceEEEEEcCCc----chHHHHHHHHHHhcccC-CCceEEEEEcCCCCcHH----HhccCC-----CCCC------CCCC
Q 028841 2 ATKVYIVYYSMY----GHVEKLAEEIKKGASSV-EGVEAKLWQVPETLPEE----VLGKMS-----APPK------SDVP 61 (203)
Q Consensus 2 m~kilii~~S~~----g~T~~la~~i~~~~~~~-~g~~v~~~~l~~~~~~~----~~~~~~-----~~~~------~d~~ 61 (203)
|+|||+|.+|+. ++|+++++++.+.+.+. .|.+|+++||.+..++. ....+. |... .+..
T Consensus 1 m~kiL~I~~spr~~~~S~s~~l~~~~~~~~~~~~~~~~V~~~DL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (208)
T PRK13556 1 MSKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFELTEEEAKAVAVA 80 (208)
T ss_pred CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCHHHHHhhccccccccCCHHHHHHHHHH
Confidence 349999999963 78999999999999862 37899999998765421 111111 1111 0111
Q ss_pred CCChhhhhhcCeeEEeccccCCccHHHHHHHHHHhccc-----cc----ccCCCCCceEEEEecCCCC-----CChHHHH
Q 028841 62 IITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGL-----WR----TQQLAGKPAGMFYSTGSQG-----GGQETTA 127 (203)
Q Consensus 62 ~~~~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~-----~~----~~~l~gK~~~~~~t~g~~~-----~~~~~~~ 127 (203)
+...+.+.+||.|||++|+||+++|+.+|+||||+.+. +. .+.+.+|++.+++++|+.. ++.....
T Consensus 81 ~~~~~~l~~AD~iVi~~P~yn~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~tsGg~~~~~~~~~~~~~~ 160 (208)
T PRK13556 81 DKYLNQFLEADKVVFAFPLWNFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNARGGVYSEGPAAEVEMAV 160 (208)
T ss_pred HHHHHHHHHCCEEEEeccccccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEeCCCCCCCCCchhhhccH
Confidence 12357899999999999999999999999999998754 11 1358899999999987643 1222223
Q ss_pred HHHHHHHHHcCcEEecC
Q 028841 128 LTAITQLVHHGMIFVPI 144 (203)
Q Consensus 128 ~~l~~~l~~~g~~~v~~ 144 (203)
.++...|...|+..++.
T Consensus 161 ~~l~~il~~~G~~~~~~ 177 (208)
T PRK13556 161 KYVASMMGFFGVTNMET 177 (208)
T ss_pred HHHHHHHHhcCCCceeE
Confidence 45666777777766553
No 27
>PRK09271 flavodoxin; Provisional
Probab=99.81 E-value=9.7e-19 Score=130.12 Aligned_cols=142 Identities=15% Similarity=0.164 Sum_probs=101.4
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccC-
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRF- 82 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~- 82 (203)
|++|+|+|++|||++||+.|++++.. .|+++++.++...++.+. ..++.++|+||||||+|+
T Consensus 2 kv~IvY~S~tGnTe~~A~~ia~~l~~-~g~~v~~~~~~~~~~~~~----------------~~~~~~~d~vilgt~T~~~ 64 (160)
T PRK09271 2 RILLAYASLSGNTREVAREIEERCEE-AGHEVDWVETDVQTLAEY----------------PLDPEDYDLYLLGTWTDNA 64 (160)
T ss_pred eEEEEEEcCCchHHHHHHHHHHHHHh-CCCeeEEEeccccccccc----------------ccCcccCCEEEEECcccCC
Confidence 99999999999999999999999998 789998888765432110 235678999999999997
Q ss_pred CccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCC--hHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccC
Q 028841 83 GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGG--QETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKG 160 (203)
Q Consensus 83 ~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~--~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~ 160 (203)
|.+|..++.|++++... ..++|++++|++++...++ ...+...+...|... ...+ +++
T Consensus 65 G~~p~~~~~f~~~l~~~----~~~~k~~avfgsgd~~~~~~~f~~a~~~~~~~l~~~-----~~~l----------~~~- 124 (160)
T PRK09271 65 GRTPPEMKRFIAELAET----IGKPPNVAVFGTGETQWGEEYYCGAVHRMARFFGSS-----YPRL----------KIE- 124 (160)
T ss_pred CcCCHHHHHHHHHHHHH----hccCCeEEEEecCCCCcCccHHHHHHHHHHHHHhcc-----CCce----------eee-
Confidence 55677899999998532 3478999999998433222 222334444555321 1111 122
Q ss_pred CCCCccceecCCCCCCCCH-HHHHHHHHHHHHHHHHH
Q 028841 161 GSPYGAGTFAGDGSRQPTE-LELEQAFHQGKHIAGIA 196 (203)
Q Consensus 161 ~~~~g~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~ 196 (203)
..|++ .|+++++++++++++.+
T Consensus 125 --------------~~p~~~~d~~~~~~~~~~~~~~~ 147 (160)
T PRK09271 125 --------------QMPHGERDAAAIDNWTDKVLALC 147 (160)
T ss_pred --------------cCCccchhHHHHHHHHHHHHHHh
Confidence 35554 57899999999999877
No 28
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=99.77 E-value=8.1e-18 Score=122.49 Aligned_cols=106 Identities=19% Similarity=0.220 Sum_probs=80.1
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEE-EEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecccc-
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAK-LWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR- 81 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~-~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y- 81 (203)
|++|+|+|.+|||+++|+.|++.+.. .|++++ +.++.+... ...++.++|.||||||+|
T Consensus 2 ~i~IiY~S~tGnTe~iA~~ia~~l~~-~g~~v~~~~~~~~~~~------------------~~~~~~~~d~iilgs~t~~ 62 (140)
T TIGR01754 2 RILLAYLSLSGNTEEVAFMIQDYLQK-DGHEVDILHRIGTLAD------------------APLDPENYDLVFLGTWTWE 62 (140)
T ss_pred eEEEEEECCCChHHHHHHHHHHHHhh-CCeeEEeccccccccc------------------CcCChhhCCEEEEEcCeeC
Confidence 89999999999999999999999987 688776 444443210 022567899999999998
Q ss_pred CCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCC--hHHHHHHHHHHHH
Q 028841 82 FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGG--QETTALTAITQLV 135 (203)
Q Consensus 82 ~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~--~~~~~~~l~~~l~ 135 (203)
+|.+|..++.|++.+. .++|++++|++++...++ ...+...+.+.|.
T Consensus 63 ~g~~p~~~~~fl~~l~-------~~~k~~avfgtgd~~~~~~~f~~a~~~~~~~l~ 111 (140)
T TIGR01754 63 RGRTPDEMKDFIAELG-------YKPSNVAIFGTGETQWGDDLYCGAVDRLAHFFG 111 (140)
T ss_pred CCcCCHHHHHHHHHhc-------ccCCEEEEEEcCCCCcCcchHhHHHHHHHHHHc
Confidence 5778889999999984 478999999998544332 2234555566653
No 29
>PRK06934 flavodoxin; Provisional
Probab=99.77 E-value=1.6e-18 Score=133.77 Aligned_cols=112 Identities=20% Similarity=0.280 Sum_probs=78.8
Q ss_pred ceEEEEEcCCc------------------------chHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCC
Q 028841 3 TKVYIVYYSMY------------------------GHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKS 58 (203)
Q Consensus 3 ~kilii~~S~~------------------------g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~ 58 (203)
.|+||+|+|+. |||+++|+.|++.+.. .=.+++..+.+..+.+.+..........
T Consensus 36 ~k~Lv~yfs~~~~~~~~~~~~~~~~s~~~~~~~~~GnTk~vAe~Ia~~~ga-Dl~eI~~~~~Y~~~yd~~~~~a~~E~~~ 114 (221)
T PRK06934 36 RRVLIVYFSQPEDVKLEGVDGVSGASILQKNGEVLGSTQYVAQIIQEETGG-DLFRIETVKPYPRQHDPLLKYAEQEVKE 114 (221)
T ss_pred CceEEEEEeccCCcccccccccccccccccCCCCCCHHHHHHHHHHHHHCC-CEEEEEEccccCCCCchhhhHHHHhhhc
Confidence 48999999976 8999999999999864 2223444443333222222211111111
Q ss_pred CC-CCC--ChhhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCC
Q 028841 59 DV-PII--TPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGG 122 (203)
Q Consensus 59 d~-~~~--~~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~ 122 (203)
+. |+. ..+++.+||.|+||+|+||+.+|++++.||++. ++.||.++.|+|+|+.+.+
T Consensus 115 ~~~P~L~~~~~dl~~YD~I~IG~PIWwg~~P~~V~tFLe~~-------d~~GK~I~pF~T~ggsg~g 174 (221)
T PRK06934 115 GGRPEMREKIQNLADYDQIFIGYPIWWYKMPMVMYSFFEQH-------DFSGKTLIPFTTHGGSRFS 174 (221)
T ss_pred CCCHHHHHHHHhHHhCCEEEEEcchhhccccHHHHHHHHhc-------CCCCCEEEEEEecCCCCcc
Confidence 11 221 246899999999999999999999999999998 5899999999999765443
No 30
>PRK07116 flavodoxin; Provisional
Probab=99.76 E-value=5.4e-18 Score=126.11 Aligned_cols=109 Identities=23% Similarity=0.362 Sum_probs=73.2
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHH--hcc-CC--CC--CCCCCCCC--Chhhhhhc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEV--LGK-MS--AP--PKSDVPII--TPNELAEA 71 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~--~~~-~~--~~--~~~d~~~~--~~~~l~~a 71 (203)
|| |++|+|+|.+|||+++|+.|++.+.. .. +++....+..-.+. ... .. .. .....+.. ...++.++
T Consensus 2 m~-k~lIvY~S~tGnT~~iA~~Ia~~l~~-d~--~~i~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~ 77 (160)
T PRK07116 2 NN-KTLVAYFSATGTTKKVAEKLAEVTGA-DL--FEIKPEQPYTAADLDWNDKKSRSSVEMADKSSRPAIAKKIENIAEY 77 (160)
T ss_pred CC-cEEEEEECCCCcHHHHHHHHHHHhcC-Ce--EEEeeCCCCCcchhhhhHhhhhHHHHhhcccchHHHHHHHhhHHhC
Confidence 55 99999999999999999999999964 22 23333222110000 000 00 00 00000100 13468899
Q ss_pred CeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCC
Q 028841 72 DGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQG 120 (203)
Q Consensus 72 D~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~ 120 (203)
|.||||+|+|++.+|+.++.|++++ .+.+|++++|+|+|+.+
T Consensus 78 D~Iiig~Pv~~~~~p~~v~~fl~~~-------~l~~k~v~~f~T~g~~~ 119 (160)
T PRK07116 78 DVIFLGFPIWWYVAPRIINTFLESY-------DFSGKTVIPFATSGGSG 119 (160)
T ss_pred CEEEEECChhccccHHHHHHHHHhc-------CCCCCEEEEEEeCCCCC
Confidence 9999999999999999999999986 47899999999986654
No 31
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=99.75 E-value=7.4e-18 Score=124.53 Aligned_cols=106 Identities=25% Similarity=0.441 Sum_probs=65.4
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHh------ccCCCCC--CCCCCCC--ChhhhhhcCe
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVL------GKMSAPP--KSDVPII--TPNELAEADG 73 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~------~~~~~~~--~~d~~~~--~~~~l~~aD~ 73 (203)
|+||||+|.+|||+++|+.|++.+. .++.-+...+..+.... ....... ....|++ ...++.+||.
T Consensus 1 K~LVvYyS~tGnT~~vA~~Ia~~~g----adi~eI~~~~~Y~~~~~~y~~~~~~~~~e~~~~~~~P~i~~~~~d~~~YD~ 76 (156)
T PF12682_consen 1 KTLVVYYSRTGNTKKVAEKIAEKTG----ADIFEIEPVKPYPSDDLDYRKCISRAKREIKDNNERPEIKPQIPDLSDYDT 76 (156)
T ss_dssp -EEEEE--SSSHHHHHHHHHHHCCT-----EEEE-BBSTTSSTGGCSCCHCCCHHHHHHTTTT----BC---S-GGG-SE
T ss_pred CEEEEEECCCchHHHHHHHHHHHHC----CCEEEEEeCCCCCcchhhHHHHHHHHHHHHhcccccccccccccCcccCCE
Confidence 7899999999999999999999874 34444433332232100 0000000 1111222 1347899999
Q ss_pred eEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCC
Q 028841 74 FVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQG 120 (203)
Q Consensus 74 iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~ 120 (203)
|+||+|+||+.+|++++.||++. +++||.++.|+|+|+.+
T Consensus 77 I~lG~PvW~~~~~~pv~tFL~~~-------~~~gK~v~~F~T~ggs~ 116 (156)
T PF12682_consen 77 IFLGTPVWWGTPPPPVRTFLEQY-------DFSGKTVIPFCTSGGSG 116 (156)
T ss_dssp EEEEEEEETTEE-CHHHHHHHCT-------TTTTSEEEEEEE-SS--
T ss_pred EEEechHHcCCCCHHHHHHHHhc-------CCCCCcEEEEEeeCCCC
Confidence 99999999999999999999987 58999999999987654
No 32
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=99.75 E-value=7e-17 Score=119.02 Aligned_cols=148 Identities=24% Similarity=0.216 Sum_probs=106.9
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
|| ||+|+|+|.+|||+.||+.|++.+++ .|.++.+....... ...+..+|.+++|+|+
T Consensus 1 M~-ki~Ivy~S~tGnTe~vA~~i~~~l~~-~~~~~~~~~~~~~~--------------------~~~~~~~d~~~~g~~t 58 (151)
T COG0716 1 MM-KILIVYGSRTGNTEKVAEIIAEELGA-DGFEVDIDIRPGIK--------------------DDLLESYDELLLGTPT 58 (151)
T ss_pred CC-eEEEEEEcCCCcHHHHHHHHHHHhcc-CCceEEEeecCCcc--------------------hhhhccCCEEEEEeCC
Confidence 54 99999999999999999999999998 67777433332221 1233689999999999
Q ss_pred cC-CccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCC-hHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccc
Q 028841 81 RF-GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGG-QETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKV 158 (203)
Q Consensus 81 y~-~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~-~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~ 158 (203)
|. +..|..+..|++.+.. ..+++|++++|+++...... .......+...+...|....+..-..++
T Consensus 59 ~~~ge~~~~~~~f~~~~~~----~~~~~k~~a~~g~gd~~~~~~fc~~~~~~~~~~~~~g~~~~~~~~~~~~-------- 126 (151)
T COG0716 59 WGAGELPDDWYDFIEELEP----IDFKGKLVAVFGLGDQSYYGYFCEAGGNFEDILEEKGAKAVGILETLGY-------- 126 (151)
T ss_pred CCCCcCCccHHHHHHHhcc----cCcCCceEEEEeccccccchHHHHHHHHHHHHHHHcCccccccccccce--------
Confidence 98 5566699999999864 26899999999996554444 3334556777777777544433211111
Q ss_pred cCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 028841 159 KGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGI 195 (203)
Q Consensus 159 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 195 (203)
.....|++++.++++++++++.+.
T Consensus 127 -------------~~~~~~~e~~~~~~~~w~~~~~~~ 150 (151)
T COG0716 127 -------------IFDASPNEEDEKRIKEWVKQILNE 150 (151)
T ss_pred -------------eccCCCCCccHHHHHHHHHHHHhh
Confidence 001368889999999999998754
No 33
>PRK13555 azoreductase; Provisional
Probab=99.74 E-value=5.7e-17 Score=125.16 Aligned_cols=139 Identities=17% Similarity=0.099 Sum_probs=94.8
Q ss_pred CCceEEEEEcCCc----chHHHHHHHHHHhcccC-CCceEEEEEcCCCCcHHH----hccCCCC-----CCCC------C
Q 028841 1 MATKVYIVYYSMY----GHVEKLAEEIKKGASSV-EGVEAKLWQVPETLPEEV----LGKMSAP-----PKSD------V 60 (203)
Q Consensus 1 Mm~kilii~~S~~----g~T~~la~~i~~~~~~~-~g~~v~~~~l~~~~~~~~----~~~~~~~-----~~~d------~ 60 (203)
|| |+|+|++|+. +.|..+++.+.+.+++. .+.+|+.+||.+.+++.+ +...... ..++ .
T Consensus 1 M~-kiL~I~asp~~~~~S~s~~la~~f~~~~~~~~p~~~V~~~DL~~~~~p~l~~~~~~a~~~~~~~~~~~~~~~~~~~~ 79 (208)
T PRK13555 1 MS-KVLFVKANDRPAEQAVSSKMYETFVSTYKEANPNTEITELDLFALDLPYYGNIAISGGYKRSQGMELTAEEEKAVAT 79 (208)
T ss_pred CC-eEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHhhccCCCcccCCHHHHHHHHH
Confidence 54 9999999964 67999999999999873 237999999998764311 1111111 0000 0
Q ss_pred CCCChhhhhhcCeeEEeccccCCccHHHHHHHHHHhccc---c------cccCCCCCceEEEEecCCCCCCh-----HHH
Q 028841 61 PIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGL---W------RTQQLAGKPAGMFYSTGSQGGGQ-----ETT 126 (203)
Q Consensus 61 ~~~~~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~---~------~~~~l~gK~~~~~~t~g~~~~~~-----~~~ 126 (203)
.....+.+.+||.|||++|+||+++|+.+|+|||++... + ..+.++||++.+++++|+...+. ...
T Consensus 80 ~~~~~~~~~~AD~lvi~~P~~n~~~Pa~LK~~iD~v~~~G~tF~~~~~~~~gll~~k~~~vi~~~gg~~~~~~~~~~~~~ 159 (208)
T PRK13555 80 VDQYLNQFLEADKVVFAFPLWNFTVPAPLITYISYLSQAGKTFKYTANGPEGLAGGKKVVVLGARGSDYSSEQMAPMEMA 159 (208)
T ss_pred HHHHHHHHHHcCEEEEEcCcccccchHHHHHHHHHHhcCCceeecCCCCCccccCCCeEEEEEcCCCCCCCCCchhhhhH
Confidence 011357899999999999999999999999999998643 1 11458999999999977643221 212
Q ss_pred HHHHHHHHHHcCcE
Q 028841 127 ALTAITQLVHHGMI 140 (203)
Q Consensus 127 ~~~l~~~l~~~g~~ 140 (203)
..++...|...|+.
T Consensus 160 ~~yl~~il~~~Gi~ 173 (208)
T PRK13555 160 VNYVTTVLGFWGIT 173 (208)
T ss_pred HHHHHHHHHhcCCC
Confidence 24455555555554
No 34
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=99.73 E-value=6.9e-17 Score=124.29 Aligned_cols=139 Identities=25% Similarity=0.244 Sum_probs=96.4
Q ss_pred eEEEEEcCCc---chHHHHHHHHHHhcccCCC-ceEEEEEcCCCCcHHHhcc-------CC-CCCCCCC-CCCChhhhhh
Q 028841 4 KVYIVYYSMY---GHVEKLAEEIKKGASSVEG-VEAKLWQVPETLPEEVLGK-------MS-APPKSDV-PIITPNELAE 70 (203)
Q Consensus 4 kilii~~S~~---g~T~~la~~i~~~~~~~~g-~~v~~~~l~~~~~~~~~~~-------~~-~~~~~d~-~~~~~~~l~~ 70 (203)
|||+|++|+. ++|..+++.+.+++++ .+ .+++++||... +...+.. .. ..+..|. .+. .+.+.+
T Consensus 2 kiLvI~asp~~~~S~s~~l~~~~~~~~~~-~~~~~v~~~dL~~~-~~p~l~~~~~~~~~~~~~~~~~d~~~~~-~~~l~~ 78 (199)
T PF02525_consen 2 KILVINASPRPEGSFSRALADAFLEGLQE-AGPHEVEIRDLYEE-FLPVLDSECFAAFRTYEQGPAIDVQSEQ-IEELLW 78 (199)
T ss_dssp EEEEEE--SSTTTSHHHHHHHHHHHHHHH-HTTSEEEEEETTTT-T--SSSHHHHHHHHHHHHTHHHHHHHHH-HHHHHH
T ss_pred EEEEEEcCCCCccCHHHHHHHHHHHHHHH-cCCCEEEEEECccc-ccccchHHHHHhhhhhhhhhhhhHHHHH-HHHHHH
Confidence 9999999975 5799999999999999 67 89999999886 2111110 00 0000111 111 378999
Q ss_pred cCeeEEeccccCCccHHHHHHHHHHhccc---c--------cccCCCCCceEEEEecCCCC---------C-ChHHHHHH
Q 028841 71 ADGFVFGFPTRFGMMAAQFKAFLDATGGL---W--------RTQQLAGKPAGMFYSTGSQG---------G-GQETTALT 129 (203)
Q Consensus 71 aD~iiigsP~y~~~~~~~~k~~ld~~~~~---~--------~~~~l~gK~~~~~~t~g~~~---------~-~~~~~~~~ 129 (203)
||.|||++|+||+++|+.||.|||++... + ..+.++||++.+++|+|+.. + ..+..+.+
T Consensus 79 AD~iV~~~Pl~~~~~Pa~lK~~iD~v~~~g~~~~~~~g~~~~~~~L~gKk~~~i~t~g~~~~~~~~~g~~~~~~~~~~~~ 158 (199)
T PF02525_consen 79 ADHIVFAFPLYWFSMPAQLKGWIDRVFTPGFTFYTPDGKYPSGGLLKGKKALLIVTSGGPEYSYGPPGIPGRSMDHLLPY 158 (199)
T ss_dssp SSEEEEEEEEBTTBC-HHHHHHHHHHSHTTTSEEETTSTTCGEESTTTSEEEEEEEESSSGGGGSTTSSTTSHHHHHHHH
T ss_pred cCcceEeccceecccChhHHHHHHHhCcCCeeeeccccccccccccccccEEEEEcCCCChHHhcccCCCCCChhhhHHH
Confidence 99999999999999999999999998321 1 13478999999999988751 1 22344445
Q ss_pred HHHHHHHcCcEEecCC
Q 028841 130 AITQLVHHGMIFVPIG 145 (203)
Q Consensus 130 l~~~l~~~g~~~v~~~ 145 (203)
+...+..+|+..+...
T Consensus 159 ~~~~~~~~G~~~~~~~ 174 (199)
T PF02525_consen 159 LRGILKFCGIKDVESF 174 (199)
T ss_dssp HHHHHHHTTEEEEEEE
T ss_pred HHHHHHhCCCceeeEE
Confidence 6666777899998754
No 35
>PRK09004 FMN-binding protein MioC; Provisional
Probab=99.73 E-value=9.6e-17 Score=117.45 Aligned_cols=119 Identities=12% Similarity=0.089 Sum_probs=96.8
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecccc
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR 81 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y 81 (203)
|+||+|+|+|.+|||+.+|+.|++.+.+ .|.++++++..+ .+++.++|.+||++|+|
T Consensus 1 M~~i~I~ygS~tGnae~~A~~l~~~~~~-~g~~~~~~~~~~----------------------~~~l~~~~~li~~~sT~ 57 (146)
T PRK09004 1 MADITLISGSTLGGAEYVADHLAEKLEE-AGFSTETLHGPL----------------------LDDLSASGLWLIVTSTH 57 (146)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHH-cCCceEEeccCC----------------------HHHhccCCeEEEEECCC
Confidence 5699999999999999999999999988 788888876532 34678899999999999
Q ss_pred -CCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCC
Q 028841 82 -FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 82 -~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~ 145 (203)
.|.+|...+.|++++... ...++|+++++|+.+++...........+.+.|...|+..+...
T Consensus 58 G~Ge~p~~~~~f~~~L~~~--~~~l~g~~~aVfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~ 120 (146)
T PRK09004 58 GAGDLPDNLQPFFEELQEQ--KPDLSQVRFAAIGIGSSEYDTFCGAIDKLEQLLKAKGAKQIGET 120 (146)
T ss_pred CCCCCChhHHHHHHHHHhc--CCCCCCCEEEEEeecCCCHHHHhHHHHHHHHHHHHcCCeEeecc
Confidence 699999999999987531 23589999999999877543333345667788888999988654
No 36
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=99.72 E-value=3.5e-17 Score=121.01 Aligned_cols=149 Identities=24% Similarity=0.303 Sum_probs=98.5
Q ss_pred EEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCCcc
Q 028841 6 YIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMM 85 (203)
Q Consensus 6 lii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~~~ 85 (203)
+|+|+|.+|||++||++|++.+.. .+++++.+.+ +.+.+||.|++|+++|.|.+
T Consensus 1 lIvYsS~TGNTkkvA~aI~~~l~~-----~~~~~~~~~~---------------------~~~~~yD~i~lG~w~d~G~~ 54 (160)
T PF12641_consen 1 LIVYSSRTGNTKKVAEAIAEALGA-----KDIVSVEEPP---------------------EDLEDYDLIFLGFWIDKGTP 54 (160)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC-----ceeEeccccc---------------------cCCCCCCEEEEEcCccCCCC
Confidence 589999999999999999999953 4566666542 12789999999999999999
Q ss_pred HHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChH--HHHHHHHHHHHHcCcEEecCCCcCCC---Cccccc-cc-
Q 028841 86 AAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQE--TTALTAITQLVHHGMIFVPIGYTFGA---GMFEME-KV- 158 (203)
Q Consensus 86 ~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~--~~~~~l~~~l~~~g~~~v~~~~~~~~---~~~~~~-~~- 158 (203)
++.++.||.+ ++||++++|+|+|....... ..+.++ ..+...+..++|..++.|. .+++.. ..
T Consensus 55 d~~~~~fl~~---------l~~KkV~lF~T~G~~~~s~~~~~~~~~~-~~~~~~~~~~lg~f~CqGk~~~~~~e~~~~~~ 124 (160)
T PF12641_consen 55 DKDMKEFLKK---------LKGKKVALFGTAGAGPDSEYAKKILKNV-EALLPKGNEILGTFMCQGKMDPKVIEKYKKML 124 (160)
T ss_pred CHHHHHHHHH---------ccCCeEEEEEecCCCCchHHHHHHHHHH-HHhhccCCeecceEEeCCcCCHHHHHHHHhcc
Confidence 9999999997 46899999999986543321 111221 2233346788887766663 111110 00
Q ss_pred cCCCCCccce--ecC--CCCCCCCHHHHHHHHHHHH
Q 028841 159 KGGSPYGAGT--FAG--DGSRQPTELELEQAFHQGK 190 (203)
Q Consensus 159 ~~~~~~g~~~--~~~--~~~~~~~~~~~~~~~~~g~ 190 (203)
.......... ... ++..|||++|++.++++.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~a~~HPde~Dl~~a~~~~k 160 (160)
T PF12641_consen 125 PKNPPHAMTPERLARFDEAASHPDEEDLQNAKAFFK 160 (160)
T ss_pred CCCCCCcccHHHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 0000000000 000 2446999999999998863
No 37
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=99.71 E-value=2.6e-16 Score=119.60 Aligned_cols=129 Identities=25% Similarity=0.314 Sum_probs=96.2
Q ss_pred eEEEEEcCC--cchHHHHHHHHHHhcccCCC-ceEEEEEcCCCCc-HHHhccCCCCCCCCCCC---CChhhhhhcCeeEE
Q 028841 4 KVYIVYYSM--YGHVEKLAEEIKKGASSVEG-VEAKLWQVPETLP-EEVLGKMSAPPKSDVPI---ITPNELAEADGFVF 76 (203)
Q Consensus 4 kilii~~S~--~g~T~~la~~i~~~~~~~~g-~~v~~~~l~~~~~-~~~~~~~~~~~~~d~~~---~~~~~l~~aD~iii 76 (203)
||++|++|. .+.|+.+++.+.+.+.. .+ .++..+++ +.+. ++..+. ++.|. ...+.+.+||++||
T Consensus 2 kil~i~GS~r~~S~~~~la~~~~~~l~~-~~~~~~~~~~~-~lP~~~~d~~~------~~~p~~v~~~~~~i~~aD~li~ 73 (184)
T COG0431 2 KILIISGSLRRGSFNRALAEAAAKLLPA-GGEVEVEFDDL-DLPLYNEDLEA------DGLPPAVQALREAIAAADGLII 73 (184)
T ss_pred eEEEEeccCcccchHHHHHHHHHHhhcc-cCceEEEeccc-ccCCCCcchhh------ccCCHHHHHHHHHHHhCCEEEE
Confidence 899999995 46899999999999988 44 33333343 2221 111110 11222 13678999999999
Q ss_pred eccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCC
Q 028841 77 GFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 77 gsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~ 145 (203)
+||+|++++|+.+|+.||++.+. .+.+|++++++++++..++... ...|+..+...++.+++.+
T Consensus 74 ~tPeYn~s~pg~lKnaiD~l~~~----~~~~Kpv~~~~~s~g~~~~~~a-~~~Lr~vl~~~~~~~~~~~ 137 (184)
T COG0431 74 ATPEYNGSYPGALKNAIDWLSRE----ALGGKPVLLLGTSGGGAGGLRA-QNQLRPVLSFLGARVIPAG 137 (184)
T ss_pred ECCccCCCCCHHHHHHHHhCCHh----HhCCCcEEEEecCCCchhHHHH-HHHHHHHHHhcCceecccc
Confidence 99999999999999999999754 5899999999998877666543 5667778888999999875
No 38
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=99.71 E-value=5.8e-17 Score=122.35 Aligned_cols=87 Identities=23% Similarity=0.378 Sum_probs=76.6
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFG 83 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~ 83 (203)
|++|+|+|.+|||+++|+.|++.+.. |.+++++++.+.. ...+.+||.||||+|+|+|
T Consensus 2 kilIvY~S~~G~T~~iA~~Ia~~l~~--g~~v~~~~~~~~~--------------------~~~l~~yD~vIlGspi~~G 59 (177)
T PRK11104 2 KTLILYSSRDGQTRKIASYIASELKE--GIQCDVVNLHRIE--------------------EPDLSDYDRVVIGASIRYG 59 (177)
T ss_pred cEEEEEECCCChHHHHHHHHHHHhCC--CCeEEEEEhhhcC--------------------ccCHHHCCEEEEECccccC
Confidence 89999999999999999999999974 7889999887642 2368899999999999999
Q ss_pred ccHHHHHHHHHHhcccccccCCCCCceEEEEecC
Q 028841 84 MMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTG 117 (203)
Q Consensus 84 ~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g 117 (203)
.+++.++.|+++.. ..+++|++++|+++.
T Consensus 60 ~~~~~~~~fl~~~~-----~~l~~K~v~~F~v~l 88 (177)
T PRK11104 60 HFHSALYKFVKKHA-----TQLNQMPSAFFSVNL 88 (177)
T ss_pred CcCHHHHHHHHHHH-----HHhCCCeEEEEEech
Confidence 99999999998864 258999999999874
No 39
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=99.70 E-value=3.5e-16 Score=118.06 Aligned_cols=133 Identities=19% Similarity=0.127 Sum_probs=86.4
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecccc
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR 81 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y 81 (203)
|+|+|||++|++......-+.+.+.+.+ ..++++.||....|+. ..|. ....+.+.+||.|||.+|+|
T Consensus 5 ~~kiLiI~aHP~~~~S~~n~~l~~~~~~--~~~v~~~DL~~~~p~~---------~~d~-~~eq~~l~~aD~iV~~fPl~ 72 (184)
T PRK04930 5 PPKVLLLYAHPESQDSVANRVLLKPAQQ--LEHVTVHDLYAHYPDF---------FIDI-PHEQALLREHDVIVFQHPLY 72 (184)
T ss_pred CCEEEEEECCCCcccCHHHHHHHHHHHc--CCceEEEECcccCCCC---------CCCH-HHHHHHHHhCCEEEEEcCcc
Confidence 3599999999864322233334444433 3479999998864311 0011 11256899999999999999
Q ss_pred CCccHHHHHHHHHHhccc-cc----ccCCCCCceEEEEecCCCCC-----ChH-HHHHHHHH----HHHHcCcEEecCCC
Q 028841 82 FGMMAAQFKAFLDATGGL-WR----TQQLAGKPAGMFYSTGSQGG-----GQE-TTALTAIT----QLVHHGMIFVPIGY 146 (203)
Q Consensus 82 ~~~~~~~~k~~ld~~~~~-~~----~~~l~gK~~~~~~t~g~~~~-----~~~-~~~~~l~~----~l~~~g~~~v~~~~ 146 (203)
|+++|+.+|.|+|++... |. ...++||++.+++|.|++.. +.. .+++++.. .+..+||.+++...
T Consensus 73 w~~~Pa~LK~wiD~V~~~g~ay~~~g~~l~gK~~~~~~T~G~~~~~y~~~g~~~~~~~~ll~p~~~~~~~~Gm~~~~~~~ 152 (184)
T PRK04930 73 TYSCPALLKEWLDRVLSRGFASGPGGNALAGKYWRSVITTGEPESAYRYDGYNRYPMSDILRPFELTAAMCRMHWLSPII 152 (184)
T ss_pred ccCCcHHHHHHHHHHHhcCcccCCCCCccCCCEEEEEEECCCChHHhCccCcCCCCHHHHHHHHHHHHHHcCCeEcCcEE
Confidence 999999999999998532 21 13589999999988766321 111 12333333 34467999987654
No 40
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=99.67 E-value=9.9e-16 Score=111.89 Aligned_cols=90 Identities=26% Similarity=0.442 Sum_probs=73.3
Q ss_pred EEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCCcc
Q 028841 6 YIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMM 85 (203)
Q Consensus 6 lii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~~~ 85 (203)
||+|.|.+|||+++|+.|++.+.+ . ++.+++.+... ...++.++|.||||+|+|.+.+
T Consensus 1 LIvY~S~~G~Tk~~A~~ia~~l~~-~---~~~v~~~~~~~------------------~~~~~~~yD~vi~gspiy~g~~ 58 (143)
T PF12724_consen 1 LIVYFSKTGNTKKIAEWIAEKLGE-E---GELVDLEKVEE------------------DEPDLSDYDAVIFGSPIYAGRI 58 (143)
T ss_pred CEEEECCCchHHHHHHHHHHHHhh-h---ccEEEHHhhhh------------------cccccccCCEEEEEEEEECCcC
Confidence 689999999999999999999986 3 44555544210 0247899999999999999999
Q ss_pred HHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCC
Q 028841 86 AAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGG 122 (203)
Q Consensus 86 ~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~ 122 (203)
++.++.|+++... .+++|++++|+++++....
T Consensus 59 ~~~~~~fi~~~~~-----~l~~k~v~~f~~~~~~~~~ 90 (143)
T PF12724_consen 59 PGEMREFIKKNKD-----NLKNKKVALFSVGGSSPES 90 (143)
T ss_pred CHHHHHHHHHHHH-----HHcCCcEEEEEEeCCCCch
Confidence 9999999998742 4899999999998875443
No 41
>PRK08105 flavodoxin; Provisional
Probab=99.63 E-value=3.8e-15 Score=109.36 Aligned_cols=121 Identities=17% Similarity=0.084 Sum_probs=95.6
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecccc
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR 81 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y 81 (203)
|+|++|+|+|.+|||+.+|+.|++.+.+ .|+++.+.++.+.. .....++|.|||++|+|
T Consensus 1 m~~i~I~YgS~tGnte~~A~~l~~~l~~-~g~~~~~~~~~~~~--------------------~~~~~~~~~vi~~~sT~ 59 (149)
T PRK08105 1 MAKVGIFVGTVYGNALLVAEEAEAILTA-QGHEVTLFEDPELS--------------------DWQPYQDELVLVVTSTT 59 (149)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHh-CCCceEEechhhCC--------------------chhcccCCeEEEEECCC
Confidence 5699999999999999999999999988 79999988875431 11234579999999999
Q ss_pred -CCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCC
Q 028841 82 -FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 82 -~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~ 145 (203)
.|.+|..++.|++.+... ...+.|+++++|+.++............+.+.|...|+..+...
T Consensus 60 G~Ge~p~~~~~f~~~l~~~--~~~l~~~~~avfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~ 122 (149)
T PRK08105 60 GQGDLPDSIVPLFQALKDT--AGYQPNLRYGVIALGDSSYDNFCGAGKQFDALLQEQGAKRVGER 122 (149)
T ss_pred CCCCCChhHHHHHHHHHhc--CcccCCCEEEEEeeecCCHHHHHHHHHHHHHHHHHCCCeEeecc
Confidence 688999999999988632 12689999999999876442233345667788888999988754
No 42
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=99.59 E-value=1.1e-14 Score=106.25 Aligned_cols=120 Identities=31% Similarity=0.328 Sum_probs=91.2
Q ss_pred EEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccC-Ccc
Q 028841 7 IVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRF-GMM 85 (203)
Q Consensus 7 ii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~-~~~ 85 (203)
|+|+|++|||+++|+.|++++++ .|++++++++.+.+.. ...+..++.+||++|+|+ |.+
T Consensus 1 I~Y~S~tG~te~~A~~ia~~l~~-~g~~~~~~~~~~~~~~------------------~~~~~~~~~~i~~~sT~~~g~~ 61 (143)
T PF00258_consen 1 IVYGSMTGNTEKMAEAIAEGLRE-RGVEVRVVDLDDFDDS------------------PSDLSEYDLLIFGVSTYGEGEP 61 (143)
T ss_dssp EEEETSSSHHHHHHHHHHHHHHH-TTSEEEEEEGGGSCHH------------------HHHHCTTSEEEEEEEEETTTEE
T ss_pred CEEECCchhHHHHHHHHHHHHHH-cCCceeeechhhhhhh------------------hhhhhhhceeeEeecccCCCcc
Confidence 78999999999999999999998 7999999999887421 237889999999999998 556
Q ss_pred HHHHHHHHHHhcccc----cccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCC
Q 028841 86 AAQFKAFLDATGGLW----RTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 86 ~~~~k~~ld~~~~~~----~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~ 145 (203)
|...+.++..+...+ ....++++++++|+.+++.++..-.....+.+.|...|+.++...
T Consensus 62 p~~~~~~~~~~~~~~~~~~~~~~l~~~~~avfg~Gd~~~~~f~~~~k~l~~~l~~~G~~~~~~~ 125 (143)
T PF00258_consen 62 PDNAKEFFEELLELKGKELSKPDLKGKKYAVFGLGDSGYGGFCAAAKKLDERLEELGAKRVGPL 125 (143)
T ss_dssp SGGGHHHHHHHHHHHHHGGGGSHCTTCEEEEEEEEETTSSTTTHHHHHHHHHHHHTTEEEESSS
T ss_pred hhhhhhhhhhccccccccccccccccceeeeeecCCccchhhhhHHHHHHHHHHHCCCEEEECc
Confidence 654443333322111 123589999999998877665533345668889999999998764
No 43
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=99.58 E-value=6.7e-14 Score=105.33 Aligned_cols=141 Identities=21% Similarity=0.113 Sum_probs=101.2
Q ss_pred CceEEEEEcCCc---chHHHHHHHHHHhcccC-CCceEEEEEcCCCCcHHH----hccCCCC--CC--C------CCCCC
Q 028841 2 ATKVYIVYYSMY---GHVEKLAEEIKKGASSV-EGVEAKLWQVPETLPEEV----LGKMSAP--PK--S------DVPII 63 (203)
Q Consensus 2 m~kilii~~S~~---g~T~~la~~i~~~~~~~-~g~~v~~~~l~~~~~~~~----~~~~~~~--~~--~------d~~~~ 63 (203)
|+|||+|-.|+. +.|.++++++.+..++. .+.++...||.+.+++.+ +...+.+ .. + +..+.
T Consensus 1 MskvL~I~as~~~~~S~S~~l~~~Fi~~yk~~~P~dev~~~DL~~e~iP~ld~~~~~a~~~~~~~~~t~~~~~~~~~sd~ 80 (202)
T COG1182 1 MSKVLVIKASPLGENSVSRKLADEFIETYKEKHPNDEVIERDLAAEPIPHLDEELLAAWFKPQAGEGTAEEKEALARSDK 80 (202)
T ss_pred CceEEEEecCCCccccHHHHHHHHHHHHHHHhCCCCeEEEeecccCCCcccCHHHHhcccCCccCCCCHHHHHHHHHHHH
Confidence 569999999974 57999999999999874 566899999988765332 2222111 11 0 11112
Q ss_pred ChhhhhhcCeeEEeccccCCccHHHHHHHHHHhcccc---------cccCCCCCceEEEEecCCCCCC----hHHHHHHH
Q 028841 64 TPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLW---------RTQQLAGKPAGMFYSTGSQGGG----QETTALTA 130 (203)
Q Consensus 64 ~~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~---------~~~~l~gK~~~~~~t~g~~~~~----~~~~~~~l 130 (203)
..+.+..||.+||++|.||.++|+.+|+|||++.+.- ..+.+.||++.++.+.|+.... .+....+|
T Consensus 81 l~~ef~aAD~vVi~~PM~Nf~iPa~LK~yiD~i~~aGkTFkYte~Gp~GLl~gKKv~~l~srGG~y~~~p~~~~~~~~YL 160 (202)
T COG1182 81 LLEEFLAADKVVIAAPMYNFNIPAQLKAYIDHIAVAGKTFKYTENGPVGLLTGKKVLILTSRGGIYSEGPASMDHGEPYL 160 (202)
T ss_pred HHHHHHhcCeEEEEecccccCCCHHHHHHHHHHhcCCceEEeccCCcccccCCceEEEEECCCCcCCCCccchhhhHHHH
Confidence 3578999999999999999999999999999986431 1246789999999998875543 34456677
Q ss_pred HHHHHHcCcEEe
Q 028841 131 ITQLVHHGMIFV 142 (203)
Q Consensus 131 ~~~l~~~g~~~v 142 (203)
+..|...|+.-+
T Consensus 161 r~ilgF~Gitd~ 172 (202)
T COG1182 161 RTILGFLGITDV 172 (202)
T ss_pred HHHhhhcCCCcc
Confidence 777777666543
No 44
>PRK00871 glutathione-regulated potassium-efflux system ancillary protein KefF; Provisional
Probab=99.57 E-value=2.5e-14 Score=107.34 Aligned_cols=129 Identities=18% Similarity=0.267 Sum_probs=81.9
Q ss_pred EEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCCc
Q 028841 5 VYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGM 84 (203)
Q Consensus 5 ilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~~ 84 (203)
||||+++++......-+.+.+.+.+ . .+|+++||.+..+... .|. ....+.+.+||.|||.+|+||++
T Consensus 2 iLvi~aHP~~~~S~~n~al~~~~~~-~-~~v~v~dL~~~~p~~~---------~dv-~~eq~~l~~aD~iV~~fP~~w~~ 69 (176)
T PRK00871 2 ILIIYAHPYPHHSHANKRMLEQART-L-EGVEIRSLYQLYPDFN---------IDI-AAEQEALSRADLIVWQHPMQWYS 69 (176)
T ss_pred EEEEEcCCCCccChHHHHHHHHHHh-c-CCeEEEEChhhcCCcc---------hhH-HHHHHHHHhCCEEEEEcChhhcc
Confidence 9999999864322233344443333 1 2688999887654210 011 11267899999999999999999
Q ss_pred cHHHHHHHHHHhcc-ccc----ccCCCCCceEEEEecCCCC-----CCh---HHHHHHHHHHHHHcCcEEecCC
Q 028841 85 MAAQFKAFLDATGG-LWR----TQQLAGKPAGMFYSTGSQG-----GGQ---ETTALTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 85 ~~~~~k~~ld~~~~-~~~----~~~l~gK~~~~~~t~g~~~-----~~~---~~~~~~l~~~l~~~g~~~v~~~ 145 (203)
+|+.+|.|+|++.. .|. ...++||++.++.|.|+.. ++. +.-+.-+...+..+||.+++..
T Consensus 70 ~Pa~lK~wiD~V~~~g~ay~~~g~~l~gk~~~~~~t~G~~~~~y~~~g~~~~~~ll~pl~~~~~~~G~~~l~~~ 143 (176)
T PRK00871 70 IPPLLKLWIDKVLSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATALYCGLNWLPPF 143 (176)
T ss_pred ccHHHHHHHHHHhhCCccccCCCCCcCCCEEEEEEeCCCCHHHHCCCCcCCchHHHHHHHHHHHHcCCeEcceE
Confidence 99999999999742 221 1358999998887776631 121 1112223334456788887654
No 45
>COG2249 MdaB Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]
Probab=99.57 E-value=1.1e-14 Score=110.50 Aligned_cols=114 Identities=23% Similarity=0.220 Sum_probs=84.4
Q ss_pred eEEEEEcCCc-chHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccC
Q 028841 4 KVYIVYYSMY-GHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRF 82 (203)
Q Consensus 4 kilii~~S~~-g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~ 82 (203)
||||||+.+. +.+..+++.+.+.+.+ .|.++...|+.....+............|+ ....+++.+||.||+..|.||
T Consensus 2 kiLii~aHP~~sf~~~~~~~~~~~~n~-~~~~v~~~dl~~~~fd~~~~~~d~~~~~Dv-~~E~e~l~~AD~ivlqfPlwW 79 (189)
T COG2249 2 KILIIYAHPNESFTHALSDAALERLNE-AGHEVALKDLYALGFDPYLTYPDGEFPIDV-KAEQEKLLWADVIVLQFPLWW 79 (189)
T ss_pred cEEEEEeCchhhhhHHHHHHHHHHHHH-cchHHHhhhhhhhcCCceeecCccCCCCCH-HHHHHHHHhcceEEEEcCchh
Confidence 8999999997 8889999999999998 788888887766532211110000001122 113789999999999999999
Q ss_pred CccHHHHHHHHHHhccc-cc---c-----cCCCCCceEEEEecCCC
Q 028841 83 GMMAAQFKAFLDATGGL-WR---T-----QQLAGKPAGMFYSTGSQ 119 (203)
Q Consensus 83 ~~~~~~~k~~ld~~~~~-~~---~-----~~l~gK~~~~~~t~g~~ 119 (203)
+++|+.+|.||||+... |. . +.+.||++.+++|.|++
T Consensus 80 ~~~PaiLKg~iDrV~~~Gfay~~~~~~~~~~L~gK~~~~~~T~G~~ 125 (189)
T COG2249 80 YSMPALLKGWIDRVFTPGFAYGAGGYGSGGLLQGKKAMLVVTTGAP 125 (189)
T ss_pred ccCcHHHHHHHHHHhcCCcccccCCcccccccCCcEEEEEEecCCC
Confidence 99999999999997422 21 1 46899999999998764
No 46
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=99.56 E-value=1.1e-14 Score=104.90 Aligned_cols=107 Identities=21% Similarity=0.320 Sum_probs=86.4
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFG 83 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~ 83 (203)
|+||+|+|++|+|+++|+.|+..+++ .|.+|++.|+.... ..++.++|.||||+|+|.+
T Consensus 2 k~LIlYstr~GqT~kIA~~iA~~L~e-~g~qvdi~dl~~~~--------------------~~~l~~ydavVIgAsI~~~ 60 (175)
T COG4635 2 KTLILYSTRDGQTRKIAEYIASHLRE-SGIQVDIQDLHAVE--------------------EPALEDYDAVVIGASIRYG 60 (175)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHhhh-cCCeeeeeehhhhh--------------------ccChhhCceEEEecchhhh
Confidence 99999999999999999999999999 79999999997652 1268999999999999999
Q ss_pred ccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCCh--HHHHHHHHHHHHH
Q 028841 84 MMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQ--ETTALTAITQLVH 136 (203)
Q Consensus 84 ~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~--~~~~~~l~~~l~~ 136 (203)
.....+++|+.+... .|..||.++|++.-...... ..+-.++.+.|..
T Consensus 61 h~~~~~~~Fv~k~~e-----~L~~kP~A~f~vnl~a~k~k~~~e~~~yv~kfl~~ 110 (175)
T COG4635 61 HFHEAVQSFVKKHAE-----ALSTKPSAFFSVNLTARKEKRTPETNSYVRKFLMK 110 (175)
T ss_pred hhHHHHHHHHHHHHH-----HHhcCCceEEEeehhhcccccCchHHHHHHHHHhc
Confidence 999999999998753 58999999999863322221 1122345566654
No 47
>PRK05723 flavodoxin; Provisional
Probab=99.49 E-value=1.5e-12 Score=95.64 Aligned_cols=118 Identities=18% Similarity=0.097 Sum_probs=89.9
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhc--CeeEEecccc
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEA--DGFVFGFPTR 81 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~a--D~iiigsP~y 81 (203)
||.|+|+|.+|||+.+|+.+++.+.+ .|+++.++.. .. ..++.++ |.|||++++|
T Consensus 2 ~i~I~ygS~tG~ae~~A~~la~~l~~-~g~~~~~~~~--~~--------------------~~~~~~~~~~~li~~~sT~ 58 (151)
T PRK05723 2 KVAILSGSVYGTAEEVARHAESLLKA-AGFEAWHNPR--AS--------------------LQDLQAFAPEALLAVTSTT 58 (151)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHH-CCCceeecCc--CC--------------------HhHHHhCCCCeEEEEECCC
Confidence 89999999999999999999999987 6877765432 11 1234444 8999999999
Q ss_pred C-CccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCC-ChHHHHHHHHHHHHHcCcEEecCC
Q 028841 82 F-GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGG-GQETTALTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 82 ~-~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~-~~~~~~~~l~~~l~~~g~~~v~~~ 145 (203)
. |.+|.....|++++... ....++++++++|+.+....+ ..-.....+.+.|...|...+...
T Consensus 59 G~Ge~Pd~~~~f~~~L~~~-~~~~l~~~~~aVfGLGDs~Y~~~Fc~a~~~ld~~L~~lGA~rv~~~ 123 (151)
T PRK05723 59 GMGELPDNLMPLYSAIRDQ-LPAAWRGLPGAVIALGDSSYGDTFCGGGEQMRELFAELGVREVQPM 123 (151)
T ss_pred CCCCCchhHHHHHHHHHhc-CccCCCCCEEEEEeEeCCcchHHHhHHHHHHHHHHHHCCCcEeecc
Confidence 7 78999999999988532 012589999999999876542 233456678888888888887653
No 48
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=99.43 E-value=2.6e-12 Score=113.34 Aligned_cols=121 Identities=11% Similarity=0.032 Sum_probs=99.2
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecccc
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR 81 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y 81 (203)
|++++|+|+|.+||++.+|+.+++.+.+ .|++++++++.+.. .+.+.+.+.+||++++|
T Consensus 61 ~~~v~IlygSqTGnae~lA~~la~~l~~-~g~~~~v~~~~d~~--------------------~~~L~~~~~vl~v~ST~ 119 (600)
T PRK10953 61 MPGITLISASQTGNARRVAEQLRDDLLA-AKLNVNLVNAGDYK--------------------FKQIAQEKLLIVVTSTQ 119 (600)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHh-CCCCcEEechHhCC--------------------HhHhccCCeEEEEECCC
Confidence 5689999999999999999999999988 79999998887653 35688899999999999
Q ss_pred -CCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecC
Q 028841 82 -FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPI 144 (203)
Q Consensus 82 -~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~ 144 (203)
.|.+|...+.|.+.+... ....+.|+++++|+.+++...........+.+.|...|+..+..
T Consensus 120 G~Ge~Pdna~~F~~~L~~~-~~~~L~~~~faVfGLGDssY~~Fc~~~k~ld~rL~~lGA~rl~~ 182 (600)
T PRK10953 120 GEGEPPEEAVALHKFLFSK-KAPKLENTAFAVFGLGDTSYEFFCQAGKDFDSKLAELGAERLLD 182 (600)
T ss_pred CCCCCChhHHHHHHHHhhC-cCcCCCCCEEEEEccCccCHHHHHHHHHHHHHHHHHCCCeEeec
Confidence 699999999999988432 12358999999999988765433344566778888888888754
No 49
>KOG4530 consensus Predicted flavoprotein [General function prediction only]
Probab=99.41 E-value=9.8e-13 Score=94.56 Aligned_cols=131 Identities=22% Similarity=0.168 Sum_probs=86.4
Q ss_pred eEEEEEcCCc--chHHHHHHHHHHhccc-CCCceEEEEEcCCCCcHHH-hccCCCCCCCCC-C---CCChhhhhhcCeeE
Q 028841 4 KVYIVYYSMY--GHVEKLAEEIKKGASS-VEGVEAKLWQVPETLPEEV-LGKMSAPPKSDV-P---IITPNELAEADGFV 75 (203)
Q Consensus 4 kilii~~S~~--g~T~~la~~i~~~~~~-~~g~~v~~~~l~~~~~~~~-~~~~~~~~~~d~-~---~~~~~~l~~aD~ii 75 (203)
||++|.+|-. ...-.+|.++.+--++ ..|.+++.+|+.+.+.-.. .+...-.--|.+ + +.+..++..+|.||
T Consensus 12 kv~~imGSvR~kr~cp~ia~~v~e~~ke~~~~l~ie~vDls~lPL~~~D~e~~pi~~vd~y~~~~t~aw~~ki~~aD~iv 91 (199)
T KOG4530|consen 12 KVAAIMGSVRKKRFCPGIARAVIELTKESVPGLQIEYVDLSPLPLINTDLEVNPIKSVDEYYPPVTEAWRQKILEADSIV 91 (199)
T ss_pred HHHHHhhhhhhcccCHHHHHHHHHhhhccCCCCceEEEeccCCccccCCcccCccccccccCcHHHHHHHHHHhhcceEE
Confidence 7889999943 3344566666655544 3688999999988643110 000000001111 1 12356899999999
Q ss_pred EeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEe
Q 028841 76 FGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFV 142 (203)
Q Consensus 76 igsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v 142 (203)
|.||.||+++|+.+||.|||+.. .|.|||+.+++. |+.||+.. ..+|++......|++.
T Consensus 92 FvtPqYN~gypA~LKNAlD~lyh-----eW~gKPalivSy-GGhGGg~c--~~qL~~v~~fLkm~va 150 (199)
T KOG4530|consen 92 FVTPQYNFGYPAPLKNALDWLYH-----EWAGKPALIVSY-GGHGGGRC--QYQLRQVGVFLKMHVA 150 (199)
T ss_pred EecccccCCCchHHHHHHHHhhh-----hhcCCceEEEEe-cCCCCchH--HHHHHHHHhhheeeee
Confidence 99999999999999999999975 488999776654 55555532 3456666666677754
No 50
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=99.36 E-value=1.5e-11 Score=108.80 Aligned_cols=120 Identities=15% Similarity=0.073 Sum_probs=97.1
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecccc-
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR- 81 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y- 81 (203)
++|+|+|+|.+|||+.+|+.+++.+.+ .|+++.+.++.+.. .+++.+++.+||++++|
T Consensus 59 ~~i~IlygSqTGnae~~A~~l~~~l~~-~g~~~~v~~~~d~~--------------------~~~l~~~~~li~v~ST~G 117 (597)
T TIGR01931 59 KRVTILYGSQTGNARRLAKRLAEKLEA-AGFSVRLSSADDYK--------------------FKQLKKERLLLLVISTQG 117 (597)
T ss_pred CeEEEEEECCchHHHHHHHHHHHHHHh-CCCccEEechHHCC--------------------HhhcccCceEEEEeCCCC
Confidence 579999999999999999999999988 79999999887763 34678889999999999
Q ss_pred CCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecC
Q 028841 82 FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPI 144 (203)
Q Consensus 82 ~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~ 144 (203)
.|.+|...+.|.+.+... ....++|+++++|+.+++...........+.+.|...|+..+..
T Consensus 118 eGe~Pdna~~F~~~L~~~-~~~~L~~~~~aVfGLGDssY~~fc~~~k~~d~~L~~lGa~ri~~ 179 (597)
T TIGR01931 118 EGEPPEEAISFHKFLHSK-KAPKLENLRYSVLGLGDSSYEFFCQTGKDFDKRLEELGGKRLLP 179 (597)
T ss_pred CCcCCHHHHHHHHHHHhC-CCcccCCCeEEEEeCCcCCHHHHhHHHHHHHHHHHHcCCeEeec
Confidence 589999999999987432 12358999999999987755333334556778888888888754
No 51
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=98.99 E-value=9e-09 Score=74.01 Aligned_cols=121 Identities=17% Similarity=0.182 Sum_probs=76.9
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFG 83 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~ 83 (203)
.+.|+|+|.+|||+++++.+... .+.+++.+. +.+...+-+|+.+|+|..
T Consensus 2 ~~~I~Y~S~TGNt~~f~~kl~~~--------~~~i~i~~~----------------------~~~~~~~~~~lv~PTy~~ 51 (134)
T PRK03600 2 MMLVYFSSKTGNTHRFVQKLGLP--------ATRIPINER----------------------ERLEVDEPYILITPTYGG 51 (134)
T ss_pred cEEEEEECCChhHHHHHHHhCCc--------ceEEecCCC----------------------ccccCCCCEEEEEeccCC
Confidence 48899999999999887766322 234454321 124456889999999984
Q ss_pred -----ccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHH-cCcEEecCCCcCCCCcccccc
Q 028841 84 -----MMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVH-HGMIFVPIGYTFGAGMFEMEK 157 (203)
Q Consensus 84 -----~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~-~g~~~v~~~~~~~~~~~~~~~ 157 (203)
.+|..++.||+... .....+++++++....+.. .....+.+.. ++ ++..+ +
T Consensus 52 g~~~G~vP~~v~~Fl~~~~-------n~~~~~gV~gsGnr~~g~~---f~~a~~~i~~~~~---vp~l~----------k 108 (134)
T PRK03600 52 GGTAGAVPKQVIRFLNDEH-------NRKLLRGVIASGNRNFGDA---FALAGDVISAKCQ---VPLLY----------R 108 (134)
T ss_pred CCcCCcccHHHHHHHhccc-------cCCcEEEEEEecCchHHHH---HHHHHHHHHHHhC---CCeEE----------E
Confidence 89999999998742 2345666666654432221 1123344433 33 11111 1
Q ss_pred ccCCCCCccceecCCCCCCCCHHHHHHHHHHHHHH
Q 028841 158 VKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHI 192 (203)
Q Consensus 158 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l 192 (203)
+. ..++++|.+++.++.+++
T Consensus 109 ~E---------------l~gt~~Dv~~~~~~~~~~ 128 (134)
T PRK03600 109 FE---------------LSGTNEDVENVRKGVEEF 128 (134)
T ss_pred Ee---------------cCCCHHHHHHHHHHHHHH
Confidence 11 377889999999998888
No 52
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=98.74 E-value=1.4e-07 Score=66.78 Aligned_cols=75 Identities=21% Similarity=0.173 Sum_probs=52.9
Q ss_pred EEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccC-Ccc
Q 028841 7 IVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRF-GMM 85 (203)
Q Consensus 7 ii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~-~~~ 85 (203)
|+|.|.+|||+++++. + |.++..+.+.+.+ ...+ ++|.|++ |++|. |.+
T Consensus 1 IvY~S~TGNte~fv~~----l----g~~~~~i~~~~~d--------------------~~~~-~~~~vli-TyT~G~G~v 50 (125)
T TIGR00333 1 IYFSSKTGNVQRFVEK----L----GFQHIRIPVDETD--------------------DIHV-DQEFVLI-TYTGGFGAV 50 (125)
T ss_pred CEEEcccccHHHHHHH----c----CCCcEEeecCCcc--------------------hhhc-CCCEEEE-ecCCCCCcC
Confidence 6899999999999433 2 3444444444321 1234 8899988 99996 669
Q ss_pred HHHHHHHHHHhcccccccCCCCCceEEEEecCCCC
Q 028841 86 AAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQG 120 (203)
Q Consensus 86 ~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~ 120 (203)
|.++..|++... ++..++++++....
T Consensus 51 P~~~~~Fle~~~---------n~~~gV~gSGn~n~ 76 (125)
T TIGR00333 51 PKQTISFLNKKH---------NLLRGVAASGNKVW 76 (125)
T ss_pred CHHHHHHHHhhh---------hcEEEEEEcCCCch
Confidence 999999999763 27888888765543
No 53
>PRK02551 flavoprotein NrdI; Provisional
Probab=98.55 E-value=1.2e-06 Score=64.36 Aligned_cols=139 Identities=16% Similarity=0.205 Sum_probs=81.3
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccC-CCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSV-EGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~-~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
|+++.|+|.|.+|||++.++.+...+.+. .+..+..+++.+..++ + .+.+..-.-.|+.+|+
T Consensus 1 ~~~~~I~Y~S~TGNt~rFv~kL~~~~~~~~~~~~~~~i~~~~~i~~------------~-----~~~~~~~~p~vli~pT 63 (154)
T PRK02551 1 MKTITLVYISLSGNTRSFVKRLSDYLATQHKDIEVNPINIKDLIHE------------T-----TDFFPETEPFVAFLPT 63 (154)
T ss_pred CCceEEEEEeCChhHHHHHHHHhcHHhhccccccceecccccccCc------------c-----ccccccCCCEEEEEee
Confidence 47899999999999999999987654320 0333444554332100 0 0123444778899999
Q ss_pred c-CCc----------cHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHH-HHcCcEEecCCCcC
Q 028841 81 R-FGM----------MAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQL-VHHGMIFVPIGYTF 148 (203)
Q Consensus 81 y-~~~----------~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l-~~~g~~~v~~~~~~ 148 (203)
| .+. +|.++..|+..- ..+....++|+++....+.. . .. ..+.+ .+++..++-..
T Consensus 64 Y~~gG~~~~~~~~~~vp~~v~dFL~~~-------~N~~~~~gVigsGNrNfg~~-F-~~-aa~~ia~~~~vP~L~~f--- 130 (154)
T PRK02551 64 YLEGGNGIDNGDVEILTTPLGDFIAYH-------DNAKRCLGIIGSGNRNFNNQ-Y-CL-TAKQYAKRFGFPMLADF--- 130 (154)
T ss_pred ecCCCCCcccCccccchHHHHHHHcch-------hhhhheEEEEeecccHHHHH-H-HH-HHHHHHHHcCCCEEEEe---
Confidence 9 554 788888888543 23455677777754333322 1 11 22333 34555554321
Q ss_pred CCCccccccccCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 028841 149 GAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGI 195 (203)
Q Consensus 149 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 195 (203)
++ +=+++|.+++++..+++++.
T Consensus 131 --------El-----------------~GT~~Dv~~v~~~~~~~~~~ 152 (154)
T PRK02551 131 --------EL-----------------RGTPSDIERIAAIIAELYAA 152 (154)
T ss_pred --------ec-----------------cCCHHHHHHHHHHHHHHHHh
Confidence 12 23578888888877766553
No 54
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=98.41 E-value=1.8e-06 Score=73.00 Aligned_cols=118 Identities=19% Similarity=0.131 Sum_probs=90.2
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecccc-C
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR-F 82 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y-~ 82 (203)
+|+|+|+|.||+..-+|+.|...+.. .|..+.+..+.+++ .++|.+.+.|||...+- .
T Consensus 2 ~i~ILYGSqTGtA~dvAe~l~Re~~r-~~~~~~V~s~Deyd--------------------~~~ll~~~~vvFVcSTTGq 60 (574)
T KOG1159|consen 2 KILILYGSQTGTAQDVAESLGREAHR-RGLQCLVMSMDEYD--------------------VEKLLDERLVVFVCSTTGQ 60 (574)
T ss_pred ceEEEeecCcccHHHHHHHHHHHHHh-ccCCceEeeccccC--------------------HhHhccCceEEEEEecCCC
Confidence 79999999999999999999999988 68888888887775 34677778877665555 6
Q ss_pred CccHHHHHHHHHHhccc-ccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEe
Q 028841 83 GMMAAQFKAFLDATGGL-WRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFV 142 (203)
Q Consensus 83 ~~~~~~~k~~ld~~~~~-~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v 142 (203)
|.+|..||+|..-+.+- .....|.+-.+++++-+++.......+...|.+.|...|+..+
T Consensus 61 Ge~P~Nmk~~WrfL~rknLps~~L~~~~~AvlGLGDSsY~KfNy~aKKL~~RL~qLGA~~~ 121 (574)
T KOG1159|consen 61 GEEPDNMKKFWRFLLRKNLPSTILQHMQFAVLGLGDSSYPKFNYAAKKLHRRLRQLGANSV 121 (574)
T ss_pred CCCCccHHHHHHHHhhccchHHHHhhhhheeeecCcccchhhhHHHHHHHHHHHHhCcccc
Confidence 99999999886554321 1123467888999998877665555556678888888887765
No 55
>COG1780 NrdI Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]
Probab=97.80 E-value=0.0003 Score=49.99 Aligned_cols=128 Identities=15% Similarity=0.123 Sum_probs=75.8
Q ss_pred EEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCCc
Q 028841 5 VYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGM 84 (203)
Q Consensus 5 ilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~~ 84 (203)
++++|.|.+|||++-++.+. +.+ .++..... .+.+.-.+-.|+.+|+|.+.
T Consensus 3 ~~v~f~S~SgNt~RFv~kL~--~~~---~~I~~~~~------------------------~~~~~v~epyvlitpTyg~G 53 (141)
T COG1780 3 LLVYFSSLSGNTHRFVEKLG--LPA---VRIPLNRE------------------------EDPIEVDEPYVLITPTYGGG 53 (141)
T ss_pred eEEEEEecCccHHHHHHHhC--CCc---eecccccc------------------------cCCccCCCCeEEEeccccCC
Confidence 67778899999999887764 211 12211111 12344557889999999855
Q ss_pred -----cHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHH-HcCcEEecCCCcCCCCccccccc
Q 028841 85 -----MAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLV-HHGMIFVPIGYTFGAGMFEMEKV 158 (203)
Q Consensus 85 -----~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~-~~g~~~v~~~~~~~~~~~~~~~~ 158 (203)
+|.++..||..- .-+.+--++++++....|..- ++ ..+.+. +++..++.-. ++
T Consensus 54 ~~~~~Vp~~vi~FLn~~-------~Nr~~~rGViaSGN~NfG~~f-~~--Ag~~iS~k~~vPlLy~F-----------EL 112 (141)
T COG1780 54 GTVGAVPKQVIRFLNNE-------HNRALCRGVIASGNRNFGDNF-AL--AGDVISAKCGVPLLYRF-----------EL 112 (141)
T ss_pred CccCccCHHHHHHhccc-------cchhheEEEEecCCccHHHHH-HH--HHHHHHHHhCCCEEEEE-----------ec
Confidence 999999998642 123344566666543333322 11 223343 4555554321 11
Q ss_pred cCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 028841 159 KGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKKL 199 (203)
Q Consensus 159 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~ 199 (203)
.-+++|.++.+....++.+...+.
T Consensus 113 -----------------~GT~~Dv~~v~~~v~~~~~~~~~~ 136 (141)
T COG1780 113 -----------------LGTAEDVAAVRKGVTEFWKRAPQN 136 (141)
T ss_pred -----------------cCCHHHHHHHHHHHHHHHHhCCcc
Confidence 336789999988888877665443
No 56
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=97.78 E-value=0.00013 Score=51.43 Aligned_cols=77 Identities=23% Similarity=0.194 Sum_probs=43.1
Q ss_pred EEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCCc--
Q 028841 7 IVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGM-- 84 (203)
Q Consensus 7 ii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~~-- 84 (203)
|+|.|.+|||++.++.+...+. ..-+.+.... +.+.-.+-.|+.+|+|...
T Consensus 1 I~Y~S~tGNt~rFv~kL~~~~~------~~~i~~~~~~---------------------~~~~~~ep~vLitpTy~~G~~ 53 (122)
T PF07972_consen 1 IYYSSLTGNTRRFVEKLGLYAP------AIRIPIREIS---------------------PDLEVDEPFVLITPTYGFGEN 53 (122)
T ss_dssp EEE--SSSHHHHHHHHH-S--S------EEEE-SSCTT---------------------STS--SS-EEEEEE-BTTTBS
T ss_pred CEEECCCcCHHHHHHHHcccch------hccccccccc---------------------ccccCCCCEEEEecccCCCCC
Confidence 6899999999999988765432 2223332211 1344557789999999854
Q ss_pred ---cHHHHHHHHHHhcccccccCCCCCceEEEEecC
Q 028841 85 ---MAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTG 117 (203)
Q Consensus 85 ---~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g 117 (203)
+|.++..||+.-. -.....++++++.
T Consensus 54 ~~~vp~~v~~FL~~~~-------N~~~l~GVigSGN 82 (122)
T PF07972_consen 54 DGGVPKQVIRFLENPD-------NRKLLRGVIGSGN 82 (122)
T ss_dssp STSS-HHHHHHHHSHH-------HGGGEEEEEEEE-
T ss_pred CCCCCHHHHHHHHHHH-------HHhhheeEEecCC
Confidence 8999999999431 1234456666654
No 57
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=97.04 E-value=0.0042 Score=55.18 Aligned_cols=118 Identities=19% Similarity=0.138 Sum_probs=83.4
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhh-hcCeeEEecccc
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELA-EADGFVFGFPTR 81 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~-~aD~iiigsP~y 81 (203)
.+++|+|+|.+||.+.+|..+++.+.. .|..+.+.++.+..+. .+. .=..+++.+...
T Consensus 48 ~~~~il~~sqtG~a~~~A~~~a~~~~~-~g~~~~~~~~~~~~~~--------------------~~~~~~~~~~i~st~g 106 (587)
T COG0369 48 KPITVLYGSQTGNAEGLAEELAKELEA-AGLQVLVASLDDYKPK--------------------DIAEERLLLFVVSTQG 106 (587)
T ss_pred CceEEEEccCCccHHHHHHHHHHHHHh-cCCceeecchhhcChh--------------------hHHhhhceEEEEcccc
Confidence 358999999999999999999999998 6888999888877542 222 135677778888
Q ss_pred CCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEe
Q 028841 82 FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFV 142 (203)
Q Consensus 82 ~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v 142 (203)
.|.+|.....|.+.+... ....|.+-..++++.+..........-..+.+.+...|...+
T Consensus 107 eGe~p~na~~f~~~l~~~-~a~~L~~l~yav~~lGDssy~~~~~~~k~~~~~l~~~Ga~~l 166 (587)
T COG0369 107 EGEPPDNAVAFHEFLKGK-KAPKLDGLRYAVLGLGDSSYEFFCQAGKDFDRRLQELGATRL 166 (587)
T ss_pred CCCCCCchHHHHHHhccc-ccccccccchhhhcCCccchhhhhccchhhHHHHHhcCcccc
Confidence 899999999999987643 223567777777776655433222222334555666555554
No 58
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=96.73 E-value=0.0082 Score=41.90 Aligned_cols=65 Identities=20% Similarity=0.110 Sum_probs=44.4
Q ss_pred CCceEEEEEcCCcc--hHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEec
Q 028841 1 MATKVYIVYYSMYG--HVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGF 78 (203)
Q Consensus 1 Mm~kilii~~S~~g--~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigs 78 (203)
||+|+++|..++.| +|.-.++.+.+..++ .|+++.+.-=...-+. + ....+++..+|.||+..
T Consensus 1 ~~mkivaVtacp~GiAht~lAAeaL~kAA~~-~G~~i~VE~qg~~g~~-----------~---~lt~~~i~~Ad~VIia~ 65 (114)
T PRK10427 1 MMAYLVAVTACVSGVAHTYMAAERLEKLCQL-EKWGVKIETQGALGTE-----------N---RLTDEDIRRADVVLLIT 65 (114)
T ss_pred CCceEEEEeeCCCcHHHHHHHHHHHHHHHHH-CCCeEEEEecCCcCcC-----------C---CCCHHHHHhCCEEEEEe
Confidence 56689999988887 677677888888877 7888765432221110 0 01257899999999986
Q ss_pred cc
Q 028841 79 PT 80 (203)
Q Consensus 79 P~ 80 (203)
..
T Consensus 66 d~ 67 (114)
T PRK10427 66 DI 67 (114)
T ss_pred cC
Confidence 54
No 59
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=96.26 E-value=0.011 Score=39.81 Aligned_cols=37 Identities=24% Similarity=0.230 Sum_probs=30.8
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEc
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQV 40 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l 40 (203)
+||+++++|.-|.+.-++..+.+.+.+ .|.++++...
T Consensus 3 ~kILvvCgsG~~TS~m~~~ki~~~l~~-~gi~~~v~~~ 39 (94)
T PRK10310 3 RKIIVACGGAVATSTMAAEEIKELCQS-HNIPVELIQC 39 (94)
T ss_pred CeEEEECCCchhHHHHHHHHHHHHHHH-CCCeEEEEEe
Confidence 389999999888777778999999998 7888877663
No 60
>PRK07053 glutamine amidotransferase; Provisional
Probab=96.24 E-value=0.019 Score=45.35 Aligned_cols=59 Identities=14% Similarity=0.143 Sum_probs=38.7
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEE-ecc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVF-GFP 79 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iii-gsP 79 (203)
||++++||-++..-+-..+++.+. + .|.++++++...... + ..++.++|+||+ |+|
T Consensus 1 ~m~~ilviqh~~~e~~g~i~~~L~----~-~g~~~~v~~~~~~~~---------------~---~~~~~~~d~lii~Ggp 57 (234)
T PRK07053 1 MMKTAVAIRHVAFEDLGSFEQVLG----A-RGYRVRYVDVGVDDL---------------E---TLDALEPDLLVVLGGP 57 (234)
T ss_pred CCceEEEEECCCCCCChHHHHHHH----H-CCCeEEEEecCCCcc---------------C---CCCccCCCEEEECCCC
Confidence 888999999998766556666654 3 477888887643211 0 123567887766 776
Q ss_pred ccC
Q 028841 80 TRF 82 (203)
Q Consensus 80 ~y~ 82 (203)
.-.
T Consensus 58 ~~~ 60 (234)
T PRK07053 58 IGV 60 (234)
T ss_pred CCC
Confidence 543
No 61
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=96.01 E-value=0.073 Score=36.02 Aligned_cols=81 Identities=21% Similarity=0.237 Sum_probs=57.7
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecccc
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR 81 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y 81 (203)
|+||++++.+ .-+|.-++..+.+.+++ .|.++++.-+++... .+.+.++|.+.+|
T Consensus 1 Mk~IlLvC~a-GmSTSlLV~Km~~aA~~-kg~~~~I~A~s~~e~-------------------~~~~~~~DvvLlG---- 55 (102)
T COG1440 1 MKKILLVCAA-GMSTSLLVTKMKKAAES-KGKDVTIEAYSETEL-------------------SEYIDNADVVLLG---- 55 (102)
T ss_pred CceEEEEecC-CCcHHHHHHHHHHHHHh-CCCceEEEEechhHH-------------------HHhhhcCCEEEEC----
Confidence 4588887765 33578899999998888 688888776655421 3567899999988
Q ss_pred CCccHHHHHHHHHHhcccccccCCCCCceEEEEe
Q 028841 82 FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYS 115 (203)
Q Consensus 82 ~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t 115 (203)
|+++-.++.+... ..-+|+|+.++-+
T Consensus 56 -----PQv~y~~~~~~~~---~~~~giPV~vI~~ 81 (102)
T COG1440 56 -----PQVRYMLKQLKEA---AEEKGIPVEVIDM 81 (102)
T ss_pred -----hHHHHHHHHHHHH---hcccCCCeEEeCH
Confidence 5666666665432 1346789998875
No 62
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=95.52 E-value=0.067 Score=37.38 Aligned_cols=63 Identities=27% Similarity=0.246 Sum_probs=46.0
Q ss_pred ceEEEEEcCCcc--hHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 3 TKVYIVYYSMYG--HVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 3 ~kilii~~S~~g--~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
++|+-|..-++| +|.-.++.+.+...+ .|+++.+..=...-.++ ....+++.+||+||+.+=+
T Consensus 2 ~~IVAVTACPtGIAHTyMAAeaLe~~A~~-~g~~IKVETqGs~G~eN--------------~LT~edI~~Ad~VI~AaD~ 66 (122)
T COG1445 2 KKIVAVTACPTGIAHTYMAAEALEKAAKK-LGVEIKVETQGAVGIEN--------------RLTAEDIAAADVVILAADI 66 (122)
T ss_pred ccEEEEecCCchHHHHHHHHHHHHHHHHH-cCCeEEEEcCCcccccC--------------cCCHHHHHhCCEEEEEecc
Confidence 488888888998 788888898888888 79988765433221111 1136899999999998743
No 63
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=95.35 E-value=0.39 Score=33.01 Aligned_cols=79 Identities=22% Similarity=0.270 Sum_probs=50.4
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecccc
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR 81 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y 81 (203)
|+||++++++.-| |.-+++.+.+..++ .|+++++...+... ..+...++|.|+++
T Consensus 3 ~kkIllvC~~G~s-TSll~~km~~~~~~-~gi~~~V~A~~~~~-------------------~~~~~~~~DviLl~---- 57 (106)
T PRK10499 3 KKHIYLFCSAGMS-TSLLVSKMRAQAEK-YEVPVIIEAFPETL-------------------AGEKGQNADVVLLG---- 57 (106)
T ss_pred CCEEEEECCCCcc-HHHHHHHHHHHHHH-CCCCEEEEEeecch-------------------hhccccCCCEEEEC----
Confidence 4678988877444 56788788777777 68877765432210 01245678977765
Q ss_pred CCccHHHHHHHHHHhcccccccCCCCCceEEEEe
Q 028841 82 FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYS 115 (203)
Q Consensus 82 ~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t 115 (203)
|+++..++.+.. ...++|+.++..
T Consensus 58 -----Pqi~~~~~~i~~-----~~~~~pV~~I~~ 81 (106)
T PRK10499 58 -----PQIAYMLPEIQR-----LLPNKPVEVIDS 81 (106)
T ss_pred -----HHHHHHHHHHHh-----hcCCCCEEEECh
Confidence 677777777642 234578887754
No 64
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=95.15 E-value=0.035 Score=37.43 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=29.1
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
++|||+++++.-+ |..+++.+.+.+++ .|+++++....
T Consensus 3 ~~~ILl~C~~G~s-SS~l~~k~~~~~~~-~gi~~~v~a~~ 40 (95)
T TIGR00853 3 ETNILLLCAAGMS-TSLLVNKMNKAAEE-YGVPVKIAAGS 40 (95)
T ss_pred ccEEEEECCCchh-HHHHHHHHHHHHHH-CCCcEEEEEec
Confidence 4689998888655 45689999999998 78887665543
No 65
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=95.09 E-value=0.26 Score=42.05 Aligned_cols=92 Identities=18% Similarity=0.125 Sum_probs=62.8
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFG 83 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~ 83 (203)
+--|+|.|.+|..++.|+.+.+.+.. .+..+.++++. ..+ .++.+--.+++..|-|.+
T Consensus 48 ~~~vfy~s~~GtA~~~A~~~~e~~~s-ld~~~~llnl~-y~~--------------------~d~pen~~~~lv~~~~~~ 105 (601)
T KOG1160|consen 48 KSKVFYSSLTGTAKKAAKSVHEKLKS-LDELPKLLNLD-YSD--------------------FDVPENALYFLVLPSYDI 105 (601)
T ss_pred cceEEEEeccchHHHHHHHHHHHHHh-cccchhhcCCC-CCc--------------------cCCCcceEEEEEecccCC
Confidence 45788999999999999999999987 45455566554 221 123344567888999988
Q ss_pred ccHHHHHHHHHHhcccc-----cccCCCCCceEEEEecCCC
Q 028841 84 MMAAQFKAFLDATGGLW-----RTQQLAGKPAGMFYSTGSQ 119 (203)
Q Consensus 84 ~~~~~~k~~ld~~~~~~-----~~~~l~gK~~~~~~t~g~~ 119 (203)
.+| +.-|+.++.... ....|+|-++++|+.+...
T Consensus 106 ~~~--~d~~~~~L~Esa~DFRv~~~~L~~~~yaVfGlG~~~ 144 (601)
T KOG1160|consen 106 DPP--LDYFLQWLEESANDFRVGSFPLRGLVYAVFGLGDSE 144 (601)
T ss_pred CCc--HHHHHHHHHhhhhccccCCccccCceEEEEeccchh
Confidence 888 445566653211 1235788889999886544
No 66
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=94.67 E-value=0.059 Score=36.97 Aligned_cols=81 Identities=16% Similarity=0.147 Sum_probs=50.5
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhh--hhhcCeeEEecc
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNE--LAEADGFVFGFP 79 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~--l~~aD~iiigsP 79 (203)
|+|||+++++.-+ |..+++.+.+.+++ .|.++++........ .+. ..++|.|+++
T Consensus 1 MkkILlvCg~G~S-TSlla~k~k~~~~e-~gi~~~i~a~~~~e~-------------------~~~~~~~~~DvIll~-- 57 (104)
T PRK09590 1 MKKALIICAAGMS-SSMMAKKTTEYLKE-QGKDIEVDAITATEG-------------------EKAIAAAEYDLYLVS-- 57 (104)
T ss_pred CcEEEEECCCchH-HHHHHHHHHHHHHH-CCCceEEEEecHHHH-------------------HHhhccCCCCEEEEC--
Confidence 5789999988664 44899999999988 788777644332110 111 2358976665
Q ss_pred ccCCccHHHHHHHHHHhcccccccCCCCCceEEEEe
Q 028841 80 TRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYS 115 (203)
Q Consensus 80 ~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t 115 (203)
++++-.++.+.... .-.++|+.++-.
T Consensus 58 -------PQi~~~~~~i~~~~---~~~~ipv~~I~~ 83 (104)
T PRK09590 58 -------PQTKMYFKQFEEAG---AKVGKPVVQIPP 83 (104)
T ss_pred -------hHHHHHHHHHHHHh---hhcCCCEEEeCH
Confidence 45555555553210 235788887754
No 67
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=94.35 E-value=0.18 Score=33.10 Aligned_cols=59 Identities=20% Similarity=0.167 Sum_probs=41.4
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRF 82 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~ 82 (203)
||+++++|.-|++.-++..+.+.+++ .|++++........ ......++|.|+++..+=.
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~-~gi~~~~~~~~~~~-------------------~~~~~~~~D~il~~~~i~~ 59 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKE-LGIEVEVSAGSILE-------------------VEEIADDADLILLTPQIAY 59 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHH-TTECEEEEEEETTT-------------------HHHHHTT-SEEEEEESSGG
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHh-ccCceEEEEecccc-------------------cccccCCCcEEEEcCccch
Confidence 78999999878777777999999999 78887776655211 0234566999887765543
No 68
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=93.74 E-value=0.41 Score=36.72 Aligned_cols=46 Identities=24% Similarity=0.480 Sum_probs=32.2
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecc
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFP 79 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP 79 (203)
|++||.+. .||...+++.+.+ .|.++++++. .+++.++|+||+.-+
T Consensus 2 ~~~v~~~~-~~~~~~~~~~l~~-----~G~~~~~~~~------------------------~~~~~~~d~iii~G~ 47 (200)
T PRK13143 2 MIVIIDYG-VGNLRSVSKALER-----AGAEVVITSD------------------------PEEILDADGIVLPGV 47 (200)
T ss_pred eEEEEECC-CccHHHHHHHHHH-----CCCeEEEECC------------------------HHHHccCCEEEECCC
Confidence 78888765 6777777776655 4667777631 135778999999764
No 69
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=93.59 E-value=0.23 Score=33.26 Aligned_cols=32 Identities=9% Similarity=0.132 Sum_probs=27.7
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCce
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVE 34 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~ 34 (203)
|.|||.++|+.-|.+-.+...+.+.+++ .|++
T Consensus 1 ~~KIL~aCG~GvgSS~~ik~kve~~l~~-~gi~ 32 (93)
T COG3414 1 MIKILAACGNGVGSSTMIKMKVEEVLKE-LGID 32 (93)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHH-cCCC
Confidence 4599999999888888899999999998 6774
No 70
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=93.22 E-value=0.17 Score=34.36 Aligned_cols=78 Identities=18% Similarity=0.149 Sum_probs=50.4
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFG 83 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~ 83 (203)
||++++++- -+|..+++.+.+.+++ .|.++++.-.+.... .+.+.++|.|+++ |
T Consensus 2 ~Ill~C~~G-aSSs~la~km~~~a~~-~gi~~~i~a~~~~e~-------------------~~~~~~~Dvill~-P---- 55 (99)
T cd05565 2 NVLVLCAGG-GTSGLLANALNKGAKE-RGVPLEAAAGAYGSH-------------------YDMIPDYDLVILA-P---- 55 (99)
T ss_pred EEEEECCCC-CCHHHHHHHHHHHHHH-CCCcEEEEEeeHHHH-------------------HHhccCCCEEEEc-C----
Confidence 677777443 5688899999999998 788887665433211 2457788966554 3
Q ss_pred ccHHHHHHHHHHhcccccccCCCCCceEEEE
Q 028841 84 MMAAQFKAFLDATGGLWRTQQLAGKPAGMFY 114 (203)
Q Consensus 84 ~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~ 114 (203)
+++-.++.+.... .-.|+|+.++-
T Consensus 56 ----Qv~~~~~~i~~~~---~~~~ipv~~I~ 79 (99)
T cd05565 56 ----QMASYYDELKKDT---DRLGIKLVTTT 79 (99)
T ss_pred ----hHHHHHHHHHHHh---hhcCCCEEEeC
Confidence 4555555553210 23578887775
No 71
>PRK06490 glutamine amidotransferase; Provisional
Probab=93.13 E-value=0.56 Score=37.12 Aligned_cols=34 Identities=12% Similarity=0.157 Sum_probs=25.6
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
++|++|-.+..++...+.+.+.+ .|.++++++..
T Consensus 8 ~~vlvi~h~~~~~~g~l~~~l~~-----~g~~~~v~~~~ 41 (239)
T PRK06490 8 RPVLIVLHQERSTPGRVGQLLQE-----RGYPLDIRRPR 41 (239)
T ss_pred ceEEEEecCCCCCChHHHHHHHH-----CCCceEEEecc
Confidence 49999999888877777777753 46678877654
No 72
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=92.69 E-value=0.99 Score=34.93 Aligned_cols=84 Identities=21% Similarity=0.172 Sum_probs=46.7
Q ss_pred eEEEEEcCCcc----hHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecc
Q 028841 4 KVYIVYYSMYG----HVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFP 79 (203)
Q Consensus 4 kilii~~S~~g----~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP 79 (203)
|||||++...| .-....+.+++.+++..++++++.+-.+. ...+.|+++|+||+-+-
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~~-------------------~~~~~L~~~Dvvv~~~~ 61 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPDD-------------------LTPENLKGYDVVVFYNT 61 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGGC-------------------TSHHCHCT-SEEEEE-S
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCccc-------------------CChhHhcCCCEEEEECC
Confidence 78999988422 22456667777776226777775543211 11457999999998866
Q ss_pred ccCCccHHHHHHHHHHhcccccccCCCCCceEEEE
Q 028841 80 TRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFY 114 (203)
Q Consensus 80 ~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~ 114 (203)
.-..--+++.+.|.+.+. .|+.+..+=
T Consensus 62 ~~~~l~~~~~~al~~~v~--------~Ggglv~lH 88 (217)
T PF06283_consen 62 GGDELTDEQRAALRDYVE--------NGGGLVGLH 88 (217)
T ss_dssp SCCGS-HHHHHHHHHHHH--------TT-EEEEEG
T ss_pred CCCcCCHHHHHHHHHHHH--------cCCCEEEEc
Confidence 511124456666666662 576655443
No 73
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=92.54 E-value=0.21 Score=33.66 Aligned_cols=79 Identities=24% Similarity=0.299 Sum_probs=48.2
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFG 83 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~ 83 (203)
|||+++++.-+.+ .+++.+.+.+++ .|.++++...+-... .+...++|.|+ .+|
T Consensus 1 kIl~~Cg~G~sTS-~~~~ki~~~~~~-~~~~~~v~~~~~~~~-------------------~~~~~~~Diil-~~P---- 54 (96)
T cd05564 1 KILLVCSAGMSTS-ILVKKMKKAAEK-RGIDAEIEAVPESEL-------------------EEYIDDADVVL-LGP---- 54 (96)
T ss_pred CEEEEcCCCchHH-HHHHHHHHHHHH-CCCceEEEEecHHHH-------------------HHhcCCCCEEE-ECh----
Confidence 5888888865544 689999999998 788766554432110 23457788555 444
Q ss_pred ccHHHHHHHHHHhcccccccCCCCCceEEEEe
Q 028841 84 MMAAQFKAFLDATGGLWRTQQLAGKPAGMFYS 115 (203)
Q Consensus 84 ~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t 115 (203)
+++..++.+... -...++|+.++-.
T Consensus 55 ----qv~~~~~~i~~~---~~~~~~pv~~I~~ 79 (96)
T cd05564 55 ----QVRYMLDEVKKK---AAEYGIPVAVIDM 79 (96)
T ss_pred ----hHHHHHHHHHHH---hccCCCcEEEcCh
Confidence 455555555321 0235788887654
No 74
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=92.40 E-value=0.36 Score=31.74 Aligned_cols=34 Identities=15% Similarity=0.253 Sum_probs=28.0
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEE
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKL 37 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~ 37 (203)
+|+++++++..|.+..++..+.+.+.+ .+..+++
T Consensus 1 ~~ilivC~~G~~tS~~l~~~i~~~~~~-~~i~~~v 34 (89)
T cd05566 1 KKILVACGTGVATSTVVASKVKELLKE-NGIDVKV 34 (89)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHH-CCCceEE
Confidence 489999999999999999999999977 5665444
No 75
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=90.41 E-value=1.6 Score=33.10 Aligned_cols=104 Identities=11% Similarity=-0.032 Sum_probs=50.7
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhh--hhcCeeEEec
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNEL--AEADGFVFGF 78 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l--~~aD~iiigs 78 (203)
|.+|++|+..... ...=+-...+.+++ .|.++++..+.......+.....-....|. ..+.+ .++|.|++..
T Consensus 1 ~~~~~~il~~~g~--~~~e~~~p~~~l~~-ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~---~l~~~~~~~~D~l~ipG 74 (196)
T PRK11574 1 MSASALVCLAPGS--EETEAVTTIDLLVR-GGIKVTTASVASDGNLEITCSRGVKLLADA---PLVEVADGDFDVIVLPG 74 (196)
T ss_pred CCceEEEEeCCCc--chhhHhHHHHHHHH-CCCeEEEEEccCCCCceEEcCCCCEEeCCC---CHHHCCCCCCCEEEECC
Confidence 6688988876432 22222233455555 477888877643110001111010001111 12222 4689988753
Q ss_pred cc---cCCccHHHHHHHHHHhcccccccCCCCCceEEEEecC
Q 028841 79 PT---RFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTG 117 (203)
Q Consensus 79 P~---y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g 117 (203)
.. ....-++.+..||.+.. -+||+++.++++.
T Consensus 75 G~~~~~~~~~~~~l~~~L~~~~-------~~g~~v~aic~G~ 109 (196)
T PRK11574 75 GIKGAECFRDSPLLVETVRQFH-------RSGRIVAAICAAP 109 (196)
T ss_pred CCchhhhhhhCHHHHHHHHHHH-------HCCCEEEEECHhH
Confidence 21 11122345666776653 4788888887753
No 76
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=90.24 E-value=1.3 Score=29.15 Aligned_cols=59 Identities=25% Similarity=0.289 Sum_probs=37.2
Q ss_pred EEEcCCcc--hHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 7 IVYYSMYG--HVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 7 ii~~S~~g--~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
+|..++.| +|.-.++.+.+..++ .|+++.+.--...-+. + ....+++.++|.||+..-+
T Consensus 2 ~vtacp~G~Aht~lAae~L~~aA~~-~G~~i~VE~qg~~g~~-----------~---~lt~~~i~~Ad~viia~d~ 62 (85)
T TIGR00829 2 AVTACPTGIAHTFMAAEALEKAAKK-RGWEVKVETQGSVGAQ-----------N---ALTAEDIAAADGVILAADR 62 (85)
T ss_pred EEecCCCcHHHHHHHHHHHHHHHHH-CCCeEEEEecCCcCcc-----------C---CCCHHHHHhCCEEEEeccC
Confidence 34556666 676677788888877 7888765432221111 0 1125789999999998554
No 77
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=90.23 E-value=1.4 Score=29.65 Aligned_cols=60 Identities=27% Similarity=0.256 Sum_probs=37.3
Q ss_pred EEEEcCCcc--hHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 6 YIVYYSMYG--HVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 6 lii~~S~~g--~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
++|..+++| +|..+++.+.+.+++ .|+++.+.--...-+. +. ...+.+.++|.||+..-.
T Consensus 2 ~~i~ac~~G~a~s~laa~~L~~aa~~-~g~~~~ve~~~~~g~~-----------~~---l~~~~i~~Ad~vi~~~~~ 63 (96)
T cd05569 2 VAVTACPTGIAHTYMAAEALEKAAKK-LGWEIKVETQGSLGIE-----------NE---LTAEDIAEADAVILAADV 63 (96)
T ss_pred EEEEECCCchhHHHHHHHHHHHHHHH-CCCeEEEEEecCcCcc-----------Cc---CCHHHHhhCCEEEEecCC
Confidence 344555555 566777888888888 7988765432221110 01 113689999999998654
No 78
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=89.53 E-value=1.2 Score=34.32 Aligned_cols=49 Identities=27% Similarity=0.430 Sum_probs=30.6
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEec
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGF 78 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigs 78 (203)
|| ||.||.+. .||.+.+++++.+ .|.++++.-.++ .+++.++|+|||.-
T Consensus 1 ~~-~~~iid~g-~gn~~s~~~al~~-----~g~~~~v~~~~~----------------------~~~l~~~d~lIlpG 49 (209)
T PRK13146 1 MM-TVAIIDYG-SGNLRSAAKALER-----AGAGADVVVTAD----------------------PDAVAAADRVVLPG 49 (209)
T ss_pred CC-eEEEEECC-CChHHHHHHHHHH-----cCCCccEEEECC----------------------HHHhcCCCEEEECC
Confidence 56 88887655 4677777777754 244332222222 35689999998854
No 79
>PRK09065 glutamine amidotransferase; Provisional
Probab=89.24 E-value=3.2 Score=32.72 Aligned_cols=75 Identities=8% Similarity=0.014 Sum_probs=40.8
Q ss_pred CceEEEEEcC-CcchHH----HHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEE
Q 028841 2 ATKVYIVYYS-MYGHVE----KLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVF 76 (203)
Q Consensus 2 m~kilii~~S-~~g~T~----~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iii 76 (203)
|+|++|+-.. +....+ ...+.+...+.. .|.+++++++.+..+ ..++.++|+||+
T Consensus 1 ~~~i~iL~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------------------~p~~~~~dgvvi 60 (237)
T PRK09065 1 VKPLLIIQTGTPPPSIRARYGDFPHWIRVALGL-AEQPVVVVRVFAGEP-------------------LPAPDDFAGVII 60 (237)
T ss_pred CCcEEEEECCCCChhHHhhcCCHHHHHHHHhcc-CCceEEEEeccCCCC-------------------CCChhhcCEEEE
Confidence 5789888543 221111 134455555555 577888888765321 124677888866
Q ss_pred e-ccccCCc-cH--HHHHHHHHHh
Q 028841 77 G-FPTRFGM-MA--AQFKAFLDAT 96 (203)
Q Consensus 77 g-sP~y~~~-~~--~~~k~~ld~~ 96 (203)
. +|..... .| ..++.|+...
T Consensus 61 ~Gg~~~~~d~~~w~~~~~~~i~~~ 84 (237)
T PRK09065 61 TGSWAMVTDRLDWSERTADWLRQA 84 (237)
T ss_pred eCCCcccCCCchhHHHHHHHHHHH
Confidence 5 6643222 22 3345566553
No 80
>PRK11404 putative PTS system transporter subunits IIBC; Provisional
Probab=89.12 E-value=1.4 Score=38.69 Aligned_cols=59 Identities=22% Similarity=0.248 Sum_probs=40.7
Q ss_pred eEEEEEcCCcc--hHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEe
Q 028841 4 KVYIVYYSMYG--HVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFG 77 (203)
Q Consensus 4 kilii~~S~~g--~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiig 77 (203)
|++.|..+++| +|--.++.+.+..++ .|+++.+.--...-.+ + ..+.+++.+||.||+.
T Consensus 5 kivaVtacp~GiAht~mAaeaL~~aA~~-~G~~i~VEtqg~~g~~-----------~---~lt~~~i~~Ad~VIia 65 (482)
T PRK11404 5 RIVAITNCPAGIAHTYMVAEALEQKARS-LGHTIKVETQGSSGVE-----------N---RLSSEEIAAADYVILA 65 (482)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHHHH-CCCeEEEEecCCccCC-----------C---CCCHHHHHhCCEEEEe
Confidence 89999888887 566677888888887 7888765432221111 0 1125789999999998
No 81
>PRK08250 glutamine amidotransferase; Provisional
Probab=88.89 E-value=3.2 Score=32.70 Aligned_cols=55 Identities=13% Similarity=0.154 Sum_probs=34.1
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEE-ecccc
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVF-GFPTR 81 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iii-gsP~y 81 (203)
||+||.+...-....+...+.+ .|++++++++..-.+ + ..++.++|+||+ |+|-.
T Consensus 2 ~i~vi~h~~~e~~g~~~~~~~~-----~g~~~~~~~~~~g~~--------------~----p~~~~~~d~vii~GGp~~ 57 (235)
T PRK08250 2 RVHFIIHESFEAPGAYLKWAEN-----RGYDISYSRVYAGEA--------------L----PENADGFDLLIVMGGPQS 57 (235)
T ss_pred eEEEEecCCCCCchHHHHHHHH-----CCCeEEEEEccCCCC--------------C----CCCccccCEEEECCCCCC
Confidence 8999998875444445555533 467888877553210 1 124678999877 77744
No 82
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=88.28 E-value=1.5 Score=28.65 Aligned_cols=35 Identities=17% Similarity=0.157 Sum_probs=27.4
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEE
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLW 38 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~ 38 (203)
+||+++++|.-|.+.-++..+.+.+.+ .+...++.
T Consensus 1 ~kilvvCg~G~gtS~ml~~ki~~~~~~-~~~~~~v~ 35 (87)
T cd05567 1 KKIVFACDAGMGSSAMGASVLRKKLKK-AGLEIPVT 35 (87)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHH-CCCceEEE
Confidence 389999999888888788899998887 56654443
No 83
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=87.30 E-value=7.5 Score=29.38 Aligned_cols=51 Identities=20% Similarity=0.189 Sum_probs=32.4
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeE-Eeccc
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFV-FGFPT 80 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ii-igsP~ 80 (203)
|||||-... ..|..+++.+.+ .|.++++++..+.. .+.+.++|+|| .|.|-
T Consensus 3 ~iliid~~d-sf~~~i~~~l~~-----~g~~~~v~~~~~~~--------------------~~~l~~~d~iIi~gGp~ 54 (190)
T PRK06895 3 KLLIINNHD-SFTFNLVDLIRK-----LGVPMQVVNVEDLD--------------------LDEVENFSHILISPGPD 54 (190)
T ss_pred EEEEEeCCC-chHHHHHHHHHH-----cCCcEEEEECCccC--------------------hhHhccCCEEEECCCCC
Confidence 899986542 234446666644 36688888765432 24577899998 55664
No 84
>PRK05637 anthranilate synthase component II; Provisional
Probab=86.90 E-value=12 Score=28.92 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=23.0
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
|+||++|-. -.|+|..+++.+.+ .|+++++++..
T Consensus 1 ~~~il~iD~-~dsf~~nl~~~l~~-----~g~~~~v~~~~ 34 (208)
T PRK05637 1 MTHVVLIDN-HDSFVYNLVDAFAV-----AGYKCTVFRNT 34 (208)
T ss_pred CCEEEEEEC-CcCHHHHHHHHHHH-----CCCcEEEEeCC
Confidence 567777654 35778888887765 35678887653
No 85
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=86.55 E-value=6.6 Score=31.55 Aligned_cols=54 Identities=11% Similarity=0.146 Sum_probs=33.7
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecc
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFP 79 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP 79 (203)
+||+|+.+.-+.+-..+++++. + .|.+++++.+.+... ....+.++|+|||.--
T Consensus 4 ~kvaVl~~pG~n~d~e~~~Al~----~-aG~~v~~v~~~~~~~------------------~~~~l~~~DgLvipGG 57 (261)
T PRK01175 4 IRVAVLRMEGTNCEDETVKAFR----R-LGVEPEYVHINDLAA------------------ERKSVSDYDCLVIPGG 57 (261)
T ss_pred CEEEEEeCCCCCCHHHHHHHHH----H-CCCcEEEEeeccccc------------------cccchhhCCEEEECCC
Confidence 5898888765544444544443 3 477888887654210 0235789999988754
No 86
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=86.30 E-value=2.4 Score=37.88 Aligned_cols=63 Identities=27% Similarity=0.198 Sum_probs=43.3
Q ss_pred ceEEEEEcCCcc--hHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 3 TKVYIVYYSMYG--HVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 3 ~kilii~~S~~g--~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
+|++.|..+++| +|--.++.+.+..++ .|+++.+.--...-.+ + ..+.+++.++|.||+..-+
T Consensus 104 ~kivaVtacptGiAht~mAAeaL~~aA~~-~G~~i~VEtqg~~g~~-----------n---~lt~~~i~~Ad~VIia~d~ 168 (563)
T PRK10712 104 KRVVAVTACPTGVAHTFMAAEAIETEAKK-RGWWVKVETRGSVGAG-----------N---AITPEEVAAADLVIVAADI 168 (563)
T ss_pred ccEEEEecCCCchhHHHHHHHHHHHHHHH-CCCeEEEEecCCcccC-----------C---CCCHHHHHhCCEEEEecCC
Confidence 478888888887 677777888888888 7888775433221111 0 1125789999999998654
No 87
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=86.00 E-value=2.6 Score=26.50 Aligned_cols=30 Identities=37% Similarity=0.474 Sum_probs=24.0
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCce
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVE 34 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~ 34 (203)
|+++++++..|.+.-+...+.+.+.+ .+..
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~~~~~-~~~~ 30 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEKAAKE-LGIE 30 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHHHHHH-CCCe
Confidence 57777777778888899999999987 5654
No 88
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=85.93 E-value=3.2 Score=32.15 Aligned_cols=48 Identities=25% Similarity=0.399 Sum_probs=32.5
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFP 79 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP 79 (203)
|| ||.||-+. .||-..+++++.. .|.++.+++. .+++.++|+||+.-|
T Consensus 1 ~~-~v~iid~~-~GN~~sl~~al~~-----~g~~v~vv~~------------------------~~~l~~~d~iIlPG~ 48 (210)
T CHL00188 1 MM-KIGIIDYS-MGNLHSVSRAIQQ-----AGQQPCIINS------------------------ESELAQVHALVLPGV 48 (210)
T ss_pred Cc-EEEEEEcC-CccHHHHHHHHHH-----cCCcEEEEcC------------------------HHHhhhCCEEEECCC
Confidence 66 78887655 6777777777654 3667777642 135678999998664
No 89
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=85.33 E-value=4.2 Score=31.67 Aligned_cols=135 Identities=15% Similarity=0.108 Sum_probs=66.4
Q ss_pred CceEEEEEcCC---cchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHH-------Hhc-cCCCCCCCC------CCCCC
Q 028841 2 ATKVYIVYYSM---YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEE-------VLG-KMSAPPKSD------VPIIT 64 (203)
Q Consensus 2 m~kilii~~S~---~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~-------~~~-~~~~~~~~d------~~~~~ 64 (203)
|+||+|+..|. .|.-..=+-...+.+++ .|+++++........+. ... ........+ .....
T Consensus 1 ~kkVlills~~~~~dG~e~~E~~~P~~~L~~-aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (217)
T PRK11780 1 MKKIAVILSGCGVYDGSEIHEAVLTLLALDR-AGAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEIKDLA 79 (217)
T ss_pred CCEEEEEEccCCCCCCEehhHHHHHHHHHHH-CCCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCCCchh
Confidence 46899988652 34321112233466676 79999998875421100 000 000000000 00000
Q ss_pred hhhhhhcCeeEEecc---ccC-Cc---------cHHHHHHHHHHhcccccccCCCCCceEEEEecCCC----C-CChHH-
Q 028841 65 PNELAEADGFVFGFP---TRF-GM---------MAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQ----G-GGQET- 125 (203)
Q Consensus 65 ~~~l~~aD~iiigsP---~y~-~~---------~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~----~-~~~~~- 125 (203)
.-...++|+|||--- .++ .. ....+..++.++. -.||+++.++.+.+. . .+...
T Consensus 80 ~v~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~-------~~gK~vaAIChgp~iL~~~~~~gr~~T 152 (217)
T PRK11780 80 EADAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFH-------QAGKPIGFICIAPAMLPKILGAGVKLT 152 (217)
T ss_pred HCChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHH-------HCCCEEEEECHHHHHHHHHhccCcEEE
Confidence 114678999988643 111 11 1344566665542 478999988865321 0 11110
Q ss_pred HH--HHHHHHHHHcCcEEecC
Q 028841 126 TA--LTAITQLVHHGMIFVPI 144 (203)
Q Consensus 126 ~~--~~l~~~l~~~g~~~v~~ 144 (203)
.. ..+...+.+.|.+++..
T Consensus 153 ~~~~~~~~~~~~~aGa~~vd~ 173 (217)
T PRK11780 153 IGNDEDTAAAIEKMGGEHVDC 173 (217)
T ss_pred ecCChhhHHHHHHCCCEEEcC
Confidence 01 23556677888888764
No 90
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=84.17 E-value=4.3 Score=31.19 Aligned_cols=82 Identities=20% Similarity=0.278 Sum_probs=46.7
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
|| +|.||-+- .||-+.+.+++.+ .|.++.+.+ ..+.+..||.||+--
T Consensus 1 m~-~i~IIDyg-~GNL~Sv~~Aler-----~G~~~~vs~------------------------d~~~i~~AD~liLPG-- 47 (204)
T COG0118 1 MM-MVAIIDYG-SGNLRSVKKALER-----LGAEVVVSR------------------------DPEEILKADKLILPG-- 47 (204)
T ss_pred CC-EEEEEEcC-cchHHHHHHHHHH-----cCCeeEEec------------------------CHHHHhhCCEEEecC--
Confidence 44 78887433 4777776666643 355665543 146789999999842
Q ss_pred cCCccHHHHHHHHHHh-cccccccCCCCCceEEEEec
Q 028841 81 RFGMMAAQFKAFLDAT-GGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 81 y~~~~~~~~k~~ld~~-~~~~~~~~l~gK~~~~~~t~ 116 (203)
-|+++..|+++-.+- ..........+||+.-+|.+
T Consensus 48 -VGaf~~am~~L~~~gl~~~i~~~~~~~kP~LGIClG 83 (204)
T COG0118 48 -VGAFGAAMANLRERGLIEAIKEAVESGKPFLGICLG 83 (204)
T ss_pred -CCCHHHHHHHHHhcchHHHHHHHHhcCCCEEEEeHh
Confidence 366666666653330 00000112356888777753
No 91
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=83.64 E-value=2.3 Score=27.22 Aligned_cols=27 Identities=26% Similarity=0.199 Sum_probs=23.8
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhccc
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASS 29 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~ 29 (203)
.|+++++++..|.+..++..+.+.+.+
T Consensus 1 ~kilivC~~G~~~s~~l~~~l~~~~~~ 27 (85)
T cd05568 1 KKALVVCPSGIGTSRLLKSKLKKLFPE 27 (85)
T ss_pred CeEEEECCCCHHHHHHHHHHHHHHCCC
Confidence 378999999899999999999999965
No 92
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=83.39 E-value=2 Score=36.30 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=30.2
Q ss_pred CceEEEEEcCCc-chHHHHHHHHHHhcccCC--CceEEEEEcCCC
Q 028841 2 ATKVYIVYYSMY-GHVEKLAEEIKKGASSVE--GVEAKLWQVPET 43 (203)
Q Consensus 2 m~kilii~~S~~-g~T~~la~~i~~~~~~~~--g~~v~~~~l~~~ 43 (203)
|+||||++.|.. |+ .+.|+++++.+.+.. +.+++++|+-+.
T Consensus 5 ~~~vlil~~~~G~GH-~~aA~al~~~~~~~~~~~~~~~~~D~~~~ 48 (391)
T PRK13608 5 NKKILIITGSFGNGH-MQVTQSIVNQLNDMNLDHLSVIEHDLFME 48 (391)
T ss_pred CceEEEEECCCCchH-HHHHHHHHHHHHhhCCCCceEEEeehHHh
Confidence 459999999964 55 568999999997621 357887887554
No 93
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=83.09 E-value=3.8 Score=26.53 Aligned_cols=30 Identities=27% Similarity=0.231 Sum_probs=24.8
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCce
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVE 34 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~ 34 (203)
|+++++++..|.++.+...+.+.+.+ .+..
T Consensus 1 kilvvC~~G~~tS~ll~~kl~~~f~~-~~i~ 30 (86)
T cd05563 1 KILAVCGSGLGSSLMLKMNVEKVLKE-LGIE 30 (86)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHH-CCCc
Confidence 58898999889888888899999976 5654
No 94
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=82.99 E-value=11 Score=28.73 Aligned_cols=85 Identities=18% Similarity=0.067 Sum_probs=44.0
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCC--hhhhhhcCeeEEecccc
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIIT--PNELAEADGFVFGFPTR 81 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~--~~~l~~aD~iiigsP~y 81 (203)
||.||-.|.. +...|.+.+.. .|.+++-+--....... + +.-+..+.|+.+.. .+.+...|+||-+.-.|
T Consensus 2 KIaiIgAsG~-----~Gs~i~~EA~~-RGHeVTAivRn~~K~~~-~-~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 2 KIAIIGASGK-----AGSRILKEALK-RGHEVTAIVRNASKLAA-R-QGVTILQKDIFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred eEEEEecCch-----hHHHHHHHHHh-CCCeeEEEEeChHhccc-c-ccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence 8999988843 23333333333 46776644321111100 0 11122234553333 37899999999998888
Q ss_pred CCccHHHHHHHHHHh
Q 028841 82 FGMMAAQFKAFLDAT 96 (203)
Q Consensus 82 ~~~~~~~~k~~ld~~ 96 (203)
+...-...+.-++.+
T Consensus 74 ~~~~~~~~~k~~~~l 88 (211)
T COG2910 74 ASDNDELHSKSIEAL 88 (211)
T ss_pred CCChhHHHHHHHHHH
Confidence 644333333334444
No 95
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=82.76 E-value=4.2 Score=30.85 Aligned_cols=12 Identities=33% Similarity=0.578 Sum_probs=9.6
Q ss_pred hhhhcCeeEEec
Q 028841 67 ELAEADGFVFGF 78 (203)
Q Consensus 67 ~l~~aD~iiigs 78 (203)
++.++|+||+.-
T Consensus 35 ~l~~~dgiii~G 46 (189)
T PRK13525 35 DLDEIDGLILPG 46 (189)
T ss_pred HhccCCEEEECC
Confidence 577899998875
No 96
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=82.01 E-value=11 Score=29.39 Aligned_cols=48 Identities=19% Similarity=0.209 Sum_probs=29.0
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecc
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFP 79 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP 79 (203)
||+|+.+-..-....+++++.+ .|++++++...+. .+.++|+|||.-.
T Consensus 2 ~v~Vl~~~G~n~~~~~~~al~~-----~G~~~~~i~~~~~-----------------------~l~~~d~lilpGG 49 (227)
T TIGR01737 2 KVAVIRFPGTNCDRDTVYALRL-----LGVDAEIVWYEDG-----------------------SLPDYDGVVLPGG 49 (227)
T ss_pred eEEEEeCCCcCcHHHHHHHHHH-----CCCeEEEEecCCC-----------------------CCCCCCEEEECCC
Confidence 8888876533223445666553 4777777754321 2567899887653
No 97
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=81.91 E-value=4.3 Score=28.02 Aligned_cols=106 Identities=19% Similarity=0.171 Sum_probs=54.3
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
|-+||||+... -++-.+.+.+++ .|+++..++-.+.. .......+|.+++-.|.
T Consensus 1 ~ikkvLIanrG------eia~r~~ra~r~-~Gi~tv~v~s~~d~-------------------~s~~~~~ad~~~~~~~~ 54 (110)
T PF00289_consen 1 MIKKVLIANRG------EIAVRIIRALRE-LGIETVAVNSNPDT-------------------VSTHVDMADEAYFEPPG 54 (110)
T ss_dssp SSSEEEESS-H------HHHHHHHHHHHH-TTSEEEEEEEGGGT-------------------TGHHHHHSSEEEEEESS
T ss_pred CCCEEEEECCC------HHHHHHHHHHHH-hCCcceeccCchhc-------------------ccccccccccceecCcc
Confidence 55788885432 236666677777 68888877754321 13467788888776533
Q ss_pred cCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCC
Q 028841 81 RFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 81 y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~ 145 (203)
-...---.+...++-.. +....+++ .|+ +.-.+. .++.+.+.+.|+.++|..
T Consensus 55 ~~~~~yl~~e~I~~ia~--------~~g~~~i~--pGy-g~lse~--~~fa~~~~~~gi~fiGp~ 106 (110)
T PF00289_consen 55 PSPESYLNIEAIIDIAR--------KEGADAIH--PGY-GFLSEN--AEFAEACEDAGIIFIGPS 106 (110)
T ss_dssp SGGGTTTSHHHHHHHHH--------HTTESEEE--STS-STTTTH--HHHHHHHHHTT-EESSS-
T ss_pred hhhhhhccHHHHhhHhh--------hhcCcccc--ccc-chhHHH--HHHHHHHHHCCCEEECcC
Confidence 32211122233333331 11222322 232 222221 236677778899998753
No 98
>PRK13055 putative lipid kinase; Reviewed
Probab=81.69 E-value=6 Score=32.85 Aligned_cols=40 Identities=18% Similarity=0.254 Sum_probs=28.6
Q ss_pred CCceEEEEEcCCc--chHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 1 MATKVYIVYYSMY--GHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 1 Mm~kilii~~S~~--g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
||+|+++|+-... |...+..+.+.+.+.+ .|.+++++...
T Consensus 1 m~~r~~iI~NP~sG~~~~~~~~~~i~~~l~~-~g~~~~i~~t~ 42 (334)
T PRK13055 1 MQKRARLIYNPTSGQEIMKKNVADILDILEQ-AGYETSAFQTT 42 (334)
T ss_pred CCceEEEEECCCCCchhHHHHHHHHHHHHHH-cCCeEEEEEee
Confidence 7789988886544 4456777888888887 67777765543
No 99
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=81.14 E-value=22 Score=27.72 Aligned_cols=115 Identities=18% Similarity=0.140 Sum_probs=53.6
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHH-hcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKK-GASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFP 79 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~-~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP 79 (203)
|| |++++|...+|. ++.+.+.. ++.. .=+.+.++.+..+.++ +.|+...+.+.++|.+|--
T Consensus 1 ~m-ki~vlt~g~yG~--R~~~nl~~~~f~~---~~v~v~~~Pe~~~~fi----------e~P~~~Lp~~~e~Di~va~-- 62 (224)
T COG1810 1 MM-KILVLTDGEYGK--RAVNNLACKGFKN---QFVAVKEYPEELPDFI----------EEPEDLLPKLPEADIVVAY-- 62 (224)
T ss_pred Cc-EEEEEeeccchH--HHHHhHhhhcccc---ceEEEEeccccccchh----------hCHHHhcCCCCCCCEEEEe--
Confidence 66 999999988874 44444442 1221 1133333322222111 1111112234788887742
Q ss_pred ccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcC
Q 028841 80 TRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTF 148 (203)
Q Consensus 80 ~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~ 148 (203)
++.+.+.-.|-... ...+.+..++.+ |.+.+.+ .+|.+.....|+.+...-..|
T Consensus 63 ----~lHPDl~~~L~e~~------~~~~~~alIvp~--~~~~g~r---kqL~~~~~~~g~e~~~p~p~C 116 (224)
T COG1810 63 ----GLHPDLLLALPEKA------AEGGVKALIVPA--EPPEGLR---KQLKEFCEELGVEFEAPEPFC 116 (224)
T ss_pred ----ccCccHHHHHHHHH------HhCCccEEEEec--CCChhHH---HHHHHHhhhcceeeecCCccc
Confidence 22233333322221 134444444433 4444543 346666677788876555444
No 100
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=81.08 E-value=5.3 Score=36.32 Aligned_cols=62 Identities=21% Similarity=0.183 Sum_probs=41.6
Q ss_pred eEEEEEcCCcc--hHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 4 KVYIVYYSMYG--HVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 4 kilii~~S~~g--~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
++++|..+++| +|--.++.+.+..++ .|+++.+.--...-+.+ ....+++.+||.||+..-.
T Consensus 165 ~i~avtacp~G~aht~mAae~L~~aA~~-~g~~i~vE~~g~~g~~~--------------~lt~~~i~~Ad~Viia~d~ 228 (631)
T PRK09765 165 TIVCVTACPAGIAHTYMAAEYLEKAGRK-LGVNVYVEKQGANGIEG--------------RLTADQLNSATACIFAAEV 228 (631)
T ss_pred eEEEEEeCCCcchHHHHHHHHHHHHHHH-CCCeEEEEecCCcCCCC--------------CCCHHHHHhCCEEEEeecC
Confidence 68888888877 677777888888887 78887654332221110 1125789999999888544
No 101
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=80.40 E-value=5 Score=31.67 Aligned_cols=14 Identities=14% Similarity=0.235 Sum_probs=11.0
Q ss_pred hhhhhhcCeeEEec
Q 028841 65 PNELAEADGFVFGF 78 (203)
Q Consensus 65 ~~~l~~aD~iiigs 78 (203)
.+.+.++|+|+++-
T Consensus 74 ~~~l~~ad~I~v~G 87 (233)
T PRK05282 74 VAAIENAEAIFVGG 87 (233)
T ss_pred HHHHhcCCEEEECC
Confidence 45799999888863
No 102
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=79.64 E-value=7.2 Score=29.74 Aligned_cols=43 Identities=19% Similarity=0.325 Sum_probs=29.5
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEE
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVF 76 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iii 76 (203)
||+||.+. .||...+++++.+ .|+++++++ + .+++.++|+||+
T Consensus 2 ~i~iid~g-~gn~~s~~~~l~~-----~g~~~~~v~--~----------------------~~~~~~~d~iIl 44 (196)
T PRK13170 2 NVVIIDTG-CANLSSVKFAIER-----LGYEPVVSR--D----------------------PDVILAADKLFL 44 (196)
T ss_pred eEEEEeCC-CchHHHHHHHHHH-----CCCeEEEEC--C----------------------HHHhCCCCEEEE
Confidence 78888654 4677777776654 366777663 1 246778899998
No 103
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=79.16 E-value=10 Score=29.82 Aligned_cols=43 Identities=7% Similarity=-0.135 Sum_probs=27.4
Q ss_pred hhhhcCeeEEec---cccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 67 ELAEADGFVFGF---PTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 67 ~l~~aD~iiigs---P~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
+..+||+|+|-- |.+...-...++.++.+.. -.||+++.+|.+
T Consensus 91 ~~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~-------~~gK~iaAIChg 136 (231)
T cd03147 91 NPDDYGIFFVAGGHGTLFDFPHATNLQKIAQQIY-------ANGGVVAAVCHG 136 (231)
T ss_pred CHhhCcEEEECCCCchhhhcccCHHHHHHHHHHH-------HcCCEEEEEChH
Confidence 467999998853 4454444566777777653 246676666643
No 104
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=79.07 E-value=7.2 Score=31.60 Aligned_cols=42 Identities=14% Similarity=0.039 Sum_probs=28.7
Q ss_pred CCceEEEEEcCCc---chHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 1 MATKVYIVYYSMY---GHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 1 Mm~kilii~~S~~---g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
|+++|.|+.++.+ ...-.-++.+.+.+++ .|+++.+++..+.
T Consensus 3 ~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~-~g~~v~~i~~~~~ 47 (304)
T PRK01372 3 MFGKVAVLMGGTSAEREVSLNSGAAVLAALRE-AGYDAHPIDPGED 47 (304)
T ss_pred CCcEEEEEeCCCCCCceEeHHhHHHHHHHHHH-CCCEEEEEecCcc
Confidence 3468999997643 3333345677777777 7999999986643
No 105
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=78.92 E-value=3.8 Score=36.77 Aligned_cols=35 Identities=17% Similarity=0.122 Sum_probs=30.1
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEE
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLW 38 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~ 38 (203)
.||+++++|--|.+--++..+.+.+++ .|.++++.
T Consensus 507 mKILvaCGsGiGTStmva~kIkk~Lke-~GI~veV~ 541 (602)
T PRK09548 507 VRILAVCGQGQGSSMMMKMKIKKYLDK-RGIPIIMD 541 (602)
T ss_pred cEEEEECCCCchHHHHHHHHHHHHHHH-cCCCeEEE
Confidence 489999999999999999999999999 78876543
No 106
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=78.56 E-value=15 Score=29.17 Aligned_cols=16 Identities=25% Similarity=0.293 Sum_probs=12.8
Q ss_pred hhhhhcCeeEEecccc
Q 028841 66 NELAEADGFVFGFPTR 81 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y 81 (203)
+.+.++|.||+++|.+
T Consensus 58 ~~~~~advVil~v~~~ 73 (267)
T PRK11880 58 EAAQEADVVVLAVKPQ 73 (267)
T ss_pred HHHhcCCEEEEEcCHH
Confidence 3467899999999755
No 107
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=77.61 E-value=15 Score=27.90 Aligned_cols=45 Identities=22% Similarity=0.413 Sum_probs=29.5
Q ss_pred EEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecc
Q 028841 5 VYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFP 79 (203)
Q Consensus 5 ilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP 79 (203)
|+||.+. .||+..+++.+.+ .|+++++++. .+++.++|+||+.-|
T Consensus 1 i~i~d~g-~~~~~~~~~~l~~-----~g~~v~v~~~------------------------~~~l~~~d~iiipG~ 45 (198)
T cd01748 1 IAIIDYG-MGNLRSVANALER-----LGAEVIITSD------------------------PEEILSADKLILPGV 45 (198)
T ss_pred CEEEeCC-CChHHHHHHHHHH-----CCCeEEEEcC------------------------hHHhccCCEEEECCC
Confidence 3455433 5677777776654 4677887662 125678999999765
No 108
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=76.76 E-value=24 Score=28.47 Aligned_cols=118 Identities=14% Similarity=0.132 Sum_probs=55.7
Q ss_pred CCceEEEEEcCCcch-HHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecc
Q 028841 1 MATKVYIVYYSMYGH-VEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFP 79 (203)
Q Consensus 1 Mm~kilii~~S~~g~-T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP 79 (203)
||+||.|| |. |+ -..++..++ + .|.++..+|........... ......++ ..+.+.++|.||+..|
T Consensus 1 ~~~~Igvi-G~--G~mG~~~a~~l~----~-~g~~v~~~d~~~~~~~~~~~-~g~~~~~~----~~e~~~~~d~vi~~vp 67 (296)
T PRK11559 1 MTMKVGFI-GL--GIMGKPMSKNLL----K-AGYSLVVYDRNPEAVAEVIA-AGAETAST----AKAVAEQCDVIITMLP 67 (296)
T ss_pred CCceEEEE-cc--CHHHHHHHHHHH----H-CCCeEEEEcCCHHHHHHHHH-CCCeecCC----HHHHHhcCCEEEEeCC
Confidence 66688776 32 22 123455443 3 47778777654322211111 11111111 1345688999999999
Q ss_pred ccCCccHHHHHHHH---HHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCC
Q 028841 80 TRFGMMAAQFKAFL---DATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGY 146 (203)
Q Consensus 80 ~y~~~~~~~~k~~l---d~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~ 146 (203)
.. ..++..+ +.+.. ...+|+.+ ...+... . .+...+.+.+...|..++..++
T Consensus 68 ~~-----~~~~~v~~~~~~~~~----~~~~g~ii---id~st~~--~-~~~~~l~~~~~~~g~~~~d~pv 122 (296)
T PRK11559 68 NS-----PHVKEVALGENGIIE----GAKPGTVV---IDMSSIA--P-LASREIAAALKAKGIEMLDAPV 122 (296)
T ss_pred CH-----HHHHHHHcCcchHhh----cCCCCcEE---EECCCCC--H-HHHHHHHHHHHHcCCcEEEcCC
Confidence 63 3455544 21211 01223332 2222211 1 1234466677777877766553
No 109
>PRK11538 ribosome-associated protein; Provisional
Probab=74.98 E-value=12 Score=25.70 Aligned_cols=48 Identities=10% Similarity=0.064 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCCccHH
Q 028841 16 VEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAA 87 (203)
Q Consensus 16 T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~~~~~ 87 (203)
++.+++.+.+.+.+..+.++.++|+.+.. .-+|.+||+|-.-.-++.+
T Consensus 3 ~~~~~~~i~~~l~dkKa~DI~vlDv~~~~------------------------~~~Dy~VIatg~S~rh~~a 50 (105)
T PRK11538 3 GKALQDFVIDKIDDLKGQDIIALDVQGKS------------------------SITDCMIICTGTSSRHVMS 50 (105)
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEECCCCC------------------------cccCEEEEEEeCCHHHHHH
Confidence 45678888888877567799999998752 2469999998654433333
No 110
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=74.88 E-value=25 Score=27.30 Aligned_cols=47 Identities=19% Similarity=0.273 Sum_probs=27.9
Q ss_pred eEEEEEcCCcchH-HHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEec
Q 028841 4 KVYIVYYSMYGHV-EKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGF 78 (203)
Q Consensus 4 kilii~~S~~g~T-~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigs 78 (203)
||+|+.+.. .|+ ..+.+++.+ . .|.++..+...+ ..+.++|+|||.-
T Consensus 2 ~v~Vl~~~G-~n~~~d~~~a~~~---~-~G~~~~~v~~~~-----------------------~~l~~~D~lvipG 49 (219)
T PRK03619 2 KVAVIVFPG-SNCDRDMARALRD---L-LGAEPEYVWHKE-----------------------TDLDGVDAVVLPG 49 (219)
T ss_pred EEEEEecCC-cChHHHHHHHHHh---c-CCCeEEEEecCc-----------------------CCCCCCCEEEECC
Confidence 788887653 333 335555553 2 466776664322 1467889987774
No 111
>PRK04155 chaperone protein HchA; Provisional
Probab=74.87 E-value=14 Score=30.18 Aligned_cols=39 Identities=10% Similarity=-0.003 Sum_probs=24.1
Q ss_pred ceEEEEEcCC------------cchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 3 TKVYIVYYSM------------YGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 3 ~kilii~~S~------------~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
+|||||..|. +|+-..=+-.-.+.+++ .|++|++..+..
T Consensus 50 kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~-AG~eVdiAS~~G 100 (287)
T PRK04155 50 KKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHK-AGFEFDVATLSG 100 (287)
T ss_pred CeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHH-CCCEEEEEecCC
Confidence 4899988763 23321111222466666 799999998854
No 112
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=74.54 E-value=17 Score=29.48 Aligned_cols=39 Identities=18% Similarity=0.248 Sum_probs=31.5
Q ss_pred eEEEEEcCCc-chHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 4 KVYIVYYSMY-GHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilii~~S~~-g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
||+++..+.. |..++.+..+++.+.+ .|+++.++.....
T Consensus 2 kIl~~~~~~~~gG~~~~~~~l~~~l~~-~G~~v~v~~~~~~ 41 (365)
T cd03825 2 KVLHLNTSDISGGAARAAYRLHRALQA-AGVDSTMLVQEKK 41 (365)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHh-cCCceeEEEeecc
Confidence 8999988754 6677788888888888 7999999887654
No 113
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=74.44 E-value=13 Score=29.00 Aligned_cols=13 Identities=38% Similarity=0.347 Sum_probs=9.9
Q ss_pred hhhhhcCeeEEec
Q 028841 66 NELAEADGFVFGF 78 (203)
Q Consensus 66 ~~l~~aD~iiigs 78 (203)
..+.++|.|.+|-
T Consensus 80 ~~l~~~d~IyVgG 92 (224)
T COG3340 80 NKLMKADIIYVGG 92 (224)
T ss_pred HhhhhccEEEECC
Confidence 3566799999884
No 114
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=74.42 E-value=23 Score=27.56 Aligned_cols=61 Identities=15% Similarity=0.155 Sum_probs=36.4
Q ss_pred HHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEE-eccccCCccH-HHHHHHHHHh
Q 028841 19 LAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVF-GFPTRFGMMA-AQFKAFLDAT 96 (203)
Q Consensus 19 la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iii-gsP~y~~~~~-~~~k~~ld~~ 96 (203)
|-..+++.+++ .|++|++..+.+... . ...+.|.++|+||+ +... ...++ .+.++|.+++
T Consensus 24 ~~~~~~~~L~~-~gf~V~~~~~~d~~~-------------~---~~~~~L~~~D~lV~~~~~~-~~~l~~eq~~~l~~~V 85 (215)
T cd03142 24 MHGTIAAALAE-YGFDVQTATLDEPEH-------------G---LTEEVLAETDVLLWWGHIA-HDEVKDEIVERVHRRV 85 (215)
T ss_pred HHHHHHHHHHh-cCcEEEEEeccCccc-------------c---CCHhHHhcCCEEEEeCCCC-cCcCCHHHHHHHHHHH
Confidence 33445555565 688888665544210 0 11356999999998 3443 34444 4777787777
Q ss_pred c
Q 028841 97 G 97 (203)
Q Consensus 97 ~ 97 (203)
.
T Consensus 86 ~ 86 (215)
T cd03142 86 L 86 (215)
T ss_pred H
Confidence 4
No 115
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=73.89 E-value=14 Score=30.25 Aligned_cols=42 Identities=21% Similarity=0.291 Sum_probs=32.2
Q ss_pred CCceEEEEEcC--CcchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 1 MATKVYIVYYS--MYGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 1 Mm~kilii~~S--~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
||+++.+||-. -.|+-.+..+.+.+.+++ .|.+++.+-....
T Consensus 1 ~~~~~~~i~Np~sG~~~~~~~~~~~~~~l~~-~g~~~~~~~t~~~ 44 (301)
T COG1597 1 RMKKALLIYNPTSGKGKAKKLLREVEELLEE-AGHELSVRVTEEA 44 (301)
T ss_pred CCceEEEEEcccccccchhhHHHHHHHHHHh-cCCeEEEEEeecC
Confidence 56788777754 456788899999999998 7888887776655
No 116
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=73.79 E-value=15 Score=25.50 Aligned_cols=107 Identities=13% Similarity=0.053 Sum_probs=51.8
Q ss_pred ceEEEEEcCCc--chHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 3 TKVYIVYYSMY--GHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 3 ~kilii~~S~~--g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
++|.||=.|.+ ....++.+.+.+ .|.++..++.+...+... .+ ++. ..+.-...|.+++.+|
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~-----~G~~v~~Vnp~~~~i~G~----~~-----y~s-l~e~p~~iDlavv~~~- 64 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKA-----AGYEVYPVNPKGGEILGI----KC-----YPS-LAEIPEPIDLAVVCVP- 64 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHH-----TT-EEEEESTTCSEETTE----E------BSS-GGGCSST-SEEEE-S--
T ss_pred CEEEEEcccCCCCChHHHHHHHHHh-----CCCEEEEECCCceEECcE----Ee-----ecc-ccCCCCCCCEEEEEcC-
Confidence 35677666753 224445555544 476777776554322110 00 000 0111257799999887
Q ss_pred cCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCC
Q 028841 81 RFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 81 y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~ 145 (203)
|..+-.+++.+.. .|-+.++|.++ ... .++.+.+...|+.++|..
T Consensus 65 -----~~~~~~~v~~~~~-------~g~~~v~~~~g-----~~~---~~~~~~a~~~gi~vigp~ 109 (116)
T PF13380_consen 65 -----PDKVPEIVDEAAA-------LGVKAVWLQPG-----AES---EELIEAAREAGIRVIGPN 109 (116)
T ss_dssp -----HHHHHHHHHHHHH-------HT-SEEEE-TT-----S-----HHHHHHHHHTT-EEEESS
T ss_pred -----HHHHHHHHHHHHH-------cCCCEEEEEcc-----hHH---HHHHHHHHHcCCEEEeCC
Confidence 4666677777641 25555555443 111 236677778999999764
No 117
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=72.26 E-value=9.2 Score=29.66 Aligned_cols=25 Identities=20% Similarity=0.114 Sum_probs=18.0
Q ss_pred hhhhhcCeeEEeccccCCccHHHHHHHHHHhc
Q 028841 66 NELAEADGFVFGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~ 97 (203)
..+..+|.|||.||. .++.|++++.
T Consensus 48 ~~~~~~d~iiftS~~-------av~~~~~~~~ 72 (249)
T PRK05928 48 LAALGADWVIFTSKN-------AVEFLLSALK 72 (249)
T ss_pred hhCCCCCEEEEECHH-------HHHHHHHHHH
Confidence 457789999999974 5566666543
No 118
>PRK13054 lipid kinase; Reviewed
Probab=72.17 E-value=17 Score=29.50 Aligned_cols=38 Identities=11% Similarity=-0.021 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQV 40 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l 40 (203)
||+|+++|+-...+ ..+....+.+.+.+ .|.++++...
T Consensus 2 ~~~~~~~i~N~~~~-~~~~~~~~~~~l~~-~g~~~~v~~t 39 (300)
T PRK13054 2 TFPKSLLILNGKSA-GNEELREAVGLLRE-EGHTLHVRVT 39 (300)
T ss_pred CCceEEEEECCCcc-chHHHHHHHHHHHH-cCCEEEEEEe
Confidence 56787776653333 33445556666777 6777776443
No 119
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=71.82 E-value=45 Score=25.96 Aligned_cols=95 Identities=14% Similarity=0.117 Sum_probs=55.5
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
|+.||.+|-...-|. ..+.+.+.+....+.++++.++--.-..-++|.+.. .. ..-+..+.|.||+++|-
T Consensus 1 ~vvkig~ik~GniGt-s~v~dlllDErAdRedi~vrVvgsgaKM~Pe~veaa-------v~--~~~e~~~pDfvi~isPN 70 (277)
T COG1927 1 MVVKIGFIKCGNIGT-SPVVDLLLDERADREDIEVRVVGSGAKMDPECVEAA-------VT--EMLEEFNPDFVIYISPN 70 (277)
T ss_pred CeeEEEEEEecccch-HHHHHHHHHhhcccCCceEEEeccccccChHHHHHH-------HH--HHHHhcCCCEEEEeCCC
Confidence 667888887776664 457777776665557888888766554333333210 00 01233567999999996
Q ss_pred cCCccHHHHHHHHHHhcccccccCCCCCceEEEEe
Q 028841 81 RFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYS 115 (203)
Q Consensus 81 y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t 115 (203)
-..-=|..-+..+. -.+.|+.+++-
T Consensus 71 paaPGP~kARE~l~----------~s~~PaiiigD 95 (277)
T COG1927 71 PAAPGPKKAREILS----------DSDVPAIIIGD 95 (277)
T ss_pred CCCCCchHHHHHHh----------hcCCCEEEecC
Confidence 55433333332222 24788777654
No 120
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=70.62 E-value=13 Score=30.47 Aligned_cols=43 Identities=21% Similarity=0.176 Sum_probs=30.5
Q ss_pred ceEEEEEcCCcc-hHHHHHHHHHHhcccCCCceEEEEEcCCCCcH
Q 028841 3 TKVYIVYYSMYG-HVEKLAEEIKKGASSVEGVEAKLWQVPETLPE 46 (203)
Q Consensus 3 ~kilii~~S~~g-~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~ 46 (203)
+++.||.+|..| +...+++.+.+.+++ .|-++-++-+.+.++.
T Consensus 210 ~~~GIiv~tl~~q~~~~~~~~l~~~l~~-~gkk~y~~~~~~i~~~ 253 (307)
T PF01866_consen 210 KTFGIIVGTLGGQGYLELIKRLKKLLKK-AGKKSYTLSVGEINPA 253 (307)
T ss_dssp -EEEEEEE-STTT--HHHHHHHHHHHHH-TT-EEEEEEESS--GG
T ss_pred CEEEEEEecCCCCCCHHHHHHHHHHHHH-cCCEEEEEEECCCCHH
Confidence 468899998765 567789999999998 7999999999887653
No 121
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=70.58 E-value=38 Score=29.25 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQV 40 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l 40 (203)
||+|+||+..+ .++..+...+++ .|+++..++.
T Consensus 1 ~~kkili~g~g------~~~~~~~~aa~~-lG~~vv~~~~ 33 (449)
T TIGR00514 1 MLDKILIANRG------EIALRILRACKE-LGIKTVAVHS 33 (449)
T ss_pred CcceEEEeCCC------HHHHHHHHHHHH-cCCeEEEEEC
Confidence 88999998544 245555666666 6888888765
No 122
>PRK05665 amidotransferase; Provisional
Probab=70.49 E-value=35 Score=26.98 Aligned_cols=18 Identities=11% Similarity=0.036 Sum_probs=11.2
Q ss_pred hhhhcCeeEE-eccccCCc
Q 028841 67 ELAEADGFVF-GFPTRFGM 84 (203)
Q Consensus 67 ~l~~aD~iii-gsP~y~~~ 84 (203)
.+..+|+||+ |+|--.+.
T Consensus 54 ~~~~~dgiiitGs~~~v~~ 72 (240)
T PRK05665 54 DDEKFDAYLVTGSKADSFG 72 (240)
T ss_pred CcccCCEEEECCCCCCccc
Confidence 3567898865 56654443
No 123
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=69.56 E-value=20 Score=26.83 Aligned_cols=54 Identities=17% Similarity=0.156 Sum_probs=29.1
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEec
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGF 78 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigs 78 (203)
||+|+..+.........+.+.+ +.. ...++++++..+... ..++..+|+||+.-
T Consensus 1 ~i~il~~~~~~~~~~~~~~l~~-~g~-~~~~~~~~~~~~~~~-------------------~~~~~~~dgvil~G 54 (188)
T cd01741 1 RILILQHDTPEGPGLFEDLLRE-AGA-ETIEIDVVDVYAGEL-------------------LPDLDDYDGLVILG 54 (188)
T ss_pred CEEEEECCCCCCcchHHHHHHh-cCC-CCceEEEEecCCCCC-------------------CCCcccCCEEEECC
Confidence 5778877643222223333332 111 125777777665321 13578899998874
No 124
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=69.42 E-value=31 Score=26.23 Aligned_cols=48 Identities=17% Similarity=0.371 Sum_probs=27.6
Q ss_pred eEEEE--EcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEec
Q 028841 4 KVYIV--YYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGF 78 (203)
Q Consensus 4 kilii--~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigs 78 (203)
||.++ .++.......+.+ .++. .|.+++++++.+ .+.+.++|+|||.-
T Consensus 2 ~i~vl~~~~~~~e~~~~~~~----~l~~-~g~~~~~~~~~~----------------------~~~l~~~d~iii~G 51 (200)
T PRK13527 2 KIGVLALQGDVEEHIDALKR----ALDE-LGIDGEVVEVRR----------------------PGDLPDCDALIIPG 51 (200)
T ss_pred EEEEEEECCccHHHHHHHHH----HHHh-cCCCeEEEEeCC----------------------hHHhccCCEEEECC
Confidence 55444 4444333333334 3444 467788777653 23577899998874
No 125
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=69.41 E-value=22 Score=26.96 Aligned_cols=46 Identities=22% Similarity=0.335 Sum_probs=29.0
Q ss_pred EEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 6 YIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 6 lii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
+++.++..||-..+...+ +. .|+++++++..+ ++.++|+|||+-..
T Consensus 2 ~~~~y~~~gN~~~l~~~~----~~-~G~~~~~~~~~~------------------------~~~~~d~lilpGg~ 47 (194)
T cd01750 2 AVIRYPDISNFTDLDPLA----RE-PGVDVRYVEVPE------------------------GLGDADLIILPGSK 47 (194)
T ss_pred EeecCCCccCHHHHHHHH----hc-CCceEEEEeCCC------------------------CCCCCCEEEECCCc
Confidence 455566577875544333 33 577888887542 25678999887554
No 126
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=69.06 E-value=37 Score=29.25 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
||+||||+..+. ++..+.+.+++ .|+++..++..
T Consensus 1 ~~k~iLi~g~g~------~a~~i~~aa~~-~G~~vv~~~~~ 34 (451)
T PRK08591 1 MFDKILIANRGE------IALRIIRACKE-LGIKTVAVHST 34 (451)
T ss_pred CcceEEEECCCH------HHHHHHHHHHH-cCCeEEEEcCh
Confidence 889999986553 34455556666 58877766443
No 127
>PRK10125 putative glycosyl transferase; Provisional
Probab=69.01 E-value=14 Score=31.62 Aligned_cols=39 Identities=10% Similarity=0.097 Sum_probs=33.8
Q ss_pred eEEEEEcC-CcchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 4 KVYIVYYS-MYGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilii~~S-~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
|||-|+.+ ..|.+++++..+++.+.+ .|+++.++-.+..
T Consensus 2 kil~i~~~l~~GGaeri~~~L~~~l~~-~G~~~~i~~~~~~ 41 (405)
T PRK10125 2 NILQFNVRLAEGGAAGVALDLHQRALQ-QGLASHFVYGYGK 41 (405)
T ss_pred eEEEEEeeecCCchhHHHHHHHHHHHh-cCCeEEEEEecCC
Confidence 89888866 578899999999999988 7999999888764
No 128
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=68.39 E-value=22 Score=31.76 Aligned_cols=46 Identities=26% Similarity=0.439 Sum_probs=31.9
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEec
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGF 78 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigs 78 (203)
++|+||.+. .||...+++++.+ .|+++.+++. .+++.++|+||+.-
T Consensus 7 ~~i~iiDyG-~GN~~sl~~al~~-----~G~~v~~v~~------------------------~~~l~~~D~lIlpG 52 (538)
T PLN02617 7 SEVTLLDYG-AGNVRSVRNAIRH-----LGFTIKDVQT------------------------PEDILNADRLIFPG 52 (538)
T ss_pred CeEEEEECC-CCCHHHHHHHHHH-----CCCeEEEECC------------------------hhhhccCCEEEECC
Confidence 577777665 6788888888765 3666665531 23578999999964
No 129
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=68.35 E-value=64 Score=26.31 Aligned_cols=106 Identities=15% Similarity=0.018 Sum_probs=57.5
Q ss_pred cchHHHHHHHHHHhcccCCCceEEEEEcCCCC-cHHHhccCCCCCCCCCCCCChhhhhh---cCeeEEeccccCCccHHH
Q 028841 13 YGHVEKLAEEIKKGASSVEGVEAKLWQVPETL-PEEVLGKMSAPPKSDVPIITPNELAE---ADGFVFGFPTRFGMMAAQ 88 (203)
Q Consensus 13 ~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~-~~~~~~~~~~~~~~d~~~~~~~~l~~---aD~iiigsP~y~~~~~~~ 88 (203)
.|-|.+++..+.+.+.. .|.. .+..+.... ...+. ...|.+ ..+++.+ -|..|+..| +..
T Consensus 12 ~g~~~~~~~~~~~~~~~-~g~~-~v~~V~p~~~~~~v~-G~~~y~-------sv~dlp~~~~~Dlavi~vp------a~~ 75 (286)
T TIGR01019 12 QGITGSQGSFHTEQMLA-YGTN-IVGGVTPGKGGTTVL-GLPVFD-------SVKEAVEETGANASVIFVP------APF 75 (286)
T ss_pred ecCCcHHHHHHHHHHHh-CCCC-EEEEECCCCCcceec-CeeccC-------CHHHHhhccCCCEEEEecC------HHH
Confidence 35556666666666655 4655 344443220 00000 001111 1344544 599999988 344
Q ss_pred HHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCC
Q 028841 89 FKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 89 ~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~ 145 (203)
+...++.+. -+|-+.+++.++|..- . ...++.+.....|+.++|+.
T Consensus 76 v~~~l~e~~-------~~Gvk~avIis~Gf~e-~---~~~~l~~~a~~~girilGPN 121 (286)
T TIGR01019 76 AADAIFEAI-------DAGIELIVCITEGIPV-H---DMLKVKRYMEESGTRLIGPN 121 (286)
T ss_pred HHHHHHHHH-------HCCCCEEEEECCCCCH-H---HHHHHHHHHHHcCCEEECCC
Confidence 445555553 2566677777766421 1 12456777778899999976
No 130
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=68.29 E-value=29 Score=28.08 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=29.3
Q ss_pred eEEEEEcCC---cchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 4 KVYIVYYSM---YGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilii~~S~---~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
||.|++|.. +.-+-+-++.+.+.+++ .|+++.+++..+
T Consensus 2 ~v~v~~gg~s~e~~~sl~s~~~i~~al~~-~g~~~~~i~~~~ 42 (299)
T PRK14571 2 RVALLMGGVSREREISLRSGERVKKALEK-LGYEVTVFDVDE 42 (299)
T ss_pred eEEEEeCCCCCCccchHHHHHHHHHHHHH-cCCeEEEEccCc
Confidence 899999853 34466677888888888 799999998654
No 131
>PRK11914 diacylglycerol kinase; Reviewed
Probab=68.10 E-value=16 Score=29.82 Aligned_cols=39 Identities=18% Similarity=0.059 Sum_probs=27.5
Q ss_pred CceEEEEEcC--CcchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 2 ATKVYIVYYS--MYGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 2 m~kilii~~S--~~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
|+|+++|+-. .+|...+..+.+.+.+++ .|.++.++...
T Consensus 8 ~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~-~g~~~~~~~t~ 48 (306)
T PRK11914 8 IGKVTVLTNPLSGHGAAPHAAERAIARLHH-RGVDVVEIVGT 48 (306)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHH-cCCeEEEEEeC
Confidence 4588888754 456677788888888887 68777765443
No 132
>PRK13059 putative lipid kinase; Reviewed
Probab=67.95 E-value=26 Score=28.44 Aligned_cols=39 Identities=10% Similarity=0.125 Sum_probs=26.8
Q ss_pred ceEEEEEcC--CcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 3 TKVYIVYYS--MYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 3 ~kilii~~S--~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
+|+++|+-. ..|...+..+.+.+.+.+ .|.++.++....
T Consensus 2 ~~~~~I~NP~aG~g~~~~~~~~i~~~l~~-~g~~~~~~~~~~ 42 (295)
T PRK13059 2 KKVKFIYNPYSGENAIISELDKVIRIHQE-KGYLVVPYRISL 42 (295)
T ss_pred cEEEEEECCcccchhHHHHHHHHHHHHHH-CCcEEEEEEccC
Confidence 477776643 445556777888888887 688877766644
No 133
>PRK00861 putative lipid kinase; Reviewed
Probab=67.79 E-value=26 Score=28.41 Aligned_cols=40 Identities=10% Similarity=0.194 Sum_probs=25.2
Q ss_pred CCceEEEEEcCC--cchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 1 MATKVYIVYYSM--YGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 1 Mm~kilii~~S~--~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
||+++++|+-.. .|...+..+.+...+.+ +.+++++....
T Consensus 1 ~~~~~~iI~NP~sG~~~~~~~~~~i~~~l~~--~~~~~~~~t~~ 42 (300)
T PRK00861 1 MTRSACLIFNPVAGQGNPEVDLALIRAILEP--EMDLDIYLTTP 42 (300)
T ss_pred CCceEEEEECCCCCCCchhhhHHHHHHHHHh--cCceEEEEccC
Confidence 788988887644 44555566777777765 35666655433
No 134
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=67.69 E-value=11 Score=31.47 Aligned_cols=39 Identities=13% Similarity=0.147 Sum_probs=28.3
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCce-EEEEEcCC
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVE-AKLWQVPE 42 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~-v~~~~l~~ 42 (203)
+||||+++|..+--...|+++++.+++ .|.+ +.+.|...
T Consensus 5 ~rili~t~~~G~GH~~~a~al~~~l~~-~g~~~~~~~d~~~ 44 (380)
T PRK13609 5 PKVLILTAHYGNGHVQVAKTLEQTFRQ-KGIKDVIVCDLFG 44 (380)
T ss_pred CeEEEEEcCCCchHHHHHHHHHHHHHh-cCCCcEEEEEhHH
Confidence 589999988653345678899999987 5765 55666653
No 135
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain. Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.
Probab=67.14 E-value=16 Score=30.41 Aligned_cols=43 Identities=23% Similarity=0.250 Sum_probs=36.0
Q ss_pred ceEEEEEcCCcc-hHHHHHHHHHHhcccCCCceEEEEEcCCCCcH
Q 028841 3 TKVYIVYYSMYG-HVEKLAEEIKKGASSVEGVEAKLWQVPETLPE 46 (203)
Q Consensus 3 ~kilii~~S~~g-~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~ 46 (203)
+++.||.+|..| ++..+++.+.+.+++ .|.++.++-+.+.++.
T Consensus 233 ~~vGIlvgTl~~q~~~~~~~~l~~ll~~-~gkk~y~i~~~~in~~ 276 (332)
T TIGR00322 233 KKFGVVLSSKGGQGRLRLAKNLKKNLEE-AGKTVLIILLSNVSPA 276 (332)
T ss_pred CEEEEEEecCccCCCHHHHHHHHHHHHH-cCCcEEEEEeCCCCHH
Confidence 468899999765 678899999999998 7999999999887653
No 136
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=67.13 E-value=84 Score=27.20 Aligned_cols=50 Identities=18% Similarity=-0.011 Sum_probs=32.1
Q ss_pred hhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCC
Q 028841 66 NELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGG 121 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~ 121 (203)
..+.++|++|.+.--.+....+. +.|+-.+. ..+.|||+.+++.+=++..
T Consensus 113 ~~l~~aDlvI~gGG~lfqD~y~~-~~~~y~l~-----A~l~gkpv~l~gqsiGPf~ 162 (426)
T PRK10017 113 RLLSGYDAIIQVGGSFFVDLYGV-PQFEHALC-----AFMAKKPLYMIGHSVGPFQ 162 (426)
T ss_pred HHHHhCCEEEECCCCccccCccc-HHHHHHHH-----HHHcCCCEEEECCcCCCcC
Confidence 46899999999987777654432 23321111 1367999998887655543
No 137
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=65.78 E-value=29 Score=26.41 Aligned_cols=45 Identities=24% Similarity=0.500 Sum_probs=29.1
Q ss_pred EEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecc
Q 028841 5 VYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFP 79 (203)
Q Consensus 5 ilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP 79 (203)
|+|+-.. .+|...+++.+.+ .|++++++. + .+++.++|+||+.-|
T Consensus 2 i~~~d~~-~~~~~~i~~~l~~-----~G~~v~~~~--~----------------------~~~l~~~d~iiipG~ 46 (205)
T PRK13141 2 IAIIDYG-MGNLRSVEKALER-----LGAEAVITS--D----------------------PEEILAADGVILPGV 46 (205)
T ss_pred EEEEEcC-CchHHHHHHHHHH-----CCCeEEEEC--C----------------------HHHhccCCEEEECCC
Confidence 5666444 5677667666654 466777753 1 236788999999653
No 138
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=65.09 E-value=46 Score=24.77 Aligned_cols=104 Identities=16% Similarity=0.102 Sum_probs=51.4
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCC-CCCCCCCCChhhhhhcCeeEEecc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAP-PKSDVPIITPNELAEADGFVFGFP 79 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~-~~~d~~~~~~~~l~~aD~iiigsP 79 (203)
|++|++|+.....-..+.+ .-.+.+++ .|.++++......... ........ ..++.... ..+..++|+|++---
T Consensus 1 ~~~~i~i~~~~g~e~~E~~--~p~~~l~~-ag~~v~~~~~~~~~~~-~~~~~g~~~~~~~~~~~-~~~~~~ydal~ipGG 75 (188)
T COG0693 1 MMKKIAILLADGFEDLELI--VPYDVLRR-AGFEVDVASPEGKGKS-VTSKRGGLVVADDKAFD-DADAADYDALVIPGG 75 (188)
T ss_pred CCceeEEEecCcceehhHh--HHHHHHHH-CCCeEEEEecCCCcce-eecccCcceEecccccc-cCCHhHCCEEEECCC
Confidence 5668887665543333332 22355555 5778887777653100 00000000 01111000 112569999988655
Q ss_pred ccC-Cc-cH-HHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 80 TRF-GM-MA-AQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 80 ~y~-~~-~~-~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
.++ .. .+ ..+..|+.++. -.||+++.+|++
T Consensus 76 ~~~~~~~~~~~~~~~~v~~~~-------~~~k~vaaIC~g 108 (188)
T COG0693 76 DHGPEYLRPDPDLLAFVRDFY-------ANGKPVAAICHG 108 (188)
T ss_pred ccchhhccCcHHHHHHHHHHH-------HcCCEEEEEChh
Confidence 322 11 11 45666666653 358888888765
No 139
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=64.94 E-value=43 Score=26.42 Aligned_cols=58 Identities=26% Similarity=0.305 Sum_probs=36.6
Q ss_pred HHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCC--CChhhhhhcCeeEEeccccCCccHHHHHHHHHHhc
Q 028841 21 EEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPI--ITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 21 ~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~--~~~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~ 97 (203)
+.+.+.+.+ .|++++.+++++..+. ..+ +. .........|.|+|.|| ...++|++.+.
T Consensus 136 ~~l~~~L~~-~G~~v~~~~~Y~~~~~----------~~~-~~~~~~~~~~~~~d~v~ftS~-------~~v~~~~~~~~ 195 (248)
T COG1587 136 EVLEEKLEE-RGAEVREVEVYRTEPP----------PLD-EATLIELLKLGEVDAVVFTSS-------SAVRALLALAP 195 (248)
T ss_pred HHHHHHHHh-CCCEEEEEeeeeecCC----------Ccc-HHHHHHHHHhCCCCEEEEeCH-------HHHHHHHHHcc
Confidence 455566666 6888887777665321 001 00 01345678999999987 46788888775
No 140
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=64.93 E-value=82 Score=26.30 Aligned_cols=80 Identities=23% Similarity=0.346 Sum_probs=43.2
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCC---CCCCCCCCC------CChhhhhhcCee
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMS---APPKSDVPI------ITPNELAEADGF 74 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~---~~~~~d~~~------~~~~~l~~aD~i 74 (203)
||.|+=+-..|++ +|..+++ +|.+|.+.--++....++..... .-|.-.+|. ...+.++.+|.|
T Consensus 3 kI~ViGaGswGTA--LA~~la~-----ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~i 75 (329)
T COG0240 3 KIAVIGAGSWGTA--LAKVLAR-----NGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADII 75 (329)
T ss_pred eEEEEcCChHHHH--HHHHHHh-----cCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEE
Confidence 7887655456753 5666655 56678777654332222222110 001111111 124456679999
Q ss_pred EEeccccCCccHHHHHHHHHHh
Q 028841 75 VFGFPTRFGMMAAQFKAFLDAT 96 (203)
Q Consensus 75 iigsP~y~~~~~~~~k~~ld~~ 96 (203)
|++.|.+. ++..++++
T Consensus 76 v~avPs~~------~r~v~~~l 91 (329)
T COG0240 76 VIAVPSQA------LREVLRQL 91 (329)
T ss_pred EEECChHH------HHHHHHHH
Confidence 99999864 55666665
No 141
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=64.78 E-value=60 Score=24.66 Aligned_cols=61 Identities=20% Similarity=0.278 Sum_probs=42.0
Q ss_pred CceEEEEEc----CCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEe
Q 028841 2 ATKVYIVYY----SMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFG 77 (203)
Q Consensus 2 m~kilii~~----S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiig 77 (203)
|+||.||=. +.+|--|..++.+...+.+ .|+++++.-..+.... ....-..++.+-+.
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~-~g~~v~Vyc~~~~~~~-----------------~~~~y~gv~l~~i~ 62 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVS-KGIDVTVYCRSDYYPY-----------------KEFEYNGVRLVYIP 62 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhc-CCceEEEEEccCCCCC-----------------CCcccCCeEEEEeC
Confidence 667777532 2378889999999999988 7999998866543210 01234567777777
Q ss_pred ccc
Q 028841 78 FPT 80 (203)
Q Consensus 78 sP~ 80 (203)
+|.
T Consensus 63 ~~~ 65 (185)
T PF09314_consen 63 APK 65 (185)
T ss_pred CCC
Confidence 775
No 142
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=64.74 E-value=37 Score=27.62 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=17.6
Q ss_pred hhhhhcCeeEEeccccCCccHHHHHHHHHHh
Q 028841 66 NELAEADGFVFGFPTRFGMMAAQFKAFLDAT 96 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~ 96 (203)
+.+..+|.||+..|.+ .++..++.+
T Consensus 67 ~~~~~~D~vi~~v~~~------~~~~v~~~l 91 (325)
T PRK00094 67 EALADADLILVAVPSQ------ALREVLKQL 91 (325)
T ss_pred HHHhCCCEEEEeCCHH------HHHHHHHHH
Confidence 3567899999999974 345555554
No 143
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=64.49 E-value=13 Score=30.49 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=28.9
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEE
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQ 39 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~ 39 (203)
|+|+++|+-+..+.+..+++.+.+.+++ .|+++.+..
T Consensus 3 ~kkv~lI~n~~~~~~~~~~~~i~~~L~~-~g~~v~v~~ 39 (305)
T PRK02645 3 LKQVIIAYKAGSSQAKEAAERCAKQLEA-RGCKVLMGP 39 (305)
T ss_pred cCEEEEEEeCCCHHHHHHHHHHHHHHHH-CCCEEEEec
Confidence 4679999887666777888888888877 688877654
No 144
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=64.03 E-value=22 Score=27.03 Aligned_cols=44 Identities=20% Similarity=0.303 Sum_probs=29.1
Q ss_pred EEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecc
Q 028841 6 YIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFP 79 (203)
Q Consensus 6 lii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP 79 (203)
+||..- .||...+++.+.+ .|++++++.- .++++++|+||+.-|
T Consensus 2 ~~~~~~-~gn~~~l~~~l~~-----~g~~v~v~~~------------------------~~~l~~~d~lii~G~ 45 (196)
T TIGR01855 2 VIIDYG-VGNLGSVKRALKR-----VGAEPVVVKD------------------------SKEAELADKLILPGV 45 (196)
T ss_pred EEEecC-CcHHHHHHHHHHH-----CCCcEEEEcC------------------------HHHhccCCEEEECCC
Confidence 444432 5788888877764 3667777651 135678999999764
No 145
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=63.99 E-value=79 Score=25.80 Aligned_cols=39 Identities=13% Similarity=0.130 Sum_probs=30.2
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
+..+|.......+..-++...+.+++ .|++++++.+.+.
T Consensus 35 ~Laii~vg~d~as~~Yv~~k~k~~~~-~Gi~~~~~~l~~~ 73 (284)
T PRK14177 35 KLATILVGNNPASETYVSMKVKACHK-VGMGSEMIRLKEQ 73 (284)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 45666666666677788888888888 7999999999765
No 146
>PRK15005 universal stress protein F; Provisional
Probab=63.62 E-value=16 Score=25.70 Aligned_cols=41 Identities=12% Similarity=0.165 Sum_probs=27.9
Q ss_pred CCceEEEEE-cCCcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 1 MATKVYIVY-YSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 1 Mm~kilii~-~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
|+++||+-+ +|..+.+.++++...+.+.. .+.++.++.+-+
T Consensus 1 m~~~ILv~~D~s~~~~~~~a~~~a~~la~~-~~~~l~ll~v~~ 42 (144)
T PRK15005 1 MNRTILVPIDISDSELTQRVISHVEAEAKI-DDAEVHFLTVIP 42 (144)
T ss_pred CCccEEEecCCCchhHHHHHHHHHHHHHhc-cCCeEEEEEEEc
Confidence 778888776 57665566777665555554 566888777754
No 147
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=63.36 E-value=21 Score=22.47 Aligned_cols=37 Identities=16% Similarity=0.328 Sum_probs=28.4
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
+|-+ +++.-.+...+.+.+.+.+.+ .|.++++++..+
T Consensus 2 ~I~v-~~~~C~~C~~~~~~~~~~~~~-~~i~~ei~~~~~ 38 (76)
T PF13192_consen 2 KIKV-FSPGCPYCPELVQLLKEAAEE-LGIEVEIIDIED 38 (76)
T ss_dssp EEEE-ECSSCTTHHHHHHHHHHHHHH-TTEEEEEEETTT
T ss_pred EEEE-eCCCCCCcHHHHHHHHHHHHh-cCCeEEEEEccC
Confidence 6777 666667777888888888777 678999999743
No 148
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=63.31 E-value=17 Score=29.53 Aligned_cols=63 Identities=10% Similarity=0.155 Sum_probs=34.6
Q ss_pred HHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCC-CChhhhhhcCeeEEeccccC
Q 028841 18 KLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPI-ITPNELAEADGFVFGFPTRF 82 (203)
Q Consensus 18 ~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~-~~~~~l~~aD~iiigsP~y~ 82 (203)
.|...++..+++ .|..+.++........ +.....-...++... ...+...++|.||+++|+..
T Consensus 13 liG~s~a~~l~~-~g~~v~i~g~d~~~~~-~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~ 76 (279)
T COG0287 13 LMGGSLARALKE-AGLVVRIIGRDRSAAT-LKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEA 76 (279)
T ss_pred hHHHHHHHHHHH-cCCeEEEEeecCcHHH-HHHHhhcCcccccccchhhhhcccCCEEEEeccHHH
Confidence 466677777777 6888888877553211 100000000011000 01356778999999999864
No 149
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=63.05 E-value=65 Score=24.87 Aligned_cols=54 Identities=22% Similarity=0.351 Sum_probs=31.9
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEe-cc
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFG-FP 79 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiig-sP 79 (203)
+|+++.... ..|..+.+.+.+ .|+++++++.....+.+ ..+.+..+|+|||. .|
T Consensus 2 ~ilv~d~~~-~~~~~~~~~l~~-----~G~~~~~~~~~~~~~~~----------------~~~~~~~~dgliisGGp 56 (214)
T PRK07765 2 RILVVDNYD-SFVFNLVQYLGQ-----LGVEAEVWRNDDPRLAD----------------EAAVAAQFDGVLLSPGP 56 (214)
T ss_pred eEEEEECCC-cHHHHHHHHHHH-----cCCcEEEEECCCcCHHH----------------HHHhhcCCCEEEECCCC
Confidence 688887664 445556665544 46788888765421110 01235679999884 44
No 150
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=62.74 E-value=46 Score=24.27 Aligned_cols=118 Identities=14% Similarity=0.148 Sum_probs=61.3
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccC
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRF 82 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~ 82 (203)
+||.+|=.- .|...+++.+.+ .|+++..+|......+...+.. ....+ ...+.+.++|.|++..|-
T Consensus 2 ~~Ig~IGlG------~mG~~~a~~L~~-~g~~v~~~d~~~~~~~~~~~~g-~~~~~----s~~e~~~~~dvvi~~v~~-- 67 (163)
T PF03446_consen 2 MKIGFIGLG------NMGSAMARNLAK-AGYEVTVYDRSPEKAEALAEAG-AEVAD----SPAEAAEQADVVILCVPD-- 67 (163)
T ss_dssp BEEEEE--S------HHHHHHHHHHHH-TTTEEEEEESSHHHHHHHHHTT-EEEES----SHHHHHHHBSEEEE-SSS--
T ss_pred CEEEEEchH------HHHHHHHHHHHh-cCCeEEeeccchhhhhhhHHhh-hhhhh----hhhhHhhcccceEeeccc--
Confidence 488776322 233334444444 6889999986543222222110 00000 114567888999998774
Q ss_pred CccHHHHHHHHHH--hcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCc
Q 028841 83 GMMAAQFKAFLDA--TGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYT 147 (203)
Q Consensus 83 ~~~~~~~k~~ld~--~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~ 147 (203)
+..++..++. +.. ...+|+.+.-.+|. ..+. ..++.+.+...|..++..++.
T Consensus 68 ---~~~v~~v~~~~~i~~----~l~~g~iiid~sT~-----~p~~-~~~~~~~~~~~g~~~vdapV~ 121 (163)
T PF03446_consen 68 ---DDAVEAVLFGENILA----GLRPGKIIIDMSTI-----SPET-SRELAERLAAKGVRYVDAPVS 121 (163)
T ss_dssp ---HHHHHHHHHCTTHGG----GS-TTEEEEE-SS-------HHH-HHHHHHHHHHTTEEEEEEEEE
T ss_pred ---chhhhhhhhhhHHhh----ccccceEEEecCCc-----chhh-hhhhhhhhhhccceeeeeeee
Confidence 3567777776 321 12345554433332 1222 455778888889999877654
No 151
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=62.32 E-value=40 Score=23.77 Aligned_cols=100 Identities=14% Similarity=-0.008 Sum_probs=48.6
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccC
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRF 82 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~ 82 (203)
+||.|+.... ....-+..+.+.+.. .|.++.++............ ..-.+...+.+ ....++|+||+.....+
T Consensus 2 ~~v~ill~~g--~~~~e~~~~~~~~~~-a~~~v~vvs~~~~~v~s~~g-~~i~~~~~l~~---~~~~~~D~liVpGg~~~ 74 (142)
T cd03132 2 RKVGILVADG--VDAAELSALKAALKA-AGANVKVVAPTLGGVVDSDG-KTLEVDQTYAG---APSVLFDAVVVPGGAEA 74 (142)
T ss_pred CEEEEEEcCC--cCHHHHHHHHHHHHH-CCCEEEEEecCcCceecCCC-cEEecceeecC---CChhhcCEEEECCCccC
Confidence 4777776543 222224455566665 57888888875432110000 00001111111 12236899887653221
Q ss_pred C---ccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 83 G---MMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 83 ~---~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
. ...+.+..||.+.. -.+|+++.++++
T Consensus 75 ~~~~~~~~~l~~~l~~~~-------~~~~~I~aic~G 104 (142)
T cd03132 75 AFALAPSGRALHFVTEAF-------KHGKPIGAVGEG 104 (142)
T ss_pred HHHHccChHHHHHHHHHH-------hcCCeEEEcCch
Confidence 1 12345666665542 368888776663
No 152
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=62.30 E-value=73 Score=24.79 Aligned_cols=58 Identities=21% Similarity=0.314 Sum_probs=37.8
Q ss_pred ceEEEEEcCC--------cchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCee
Q 028841 3 TKVYIVYYSM--------YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGF 74 (203)
Q Consensus 3 ~kilii~~S~--------~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~i 74 (203)
++++++++.. +|+ -++.+...+++ .|...+++.+-+-. +|. .+++..+|++
T Consensus 5 kr~Alf~at~dsefvk~~yGg---y~nvfvsllg~-ege~wd~frV~~ge---------------fP~--~~Dl~ky~gf 63 (245)
T KOG3179|consen 5 KRIALFLATPDSEFVKKAYGG---YFNVFVSLLGD-EGEQWDLFRVIDGE---------------FPQ--EEDLEKYDGF 63 (245)
T ss_pred eeEEEEecCCchhhhhhhhcC---HHHHHHHHhcc-cCceeEEEEEecCC---------------CCC--hhhhhhhceE
Confidence 6788988864 343 24445566666 57778887775532 222 4678899999
Q ss_pred EEecccc
Q 028841 75 VFGFPTR 81 (203)
Q Consensus 75 iigsP~y 81 (203)
||.-.-|
T Consensus 64 vIsGS~~ 70 (245)
T KOG3179|consen 64 VISGSKH 70 (245)
T ss_pred EEeCCcc
Confidence 8875555
No 153
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=62.24 E-value=42 Score=26.79 Aligned_cols=13 Identities=15% Similarity=0.317 Sum_probs=10.8
Q ss_pred hhhhhcCeeEEec
Q 028841 66 NELAEADGFVFGF 78 (203)
Q Consensus 66 ~~l~~aD~iiigs 78 (203)
+++.++|+|||.-
T Consensus 34 ~~L~~~DgLILPG 46 (248)
T PLN02832 34 EQLEGVSGLIIPG 46 (248)
T ss_pred HHhccCCEEEeCC
Confidence 4678999999976
No 154
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=62.24 E-value=86 Score=25.60 Aligned_cols=110 Identities=17% Similarity=0.258 Sum_probs=60.2
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHH-Hh---ccC-C----------CCCCCCCCC--C--C
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEE-VL---GKM-S----------APPKSDVPI--I--T 64 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~-~~---~~~-~----------~~~~~d~~~--~--~ 64 (203)
+..+|......-+..-++...+.+++ .|++++.+++.+.-.++ ++ ... . -|..+++.+ . .
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~~~~-~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivqlPlp~~i~~~~i~~~ 112 (284)
T PRK14179 34 GLVVILVGDNPASQVYVRNKERSALA-AGFKSEVVRLPETISQEELLDLIERYNQDPTWHGILVQLPLPKHINEEKILLA 112 (284)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHH-cCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhc
Confidence 45666665555666778888888888 79999999998653222 11 110 0 000001100 0 0
Q ss_pred hhhhhhcCee--------EEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCC
Q 028841 65 PNELAEADGF--------VFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQ 119 (203)
Q Consensus 65 ~~~l~~aD~i--------iigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~ 119 (203)
....++-|++ ..+.|.+.-.-|..+-.+|++.. -.+.||.+++++.++-.
T Consensus 113 I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~avi~lL~~~~-----i~l~Gk~v~vIG~S~iv 170 (284)
T PRK14179 113 IDPKKDVDGFHPMNTGHLWSGRPVMIPCTPAGIMEMFREYN-----VELEGKHAVVIGRSNIV 170 (284)
T ss_pred cCccccccccCHhhHHHHhCCCCCCcCCCHHHHHHHHHHhC-----CCCCCCEEEEECCCCcC
Confidence 1122334443 23344444445555666666543 25899999999886654
No 155
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=62.21 E-value=8.3 Score=31.63 Aligned_cols=37 Identities=30% Similarity=0.434 Sum_probs=31.3
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
||+++..+..|-.+..+..+++.+.+ .|.+|+++...
T Consensus 2 ki~~~~~p~~gG~~~~~~~la~~L~~-~G~~v~v~~~~ 38 (371)
T cd04962 2 KIGIVCYPTYGGSGVVATELGKALAR-RGHEVHFITSS 38 (371)
T ss_pred ceeEEEEeCCCCccchHHHHHHHHHh-cCCceEEEecC
Confidence 89998877777778889999999998 79999988654
No 156
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=62.00 E-value=19 Score=30.49 Aligned_cols=56 Identities=18% Similarity=0.162 Sum_probs=33.5
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccC
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRF 82 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~ 82 (203)
++|.||-+.. .|...++..+.+ .|.++.+++..+... ..+.+.++|.||+++|+..
T Consensus 99 ~~I~IiGG~G-----lmG~slA~~l~~-~G~~V~~~d~~~~~~------------------~~~~~~~aDlVilavP~~~ 154 (374)
T PRK11199 99 RPVVIVGGKG-----QLGRLFAKMLTL-SGYQVRILEQDDWDR------------------AEDILADAGMVIVSVPIHL 154 (374)
T ss_pred ceEEEEcCCC-----hhhHHHHHHHHH-CCCeEEEeCCCcchh------------------HHHHHhcCCEEEEeCcHHH
Confidence 4677654231 233344444444 577888888643210 1235678999999999874
No 157
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=61.95 E-value=12 Score=30.92 Aligned_cols=39 Identities=21% Similarity=0.148 Sum_probs=27.4
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
|| ||+|+.+...|... .+-.+++.+.+ .|+++.++-...
T Consensus 1 ~~-~i~i~~~g~gG~~~-~~~~la~~L~~-~g~ev~vv~~~~ 39 (357)
T PRK00726 1 MK-KILLAGGGTGGHVF-PALALAEELKK-RGWEVLYLGTAR 39 (357)
T ss_pred Cc-EEEEEcCcchHhhh-HHHHHHHHHHh-CCCEEEEEECCC
Confidence 65 88887765567665 55566677776 688998886544
No 158
>PRK06444 prephenate dehydrogenase; Provisional
Probab=61.67 E-value=13 Score=28.50 Aligned_cols=27 Identities=11% Similarity=0.060 Sum_probs=17.5
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEE
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAK 36 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~ 36 (203)
|+.||=++ -+|.+.++..+++ .|++|.
T Consensus 2 ~~~iiG~~-----G~mG~~~~~~~~~-~g~~v~ 28 (197)
T PRK06444 2 MEIIIGKN-----GRLGRVLCSILDD-NGLGVY 28 (197)
T ss_pred EEEEEecC-----CcHHHHHHHHHHh-CCCEEE
Confidence 67776543 3466677777776 677664
No 159
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=61.40 E-value=52 Score=22.79 Aligned_cols=77 Identities=21% Similarity=0.245 Sum_probs=44.0
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCc-HHHhccCCCCCCCCCCCCChhhhhhcCeeEEecccc
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLP-EEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR 81 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~-~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y 81 (203)
++..+|.......+..-++...+.+++ .|++++.+.+.+... .++.... .....=.+-|+|++-.|..
T Consensus 30 P~Laii~vg~d~~S~~Y~~~k~k~~~~-~Gi~~~~~~l~~~~~~~el~~~i----------~~lN~D~~V~GIlvq~PLP 98 (117)
T PF00763_consen 30 PKLAIILVGDDPASISYVRSKQKAAEK-LGIEFELIELPEDISEEELLELI----------EKLNEDPSVHGILVQLPLP 98 (117)
T ss_dssp -EEEEEEES--HHHHHHHHHHHHHHHH-HT-EEEEEEE-TTSSHHHHHHHH----------HHHHH-TT-SEEEEESSSS
T ss_pred cEEEEEecCCChhHHHHHHHHHHHHHH-cCCceEEEECCCCcCHHHHHHHH----------HHHhCCCCCCEEEEcCCCC
Confidence 356667666666677778888888888 699999999965432 2222100 0011224569999999996
Q ss_pred CCccHHHHH
Q 028841 82 FGMMAAQFK 90 (203)
Q Consensus 82 ~~~~~~~~k 90 (203)
.+--...+.
T Consensus 99 ~~i~~~~i~ 107 (117)
T PF00763_consen 99 KHIDERKIL 107 (117)
T ss_dssp TTSHHHHHH
T ss_pred CCccHHHHH
Confidence 654444333
No 160
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=61.16 E-value=17 Score=29.74 Aligned_cols=37 Identities=14% Similarity=0.008 Sum_probs=30.3
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEE
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQ 39 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~ 39 (203)
|++|.|++-....+...+++.+.+.+.+ .|+++.+.+
T Consensus 4 ~~~v~iv~~~~k~~a~e~~~~i~~~L~~-~giev~v~~ 40 (295)
T PRK01231 4 FRNIGLIGRLGSSSVVETLRRLKDFLLD-RGLEVILDE 40 (295)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEec
Confidence 6689999888888888899999988887 688877654
No 161
>PF02410 Oligomerisation: Oligomerisation domain; InterPro: IPR004394 The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells. Maize has two RNA polymerases in plastids, but the plastid-encoded one, similar to bacterial RNA polymerases, is missing in iojap mutants. The role of iojap in chloroplast development, and the role of its bacterial orthologs modeled here, is unclear [, ]. This entry contains the bacterial protein YbeB (P0AAT6 from SWISSPROT), which has been shown to comigrate with the mature 50S ribosome subunit. Therefore it either represents a novel ribosome-associated protein or it is associated with a different oligomeric complex that comigrates with ribosomal particles [].; PDB: 2O5A_A 2ID1_B 3UPS_A.
Probab=60.90 E-value=19 Score=24.24 Aligned_cols=44 Identities=20% Similarity=0.142 Sum_probs=27.7
Q ss_pred HHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCCccHH
Q 028841 20 AEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAA 87 (203)
Q Consensus 20 a~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~~~~~ 87 (203)
++.+++.+.+..|.++.++|+++. -.-+|.+||+|..-.-.+-+
T Consensus 2 ~~~i~~~l~~~k~~dI~v~dv~~~------------------------~~~~dy~II~T~~S~rh~~a 45 (100)
T PF02410_consen 2 LEEIVEALEDKKAEDIVVLDVREK------------------------SSWADYFIIATGRSERHVRA 45 (100)
T ss_dssp HHHHHHHHHHTT-EEEEEEEGCTT------------------------BSS-SEEEEEEESSHHHHHH
T ss_pred HHHHHHHHHHcCCCCeEEEECCCC------------------------CcccCEEEEEEcCCHHHHHH
Confidence 455555555545679999999864 24579999998755433333
No 162
>COG3360 Uncharacterized conserved protein [Function unknown]
Probab=60.58 E-value=16 Score=22.77 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=23.4
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhccc
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASS 29 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~ 29 (203)
|||.++-.|+++.++.+.++|+++...
T Consensus 7 K~IelvGtSp~S~d~Ai~~Ai~RA~~t 33 (71)
T COG3360 7 KKIELVGTSPTSIDAAIANAIARAADT 33 (71)
T ss_pred EEEEEEecCCccHHHHHHHHHHHHHhh
Confidence 678888889999999999999887765
No 163
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=60.32 E-value=54 Score=24.42 Aligned_cols=61 Identities=13% Similarity=0.246 Sum_probs=37.5
Q ss_pred cchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEe-ccccCCccHHHHHH
Q 028841 13 YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFG-FPTRFGMMAAQFKA 91 (203)
Q Consensus 13 ~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiig-sP~y~~~~~~~~k~ 91 (203)
.++|..+.+.+.+ .|.+++++.+...... ..+.+.++|+||+. +|-.... ....+.
T Consensus 7 ~~~~~~l~~~l~~-----~~~~~~v~~~~~~~~~-----------------~~~~~~~~d~iii~Gg~~~~~d-~~~~~~ 63 (192)
T PF00117_consen 7 DSFTHSLVRALRE-----LGIDVEVVRVDSDFEE-----------------PLEDLDDYDGIIISGGPGSPYD-IEGLIE 63 (192)
T ss_dssp HTTHHHHHHHHHH-----TTEEEEEEETTGGHHH-----------------HHHHTTTSSEEEEECESSSTTS-HHHHHH
T ss_pred HHHHHHHHHHHHH-----CCCeEEEEECCCchhh-----------------hhhhhcCCCEEEECCcCCcccc-cccccc
Confidence 4567777776655 4678999987652100 01146788988664 6666555 455666
Q ss_pred HHHHh
Q 028841 92 FLDAT 96 (203)
Q Consensus 92 ~ld~~ 96 (203)
+++++
T Consensus 64 ~i~~~ 68 (192)
T PF00117_consen 64 LIREA 68 (192)
T ss_dssp HHHHH
T ss_pred ccccc
Confidence 66665
No 164
>PRK00074 guaA GMP synthase; Reviewed
Probab=59.50 E-value=42 Score=29.77 Aligned_cols=34 Identities=15% Similarity=0.217 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQV 40 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l 40 (203)
||.+|+||-+ ..++|..+++.+.+ .|+.++++..
T Consensus 2 ~~~~i~vlD~-Gsq~~~li~r~lre-----lg~~~~v~p~ 35 (511)
T PRK00074 2 HHDKILILDF-GSQYTQLIARRVRE-----LGVYSEIVPY 35 (511)
T ss_pred CCCEEEEEEC-CCCcHHHHHHHHHH-----CCCeEEEEEC
Confidence 3567888854 23457778888766 3667777764
No 165
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=59.07 E-value=17 Score=26.10 Aligned_cols=67 Identities=16% Similarity=0.160 Sum_probs=39.6
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCC-CceEEEEEcCCCCc-HHHhccCCCCCCCCCCCCChhhhhhcCeeEEe-cc
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVE-GVEAKLWQVPETLP-EEVLGKMSAPPKSDVPIITPNELAEADGFVFG-FP 79 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~-g~~v~~~~l~~~~~-~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiig-sP 79 (203)
+||+|+|..-+..-...+..+++.|++ . |++|. +|..+... . ..+.+.=....+.++|.||+. ||
T Consensus 1 ~kVfI~Ys~d~~~h~~~V~~la~~L~~-~~g~~V~-lD~~~~~~i~----------~~g~~~W~~~~~~~ad~Vliv~S~ 68 (150)
T PF08357_consen 1 RKVFISYSHDSEEHKEWVLALAEFLRQ-NCGIDVI-LDQWELNEIA----------RQGPPRWMERQIREADKVLIVCSP 68 (150)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHHHHh-ccCCcee-ecHHhhcccc----------cCCHHHHHHHHHhcCCEEEEEecc
Confidence 488998887554445677788888888 5 88775 45544310 0 000000013568899988554 65
Q ss_pred cc
Q 028841 80 TR 81 (203)
Q Consensus 80 ~y 81 (203)
.+
T Consensus 69 ~~ 70 (150)
T PF08357_consen 69 GY 70 (150)
T ss_pred ch
Confidence 54
No 166
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=58.73 E-value=5.3 Score=29.97 Aligned_cols=68 Identities=19% Similarity=0.182 Sum_probs=37.2
Q ss_pred eEEEEEcCC-cchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEec
Q 028841 4 KVYIVYYSM-YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGF 78 (203)
Q Consensus 4 kilii~~S~-~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigs 78 (203)
+-++++|++ +|.|. +|.++...+.. .|..+.+++..++- .. +.... .++-.......+..+|.+||==
T Consensus 48 ~~l~l~G~~G~GKTh-La~ai~~~~~~-~g~~v~f~~~~~L~-~~-l~~~~---~~~~~~~~~~~l~~~dlLilDD 116 (178)
T PF01695_consen 48 ENLILYGPPGTGKTH-LAVAIANEAIR-KGYSVLFITASDLL-DE-LKQSR---SDGSYEELLKRLKRVDLLILDD 116 (178)
T ss_dssp -EEEEEESTTSSHHH-HHHHHHHHHHH-TT--EEEEEHHHHH-HH-HHCCH---CCTTHCHHHHHHHTSSCEEEET
T ss_pred eEEEEEhhHhHHHHH-HHHHHHHHhcc-CCcceeEeecCcee-cc-ccccc---cccchhhhcCccccccEecccc
Confidence 347778875 79986 56666665555 68889888876531 11 11100 0000011246788899998753
No 167
>PRK08727 hypothetical protein; Validated
Probab=58.40 E-value=87 Score=24.42 Aligned_cols=57 Identities=11% Similarity=0.038 Sum_probs=35.8
Q ss_pred EEEEEcC-CcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEe
Q 028841 5 VYIVYYS-MYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFG 77 (203)
Q Consensus 5 ilii~~S-~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiig 77 (203)
.++++|. .+|.|. ++.++...+.+ .|..+.++.+.+.... ... ..+.+..+|.||+=
T Consensus 43 ~l~l~G~~G~GKTh-L~~a~~~~~~~-~~~~~~y~~~~~~~~~-~~~-------------~~~~l~~~dlLiID 100 (233)
T PRK08727 43 WLYLSGPAGTGKTH-LALALCAAAEQ-AGRSSAYLPLQAAAGR-LRD-------------ALEALEGRSLVALD 100 (233)
T ss_pred eEEEECCCCCCHHH-HHHHHHHHHHH-cCCcEEEEeHHHhhhh-HHH-------------HHHHHhcCCEEEEe
Confidence 4677875 478886 66777666666 5777888776553210 000 13466778888874
No 168
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=58.26 E-value=47 Score=23.12 Aligned_cols=37 Identities=11% Similarity=0.275 Sum_probs=24.1
Q ss_pred eEEEEEcCC--cchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 4 KVYIVYYSM--YGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilii~~S~--~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
|+++|+-.. .+..+ .+.+.+.+.. .+.+++++.....
T Consensus 1 k~~vi~Np~sG~~~~~--~~~v~~~l~~-~~~~~~~~~t~~~ 39 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAK--WKKVEPALRA-AGIDYEVIETESA 39 (130)
T ss_dssp SEEEEEETTSTTSHHH--HHHHHHHHHH-TTCEEEEEEESST
T ss_pred CEEEEECCCCCCCchh--HHHHHHHHHH-cCCceEEEEEecc
Confidence 566776554 34444 4777777777 6778888777653
No 169
>cd04436 DEP_fRgd2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGAP (GTPase-activator protein) Rgd2-like proteins. Rgd2-like proteins share a common domain architecture, containing, beside the RhoGAP domain, a DEP and a FCH (Fes/CIP4 homology) domain. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5.
Probab=58.11 E-value=47 Score=21.79 Aligned_cols=15 Identities=20% Similarity=0.284 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHH
Q 028841 180 LELEQAFHQGKHIAG 194 (203)
Q Consensus 180 ~~~~~~~~~g~~l~~ 194 (203)
.++..|+.||+.|++
T Consensus 46 ~s~~~aE~fGQdLv~ 60 (84)
T cd04436 46 KDLDAAEAFGQDLLN 60 (84)
T ss_pred CCHHHHHHHHHHHHh
Confidence 488899999999875
No 170
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=57.86 E-value=48 Score=23.94 Aligned_cols=81 Identities=17% Similarity=0.041 Sum_probs=40.1
Q ss_pred HHHHhcccCCCceEEEEEcC-CCCcHHHhccCCC-CCCCCCCCCChh--hhhhcCeeEEec-cccC-CccHHHHHHHHHH
Q 028841 22 EIKKGASSVEGVEAKLWQVP-ETLPEEVLGKMSA-PPKSDVPIITPN--ELAEADGFVFGF-PTRF-GMMAAQFKAFLDA 95 (203)
Q Consensus 22 ~i~~~~~~~~g~~v~~~~l~-~~~~~~~~~~~~~-~~~~d~~~~~~~--~l~~aD~iiigs-P~y~-~~~~~~~k~~ld~ 95 (203)
.+.+.++. .|++++++... .... ...... ....|.. .+ ...++|+|++.. |.+. ..-.+.+..||.+
T Consensus 17 ~~~~~l~~-a~~~v~~vs~~~~~~v---~~~~g~~~i~~d~~---~~~~~~~~~D~lvvpGG~~~~~~~~~~~~~~~l~~ 89 (165)
T cd03134 17 YPLYRLRE-AGAEVVVAGPEAGGEI---QGKHGYDTVTVDLT---IADVDADDYDALVIPGGTNPDKLRRDPDAVAFVRA 89 (165)
T ss_pred HHHHHHHH-CCCEEEEEccCCCccc---ccCcCceeecCCCC---hHHCCHHHCCEEEECCCCChhhhccCHHHHHHHHH
Confidence 34455555 58888888766 3221 111111 1111110 11 234789887664 3211 1223556677766
Q ss_pred hcccccccCCCCCceEEEEec
Q 028841 96 TGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 96 ~~~~~~~~~l~gK~~~~~~t~ 116 (203)
.. -++|+++.++++
T Consensus 90 ~~-------~~~~~i~~ic~G 103 (165)
T cd03134 90 FA-------EAGKPVAAICHG 103 (165)
T ss_pred HH-------HcCCeEEEEchH
Confidence 53 367877777664
No 171
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=57.70 E-value=70 Score=23.11 Aligned_cols=46 Identities=4% Similarity=-0.059 Sum_probs=30.1
Q ss_pred hhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 66 NELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..+..+|++|+..-.....--..++.|+..+... ..+.|+.++++-
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-----~~~~piiiv~nK 113 (166)
T cd00877 68 GYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRV-----CGNIPIVLCGNK 113 (166)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-----CCCCcEEEEEEc
Confidence 3567899999987766544334566777776532 236887777763
No 172
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=57.30 E-value=1.1e+02 Score=25.23 Aligned_cols=109 Identities=17% Similarity=0.215 Sum_probs=59.9
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHH-Hhc---cC-CCC---------C-CCCCCC----CC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEE-VLG---KM-SAP---------P-KSDVPI----IT 64 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~-~~~---~~-~~~---------~-~~d~~~----~~ 64 (203)
+..+|......-+..-++...+.+++ .|++++.+.+.+.-.++ +.+ .. ..+ | ..++.+ ..
T Consensus 35 ~LaiI~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~ 113 (301)
T PRK14194 35 ALAVILVGNDPASQVYVRNKILRAEE-AGIRSLEHRLPADTSQARLLALIAELNADPSVNGILLQLPLPAHIDEARVLQA 113 (301)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHH-cCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhc
Confidence 45666666565667778888888888 79999999997643221 211 10 000 1 000000 00
Q ss_pred hhhhhhcCee--------EEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCC
Q 028841 65 PNELAEADGF--------VFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGS 118 (203)
Q Consensus 65 ~~~l~~aD~i--------iigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~ 118 (203)
....++.|++ ..+-+.+.-.-|..+-.+|++.. -.+.||.+++++.++-
T Consensus 114 I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~aii~lL~~~~-----i~l~Gk~V~vIG~s~i 170 (301)
T PRK14194 114 INPLKDVDGFHSENVGGLSQGRDVLTPCTPSGCLRLLEDTC-----GDLTGKHAVVIGRSNI 170 (301)
T ss_pred cCchhccCccChhhhhHHhcCCCCCCCCcHHHHHHHHHHhC-----CCCCCCEEEEECCCCc
Confidence 1223344444 23334344444555666666653 2589999999988644
No 173
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=57.18 E-value=49 Score=26.64 Aligned_cols=41 Identities=15% Similarity=0.056 Sum_probs=27.8
Q ss_pred CceEEEEEcCC--cchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 2 ATKVYIVYYSM--YGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 2 m~kilii~~S~--~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
|+|+++|+-.. .+...+..+.+.+.+.+ .|.+++++.....
T Consensus 1 ~~~~~ii~Np~sg~~~~~~~~~~i~~~l~~-~~~~~~~~~t~~~ 43 (293)
T TIGR00147 1 MAEAPAILNPTAGKSNDNKPLREVIMLLRE-EGMEIHVRVTWEK 43 (293)
T ss_pred CceEEEEECCCccchhhHHHHHHHHHHHHH-CCCEEEEEEecCc
Confidence 46888877553 44556777778888877 6888777665443
No 174
>COG4551 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=56.37 E-value=10 Score=25.37 Aligned_cols=40 Identities=15% Similarity=-0.051 Sum_probs=23.3
Q ss_pred hhhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 65 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
.+.+.+||.|++---++--. +..+.. ..++||.+.+.---
T Consensus 45 ~e~leWAdiIfVMEr~Hrqk-------L~krf~-----~~lk~kRviCLDIP 84 (109)
T COG4551 45 REQLEWADIIFVMERVHRQK-------LQKRFK-----ASLKGKRVICLDIP 84 (109)
T ss_pred HHHhhhhhhhhhHHHHHHHH-------HHHHhh-----HHhcCCeEEEEeCC
Confidence 68899999987643332221 112221 13789988776543
No 175
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=56.33 E-value=27 Score=27.69 Aligned_cols=48 Identities=17% Similarity=0.335 Sum_probs=27.0
Q ss_pred hhhhcC-eeEEeccccC--CccHHHHHHHHHHhcccccccCCCCCceEEEEecCC
Q 028841 67 ELAEAD-GFVFGFPTRF--GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGS 118 (203)
Q Consensus 67 ~l~~aD-~iiigsP~y~--~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~ 118 (203)
++..+| +||+|+..|. +.+++.++.=++.-..++ -.||.-.++.|+|.
T Consensus 41 ~~p~~d~ivVLGa~~~~~~g~ps~~l~~Rl~~A~~LY----k~gk~~~ilvSGg~ 91 (239)
T PRK10834 41 DLPYRQVGVVLGTAKYYRTGVINQYYRYRIQGAINAY----NSGKVNYLLLSGDN 91 (239)
T ss_pred hCCCCCEEEEcCCcccCCCCCcCHHHHHHHHHHHHHH----HhCCCCEEEEeCCC
Confidence 343344 5588988774 556666665555543332 24555556666654
No 176
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=56.10 E-value=21 Score=25.78 Aligned_cols=53 Identities=19% Similarity=0.167 Sum_probs=31.5
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecccc
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR 81 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y 81 (203)
+++|+.-| ..+.+-++..+.+ .|..++..+-...+ ..+.+++||.||-+++.-
T Consensus 30 ~v~VvGrs-----~~vG~pla~lL~~-~gatV~~~~~~t~~-------------------l~~~v~~ADIVvsAtg~~ 82 (140)
T cd05212 30 KVLVVGRS-----GIVGAPLQCLLQR-DGATVYSCDWKTIQ-------------------LQSKVHDADVVVVGSPKP 82 (140)
T ss_pred EEEEECCC-----chHHHHHHHHHHH-CCCEEEEeCCCCcC-------------------HHHHHhhCCEEEEecCCC
Confidence 45554434 3334444444444 47777777643321 145789999999998876
No 177
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=56.04 E-value=24 Score=28.26 Aligned_cols=39 Identities=21% Similarity=0.452 Sum_probs=30.3
Q ss_pred eEEEEEcC-------CcchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 4 KVYIVYYS-------MYGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilii~~S-------~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
||++|..+ ..|-.++.+..+.+.+.+ .|++|.++.....
T Consensus 2 kI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~-~g~~V~v~~~~~~ 47 (335)
T cd03802 2 RIALVAPPREPVPPPAYGGTERVVAALTEGLVA-RGHEVTLFASGDS 47 (335)
T ss_pred eEEEEcCCcccCCCcccCcHHHHHHHHHHHHHh-cCceEEEEecCCC
Confidence 89998654 356677788888888887 7999999876554
No 178
>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein. This family of proteins has been observed universally in archaeal genomes and contains a match to the TIGR00322 model for the diphthamide biosynthesis protein 2-related domain.
Probab=56.04 E-value=40 Score=27.79 Aligned_cols=43 Identities=33% Similarity=0.311 Sum_probs=35.5
Q ss_pred ceEEEEEcCCcc-hHHHHHHHHHHhcccCCCceEEEEEcCCCCcH
Q 028841 3 TKVYIVYYSMYG-HVEKLAEEIKKGASSVEGVEAKLWQVPETLPE 46 (203)
Q Consensus 3 ~kilii~~S~~g-~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~ 46 (203)
+++.||.+|..| ++..+++.+.+.+++ .|.++.++-+.+.++.
T Consensus 213 ~~vGIlvgTl~~q~~~~~~~~l~~ll~~-~gkk~y~i~~~~in~~ 256 (308)
T TIGR03682 213 KKFGILVSTKKGQRRPELAEELKKLLEE-LGKEALLILLDNISPD 256 (308)
T ss_pred CeEEEEEEccCcCCCHHHHHHHHHHHHH-cCCeEEEEEeCCCCHH
Confidence 468889998755 577899999999998 7999999999887654
No 179
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=55.81 E-value=1.1e+02 Score=24.88 Aligned_cols=62 Identities=19% Similarity=0.287 Sum_probs=37.8
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFG 83 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~ 83 (203)
||.|| |+ | .+...++..+.. .|.+|.+++-.... + ..+.+.++|.||+..|.
T Consensus 6 ~I~ii-G~--G---~~G~~lA~~l~~-~G~~V~~~~r~~~~--------------~----~~~~~~~advvi~~vp~--- 57 (308)
T PRK14619 6 TIAIL-GA--G---AWGSTLAGLASA-NGHRVRVWSRRSGL--------------S----LAAVLADADVIVSAVSM--- 57 (308)
T ss_pred EEEEE-Cc--c---HHHHHHHHHHHH-CCCEEEEEeCCCCC--------------C----HHHHHhcCCEEEEECCh---
Confidence 66665 43 2 244455555555 58889888764321 0 13456799999999994
Q ss_pred ccHHHHHHHHHHh
Q 028841 84 MMAAQFKAFLDAT 96 (203)
Q Consensus 84 ~~~~~~k~~ld~~ 96 (203)
..++.+++.+
T Consensus 58 ---~~~~~v~~~l 67 (308)
T PRK14619 58 ---KGVRPVAEQV 67 (308)
T ss_pred ---HHHHHHHHHH
Confidence 2455555555
No 180
>COG5426 Uncharacterized membrane protein [Function unknown]
Probab=55.76 E-value=13 Score=28.53 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=27.5
Q ss_pred HHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEe
Q 028841 19 LAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFG 77 (203)
Q Consensus 19 la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiig 77 (203)
=|+.+.+.++. .+++++.....+... .+|. ..+.+..||+||+.
T Consensus 33 GAd~Ll~~Lr~-g~~dv~yMpAH~~q~-------------~FPq-tme~L~~YDaivlS 76 (254)
T COG5426 33 GADPLLKALRG-GEYDVTYMPAHDAQE-------------KFPQ-TMEGLDAYDAIVLS 76 (254)
T ss_pred CchHHHHHHhC-CCcceEEechHHHHH-------------hcch-hhhhhcccceEEEe
Confidence 46677777776 666777665544321 1222 25678999999875
No 181
>PRK06545 prephenate dehydrogenase; Validated
Probab=55.74 E-value=63 Score=27.08 Aligned_cols=70 Identities=13% Similarity=0.134 Sum_probs=36.9
Q ss_pred HHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCCccHHHHHHHHHHh
Q 028841 19 LAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDAT 96 (203)
Q Consensus 19 la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~ 96 (203)
|...++..+.+ .|.++.+++..... ............++......+.+.++|.||++.|.. .+..++..+
T Consensus 11 iG~siA~~L~~-~G~~v~i~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~------~~~~vl~~l 80 (359)
T PRK06545 11 IGGSLALAIKA-AGPDVFIIGYDPSA-AQLARALGFGVIDELAADLQRAAAEADLIVLAVPVD------ATAALLAEL 80 (359)
T ss_pred HHHHHHHHHHh-cCCCeEEEEeCCCH-HHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHH------HHHHHHHHH
Confidence 55555666665 57788888765432 111111111111111011123468899999999985 345555555
No 182
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=55.58 E-value=1.1e+02 Score=24.90 Aligned_cols=39 Identities=15% Similarity=0.236 Sum_probs=29.0
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
+..+|......-+..-++...+.+++ .|++++++++.+.
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~ 72 (284)
T PRK14190 34 GLAVILVGDDPASHSYVRGKKKAAEK-VGIYSELYEFPAD 72 (284)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 45566655555566777887888888 7999999999765
No 183
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=55.34 E-value=15 Score=26.75 Aligned_cols=40 Identities=20% Similarity=0.376 Sum_probs=27.0
Q ss_pred HHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEe
Q 028841 21 EEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFG 77 (203)
Q Consensus 21 ~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiig 77 (203)
+.+.+.+++ .|++++.+++.+.+..+. .+.+.+||+|+|+
T Consensus 3 ~~~~~~f~~-~g~~v~~l~~~~~~~~~~----------------~~~i~~ad~I~~~ 42 (154)
T PF03575_consen 3 EKFRKAFRK-LGFEVDQLDLSDRNDADI----------------LEAIREADAIFLG 42 (154)
T ss_dssp HHHHHHHHH-CT-EEEECCCTSCGHHHH----------------HHHHHHSSEEEE-
T ss_pred HHHHHHHHH-CCCEEEEEeccCCChHHH----------------HHHHHhCCEEEEC
Confidence 455667777 688888888877533221 4688999999986
No 184
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.24 E-value=56 Score=24.10 Aligned_cols=107 Identities=13% Similarity=0.075 Sum_probs=63.8
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccC----CCceEEEEEcCCCC--cHH-HhccCCCCCCCCCCCCChhhhhhcCee
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSV----EGVEAKLWQVPETL--PEE-VLGKMSAPPKSDVPIITPNELAEADGF 74 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~----~g~~v~~~~l~~~~--~~~-~~~~~~~~~~~d~~~~~~~~l~~aD~i 74 (203)
|-|++|+--|..|.|.-+-+..-+.+..+ -|++..+-.+.... +.- +.+ ...+.-+..++....+.++++
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwD---TagqEryrtiTTayyRgamgf 97 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWD---TAGQERYRTITTAYYRGAMGF 97 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEe---cccchhhhHHHHHHhhccceE
Confidence 45899988888899988887776655431 24333322222110 000 000 000011223345678999999
Q ss_pred EEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEe
Q 028841 75 VFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYS 115 (203)
Q Consensus 75 iigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t 115 (203)
|+..-+-+..--..+..|+-.+... .+.+-++.++++
T Consensus 98 iLmyDitNeeSf~svqdw~tqIkty----sw~naqvilvgn 134 (193)
T KOG0093|consen 98 ILMYDITNEESFNSVQDWITQIKTY----SWDNAQVILVGN 134 (193)
T ss_pred EEEEecCCHHHHHHHHHHHHHheee----eccCceEEEEec
Confidence 9999888877777788888777533 466777777765
No 185
>COG3828 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.22 E-value=8.5 Score=29.48 Aligned_cols=39 Identities=31% Similarity=0.296 Sum_probs=27.4
Q ss_pred CCceEEEEEcCCcch-HHHHHHHHHHhcccCCCceEEEEEc
Q 028841 1 MATKVYIVYYSMYGH-VEKLAEEIKKGASSVEGVEAKLWQV 40 (203)
Q Consensus 1 Mm~kilii~~S~~g~-T~~la~~i~~~~~~~~g~~v~~~~l 40 (203)
||+|++|+++--.|+ -+..+..+..-+.+ .|+.+++-.-
T Consensus 2 m~~kalIvwgGW~gHeP~~~ahi~~~~l~e-e~f~vev~~~ 41 (239)
T COG3828 2 MEKKALIVWGGWRGHEPETRAHIIKGPLEE-EGFLVEVGGT 41 (239)
T ss_pred CCcceEEEEccccCCCchhcchhccCcChh-hceEEEecCc
Confidence 679999999987765 34556666666666 6777765443
No 186
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=55.00 E-value=26 Score=29.02 Aligned_cols=40 Identities=25% Similarity=0.278 Sum_probs=32.3
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
++|-++|.|.--|+..+++++.+.+++ .|.++...-+.+.
T Consensus 160 k~Igv~Y~p~E~ns~~l~eelk~~A~~-~Gl~vve~~v~~~ 199 (322)
T COG2984 160 KSIGVLYNPGEANSVSLVEELKKEARK-AGLEVVEAAVTSV 199 (322)
T ss_pred eeEEEEeCCCCcccHHHHHHHHHHHHH-CCCEEEEEecCcc
Confidence 466677777777999999999999999 7988877776554
No 187
>PRK13566 anthranilate synthase; Provisional
Probab=54.47 E-value=93 Score=29.00 Aligned_cols=33 Identities=21% Similarity=0.205 Sum_probs=23.0
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
+|+||-+- .+++..+++.+.+ .|++++++....
T Consensus 528 ~IlvID~~-dsf~~~l~~~Lr~-----~G~~v~vv~~~~ 560 (720)
T PRK13566 528 RVLLVDHE-DSFVHTLANYFRQ-----TGAEVTTVRYGF 560 (720)
T ss_pred EEEEEECC-CchHHHHHHHHHH-----CCCEEEEEECCC
Confidence 78888665 4667777777754 467888887654
No 188
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=54.40 E-value=1.5e+02 Score=25.91 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
|++||||+..+ .++..+.+.+++ .|.++..++...
T Consensus 1 ~~~kvLi~~~g------eia~~ii~a~~~-~Gi~~v~v~~~~ 35 (472)
T PRK07178 1 MIKKILIANRG------EIAVRIVRACAE-MGIRSVAIYSEA 35 (472)
T ss_pred CCcEEEEECCc------HHHHHHHHHHHH-cCCeEEEEeCCC
Confidence 77899998544 345566666666 688888776543
No 189
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=54.27 E-value=22 Score=32.44 Aligned_cols=91 Identities=19% Similarity=0.124 Sum_probs=53.0
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhh-hhcCeeEEecccc
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNEL-AEADGFVFGFPTR 81 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l-~~aD~iiigsP~y 81 (203)
.|+.|+|+|.+|..+..|..+.+.+ .. .+...+...+... -.+ ..-+.+++..-+|
T Consensus 47 ~~~~v~~~s~tgtae~~a~~l~~~~-~~--~~~~~~~~~d~~~--------------------~~l~~~~~l~~~~~at~ 103 (645)
T KOG1158|consen 47 VKATVLYGSQTGTAEDFAKRLSEIF-AR--FELKVLKVADYDL--------------------YALEDHEKLLVVVLATY 103 (645)
T ss_pred eeEEEEeccCCCCHHHHHHHHHHHh-hh--ccccceeecchhh--------------------cccccccceeeeeeehh
Confidence 3678899999999999999988888 41 2333333332210 012 3336677777777
Q ss_pred C-CccHHHHHHHHHHhcccccccCCCCCceEEEEecC
Q 028841 82 F-GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTG 117 (203)
Q Consensus 82 ~-~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g 117 (203)
+ |.+|..--.|.+++... .......+.+++|+-+.
T Consensus 104 g~gd~~dn~~~f~~~l~~~-~~~~~~~~~~~vFglg~ 139 (645)
T KOG1158|consen 104 GEGDPPDNAEAFYQSLTEL-KVLPSSLLRYAVFGLGN 139 (645)
T ss_pred cCCCCCccHHHHHHHHhhc-cCchhhhhhHHHhhccc
Confidence 5 77776666666665421 01122335556665543
No 190
>PRK10474 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=54.20 E-value=32 Score=22.59 Aligned_cols=46 Identities=24% Similarity=0.234 Sum_probs=26.6
Q ss_pred HHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 20 AEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 20 a~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
++.+.+..++ .|+++.+.--...-+.. ....+++..+|.||+..-+
T Consensus 3 AeaL~~aA~~-~G~~i~VEtqg~~g~~~--------------~lt~~~i~~Ad~VIia~d~ 48 (88)
T PRK10474 3 AEALESAAKA-KGWEVKVETQGSIGLEN--------------ELTAEDVASADMVILTKDI 48 (88)
T ss_pred HHHHHHHHHH-CCCeEEEEecCCcCcCC--------------CCCHHHHHhCCEEEEEecC
Confidence 4556666666 68777654322211110 1125789999999998543
No 191
>PRK05788 cobalamin biosynthesis protein CbiG; Validated
Probab=54.02 E-value=31 Score=28.57 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=19.8
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhccc
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASS 29 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~ 29 (203)
++.|+..|..| ..+++.+++.+..
T Consensus 5 ~iaii~~t~~G--~~la~~l~~~l~~ 28 (315)
T PRK05788 5 KIAIICATERG--RDLAERLKAKLKA 28 (315)
T ss_pred eEEEEEECccH--HHHHHHHHHhccc
Confidence 89999998887 5788999888854
No 192
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=53.83 E-value=22 Score=25.61 Aligned_cols=28 Identities=21% Similarity=0.207 Sum_probs=20.0
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhccc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASS 29 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~ 29 (203)
||+|||+|...+..-+ .||+.+.+.+..
T Consensus 1 ~~~kVLFVC~gN~cRS-pmAE~l~~~~~~ 28 (139)
T COG0394 1 MMMKVLFVCTGNICRS-PMAEALLRHLAP 28 (139)
T ss_pred CCceEEEEcCCCcccC-HHHHHHHHHhcc
Confidence 6779999886654443 588888877754
No 193
>PRK08655 prephenate dehydrogenase; Provisional
Probab=52.96 E-value=57 Score=28.28 Aligned_cols=78 Identities=15% Similarity=0.164 Sum_probs=40.1
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFG 83 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~ 83 (203)
||+||-++ | .|...++..+.+ .|.++.+++...................+ ..+.+.++|.||++.|+.
T Consensus 2 kI~IIGG~--G---~mG~slA~~L~~-~G~~V~v~~r~~~~~~~~a~~~gv~~~~~----~~e~~~~aDvVIlavp~~-- 69 (437)
T PRK08655 2 KISIIGGT--G---GLGKWFARFLKE-KGFEVIVTGRDPKKGKEVAKELGVEYAND----NIDAAKDADIVIISVPIN-- 69 (437)
T ss_pred EEEEEecC--C---HHHHHHHHHHHH-CCCEEEEEECChHHHHHHHHHcCCeeccC----HHHHhccCCEEEEecCHH--
Confidence 77776433 2 244445555555 57788888754322111111111100111 134578899999999974
Q ss_pred ccHHHHHHHHHHhc
Q 028841 84 MMAAQFKAFLDATG 97 (203)
Q Consensus 84 ~~~~~~k~~ld~~~ 97 (203)
.+..+++.+.
T Consensus 70 ----~~~~vl~~l~ 79 (437)
T PRK08655 70 ----VTEDVIKEVA 79 (437)
T ss_pred ----HHHHHHHHHH
Confidence 3445555553
No 194
>PRK06217 hypothetical protein; Validated
Probab=52.90 E-value=21 Score=26.59 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=19.4
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGAS 28 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~ 28 (203)
|| +|+|+=.|..|.| .+++.+++.+.
T Consensus 1 ~~-~I~i~G~~GsGKS-Tla~~L~~~l~ 26 (183)
T PRK06217 1 MM-RIHITGASGSGTT-TLGAALAERLD 26 (183)
T ss_pred Ce-EEEEECCCCCCHH-HHHHHHHHHcC
Confidence 54 7777666778887 48888888774
No 195
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=52.90 E-value=88 Score=23.35 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=16.4
Q ss_pred cchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 13 YGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 13 ~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
.+|+..+++.+.+ .|++++++...
T Consensus 8 ~~~~~~l~~~l~~-----~g~~~~~~~~~ 31 (188)
T TIGR00888 8 SQYTQLIARRLRE-----LGVYSELVPNT 31 (188)
T ss_pred chHHHHHHHHHHH-----cCCEEEEEeCC
Confidence 4678878777744 46678777654
No 196
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=52.88 E-value=36 Score=28.13 Aligned_cols=41 Identities=15% Similarity=0.080 Sum_probs=31.1
Q ss_pred CC-ceEEEEEcCCc---chHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 1 MA-TKVYIVYYSMY---GHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 1 Mm-~kilii~~S~~---g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
|| +||+|++|... --+-+=++.+.+.+.+ .|+++..+++..
T Consensus 1 m~~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~-~~~~~~~~~~~~ 45 (333)
T PRK01966 1 MMKMRVALLFGGRSAEHEVSLVSAKSVLKALDK-EKYEVVPIGITK 45 (333)
T ss_pred CCCcEEEEEeCCCCCcchhhHHHHHHHHHHhcc-cCCEEEEEEECC
Confidence 54 68999998653 3355667788888887 799999999865
No 197
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=52.72 E-value=1.2e+02 Score=24.24 Aligned_cols=76 Identities=12% Similarity=0.090 Sum_probs=46.4
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhh--hhhcCeeEEec
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNE--LAEADGFVFGF 78 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~--l~~aD~iiigs 78 (203)
||.||-|+-..+-| |..+++.+.+....+.++++.++.-....-++..+ +..... -.+-|.+|+.|
T Consensus 1 mvvKiGiiKlGNig-~s~~idl~lDErAdRedI~vrv~gsGaKm~pe~~~-----------~~~~~~~~~~~pDf~i~is 68 (277)
T PRK00994 1 MVVKIGIIKLGNIG-MSPVIDLLLDERADREDIDVRVVGSGAKMGPEEVE-----------EVVKKMLEEWKPDFVIVIS 68 (277)
T ss_pred CeEEEEEEEecccc-hHHHHHHHHHhhhcccCceEEEeccCCCCCHHHHH-----------HHHHHHHHhhCCCEEEEEC
Confidence 67788888666555 45688888877766567777777655443221111 000112 23789999999
Q ss_pred cccCCccHHHHH
Q 028841 79 PTRFGMMAAQFK 90 (203)
Q Consensus 79 P~y~~~~~~~~k 90 (203)
| |...|++-+
T Consensus 69 P--N~a~PGP~~ 78 (277)
T PRK00994 69 P--NPAAPGPKK 78 (277)
T ss_pred C--CCCCCCchH
Confidence 9 455666544
No 198
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=52.42 E-value=84 Score=22.45 Aligned_cols=75 Identities=12% Similarity=0.200 Sum_probs=40.7
Q ss_pred CceEEEEEcCCcchHHHHHHH-HHHhcccCCCceEEEEEcCCCCc-HHHhccCCCCCCCCCCCCChhhhh--hcCeeEEe
Q 028841 2 ATKVYIVYYSMYGHVEKLAEE-IKKGASSVEGVEAKLWQVPETLP-EEVLGKMSAPPKSDVPIITPNELA--EADGFVFG 77 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~-i~~~~~~~~g~~v~~~~l~~~~~-~~~~~~~~~~~~~d~~~~~~~~l~--~aD~iiig 77 (203)
|++..|+.++..|....+... ++..++. .|++ ++++....| +++. +... ++|.|.+.
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~-~G~e--Vi~LG~~vp~e~i~----------------~~a~~~~~d~V~lS 61 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTE-AGFE--VINLGVMTSQEEFI----------------DAAIETDADAILVS 61 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHH-CCCE--EEECCCCCCHHHHH----------------HHHHHcCCCEEEEc
Confidence 455556667665544444443 3444444 6754 567765443 3222 2333 45555554
Q ss_pred ccccCCccHHHHHHHHHHhc
Q 028841 78 FPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 78 sP~y~~~~~~~~k~~ld~~~ 97 (203)
+ ..+..-..++.+++.+.
T Consensus 62 ~--~~~~~~~~~~~~~~~L~ 79 (137)
T PRK02261 62 S--LYGHGEIDCRGLREKCI 79 (137)
T ss_pred C--ccccCHHHHHHHHHHHH
Confidence 4 33455567888888885
No 199
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=52.30 E-value=85 Score=24.63 Aligned_cols=42 Identities=21% Similarity=0.181 Sum_probs=25.0
Q ss_pred HHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEe-cccc
Q 028841 17 EKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFG-FPTR 81 (203)
Q Consensus 17 ~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiig-sP~y 81 (203)
..+++.+.+ .|++++++...+... ....+.++|+|||. .+.|
T Consensus 13 ~~~~~al~~-----aG~~v~~v~~~~~~~------------------~~~~l~~~d~liipGG~~~ 55 (238)
T cd01740 13 RDMAYAFEL-----AGFEAEDVWHNDLLA------------------GRKDLDDYDGVVLPGGFSY 55 (238)
T ss_pred HHHHHHHHH-----cCCCEEEEeccCCcc------------------ccCCHhhCCEEEECCCCCc
Confidence 345555543 477888887755310 01257889999775 4444
No 200
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=50.98 E-value=1.2e+02 Score=24.38 Aligned_cols=108 Identities=11% Similarity=0.160 Sum_probs=55.0
Q ss_pred HHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCCccHHHHHHHH---HH
Q 028841 19 LAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFL---DA 95 (203)
Q Consensus 19 la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~~~~~~~k~~l---d~ 95 (203)
|...++..+.+ .|.++.++|......+...+ ......++ ..+.+.++|.||+..|.. ..++..+ +.
T Consensus 7 mG~~mA~~L~~-~G~~V~v~dr~~~~~~~l~~-~g~~~~~s----~~~~~~~advVil~vp~~-----~~~~~v~~g~~~ 75 (288)
T TIGR01692 7 MGGPMAANLLK-AGHPVRVFDLFPDAVEEAVA-AGAQAAAS----PAEAAEGADRVITMLPAG-----QHVISVYSGDEG 75 (288)
T ss_pred hHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHH-cCCeecCC----HHHHHhcCCEEEEeCCCh-----HHHHHHHcCcch
Confidence 44455555555 67888888765432222211 11111111 134678999999999873 2345554 33
Q ss_pred hcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCc
Q 028841 96 TGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYT 147 (203)
Q Consensus 96 ~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~ 147 (203)
+.. ...+|+.+ +.++ +. ... +...+.+.+...|..++..++.
T Consensus 76 l~~----~~~~g~~v--id~s-t~--~p~-~~~~~~~~~~~~g~~~vdaPv~ 117 (288)
T TIGR01692 76 ILP----KVAKGSLL--IDCS-TI--DPD-SARKLAELAAAHGAVFMDAPVS 117 (288)
T ss_pred Hhh----cCCCCCEE--EECC-CC--CHH-HHHHHHHHHHHcCCcEEECCCC
Confidence 321 01233332 2222 21 111 2345667777788888876544
No 201
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=50.75 E-value=83 Score=24.49 Aligned_cols=38 Identities=13% Similarity=0.052 Sum_probs=28.7
Q ss_pred eEEEEEcCC--cchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 4 KVYIVYYSM--YGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilii~~S~--~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
||.+|+.+. +.....+.+.+.+.+.+ .|.++.++....
T Consensus 1 ~i~~i~~~~~~~~~~~~~~~g~~~~~~~-~g~~v~~~~~~~ 40 (271)
T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAKD-LGVDVEYRGPET 40 (271)
T ss_pred CEEEecCCCCCCcHHHHHHHHHHHHHHH-hCCEEEEECCCC
Confidence 566666543 56788899999999988 788888876654
No 202
>TIGR00272 DPH2 diphthamide biosynthesis protein 2. This protein has been shown in Saccharomyces cerevisiae to be one of several required for the modification of a particular histidine residue of translation elongation factor 2 to diphthamide. This modified site can then become the target for ADP-ribosylation by diphtheria toxin.
Probab=50.68 E-value=44 Score=29.59 Aligned_cols=44 Identities=18% Similarity=0.183 Sum_probs=36.6
Q ss_pred ceEEEEEcCCcc-hHHHHHHHHHHhcccCCCceEEEEEcCCCCcHH
Q 028841 3 TKVYIVYYSMYG-HVEKLAEEIKKGASSVEGVEAKLWQVPETLPEE 47 (203)
Q Consensus 3 ~kilii~~S~~g-~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~ 47 (203)
+++-||.++..+ ++..+++.+.+.+++ .|-+..++-+.+.++..
T Consensus 282 ~~~GIlVgTL~~q~~~~ii~~l~~li~~-~GkK~yl~~vgkinpaK 326 (496)
T TIGR00272 282 GCIGIVVGTLGVRNTRETINELRKMIKT-AGKKHYLFVVGKPNPAK 326 (496)
T ss_pred CEEEEEEecCccCCCHHHHHHHHHHHHH-cCCcEEEEEeCCCCHHH
Confidence 357888888754 688899999999999 79999999998887644
No 203
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=50.42 E-value=48 Score=24.66 Aligned_cols=18 Identities=11% Similarity=-0.005 Sum_probs=14.8
Q ss_pred hhhhhhcCeeEEeccccC
Q 028841 65 PNELAEADGFVFGFPTRF 82 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~ 82 (203)
.+.+.+||.||.+++.=.
T Consensus 82 ~~~l~~aDiVIsat~~~~ 99 (168)
T cd01080 82 KEHTKQADIVIVAVGKPG 99 (168)
T ss_pred HHHHhhCCEEEEcCCCCc
Confidence 457899999999988743
No 204
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=50.21 E-value=5.5 Score=30.22 Aligned_cols=83 Identities=16% Similarity=0.115 Sum_probs=42.0
Q ss_pred ceEEEEEcCC-----------cchHHHHHHHHHHhcccCCCceEEEEEcCCC-CcHHHhccCCCCCCCCCCCCChhhhhh
Q 028841 3 TKVYIVYYSM-----------YGHVEKLAEEIKKGASSVEGVEAKLWQVPET-LPEEVLGKMSAPPKSDVPIITPNELAE 70 (203)
Q Consensus 3 ~kilii~~S~-----------~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~-~~~~~~~~~~~~~~~d~~~~~~~~l~~ 70 (203)
+||||-.|.. +..|-++..+|++.+.. .|++|.++.-... .++..+.........++.+...+.+.+
T Consensus 4 k~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~-~Ga~V~li~g~~~~~~p~~~~~i~v~sa~em~~~~~~~~~~ 82 (185)
T PF04127_consen 4 KKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAAR-RGAEVTLIHGPSSLPPPPGVKVIRVESAEEMLEAVKELLPS 82 (185)
T ss_dssp -EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHH-TT-EEEEEE-TTS----TTEEEEE-SSHHHHHHHHHHHGGG
T ss_pred CEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHH-CCCEEEEEecCccccccccceEEEecchhhhhhhhccccCc
Confidence 4677776652 34577889999998888 7999999886632 111111100000001111112345678
Q ss_pred cCeeEEeccccCCccH
Q 028841 71 ADGFVFGFPTRFGMMA 86 (203)
Q Consensus 71 aD~iiigsP~y~~~~~ 86 (203)
+|.+|...-+=.+.+.
T Consensus 83 ~Di~I~aAAVsDf~p~ 98 (185)
T PF04127_consen 83 ADIIIMAAAVSDFRPE 98 (185)
T ss_dssp GSEEEE-SB--SEEES
T ss_pred ceeEEEecchhheeeh
Confidence 8999999877666654
No 205
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=50.18 E-value=1.2e+02 Score=24.37 Aligned_cols=110 Identities=12% Similarity=0.147 Sum_probs=51.4
Q ss_pred HHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCCccHHHHHHHHHHhcc
Q 028841 19 LAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGG 98 (203)
Q Consensus 19 la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~ 98 (203)
|...++..+.+ .|.+|.++|........... .......+ ..+.+.++|.||+..|. +..++..+.....
T Consensus 10 mG~~iA~~l~~-~G~~V~~~dr~~~~~~~~~~-~g~~~~~~----~~~~~~~aDivi~~vp~-----~~~~~~v~~~~~~ 78 (291)
T TIGR01505 10 MGSPMSINLAK-AGYQLHVTTIGPEVADELLA-AGAVTAET----ARQVTEQADVIFTMVPD-----SPQVEEVAFGENG 78 (291)
T ss_pred HHHHHHHHHHH-CCCeEEEEcCCHHHHHHHHH-CCCcccCC----HHHHHhcCCEEEEecCC-----HHHHHHHHcCcch
Confidence 44444444444 57788887765322111111 11111111 13567899999999996 3455555411000
Q ss_pred cccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCC
Q 028841 99 LWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGY 146 (203)
Q Consensus 99 ~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~ 146 (203)
. .....+++ ++...+... .. +...+.+.+...|+.++..++
T Consensus 79 ~-~~~~~~g~---iivd~st~~--~~-~~~~l~~~l~~~g~~~~~~pv 119 (291)
T TIGR01505 79 I-IEGAKPGK---TLVDMSSIS--PI-ESKRFAKAVKEKGIDYLDAPV 119 (291)
T ss_pred H-hhcCCCCC---EEEECCCCC--HH-HHHHHHHHHHHcCCCEEecCC
Confidence 0 00011233 222222211 11 123466777777888877543
No 206
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=50.03 E-value=19 Score=26.27 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=19.1
Q ss_pred hhhhhhcCeeEEeccccCCccHHHHHHHHHHhcc
Q 028841 65 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGG 98 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~ 98 (203)
.+.++++|.||++.|.+. ++.+++++..
T Consensus 64 ~~a~~~ad~IiiavPs~~------~~~~~~~l~~ 91 (157)
T PF01210_consen 64 EEALEDADIIIIAVPSQA------HREVLEQLAP 91 (157)
T ss_dssp HHHHTT-SEEEE-S-GGG------HHHHHHHHTT
T ss_pred HHHhCcccEEEecccHHH------HHHHHHHHhh
Confidence 456889999999999875 4677777753
No 207
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=49.76 E-value=34 Score=25.99 Aligned_cols=38 Identities=16% Similarity=0.077 Sum_probs=20.5
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
+|+++.+|.....+.-...+++.+++ .|+.+.++-+.+
T Consensus 109 rivi~v~S~~~~d~~~i~~~~~~lkk-~~I~v~vI~~G~ 146 (187)
T cd01452 109 RIVAFVGSPIEEDEKDLVKLAKRLKK-NNVSVDIINFGE 146 (187)
T ss_pred eEEEEEecCCcCCHHHHHHHHHHHHH-cCCeEEEEEeCC
Confidence 56777777643333223334445555 566666666554
No 208
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=49.51 E-value=1.4e+02 Score=24.19 Aligned_cols=110 Identities=11% Similarity=0.080 Sum_probs=52.3
Q ss_pred HHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCCccHHHHHHHHHHhcc
Q 028841 19 LAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGG 98 (203)
Q Consensus 19 la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~ 98 (203)
|...++..+.+ .|.++.++|..........+ .......+. ....+.+..+|.||+..|.. .++..++.+..
T Consensus 11 mG~~la~~L~~-~g~~V~~~dr~~~~~~~l~~-~g~~~~~s~-~~~~~~~~~~dvIi~~vp~~------~~~~v~~~l~~ 81 (298)
T TIGR00872 11 MGANIVRRLAK-RGHDCVGYDHDQDAVKAMKE-DRTTGVANL-RELSQRLSAPRVVWVMVPHG------IVDAVLEELAP 81 (298)
T ss_pred HHHHHHHHHHH-CCCEEEEEECCHHHHHHHHH-cCCcccCCH-HHHHhhcCCCCEEEEEcCch------HHHHHHHHHHh
Confidence 44444444444 57788887764322221111 111111111 00122345689999999873 44555555432
Q ss_pred cccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCc
Q 028841 99 LWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYT 147 (203)
Q Consensus 99 ~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~ 147 (203)
. ..+|+.+ +..+...... ...+.+.+...|..+++.+..
T Consensus 82 ~----l~~g~iv--id~st~~~~~----t~~~~~~~~~~g~~~vda~vs 120 (298)
T TIGR00872 82 T----LEKGDIV--IDGGNSYYKD----SLRRYKLLKEKGIHLLDCGTS 120 (298)
T ss_pred h----CCCCCEE--EECCCCCccc----HHHHHHHHHhcCCeEEecCCC
Confidence 1 1234432 2222221122 123456777789888887654
No 209
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.50 E-value=1.5e+02 Score=24.40 Aligned_cols=39 Identities=10% Similarity=0.118 Sum_probs=29.5
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
+..+|.......+..-++...+.+++ -|++++.+++.+.
T Consensus 34 ~LaiI~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~ 72 (294)
T PRK14187 34 CLIVILVGDDPASQLYVRNKQRKAEM-LGLRSETILLPST 72 (294)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 45666666565666778888888888 6999999999764
No 210
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=49.32 E-value=81 Score=23.86 Aligned_cols=44 Identities=32% Similarity=0.523 Sum_probs=27.9
Q ss_pred EEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEec
Q 028841 5 VYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGF 78 (203)
Q Consensus 5 ilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigs 78 (203)
|+||-+- .||...+++.+.+ .|++++++. + .+++.++|+||+.-
T Consensus 2 i~vid~g-~gn~~~~~~~l~~-----~g~~v~~~~--~----------------------~~~l~~~d~lilpG 45 (199)
T PRK13181 2 IAIIDYG-AGNLRSVANALKR-----LGVEAVVSS--D----------------------PEEIAGADKVILPG 45 (199)
T ss_pred EEEEeCC-CChHHHHHHHHHH-----CCCcEEEEc--C----------------------hHHhccCCEEEECC
Confidence 6676432 4667777776543 466777662 1 23577899999855
No 211
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=49.11 E-value=33 Score=30.87 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=23.9
Q ss_pred eEEEEEcCCcc--hHHHHHHHHHHhcccCCCceEE
Q 028841 4 KVYIVYYSMYG--HVEKLAEEIKKGASSVEGVEAK 36 (203)
Q Consensus 4 kilii~~S~~g--~T~~la~~i~~~~~~~~g~~v~ 36 (203)
|++++..+++| +|--.++.+++..++ .|+++.
T Consensus 2 ~ilavtacp~GiAht~mAaeaL~~AA~~-~G~~i~ 35 (563)
T PRK10712 2 KTLLIIDANLGQARAYMAKTLLGAAAAK-AGLEII 35 (563)
T ss_pred CeEEEecCCCcHHHHHHHHHHHHHHHHH-CCCccc
Confidence 78888888887 565566777777777 677664
No 212
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=48.96 E-value=1.6e+02 Score=24.69 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=16.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHH
Q 028841 173 GSRQPTELELEQAFHQGKHIA 193 (203)
Q Consensus 173 ~~~~~~~~~~~~~~~~g~~l~ 193 (203)
++.-.++|..+++.++++..-
T Consensus 166 ~~~~A~ee~i~~~~el~~~~~ 186 (341)
T TIGR01724 166 GKEMATEEQISKCVELAKSTG 186 (341)
T ss_pred ccccCCHHHHHHHHHHHHHhC
Confidence 445678999999999987654
No 213
>PF07881 Fucose_iso_N1: L-fucose isomerase, first N-terminal domain; InterPro: IPR012888 Proteins containing this domain are similar to L-fucose isomerase expressed by Escherichia coli (P11552 from SWISSPROT, 5.3.1.3 from EC). This enzyme corresponds to glucose-6-phosphate isomerase in glycolysis, and converts an aldo-hexose to a ketose to prepare it for aldol cleavage. The enzyme is a hexamer, with each subunit being wedge-shaped and composed of three domains. Both domains 1 and 2 contain central parallel beta-sheets with surrounding alpha helices. Domain 1 demonstrates the beta-alpha-beta-alpha- beta Rossman fold. The active centre is shared between pairs of subunits related along the molecular three-fold axis, with domains 2 and 3 from one subunit providing most of the substrate-contacting residues, and domain 1 from the adjacent subunit contributing some other residues []. ; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 3A9R_A 3A9T_C 3A9S_C 1FUI_E.
Probab=48.82 E-value=48 Score=24.77 Aligned_cols=112 Identities=13% Similarity=0.043 Sum_probs=49.6
Q ss_pred ceEEEEEcC---Ccc-------hHHHHHHHHHHhcccC----CCceEEEEEcCCCC--cHHHhccCCCCCCCCCCCCChh
Q 028841 3 TKVYIVYYS---MYG-------HVEKLAEEIKKGASSV----EGVEAKLWQVPETL--PEEVLGKMSAPPKSDVPIITPN 66 (203)
Q Consensus 3 ~kilii~~S---~~g-------~T~~la~~i~~~~~~~----~g~~v~~~~l~~~~--~~~~~~~~~~~~~~d~~~~~~~ 66 (203)
.||-|+-.| +.| .|..+++.+++.+++. .|.+++++-....- +.+.-. ..+
T Consensus 4 pkIGIrp~iDGR~~gVresLe~~tm~ma~~~a~ll~~~l~~~~G~~Ve~Viad~~Iggv~eAa~-------------~ae 70 (171)
T PF07881_consen 4 PKIGIRPTIDGRRGGVRESLEEQTMNMAKAVAELLEENLRYPDGSPVECVIADTTIGGVAEAAA-------------CAE 70 (171)
T ss_dssp -EEEEEEB----TTTHHHHHHHHHHHHHHHHHHHHHHH-B-TTS-B--EEE-SS-B-SHHHHHH-------------HHH
T ss_pred CeEEEEEeecCCchhHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeeEEEECCCcccCHHHHHH-------------HHH
Confidence 477777776 234 7888888888887761 36677766544321 111100 023
Q ss_pred hh--hhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEe
Q 028841 67 EL--AEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFV 142 (203)
Q Consensus 67 ~l--~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v 142 (203)
++ ...+..|..+|+|.+.--- +|.- ....|++..|.....+| ... +......+.+.|....
T Consensus 71 ~f~~~~V~~titvtpcWcy~~et-----md~~-------~~~p~aiwgfngterPG-aVy--LaAa~aa~~Q~Gip~f 133 (171)
T PF07881_consen 71 KFKREGVGVTITVTPCWCYGSET-----MDMD-------PNTPKAIWGFNGTERPG-AVY--LAAALAAHNQKGIPAF 133 (171)
T ss_dssp HHHCCTEEEEEEEESS---HHHH-----S----------TTS-EEEEE---SSS-H-HHH--HHHHHHHHHHCT---E
T ss_pred HHHHcCCCEEEEEEeeeecchhh-----hccC-------cCCCccEEeecCCCCCc-HHH--HHHHHHHHhcCCCcce
Confidence 44 4567889999999753211 2221 24567777776654443 211 2223344555565544
No 214
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=48.75 E-value=37 Score=25.11 Aligned_cols=19 Identities=16% Similarity=-0.163 Sum_probs=13.8
Q ss_pred hhhhhhcCeeEEeccccCC
Q 028841 65 PNELAEADGFVFGFPTRFG 83 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~ 83 (203)
.+.+++||.||.+.+.-+.
T Consensus 74 ~~~~~~ADIVVsa~G~~~~ 92 (160)
T PF02882_consen 74 QEITRRADIVVSAVGKPNL 92 (160)
T ss_dssp HHHHTTSSEEEE-SSSTT-
T ss_pred cceeeeccEEeeeeccccc
Confidence 4678999999999877543
No 215
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=48.61 E-value=1.5e+02 Score=24.25 Aligned_cols=63 Identities=16% Similarity=0.017 Sum_probs=40.2
Q ss_pred hhhhh---cCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEe
Q 028841 66 NELAE---ADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFV 142 (203)
Q Consensus 66 ~~l~~---aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v 142 (203)
+++.+ -|..|+..| +..+-..++.+. -+|-+.+++.|+|-. .+. ..++.+.....|+.++
T Consensus 58 ~dlp~~~~~DlAvi~vp------~~~v~~~l~e~~-------~~gvk~avI~s~Gf~---~~~-~~~l~~~a~~~girvl 120 (291)
T PRK05678 58 AEAVEATGANASVIYVP------PPFAADAILEAI-------DAGIDLIVCITEGIP---VLD-MLEVKAYLERKKTRLI 120 (291)
T ss_pred HHHhhccCCCEEEEEcC------HHHHHHHHHHHH-------HCCCCEEEEECCCCC---HHH-HHHHHHHHHHcCCEEE
Confidence 44444 599999998 344445555543 256666777776542 211 1257777788999999
Q ss_pred cCC
Q 028841 143 PIG 145 (203)
Q Consensus 143 ~~~ 145 (203)
|+.
T Consensus 121 GPN 123 (291)
T PRK05678 121 GPN 123 (291)
T ss_pred CCC
Confidence 976
No 216
>COG2454 Uncharacterized conserved protein [Function unknown]
Probab=48.25 E-value=32 Score=26.46 Aligned_cols=71 Identities=17% Similarity=0.134 Sum_probs=45.7
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFG 83 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~ 83 (203)
.+.+++.++.+++..++..+.+.+++ .+++.+..-+...+.. ....+-+..+|.+|+-+-.++-
T Consensus 130 ~vi~L~d~~vs~SGel~~~i~~~mK~-~~I~g~~~lvk~~D~e---------------Lk~~e~VaTsD~~IIdsv~~vV 193 (211)
T COG2454 130 SVIFLFDAPVSKSGELAGRIEEKMKS-LGIPGEASLVKNADFE---------------LKELEVVATSDSGIIDSVKRVV 193 (211)
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHh-cCCCceeEeccCcCHH---------------HHhcCceeecCeeeeeehhHHH
Confidence 45566677777778888888888776 5665554444332211 0013456789999999977777
Q ss_pred ccHHHHH
Q 028841 84 MMAAQFK 90 (203)
Q Consensus 84 ~~~~~~k 90 (203)
.+|..+-
T Consensus 194 di~~~i~ 200 (211)
T COG2454 194 DIPAEIM 200 (211)
T ss_pred hhHHHHH
Confidence 7776544
No 217
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=48.20 E-value=1.8e+02 Score=24.99 Aligned_cols=34 Identities=21% Similarity=0.124 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
|++||||+-++.. +..+.+.+++ .|..+..++..
T Consensus 1 ~~~~ililg~g~~------~~~~~~~a~~-lG~~~v~~~~~ 34 (450)
T PRK06111 1 MFQKVLIANRGEI------AVRIIRTCQK-LGIRTVAIYSE 34 (450)
T ss_pred CcceEEEECCcHH------HHHHHHHHHH-cCCeEEEEech
Confidence 7889999876643 3344445555 57787777643
No 218
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=47.79 E-value=31 Score=28.52 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=28.3
Q ss_pred eEEEEEcCC-cchHHHHHHHHHHhcccCCCceEEEEEc
Q 028841 4 KVYIVYYSM-YGHVEKLAEEIKKGASSVEGVEAKLWQV 40 (203)
Q Consensus 4 kilii~~S~-~g~T~~la~~i~~~~~~~~g~~v~~~~l 40 (203)
||++++-+. .|-.++++..+++.+.+ .|++|+++-.
T Consensus 2 kIl~~~~~~~~gG~e~~~~~la~~L~~-~G~~V~v~~~ 38 (392)
T cd03805 2 RVAFIHPDLGIGGAERLVVDAALALQS-RGHEVTIYTS 38 (392)
T ss_pred eEEEECCCCCCchHHHHHHHHHHHHHh-CCCeEEEEcC
Confidence 899998764 45567777888888887 7999998864
No 219
>PRK05670 anthranilate synthase component II; Provisional
Probab=47.72 E-value=1.2e+02 Score=22.75 Aligned_cols=32 Identities=13% Similarity=0.195 Sum_probs=21.2
Q ss_pred EEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 5 VYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 5 ilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
||||-.- ...|..+++.+.+ .|.+++++....
T Consensus 2 iliid~~-d~f~~~i~~~l~~-----~g~~~~v~~~~~ 33 (189)
T PRK05670 2 ILLIDNY-DSFTYNLVQYLGE-----LGAEVVVYRNDE 33 (189)
T ss_pred EEEEECC-CchHHHHHHHHHH-----CCCcEEEEECCC
Confidence 6776432 4567778777765 367888887653
No 220
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=47.62 E-value=78 Score=27.39 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=15.8
Q ss_pred CCceEEEEEc-CC--cchHHHHHHHHHH
Q 028841 1 MATKVYIVYY-SM--YGHVEKLAEEIKK 25 (203)
Q Consensus 1 Mm~kilii~~-S~--~g~T~~la~~i~~ 25 (203)
||+|+.|+.. -+ ...|+.|+..+.+
T Consensus 2 ~~~~~~i~t~GC~~N~~ds~~~~~~l~~ 29 (444)
T PRK14325 2 MMKKLYIKTYGCQMNEYDSSKMADLLGA 29 (444)
T ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 7778877753 32 3457777776643
No 221
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.52 E-value=1.5e+02 Score=24.11 Aligned_cols=40 Identities=15% Similarity=0.128 Sum_probs=30.5
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
++..+|......-+..-++...+.+++ -|++++++++.+.
T Consensus 31 P~LaiI~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~ 70 (282)
T PRK14182 31 TGLTVVRVGDDPASAIYVRGKRKDCEE-VGITSVEHHLPAT 70 (282)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 356677666666677778888888888 6999999999665
No 222
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=47.42 E-value=87 Score=21.74 Aligned_cols=40 Identities=23% Similarity=0.042 Sum_probs=22.3
Q ss_pred hhhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCC
Q 028841 65 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGS 118 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~ 118 (203)
.+-+..+|.+|-.| .|..+...++... -.|++ .+++|.|+
T Consensus 62 ~~~~~~~DVvIDfT------~p~~~~~~~~~~~-------~~g~~-~ViGTTG~ 101 (124)
T PF01113_consen 62 EELLEEADVVIDFT------NPDAVYDNLEYAL-------KHGVP-LVIGTTGF 101 (124)
T ss_dssp HHHTTH-SEEEEES-------HHHHHHHHHHHH-------HHT-E-EEEE-SSS
T ss_pred HHhcccCCEEEEcC------ChHHhHHHHHHHH-------hCCCC-EEEECCCC
Confidence 34566799888766 5666666666653 13555 55666665
No 223
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=47.25 E-value=84 Score=22.68 Aligned_cols=62 Identities=10% Similarity=-0.067 Sum_probs=38.9
Q ss_pred CCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccCCCCCccceecCCCCCCCCHHHHH
Q 028841 104 QLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELE 183 (203)
Q Consensus 104 ~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 183 (203)
.++||++.+++--++..+.. +...+...|..++-....| | .. ......|-++.+
T Consensus 2 ~l~gkKviiiGdRDGiPgpA------ie~c~~~~gaevvfs~TeC-F--------Vc-----------taagaMDLEnQ~ 55 (150)
T PF04723_consen 2 ILEGKKVIIIGDRDGIPGPA------IEECVKTAGAEVVFSSTEC-F--------VC-----------TAAGAMDLENQQ 55 (150)
T ss_pred ccCCcEEEEEecCCCCCcHH------HHHHHHhcCceEEEEeeeE-E--------Ee-----------cccccccHHHHH
Confidence 47899999998766554432 4467777788887543322 1 11 111366778888
Q ss_pred HHHHHHHH
Q 028841 184 QAFHQGKH 191 (203)
Q Consensus 184 ~~~~~g~~ 191 (203)
+.++++++
T Consensus 56 rvk~~aEk 63 (150)
T PF04723_consen 56 RVKDLAEK 63 (150)
T ss_pred HHHHHHHh
Confidence 87777765
No 224
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=47.20 E-value=1.1e+02 Score=23.48 Aligned_cols=44 Identities=5% Similarity=-0.056 Sum_probs=27.1
Q ss_pred hhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEe
Q 028841 67 ELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYS 115 (203)
Q Consensus 67 ~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t 115 (203)
-+..+|++|+..-+-...--..++.|++.+.. ...+.++.++++
T Consensus 82 ~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~-----~~~~~piilvgN 125 (219)
T PLN03071 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-----VCENIPIVLCGN 125 (219)
T ss_pred HcccccEEEEEEeCCCHHHHHHHHHHHHHHHH-----hCCCCcEEEEEE
Confidence 46788999887555444333455677776642 134567776665
No 225
>PRK08818 prephenate dehydrogenase; Provisional
Probab=47.12 E-value=36 Score=28.86 Aligned_cols=16 Identities=38% Similarity=0.576 Sum_probs=13.8
Q ss_pred hhhhhcCeeEEecccc
Q 028841 66 NELAEADGFVFGFPTR 81 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y 81 (203)
+.+.++|.||+++|+.
T Consensus 47 ~~v~~aDlVilavPv~ 62 (370)
T PRK08818 47 TLLQRADVLIFSAPIR 62 (370)
T ss_pred HHhcCCCEEEEeCCHH
Confidence 4578999999999985
No 226
>COG1736 DPH2 Diphthamide synthase subunit DPH2 [Translation, ribosomal structure and biogenesis]
Probab=47.04 E-value=59 Score=27.33 Aligned_cols=43 Identities=26% Similarity=0.222 Sum_probs=35.0
Q ss_pred ceEEEEEcCCcc-hHHHHHHHHHHhcccCCCceEEEEEcCCCCcH
Q 028841 3 TKVYIVYYSMYG-HVEKLAEEIKKGASSVEGVEAKLWQVPETLPE 46 (203)
Q Consensus 3 ~kilii~~S~~g-~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~ 46 (203)
+++-||.+|..| +...+++.+.+.+.+ .|.++.++-+.+..++
T Consensus 238 ~~~giiv~tk~gQ~r~~~~~~l~k~~~~-~g~~~~li~~~~i~p~ 281 (347)
T COG1736 238 KSFGIIVSTKGGQRRLEVARELVKLLKE-AGKEVYLIVVDEISPD 281 (347)
T ss_pred CeEEEEEecccccCcHHHHHHHHHHHHH-cCCceEEEEecCCCHH
Confidence 467888999766 688899999999999 7888888888776543
No 227
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=46.86 E-value=85 Score=24.11 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=16.6
Q ss_pred hhhhhhcCeeEEeccccCCccHHHHHHH
Q 028841 65 PNELAEADGFVFGFPTRFGMMAAQFKAF 92 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~~k~~ 92 (203)
.+.+.+||+|+++- |+....++.|
T Consensus 75 ~~~l~~ad~I~l~G----G~~~~~~~~l 98 (212)
T cd03146 75 LDALLEADVIYVGG----GNTFNLLAQW 98 (212)
T ss_pred HHHHhcCCEEEECC----chHHHHHHHH
Confidence 56899999999975 4444444444
No 228
>PRK07567 glutamine amidotransferase; Provisional
Probab=46.83 E-value=63 Score=25.49 Aligned_cols=13 Identities=31% Similarity=0.736 Sum_probs=9.3
Q ss_pred hhhhcCeeEEe-cc
Q 028841 67 ELAEADGFVFG-FP 79 (203)
Q Consensus 67 ~l~~aD~iiig-sP 79 (203)
++..+|+||+. +|
T Consensus 48 ~~~~~dgvIi~Gg~ 61 (242)
T PRK07567 48 DLDDYSGVIVGGSP 61 (242)
T ss_pred CHhhccEEEEcCCC
Confidence 57788988664 55
No 229
>TIGR00090 iojap_ybeB iojap-like ribosome-associated protein. This model describes a widely distributed family of bacterial proteins related to iojap from plants. It includes YbeB from E. coli. The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells. More recent work in bacteria suggests that the bacterial iojap-related protein physically associates with ribosomes. The function remains unknown.
Probab=46.40 E-value=48 Score=22.28 Aligned_cols=48 Identities=23% Similarity=0.166 Sum_probs=29.5
Q ss_pred HHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCCccHHHHHHHHHHh
Q 028841 21 EEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDAT 96 (203)
Q Consensus 21 ~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~ 96 (203)
+.+++.+.+..+.++.++|+.+.. .-+|.+||+|-.-. .++++..+.+
T Consensus 3 ~~i~~~l~~kka~dI~vldv~~~~------------------------~~~dy~VI~Tg~S~----rh~~aia~~v 50 (99)
T TIGR00090 3 ELIVEALDDKKAEDIVVLDVRGKS------------------------SIADYFVIASGTSS----RHVKAIADNV 50 (99)
T ss_pred HHHHHHHHHcCCCCEEEEECCCCC------------------------cccCEEEEEEeCCH----HHHHHHHHHH
Confidence 444555544356689999998642 35689999985443 4444444443
No 230
>PRK10026 arsenate reductase; Provisional
Probab=46.25 E-value=60 Score=23.46 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=23.3
Q ss_pred eEEEEEcCC-cchHHHHHHHHHHhcccCCCceEEEEEcCCCCc
Q 028841 4 KVYIVYYSM-YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLP 45 (203)
Q Consensus 4 kilii~~S~-~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~ 45 (203)
+|. ||+.+ .+.+++..+.+.+ .|++++++|+.+..+
T Consensus 3 ~i~-iY~~p~Cst~RKA~~wL~~-----~gi~~~~~d~~~~pp 39 (141)
T PRK10026 3 NIT-IYHNPACGTSRNTLEMIRN-----SGTEPTIIHYLETPP 39 (141)
T ss_pred EEE-EEeCCCCHHHHHHHHHHHH-----CCCCcEEEeeeCCCc
Confidence 444 56655 4566665555543 588999999977654
No 231
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=45.98 E-value=45 Score=24.31 Aligned_cols=76 Identities=13% Similarity=0.038 Sum_probs=41.5
Q ss_pred HHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCC--CChhhhhhcCeeEEeccccCCccHHHHHHHHHH
Q 028841 18 KLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPI--ITPNELAEADGFVFGFPTRFGMMAAQFKAFLDA 95 (203)
Q Consensus 18 ~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~--~~~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~ 95 (203)
.+...+.+.+.+ .|+++..+-=+....+. ...-....-|+.+ ...+.+..+|.||...+.+... ....+++++.
T Consensus 9 ~vG~~l~~~L~~-~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~~-~~~~~~~~~a 84 (183)
T PF13460_consen 9 FVGRALAKQLLR-RGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPKD-VDAAKNIIEA 84 (183)
T ss_dssp HHHHHHHHHHHH-TTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTTH-HHHHHHHHHH
T ss_pred hHHHHHHHHHHH-CCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhhhccc-cccccccccc
Confidence 344555555555 56777766543322221 0000000112211 1245678899999999887776 5567888887
Q ss_pred hc
Q 028841 96 TG 97 (203)
Q Consensus 96 ~~ 97 (203)
+.
T Consensus 85 ~~ 86 (183)
T PF13460_consen 85 AK 86 (183)
T ss_dssp HH
T ss_pred cc
Confidence 74
No 232
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=45.73 E-value=1.5e+02 Score=23.51 Aligned_cols=66 Identities=18% Similarity=0.036 Sum_probs=35.7
Q ss_pred hhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCC-CC----hHHHHHHHHHHHHHcCcEEec
Q 028841 69 AEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQG-GG----QETTALTAITQLVHHGMIFVP 143 (203)
Q Consensus 69 ~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~-~~----~~~~~~~l~~~l~~~g~~~v~ 143 (203)
.++|++||+.|.--.+.. -...||+.- .+|-++.++....... .+ .......|...|..+|+.+-.
T Consensus 196 ~~~d~Lvi~~P~~~ls~~--e~~~l~~yl-------~~GG~ll~~~d~~~~~~~~~~~~~~~~~~~L~~lL~~~Gi~~~~ 266 (271)
T PF09822_consen 196 DDADVLVIAGPKTDLSEE--ELYALDQYL-------MNGGKLLILLDPFSVELQGLWAGGAQRDSNLNDLLEEYGIRINP 266 (271)
T ss_pred CCCCEEEEECCCCCCCHH--HHHHHHHHH-------HcCCeEEEEECCcccccccccccccccccCHHHHHHHcCCEeCC
Confidence 789999999999855533 234444431 3455555554432111 00 000012366778888877643
No 233
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=45.55 E-value=1.2e+02 Score=22.31 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=24.1
Q ss_pred hhcCeeEEecccc--CCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 69 AEADGFVFGFPTR--FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 69 ~~aD~iiigsP~y--~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
.++|+||+....- +....+.++.|+.+.. -.+|+++.++++
T Consensus 75 ~~~D~liv~GG~~~~~~~~~~~~~~~l~~~~-------~~~k~i~~ic~G 117 (180)
T cd03169 75 DDYDALVIPGGRAPEYLRLDEKVLAIVRHFA-------EANKPVAAICHG 117 (180)
T ss_pred hHCCEEEEcCCCChhhhccCHHHHHHHHHHH-------HcCCEEEEECcH
Confidence 4789887765311 1112345677777653 357777777764
No 234
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=45.40 E-value=1.4e+02 Score=24.01 Aligned_cols=25 Identities=8% Similarity=0.228 Sum_probs=17.1
Q ss_pred hhhhhcCeeEEeccccCCccHHHHHHHHHHh
Q 028841 66 NELAEADGFVFGFPTRFGMMAAQFKAFLDAT 96 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~ 96 (203)
+.+.++|.||++.|. ..+..+++.+
T Consensus 59 e~~~~aDiIiLavkP------~~~~~vl~~l 83 (272)
T PRK12491 59 EVANSADILILSIKP------DLYSSVINQI 83 (272)
T ss_pred HHHhhCCEEEEEeCh------HHHHHHHHHH
Confidence 456899999999984 3444444444
No 235
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=45.39 E-value=1.2e+02 Score=25.20 Aligned_cols=70 Identities=16% Similarity=0.164 Sum_probs=45.7
Q ss_pred cchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecccc-CCccHHHHHH
Q 028841 13 YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR-FGMMAAQFKA 91 (203)
Q Consensus 13 ~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y-~~~~~~~~k~ 91 (203)
+|++-..+...++.+++ .|++++++|+....|-+. +...+.+..++.||+.-=-+ .|++.+++..
T Consensus 209 ~G~~~~~a~eAa~~L~~-~Gi~v~vi~~~~l~Pld~-------------~~i~~~~~~~~~vv~vEe~~~~gGlg~~la~ 274 (327)
T PRK09212 209 FSIQVKLALEAAELLEK-EGISVEVIDLRTLRPLDT-------------ETIIESVKKTNRLVVVEEGWPFAGVGAEIAA 274 (327)
T ss_pred ccHHHHHHHHHHHHHHh-cCCcEEEEEEecCCCCCH-------------HHHHHHHHhCCeEEEEcCCCCCCCHHHHHHH
Confidence 35555666666666766 689999999987754110 00134677888887664444 4778888888
Q ss_pred HHHHh
Q 028841 92 FLDAT 96 (203)
Q Consensus 92 ~ld~~ 96 (203)
++...
T Consensus 275 ~l~~~ 279 (327)
T PRK09212 275 LIMKE 279 (327)
T ss_pred HHHHh
Confidence 87653
No 236
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=45.32 E-value=1.2e+02 Score=22.53 Aligned_cols=42 Identities=21% Similarity=0.203 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEE-eccc
Q 028841 16 VEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVF-GFPT 80 (203)
Q Consensus 16 T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iii-gsP~ 80 (203)
|..+++.+.+ .|++++++....... ...++..+|+||+ |.|-
T Consensus 11 ~~~~~~~l~~-----~G~~~~~~~~~~~~~------------------~~~~~~~~dgvil~gG~~ 53 (184)
T cd01743 11 TYNLVQYLRE-----LGAEVVVVRNDEITL------------------EELELLNPDAIVISPGPG 53 (184)
T ss_pred HHHHHHHHHH-----cCCceEEEeCCCCCH------------------HHHhhcCCCEEEECCCCC
Confidence 4455555543 477888888754321 0124678999877 5553
No 237
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=45.20 E-value=1.4e+02 Score=24.52 Aligned_cols=17 Identities=24% Similarity=0.153 Sum_probs=14.0
Q ss_pred hhhhhcCeeEEeccccC
Q 028841 66 NELAEADGFVFGFPTRF 82 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~ 82 (203)
+.+..+|.||+..|.+.
T Consensus 69 ~~~~~~D~vil~vk~~~ 85 (341)
T PRK08229 69 AALATADLVLVTVKSAA 85 (341)
T ss_pred hhccCCCEEEEEecCcc
Confidence 45678999999999774
No 238
>KOG2728 consensus Uncharacterized conserved protein with similarity to phosphopantothenoylcysteine synthetase/decarboxylase [General function prediction only]
Probab=45.11 E-value=33 Score=27.47 Aligned_cols=34 Identities=18% Similarity=0.338 Sum_probs=24.8
Q ss_pred cccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCC
Q 028841 79 PTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGS 118 (203)
Q Consensus 79 P~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~ 118 (203)
|.+.......++.|+++.. .+.|+++++++++|.
T Consensus 8 p~~~~d~~s~~~eFi~~q~------s~~~rrIVlVTSGGT 41 (302)
T KOG2728|consen 8 PESLDDPGSLIEEFIKLQA------SLQGRRIVLVTSGGT 41 (302)
T ss_pred cccccchhHHHHHHHHHHh------hccCceEEEEecCCe
Confidence 5555666678999999975 467788787776654
No 239
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=45.07 E-value=1.5e+02 Score=23.20 Aligned_cols=111 Identities=23% Similarity=0.217 Sum_probs=56.6
Q ss_pred EEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCCccH
Q 028841 7 IVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMA 86 (203)
Q Consensus 7 ii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~~~~ 86 (203)
|||.-.+| +++.+.|.+...- ...+.++++.+..++ .+ |.|+...+++.++|.+|.-+ --|
T Consensus 2 vi~~G~yG--eR~~~~i~~~~~~--~~~v~~~~~p~~l~e-fI---------d~pee~Lp~i~~~Dl~I~y~-----lHP 62 (217)
T PF02593_consen 2 VIYDGKYG--ERVIENIKNYFDF--CRSVIVYEIPEDLPE-FI---------DDPEEYLPKIPEADLLIAYG-----LHP 62 (217)
T ss_pred eeeeCcch--HHHHHHHHhcCCC--CceEEEEeCCccccc-cc---------cChHHHccCCCCCCEEEEec-----cCc
Confidence 55554555 5667777665432 112777777764221 11 11111123488999988521 122
Q ss_pred HHHHHHHHHhcccccccCCCCCceEEEEecCCCCC-ChHHHHHHHHHHHHHcCcEEecCCCcC
Q 028841 87 AQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGG-GQETTALTAITQLVHHGMIFVPIGYTF 148 (203)
Q Consensus 87 ~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~-~~~~~~~~l~~~l~~~g~~~v~~~~~~ 148 (203)
..+-.+.+.+. . .|-++.++.+ |.+. +. ...+.+.+...|..++-.-..|
T Consensus 63 Dl~~~l~~~~~------e-~g~kavIvp~--~~~~~g~---~~~lk~~~e~~gi~~~~P~~~C 113 (217)
T PF02593_consen 63 DLTYELPEIAK------E-AGVKAVIVPS--ESPKPGL---RRQLKKQLEEFGIEVEFPKPFC 113 (217)
T ss_pred hhHHHHHHHHH------H-cCCCEEEEec--CCCccch---HHHHHHHHHhcCceeecCcccc
Confidence 23333334332 2 4555444433 3332 32 3457888889897777555444
No 240
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=44.72 E-value=1.2e+02 Score=22.04 Aligned_cols=66 Identities=24% Similarity=0.299 Sum_probs=45.1
Q ss_pred EEEEcCCc-chHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCCc
Q 028841 6 YIVYYSMY-GHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGM 84 (203)
Q Consensus 6 lii~~S~~-g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~~ 84 (203)
+++|.|++ |....-++.+. . .|++|......+... +. .++ -...++..+...||.--.--|+
T Consensus 28 ~~vyksPnCGCC~~w~~~mk----~-~Gf~Vk~~~~~d~~a---lK-------~~~--gIp~e~~SCHT~VI~Gy~vEGH 90 (149)
T COG3019 28 MVVYKSPNCGCCDEWAQHMK----A-NGFEVKVVETDDFLA---LK-------RRL--GIPYEMQSCHTAVINGYYVEGH 90 (149)
T ss_pred EEEEeCCCCccHHHHHHHHH----h-CCcEEEEeecCcHHH---HH-------Hhc--CCChhhccccEEEEcCEEEecc
Confidence 56677864 87776666654 3 689999888776531 11 011 0145788999999998888899
Q ss_pred cHHH
Q 028841 85 MAAQ 88 (203)
Q Consensus 85 ~~~~ 88 (203)
+|..
T Consensus 91 VPa~ 94 (149)
T COG3019 91 VPAE 94 (149)
T ss_pred CCHH
Confidence 9964
No 241
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=44.60 E-value=1.1e+02 Score=22.29 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=17.4
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHh
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKG 26 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~ 26 (203)
|+||++|=.+..|.|- |++.+...
T Consensus 1 MkrimliG~~g~GKTT-L~q~L~~~ 24 (143)
T PF10662_consen 1 MKRIMLIGPSGSGKTT-LAQALNGE 24 (143)
T ss_pred CceEEEECCCCCCHHH-HHHHHcCC
Confidence 6788887777889874 66666543
No 242
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=44.56 E-value=1.3e+02 Score=28.02 Aligned_cols=33 Identities=15% Similarity=0.253 Sum_probs=23.1
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
++|+||-+- .+++..+++.+.+ .|++++++...
T Consensus 517 ~~IlVID~g-ds~~~~l~~~L~~-----~G~~v~vv~~~ 549 (717)
T TIGR01815 517 RRILLVDHE-DSFVHTLANYLRQ-----TGASVTTLRHS 549 (717)
T ss_pred CEEEEEECC-ChhHHHHHHHHHH-----CCCeEEEEECC
Confidence 478888655 5677777777755 46788877654
No 243
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=44.43 E-value=72 Score=25.11 Aligned_cols=39 Identities=18% Similarity=0.132 Sum_probs=24.9
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCC
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETL 44 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~ 44 (203)
|++|+.|+-.--+-.-..++.++. . .|.+++.+...+..
T Consensus 1 ~~~kvaVi~fpGtN~d~d~~~A~~-~----aG~~~~~V~~~d~~ 39 (231)
T COG0047 1 ARPKVAVLRFPGTNCDYDMAAAFE-R----AGFEAEDVWHSDLL 39 (231)
T ss_pred CCceEEEEEcCCcCchHHHHHHHH-H----cCCCceEEEeeecc
Confidence 345998887764433445677765 2 46677777777653
No 244
>CHL00194 ycf39 Ycf39; Provisional
Probab=44.30 E-value=57 Score=26.52 Aligned_cols=72 Identities=15% Similarity=0.158 Sum_probs=33.8
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCC-CCCCCCC--CCChhhhhhcCeeEEeccc
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSA-PPKSDVP--IITPNELAEADGFVFGFPT 80 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~-~~~~d~~--~~~~~~l~~aD~iiigsP~ 80 (203)
||+|. |-|-.+...+.+.+.+ .|.+|..+.-....... ...... ....|+. +...+.+..+|.||..++.
T Consensus 2 kIlVt-----GatG~iG~~lv~~Ll~-~g~~V~~l~R~~~~~~~-l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~ 74 (317)
T CHL00194 2 SLLVI-----GATGTLGRQIVRQALD-EGYQVRCLVRNLRKASF-LKEWGAELVYGDLSLPETLPPSFKGVTAIIDASTS 74 (317)
T ss_pred EEEEE-----CCCcHHHHHHHHHHHH-CCCeEEEEEcChHHhhh-HhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCCC
Confidence 77773 3333455555555555 57787766432111110 000000 0111221 1123457788999887654
Q ss_pred cC
Q 028841 81 RF 82 (203)
Q Consensus 81 y~ 82 (203)
.+
T Consensus 75 ~~ 76 (317)
T CHL00194 75 RP 76 (317)
T ss_pred CC
Confidence 43
No 245
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=44.19 E-value=92 Score=20.53 Aligned_cols=40 Identities=15% Similarity=-0.025 Sum_probs=30.6
Q ss_pred hhhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEE
Q 028841 65 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFY 114 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~ 114 (203)
...+..+|.||+.|-.-.......+|..-.+ .++|+...-
T Consensus 43 ~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk----------~~ip~~~~~ 82 (97)
T PF10087_consen 43 PSKIKKADLVIVFTDYVSHNAMWKVKKAAKK----------YGIPIIYSR 82 (97)
T ss_pred HHhcCCCCEEEEEeCCcChHHHHHHHHHHHH----------cCCcEEEEC
Confidence 4588999999999988888888777766554 467866543
No 246
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.18 E-value=50 Score=27.24 Aligned_cols=37 Identities=14% Similarity=0.245 Sum_probs=28.8
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEE
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQ 39 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~ 39 (203)
|+||+|++-........+++.+.+-+.+ .|+++.+.+
T Consensus 5 ~~~I~iv~~~~~~~~~~~~~~l~~~L~~-~g~~v~~~~ 41 (306)
T PRK03372 5 SRRVLLVAHTGRDEATEAARRVAKQLGD-AGIGVRVLD 41 (306)
T ss_pred ccEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEee
Confidence 5679999887666677888999888877 688877654
No 247
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=43.83 E-value=69 Score=20.00 Aligned_cols=34 Identities=18% Similarity=0.357 Sum_probs=25.3
Q ss_pred EEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 8 VYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 8 i~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
+|++.-++.+.+...+.+.+.+ .|.+++++++.+
T Consensus 5 ~~a~~C~~C~~~~~~~~~~~~e-~~~~~~~~~v~~ 38 (76)
T TIGR00412 5 IYGTGCANCQMTEKNVKKAVEE-LGIDAEFEKVTD 38 (76)
T ss_pred EECCCCcCHHHHHHHHHHHHHH-cCCCeEEEEeCC
Confidence 4777678888888877777776 566788888764
No 248
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.80 E-value=1.8e+02 Score=23.85 Aligned_cols=41 Identities=10% Similarity=0.074 Sum_probs=31.0
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCC
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETL 44 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~ 44 (203)
++..+|......-+..-++...+.+++ .|++++++++.+.-
T Consensus 33 p~La~i~vg~~~~s~~Yv~~k~k~a~~-~Gi~~~~~~l~~~~ 73 (296)
T PRK14188 33 PGLAVVLVGEDPASQVYVRSKGKQTKE-AGMASFEHKLPADT 73 (296)
T ss_pred CeEEEEEeCCChhHHHHHHHHHHHHHH-cCCEEEEEECCCCC
Confidence 356677666666677778888888888 79999999987653
No 249
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.63 E-value=1.8e+02 Score=23.87 Aligned_cols=39 Identities=8% Similarity=0.036 Sum_probs=30.0
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
+.++|......-+..-++...+.+++ -|++++.+++.+.
T Consensus 34 ~LaiI~vgdd~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~ 72 (297)
T PRK14186 34 GLAVLRVGDDPASAVYVRNKEKACAR-VGIASFGKHLPAD 72 (297)
T ss_pred eEEEEEeCCChHHHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 46666666666667778888888888 7999999999654
No 250
>PRK05642 DNA replication initiation factor; Validated
Probab=43.46 E-value=50 Score=25.83 Aligned_cols=38 Identities=13% Similarity=0.087 Sum_probs=26.4
Q ss_pred eEEEEEcCC-cchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 4 KVYIVYYSM-YGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilii~~S~-~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
+.+++||+. .|.|. ++.++...+.+ .|..+.+++..+.
T Consensus 46 ~~l~l~G~~G~GKTH-Ll~a~~~~~~~-~~~~v~y~~~~~~ 84 (234)
T PRK05642 46 SLIYLWGKDGVGRSH-LLQAACLRFEQ-RGEPAVYLPLAEL 84 (234)
T ss_pred CeEEEECCCCCCHHH-HHHHHHHHHHh-CCCcEEEeeHHHH
Confidence 457788865 79986 57777776655 4667777776553
No 251
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=43.41 E-value=48 Score=26.10 Aligned_cols=39 Identities=18% Similarity=0.333 Sum_probs=30.2
Q ss_pred eEEEEEcCC--cchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 4 KVYIVYYSM--YGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilii~~S~--~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
||+++..+. .|..++.+..+++.+.+ .|.+|.++.....
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~-~g~~v~v~~~~~~ 41 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAE-KGHEVTIISLDKG 41 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHh-CCCeEEEEecCCC
Confidence 577877663 46777888888899887 6899999887655
No 252
>PRK08116 hypothetical protein; Validated
Probab=43.39 E-value=1.2e+02 Score=24.32 Aligned_cols=36 Identities=22% Similarity=0.281 Sum_probs=26.0
Q ss_pred EEEEEcCC-cchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 5 VYIVYYSM-YGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 5 ilii~~S~-~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
-++++|++ +|.|. +|.+|+..+.+ .|..+-+++..+
T Consensus 116 gl~l~G~~GtGKTh-La~aia~~l~~-~~~~v~~~~~~~ 152 (268)
T PRK08116 116 GLLLWGSVGTGKTY-LAACIANELIE-KGVPVIFVNFPQ 152 (268)
T ss_pred eEEEECCCCCCHHH-HHHHHHHHHHH-cCCeEEEEEHHH
Confidence 47788875 78885 67778887766 477777777654
No 253
>PRK13337 putative lipid kinase; Reviewed
Probab=43.26 E-value=1.2e+02 Score=24.66 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=26.7
Q ss_pred CceEEEEEcCCcc--hHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 2 ATKVYIVYYSMYG--HVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 2 m~kilii~~S~~g--~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
|+|+++|+-...| ...+....+.+.+.+ .|.+++++....
T Consensus 1 ~~r~~~I~Np~aG~~~~~~~~~~~~~~l~~-~~~~~~~~~t~~ 42 (304)
T PRK13337 1 MKRARIIYNPTSGRELFKKNLPDVLQKLEQ-AGYETSAHATTG 42 (304)
T ss_pred CceEEEEECCcccchhHHHHHHHHHHHHHH-cCCEEEEEEecC
Confidence 3588888765544 445566677777877 688877766543
No 254
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=43.13 E-value=15 Score=29.22 Aligned_cols=67 Identities=15% Similarity=0.177 Sum_probs=39.7
Q ss_pred eEEEEEcCC-cchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCC-CChhhhhhcCeeEEe
Q 028841 4 KVYIVYYSM-YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPI-ITPNELAEADGFVFG 77 (203)
Q Consensus 4 kilii~~S~-~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~-~~~~~l~~aD~iiig 77 (203)
+-+++||.+ .|.|. ||-+|...+.. .|+.|.++.+.+.- ..+-.... ++..+ .....+..+|.+||=
T Consensus 106 ~nl~l~G~~G~GKTh-La~Ai~~~l~~-~g~sv~f~~~~el~-~~Lk~~~~----~~~~~~~l~~~l~~~dlLIiD 174 (254)
T COG1484 106 ENLVLLGPPGVGKTH-LAIAIGNELLK-AGISVLFITAPDLL-SKLKAAFD----EGRLEEKLLRELKKVDLLIID 174 (254)
T ss_pred CcEEEECCCCCcHHH-HHHHHHHHHHH-cCCeEEEEEHHHHH-HHHHHHHh----cCchHHHHHHHhhcCCEEEEe
Confidence 346778875 68886 56666666666 69999999987752 11111000 00100 012348899999974
No 255
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=42.94 E-value=86 Score=19.86 Aligned_cols=39 Identities=10% Similarity=-0.040 Sum_probs=24.4
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
+|.+++.+.-+...++.+.+.+...+..|++.+.+|+.+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~ 40 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHA 40 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCC
Confidence 666655555677777666665543321377888888864
No 256
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.48 E-value=1.9e+02 Score=23.63 Aligned_cols=109 Identities=20% Similarity=0.288 Sum_probs=60.3
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHH-Hh---ccC-CCC---------C-CCCCCC--C--C
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEE-VL---GKM-SAP---------P-KSDVPI--I--T 64 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~-~~---~~~-~~~---------~-~~d~~~--~--~ 64 (203)
+..+|......-+..-++...+.+++ .|++++++++.+.-.++ +. ... ..+ | ..++.+ . .
T Consensus 32 ~Laii~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~ 110 (282)
T PRK14169 32 TLAVVLVGSDPASEVYVRNKQRRAED-IGVRSLMFRLPEATTQADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVIDA 110 (282)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHH-cCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhh
Confidence 45666666565667778888888888 79999999997753322 11 110 000 1 001100 0 0
Q ss_pred hhhhhhcCee--------EEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCC
Q 028841 65 PNELAEADGF--------VFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGS 118 (203)
Q Consensus 65 ~~~l~~aD~i--------iigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~ 118 (203)
....++-|++ ..+-|.|.-.-|..+-.+|++.. -.+.||.+.+++-+.-
T Consensus 111 I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~avi~lL~~~~-----i~l~Gk~vvViGrS~i 167 (282)
T PRK14169 111 IDPDKDVDGFSPVSVGRLWANEPTVVASTPYGIMALLDAYD-----IDVAGKRVVIVGRSNI 167 (282)
T ss_pred cCcccCcccCChhhhHHHhcCCCCCCCCCHHHHHHHHHHhC-----CCCCCCEEEEECCCcc
Confidence 1223455555 23444444444555556666543 2578999988876543
No 257
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=42.21 E-value=1.6e+02 Score=22.60 Aligned_cols=68 Identities=15% Similarity=0.202 Sum_probs=41.2
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEe----cc
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFG----FP 79 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiig----sP 79 (203)
+||+|- ...+.|..+++.+.+. |.++.++.=.+.... .-+-...|+||++ +|
T Consensus 3 ~IL~ID-NyDSFtyNLv~yl~~l-----g~~v~V~rnd~~~~~------------------~~~~~~pd~iviSPGPG~P 58 (191)
T COG0512 3 MILLID-NYDSFTYNLVQYLREL-----GAEVTVVRNDDISLE------------------LIEALKPDAIVISPGPGTP 58 (191)
T ss_pred eEEEEE-CccchHHHHHHHHHHc-----CCceEEEECCccCHH------------------HHhhcCCCEEEEcCCCCCh
Confidence 787763 2356788888888653 335555542222110 0122357999996 78
Q ss_pred ccCCccHHHHHHHHHH
Q 028841 80 TRFGMMAAQFKAFLDA 95 (203)
Q Consensus 80 ~y~~~~~~~~k~~ld~ 95 (203)
.=.|.....++.|-.+
T Consensus 59 ~d~G~~~~~i~~~~~~ 74 (191)
T COG0512 59 KDAGISLELIRRFAGR 74 (191)
T ss_pred HHcchHHHHHHHhcCC
Confidence 8777788888877443
No 258
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.17 E-value=1.9e+02 Score=23.73 Aligned_cols=40 Identities=15% Similarity=0.058 Sum_probs=31.4
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETL 44 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~ 44 (203)
+..+|..+...-+..-++...+.+++ -|++++++++.+.-
T Consensus 33 ~LaiI~vg~d~as~~Yv~~k~k~~~~-~Gi~~~~~~l~~~~ 72 (297)
T PRK14167 33 GLATVLMSDDPASETYVSMKQRDCEE-VGIEAIDVEIDPDA 72 (297)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCCC
Confidence 56677766666677788888888888 79999999998653
No 259
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=42.15 E-value=40 Score=27.42 Aligned_cols=34 Identities=24% Similarity=0.168 Sum_probs=26.7
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEE
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQ 39 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~ 39 (203)
||+|+.|...|+.. .+..+++.+.+ .|+++.++-
T Consensus 2 ~i~~~~g~~~g~~~-~~~~La~~L~~-~g~eV~vv~ 35 (348)
T TIGR01133 2 KVVLAAGGTGGHIF-PALAVAEELIK-RGVEVLWLG 35 (348)
T ss_pred eEEEEeCccHHHHh-HHHHHHHHHHh-CCCEEEEEe
Confidence 89998888888876 55667777777 688888874
No 260
>PLN02347 GMP synthetase
Probab=41.59 E-value=2.6e+02 Score=25.07 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=20.3
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEc
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQV 40 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l 40 (203)
.+|+||-+- .++|..+++.+.+ .|+.++++..
T Consensus 11 ~~IlIID~G-~~~t~~I~r~lre-----lgv~~~v~p~ 42 (536)
T PLN02347 11 DVVLILDYG-SQYTHLITRRVRE-----LGVYSLLLSG 42 (536)
T ss_pred CEEEEEECC-CcHHHHHHHHHHH-----CCCeEEEEEC
Confidence 368877432 3557778877764 4667777654
No 261
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=41.51 E-value=81 Score=23.95 Aligned_cols=44 Identities=20% Similarity=0.391 Sum_probs=27.8
Q ss_pred EEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEec
Q 028841 5 VYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGF 78 (203)
Q Consensus 5 ilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigs 78 (203)
|+||-+. -||...+.+.+.+ .|.++.+++ + .+++..+|+|||--
T Consensus 2 i~iid~g-~~n~~~v~~~l~~-----~g~~~~~~~--~----------------------~~~l~~~d~lilPG 45 (201)
T PRK13152 2 IALIDYK-AGNLNSVAKAFEK-----IGAINFIAK--N----------------------PKDLQKADKLLLPG 45 (201)
T ss_pred EEEEECC-CCcHHHHHHHHHH-----CCCeEEEEC--C----------------------HHHHcCCCEEEECC
Confidence 6666443 4677778877765 255666543 2 23577899999943
No 262
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=41.45 E-value=1e+02 Score=22.04 Aligned_cols=47 Identities=4% Similarity=-0.034 Sum_probs=27.2
Q ss_pred hhhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEe
Q 028841 65 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYS 115 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t 115 (203)
...+.++|++|+....-...--..++.|+..+... ...+.++.++++
T Consensus 70 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~p~iiv~n 116 (167)
T cd01867 70 TAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEH----ASEDVERMLVGN 116 (167)
T ss_pred HHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHh----CCCCCcEEEEEE
Confidence 34578999999987764322222345555554321 124567777775
No 263
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=41.40 E-value=64 Score=23.91 Aligned_cols=85 Identities=20% Similarity=0.205 Sum_probs=45.9
Q ss_pred CCceEEEEEc-CCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecc
Q 028841 1 MATKVYIVYY-SMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFP 79 (203)
Q Consensus 1 Mm~kilii~~-S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP 79 (203)
|| +|+-|.| |.+|.|- +.+.+...+.+ .|..|-++....-+++ ++ .+-+|.+ .-.=..||.+++.++
T Consensus 1 m~-~Il~ivG~k~SGKTT-Lie~lv~~L~~-~G~rVa~iKH~hh~~~--~D---~~GkDs~----r~~~aGa~~~v~~s~ 68 (161)
T COG1763 1 MM-KILGIVGYKNSGKTT-LIEKLVRKLKA-RGYRVATVKHAHHDFD--LD---KPGKDTY----RHRKAGADQVVVASD 68 (161)
T ss_pred CC-cEEEEEecCCCChhh-HHHHHHHHHHh-CCcEEEEEEecCCCCC--CC---CCCCccc----hhhccccceEEEecC
Confidence 66 7766665 5688884 67777777777 6887777665432210 00 0011111 112245677777777
Q ss_pred ccCCccH----HHHHHHHHHhc
Q 028841 80 TRFGMMA----AQFKAFLDATG 97 (203)
Q Consensus 80 ~y~~~~~----~~~k~~ld~~~ 97 (203)
..+.-+. ..+...+.++.
T Consensus 69 ~~~~~~~~~~~~~L~~vl~~l~ 90 (161)
T COG1763 69 HRTALMTRTPDRDLDAVLSRLD 90 (161)
T ss_pred CEEEEEEecCCcCHHHHHHhcC
Confidence 7654433 33345555554
No 264
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.30 E-value=2e+02 Score=23.54 Aligned_cols=39 Identities=15% Similarity=0.235 Sum_probs=29.9
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
+..+|......-+..-++...+.+++ .|++++.+++.+.
T Consensus 35 ~Laii~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~ 73 (285)
T PRK10792 35 GLAVVLVGSDPASQVYVASKRKACEE-VGFVSRSYDLPET 73 (285)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 45666666565677778888888888 7999999999764
No 265
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=41.29 E-value=81 Score=22.84 Aligned_cols=76 Identities=20% Similarity=0.328 Sum_probs=43.6
Q ss_pred eEEEEEcCC-----------cch--HHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhh
Q 028841 4 KVYIVYYSM-----------YGH--VEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAE 70 (203)
Q Consensus 4 kilii~~S~-----------~g~--T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~ 70 (203)
||+|++|.. +|+ -+.+-+.+.+...+ .|++++++.-... .+.++. ..+...+
T Consensus 2 ~IlvinGPNLn~LG~Rep~iYG~~tl~~i~~~~~~~a~~-~g~~v~~~QSN~E--Gelid~------------I~~a~~~ 66 (140)
T PF01220_consen 2 KILVINGPNLNLLGKREPEIYGTTTLEDIEQKCKETAAE-LGVEVEFFQSNHE--GELIDW------------IHEARDD 66 (140)
T ss_dssp EEEEEE-TTGGGTTTSSHHHHTSSHHHHHHHHHHHHHHH-TTEEEEEEE-SSH--HHHHHH------------HHHHTCT
T ss_pred EEEEEcCCCcccccCCCCCcCCcCCHHHHHHHHHHHHHH-CCCeEEEEecCCH--HHHHHH------------HHHHHhh
Confidence 999999973 343 34566677777776 6888887764321 122210 1234556
Q ss_pred cCeeEEeccccC-CccHHHHHHHHHHh
Q 028841 71 ADGFVFGFPTRF-GMMAAQFKAFLDAT 96 (203)
Q Consensus 71 aD~iiigsP~y~-~~~~~~~k~~ld~~ 96 (203)
+|+||+=.--|- .++ .+++.|..+
T Consensus 67 ~dgiIINpga~thtS~--Ai~DAl~~~ 91 (140)
T PF01220_consen 67 VDGIIINPGAYTHTSI--AIRDALKAI 91 (140)
T ss_dssp TSEEEEE-GGGGHT-H--HHHHHHHCC
T ss_pred CCEEEEccchhccccH--HHHHHHHcC
Confidence 899999877773 333 456655554
No 266
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=41.14 E-value=1.2e+02 Score=25.38 Aligned_cols=38 Identities=16% Similarity=0.205 Sum_probs=27.7
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
+|+.|+|-|.+|. ..++.+.+.+++ .|.++..+.+...
T Consensus 125 k~vaiiYd~~~~~--~~lq~l~~~~~~-~g~~v~~~~~~~~ 162 (371)
T cd06388 125 NRFVFLYDTDRGY--SILQAIMEKAGQ-NGWQVSAICVENF 162 (371)
T ss_pred eEEEEEecCCccH--HHHHHHHHhhHh-cCCeeeeEEeccC
Confidence 5789999887776 348888888887 6877776555443
No 267
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=41.09 E-value=1.4e+02 Score=23.94 Aligned_cols=67 Identities=16% Similarity=0.116 Sum_probs=34.3
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecccc
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR 81 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y 81 (203)
||.|| |. | .|...++..+.+ .|.+|..+|......+........ +.. ....+.+.++|.||++.|..
T Consensus 2 ~I~II-G~--G---~mG~sla~~L~~-~g~~V~~~d~~~~~~~~a~~~g~~---~~~-~~~~~~~~~aDlVilavp~~ 68 (279)
T PRK07417 2 KIGIV-GL--G---LIGGSLGLDLRS-LGHTVYGVSRRESTCERAIERGLV---DEA-STDLSLLKDCDLVILALPIG 68 (279)
T ss_pred eEEEE-ee--c---HHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHCCCc---ccc-cCCHhHhcCCCEEEEcCCHH
Confidence 67765 32 2 244444455544 577888888643222221111000 000 00123578999999999954
No 268
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=41.07 E-value=1.6e+02 Score=22.91 Aligned_cols=30 Identities=23% Similarity=0.261 Sum_probs=20.7
Q ss_pred hhhhhhcCeeEEeccccCCccHHHHHHHHHHh
Q 028841 65 PNELAEADGFVFGFPTRFGMMAAQFKAFLDAT 96 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~ 96 (203)
.+....+|.||+..|-. .++..++..-|++
T Consensus 55 ~dA~~~aDVVvLAVP~~--a~~~v~~~l~~~~ 84 (211)
T COG2085 55 EDAAALADVVVLAVPFE--AIPDVLAELRDAL 84 (211)
T ss_pred HHHHhcCCEEEEeccHH--HHHhHHHHHHHHh
Confidence 45677899999999954 4555555555543
No 269
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.53 E-value=2e+02 Score=23.55 Aligned_cols=40 Identities=8% Similarity=0.057 Sum_probs=30.7
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
++..+|.......+..-++...+.+++ -|++++.+++.+.
T Consensus 33 p~Laii~vg~d~as~~Yv~~k~k~~~~-~Gi~~~~~~l~~~ 72 (285)
T PRK14189 33 PGLAVILVGDNPASQVYVRNKVKACED-NGFHSLKDRYPAD 72 (285)
T ss_pred CeEEEEEeCCCchHHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 356666666666677778888888888 7999999999764
No 270
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=40.31 E-value=43 Score=28.10 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=27.1
Q ss_pred EEEEEcCCc-chHHHHHHHHHHhcccC--CCceEEEEEcCCC
Q 028841 5 VYIVYYSMY-GHVEKLAEEIKKGASSV--EGVEAKLWQVPET 43 (203)
Q Consensus 5 ilii~~S~~-g~T~~la~~i~~~~~~~--~g~~v~~~~l~~~ 43 (203)
|||++.|.. |+ .+.|++|++.+.+. .+.+|+++|+-+.
T Consensus 1 ilils~~~G~GH-~~aa~al~~~~~~~~~~~~~v~~~d~~~~ 41 (382)
T PLN02605 1 VLILMSDTGGGH-RASAEAIKDAFQLEFGDEYQVFIVDLWKE 41 (382)
T ss_pred CEEEEEcCCcCh-HHHHHHHHHHHHhhcCCCeeEEEEehhhh
Confidence 588999864 55 56788999888642 2457788888653
No 271
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=40.02 E-value=81 Score=20.87 Aligned_cols=35 Identities=14% Similarity=0.119 Sum_probs=24.0
Q ss_pred EEEcCCcch--HHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 7 IVYYSMYGH--VEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 7 ii~~S~~g~--T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
+.+.|.+|+ +.+=.+.+..-|.. .+++++.+|+..
T Consensus 4 vY~ts~~g~~~~k~~~~~v~~lL~~-k~I~f~eiDI~~ 40 (92)
T cd03030 4 VYIASSSGSTEIKKRQQEVLGFLEA-KKIEFEEVDISM 40 (92)
T ss_pred EEEecccccHHHHHHHHHHHHHHHH-CCCceEEEecCC
Confidence 334566775 44455567777777 788999999875
No 272
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=40.01 E-value=85 Score=23.22 Aligned_cols=42 Identities=10% Similarity=-0.018 Sum_probs=29.6
Q ss_pred CCCCCceEEEEecCC-CCCChHHHHHHHHHHHHHcCcEEecCC
Q 028841 104 QLAGKPAGMFYSTGS-QGGGQETTALTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 104 ~l~gK~~~~~~t~g~-~~~~~~~~~~~l~~~l~~~g~~~v~~~ 145 (203)
.++||++.++.|+.- ....+...++.|.+.+...|+.++|.+
T Consensus 22 ~~~GkVlLIVNtASkCGfTpQYegLe~Ly~ky~~~Gf~VLgFP 64 (162)
T COG0386 22 DYKGKVLLIVNTASKCGFTPQYEGLEALYKKYKDKGFEVLGFP 64 (162)
T ss_pred HhCCcEEEEEEcccccCCcHhHHHHHHHHHHHhhCCcEEEecc
Confidence 478999888877532 112233457778888888999998865
No 273
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=39.95 E-value=96 Score=23.53 Aligned_cols=56 Identities=27% Similarity=0.319 Sum_probs=31.2
Q ss_pred HHHHHHhcccCCCceEEEEEcCCCCcH---HHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCCccHHHHHHHHHHh
Q 028841 20 AEEIKKGASSVEGVEAKLWQVPETLPE---EVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDAT 96 (203)
Q Consensus 20 a~~i~~~~~~~~g~~v~~~~l~~~~~~---~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~ 96 (203)
...+.+.+++ .|+++..+.+.+..+. .... ....+..+|.|||.||. .++.|++.+
T Consensus 10 ~~~l~~~L~~-~G~~~~~~p~~~~~~~~~~~~~~-------------~~~~~~~~~~iiftS~~-------av~~~~~~~ 68 (239)
T cd06578 10 ADELAALLEA-LGAEVLELPLIEIEPLDDAELDA-------------ALADLDEYDWLIFTSPN-------AVEAFFEAL 68 (239)
T ss_pred hHHHHHHHHH-cCCcEEEeeeEEEecCChHHHHH-------------HHHhcCCCCEEEEECHH-------HHHHHHHHH
Confidence 3444555555 5777776665544210 0000 12345589999999983 455555554
No 274
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=39.73 E-value=1e+02 Score=20.05 Aligned_cols=64 Identities=19% Similarity=0.198 Sum_probs=41.1
Q ss_pred CCcchHHHHHHHHHHhcccC--CCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCCccHHH
Q 028841 11 SMYGHVEKLAEEIKKGASSV--EGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQ 88 (203)
Q Consensus 11 S~~g~T~~la~~i~~~~~~~--~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~~~~~~ 88 (203)
+.+.+++.+.+.+...++.. ..++.+++|+.+- ..+.+.+. |++||+----.|.+
T Consensus 6 g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~----------------------P~lAe~~~-ivAtPtLik~~P~P 62 (82)
T PF07689_consen 6 GRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQ----------------------PELAEEDR-IVATPTLIKESPEP 62 (82)
T ss_dssp SBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTS----------------------HSHHTTTE-EECHHHHHTTSSHH
T ss_pred CCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccC----------------------HhHHhHCC-eeecceEeeccCCC
Confidence 34445555555444433331 3568899998763 13444443 67999999889999
Q ss_pred HHHHHHHhc
Q 028841 89 FKAFLDATG 97 (203)
Q Consensus 89 ~k~~ld~~~ 97 (203)
.+.++-.++
T Consensus 63 ~rrliGdls 71 (82)
T PF07689_consen 63 RRRLIGDLS 71 (82)
T ss_dssp HHHHHHHHH
T ss_pred ceEEeccCc
Confidence 999887664
No 275
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=39.63 E-value=1.3e+02 Score=21.05 Aligned_cols=63 Identities=14% Similarity=0.246 Sum_probs=30.9
Q ss_pred hhhcCeeEE-eccccC-----CccH-----HHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHH
Q 028841 68 LAEADGFVF-GFPTRF-----GMMA-----AQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVH 136 (203)
Q Consensus 68 l~~aD~iii-gsP~y~-----~~~~-----~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~ 136 (203)
...||+|++ |.|.-. |+.- ..+|..|+.+. +...++.+.-.+...+......+.++.+.+..
T Consensus 50 ~~GADGV~V~gC~~g~Ch~~~Gn~~a~~Rv~~~k~~L~~~G-------i~~eRv~~~~~~~~~~~~fa~~~~~f~~~i~~ 122 (124)
T PF02662_consen 50 EKGADGVLVAGCHPGDCHYREGNYRAEKRVERLKKLLEELG-------IEPERVRLYWISAPEGKRFAEIVNEFTERIKE 122 (124)
T ss_pred HcCCCEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcC-------CChhHeEEEEeCcccHHHHHHHHHHHHHHHHH
Confidence 357999977 666433 2211 23444555543 45455555544433333333334445554444
Q ss_pred c
Q 028841 137 H 137 (203)
Q Consensus 137 ~ 137 (203)
.
T Consensus 123 l 123 (124)
T PF02662_consen 123 L 123 (124)
T ss_pred c
Confidence 3
No 276
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=39.43 E-value=3.3e+02 Score=25.58 Aligned_cols=54 Identities=13% Similarity=0.105 Sum_probs=32.1
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEe
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFG 77 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiig 77 (203)
+||+|- .-.+.|..|++.+.+.... +.++.+++..... .+ ..+.+..+|+|||+
T Consensus 7 ~iL~ID-~~DSft~nl~~~l~~~~g~--~~~v~vv~~d~~~-~~----------------~~~~l~~~D~VVIs 60 (742)
T TIGR01823 7 HVLFID-SYDSFTYNVVRLLEQQTDI--SVHVTTVHSDTFQ-DQ----------------LLELLPLFDAIVVG 60 (742)
T ss_pred eEEEEe-CCcchHHHHHHHHHHhcCC--CcEEEEEeCCCCc-hh----------------hhhhhcCCCEEEEC
Confidence 677663 2345678888888776532 3466776654321 00 02346688999994
No 277
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=39.34 E-value=1.5e+02 Score=25.37 Aligned_cols=29 Identities=10% Similarity=0.217 Sum_probs=17.1
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEc
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQV 40 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l 40 (203)
+|++|-.| .+..+++.+.+ .|.++.++..
T Consensus 194 ~I~viD~g---~k~ni~~~L~~-----~G~~v~vvp~ 222 (382)
T CHL00197 194 KIIVIDFG---VKYNILRRLKS-----FGCSITVVPA 222 (382)
T ss_pred EEEEEECC---cHHHHHHHHHH-----CCCeEEEEcC
Confidence 67777664 33445555543 4667777743
No 278
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=39.29 E-value=50 Score=24.17 Aligned_cols=41 Identities=12% Similarity=0.112 Sum_probs=26.2
Q ss_pred hhcCeeEEec-cccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 69 AEADGFVFGF-PTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 69 ~~aD~iiigs-P~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
.++|.|++.. +.+.....+.++.||.+.. -++++++.++++
T Consensus 59 ~~~D~l~I~Gg~~~~~~~~~~l~~~l~~~~-------~~~~~i~aic~G 100 (170)
T cd03140 59 EDYDLLILPGGDSWDNPEAPDLAGLVRQAL-------KQGKPVAAICGA 100 (170)
T ss_pred hHccEEEEcCCcccccCCcHHHHHHHHHHH-------HcCCEEEEEChH
Confidence 6789876654 3333334466788888763 367777777654
No 279
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=39.28 E-value=64 Score=25.97 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=29.5
Q ss_pred eEEEEEcCC-cchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 4 KVYIVYYSM-YGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilii~~S~-~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
|||++..+. .|-.+..+..+.+.+.+ .|.+++++....
T Consensus 1 ~il~~~~~~~~gG~~~~~~~l~~~L~~-~g~~v~v~~~~~ 39 (360)
T cd04951 1 KILYVITGLGLGGAEKQVVDLADQFVA-KGHQVAIISLTG 39 (360)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHhccc-CCceEEEEEEeC
Confidence 577777653 46678888889999988 799999887654
No 280
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=39.06 E-value=85 Score=23.36 Aligned_cols=77 Identities=19% Similarity=0.208 Sum_probs=43.2
Q ss_pred eEEEEEc-C-CcchHHHHHHHHHHhcccCCCceEEEEEcCCCC-cHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 4 KVYIVYY-S-MYGHVEKLAEEIKKGASSVEGVEAKLWQVPETL-PEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 4 kilii~~-S-~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~-~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
|+++|.. + .++...+.+..+... .. .|.++.++...+.. -+..++ ...+.+..||.| |+|=.
T Consensus 2 r~V~vtld~~~~~al~~aa~~l~~~-~~-p~l~l~~~~~~el~~~~~~~~------------~~~~aia~ADii-~~sml 66 (164)
T PF11965_consen 2 RFVIVTLDEHYNSALYRAAARLNRD-HC-PGLELSVFAAAELERDPEALE------------ECEAAIARADII-FGSML 66 (164)
T ss_pred EEEEEeCchhhhHHHHHHHHHHhhc-cC-CCeEEEEEeHHHhhcChHHHH------------HHHHHHHhCCEE-Eeehh
Confidence 6776664 2 345555555555554 12 68899998887652 111110 014688999965 55666
Q ss_pred cCCccHHHHHHHHHH
Q 028841 81 RFGMMAAQFKAFLDA 95 (203)
Q Consensus 81 y~~~~~~~~k~~ld~ 95 (203)
+....-..+...++.
T Consensus 67 F~ed~v~~l~~~L~~ 81 (164)
T PF11965_consen 67 FIEDHVRPLLPALEA 81 (164)
T ss_pred hhHHHHHHHHHHHHH
Confidence 655544445554443
No 281
>PRK06761 hypothetical protein; Provisional
Probab=38.84 E-value=82 Score=25.64 Aligned_cols=37 Identities=27% Similarity=0.359 Sum_probs=27.2
Q ss_pred CCceEEEEEcC-CcchHHHHHHHHHHhcccCCCceEEEEE
Q 028841 1 MATKVYIVYYS-MYGHVEKLAEEIKKGASSVEGVEAKLWQ 39 (203)
Q Consensus 1 Mm~kilii~~S-~~g~T~~la~~i~~~~~~~~g~~v~~~~ 39 (203)
||+++.+|.|- ..|.| .+++.+++.+.. .|.+++.+.
T Consensus 1 mm~~lIvI~G~~GsGKT-Tla~~L~~~L~~-~g~~v~~~~ 38 (282)
T PRK06761 1 MMTKLIIIEGLPGFGKS-TTAKMLNDILSQ-NGIEVELYL 38 (282)
T ss_pred CCCcEEEEECCCCCCHH-HHHHHHHHhcCc-CceEEEEEe
Confidence 77777777774 46766 578889898887 677777643
No 282
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=38.80 E-value=1.5e+02 Score=22.59 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=15.8
Q ss_pred hhhhhhcCeeEEeccccCCccHHHHHH
Q 028841 65 PNELAEADGFVFGFPTRFGMMAAQFKA 91 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~~k~ 91 (203)
.+.+.++|+|+|+- |+.+-.++.
T Consensus 75 ~~~l~~ad~I~~~G----G~~~~~~~~ 97 (210)
T cd03129 75 VARLLEADGIFVGG----GNQLRLLSV 97 (210)
T ss_pred HHHHhhCCEEEEcC----CcHHHHHHH
Confidence 46899999999974 444444444
No 283
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=38.70 E-value=84 Score=22.65 Aligned_cols=39 Identities=26% Similarity=0.170 Sum_probs=27.9
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQV 40 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l 40 (203)
|.+|..||.+|.+-.--.-|-.++.++.. .|.||.++--
T Consensus 1 ~~~k~~IIl~SG~~dk~~~a~iias~A~A-~G~EV~VF~T 39 (137)
T COG2210 1 MDKKLGIILASGTLDKAYAALIIASGAAA-MGYEVTVFFT 39 (137)
T ss_pred CCceEEEEEeCCCHHHHHHHHHHHHHHHH-cCCeEEEEEe
Confidence 34688999999765544455566777766 7999988764
No 284
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.26 E-value=82 Score=25.74 Aligned_cols=53 Identities=11% Similarity=0.065 Sum_probs=31.2
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
++++||-.|. .+.+-++..+.. .|..|.+.+-+..+ ..+.+.+||.||.+++.
T Consensus 159 k~vvVIGrs~-----~VG~pla~lL~~-~gatVtv~~s~t~~-------------------l~~~~~~ADIVIsAvg~ 211 (286)
T PRK14175 159 KNAVVIGRSH-----IVGQPVSKLLLQ-KNASVTILHSRSKD-------------------MASYLKDADVIVSAVGK 211 (286)
T ss_pred CEEEEECCCc-----hhHHHHHHHHHH-CCCeEEEEeCCchh-------------------HHHHHhhCCEEEECCCC
Confidence 3566665554 233333333333 46677777643211 14578999999999887
No 285
>COG3412 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.22 E-value=53 Score=23.27 Aligned_cols=37 Identities=24% Similarity=0.235 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
||-.++|+.+|+ .+|+-+.+-+++..+ +|.+....-.
T Consensus 1 ~~vgiVIVSHS~-----~lAeGv~~li~em~~-dv~i~~~gGt 37 (129)
T COG3412 1 MMVGIVIVSHSK-----ELAEGVAELIREMAG-DVPITYAGGT 37 (129)
T ss_pred CcceEEEEeCCH-----HHHHHHHHHHHHHhC-CCceEEecCC
Confidence 677888888884 456655555555334 6666665443
No 286
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=38.16 E-value=1.2e+02 Score=20.60 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=25.4
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEE
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQ 39 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~ 39 (203)
++-++|..|..|+|+.+.+.+. .+++ .|..+-.+.
T Consensus 53 ~~d~vi~is~sg~~~~~~~~~~-~ak~-~g~~vi~iT 87 (131)
T PF01380_consen 53 PDDLVIIISYSGETRELIELLR-FAKE-RGAPVILIT 87 (131)
T ss_dssp TTEEEEEEESSSTTHHHHHHHH-HHHH-TTSEEEEEE
T ss_pred ccceeEeeeccccchhhhhhhH-HHHh-cCCeEEEEe
Confidence 3567777888999999988887 5666 576665444
No 287
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.66 E-value=2.3e+02 Score=23.17 Aligned_cols=110 Identities=13% Similarity=0.204 Sum_probs=62.3
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHH-H---hccCC-CC---------C-CCCCCC--C--
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEE-V---LGKMS-AP---------P-KSDVPI--I-- 63 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~-~---~~~~~-~~---------~-~~d~~~--~-- 63 (203)
++..+|.-....-+..-++...+.+++ .|++++.+++.+...++ + +.... .+ | ..++.+ .
T Consensus 32 P~La~I~vg~d~as~~Yv~~k~k~~~~-~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PlP~~i~~~~i~~ 110 (282)
T PRK14180 32 PKLVAIIVGNDPASKTYVASKEKACAQ-VGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIY 110 (282)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHh
Confidence 356666666666667778888888888 79999999998754322 2 11110 00 1 011100 0
Q ss_pred ChhhhhhcCeeE--------Ee-ccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCC
Q 028841 64 TPNELAEADGFV--------FG-FPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGS 118 (203)
Q Consensus 64 ~~~~l~~aD~ii--------ig-sP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~ 118 (203)
.....++-|++= .+ -+.+.-.-|..+-.+|++.. -.+.||.+.+++-+.-
T Consensus 111 ~I~p~KDVDGl~~~n~g~l~~g~~~~~~PcTp~aii~lL~~y~-----i~l~Gk~vvViGrS~~ 169 (282)
T PRK14180 111 SIKPEKDVDGFHPTNVGRLQLRDKKCLESCTPKGIMTMLREYG-----IKTEGAYAVVVGASNV 169 (282)
T ss_pred hcCccccccccChhhHHHHhcCCCCCcCCCCHHHHHHHHHHhC-----CCCCCCEEEEECCCCc
Confidence 122345666652 23 24444445556666666643 2588999998876643
No 288
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=37.53 E-value=2.8e+02 Score=24.14 Aligned_cols=63 Identities=16% Similarity=0.171 Sum_probs=38.3
Q ss_pred hcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCCh--HHHHHHHHHHHHHcCcEEecCC
Q 028841 70 EADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQ--ETTALTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 70 ~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~--~~~~~~l~~~l~~~g~~~v~~~ 145 (203)
.-|..|+..| +......++.+. -.|-+.+++.++|....+. ...-.++.+.....|+.++|..
T Consensus 64 ~~Dlavi~vp------~~~~~~~l~e~~-------~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlGPn 128 (447)
T TIGR02717 64 PVDLAVIVVP------AKYVPQVVEECG-------EKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLGPN 128 (447)
T ss_pred CCCEEEEecC------HHHHHHHHHHHH-------hcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEecC
Confidence 4699999998 455566666653 2455556565655432221 1112456666777899999875
No 289
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=37.43 E-value=1.5e+02 Score=21.06 Aligned_cols=47 Identities=6% Similarity=0.055 Sum_probs=30.7
Q ss_pred hhhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 65 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+..+|++|+....-...-...++.|++.+.. ...++++.++++-
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~-----~~~~~p~ivv~nK 113 (161)
T cd04124 67 ASYYHKAHACILVFDVTRKITYKNLSKWYEELRE-----YRPEIPCIVVANK 113 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHH-----hCCCCcEEEEEEC
Confidence 3457899999998776554433456677776642 2346788777764
No 290
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=37.39 E-value=43 Score=26.85 Aligned_cols=52 Identities=19% Similarity=0.348 Sum_probs=28.7
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEe
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFG 77 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiig 77 (203)
.||+|+.+--+..-+.++.++.. .|.+++.+.+.+... ....+.++|+|||.
T Consensus 2 pkV~Vl~~pGtNce~e~~~A~~~-----aG~~~~~v~~~dl~~------------------~~~~l~~~~~lvip 53 (259)
T PF13507_consen 2 PKVAVLRFPGTNCERETAAAFEN-----AGFEPEIVHINDLLS------------------GESDLDDFDGLVIP 53 (259)
T ss_dssp -EEEEEE-TTEEEHHHHHHHHHC-----TT-EEEEEECCHHHT------------------TS--GCC-SEEEE-
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-----cCCCceEEEEEeccc------------------ccCchhhCcEEEEC
Confidence 47888877654444556666543 577888887765310 02367888888775
No 291
>PRK00758 GMP synthase subunit A; Validated
Probab=37.38 E-value=1.6e+02 Score=21.77 Aligned_cols=30 Identities=17% Similarity=0.108 Sum_probs=18.1
Q ss_pred EEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEc
Q 028841 5 VYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQV 40 (203)
Q Consensus 5 ilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l 40 (203)
|+||-. ..+++..+++.+.+ .|.++.+++.
T Consensus 2 i~iid~-~~~~~~~i~~~l~~-----~g~~~~~~~~ 31 (184)
T PRK00758 2 IVVVDN-GGQYNHLIHRTLRY-----LGVDAKIIPN 31 (184)
T ss_pred EEEEEC-CCchHHHHHHHHHH-----cCCcEEEEEC
Confidence 666542 24567777776644 3567777764
No 292
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=36.74 E-value=2.2e+02 Score=23.63 Aligned_cols=55 Identities=11% Similarity=0.057 Sum_probs=30.6
Q ss_pred HHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCC
Q 028841 19 LAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFG 83 (203)
Q Consensus 19 la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~ 83 (203)
+...+++.+.. .|.+|..+|........... ......+.+.++|.|++..|.-..
T Consensus 157 IG~~vA~~L~~-~G~~V~~~d~~~~~~~~~~~---------~~~~l~ell~~aDiVil~lP~t~~ 211 (330)
T PRK12480 157 IGAATAKIYAG-FGATITAYDAYPNKDLDFLT---------YKDSVKEAIKDADIISLHVPANKE 211 (330)
T ss_pred HHHHHHHHHHh-CCCEEEEEeCChhHhhhhhh---------ccCCHHHHHhcCCEEEEeCCCcHH
Confidence 34444444444 57888888864321110000 000124567899999999997653
No 293
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=36.69 E-value=2.1e+02 Score=22.61 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=19.4
Q ss_pred hhhhhhcCeeEEeccccCCccHHHHHHHHHHhc
Q 028841 65 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~ 97 (203)
.+.+.++|.||+++|+- .+..++..+.
T Consensus 40 ~~~~~~~DlvvlavP~~------~~~~~l~~~~ 66 (258)
T PF02153_consen 40 IEAVEDADLVVLAVPVS------AIEDVLEEIA 66 (258)
T ss_dssp HHHGGCCSEEEE-S-HH------HHHHHHHHHH
T ss_pred HhHhcCCCEEEEcCCHH------HHHHHHHHhh
Confidence 35789999999999974 5677777775
No 294
>PRK15083 PTS system mannitol-specific transporter subunit IICBA; Provisional
Probab=36.60 E-value=62 Score=29.59 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=26.2
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCce-EEEEEc
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVE-AKLWQV 40 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~-v~~~~l 40 (203)
+|++++++|..|.+.-+...+.+.+++ .+.+ +++.+.
T Consensus 379 kkilvVC~sG~GsS~m~~~~l~~~l~~-~~i~~i~i~~~ 416 (639)
T PRK15083 379 RKIIVACDAGMGSSAMGAGVLRKKVQD-AGLSQISVTNS 416 (639)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHH-cCCCeeEEEEe
Confidence 478888889889887677777777776 3443 555543
No 295
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=36.52 E-value=3e+02 Score=24.21 Aligned_cols=146 Identities=13% Similarity=0.110 Sum_probs=71.2
Q ss_pred HHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCC----CCCCCCCCCCChhhhhhcCeeEEeccccCCccHHHHHHHHH
Q 028841 19 LAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMS----APPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLD 94 (203)
Q Consensus 19 la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~----~~~~~d~~~~~~~~l~~aD~iiigsP~y~~~~~~~~k~~ld 94 (203)
|...++..+.+ .|+++.++|......+...+... ....++. ....+.+..+|.||+..|.. ..+...++
T Consensus 10 MG~~mA~nL~~-~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~-~e~v~~l~~~dvIil~v~~~-----~~v~~Vi~ 82 (467)
T TIGR00873 10 MGSNLALNMAD-HGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSI-EEFVQSLERPRKIMLMVKAG-----APVDAVIN 82 (467)
T ss_pred HHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHhhccCCCCceecCCH-HHHHhhcCCCCEEEEECCCc-----HHHHHHHH
Confidence 55555555555 68888888865433222222100 0011111 00122344689888887652 44556666
Q ss_pred HhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccCCCCCccceecCCCC
Q 028841 95 ATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGS 174 (203)
Q Consensus 95 ~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 174 (203)
.+... ..+|+. +.-++.. ....+ ....+.+...|..+++.+++-|... .. .|....
T Consensus 83 ~l~~~----L~~g~i---IID~gns--~~~~t-~~~~~~l~~~gi~fvdapVsGG~~g----A~-----~G~~im----- 138 (467)
T TIGR00873 83 QLLPL----LEKGDI---IIDGGNS--HYPDT-ERRYKELKAKGILFVGSGVSGGEEG----AR-----KGPSIM----- 138 (467)
T ss_pred HHHhh----CCCCCE---EEECCCc--CHHHH-HHHHHHHHhcCCEEEcCCCCCCHHH----Hh-----cCCcCC-----
Confidence 55321 123443 2332221 11222 2344567788999999886643210 00 111000
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 028841 175 RQPTELELEQAFHQGKHIAGI 195 (203)
Q Consensus 175 ~~~~~~~~~~~~~~g~~l~~~ 195 (203)
.--+++..++++.+.+.++..
T Consensus 139 ~GG~~~a~~~~~p~L~~ia~~ 159 (467)
T TIGR00873 139 PGGSAEAWPLVAPIFQKIAAK 159 (467)
T ss_pred CCCCHHHHHHHHHHHHHHhhh
Confidence 011567788888777777654
No 296
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=36.39 E-value=1.5e+02 Score=23.57 Aligned_cols=14 Identities=29% Similarity=0.266 Sum_probs=11.5
Q ss_pred hhhhhhcCeeEEec
Q 028841 65 PNELAEADGFVFGF 78 (203)
Q Consensus 65 ~~~l~~aD~iiigs 78 (203)
.+.+.+||+|+|+-
T Consensus 77 ~~~l~~ad~I~~~G 90 (250)
T TIGR02069 77 IALLSNATGIFFTG 90 (250)
T ss_pred HHHHhhCCEEEEeC
Confidence 46799999999873
No 297
>PRK07206 hypothetical protein; Provisional
Probab=36.35 E-value=43 Score=28.43 Aligned_cols=34 Identities=29% Similarity=0.234 Sum_probs=20.8
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
||++++||-++..| ..+++++ ++ .|.++..++-.
T Consensus 1 ~~k~~liv~~~~~~--~~~~~a~----~~-~G~~~v~v~~~ 34 (416)
T PRK07206 1 MMKKVVIVDPFSSG--KFLAPAF----KK-RGIEPIAVTSS 34 (416)
T ss_pred CCCeEEEEcCCchH--HHHHHHH----HH-cCCeEEEEEcC
Confidence 88888888775443 3344444 44 47777666644
No 298
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=36.27 E-value=1.6e+02 Score=21.05 Aligned_cols=47 Identities=6% Similarity=0.023 Sum_probs=29.9
Q ss_pred hhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 66 NELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..+..+|++|+....-...--..++.|+..+... ..++.++.++++-
T Consensus 72 ~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~pvivv~nK 118 (168)
T cd01866 72 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQH----SNSNMTIMLIGNK 118 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh----CCCCCcEEEEEEC
Confidence 3567889999987766544344566677665421 2356777777764
No 299
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=36.26 E-value=70 Score=26.33 Aligned_cols=51 Identities=14% Similarity=0.163 Sum_probs=33.1
Q ss_pred HHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecC
Q 028841 90 KAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPI 144 (203)
Q Consensus 90 k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~ 144 (203)
+.|++.+....-.+.|.||+++++.+.+..... ...+.+.|...|..+.+.
T Consensus 66 d~f~~~~~~~lv~g~L~g~~V~vV~~p~a~~~~----~~~v~~~L~~AGA~v~g~ 116 (308)
T PF11382_consen 66 DQFIAAVAPRLVAGRLTGRSVAVVTLPGADDED----VDAVRELLEQAGATVTGR 116 (308)
T ss_pred HHHHHHHHHHHhcCccCCCEEEEEEcCCCChHH----HHHHHHHHHHCCCeEEEE
Confidence 344444332223457999999999875543222 455788888999998865
No 300
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=36.18 E-value=1e+02 Score=25.59 Aligned_cols=39 Identities=21% Similarity=0.127 Sum_probs=29.5
Q ss_pred ceEEEEEcCCc---chHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 3 TKVYIVYYSMY---GHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 3 ~kilii~~S~~---g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
+||.|++|..+ --+-+=++.+.+.+.+ .+.++..+++..
T Consensus 4 ~~i~vl~GG~S~E~evSl~s~~~v~~~l~~-~~~~v~~i~i~~ 45 (343)
T PRK14568 4 IKVGILFGGCSEEHPVSVKSAIEVARNLDT-EKYEPFYIGITK 45 (343)
T ss_pred cEEEEEECCCCCchHHHHHhHHHHHHhhcc-cCCeEEEEEECC
Confidence 58999998653 3355557788888877 688999998865
No 301
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=36.08 E-value=2.3e+02 Score=22.75 Aligned_cols=40 Identities=8% Similarity=0.100 Sum_probs=30.5
Q ss_pred eEEEEEcC-CcchHHHHHHHHHHhcccCCCceEEEEEcCCCC
Q 028841 4 KVYIVYYS-MYGHVEKLAEEIKKGASSVEGVEAKLWQVPETL 44 (203)
Q Consensus 4 kilii~~S-~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~ 44 (203)
||+++..+ ..|-.+..+..+.+.+.+ .|.+++++......
T Consensus 1 kIl~~~~~~~~GG~~~~~~~l~~~L~~-~~~~v~~i~~~~~~ 41 (358)
T cd03812 1 KILHIVGTMNRGGIETFIMNYYRNLDR-SKIQFDFLVTSKEE 41 (358)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHhcCc-cceEEEEEEeCCCC
Confidence 57787766 356677888888899987 68999988876543
No 302
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.06 E-value=2.4e+02 Score=23.06 Aligned_cols=39 Identities=10% Similarity=0.030 Sum_probs=29.8
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
+..+|......-+..-++...+.+++ -|++++.+++.+.
T Consensus 40 ~Laii~vg~d~aS~~Yv~~k~k~~~~-~Gi~~~~~~l~~~ 78 (287)
T PRK14176 40 GLATILVGDDPASKMYVRLKHKACER-VGIRAEDQFLPAD 78 (287)
T ss_pred eEEEEEECCCcchHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 45666666565667778888888888 7999999999765
No 303
>PRK06835 DNA replication protein DnaC; Validated
Probab=36.04 E-value=67 Score=26.76 Aligned_cols=69 Identities=14% Similarity=0.097 Sum_probs=39.5
Q ss_pred eEEEEEcC-CcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEe
Q 028841 4 KVYIVYYS-MYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFG 77 (203)
Q Consensus 4 kilii~~S-~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiig 77 (203)
+-+++||. .+|.|. ++.+|+..+.. .|..|.+++..++. ..+... ......+... ..+.+.++|+|||=
T Consensus 184 ~~Lll~G~~GtGKTh-La~aIa~~l~~-~g~~V~y~t~~~l~-~~l~~~-~~~~~~~~~~-~~~~l~~~DLLIID 253 (329)
T PRK06835 184 ENLLFYGNTGTGKTF-LSNCIAKELLD-RGKSVIYRTADELI-EILREI-RFNNDKELEE-VYDLLINCDLLIID 253 (329)
T ss_pred CcEEEECCCCCcHHH-HHHHHHHHHHH-CCCeEEEEEHHHHH-HHHHHH-HhccchhHHH-HHHHhccCCEEEEe
Confidence 45777886 479987 77777777766 58888888775531 111000 0000001000 13577899999874
No 304
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=35.95 E-value=1e+02 Score=21.74 Aligned_cols=41 Identities=27% Similarity=0.269 Sum_probs=29.7
Q ss_pred CCceEEEEEcCCcchHHHHHHHH--HHhcccCCCceEEEEEcCC
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEI--KKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i--~~~~~~~~g~~v~~~~l~~ 42 (203)
|+.+++|+..|..+|.+++...+ +..+.. -|.+|+++-.-+
T Consensus 1 ~~~~v~i~~t~G~~~~~r~ya~f~~A~~a~s-mg~dV~iF~t~d 43 (120)
T COG2044 1 MADKVLIVVTSGPNNPERAYAPFVMATAAAS-MGYDVTIFFTMD 43 (120)
T ss_pred CCceEEEEEecCCCCHHHHHhHHHHHHHHHh-CCCceEEEEEec
Confidence 45689999999888888877644 444444 688998876544
No 305
>TIGR00130 frhD coenzyme F420-reducing hydrogenase delta subunit (putative coenzyme F420 hydrogenase processing subunit). FrhD is not part of the active FRH heterotrimer, but is probably a protease required for maturation. Alternative name: 8-hydroxy-5-deazaflavin (F420) reducing hydrogenase (FRH) subunit delta.
Probab=35.89 E-value=1.7e+02 Score=21.17 Aligned_cols=75 Identities=12% Similarity=0.099 Sum_probs=45.4
Q ss_pred CceEEEE-EcCC----cchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEE
Q 028841 2 ATKVYIV-YYSM----YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVF 76 (203)
Q Consensus 2 m~kilii-~~S~----~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iii 76 (203)
|+|++|+ +|.. .|---.+++.+++.... ....++++|....-++.... .-.+..+|.+||
T Consensus 2 ~~~ilVlGiGN~l~gDDGvG~~v~~~L~~~~~~-~~~~v~vid~gt~~~~~l~~--------------~~~~~~~d~vIi 66 (153)
T TIGR00130 2 NHEILVVGCGNILFGDDGFGPAVIEYLKENGVE-KPDNVCLIDAGTGAPHFVFT--------------LIPQSKWKKIIV 66 (153)
T ss_pred CceEEEEEeCccccccCcHhHHHHHHHHHhCCC-CCCCeEEEECCCcHHHHHHH--------------HhhhcCCCEEEE
Confidence 5688877 4553 46667788888652111 11247788865532221110 012478999999
Q ss_pred eccccCCccHHHHHH
Q 028841 77 GFPTRFGMMAAQFKA 91 (203)
Q Consensus 77 gsP~y~~~~~~~~k~ 91 (203)
.=.+..+..|+.+..
T Consensus 67 vDA~~~~~~PG~v~~ 81 (153)
T TIGR00130 67 VDIADFGAEPGTLRV 81 (153)
T ss_pred EEccCCCcCCCEEEE
Confidence 988888888876554
No 306
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=35.75 E-value=2.9e+02 Score=23.90 Aligned_cols=86 Identities=24% Similarity=0.229 Sum_probs=48.5
Q ss_pred eEEEEEcCCc---c----hHHHHHHHHHHhcccCCCceEEEEEcCCCC--cHHHhccCCCCCCCCCCCCChhhh--hhcC
Q 028841 4 KVYIVYYSMY---G----HVEKLAEEIKKGASSVEGVEAKLWQVPETL--PEEVLGKMSAPPKSDVPIITPNEL--AEAD 72 (203)
Q Consensus 4 kilii~~S~~---g----~T~~la~~i~~~~~~~~g~~v~~~~l~~~~--~~~~~~~~~~~~~~d~~~~~~~~l--~~aD 72 (203)
|+-++.+|+. - ..+..++.+.+.+++ .+++ +++..... .++.... .+.+ .+.|
T Consensus 2 ~ig~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~--vv~~~~~~~~~~~~~~~-------------~~~~~~~~~d 65 (452)
T cd00578 2 KIGFVTGSQHLYGEELLEQVEEYAREVADLLNE-LPVE--VVDKPEVTGTPDEARKA-------------AEEFNEANCD 65 (452)
T ss_pred EEEEEEecccccChhHHHHHHHHHHHHHHHHhc-CCce--EEecCcccCCHHHHHHH-------------HHHHhhcCCc
Confidence 6777777754 2 355667777777766 4554 44444332 2211110 1122 3689
Q ss_pred eeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecC
Q 028841 73 GFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTG 117 (203)
Q Consensus 73 ~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g 117 (203)
+||+..++|..+ +.++..+. ..++|+.++++..
T Consensus 66 ~ii~~~~tf~~~-----~~~~~~~~-------~~~~Pvll~a~~~ 98 (452)
T cd00578 66 GLIVWMHTFGPA-----KMWIAGLS-------ELRKPVLLLATQF 98 (452)
T ss_pred EEEEcccccccH-----HHHHHHHH-------hcCCCEEEEeCCC
Confidence 999988888755 22233222 1368888888764
No 307
>PRK15456 universal stress protein UspG; Provisional
Probab=35.47 E-value=90 Score=21.77 Aligned_cols=40 Identities=13% Similarity=-0.012 Sum_probs=25.8
Q ss_pred CCceEEEEE-cCCcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 1 MATKVYIVY-YSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 1 Mm~kilii~-~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
|++|||+-+ +|...++.++++...+..+. . .++.++.+-+
T Consensus 1 m~~~ILv~vD~S~~~~s~~al~~A~~la~~-~-~~l~llhv~~ 41 (142)
T PRK15456 1 MYKTIIMPVDVFEMELSDKAVRHAEFLAQD-D-GVIHLLHVLP 41 (142)
T ss_pred CCccEEEeccCCchhHHHHHHHHHHHHHhc-C-CeEEEEEEec
Confidence 788998876 56545667777766655443 3 3677777643
No 308
>PRK08939 primosomal protein DnaI; Reviewed
Probab=35.37 E-value=38 Score=27.85 Aligned_cols=38 Identities=26% Similarity=0.369 Sum_probs=27.5
Q ss_pred eEEEEEcCC-cchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 4 KVYIVYYSM-YGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilii~~S~-~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
+-++++|+. +|.|. ++.+++..+.+ .|..+.++...++
T Consensus 157 ~gl~L~G~~G~GKTh-La~Aia~~l~~-~g~~v~~~~~~~l 195 (306)
T PRK08939 157 KGLYLYGDFGVGKSY-LLAAIANELAK-KGVSSTLLHFPEF 195 (306)
T ss_pred CeEEEECCCCCCHHH-HHHHHHHHHHH-cCCCEEEEEHHHH
Confidence 357788865 78886 56677777766 6888988887643
No 309
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.17 E-value=78 Score=26.07 Aligned_cols=37 Identities=22% Similarity=0.155 Sum_probs=28.2
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEE
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQ 39 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~ 39 (203)
|++|.|++-........+++.+.+.+.+ .|+++.+.+
T Consensus 1 m~~igiv~n~~~~~~~~~~~~l~~~L~~-~g~~v~~~~ 37 (305)
T PRK02649 1 MPKAGIIYNDGKPLAVRTAEELQDKLEA-AGWEVVRAS 37 (305)
T ss_pred CCEEEEEEcCCCHHHHHHHHHHHHHHHH-CCCEEEEec
Confidence 4589998877666677889999888877 688776643
No 310
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=35.07 E-value=1.5e+02 Score=24.08 Aligned_cols=40 Identities=20% Similarity=0.143 Sum_probs=22.3
Q ss_pred CCceEEEEEcC-Ccc-hHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 1 MATKVYIVYYS-MYG-HVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 1 Mm~kilii~~S-~~g-~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
||++.-|.+-| .+| ..+.+++++...+. +.+++.......
T Consensus 1 ~~~~~~i~~VSDstGeTAe~v~~A~l~QF~---~~~~~~~~~p~v 42 (269)
T PRK05339 1 MMMKRHVFLVSDSTGETAETVGRAALSQFP---NVEFEEHRYPFV 42 (269)
T ss_pred CCCceEEEEEeCCHHHHHHHHHHHHHHhCC---CCCeeEEEeCCc
Confidence 55443333334 255 56678888888884 445555444433
No 311
>PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6.3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B ....
Probab=35.00 E-value=1.2e+02 Score=20.88 Aligned_cols=39 Identities=10% Similarity=0.065 Sum_probs=29.3
Q ss_pred eEEEEEcCCc---chHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 4 KVYIVYYSMY---GHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilii~~S~~---g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
||.||++..+ --+-.=|..|.+.+.+ .+.++..+.+...
T Consensus 2 ~v~vlfGG~S~EheVSl~Sa~~v~~~L~~-~~y~v~~i~i~k~ 43 (117)
T PF01820_consen 2 RVAVLFGGRSSEHEVSLRSARNVYEALDK-EKYEVIPIYIDKD 43 (117)
T ss_dssp EEEEEEETSSTTHHHHHHHHHHHHHHSHT-TTEEEEEEEETTT
T ss_pred eEEEEeccCchhHHHHHHHHHHHHHHHhh-hcceEEEEeecCC
Confidence 9999998653 3455667788888877 6888888887654
No 312
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.84 E-value=78 Score=25.63 Aligned_cols=35 Identities=20% Similarity=0.001 Sum_probs=28.4
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEE
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQ 39 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~ 39 (203)
|+.|++......+..+++.+.+.+++ .|+++.+..
T Consensus 2 ~v~iv~~~~k~~~~~~~~~I~~~L~~-~g~~v~v~~ 36 (277)
T PRK03708 2 RFGIVARRDKEEALKLAYRVYDFLKV-SGYEVVVDS 36 (277)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEec
Confidence 88888777677788899999998887 688887753
No 313
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.77 E-value=93 Score=25.42 Aligned_cols=16 Identities=19% Similarity=0.044 Sum_probs=12.8
Q ss_pred hhhhhhcCeeEEeccc
Q 028841 65 PNELAEADGFVFGFPT 80 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~ 80 (203)
.+.+++||.||.+++.
T Consensus 195 ~~~~~~ADIvV~AvG~ 210 (285)
T PRK14191 195 SFYTQNADIVCVGVGK 210 (285)
T ss_pred HHHHHhCCEEEEecCC
Confidence 3578999999999843
No 314
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.65 E-value=2.5e+02 Score=22.87 Aligned_cols=39 Identities=8% Similarity=0.164 Sum_probs=30.4
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
+..+|.......+..-++...+.+++ -|++++++++.+.
T Consensus 32 ~Laii~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~ 70 (282)
T PRK14166 32 CLAVILVGDNPASQTYVKSKAKACEE-CGIKSLVYHLNEN 70 (282)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 45666666666677778888888888 7999999999764
No 315
>PLN02335 anthranilate synthase
Probab=34.49 E-value=2e+02 Score=22.28 Aligned_cols=33 Identities=9% Similarity=0.192 Sum_probs=21.1
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
+||+|- -..+.|..+++.+.+ .|.+++++....
T Consensus 20 ~ilviD-~~dsft~~i~~~L~~-----~g~~~~v~~~~~ 52 (222)
T PLN02335 20 PIIVID-NYDSFTYNLCQYMGE-----LGCHFEVYRNDE 52 (222)
T ss_pred cEEEEE-CCCCHHHHHHHHHHH-----CCCcEEEEECCC
Confidence 566662 224667778888765 366888886543
No 316
>PRK10264 hydrogenase 1 maturation protease; Provisional
Probab=34.42 E-value=1.6e+02 Score=22.51 Aligned_cols=70 Identities=9% Similarity=0.060 Sum_probs=45.9
Q ss_pred ceEEEE-EcCC----cchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEe
Q 028841 3 TKVYIV-YYSM----YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFG 77 (203)
Q Consensus 3 ~kilii-~~S~----~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiig 77 (203)
+|++|+ +|.. .|---.+++.+.+.... ..+++++|.....+ ++ .+.+..+|.+||.
T Consensus 4 ~rilVlGiGN~L~gDDGvG~~va~~L~~~~~~--~~~V~vid~Gt~g~-~l----------------l~~i~~~d~vIiV 64 (195)
T PRK10264 4 QRVVVMGLGNLLWADEGFGVRVAERLYAHYHW--PEYVEIVDGGTQGL-NL----------------LGYVESASHLLIL 64 (195)
T ss_pred CCEEEEEeCccccccCcHHHHHHHHHHhhcCC--CCCeEEEECCCCHH-HH----------------HHHHcCCCEEEEE
Confidence 477777 4553 46677788888765421 22588888765432 11 3467789999998
Q ss_pred ccccCCccHHHHHH
Q 028841 78 FPTRFGMMAAQFKA 91 (203)
Q Consensus 78 sP~y~~~~~~~~k~ 91 (203)
=.+..+..|+.+..
T Consensus 65 DAv~~g~~PGtv~~ 78 (195)
T PRK10264 65 DAIDYGLEPGTLRT 78 (195)
T ss_pred ECCccCCCCCeEEE
Confidence 87877777776543
No 317
>PRK06893 DNA replication initiation factor; Validated
Probab=34.31 E-value=2.1e+02 Score=22.16 Aligned_cols=36 Identities=8% Similarity=0.105 Sum_probs=25.1
Q ss_pred EEEEEcCC-cchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 5 VYIVYYSM-YGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 5 ilii~~S~-~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
.+++||.+ +|.|. ++.+++..+.. .+..+.++++.+
T Consensus 41 ~l~l~G~~G~GKTh-L~~ai~~~~~~-~~~~~~y~~~~~ 77 (229)
T PRK06893 41 FFYIWGGKSSGKSH-LLKAVSNHYLL-NQRTAIYIPLSK 77 (229)
T ss_pred eEEEECCCCCCHHH-HHHHHHHHHHH-cCCCeEEeeHHH
Confidence 46778864 78885 77777777655 466777777753
No 318
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=34.08 E-value=1.1e+02 Score=21.27 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=22.6
Q ss_pred EEEEcCCcc-hHHHHHHHHHHhcccCCCceEEEEEcCCCCc
Q 028841 6 YIVYYSMYG-HVEKLAEEIKKGASSVEGVEAKLWQVPETLP 45 (203)
Q Consensus 6 lii~~S~~g-~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~ 45 (203)
..||++++- .+++..+.+.+ .|++.+++|+.+..+
T Consensus 3 itiy~~p~C~t~rka~~~L~~-----~gi~~~~~~y~~~~~ 38 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEE-----HGIEYTFIDYLKTPP 38 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHH-----cCCCcEEEEeecCCC
Confidence 456888764 44444444433 688999999887654
No 319
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=34.06 E-value=2.3e+02 Score=22.12 Aligned_cols=37 Identities=22% Similarity=0.152 Sum_probs=27.8
Q ss_pred eEEEEEcC----CcchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 4 KVYIVYYS----MYGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 4 kilii~~S----~~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
||.+|..+ .+.....+.+.+.+.+++ .|.++.+.+..
T Consensus 1 ~I~~i~~~~~~~~~~f~~~~~~gi~~~~~~-~gy~~~i~~~~ 41 (265)
T cd06354 1 KVALVTDVGGLGDKSFNQSAWEGLERAAKE-LGIEYKYVESK 41 (265)
T ss_pred CEEEEeCCCCcCchhHHHHHHHHHHHHHHH-cCCeEEEEecC
Confidence 56666643 356778899999999998 78888887554
No 320
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=33.91 E-value=2.8e+02 Score=23.16 Aligned_cols=56 Identities=9% Similarity=-0.060 Sum_probs=29.5
Q ss_pred HHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 19 LAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 19 la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
+...++..+.. .|+++.+.+.................. + ..+.+.++|.|++..|.
T Consensus 28 mG~AlA~~L~~-sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s----~~eaa~~ADVVvLaVPd 83 (330)
T PRK05479 28 QGHAHALNLRD-SGVDVVVGLREGSKSWKKAEADGFEVL-T----VAEAAKWADVIMILLPD 83 (330)
T ss_pred HHHHHHHHHHH-CCCEEEEEECCchhhHHHHHHCCCeeC-C----HHHHHhcCCEEEEcCCH
Confidence 55556666666 687776655432211111111010000 1 14567899999999993
No 321
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=33.79 E-value=1.1e+02 Score=20.57 Aligned_cols=38 Identities=8% Similarity=0.009 Sum_probs=20.9
Q ss_pred eEEEEEcCCcchHHH--HHHHHHHhcccCCCceEEEEEcCC
Q 028841 4 KVYIVYYSMYGHVEK--LAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilii~~S~~g~T~~--la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
.|-|.+.|.+||++. =-+.+...|.. .+++.+.+|+..
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a-~kI~fe~vDIa~ 41 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEA-KKIPFEEVDIAM 41 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHH-TT--EEEEETTT
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHH-cCCCcEEEeCcC
Confidence 355555667776432 22345555555 688999999986
No 322
>PRK09273 hypothetical protein; Provisional
Probab=33.73 E-value=55 Score=25.41 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=28.4
Q ss_pred eEEEEEc-CCcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 4 KVYIVYY-SMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilii~~-S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
||.+|.. |+...+..+.+.+.+.+++ .|++ ++|+..
T Consensus 2 kiali~e~sqa~kn~~i~~~L~~~L~~-~G~e--V~D~G~ 38 (211)
T PRK09273 2 KIALINENSQAAKNAIIYEALKKVADP-KGHE--VFNYGM 38 (211)
T ss_pred eEEeecccchhhhhHHHHHHHHHHHHH-CCCE--EEEeCC
Confidence 8988875 6677888999999999988 6765 467654
No 323
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=33.72 E-value=2.5e+02 Score=23.66 Aligned_cols=69 Identities=12% Similarity=0.046 Sum_probs=44.0
Q ss_pred cchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecccc-CCccHHHHHH
Q 028841 13 YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR-FGMMAAQFKA 91 (203)
Q Consensus 13 ~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y-~~~~~~~~k~ 91 (203)
+|+.-..|...++.|++ .|++++++|+....|-+. +...+.+..++.||+.-=-+ .|++-..+..
T Consensus 236 ~G~~v~~Al~Aa~~L~~-~GI~v~VId~~~ikPlD~-------------~~l~~~~~~t~~vvtvEE~~~~GGlGs~Va~ 301 (356)
T PLN02683 236 FSKMVGYALKAAEILAK-EGISAEVINLRSIRPLDR-------------DTINASVRKTNRLVTVEEGWPQHGVGAEICA 301 (356)
T ss_pred ccHHHHHHHHHHHHHHh-cCCCEEEEECCCCCccCH-------------HHHHHHHhhcCeEEEEeCCCcCCCHHHHHHH
Confidence 45556666666777776 799999999988754110 00134566777776664433 4667777777
Q ss_pred HHHH
Q 028841 92 FLDA 95 (203)
Q Consensus 92 ~ld~ 95 (203)
++-.
T Consensus 302 ~l~e 305 (356)
T PLN02683 302 SVVE 305 (356)
T ss_pred HHHH
Confidence 7654
No 324
>PF09651 Cas_APE2256: CRISPR-associated protein (Cas_APE2256); InterPro: IPR013442 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 150 amino acids found in a family of Cas proteins in at least five archaeal and three bacterial species. In six of eight species, the protein is encoded the vicinity of a CRISPR/Cas locus.; PDB: 3QYF_A.
Probab=33.62 E-value=75 Score=22.68 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=28.9
Q ss_pred EEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 5 VYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 5 ilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
.+++++|.|...+..|+.+++-+.+ .|..+++..+.+.
T Consensus 24 ~~~Ll~SDT~~G~~~a~il~~~l~~-~g~~v~~~~i~~l 61 (136)
T PF09651_consen 24 EVVLLHSDTPDGRLCAEILKEYLEE-KGINVEVVEIEGL 61 (136)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHH-TT-EEEEEE---E
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeeee
Confidence 6788999999989999999999988 7888888776543
No 325
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=33.61 E-value=2e+02 Score=21.35 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=20.6
Q ss_pred cCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCC
Q 028841 81 RFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGS 118 (203)
Q Consensus 81 y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~ 118 (203)
|..++-..+++++..+.-+ ++-||=.+++++.+
T Consensus 70 ~~~~~~~~l~~~~~~~~il-----~r~rPdvii~nGpg 102 (170)
T PF08660_consen 70 YLTSIFTTLRAFLQSLRIL-----RRERPDVIISNGPG 102 (170)
T ss_pred hHhhHHHHHHHHHHHHHHH-----HHhCCCEEEEcCCc
Confidence 4445666777777766432 45577777777543
No 326
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=33.59 E-value=94 Score=23.97 Aligned_cols=37 Identities=16% Similarity=0.299 Sum_probs=27.2
Q ss_pred CceEEEEEcCC-cchHHHHHHHHHHhcccCCCceEEEEEc
Q 028841 2 ATKVYIVYYSM-YGHVEKLAEEIKKGASSVEGVEAKLWQV 40 (203)
Q Consensus 2 m~kilii~~S~-~g~T~~la~~i~~~~~~~~g~~v~~~~l 40 (203)
|.++-++|+++ .|.|+.|.+.+...-. .|..+.++..
T Consensus 3 ~g~l~~i~gpM~SGKT~eLl~r~~~~~~--~g~~v~vfkp 40 (201)
T COG1435 3 MGWLEFIYGPMFSGKTEELLRRARRYKE--AGMKVLVFKP 40 (201)
T ss_pred eEEEEEEEccCcCcchHHHHHHHHHHHH--cCCeEEEEec
Confidence 45788889998 5899999998866544 4667766553
No 327
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=33.54 E-value=1.5e+02 Score=24.64 Aligned_cols=69 Identities=10% Similarity=0.127 Sum_probs=43.9
Q ss_pred cchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecccc-CCccHHHHHH
Q 028841 13 YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR-FGMMAAQFKA 91 (203)
Q Consensus 13 ~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y-~~~~~~~~k~ 91 (203)
+|++-..+...++.|++ .|++++++|+....|-+. +...+.+.....||+.---+ .|++-+.+-.
T Consensus 209 ~G~~v~~al~Aa~~L~~-~Gi~~~VId~~~ikPlD~-------------~~i~~~~~~t~~vv~vEE~~~~gGlG~~va~ 274 (327)
T CHL00144 209 YSRMRHHVLQAVKVLVE-KGYDPEIIDLISLKPLDL-------------GTISKSVKKTHKVLIVEECMKTGGIGAELIA 274 (327)
T ss_pred ccHHHHHHHHHHHHHHh-cCCCEEEEecCcCCCCCH-------------HHHHHHHHhhCcEEEEECCCCCCCHHHHHHH
Confidence 45555666666777777 799999999988754210 00134566677777665444 4777777777
Q ss_pred HHHH
Q 028841 92 FLDA 95 (203)
Q Consensus 92 ~ld~ 95 (203)
++-.
T Consensus 275 ~l~e 278 (327)
T CHL00144 275 QINE 278 (327)
T ss_pred HHHH
Confidence 6644
No 328
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=33.24 E-value=52 Score=24.55 Aligned_cols=43 Identities=9% Similarity=0.016 Sum_probs=26.3
Q ss_pred hhhhcCeeEEecc-cc----CCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 67 ELAEADGFVFGFP-TR----FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 67 ~l~~aD~iiigsP-~y----~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...++|.||+... -+ ...-.+.+..||.+.. -++|.++.++++
T Consensus 66 ~~~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~-------~~~~~i~aic~G 113 (195)
T cd03138 66 DVPAPDLVIVPGLGGDPDELLLADNPALIAWLRRQH-------ANGATVAAACTG 113 (195)
T ss_pred ccCCCCEEEECCCcCCchhhhhhccHHHHHHHHHHH-------HcCCEEEEecHH
Confidence 4568999998442 11 1233456677777653 367777777664
No 329
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=33.22 E-value=1e+02 Score=21.89 Aligned_cols=46 Identities=4% Similarity=0.021 Sum_probs=28.1
Q ss_pred hhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEe
Q 028841 66 NELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYS 115 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t 115 (203)
..+..+|++++..-.-...-...++.|++.+... ...+.|+.++++
T Consensus 71 ~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~----~~~~~p~ivv~n 116 (165)
T cd01864 71 SYYRSANGAIIAYDITRRSSFESVPHWIEEVEKY----GASNVVLLLIGN 116 (165)
T ss_pred HHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHh----CCCCCcEEEEEE
Confidence 3567899999976554443334567777776421 124566666665
No 330
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=33.21 E-value=80 Score=22.66 Aligned_cols=27 Identities=7% Similarity=0.085 Sum_probs=18.7
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGAS 28 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~ 28 (203)
||+|||+|...+..- ..||+.+.+.+.
T Consensus 1 ~~~~ILfVC~gN~cR-SpmAEa~~~~~~ 27 (144)
T PRK11391 1 KFNSILVVCTGNICR-SPIGERLLRKRL 27 (144)
T ss_pred CCCeEEEEcCCcHhH-HHHHHHHHHHhc
Confidence 677899887655443 358888887654
No 331
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=33.02 E-value=1.4e+02 Score=22.33 Aligned_cols=46 Identities=9% Similarity=0.110 Sum_probs=33.2
Q ss_pred hhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 66 NELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..+..+|++||..-+-.-.--..++.|++.+.. ...+-++.++++-
T Consensus 74 ~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~-----~~~~~piilVGNK 119 (189)
T cd04121 74 SYSRGAQGIILVYDITNRWSFDGIDRWIKEIDE-----HAPGVPKILVGNR 119 (189)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHH-----hCCCCCEEEEEEC
Confidence 346799999999888876666667888888743 1345677777763
No 332
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.94 E-value=2.8e+02 Score=22.83 Aligned_cols=40 Identities=8% Similarity=-0.127 Sum_probs=30.1
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETL 44 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~ 44 (203)
+..+|.......+..-++...+.+++ -|++++++++.+.-
T Consensus 35 ~LaiI~vg~d~as~~Yv~~k~k~~~~-~Gi~~~~~~l~~~~ 74 (297)
T PRK14168 35 GLVTILVGESPASLSYVTLKIKTAHR-LGFHEIQDNQSVDI 74 (297)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCCC
Confidence 45666666566677778888888888 69999999987653
No 333
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.82 E-value=2.7e+02 Score=22.71 Aligned_cols=108 Identities=23% Similarity=0.275 Sum_probs=59.7
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHH-Hhc---cCC-CC---------C-CCCCCC--C--C
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEE-VLG---KMS-AP---------P-KSDVPI--I--T 64 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~-~~~---~~~-~~---------~-~~d~~~--~--~ 64 (203)
+..+|.-....-+..-++...+.+++ -|++++++++.+.-.++ ++. ... .+ | .+++.+ . .
T Consensus 34 ~Laii~vg~~~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~ 112 (286)
T PRK14175 34 KLSVILVGNDGASQSYVRSKKKAAEK-IGMISEIVHLEETATEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEA 112 (286)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhc
Confidence 45666666555667778888888888 69999999997653222 211 100 00 1 001100 0 0
Q ss_pred hhhhhhcCee--------EEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecC
Q 028841 65 PNELAEADGF--------VFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTG 117 (203)
Q Consensus 65 ~~~l~~aD~i--------iigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g 117 (203)
....++.|++ ..+-|.|.-.-|..+-.++++.. -.+.||.+.+++.+.
T Consensus 113 I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~ai~~ll~~~~-----i~l~Gk~vvVIGrs~ 168 (286)
T PRK14175 113 INPEKDVDGFHPINIGKLYIDEQTFVPCTPLGIMEILKHAD-----IDLEGKNAVVIGRSH 168 (286)
T ss_pred cCcccCcccCCccchHhHhcCCCCCCCCcHHHHHHHHHHcC-----CCCCCCEEEEECCCc
Confidence 2233455555 23344444445555666666542 258999999887654
No 334
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=32.66 E-value=1e+02 Score=24.27 Aligned_cols=39 Identities=15% Similarity=0.118 Sum_probs=30.0
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
+|+++.+|+-...++=+-.+++.+++ .++.++++...+.
T Consensus 109 riVvFvGSpi~e~ekeLv~~akrlkk-~~Vaidii~FGE~ 147 (259)
T KOG2884|consen 109 RIVVFVGSPIEESEKELVKLAKRLKK-NKVAIDIINFGEA 147 (259)
T ss_pred EEEEEecCcchhhHHHHHHHHHHHHh-cCeeEEEEEeccc
Confidence 68888899876666656666777777 7888998888764
No 335
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=32.57 E-value=1e+02 Score=21.67 Aligned_cols=31 Identities=13% Similarity=0.188 Sum_probs=24.0
Q ss_pred CcchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 12 MYGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 12 ~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
..|-.++.+..+++.+.+ .|.+++++.....
T Consensus 10 ~~GG~e~~~~~l~~~l~~-~G~~v~v~~~~~~ 40 (177)
T PF13439_consen 10 NIGGAERVVLNLARALAK-RGHEVTVVSPGVK 40 (177)
T ss_dssp SSSHHHHHHHHHHHHHHH-TT-EEEEEESS-T
T ss_pred CCChHHHHHHHHHHHHHH-CCCEEEEEEcCCC
Confidence 467788899999999988 7999999966544
No 336
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=32.48 E-value=1.3e+02 Score=24.14 Aligned_cols=29 Identities=21% Similarity=0.189 Sum_probs=23.0
Q ss_pred hhcCeeEEeccccCCccHHHHHHHHHHhc
Q 028841 69 AEADGFVFGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 69 ~~aD~iiigsP~y~~~~~~~~k~~ld~~~ 97 (203)
..+|++++..|.|+.--+..+..|+..+.
T Consensus 92 ~Gad~v~v~pP~y~~~~~~~i~~~~~~i~ 120 (285)
T TIGR00674 92 VGADGFLVVTPYYNKPTQEGLYQHFKAIA 120 (285)
T ss_pred cCCCEEEEcCCcCCCCCHHHHHHHHHHHH
Confidence 47899999999998755677777777764
No 337
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=32.47 E-value=1.2e+02 Score=20.78 Aligned_cols=46 Identities=11% Similarity=0.217 Sum_probs=26.3
Q ss_pred ceEEEEEcCCcc---hHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhc
Q 028841 3 TKVYIVYYSMYG---HVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLG 50 (203)
Q Consensus 3 ~kilii~~S~~g---~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~ 50 (203)
++|||+|.+... ..-++...+++.+.- .| .+..+|-.+..-...|.
T Consensus 20 ~NVLvLy~ks~k~a~~~Lk~~~~~A~~vkG-~g-T~~~vdCgd~e~kKLCK 68 (112)
T cd03067 20 NNVLVLYSKSAKSAEALLKLLSDVAQAVKG-QG-TIAWIDCGDSESRKLCK 68 (112)
T ss_pred CcEEEEEecchhhHHHHHHHHHHHHHHhcC-ce-eEEEEecCChHHHHHHH
Confidence 478999886433 333455555555543 23 57788877644333343
No 338
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=32.36 E-value=56 Score=25.30 Aligned_cols=43 Identities=12% Similarity=-0.008 Sum_probs=27.3
Q ss_pred hhhhcCeeEEec---cccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 67 ELAEADGFVFGF---PTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 67 ~l~~aD~iiigs---P~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
.+.++|+|++.- |.|...-...+..|+.+.. -++|+++.++++
T Consensus 87 ~~~~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~-------~~~k~iaaIC~g 132 (221)
T cd03141 87 DPSDYDAIFIPGGHGPMFDLPDNPDLQDLLREFY-------ENGKVVAAVCHG 132 (221)
T ss_pred CHhHceEEEECCCcccccccccCHHHHHHHHHHH-------HcCCEEEEEcch
Confidence 356899998863 3444444566777777653 356777666654
No 339
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=32.27 E-value=1.2e+02 Score=21.38 Aligned_cols=47 Identities=6% Similarity=-0.071 Sum_probs=27.3
Q ss_pred hhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 66 NELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..+..+|++|+....-...--..+..|+..+... ...+.++.++++-
T Consensus 71 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~pi~vv~nK 117 (165)
T cd01868 71 AYYRGAVGALLVYDITKKQTFENVERWLKELRDH----ADSNIVIMLVGNK 117 (165)
T ss_pred HHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEEC
Confidence 4567889888875554433334455666655321 2235777777663
No 340
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=32.01 E-value=1.2e+02 Score=22.05 Aligned_cols=79 Identities=18% Similarity=0.296 Sum_probs=43.2
Q ss_pred ceEEEEEcCC-----------cch--HHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhh
Q 028841 3 TKVYIVYYSM-----------YGH--VEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELA 69 (203)
Q Consensus 3 ~kilii~~S~-----------~g~--T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~ 69 (203)
+||+|+++.. +|+ -+.+-+.+.+...+ .|++++++.-... .++++. ..+...
T Consensus 2 ~~ilvlNGPNLN~LG~Rep~iYG~~tl~~i~~~~~~~a~~-~g~~v~~~QSN~E--GelId~------------I~~a~~ 66 (146)
T PRK05395 2 MKILVLNGPNLNLLGTREPEIYGSTTLADIEALLEEEAAE-LGVELEFFQSNHE--GELIDR------------IHEARD 66 (146)
T ss_pred CEEEEEeCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHH-cCCEEEEEeeCcH--HHHHHH------------HHhccc
Confidence 3899999972 453 34455566666655 6778777654321 112110 012234
Q ss_pred hcCeeEEeccccCCccHHHHHHHHHHhc
Q 028841 70 EADGFVFGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 70 ~aD~iiigsP~y~~~~~~~~k~~ld~~~ 97 (203)
.+|+|||=---|- .-+-.+++.+..+.
T Consensus 67 ~~dgiiINpga~T-HtSiAl~DAl~~~~ 93 (146)
T PRK05395 67 GADGIIINPGAYT-HTSVALRDALAAVS 93 (146)
T ss_pred CCcEEEECchHHH-HHHHHHHHHHHcCC
Confidence 6788888655553 22334566665553
No 341
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=31.94 E-value=1.9e+02 Score=22.03 Aligned_cols=45 Identities=18% Similarity=0.315 Sum_probs=29.7
Q ss_pred EEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecc
Q 028841 5 VYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFP 79 (203)
Q Consensus 5 ilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP 79 (203)
|.||-+. -||-..+.+++.+ .|+++.+++ + .+++.++|+||+--+
T Consensus 2 i~iidyg-~gN~~s~~~al~~-----~g~~~~~v~--~----------------------~~~l~~~D~lIlPG~ 46 (192)
T PRK13142 2 IVIVDYG-LGNISNVKRAIEH-----LGYEVVVSN--T----------------------SKIIDQAETIILPGV 46 (192)
T ss_pred EEEEEcC-CccHHHHHHHHHH-----cCCCEEEEe--C----------------------HHHhccCCEEEECCC
Confidence 5666444 5787777777765 355666654 1 346788999988544
No 342
>PRK10638 glutaredoxin 3; Provisional
Probab=31.90 E-value=1.3e+02 Score=18.85 Aligned_cols=35 Identities=11% Similarity=0.169 Sum_probs=20.4
Q ss_pred CceEEEEEcC-CcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 2 ATKVYIVYYS-MYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 2 m~kilii~~S-~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
|.+|. +|++ ..+...++-+.+.+ .|++.+.+++.+
T Consensus 1 m~~v~-ly~~~~Cp~C~~a~~~L~~-----~gi~y~~~dv~~ 36 (83)
T PRK10638 1 MANVE-IYTKATCPFCHRAKALLNS-----KGVSFQEIPIDG 36 (83)
T ss_pred CCcEE-EEECCCChhHHHHHHHHHH-----cCCCcEEEECCC
Confidence 33555 4554 44666665554443 477888888754
No 343
>PF12076 Wax2_C: WAX2 C-terminal domain; InterPro: IPR021940 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 170 amino acids in length. This domain is found associated with PF04116 from PFAM. This domain has a conserved LEGW sequence motif. This region has similarity to short chain dehydrogenases [].
Probab=31.65 E-value=45 Score=24.73 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=22.7
Q ss_pred cchHHHHHHHHHHhcccCCCceEEEEE
Q 028841 13 YGHVEKLAEEIKKGASSVEGVEAKLWQ 39 (203)
Q Consensus 13 ~g~T~~la~~i~~~~~~~~g~~v~~~~ 39 (203)
+|+|.+++.+|+..|.+ .|+.|.+.+
T Consensus 4 ~G~~sKvaraiA~~LC~-rgv~V~m~~ 29 (164)
T PF12076_consen 4 TGNTSKVARAIALALCR-RGVQVVMLS 29 (164)
T ss_pred cccccHHHHHHHHHHHh-cCCEEEEec
Confidence 68899999999999998 788888773
No 344
>PF13552 DUF4127: Protein of unknown function (DUF4127)
Probab=31.48 E-value=2.3e+02 Score=25.08 Aligned_cols=32 Identities=19% Similarity=0.338 Sum_probs=20.6
Q ss_pred HHHHHHHHHhcccccccCCCCCceEEEEecCCCCCC
Q 028841 87 AQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGG 122 (203)
Q Consensus 87 ~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~ 122 (203)
.....|++++... .-+||++++.-.+-..++.
T Consensus 329 ~~~~~f~~~I~~~----l~~G~~VaiaDva~~NGad 360 (497)
T PF13552_consen 329 RNLREFVDRIEEY----LAKGKPVAIADVAYANGAD 360 (497)
T ss_pred ccHHHHHHHHHHH----HHcCCcEEEEEcCcCCCcc
Confidence 4567777777533 2368999998776444433
No 345
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=31.43 E-value=1.8e+02 Score=20.27 Aligned_cols=48 Identities=8% Similarity=-0.036 Sum_probs=30.1
Q ss_pred hhhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 65 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+..+|++|+....-...-...+..|++.+... ...+.|+.++++-
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~----~~~~~pivvv~nK 114 (164)
T smart00175 67 SSYYRGAVGALLVYDITNRESFENLKNWLKELREY----ADPNVVIMLVGNK 114 (164)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEEc
Confidence 34567899999987765533334455676665321 1247888888764
No 346
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.34 E-value=3e+02 Score=22.64 Aligned_cols=40 Identities=8% Similarity=0.148 Sum_probs=30.8
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
++..+|......-+..-++...+.+++ .|++++++++.+.
T Consensus 32 P~Laii~vg~d~as~~Yv~~k~k~~~~-~Gi~~~~~~l~~~ 71 (295)
T PRK14174 32 PGLTVIIVGEDPASQVYVRNKAKSCKE-IGMNSTVIELPAD 71 (295)
T ss_pred CeEEEEEeCCChHHHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 356666666666677778888888888 7999999999865
No 347
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=31.30 E-value=1.1e+02 Score=21.56 Aligned_cols=60 Identities=25% Similarity=0.205 Sum_probs=30.5
Q ss_pred eeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCC--ChHHHHHHHHHHHHHcC
Q 028841 73 GFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGG--GQETTALTAITQLVHHG 138 (203)
Q Consensus 73 ~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~--~~~~~~~~l~~~l~~~g 138 (203)
.||+|.+.+....++.++.=++.-..++ -+++.--++.|+|.... ..+ ...+.+.+...|
T Consensus 3 IvVLG~~~~~~~~~~~~~~R~~~a~~l~----~~~~~~~ii~sGg~~~~~~~~e--a~~m~~~l~~~g 64 (150)
T cd06259 3 IVVLGGGVNGDGPSPILAERLDAAAELY----RAGPAPKLIVSGGQGPGEGYSE--AEAMARYLIELG 64 (150)
T ss_pred EEEeCCccCCCCCChHHHHHHHHHHHHH----HhCCCCEEEEcCCCCCCCCCCH--HHHHHHHHHHcC
Confidence 4789999997766644444444433222 13333344445544322 122 234566666655
No 348
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=31.30 E-value=97 Score=24.94 Aligned_cols=40 Identities=20% Similarity=0.290 Sum_probs=28.6
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
+++.++|.+...++....+.+.+.+.+ .|+++..+.+.+.
T Consensus 132 k~igvl~~~~~~~~~~~~~~~~~~a~~-~g~~l~~~~v~~~ 171 (294)
T PF04392_consen 132 KRIGVLYDPSEPNSVAQIEQLRKAAKK-LGIELVEIPVPSS 171 (294)
T ss_dssp -EEEEEEETT-HHHHHHHHHHHHHHHH-TT-EEEEEEESSG
T ss_pred CEEEEEecCCCccHHHHHHHHHHHHHH-cCCEEEEEecCcH
Confidence 578888988777777788888888777 6888877777653
No 349
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=31.29 E-value=1.1e+02 Score=22.57 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=26.9
Q ss_pred EEEEEc-CCcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 5 VYIVYY-SMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 5 ilii~~-S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
++.+.| |..|.| .||+.+.+.|.+ .|..+.++|-..
T Consensus 4 vIwltGlsGsGKt-TlA~~L~~~L~~-~g~~~~~LDgD~ 40 (156)
T PF01583_consen 4 VIWLTGLSGSGKT-TLARALERRLFA-RGIKVYLLDGDN 40 (156)
T ss_dssp EEEEESSTTSSHH-HHHHHHHHHHHH-TTS-EEEEEHHH
T ss_pred EEEEECCCCCCHH-HHHHHHHHHHHH-cCCcEEEecCcc
Confidence 444555 456777 799999999998 799999998644
No 350
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=31.17 E-value=63 Score=26.42 Aligned_cols=43 Identities=19% Similarity=-0.016 Sum_probs=26.4
Q ss_pred hhhhcCeeEEecc-ccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 67 ELAEADGFVFGFP-TRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 67 ~l~~aD~iiigsP-~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...++|.||+... ......++.+..||.+.. -++|.++.++++
T Consensus 72 ~~~~~D~livpGg~~~~~~~~~~l~~~l~~~~-------~~~~~i~aic~g 115 (322)
T PRK09393 72 LLDRADTIVIPGWRGPDAPVPEPLLEALRAAH-------ARGARLCSICSG 115 (322)
T ss_pred ccCCCCEEEECCCCcccccCCHHHHHHHHHHH-------HcCCEEEEEcHH
Confidence 4678899988542 111223566777776653 367777777764
No 351
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=30.92 E-value=57 Score=25.02 Aligned_cols=47 Identities=23% Similarity=0.132 Sum_probs=34.2
Q ss_pred hhhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCC
Q 028841 65 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGS 118 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~ 118 (203)
.+.+..+|.|++.+|.....-....++++|.... .|-+-.++.+.+.
T Consensus 59 ~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~-------agVk~~v~ss~~~ 105 (233)
T PF05368_consen 59 VAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKA-------AGVKHFVPSSFGA 105 (233)
T ss_dssp HHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHH-------HT-SEEEESEESS
T ss_pred HHHHcCCceEEeecCcchhhhhhhhhhHHHhhhc-------cccceEEEEEecc
Confidence 5678999999999999887777888999998742 2334445655543
No 352
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=30.61 E-value=80 Score=25.48 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=30.0
Q ss_pred eEEEEEc----CCcchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 4 KVYIVYY----SMYGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilii~~----S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
||+||.. +..|-++..+..+++.+.+ .|++|+++.....
T Consensus 1 ~i~~i~~~~~~~~~gG~~~~~~~la~~L~~-~g~~v~v~~~~~~ 43 (363)
T cd04955 1 KIAIIGTRGIPAKYGGFETFVEELAPRLVA-RGHEVTVYCRSPY 43 (363)
T ss_pred CeEEEecCcCCcccCcHHHHHHHHHHHHHh-cCCCEEEEEccCC
Confidence 5777733 2367788999999999998 7999999876543
No 353
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=30.37 E-value=51 Score=21.77 Aligned_cols=63 Identities=14% Similarity=0.143 Sum_probs=38.6
Q ss_pred CCcchHHHHHHHHHHhcccC--CCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCCccHHH
Q 028841 11 SMYGHVEKLAEEIKKGASSV--EGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQ 88 (203)
Q Consensus 11 S~~g~T~~la~~i~~~~~~~--~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~~~~~~ 88 (203)
+.+-+++...+.+.+-+++. .-++.+++|+.+-+ .+.+.|- |++||+---..|.+
T Consensus 12 g~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP----------------------~lAE~~~-IvATPtLIK~~P~P 68 (87)
T TIGR02654 12 GNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNP----------------------QLAEEDK-ILATPTLSKILPPP 68 (87)
T ss_pred CCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCH----------------------hHHhHCC-EEEecHHhhcCCCC
Confidence 34556677777776666542 23588899987631 2333333 56788877666777
Q ss_pred HHHHHHHh
Q 028841 89 FKAFLDAT 96 (203)
Q Consensus 89 ~k~~ld~~ 96 (203)
.+.++-.+
T Consensus 69 ~rriiGdl 76 (87)
T TIGR02654 69 VRKIIGDL 76 (87)
T ss_pred cceeeccc
Confidence 77665444
No 354
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.36 E-value=1e+02 Score=25.20 Aligned_cols=37 Identities=14% Similarity=0.030 Sum_probs=29.0
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEE
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQ 39 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~ 39 (203)
|+||+|++-........+++.+.+-+.+ .|+++.+.+
T Consensus 5 ~~~i~ii~~~~~~~~~~~~~~l~~~L~~-~g~~v~~~~ 41 (296)
T PRK04539 5 FHNIGIVTRPNTPDIQDTAHTLITFLKQ-HGFTVYLDE 41 (296)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEec
Confidence 4579998887777778889999888877 688877643
No 355
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=30.36 E-value=1.8e+02 Score=20.58 Aligned_cols=47 Identities=9% Similarity=0.017 Sum_probs=27.3
Q ss_pred hhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 66 NELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..+..+|++|+..-.-...--..+..|+..+... ...+.++.++++-
T Consensus 70 ~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~----~~~~~~~iiv~nK 116 (166)
T cd01869 70 SYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRY----ASENVNKLLVGNK 116 (166)
T ss_pred HHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHh----CCCCCcEEEEEEC
Confidence 4567899999986654433233445565555321 1246777777653
No 356
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=30.34 E-value=84 Score=25.24 Aligned_cols=39 Identities=21% Similarity=0.411 Sum_probs=30.0
Q ss_pred eEEEEE--cCC-cchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 4 KVYIVY--YSM-YGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilii~--~S~-~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
|||+|. +++ .|-.+.++..+.+.+.+ .|++++++.....
T Consensus 1 kil~i~~~~~p~~gG~~~~~~~l~~~L~~-~g~~v~v~~~~~~ 42 (357)
T cd03795 1 RVLHVGKFYPPDRGGIEQVIRDLAEGLAA-RGIEVAVLCASPE 42 (357)
T ss_pred CeeEecCCCCCCCCcHHHHHHHHHHHHHh-CCCceEEEecCCC
Confidence 577775 344 56677888899999988 6999999987654
No 357
>PRK05586 biotin carboxylase; Validated
Probab=30.21 E-value=2.9e+02 Score=23.83 Aligned_cols=31 Identities=23% Similarity=0.253 Sum_probs=20.4
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEE
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLW 38 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~ 38 (203)
||+||+|+..+. ++..+.+.+++ .|.++..+
T Consensus 1 ~~kkvli~g~G~------~~~~~~~aa~~-lG~~~v~v 31 (447)
T PRK05586 1 MFKKILIANRGE------IAVRIIRACRE-MGIETVAV 31 (447)
T ss_pred CcceEEEECCcH------HHHHHHHHHHH-cCCcEEEE
Confidence 788999987763 44555566666 57774433
No 358
>PF02595 Gly_kinase: Glycerate kinase family; InterPro: IPR004381 This family includes glycerate kinase 2 (2.7.1.31 from EC), which catalyses the phosphorylation of (R)-glycerate to 3-phospho-(R)-glycerate in the presence of ATP. These proteins consist of two different alpha/beta domains: domain 1 has a flavodoxin-like fold, while domain 2 has a restriction enzyme-like fold (domain 2 is inserted into domain 1).; GO: 0008887 glycerate kinase activity, 0031388 organic acid phosphorylation; PDB: 3CWC_B 1TO6_A.
Probab=30.21 E-value=82 Score=26.84 Aligned_cols=40 Identities=28% Similarity=0.332 Sum_probs=24.4
Q ss_pred eEEEEEcCCcc--hHHHHHHHHHHhcccC-CCceEEEEEcCCC
Q 028841 4 KVYIVYYSMYG--HVEKLAEEIKKGASSV-EGVEAKLWQVPET 43 (203)
Q Consensus 4 kilii~~S~~g--~T~~la~~i~~~~~~~-~g~~v~~~~l~~~ 43 (203)
||||.-.|-.| .+..+++.+++++++. .+.++..+.+.|-
T Consensus 2 kiliApDsFKgslsa~ea~~ai~~g~~~~~p~~~~~~~PlaDG 44 (377)
T PF02595_consen 2 KILIAPDSFKGSLSAAEAAEAIAEGIRRVFPDAEVVLIPLADG 44 (377)
T ss_dssp EEEE----BTTTB-HHHHHHHHHHHHHCCSTTSEEEE----SS
T ss_pred eEEEEccCCCCCcCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Confidence 99999989665 5788999999999874 4667777777664
No 359
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=30.18 E-value=1e+02 Score=24.92 Aligned_cols=84 Identities=20% Similarity=0.272 Sum_probs=45.9
Q ss_pred eEEEE-EcCCcch--------HHHHHHHHHHhcccCCCceEEEEEcCCC-CcHHHhccCCCCCCCCCCCCChhhhhhcCe
Q 028841 4 KVYIV-YYSMYGH--------VEKLAEEIKKGASSVEGVEAKLWQVPET-LPEEVLGKMSAPPKSDVPIITPNELAEADG 73 (203)
Q Consensus 4 kilii-~~S~~g~--------T~~la~~i~~~~~~~~g~~v~~~~l~~~-~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ 73 (203)
|++|. |+..+|. -+.|.+.+.+.+.+ .|++ ++..... ++. +.........|......+.++.+|+
T Consensus 2 kilifEyA~atg~ee~~i~~EG~aMlesll~~F~~-~~ve--~y~~~~f~~~~--ig~~f~s~~~~~~~~~ek~le~~Da 76 (307)
T COG1821 2 KILIFEYAVATGIEEFNILAEGRAMLESLLRAFAK-SGVE--VYETLTFADPS--IGVRFKSTADDVLRDEEKALEKADA 76 (307)
T ss_pred eEEEEEeecccCccchhhhHhHHHHHHHHHHHHHh-cCce--EEEeecccccc--cceeeecchhHHHHHHHHHHhcCCe
Confidence 78887 4444442 35688888888887 5643 3332222 111 0000000011111112457889999
Q ss_pred eEEeccccCCccHHHHHHH
Q 028841 74 FVFGFPTRFGMMAAQFKAF 92 (203)
Q Consensus 74 iiigsP~y~~~~~~~~k~~ 92 (203)
-++.+|.-.+-++...|-+
T Consensus 77 ~LvIAPEdd~lLy~Ltri~ 95 (307)
T COG1821 77 TLVIAPEDDGLLYSLTRIY 95 (307)
T ss_pred eEEEecCcCChHHHHHHHH
Confidence 9999998777776655544
No 360
>PRK15453 phosphoribulokinase; Provisional
Probab=30.13 E-value=1.3e+02 Score=24.59 Aligned_cols=42 Identities=19% Similarity=0.115 Sum_probs=27.3
Q ss_pred CCce--EEEEEcC-CcchHHHHHHHHHHhcccCCCceEEEEEcCCCC
Q 028841 1 MATK--VYIVYYS-MYGHVEKLAEEIKKGASSVEGVEAKLWQVPETL 44 (203)
Q Consensus 1 Mm~k--ilii~~S-~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~ 44 (203)
|++| +..|.|+ ..|.| .+++.+++.++. .+..+.+++..+++
T Consensus 1 Ms~k~piI~ItG~SGsGKT-Tva~~l~~if~~-~~~~~~vi~~D~yh 45 (290)
T PRK15453 1 MSAKHPIIAVTGSSGAGTT-TVKRAFEKIFRR-ENINAAVVEGDSFH 45 (290)
T ss_pred CCCCCcEEEEECCCCCCHH-HHHHHHHHHHhh-cCCCeEEEeccccc
Confidence 6544 4445555 45655 578888888876 56667777776654
No 361
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.02 E-value=1.5e+02 Score=24.10 Aligned_cols=41 Identities=12% Similarity=0.058 Sum_probs=25.4
Q ss_pred HHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecc
Q 028841 19 LAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFP 79 (203)
Q Consensus 19 la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP 79 (203)
+.+.++..+.. .|..|.+.+-...+ ..+.+.+||.||-+++
T Consensus 171 vGkpia~~L~~-~gatVtv~~~~t~~-------------------L~~~~~~aDIvI~AtG 211 (283)
T PRK14192 171 LGKPMAMMLLN-ANATVTICHSRTQN-------------------LPELVKQADIIVGAVG 211 (283)
T ss_pred HHHHHHHHHHh-CCCEEEEEeCCchh-------------------HHHHhccCCEEEEccC
Confidence 44444554444 46677777642211 1356789999999995
No 362
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=29.97 E-value=71 Score=26.43 Aligned_cols=31 Identities=23% Similarity=0.317 Sum_probs=21.6
Q ss_pred chHHHHHHHHHHhcccCCCceEEEEEcCCCCc
Q 028841 14 GHVEKLAEEIKKGASSVEGVEAKLWQVPETLP 45 (203)
Q Consensus 14 g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~ 45 (203)
|..-..+...++.+.+ .|++++++||+...|
T Consensus 209 g~mv~~al~AAe~l~~-~Gis~EVIDLRTl~P 239 (324)
T COG0022 209 GAMVHTALEAAEELEK-EGISAEVIDLRTLSP 239 (324)
T ss_pred chHHHHHHHHHHHHhh-cCCCeEEEeccccCc
Confidence 3334445555666666 699999999998754
No 363
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=29.94 E-value=2.9e+02 Score=23.46 Aligned_cols=71 Identities=20% Similarity=0.206 Sum_probs=41.7
Q ss_pred hhhhhcCeeEEeccccCCc-cHHHHHHHHHHhcc------------cccc-----cCCCCCceEEEEecCCCCCChHHHH
Q 028841 66 NELAEADGFVFGFPTRFGM-MAAQFKAFLDATGG------------LWRT-----QQLAGKPAGMFYSTGSQGGGQETTA 127 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~-~~~~~k~~ld~~~~------------~~~~-----~~l~gK~~~~~~t~g~~~~~~~~~~ 127 (203)
+.-.+...+|+-+|.|+.- .....-.+|-.+.+ -|.. -++.||..++++.+- - |.+
T Consensus 87 ~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~~G~el~GKTLgvlG~Gr-I--Gse--- 160 (406)
T KOG0068|consen 87 KAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNRVKYLGWELRGKTLGVLGLGR-I--GSE--- 160 (406)
T ss_pred hhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCceeecceeeeEEeccEEEEeeccc-c--hHH---
Confidence 3456778889999999954 33333334333321 1211 246788888887642 1 222
Q ss_pred HHHHHHHHHcCcEEecC
Q 028841 128 LTAITQLVHHGMIFVPI 144 (203)
Q Consensus 128 ~~l~~~l~~~g~~~v~~ 144 (203)
+...+...||.+++.
T Consensus 161 --VA~r~k~~gm~vI~~ 175 (406)
T KOG0068|consen 161 --VAVRAKAMGMHVIGY 175 (406)
T ss_pred --HHHHHHhcCceEEee
Confidence 345667788888864
No 364
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.73 E-value=3.1e+02 Score=22.39 Aligned_cols=41 Identities=15% Similarity=0.243 Sum_probs=31.5
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCC
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETL 44 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~ 44 (203)
++..+|......-+..-++...+.+++ -|++++.+++.+.-
T Consensus 32 P~Laii~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~~ 72 (284)
T PRK14170 32 PGLAVVLVGDNQASRTYVRNKQKRTEE-AGMKSVLIELPENV 72 (284)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCCC
Confidence 356677666666677778888888888 79999999998753
No 365
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=29.59 E-value=1.6e+02 Score=24.55 Aligned_cols=16 Identities=31% Similarity=0.372 Sum_probs=12.8
Q ss_pred hhhhcCeeEEeccccC
Q 028841 67 ELAEADGFVFGFPTRF 82 (203)
Q Consensus 67 ~l~~aD~iiigsP~y~ 82 (203)
...+.|++++++|...
T Consensus 65 ~~~~vD~Vf~alP~~~ 80 (343)
T PRK00436 65 ILAGADVVFLALPHGV 80 (343)
T ss_pred HhcCCCEEEECCCcHH
Confidence 4467899999999963
No 366
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.59 E-value=3.2e+02 Score=22.45 Aligned_cols=40 Identities=13% Similarity=0.149 Sum_probs=30.5
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETL 44 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~ 44 (203)
+..+|.......+..-++...+.+++ -|++++++++.+..
T Consensus 33 ~LaiI~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~~ 72 (293)
T PRK14185 33 HLAAILVGHDGGSETYVANKVKACEE-CGFKSSLIRYESDV 72 (293)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCCC
Confidence 45666666666677778888888888 79999999997764
No 367
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=29.48 E-value=2.9e+02 Score=21.93 Aligned_cols=33 Identities=21% Similarity=0.177 Sum_probs=23.8
Q ss_pred EEEEEc-CCcchHHHHHHHHHHhcccCCCceEEEE
Q 028841 5 VYIVYY-SMYGHVEKLAEEIKKGASSVEGVEAKLW 38 (203)
Q Consensus 5 ilii~~-S~~g~T~~la~~i~~~~~~~~g~~v~~~ 38 (203)
|.++.. +.+.....+.+.+.+.+++ .|.++.++
T Consensus 2 I~vi~~~~~~~f~~~i~~gi~~~a~~-~g~~v~~~ 35 (298)
T cd06302 2 IAFVPKVTGIPYFNRMEEGAKEAAKE-LGVDAIYV 35 (298)
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHHH-hCCeEEEE
Confidence 544544 3456677889999999988 78887765
No 368
>PRK09301 circadian clock protein KaiB; Provisional
Probab=29.39 E-value=58 Score=22.23 Aligned_cols=68 Identities=15% Similarity=0.166 Sum_probs=40.4
Q ss_pred EEEEc-CCcchHHHHHHHHHHhcccC--CCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccC
Q 028841 6 YIVYY-SMYGHVEKLAEEIKKGASSV--EGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRF 82 (203)
Q Consensus 6 lii~~-S~~g~T~~la~~i~~~~~~~--~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~ 82 (203)
|=+|. +.+-+++...+.+.+-+++. ..++.+++|+.+-+ .+.+.+- |++||+--
T Consensus 9 LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qP----------------------elAE~~~-IvATPTLI 65 (103)
T PRK09301 9 LKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNP----------------------QLAEEDK-ILATPTLA 65 (103)
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCH----------------------hHHhHCC-eEEecHHh
Confidence 43443 34566777777776666542 23688899987631 2333333 56788776
Q ss_pred CccHHHHHHHHHHh
Q 028841 83 GMMAAQFKAFLDAT 96 (203)
Q Consensus 83 ~~~~~~~k~~ld~~ 96 (203)
-..|.+.+.++-.+
T Consensus 66 K~~P~P~rriiGDl 79 (103)
T PRK09301 66 KILPPPVRKIIGDL 79 (103)
T ss_pred hcCCCCcceeeccc
Confidence 66666666555443
No 369
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=29.35 E-value=65 Score=24.77 Aligned_cols=32 Identities=16% Similarity=0.046 Sum_probs=16.9
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEE
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLW 38 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~ 38 (203)
||+ ..+|.+...|--..+++.++ + .|.++.+.
T Consensus 1 m~k-~ilItGas~giG~~la~~l~----~-~g~~v~~~ 32 (248)
T PRK06947 1 MRK-VVLITGASRGIGRATAVLAA----A-RGWSVGIN 32 (248)
T ss_pred CCc-EEEEeCCCCcHHHHHHHHHH----H-CCCEEEEE
Confidence 664 44555554454445555554 3 46666544
No 370
>PRK03995 hypothetical protein; Provisional
Probab=29.33 E-value=1.9e+02 Score=23.37 Aligned_cols=23 Identities=17% Similarity=0.083 Sum_probs=16.8
Q ss_pred EEEEEcCCcchHHHHHHHHHHhc
Q 028841 5 VYIVYYSMYGHVEKLAEEIKKGA 27 (203)
Q Consensus 5 ilii~~S~~g~T~~la~~i~~~~ 27 (203)
++||+....--+..+++.+.+..
T Consensus 3 ~~iv~S~~DpAs~~i~~~L~~~~ 25 (267)
T PRK03995 3 YLIVYSKKDPASQNIKELLIELF 25 (267)
T ss_pred EEEEEeCCChhhHHHHHHHHHhc
Confidence 67777776666777888887754
No 371
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.31 E-value=3.2e+02 Score=22.35 Aligned_cols=40 Identities=13% Similarity=0.166 Sum_probs=30.3
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETL 44 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~ 44 (203)
+..+|.......+..-++...+.+++ .|++++.+++.+.-
T Consensus 33 ~LaiI~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~~ 72 (285)
T PRK14191 33 KLAVILVGKDPASQTYVNMKIKACER-VGMDSDLHTLQENT 72 (285)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCCC
Confidence 56666666565666778888888888 79999999998753
No 372
>PLN03139 formate dehydrogenase; Provisional
Probab=29.03 E-value=3.7e+02 Score=23.00 Aligned_cols=65 Identities=12% Similarity=0.117 Sum_probs=34.7
Q ss_pred HHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCCccHHHHHHHHH
Q 028841 19 LAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLD 94 (203)
Q Consensus 19 la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~~~~~~~k~~ld 94 (203)
|.+.+++.+.. .|.++..+|......+ ..........++ ..+.+.++|.|++..|.. +..+.+++
T Consensus 210 IG~~vA~~L~a-fG~~V~~~d~~~~~~~-~~~~~g~~~~~~----l~ell~~sDvV~l~lPlt-----~~T~~li~ 274 (386)
T PLN03139 210 IGRLLLQRLKP-FNCNLLYHDRLKMDPE-LEKETGAKFEED----LDAMLPKCDVVVINTPLT-----EKTRGMFN 274 (386)
T ss_pred HHHHHHHHHHH-CCCEEEEECCCCcchh-hHhhcCceecCC----HHHHHhhCCEEEEeCCCC-----HHHHHHhC
Confidence 55566666655 6778877775432211 111100000111 245668999999998843 34555554
No 373
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=29.01 E-value=1.7e+02 Score=20.29 Aligned_cols=15 Identities=13% Similarity=0.122 Sum_probs=10.9
Q ss_pred hhhhcCeeEEecccc
Q 028841 67 ELAEADGFVFGFPTR 81 (203)
Q Consensus 67 ~l~~aD~iiigsP~y 81 (203)
+-.++|.||+|+--.
T Consensus 100 ~~~~~dlIV~Gs~g~ 114 (146)
T cd01989 100 ADHGITKLVMGASSD 114 (146)
T ss_pred HHcCCCEEEEeccCC
Confidence 335689999998644
No 374
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.95 E-value=3.2e+02 Score=22.32 Aligned_cols=40 Identities=5% Similarity=0.204 Sum_probs=29.6
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
++..+|......-+..-++...+.+++ -|++++++.+.+.
T Consensus 32 P~Laii~vg~d~as~~Yv~~k~k~~~~-~Gi~~~~~~l~~~ 71 (286)
T PRK14184 32 PGLAVILVGEDPASQVYVRNKERACED-AGIVSEAFRLPAD 71 (286)
T ss_pred CEEEEEEeCCChhHHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 345666665555666778888888888 7999999998764
No 375
>COG0799 Uncharacterized homolog of plant Iojap protein [Function unknown]
Probab=28.83 E-value=2.1e+02 Score=20.01 Aligned_cols=57 Identities=16% Similarity=0.107 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCCccHHHHHHHHHH
Q 028841 16 VEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDA 95 (203)
Q Consensus 16 T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~ 95 (203)
+..+++.+.+.+.+..+.++..+|+.+. -.-+|-+||+|-.-.-.+.+..-+..+.
T Consensus 3 ~~~l~~~i~~alddkKAeDIv~lDv~~~------------------------s~~tDyfVIatg~s~rhv~Aiad~i~~~ 58 (115)
T COG0799 3 MEELLEVIVEALDDKKAEDIVVLDVSGK------------------------SSLTDYFVIATGNSSRHVKAIADNVKEE 58 (115)
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEccCC------------------------cccccEEEEEEeCchHHHHHHHHHHHHH
Confidence 4567777888777655668999998764 2357899999876655555444444443
Q ss_pred h
Q 028841 96 T 96 (203)
Q Consensus 96 ~ 96 (203)
+
T Consensus 59 ~ 59 (115)
T COG0799 59 L 59 (115)
T ss_pred H
Confidence 3
No 376
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=28.81 E-value=84 Score=22.18 Aligned_cols=47 Identities=11% Similarity=0.060 Sum_probs=31.2
Q ss_pred hhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 66 NELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..+..+|++|+...+-.-.--..++.|++.+... ...+.++.++++-
T Consensus 67 ~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~----~~~~~~iivvg~K 113 (162)
T PF00071_consen 67 IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKY----KPEDIPIIVVGNK 113 (162)
T ss_dssp HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHH----STTTSEEEEEEET
T ss_pred cccccccccccccccccccccccccccccccccc----ccccccceeeecc
Confidence 3577999999998776655555667777776532 1135677777664
No 377
>PRK00211 sulfur relay protein TusC; Validated
Probab=28.79 E-value=1.6e+02 Score=20.44 Aligned_cols=40 Identities=8% Similarity=0.117 Sum_probs=20.4
Q ss_pred CceEEEEEc-CCcch--HHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 2 ATKVYIVYY-SMYGH--VEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 2 m~kilii~~-S~~g~--T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
|+|+++|.. +|+|+ ++.-.+.... +.. .+.++.++-+.|-
T Consensus 1 M~ki~~i~~~~Pyg~~~~~eaLd~ala-~~a-~~~~v~vff~~Dg 43 (119)
T PRK00211 1 MKRIAFVFRQAPHGTASGREGLDALLA-TSA-FTEDIGVFFIDDG 43 (119)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHHHH-Hhc-ccCCeeEEEEhhh
Confidence 458887765 57875 2222322222 111 2336777766553
No 378
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=28.77 E-value=3.3e+02 Score=22.29 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=18.2
Q ss_pred hhhhhcCeeEEeccccCCccHHHHHHHHHHh
Q 028841 66 NELAEADGFVFGFPTRFGMMAAQFKAFLDAT 96 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~ 96 (203)
+.+..+|.||+..|.+. ++..++.+
T Consensus 70 e~~~~aD~Vi~~v~~~~------~~~v~~~l 94 (328)
T PRK14618 70 EALAGADFAVVAVPSKA------LRETLAGL 94 (328)
T ss_pred HHHcCCCEEEEECchHH------HHHHHHhc
Confidence 44678999999999983 45555544
No 379
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=28.75 E-value=2.7e+02 Score=22.56 Aligned_cols=35 Identities=14% Similarity=0.126 Sum_probs=25.0
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEE
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLW 38 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~ 38 (203)
+++.++|.+.....+.+++.+.+.+++ .|.++...
T Consensus 137 ~~v~~l~~~~~~~g~~~~~~~~~~~~~-~g~~v~~~ 171 (344)
T cd06348 137 KRVAVFYAQDDAFSVSETEIFQKALRD-QGLNLVTV 171 (344)
T ss_pred eEEEEEEeCCchHHHHHHHHHHHHHHH-cCCEEEEE
Confidence 467778876555667788888888887 67776543
No 380
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=28.72 E-value=1.2e+02 Score=24.65 Aligned_cols=38 Identities=16% Similarity=0.105 Sum_probs=29.7
Q ss_pred ceEEEEEcCC---cchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 3 TKVYIVYYSM---YGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 3 ~kilii~~S~---~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
+||.|+++.. +--+-+-++.+.+.+.+ .|+++..+++.
T Consensus 4 ~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~-~g~~~~~~~~~ 44 (296)
T PRK14569 4 EKIVVLYGGDSPEREVSLKSGKAVLDSLIS-QGYDAVGVDAS 44 (296)
T ss_pred cEEEEEeCCCCCchHhHHHHHHHHHHHHHH-cCCEEEEEcCC
Confidence 5899999854 34566778888898888 79999888865
No 381
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.59 E-value=3.3e+02 Score=22.27 Aligned_cols=110 Identities=14% Similarity=0.183 Sum_probs=61.3
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcH-HHhc---cC-CCC---------C-CCCCCC--C--
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPE-EVLG---KM-SAP---------P-KSDVPI--I-- 63 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~-~~~~---~~-~~~---------~-~~d~~~--~-- 63 (203)
++..+|.......+..-++...+.+++ -|++++++++.+.-.+ ++.. .. ..+ | ..++.+ .
T Consensus 33 P~LaiI~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~~t~~el~~~I~~lN~D~~V~GIlvqlPlP~~id~~~i~~ 111 (284)
T PRK14193 33 PGLGTVLVGDDPGSQAYVRGKHRDCAE-VGITSIRRDLPADATQEELNAVIDELNADPACTGYIVQLPLPKHLDENAVLE 111 (284)
T ss_pred ceEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHh
Confidence 356677666666677778888888888 7999999999764322 2211 10 000 1 011100 0
Q ss_pred ChhhhhhcCee--------EEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCC
Q 028841 64 TPNELAEADGF--------VFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGS 118 (203)
Q Consensus 64 ~~~~l~~aD~i--------iigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~ 118 (203)
.....++.|++ ..+-+.+.-.-|..+-.+|++.. -.+.||.+.+++-+.-
T Consensus 112 ~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~av~~ll~~~~-----i~l~Gk~vvViGrS~~ 169 (284)
T PRK14193 112 RIDPAKDADGLHPTNLGRLVLNEPAPLPCTPRGIVHLLRRYD-----VELAGAHVVVIGRGVT 169 (284)
T ss_pred cCCcccCccCCChhhhhHHhCCCCCCCCCCHHHHHHHHHHhC-----CCCCCCEEEEECCCCc
Confidence 12233456665 13444444444555556666543 2578999888876644
No 382
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=28.55 E-value=1.1e+02 Score=23.15 Aligned_cols=11 Identities=45% Similarity=0.757 Sum_probs=8.8
Q ss_pred hhhcCeeEEec
Q 028841 68 LAEADGFVFGF 78 (203)
Q Consensus 68 l~~aD~iiigs 78 (203)
+.++|+|||.-
T Consensus 38 l~~~D~lilPG 48 (198)
T cd03130 38 LPDADGLYLGG 48 (198)
T ss_pred CCCCCEEEECC
Confidence 45699999986
No 383
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.54 E-value=3.3e+02 Score=22.30 Aligned_cols=39 Identities=21% Similarity=0.136 Sum_probs=29.4
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
+..+|......-+..-++...+.+++ -|++++++++.+.
T Consensus 34 ~LaiI~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~ 72 (288)
T PRK14171 34 KLAIVLVGDNPASIIYVKNKIKNAHK-IGIDTLLVNLSTT 72 (288)
T ss_pred eEEEEEeCCCccHHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 55666665555667778888888888 7999999999764
No 384
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=28.52 E-value=2.2e+02 Score=25.13 Aligned_cols=38 Identities=5% Similarity=0.085 Sum_probs=24.0
Q ss_pred ceEEEEEc--CCcchHHHHH-HHHHHhcccCCCceEEEEEcC
Q 028841 3 TKVYIVYY--SMYGHVEKLA-EEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 3 ~kilii~~--S~~g~T~~la-~~i~~~~~~~~g~~v~~~~l~ 41 (203)
+|+++|+- |..|...++. +.+...+++ .|++++++.-.
T Consensus 112 kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~-~gi~~~v~~T~ 152 (481)
T PLN02958 112 KRLLVFVNPFGGKKSASKIFFDVVKPLLED-ADIQLTIQETK 152 (481)
T ss_pred cEEEEEEcCCCCCcchhHHHHHHHHHHHHH-cCCeEEEEecc
Confidence 57777764 4455555654 457767777 68887766443
No 385
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=28.47 E-value=2.2e+02 Score=20.56 Aligned_cols=32 Identities=9% Similarity=0.088 Sum_probs=21.0
Q ss_pred hhhhhhcCeeEEeccccCCccHHHHHHHHHHh
Q 028841 65 PNELAEADGFVFGFPTRFGMMAAQFKAFLDAT 96 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~ 96 (203)
...+..+|++|+..-.-...--..++.|++.+
T Consensus 67 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~ 98 (170)
T cd04108 67 STYYRGAQAIIIVFDLTDVASLEHTRQWLEDA 98 (170)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 34578999999997665433334456677654
No 386
>PRK06921 hypothetical protein; Provisional
Probab=28.29 E-value=93 Score=24.94 Aligned_cols=37 Identities=14% Similarity=0.113 Sum_probs=24.9
Q ss_pred eEEEEEcCC-cchHHHHHHHHHHhcccCC-CceEEEEEcCC
Q 028841 4 KVYIVYYSM-YGHVEKLAEEIKKGASSVE-GVEAKLWQVPE 42 (203)
Q Consensus 4 kilii~~S~-~g~T~~la~~i~~~~~~~~-g~~v~~~~l~~ 42 (203)
+-++++|.+ +|.|. ++.+|+..+.+ . |..+-.+...+
T Consensus 118 ~~l~l~G~~G~GKTh-La~aia~~l~~-~~g~~v~y~~~~~ 156 (266)
T PRK06921 118 NSIALLGQPGSGKTH-LLTAAANELMR-KKGVPVLYFPFVE 156 (266)
T ss_pred CeEEEECCCCCcHHH-HHHHHHHHHhh-hcCceEEEEEHHH
Confidence 346778864 78886 66777777665 4 77777776543
No 387
>PRK10126 tyrosine phosphatase; Provisional
Probab=28.13 E-value=1e+02 Score=22.09 Aligned_cols=27 Identities=15% Similarity=0.137 Sum_probs=18.4
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGAS 28 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~ 28 (203)
||+|||+|...+..- ..||+.+.+.+.
T Consensus 1 ~~~~iLFVC~gN~cR-SpmAEa~~~~~~ 27 (147)
T PRK10126 1 MFNNILVVCVGNICR-SPTAERLLQRYH 27 (147)
T ss_pred CCCeEEEEcCCcHhH-HHHHHHHHHHhc
Confidence 667888887654443 358888887664
No 388
>PRK08118 topology modulation protein; Reviewed
Probab=28.12 E-value=79 Score=23.24 Aligned_cols=27 Identities=15% Similarity=0.181 Sum_probs=19.2
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhccc
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASS 29 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~ 29 (203)
|+||+|+=.|..|.| .+|+.+.+.+.-
T Consensus 1 m~rI~I~G~~GsGKS-Tlak~L~~~l~~ 27 (167)
T PRK08118 1 MKKIILIGSGGSGKS-TLARQLGEKLNI 27 (167)
T ss_pred CcEEEEECCCCCCHH-HHHHHHHHHhCC
Confidence 347777655567877 589999888743
No 389
>cd06276 PBP1_FucR_like Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. FcuR acts as an inducer of fucRRIAK and as a corepressor of another locus that regulates production of fucosylated glycans. FcuR and its close homologs in this group are a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes t
Probab=28.08 E-value=1.6e+02 Score=22.71 Aligned_cols=36 Identities=6% Similarity=0.129 Sum_probs=27.1
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCC-ceEEEEEc
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEG-VEAKLWQV 40 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g-~~v~~~~l 40 (203)
+|+|+....+.....++..+.+.+.+ .| .++.+...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~i~~~l~~-~g~~~l~~~~~ 37 (247)
T cd06276 1 NILLLLNKLSSFKEIIYNSFVNTLGK-NAQVDLYFHHY 37 (247)
T ss_pred CEEEEEecCchHHHHHHHHHHHHHHh-cCcEEEEEEcC
Confidence 46777777777677799999999998 78 76665543
No 390
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=28.01 E-value=65 Score=25.30 Aligned_cols=29 Identities=10% Similarity=-0.237 Sum_probs=18.6
Q ss_pred hhhcCeeEEe---ccccCCccHHHHHHHHHHh
Q 028841 68 LAEADGFVFG---FPTRFGMMAAQFKAFLDAT 96 (203)
Q Consensus 68 l~~aD~iiig---sP~y~~~~~~~~k~~ld~~ 96 (203)
..+||+|++. .|.|...-...+..++.++
T Consensus 94 ~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f 125 (232)
T cd03148 94 DSEYAAVFIPGGHGALIGIPESQDVAAALQWA 125 (232)
T ss_pred hhhceEEEECCCCCChhhcccCHHHHHHHHHH
Confidence 4689999885 3455544445566666655
No 391
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=27.90 E-value=2.9e+02 Score=22.70 Aligned_cols=60 Identities=12% Similarity=0.124 Sum_probs=32.3
Q ss_pred HHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCC-CCChhhhhhcCeeEEeccccCCccHHHHHHHHHH
Q 028841 19 LAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVP-IITPNELAEADGFVFGFPTRFGMMAAQFKAFLDA 95 (203)
Q Consensus 19 la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~-~~~~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~ 95 (203)
+.+.+++.++. .|.+|-.+|-...... ..+. ....+.+.++|.|++..|.-- .-+.+|+.
T Consensus 156 IG~~vA~~~~~-fgm~V~~~d~~~~~~~-----------~~~~~~~l~ell~~sDvv~lh~Plt~-----~T~~li~~ 216 (311)
T PRK08410 156 IGKRVAKIAQA-FGAKVVYYSTSGKNKN-----------EEYERVSLEELLKTSDIISIHAPLNE-----KTKNLIAY 216 (311)
T ss_pred HHHHHHHHHhh-cCCEEEEECCCccccc-----------cCceeecHHHHhhcCCEEEEeCCCCc-----hhhcccCH
Confidence 45555555544 5777777664321100 0010 012456789999999998543 34555544
No 392
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.85 E-value=3.3e+02 Score=22.14 Aligned_cols=39 Identities=21% Similarity=0.166 Sum_probs=29.4
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
+..+|......-+..-++...+.+++ .|++++.+.+.+.
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~ 72 (278)
T PRK14172 34 KIASILVGNDGGSIYYMNNQEKVANS-LGIDFKKIKLDES 72 (278)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 55666666566666777777788888 7999999999764
No 393
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=27.83 E-value=2.2e+02 Score=19.99 Aligned_cols=46 Identities=7% Similarity=0.040 Sum_probs=31.3
Q ss_pred hhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 66 NELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..+.++|++|+....-...-...++.|+..+... ..+.++.++++-
T Consensus 71 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~-----~~~~p~ilv~nK 116 (164)
T cd04101 71 NYWESPSVFILVYDVSNKASFENCSRWVNKVRTA-----SKHMPGVLVGNK 116 (164)
T ss_pred HHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-----CCCCCEEEEEEC
Confidence 4578899999998776554455677787776421 245777777664
No 394
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=27.75 E-value=1.5e+02 Score=21.49 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=31.3
Q ss_pred ceEEEEEcCCc-chHHHHHHHHHHhcccCCCc---eEEEEEcCCC
Q 028841 3 TKVYIVYYSMY-GHVEKLAEEIKKGASSVEGV---EAKLWQVPET 43 (203)
Q Consensus 3 ~kilii~~S~~-g~T~~la~~i~~~~~~~~g~---~v~~~~l~~~ 43 (203)
.|++||.+.-+ -.+..+++...+.+.+ .|+ +++++.++..
T Consensus 4 ~ri~IV~s~~n~~i~~~ll~~a~~~l~~-~g~~~~~i~~~~VPGa 47 (144)
T PF00885_consen 4 LRIAIVVSRFNEEITDRLLEGALEELKR-HGVAEENIEVIRVPGA 47 (144)
T ss_dssp EEEEEEEESTTHHHHHHHHHHHHHHHHH-TTTTGGCEEEEEESSG
T ss_pred CEEEEEEEeccHHHHHHHHHHHHHHHHH-cCCCccceEEEEcCCH
Confidence 37888887755 4689999988888888 677 7888887654
No 395
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=27.66 E-value=1.3e+02 Score=22.49 Aligned_cols=64 Identities=17% Similarity=0.212 Sum_probs=29.4
Q ss_pred ceEEEE-EcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCC-CCCChhhhhhcCeeEEeccc
Q 028841 3 TKVYIV-YYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDV-PIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 3 ~kilii-~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~-~~~~~~~l~~aD~iiigsP~ 80 (203)
++|.|| |+|+ |.. .|..+ ++ .|++|.+-.-.+...-.... .+.+ +....+...++|.|++..|-
T Consensus 5 k~IAViGyGsQ-G~a--~AlNL----rD-SG~~V~Vglr~~s~s~~~A~------~~Gf~v~~~~eAv~~aDvV~~L~PD 70 (165)
T PF07991_consen 5 KTIAVIGYGSQ-GHA--HALNL----RD-SGVNVIVGLREGSASWEKAK------ADGFEVMSVAEAVKKADVVMLLLPD 70 (165)
T ss_dssp SEEEEES-SHH-HHH--HHHHH----HH-CC-EEEEEE-TTCHHHHHHH------HTT-ECCEHHHHHHC-SEEEE-S-H
T ss_pred CEEEEECCChH-HHH--HHHHH----Hh-CCCCEEEEecCCCcCHHHHH------HCCCeeccHHHHHhhCCEEEEeCCh
Confidence 577777 6664 432 23333 44 68887765544331100000 1122 11125678999999999884
No 396
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=27.41 E-value=1.1e+02 Score=24.07 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=26.5
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
||+++..+ .|........+.+.+.+ .|+++.++.....
T Consensus 1 kIl~i~~~-~~g~~~~~~~l~~~L~~-~g~~v~~~~~~~~ 38 (359)
T cd03808 1 KILHIVTV-DGGLYSFRLPLIKALRA-AGYEVHVVAPPGD 38 (359)
T ss_pred CeeEEEec-chhHHHHHHHHHHHHHh-cCCeeEEEecCCC
Confidence 67888777 44445556667777766 6889998876554
No 397
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=27.39 E-value=1.2e+02 Score=20.25 Aligned_cols=42 Identities=14% Similarity=0.056 Sum_probs=26.8
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCC
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETL 44 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~ 44 (203)
|-++|||.+. ...++..+++...+.+.. .+.++.++.+.+..
T Consensus 1 M~~~Ilv~~d-~~~~~~~al~~a~~la~~-~~~~i~~l~v~~~~ 42 (140)
T PF00582_consen 1 MYKRILVAID-GSEESRRALRFALELAKR-SGAEITLLHVIPPP 42 (140)
T ss_dssp -TSEEEEEES-SSHHHHHHHHHHHHHHHH-HTCEEEEEEEEESC
T ss_pred CCCEEEEEEC-CCHHHHHHHHHHHHHHHh-hCCeEEEEEeeccc
Confidence 4378888764 334455667766666655 56788888876653
No 398
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=27.27 E-value=92 Score=24.44 Aligned_cols=39 Identities=21% Similarity=0.340 Sum_probs=28.7
Q ss_pred eEEEEEcCC-cchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 4 KVYIVYYSM-YGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilii~~S~-~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
||+++..+. .|.....+..+.+.+.+ .|.++.++.....
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~-~g~~v~v~~~~~~ 40 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDK-RGYDVTLVVLRDE 40 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHh-cCceEEEEEcCCC
Confidence 578877764 55566777778888866 6899999877554
No 399
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=27.13 E-value=3.8e+02 Score=22.59 Aligned_cols=109 Identities=18% Similarity=0.228 Sum_probs=61.5
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHH-Hh---ccC-CCC---------C-CCCCCC----CC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEE-VL---GKM-SAP---------P-KSDVPI----IT 64 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~-~~---~~~-~~~---------~-~~d~~~----~~ 64 (203)
+..+|..+....+..-++...+.+++ .|++++++++.+.-.++ ++ ... ..+ | ..++.+ ..
T Consensus 88 ~LaiIlvGddpaS~~Yv~~k~K~a~~-~GI~~~~~~l~~~~te~ell~~I~~lN~D~~V~GIlVQlPLP~hid~~~i~~~ 166 (345)
T PLN02897 88 GLAVVLVGQQRDSQTYVRNKIKACEE-TGIKSLLAELPEDCTEGQILSALRKFNEDTSIHGILVQLPLPQHLDESKILNM 166 (345)
T ss_pred eEEEEEeCCChHHHHHHHHHHHHHHh-cCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhc
Confidence 45566655555566778888888888 79999999997653222 21 110 000 1 011100 01
Q ss_pred hhhhhhcCee--------EEe--ccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCC
Q 028841 65 PNELAEADGF--------VFG--FPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGS 118 (203)
Q Consensus 65 ~~~l~~aD~i--------iig--sP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~ 118 (203)
....++.|++ ..+ .|.+.-.-|..+-.+|++.. -.+.||.+.+++-+.-
T Consensus 167 I~p~KDVDGl~p~N~G~L~~~~~~~~~~PCTp~avi~LL~~~~-----i~l~GK~vvVIGRS~i 225 (345)
T PLN02897 167 VRLEKDVDGFHPLNVGNLAMRGREPLFVSCTPKGCVELLIRSG-----VEIAGKNAVVIGRSNI 225 (345)
T ss_pred cCcccCccCCCHHHHHHHhcCCCCCCCcCCCHHHHHHHHHHhC-----CCCCCCEEEEECCCcc
Confidence 2234566775 232 24444555555666666543 2589999998876543
No 400
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=27.10 E-value=3.4e+02 Score=21.94 Aligned_cols=62 Identities=15% Similarity=0.114 Sum_probs=32.5
Q ss_pred cCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCc
Q 028841 71 ADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYT 147 (203)
Q Consensus 71 aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~ 147 (203)
+|.||+..|.. ..++..++.+.. .++...+.+-.+...+ .. ...+.+.+...|..++..++.
T Consensus 60 ~dvvi~~v~~~-----~~~~~v~~~l~~-----~l~~g~ivid~st~~~----~~-~~~~~~~~~~~g~~~~dapvs 121 (301)
T PRK09599 60 PRVVWLMVPAG-----EITDATIDELAP-----LLSPGDIVIDGGNSYY----KD-DIRRAELLAEKGIHFVDVGTS 121 (301)
T ss_pred CCEEEEEecCC-----cHHHHHHHHHHh-----hCCCCCEEEeCCCCCh----hH-HHHHHHHHHHcCCEEEeCCCC
Confidence 69999998862 234444444421 1322232222222221 11 234567778889999876654
No 401
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=26.88 E-value=71 Score=22.01 Aligned_cols=66 Identities=20% Similarity=0.240 Sum_probs=37.3
Q ss_pred chHHHHHHHHHHhcccCCCceEEEEEcCCCCcH--HHhccCCCCCCCCCCCCChhhhhhcCeeEEecccc-CCccHHHHH
Q 028841 14 GHVEKLAEEIKKGASSVEGVEAKLWQVPETLPE--EVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR-FGMMAAQFK 90 (203)
Q Consensus 14 g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~--~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y-~~~~~~~~k 90 (203)
|++-..|...++.+++ .|+++++++++-..|- +.+ .+.+.+++.+++.---+ .|++-..+.
T Consensus 18 G~~~~~al~A~~~L~~-~Gi~~~vi~~~~i~P~d~~~l---------------~~~~~~~~~vvvvee~~~~gg~g~~i~ 81 (124)
T PF02780_consen 18 GSMVEEALEAAEELEE-EGIKAGVIDLRTIKPFDEEAL---------------LESLKKTGRVVVVEEHYKIGGLGSAIA 81 (124)
T ss_dssp TTHHHHHHHHHHHHHH-TTCEEEEEEEEEEESSBHHHH---------------HHHSHHHHHHHHSETCESEEEEHSSHH
T ss_pred hHHHHHHHHHHHHHHH-cCCceeEEeeEEEecccccch---------------HHHHHHhccccccccccccccHHHHHH
Confidence 3344556666677776 6999999998765431 111 12244455554433222 466666666
Q ss_pred HHHHH
Q 028841 91 AFLDA 95 (203)
Q Consensus 91 ~~ld~ 95 (203)
.++..
T Consensus 82 ~~l~~ 86 (124)
T PF02780_consen 82 EYLAE 86 (124)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66655
No 402
>PRK07024 short chain dehydrogenase; Provisional
Probab=26.79 E-value=77 Score=24.63 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=18.6
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
|+++++ |.|+..| |...+++.+.+ .|.++.+.+-.
T Consensus 1 ~~~~vl-ItGas~g----IG~~la~~l~~-~G~~v~~~~r~ 35 (257)
T PRK07024 1 MPLKVF-ITGASSG----IGQALAREYAR-QGATLGLVARR 35 (257)
T ss_pred CCCEEE-EEcCCcH----HHHHHHHHHHH-CCCEEEEEeCC
Confidence 554544 4554444 44444444444 57777776643
No 403
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.70 E-value=3.6e+02 Score=22.09 Aligned_cols=40 Identities=18% Similarity=0.129 Sum_probs=30.9
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
++..+|......-+..-++...+.+++ -|++++.+++.+.
T Consensus 27 P~LaiI~vg~d~as~~Yv~~k~k~~~~-~Gi~~~~~~l~~~ 66 (287)
T PRK14181 27 PGLAVVLIGNDPASEVYVGMKVKKATD-LGMVSKAHRLPSD 66 (287)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 356667666666677778888888888 7999999999765
No 404
>PRK08181 transposase; Validated
Probab=26.69 E-value=1.2e+02 Score=24.37 Aligned_cols=66 Identities=11% Similarity=0.100 Sum_probs=36.9
Q ss_pred EEEEEcCC-cchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEe
Q 028841 5 VYIVYYSM-YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFG 77 (203)
Q Consensus 5 ilii~~S~-~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiig 77 (203)
-++++|.+ +|.|. ++.++...+.+ .|..|.++...++- ..+..... .... ......+..+|.|||=
T Consensus 108 nlll~Gp~GtGKTH-La~Aia~~a~~-~g~~v~f~~~~~L~-~~l~~a~~---~~~~-~~~l~~l~~~dLLIID 174 (269)
T PRK08181 108 NLLLFGPPGGGKSH-LAAAIGLALIE-NGWRVLFTRTTDLV-QKLQVARR---ELQL-ESAIAKLDKFDLLILD 174 (269)
T ss_pred eEEEEecCCCcHHH-HHHHHHHHHHH-cCCceeeeeHHHHH-HHHHHHHh---CCcH-HHHHHHHhcCCEEEEe
Confidence 46777764 78886 67777776666 58788777764431 11100000 0000 0013467889999965
No 405
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.66 E-value=1.3e+02 Score=24.53 Aligned_cols=37 Identities=19% Similarity=-0.041 Sum_probs=28.1
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEE
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQ 39 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~ 39 (203)
|++|+|++-...-....+++.+.+-+.+ .|+++.+.+
T Consensus 5 ~~~i~iv~~~~~~~~~~~~~~i~~~l~~-~g~~v~~~~ 41 (292)
T PRK03378 5 FKCIGIVGHPRHPTALTTHEMLYHWLTS-KGYEVIVEQ 41 (292)
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHH-CCCEEEEec
Confidence 4579998877776778888888888877 687776543
No 406
>PRK13768 GTPase; Provisional
Probab=26.63 E-value=1.3e+02 Score=23.76 Aligned_cols=39 Identities=10% Similarity=0.191 Sum_probs=25.8
Q ss_pred CCceEEEEEcCC-cchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 1 MATKVYIVYYSM-YGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 1 Mm~kilii~~S~-~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
|| ++.+|.+.. .|.|- ++..++..+.. .|..+-++|+..
T Consensus 1 ~~-~~i~v~G~~G~GKTt-~~~~~~~~l~~-~g~~v~~i~~D~ 40 (253)
T PRK13768 1 MM-YIVFFLGTAGSGKTT-LTKALSDWLEE-QGYDVAIVNLDP 40 (253)
T ss_pred Cc-EEEEEECCCCccHHH-HHHHHHHHHHh-cCCceEEEECCC
Confidence 55 666666664 57764 45666666665 688888888754
No 407
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=26.52 E-value=1.8e+02 Score=24.46 Aligned_cols=67 Identities=12% Similarity=0.083 Sum_probs=37.0
Q ss_pred chHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEe-ccccCCccHHHHHHH
Q 028841 14 GHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFG-FPTRFGMMAAQFKAF 92 (203)
Q Consensus 14 g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiig-sP~y~~~~~~~~k~~ 92 (203)
|++-..+...++.+++ .|++++++++....|-+. +...+.+..++.||+. -..-.|++-..+..+
T Consensus 242 Gs~~~~aleAa~~L~~-~Gi~v~vI~~~~l~Pld~-------------e~i~~~~~~~~~IvvvEE~~~~GGlG~~Va~~ 307 (355)
T PTZ00182 242 GSQVHVALKAAEELAK-EGISCEVIDLRSLRPWDR-------------ETIVKSVKKTGRCVIVHEAPPTCGIGAEIAAQ 307 (355)
T ss_pred CHHHHHHHHHHHHHHh-CCCcEEEEEEeeCCCCCH-------------HHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHH
Confidence 4444555555666666 688999999887654110 0012345566666554 222245666666555
Q ss_pred HH
Q 028841 93 LD 94 (203)
Q Consensus 93 ld 94 (203)
+-
T Consensus 308 l~ 309 (355)
T PTZ00182 308 IM 309 (355)
T ss_pred HH
Confidence 53
No 408
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=26.31 E-value=1.6e+02 Score=20.15 Aligned_cols=35 Identities=11% Similarity=0.201 Sum_probs=22.0
Q ss_pred EEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCc
Q 028841 7 IVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLP 45 (203)
Q Consensus 7 ii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~ 45 (203)
.+|++++-.|-+=|....+. .|++++.+|+.+..+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~----~~i~~~~~di~~~p~ 36 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLED----KGIEPEVVKYLKNPP 36 (114)
T ss_pred EEEECCCCHHHHHHHHHHHH----CCCCeEEEeccCCCc
Confidence 47888765444434443333 477999999987654
No 409
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.24 E-value=3.6e+02 Score=21.99 Aligned_cols=108 Identities=15% Similarity=0.229 Sum_probs=59.7
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHH-Hhc---cCC-CC---------C-CCCCCC----CC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEE-VLG---KMS-AP---------P-KSDVPI----IT 64 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~-~~~---~~~-~~---------~-~~d~~~----~~ 64 (203)
+..+|......-+..-++...+.+++ .|++++.+++.+.-.++ +.+ ... .+ | ..++.+ ..
T Consensus 33 ~Laii~vgdd~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~~~~~~l~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~ 111 (281)
T PRK14183 33 GLAVILVGDDPASHTYVKMKAKACDR-VGIYSITHEMPSTISQKEILETIAMMNNNPNIDGILVQLPLPKHIDTTKILEA 111 (281)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCCCCHHHHHHHHHHHhCCCccCeEEEeCCCCCCCCHHHHHhc
Confidence 45566655555566777888888888 79999999987653222 211 110 00 1 011100 01
Q ss_pred hhhhhhcCee--------EEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecC
Q 028841 65 PNELAEADGF--------VFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTG 117 (203)
Q Consensus 65 ~~~l~~aD~i--------iigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g 117 (203)
....++.|++ ..+-|-|.-.-|..+-.+|++.. -.+.||.+.+++-+.
T Consensus 112 I~p~KDVDGl~~~n~g~l~~g~~~~~PcTp~avi~lL~~~~-----i~l~Gk~vvViGrS~ 167 (281)
T PRK14183 112 IDPKKDVDGFHPYNVGRLVTGLDGFVPCTPLGVMELLEEYE-----IDVKGKDVCVVGASN 167 (281)
T ss_pred cCchhcccccChhhhhHHhcCCCCCCCCcHHHHHHHHHHcC-----CCCCCCEEEEECCCC
Confidence 2233456665 23444444444555666666653 258999999887654
No 410
>PRK08084 DNA replication initiation factor; Provisional
Probab=26.11 E-value=1.5e+02 Score=23.05 Aligned_cols=37 Identities=11% Similarity=0.054 Sum_probs=25.8
Q ss_pred eEEEEEcCC-cchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 4 KVYIVYYSM-YGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilii~~S~-~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
..+++||.+ .|.|. ++..+...+.+ .|..+.++.+.+
T Consensus 46 ~~l~l~Gp~G~GKTh-Ll~a~~~~~~~-~~~~v~y~~~~~ 83 (235)
T PRK08084 46 GYIYLWSREGAGRSH-LLHAACAELSQ-RGRAVGYVPLDK 83 (235)
T ss_pred CeEEEECCCCCCHHH-HHHHHHHHHHh-CCCeEEEEEHHH
Confidence 357888864 78886 66677766665 577777777754
No 411
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=26.07 E-value=2.6e+02 Score=20.26 Aligned_cols=47 Identities=11% Similarity=0.065 Sum_probs=24.6
Q ss_pred hhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 67 ELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 67 ~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
-+..+|++|+..-.-.-.--...+.++..+. ......+.++.++++=
T Consensus 77 ~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~---~~~~~~~~piilv~NK 123 (175)
T smart00177 77 YYTNTQGLIFVVDSNDRDRIDEAREELHRML---NEDELRDAVILVFANK 123 (175)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHh---hCHhhcCCcEEEEEeC
Confidence 3689999999644332111122344444432 1112456788877763
No 412
>COG0680 HyaD Ni,Fe-hydrogenase maturation factor [Energy production and conversion]
Probab=26.04 E-value=2.7e+02 Score=20.50 Aligned_cols=69 Identities=17% Similarity=0.191 Sum_probs=49.7
Q ss_pred eEEEEE-cCC----cchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEec
Q 028841 4 KVYIVY-YSM----YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGF 78 (203)
Q Consensus 4 kilii~-~S~----~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigs 78 (203)
+++|+- |.. .|.--++|+.+++.... .. .++++|.....+. ....+..+|.+||.=
T Consensus 3 ~ilIlG~GN~L~~DDG~Gv~vae~L~~~~~~-~~-~v~vid~Gt~~~~-----------------l~~~l~~~d~vIIVD 63 (160)
T COG0680 3 RILILGVGNILMGDDGFGVRVAEKLKKRYKP-PE-NVEVIDGGTAGPN-----------------LLGLLAGYDPVIIVD 63 (160)
T ss_pred eEEEEeeCCcccccCcccHHHHHHHHHhcCC-CC-CeEEEEcCCCcHH-----------------HHHHhcCCCcEEEEE
Confidence 677774 442 57888999999988876 32 5888888765332 135788899999988
Q ss_pred cccCCccHHHHHH
Q 028841 79 PTRFGMMAAQFKA 91 (203)
Q Consensus 79 P~y~~~~~~~~k~ 91 (203)
-+-++.=|+.++.
T Consensus 64 av~~g~epG~v~~ 76 (160)
T COG0680 64 AVLFGLEPGEVRI 76 (160)
T ss_pred eeecCCCCceEEE
Confidence 8888877776553
No 413
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=25.93 E-value=1.4e+02 Score=22.58 Aligned_cols=34 Identities=26% Similarity=0.278 Sum_probs=23.0
Q ss_pred CceEEEEecCCC--CCChHHHHHHHHHHHHHcCcEE
Q 028841 108 KPAGMFYSTGSQ--GGGQETTALTAITQLVHHGMIF 141 (203)
Q Consensus 108 K~~~~~~t~g~~--~~~~~~~~~~l~~~l~~~g~~~ 141 (203)
|++++++|-|-+ .||.++-+++|...+...|..+
T Consensus 2 kkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v 37 (185)
T PF09314_consen 2 KKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDV 37 (185)
T ss_pred ceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceE
Confidence 567788876543 4677776777777776666554
No 414
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=25.88 E-value=1.1e+02 Score=20.81 Aligned_cols=34 Identities=15% Similarity=0.254 Sum_probs=23.1
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEE
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLW 38 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~ 38 (203)
++-++|..|.+|+|..+.+.+... ++ .|+.+-.+
T Consensus 43 ~~dl~I~iS~SG~t~e~i~~~~~a-~~-~g~~iI~I 76 (119)
T cd05017 43 RKTLVIAVSYSGNTEETLSAVEQA-KE-RGAKIVAI 76 (119)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHH-HH-CCCEEEEE
Confidence 345777889999999888887554 44 46554443
No 415
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=25.85 E-value=84 Score=25.02 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=29.1
Q ss_pred eEEEEEcCC---cchHHHHHHHHHHhcccCCCceEEEEEcCCCC
Q 028841 4 KVYIVYYSM---YGHVEKLAEEIKKGASSVEGVEAKLWQVPETL 44 (203)
Q Consensus 4 kilii~~S~---~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~ 44 (203)
||++|..+. .|-....+..+++.+.+ .|+++.++......
T Consensus 1 kIl~i~~~~~~~~gG~~~~~~~l~~~L~~-~g~~v~v~~~~~~~ 43 (375)
T cd03821 1 KILHVIPSFDPKYGGPVRVVLNLSKALAK-LGHEVTVATTDAGG 43 (375)
T ss_pred CeEEEcCCCCcccCCeehHHHHHHHHHHh-cCCcEEEEecCCCC
Confidence 577777663 45566777777888877 79999998876543
No 416
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=25.84 E-value=74 Score=23.27 Aligned_cols=42 Identities=17% Similarity=0.058 Sum_probs=24.9
Q ss_pred hhhcCeeEEeccc---cCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 68 LAEADGFVFGFPT---RFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 68 l~~aD~iiigsP~---y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..++|.|++.... +.....+.+..||.+.. -++|+++.++++
T Consensus 61 ~~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~-------~~~~~i~~ic~G 105 (179)
T TIGR01383 61 LEEFDAIVLPGGMPGAENLRNSKLLLNILKKQE-------SKGKLVAAICAA 105 (179)
T ss_pred cccCCEEEECCCchHHHHHhhCHHHHHHHHHHH-------HCCCEEEEEChh
Confidence 5678999886532 11122345667776653 367777776654
No 417
>PRK13265 glycine/sarcosine/betaine reductase complex protein A; Reviewed
Probab=25.73 E-value=2.6e+02 Score=20.23 Aligned_cols=62 Identities=10% Similarity=-0.065 Sum_probs=37.3
Q ss_pred CCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccCCCCCccceecCCCCCCCCHHHHH
Q 028841 104 QLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELE 183 (203)
Q Consensus 104 ~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 183 (203)
.|+||++.+++--++..|.. +...+...|..++-....| | .. ......|-++.+
T Consensus 3 ~l~gKkviiiGdRDGiPgpA------ie~c~k~~gaevvfs~TEC-f--------Vc-----------taAGAMDLEnQ~ 56 (154)
T PRK13265 3 LLEGKKVIIIGDRDGIPGPA------IEECVKTTGAEVVFSSTEC-F--------VU-----------TAAGAMDLENQK 56 (154)
T ss_pred cccCcEEEEEecCCCCCcHH------HHHHHhccCceEEEEeeeE-E--------Ee-----------ecccccchHHHH
Confidence 47899999998776654432 3356666788887544332 1 11 111356667777
Q ss_pred HHHHHHHH
Q 028841 184 QAFHQGKH 191 (203)
Q Consensus 184 ~~~~~g~~ 191 (203)
+..+++++
T Consensus 57 Rvk~~aEk 64 (154)
T PRK13265 57 RVKDLAEK 64 (154)
T ss_pred HHHHHHHh
Confidence 77766654
No 418
>PF09960 DUF2194: Uncharacterized protein conserved in bacteria (DUF2194); InterPro: IPR018695 This family of prokaryotic proteins has no known function; however it may be a membrane protein.
Probab=25.73 E-value=2.5e+02 Score=25.53 Aligned_cols=74 Identities=14% Similarity=0.107 Sum_probs=46.3
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFG 83 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~ 83 (203)
+++++|-+..-.+..+.+.+.+.+.. .-..++.+|+.+..-. ....+..++.|||.++-...
T Consensus 55 ~l~~l~d~~~~~s~~~~~n~~kil~~-~K~~~~~id~~~~~~~-----------------~~p~l~~Y~~vII~~~~l~~ 116 (585)
T PF09960_consen 55 KLLILYDSNGELSMDIKENFKKILEY-MKIPYDTIDIAEFIKS-----------------SIPSLSDYRGVIILTTDLDP 116 (585)
T ss_pred eEEEEECCCChHHHHHHHHHHHHHHH-hccccEeeeccccccc-----------------cCCcccceeEEEEEeccccc
Confidence 45567777666677788888888776 4456777777643100 12356788888887766643
Q ss_pred ccHHHHHHHHHH
Q 028841 84 MMAAQFKAFLDA 95 (203)
Q Consensus 84 ~~~~~~k~~ld~ 95 (203)
=-...+++|+..
T Consensus 117 l~~~~i~~yV~~ 128 (585)
T PF09960_consen 117 LGNEAIMNYVEN 128 (585)
T ss_pred cChHHHHHHHHc
Confidence 323666666654
No 419
>PLN02735 carbamoyl-phosphate synthase
Probab=25.72 E-value=6.6e+02 Score=24.91 Aligned_cols=40 Identities=20% Similarity=0.179 Sum_probs=25.3
Q ss_pred CceEEEEEcCCc--chH---HHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 2 ATKVYIVYYSMY--GHV---EKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 2 m~kilii~~S~~--g~T---~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
++||||+-+.+. |.. ..-...+.+.+++ .|++|.++|...
T Consensus 23 ~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke-~G~~Vi~vd~np 67 (1102)
T PLN02735 23 LKKIMILGAGPIVIGQACEFDYSGTQACKALKE-EGYEVVLINSNP 67 (1102)
T ss_pred CCEEEEECCCccccccceeecchHHHHHHHHHH-cCCEEEEEeCCc
Confidence 468888876652 321 1224455666666 699999888654
No 420
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=25.41 E-value=3.6e+02 Score=21.74 Aligned_cols=121 Identities=11% Similarity=0.156 Sum_probs=58.2
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccC
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRF 82 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~ 82 (203)
+||.+| +. | .|...++..+.+ .|.++.++|......+..... ......+ ..+.+.++|.||+..|...
T Consensus 2 ~~Ig~I-Gl--G---~mG~~mA~~l~~-~G~~V~v~d~~~~~~~~~~~~-g~~~~~s----~~~~~~~aDvVi~~vp~~~ 69 (296)
T PRK15461 2 AAIAFI-GL--G---QMGSPMASNLLK-QGHQLQVFDVNPQAVDALVDK-GATPAAS----PAQAAAGAEFVITMLPNGD 69 (296)
T ss_pred CeEEEE-ee--C---HHHHHHHHHHHH-CCCeEEEEcCCHHHHHHHHHc-CCcccCC----HHHHHhcCCEEEEecCCHH
Confidence 377665 32 2 233334444444 577888887654322222111 1101111 1345788999999998652
Q ss_pred CccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCc
Q 028841 83 GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYT 147 (203)
Q Consensus 83 ~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~ 147 (203)
.++..+........ ...+|+.+ ...+.. ... ...++.+.+...|..++..++.
T Consensus 70 -----~~~~vl~~~~~i~~-~l~~g~lv---id~sT~--~p~-~~~~l~~~l~~~g~~~ldapV~ 122 (296)
T PRK15461 70 -----LVRSVLFGENGVCE-GLSRDALV---IDMSTI--HPL-QTDKLIADMQAKGFSMMDVPVG 122 (296)
T ss_pred -----HHHHHHcCcccHhh-cCCCCCEE---EECCCC--CHH-HHHHHHHHHHHcCCcEEEccCC
Confidence 34444432111100 01134333 222111 111 2355777888888888876654
No 421
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=25.40 E-value=1.7e+02 Score=19.89 Aligned_cols=34 Identities=15% Similarity=0.256 Sum_probs=21.7
Q ss_pred EEEcCCcc-hHHHHHHHHHHhcccCCCceEEEEEcCCCCc
Q 028841 7 IVYYSMYG-HVEKLAEEIKKGASSVEGVEAKLWQVPETLP 45 (203)
Q Consensus 7 ii~~S~~g-~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~ 45 (203)
.||++++- .+++..+.+.+ .|++++.+|+.+..+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~-----~~i~~~~~di~~~~~ 36 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEE-----AGIEPEIVEYLKTPP 36 (112)
T ss_pred EEEECCCCHHHHHHHHHHHH-----CCCCeEEEecccCCc
Confidence 46887654 44544434333 577899999987654
No 422
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=25.38 E-value=1.6e+02 Score=22.47 Aligned_cols=38 Identities=16% Similarity=0.282 Sum_probs=26.1
Q ss_pred eEEEEEcCC-cchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 4 KVYIVYYSM-YGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilii~~S~-~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
+.++++|.+ +|.|. +|..+...+.. .|..+.+++..+.
T Consensus 43 ~~~~l~G~~G~GKT~-La~ai~~~~~~-~~~~~~~i~~~~~ 81 (227)
T PRK08903 43 RFFYLWGEAGSGRSH-LLQALVADASY-GGRNARYLDAASP 81 (227)
T ss_pred CeEEEECCCCCCHHH-HHHHHHHHHHh-CCCcEEEEehHHh
Confidence 357788865 78885 67777776655 4667777776543
No 423
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=25.32 E-value=93 Score=22.96 Aligned_cols=43 Identities=12% Similarity=0.009 Sum_probs=24.9
Q ss_pred hhhhcCeeEEec-cccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 67 ELAEADGFVFGF-PTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 67 ~l~~aD~iiigs-P~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...++|.||+.. +.......+.+..|+.+.. -++|.++.++++
T Consensus 61 ~~~~~D~liipgg~~~~~~~~~~~~~~l~~~~-------~~~~~i~aic~g 104 (185)
T cd03136 61 DAPPLDYLFVVGGLGARRAVTPALLAWLRRAA-------RRGVALGGIDTG 104 (185)
T ss_pred ccCCCCEEEEeCCCCccccCCHHHHHHHHHHH-------hcCCEEEEEcHH
Confidence 456789998842 1111333455666666652 357777766654
No 424
>PRK10853 putative reductase; Provisional
Probab=25.28 E-value=1.8e+02 Score=20.14 Aligned_cols=35 Identities=9% Similarity=0.083 Sum_probs=22.8
Q ss_pred EEEEcCCcc-hHHHHHHHHHHhcccCCCceEEEEEcCCCCc
Q 028841 6 YIVYYSMYG-HVEKLAEEIKKGASSVEGVEAKLWQVPETLP 45 (203)
Q Consensus 6 lii~~S~~g-~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~ 45 (203)
+.||+.++- .+++..+.+.+ .|++++++|+.+..+
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~-----~~i~~~~~d~~k~p~ 37 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEA-----QGIDYRFHDYRVDGL 37 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHH-----cCCCcEEeehccCCc
Confidence 457888764 45554444433 578999999987543
No 425
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=25.07 E-value=1.2e+02 Score=24.12 Aligned_cols=39 Identities=18% Similarity=0.285 Sum_probs=28.7
Q ss_pred eEEEEEcC--C--cchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 4 KVYIVYYS--M--YGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilii~~S--~--~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
||+++..+ + .|-.+..+..+++.+.+ .|++|.++.....
T Consensus 1 kIl~i~~~~~~~~~gG~~~~~~~l~~~L~~-~g~~v~v~~~~~~ 43 (359)
T cd03823 1 RILVVNHLYPPRSVGGAEVVAHDLAEALAK-RGHEVAVLTAGED 43 (359)
T ss_pred CeeEEcccCCcccccchHHHHHHHHHHHHh-cCCceEEEeCCCC
Confidence 57777543 2 35577788888888887 6999999987654
No 426
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=25.07 E-value=43 Score=23.88 Aligned_cols=43 Identities=14% Similarity=0.145 Sum_probs=27.1
Q ss_pred hhhhcCeeEEecc-ccCCcc---HHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 67 ELAEADGFVFGFP-TRFGMM---AAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 67 ~l~~aD~iiigsP-~y~~~~---~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+||+||+.-- -+...+ ++.+..|+.... -.+|+++.++.+
T Consensus 34 ~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~-------~~~k~iaaIC~g 80 (147)
T PF01965_consen 34 DPSDYDALILPGGHGGADDLRTDSKDLLELLKEFY-------EAGKPIAAICHG 80 (147)
T ss_dssp TGGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHH-------HTT-EEEEETTC
T ss_pred ChhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHH-------HcCCeEEecCCC
Confidence 3457999977533 222333 378888888874 358888888764
No 427
>KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism]
Probab=24.83 E-value=90 Score=25.37 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=15.7
Q ss_pred CCceEEEEEcCCcchHHHHHHHH
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEI 23 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i 23 (203)
||.|+.+|.|+..|---.++..+
T Consensus 1 ~~RKvalITGanSglGl~i~~RL 23 (341)
T KOG1478|consen 1 MMRKVALITGANSGLGLAICKRL 23 (341)
T ss_pred CCceEEEEecCCCcccHHHHHHH
Confidence 78899999998766444444443
No 428
>PRK10342 glycerate kinase I; Provisional
Probab=24.82 E-value=1.5e+02 Score=25.41 Aligned_cols=40 Identities=20% Similarity=0.197 Sum_probs=30.0
Q ss_pred eEEEEEcCCcc--hHHHHHHHHHHhcccC-CCceEEEEEcCCC
Q 028841 4 KVYIVYYSMYG--HVEKLAEEIKKGASSV-EGVEAKLWQVPET 43 (203)
Q Consensus 4 kilii~~S~~g--~T~~la~~i~~~~~~~-~g~~v~~~~l~~~ 43 (203)
||+|.--|-.| ....+++.|++++.+. ...++..+.+.|-
T Consensus 2 kiliApDsFKGsLsA~eaa~ai~~G~~~~~p~~~v~~~P~ADG 44 (381)
T PRK10342 2 KIVIAPDSYKESLSASEVAQAIEKGFREIFPDAQYVSVPVADG 44 (381)
T ss_pred cEEEEecCCCCccCHHHHHHHHHHHHHHhCCCCeEEEeecCCC
Confidence 89998888665 4778899999999874 4556666666653
No 429
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=24.82 E-value=1.9e+02 Score=18.30 Aligned_cols=38 Identities=13% Similarity=0.142 Sum_probs=25.1
Q ss_pred EEEEc-CCcchHHHHHHHHHHhcccC--CCceEEEEEcCCC
Q 028841 6 YIVYY-SMYGHVEKLAEEIKKGASSV--EGVEAKLWQVPET 43 (203)
Q Consensus 6 lii~~-S~~g~T~~la~~i~~~~~~~--~g~~v~~~~l~~~ 43 (203)
|-+|- +.+-+++...+.+.+.+++. ..++.+++|+.+-
T Consensus 4 L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~ 44 (72)
T cd02978 4 LRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQ 44 (72)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccC
Confidence 34444 44567777777777766653 3567889998764
No 430
>PRK12361 hypothetical protein; Provisional
Probab=24.72 E-value=3.3e+02 Score=24.31 Aligned_cols=38 Identities=8% Similarity=0.148 Sum_probs=25.2
Q ss_pred CceEEEEEcC--CcchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 2 ATKVYIVYYS--MYGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 2 m~kilii~~S--~~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
++++++|+-. ..|...+..+.+.+.+.+ +.+++++...
T Consensus 242 ~~~~~iI~NP~SG~g~~~~~~~~i~~~L~~--~~~~~v~~t~ 281 (547)
T PRK12361 242 HKRAWLIANPVSGGGKWQEYGEQIQRELKA--YFDLTVKLTT 281 (547)
T ss_pred CCceEEEECCCCCCCcHHHHHHHHHHHHhc--CCceEEEECC
Confidence 4577776644 455677888898888876 3566655543
No 431
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=24.70 E-value=1.8e+02 Score=19.89 Aligned_cols=35 Identities=11% Similarity=0.176 Sum_probs=22.8
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
|||+|..+.......+++ .+.+ .|.+|.++...+.
T Consensus 1 KIl~i~~~~~~~~~~~~~----~L~~-~g~~V~ii~~~~~ 35 (139)
T PF13477_consen 1 KILLIGNTPSTFIYNLAK----ELKK-RGYDVHIITPRND 35 (139)
T ss_pred CEEEEecCcHHHHHHHHH----HHHH-CCCEEEEEEcCCC
Confidence 577777666555444444 4444 5889999988554
No 432
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=24.64 E-value=4e+02 Score=21.96 Aligned_cols=109 Identities=17% Similarity=0.251 Sum_probs=60.1
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCc-HHHhc---cC-CCC---------C-CCCCCC--C--C
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLP-EEVLG---KM-SAP---------P-KSDVPI--I--T 64 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~-~~~~~---~~-~~~---------~-~~d~~~--~--~ 64 (203)
+..+|....+..+..-++...+.+++ -|++++.+++.+.-. +++.. .. ..+ | ..++.+ . .
T Consensus 41 ~LaiI~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvq~PlP~~id~~~i~~~ 119 (299)
T PLN02516 41 GLAVVIVGSRKDSQTYVNMKRKACAE-VGIKSFDVDLPENISEAELISKVHELNANPDVHGILVQLPLPKHINEEKILNE 119 (299)
T ss_pred eEEEEEECCChhHHHHHHHHHHHHHH-cCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCcCHHHHHhc
Confidence 56666666566667778888888888 699999999975422 22221 10 000 1 001100 0 1
Q ss_pred hhhhhhcCee-------EE-e--ccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCC
Q 028841 65 PNELAEADGF-------VF-G--FPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGS 118 (203)
Q Consensus 65 ~~~l~~aD~i-------ii-g--sP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~ 118 (203)
....++.|++ ++ + .+.|.-.-|..+-.+|++.. -.+.||.+.+++.+.-
T Consensus 120 I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~avi~lL~~~~-----i~l~Gk~vvVIGRS~i 178 (299)
T PLN02516 120 ISLEKDVDGFHPLNIGKLAMKGREPLFLPCTPKGCLELLSRSG-----IPIKGKKAVVVGRSNI 178 (299)
T ss_pred cCcccccCccCHhhHhhHhcCCCCCCCCCCCHHHHHHHHHHhC-----CCCCCCEEEEECCCcc
Confidence 2233566766 11 2 34344444555666666543 2588999998876543
No 433
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=24.57 E-value=2.3e+02 Score=20.97 Aligned_cols=38 Identities=11% Similarity=0.243 Sum_probs=27.3
Q ss_pred eEEEEEcCCc-chHHHHHHHHHHhcccCCCc---eEEEEEcCC
Q 028841 4 KVYIVYYSMY-GHVEKLAEEIKKGASSVEGV---EAKLWQVPE 42 (203)
Q Consensus 4 kilii~~S~~-g~T~~la~~i~~~~~~~~g~---~v~~~~l~~ 42 (203)
|++||.+--+ --|..|.+-..+.+.+ .|+ +++++.++-
T Consensus 12 riaIV~srfn~~It~~Ll~gA~~~l~~-~G~~~~~i~v~~VPG 53 (158)
T PRK12419 12 RIAFIQARWHADIVDQARKGFVAEIAA-RGGAASQVDIFDVPG 53 (158)
T ss_pred EEEEEEecCCHHHHHHHHHHHHHHHHH-cCCCccceEEEECCc
Confidence 7888776654 4588999988888887 674 366666644
No 434
>PF13587 DJ-1_PfpI_N: N-terminal domain of DJ-1_PfpI family; PDB: 1U9C_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A.
Probab=24.52 E-value=57 Score=17.79 Aligned_cols=10 Identities=40% Similarity=0.391 Sum_probs=5.5
Q ss_pred ceEEEEEcCC
Q 028841 3 TKVYIVYYSM 12 (203)
Q Consensus 3 ~kilii~~S~ 12 (203)
||||||..|.
T Consensus 1 kkiLiV~Ts~ 10 (38)
T PF13587_consen 1 KKILIVVTSH 10 (38)
T ss_dssp SEEEEEE---
T ss_pred CeEEEEEcCc
Confidence 4888888773
No 435
>PRK07023 short chain dehydrogenase; Provisional
Probab=24.28 E-value=78 Score=24.28 Aligned_cols=33 Identities=15% Similarity=0.072 Sum_probs=17.4
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQV 40 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l 40 (203)
|| +++| .|...|--..+++.+ .+ .|.++.+++.
T Consensus 1 ~~-~vlI-tGasggiG~~ia~~l----~~-~G~~v~~~~r 33 (243)
T PRK07023 1 AV-RAIV-TGHSRGLGAALAEQL----LQ-PGIAVLGVAR 33 (243)
T ss_pred Cc-eEEE-ecCCcchHHHHHHHH----Hh-CCCEEEEEec
Confidence 55 6665 444344444444444 44 5777766654
No 436
>PLN02808 alpha-galactosidase
Probab=24.19 E-value=3.4e+02 Score=23.24 Aligned_cols=65 Identities=14% Similarity=0.247 Sum_probs=37.9
Q ss_pred hhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCC------CCCChHHHHHHHHHHHHHcCcEEe
Q 028841 69 AEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGS------QGGGQETTALTAITQLVHHGMIFV 142 (203)
Q Consensus 69 ~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~------~~~~~~~~~~~l~~~l~~~g~~~v 142 (203)
++.++-++.-|. .+|.-||.+.|++. -+|-++++....|. ..|.... .....+.+..+|+.++
T Consensus 82 rd~~G~~~~d~~---rFP~G~~~lad~iH-------~~GlkfGiy~~~G~~tC~~~~pGs~~~-e~~DA~~fA~WGvDyl 150 (386)
T PLN02808 82 RDSQGNLVPKAS---TFPSGIKALADYVH-------SKGLKLGIYSDAGTLTCSKTMPGSLGH-EEQDAKTFASWGIDYL 150 (386)
T ss_pred cCCCCCEeeChh---hcCccHHHHHHHHH-------HCCCceEEEecCCccccCCCCCcchHH-HHHHHHHHHHhCCCEE
Confidence 344555555554 45556899999984 36888888875432 1233222 2334456677777776
Q ss_pred cC
Q 028841 143 PI 144 (203)
Q Consensus 143 ~~ 144 (203)
=.
T Consensus 151 K~ 152 (386)
T PLN02808 151 KY 152 (386)
T ss_pred ee
Confidence 43
No 437
>PF00496 SBP_bac_5: Bacterial extracellular solute-binding proteins, family 5 Middle; InterPro: IPR000914 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into Gram-positive bacteria which are surrounded by a single membrane and therefore have no periplasmic region the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families of clusters, which generally correlate with the nature of the solute bound. Family 5 currently includes periplasmic oligopeptide-binding proteins (oppA) of Gram-negative bacteria and homologous lipoproteins in Gram-positive bacteria (oppA, amiA or appA); periplasmic dipeptide-binding proteins of Escherichia coli (dppA) and Bacillus subtilis (dppE); periplasmic murein peptide-binding protein of E. coli (mppA); periplasmic peptide-binding proteins sapA of E. coli, Salmonella typhimurium and Haemophilus influenzae; periplasmic nickel-binding protein (nikA) of E. coli; haem-binding lipoprotein (hbpA or dppA) from H. influenzae; lipoprotein xP55 from Streptomyces lividans; and hypothetical proteins from H. influenzae (HI0213) and Rhizobium sp. (strain NGR234) symbiotic plasmid (y4tO and y4wM).; GO: 0005215 transporter activity, 0006810 transport; PDB: 1B51_A 1B0H_A 1QKA_A 1B9J_A 1B6H_A 1OLA_A 1B3L_C 1JEV_A 1B5H_A 1JET_A ....
Probab=24.17 E-value=2.4e+02 Score=23.07 Aligned_cols=71 Identities=14% Similarity=0.119 Sum_probs=43.7
Q ss_pred EEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCCc
Q 028841 5 VYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGM 84 (203)
Q Consensus 5 ilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~~ 84 (203)
+++++.+.+.....+++.+++.+++ .|+++++..+.... ... ....-.++|..+.+.--....
T Consensus 296 ~~~~~~~~~~~~~~~a~~l~~~l~~-~Gi~v~i~~~~~~~---~~~-------------~~~~~~~~d~~~~~~~~~~~~ 358 (374)
T PF00496_consen 296 LIILYTSDDPIWKAIAEALQEQLKK-IGIKVEIKPVDFND---TYD-------------KRLRAGDFDMALSGWSGDYPD 358 (374)
T ss_dssp EEEEEETTSHHHHHHHHHHHHHHHH-TTEEEEEEEESHHH---HHH-------------HHHHCTSESEEEEEEESSSSS
T ss_pred ccccccccccchHHHHHHHHHHHhh-cceeEEEEEeChHH---HHH-------------HHhhCCCcCEEEEecCCCCCC
Confidence 4555666666677899999999999 79999988774301 000 012335778887764444444
Q ss_pred cHHHHHHH
Q 028841 85 MAAQFKAF 92 (203)
Q Consensus 85 ~~~~~k~~ 92 (203)
++..+..|
T Consensus 359 ~~~~~~~~ 366 (374)
T PF00496_consen 359 PYSFLYPF 366 (374)
T ss_dssp THHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 438
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=24.15 E-value=3.3e+02 Score=20.81 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=12.9
Q ss_pred ceEEEEEcCCcchHHHHHHHHH
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIK 24 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~ 24 (203)
.+|+|+... .-.+..+++.+.
T Consensus 2 ~~ilIld~g-~q~~~li~r~~r 22 (198)
T COG0518 2 RKILILDFG-GQYLGLIARRLR 22 (198)
T ss_pred cEEEEEeCC-CcHhHHHHHHHH
Confidence 478887543 133666777776
No 439
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=24.11 E-value=87 Score=22.07 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=15.1
Q ss_pred hhhhhcCeeEEeccccCCccH
Q 028841 66 NELAEADGFVFGFPTRFGMMA 86 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~ 86 (203)
+.+.++|.||-+||.=..-++
T Consensus 71 ~~~~~~DivI~aT~~~~~~i~ 91 (135)
T PF01488_consen 71 EALQEADIVINATPSGMPIIT 91 (135)
T ss_dssp HHHHTESEEEE-SSTTSTSST
T ss_pred HHHhhCCeEEEecCCCCcccC
Confidence 467899999999997666433
No 440
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=24.09 E-value=69 Score=21.39 Aligned_cols=41 Identities=22% Similarity=0.186 Sum_probs=24.6
Q ss_pred HHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEE
Q 028841 88 QFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIF 141 (203)
Q Consensus 88 ~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~ 141 (203)
--..+|+++. -.||++.+++..... . ...+.+.|...|+.+
T Consensus 18 ga~e~l~~L~-------~~g~~~~~lTNns~~--s----~~~~~~~L~~~Gi~~ 58 (101)
T PF13344_consen 18 GAVEALDALR-------ERGKPVVFLTNNSSR--S----REEYAKKLKKLGIPV 58 (101)
T ss_dssp THHHHHHHHH-------HTTSEEEEEES-SSS-------HHHHHHHHHHTTTT-
T ss_pred CHHHHHHHHH-------HcCCCEEEEeCCCCC--C----HHHHHHHHHhcCcCC
Confidence 3478888884 368998877765332 1 123566777776554
No 441
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=23.78 E-value=3.6e+02 Score=21.16 Aligned_cols=34 Identities=18% Similarity=0.065 Sum_probs=24.3
Q ss_pred eEEEEEcCC-cchHHHHHHHHHHhcccCCCceEEEE
Q 028841 4 KVYIVYYSM-YGHVEKLAEEIKKGASSVEGVEAKLW 38 (203)
Q Consensus 4 kilii~~S~-~g~T~~la~~i~~~~~~~~g~~v~~~ 38 (203)
||.+|..+. +.....+.+.+.+.+.+ .|.++.++
T Consensus 1 ~i~~i~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~ 35 (294)
T cd06316 1 KAAIVMHTSGSDWSNAQVRGAKDEFAK-LGIEVVAT 35 (294)
T ss_pred CeEEEecCCCChHHHHHHHHHHHHHHH-cCCEEEEe
Confidence 577776553 45667788899888888 68777643
No 442
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=23.69 E-value=2.7e+02 Score=25.69 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=18.5
Q ss_pred hhhhhcCeeEEeccccCCccHHHHHHHHHHhc
Q 028841 66 NELAEADGFVFGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~ 97 (203)
..+..+|.|||.||. .++.|++++.
T Consensus 51 ~~L~~yd~iIFTS~n-------AV~~~~~~l~ 75 (656)
T PRK06975 51 ARLSDYALVVFVSPN-------AVDRALARLD 75 (656)
T ss_pred HhCCCCCEEEEECHH-------HHHHHHHHHH
Confidence 467899999999974 5666666654
No 443
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=23.65 E-value=1.5e+02 Score=23.67 Aligned_cols=40 Identities=18% Similarity=0.096 Sum_probs=27.9
Q ss_pred hhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEE
Q 028841 69 AEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFY 114 (203)
Q Consensus 69 ~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~ 114 (203)
..+|+|++..|.|+..-...+..|+..+.. -.+.++.++-
T Consensus 94 ~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~------~~~~pi~lYn 133 (284)
T cd00950 94 AGADAALVVTPYYNKPSQEGLYAHFKAIAE------ATDLPVILYN 133 (284)
T ss_pred cCCCEEEEcccccCCCCHHHHHHHHHHHHh------cCCCCEEEEE
Confidence 378999999999886666777777777642 1355555553
No 444
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=23.60 E-value=2e+02 Score=21.53 Aligned_cols=36 Identities=14% Similarity=0.195 Sum_probs=21.1
Q ss_pred CceEEEEEc-CCcchHHHHHHHHHHhcccCCCceEEEEE
Q 028841 2 ATKVYIVYY-SMYGHVEKLAEEIKKGASSVEGVEAKLWQ 39 (203)
Q Consensus 2 m~kilii~~-S~~g~T~~la~~i~~~~~~~~g~~v~~~~ 39 (203)
|..++.|.| |..|.|- +++.+...+.. .|..+-.+.
T Consensus 5 ~~~ii~ivG~sgsGKTT-Li~~li~~l~~-~g~~vg~Ik 41 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTT-LLKKLIPALCA-RGIRPGLIK 41 (173)
T ss_pred CceEEEEECCCCChHHH-HHHHHHHHHhh-cCCeEEEEE
Confidence 345666666 6788874 45555555555 465554443
No 445
>COG2222 AgaS Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]
Probab=23.58 E-value=2.1e+02 Score=23.99 Aligned_cols=29 Identities=14% Similarity=0.188 Sum_probs=20.9
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCce
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVE 34 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~ 34 (203)
+.++|..|++|||..++..+ +.+++ .|..
T Consensus 88 ~~lvi~~S~SG~TpE~vaa~-~~a~~-~ga~ 116 (340)
T COG2222 88 DSLVIAFSQSGNTPESVAAA-ELAKE-GGAL 116 (340)
T ss_pred CeEEEEEeCCCCCHHHHHHH-HHhcc-CCCe
Confidence 46888999999988888776 44444 4554
No 446
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=23.57 E-value=1.8e+02 Score=23.22 Aligned_cols=16 Identities=13% Similarity=0.189 Sum_probs=11.4
Q ss_pred hhhhh-cCeeEEecccc
Q 028841 66 NELAE-ADGFVFGFPTR 81 (203)
Q Consensus 66 ~~l~~-aD~iiigsP~y 81 (203)
.-+.. .|.|++|+=..
T Consensus 171 ~~m~~~vd~VliGad~v 187 (282)
T PF01008_consen 171 YVMPRDVDKVLIGADAV 187 (282)
T ss_dssp HHHHCTESEEEEE-SEE
T ss_pred HHHHHhCCeeEEeeeEE
Confidence 35677 99999997554
No 447
>PRK12686 carbamate kinase; Reviewed
Probab=23.52 E-value=1.4e+02 Score=24.72 Aligned_cols=38 Identities=13% Similarity=0.076 Sum_probs=26.2
Q ss_pred CCceEEEEEcCC----cchH--------HHHHHHHHHhcccCCCceEEEEEc
Q 028841 1 MATKVYIVYYSM----YGHV--------EKLAEEIKKGASSVEGVEAKLWQV 40 (203)
Q Consensus 1 Mm~kilii~~S~----~g~T--------~~la~~i~~~~~~~~g~~v~~~~l 40 (203)
||++|+|-++-. .|.+ +..++.|++-.+. |+++.+.+=
T Consensus 1 ~~~~iVialGGnAl~~~~~~~~~q~~~~~~~a~~ia~l~~~--g~~~vi~HG 50 (312)
T PRK12686 1 MKEKIVIALGGNAILQTEATAEAQQTAVREAAQHLVDLIEA--GHDIVITHG 50 (312)
T ss_pred CCCEEEEEcChHhhCCCCCChHHHHHHHHHHHHHHHHHHHC--CCEEEEEeC
Confidence 788888888752 2333 7778888777763 777776654
No 448
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=23.51 E-value=57 Score=26.81 Aligned_cols=53 Identities=17% Similarity=0.156 Sum_probs=32.5
Q ss_pred hhhhhhcCeeEEec--------cccCCccHHHHHH---HHHHhcccccccCCCCCceEEEEecCCC
Q 028841 65 PNELAEADGFVFGF--------PTRFGMMAAQFKA---FLDATGGLWRTQQLAGKPAGMFYSTGSQ 119 (203)
Q Consensus 65 ~~~l~~aD~iiigs--------P~y~~~~~~~~k~---~ld~~~~~~~~~~l~gK~~~~~~t~g~~ 119 (203)
-+.+.+=|.|||-+ -++-+.+-+.+++ |.+++... .+.+++|+++.|+|+|-.
T Consensus 121 n~~l~D~~~vviDtRN~YE~~iG~F~gAv~p~~~tFrefP~~v~~~--~~~~~~KkVvmyCTGGIR 184 (308)
T COG1054 121 NELLSDPDVVVIDTRNDYEVAIGHFEGAVEPDIETFREFPAWVEEN--LDLLKDKKVVMYCTGGIR 184 (308)
T ss_pred HHHhcCCCeEEEEcCcceeEeeeeecCccCCChhhhhhhHHHHHHH--HHhccCCcEEEEcCCcee
Confidence 45677788888764 2333444444444 44444321 236899999999998654
No 449
>PHA03075 glutaredoxin-like protein; Provisional
Probab=23.50 E-value=1.7e+02 Score=20.57 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=16.6
Q ss_pred CceEEEEEcCCc-chHHHHHHHHHHhccc
Q 028841 2 ATKVYIVYYSMY-GHVEKLAEEIKKGASS 29 (203)
Q Consensus 2 m~kilii~~S~~-g~T~~la~~i~~~~~~ 29 (203)
|++.+|+.|=+. |-.+.+-+.+ +.++.
T Consensus 1 mK~tLILfGKP~C~vCe~~s~~l-~~led 28 (123)
T PHA03075 1 MKKTLILFGKPLCSVCESISEAL-KELED 28 (123)
T ss_pred CCceEEEeCCcccHHHHHHHHHH-HHhhc
Confidence 679999999764 5444433333 55554
No 450
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=23.44 E-value=1.1e+02 Score=22.14 Aligned_cols=26 Identities=8% Similarity=0.222 Sum_probs=17.1
Q ss_pred CCceEEEEEcC-CcchHHHHHHHHHHhcc
Q 028841 1 MATKVYIVYYS-MYGHVEKLAEEIKKGAS 28 (203)
Q Consensus 1 Mm~kilii~~S-~~g~T~~la~~i~~~~~ 28 (203)
||++|.+ .|. ..|.| .+++.+++.+.
T Consensus 1 ~~~~i~~-~G~~GsGKs-t~~~~la~~lg 27 (171)
T PRK03731 1 MTQPLFL-VGARGCGKT-TVGMALAQALG 27 (171)
T ss_pred CCCeEEE-ECCCCCCHH-HHHHHHHHHhC
Confidence 7755444 554 45665 58899988874
No 451
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=23.42 E-value=1.1e+02 Score=22.58 Aligned_cols=43 Identities=16% Similarity=0.070 Sum_probs=27.0
Q ss_pred hhhhcCeeEEeccccC--CccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 67 ELAEADGFVFGFPTRF--GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 67 ~l~~aD~iiigsP~y~--~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...++|.||+...... ......+.+|+.+.. -++|+++.++++
T Consensus 61 ~~~~~D~liipGg~~~~~~~~~~~l~~~l~~~~-------~~~~~i~aic~g 105 (187)
T cd03137 61 ALAAADTVIVPGGPDVDGRPPPPALLAALRRAA-------ARGARVASVCTG 105 (187)
T ss_pred ccCCCCEEEECCCcccccccCCHHHHHHHHHHH-------hcCCEEEEECHH
Confidence 4568899988753222 233456667776652 467888877765
No 452
>PRK09932 glycerate kinase II; Provisional
Probab=23.40 E-value=1.7e+02 Score=25.08 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=29.9
Q ss_pred eEEEEEcCCcc--hHHHHHHHHHHhcccC-CCceEEEEEcCCC
Q 028841 4 KVYIVYYSMYG--HVEKLAEEIKKGASSV-EGVEAKLWQVPET 43 (203)
Q Consensus 4 kilii~~S~~g--~T~~la~~i~~~~~~~-~g~~v~~~~l~~~ 43 (203)
||+|.--|-.| ....++++|++++++. ...++..+.+.|-
T Consensus 2 kiliApDsFKgsLsA~eaa~ai~~G~~~~~p~~~v~~~P~ADG 44 (381)
T PRK09932 2 KIVIAPDSFKESLSAEKCCQAIKAGFSTLFPDANYICLPIADG 44 (381)
T ss_pred cEEEEecCCCCccCHHHHHHHHHHHHHHhCCCCEEEEeeccCC
Confidence 89998888665 4678999999999864 4556667776653
No 453
>PTZ00445 p36-lilke protein; Provisional
Probab=23.38 E-value=2.6e+02 Score=21.93 Aligned_cols=75 Identities=8% Similarity=0.005 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCCccHHHHHHHHH
Q 028841 15 HVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLD 94 (203)
Q Consensus 15 ~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~~~~~~~k~~ld 94 (203)
+....++.+.+.+++ .|+.+-..|+....+.-- ..... +. .+|... +-.++++.++.|+.
T Consensus 26 ~~~~~~~~~v~~L~~-~GIk~Va~D~DnTlI~~H--sgG~~----------~~--~~~~~~-----~~~~~tpefk~~~~ 85 (219)
T PTZ00445 26 NPHESADKFVDLLNE-CGIKVIASDFDLTMITKH--SGGYI----------DP--DNDDIR-----VLTSVTPDFKILGK 85 (219)
T ss_pred CHHHHHHHHHHHHHH-cCCeEEEecchhhhhhhh--ccccc----------CC--Ccchhh-----hhccCCHHHHHHHH
Confidence 556788999999999 799999999877532100 00000 00 011111 22457788999999
Q ss_pred HhcccccccCCCCCceEEEEec
Q 028841 95 ATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 95 ~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
++. -.|-++++++-+
T Consensus 86 ~l~-------~~~I~v~VVTfS 100 (219)
T PTZ00445 86 RLK-------NSNIKISVVTFS 100 (219)
T ss_pred HHH-------HCCCeEEEEEcc
Confidence 884 256676666543
No 454
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=23.36 E-value=2.2e+02 Score=19.52 Aligned_cols=35 Identities=11% Similarity=0.029 Sum_probs=22.0
Q ss_pred EEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCc
Q 028841 7 IVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLP 45 (203)
Q Consensus 7 ii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~ 45 (203)
.||+.++-.|-+-|....+ + .|++++++|+.+..+
T Consensus 3 ~iy~~p~C~~crkA~~~L~---~-~gi~~~~~d~~~~p~ 37 (113)
T cd03033 3 IFYEKPGCANNARQKALLE---A-AGHEVEVRDLLTEPW 37 (113)
T ss_pred EEEECCCCHHHHHHHHHHH---H-cCCCcEEeehhcCCC
Confidence 4788776444443443333 2 588999999987644
No 455
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=23.34 E-value=4e+02 Score=21.97 Aligned_cols=34 Identities=12% Similarity=0.135 Sum_probs=23.1
Q ss_pred eEEEEEcCC-cchHHHHHHHHHHhcccCCCceEEEE
Q 028841 4 KVYIVYYSM-YGHVEKLAEEIKKGASSVEGVEAKLW 38 (203)
Q Consensus 4 kilii~~S~-~g~T~~la~~i~~~~~~~~g~~v~~~ 38 (203)
+|.+|.-+. +..-..+.+-+.+.+++ .|+++.+.
T Consensus 25 ~i~~v~k~~~~pf~~~~~~Gi~~aa~~-~G~~v~~~ 59 (336)
T PRK15408 25 RIAFIPKLVGVGFFTSGGNGAKEAGKE-LGVDVTYD 59 (336)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHH-hCCEEEEE
Confidence 666666553 44556677788888877 68887653
No 456
>PRK10307 putative glycosyl transferase; Provisional
Probab=23.32 E-value=1.3e+02 Score=25.37 Aligned_cols=37 Identities=16% Similarity=0.255 Sum_probs=27.0
Q ss_pred eEEEEEc--CC-cchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 4 KVYIVYY--SM-YGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 4 kilii~~--S~-~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
||++|.. .+ .|.++.....+++.+.+ .|++|+++...
T Consensus 2 kIlii~~~~~P~~~g~~~~~~~l~~~L~~-~G~~V~vit~~ 41 (412)
T PRK10307 2 KILVYGINYAPELTGIGKYTGEMAEWLAA-RGHEVRVITAP 41 (412)
T ss_pred eEEEEecCCCCCccchhhhHHHHHHHHHH-CCCeEEEEecC
Confidence 8999863 34 35555666777888888 79999998754
No 457
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=23.31 E-value=3.8e+02 Score=21.28 Aligned_cols=13 Identities=15% Similarity=0.018 Sum_probs=10.9
Q ss_pred hhhcCeeEEeccc
Q 028841 68 LAEADGFVFGFPT 80 (203)
Q Consensus 68 l~~aD~iiigsP~ 80 (203)
+.+.|.|++++|.
T Consensus 59 l~~~DvVvi~a~~ 71 (265)
T PRK13304 59 VEDVDLVVECASV 71 (265)
T ss_pred hcCCCEEEEcCCh
Confidence 4789999999874
No 458
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=23.30 E-value=49 Score=21.38 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=12.7
Q ss_pred hhhhhhcCeeEEeccccC
Q 028841 65 PNELAEADGFVFGFPTRF 82 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~ 82 (203)
.+.+.++|.||++.|-+.
T Consensus 56 ~~~~~~advvilav~p~~ 73 (96)
T PF03807_consen 56 EEAAQEADVVILAVKPQQ 73 (96)
T ss_dssp HHHHHHTSEEEE-S-GGG
T ss_pred HHhhccCCEEEEEECHHH
Confidence 456788999999998654
No 459
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=23.27 E-value=1.7e+02 Score=24.12 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=16.1
Q ss_pred EEEEEcCC-cchHHHHHHHHHHh
Q 028841 5 VYIVYYSM-YGHVEKLAEEIKKG 26 (203)
Q Consensus 5 ilii~~S~-~g~T~~la~~i~~~ 26 (203)
++||.|+. ++||.+|++...+.
T Consensus 213 ~miVVGg~~SsNT~kL~~i~~~~ 235 (298)
T PRK01045 213 LVIVVGSKNSSNSNRLREVAEEA 235 (298)
T ss_pred EEEEECCCCCccHHHHHHHHHHH
Confidence 56677765 67999998876554
No 460
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=23.02 E-value=1.2e+02 Score=22.04 Aligned_cols=78 Identities=17% Similarity=0.236 Sum_probs=43.0
Q ss_pred eEEEEEcCC-----------cch--HHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhh
Q 028841 4 KVYIVYYSM-----------YGH--VEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAE 70 (203)
Q Consensus 4 kilii~~S~-----------~g~--T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~ 70 (203)
||+||++.. +|+ -+.+-+.+.+...+ .|++++++.-... .+.++. ..+....
T Consensus 3 ~ilvinGPNLN~LG~REp~iYG~~tl~~i~~~~~~~a~~-~g~~~~~~QSN~E--GelId~------------i~~a~~~ 67 (146)
T PRK13015 3 KILVLNGPNLNLLGTREPAIYGHETLADVEALCRAAAEA-LGLEVEFRQSNHE--GELIDW------------IHEARGD 67 (146)
T ss_pred EEEEEeCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHH-cCCEEEEEeeCcH--HHHHHH------------HHHhhhc
Confidence 799999872 453 44556666666665 5777776654321 111110 1223345
Q ss_pred cCeeEEeccccCCccHHHHHHHHHHhc
Q 028841 71 ADGFVFGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 71 aD~iiigsP~y~~~~~~~~k~~ld~~~ 97 (203)
+|+|||=---|- .-+-.+++.+..+.
T Consensus 68 ~dgiIINpga~T-HtSiAl~DAl~~~~ 93 (146)
T PRK13015 68 VAGIVINPGAYT-HTSVAIRDALAALE 93 (146)
T ss_pred CCEEEEcchHHh-hhHHHHHHHHHcCC
Confidence 788777655553 23344666666554
No 461
>PRK14098 glycogen synthase; Provisional
Probab=22.87 E-value=1.5e+02 Score=25.99 Aligned_cols=38 Identities=18% Similarity=0.161 Sum_probs=28.3
Q ss_pred CCceEEEEEc-----CCcchHHHHHHHHHHhcccCCCceEEEEEc
Q 028841 1 MATKVYIVYY-----SMYGHVEKLAEEIKKGASSVEGVEAKLWQV 40 (203)
Q Consensus 1 Mm~kilii~~-----S~~g~T~~la~~i~~~~~~~~g~~v~~~~l 40 (203)
|| ||+.|.. +.+|.-.-++..+-+.+.+ .|++|+++-.
T Consensus 5 ~~-~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~-~g~~v~v~~P 47 (489)
T PRK14098 5 NF-KVLYVSGEVSPFVRVSALADFMASFPQALEE-EGFEARIMMP 47 (489)
T ss_pred Cc-EEEEEeecchhhcccchHHHHHHHHHHHHHH-CCCeEEEEcC
Confidence 44 8887753 2477777788888888888 7999887654
No 462
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=22.82 E-value=2.4e+02 Score=18.80 Aligned_cols=14 Identities=21% Similarity=0.361 Sum_probs=10.6
Q ss_pred hhcCeeEEeccccC
Q 028841 69 AEADGFVFGFPTRF 82 (203)
Q Consensus 69 ~~aD~iiigsP~y~ 82 (203)
.++|.||+|+.-..
T Consensus 93 ~~~dlIV~G~~~~~ 106 (132)
T cd01988 93 RQADLIIMGWHGST 106 (132)
T ss_pred cCCCEEEEecCCCC
Confidence 46899999987554
No 463
>PRK06487 glycerate dehydrogenase; Provisional
Probab=22.71 E-value=3.6e+02 Score=22.14 Aligned_cols=59 Identities=19% Similarity=0.266 Sum_probs=32.9
Q ss_pred HHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCCccHHHHHHHHHH
Q 028841 19 LAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDA 95 (203)
Q Consensus 19 la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~ 95 (203)
+.+++++.++. .|.+|..++.... .. .. +. ....+.+.++|.|++..|.-- .-+.+++.
T Consensus 159 IG~~vA~~l~~-fgm~V~~~~~~~~-~~-~~---------~~-~~l~ell~~sDiv~l~lPlt~-----~T~~li~~ 217 (317)
T PRK06487 159 LGGAVARLAEA-FGMRVLIGQLPGR-PA-RP---------DR-LPLDELLPQVDALTLHCPLTE-----HTRHLIGA 217 (317)
T ss_pred HHHHHHHHHhh-CCCEEEEECCCCC-cc-cc---------cc-cCHHHHHHhCCEEEECCCCCh-----HHhcCcCH
Confidence 55556666655 5777776664311 00 00 00 012456789999999999543 34555544
No 464
>PRK06932 glycerate dehydrogenase; Provisional
Probab=22.61 E-value=4.2e+02 Score=21.76 Aligned_cols=60 Identities=15% Similarity=0.133 Sum_probs=32.8
Q ss_pred HHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCCccHHHHHHHHHH
Q 028841 19 LAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDA 95 (203)
Q Consensus 19 la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~ 95 (203)
+.+++++.++. .|.+|..++-... ..+ . . .. ....+.+.++|.|++..|.- +.-+.+|+.
T Consensus 158 IG~~va~~l~~-fg~~V~~~~~~~~--~~~-~---~----~~-~~l~ell~~sDiv~l~~Plt-----~~T~~li~~ 217 (314)
T PRK06932 158 LGTEVGRLAQA-LGMKVLYAEHKGA--SVC-R---E----GY-TPFEEVLKQADIVTLHCPLT-----ETTQNLINA 217 (314)
T ss_pred HHHHHHHHHhc-CCCEEEEECCCcc--ccc-c---c----cc-CCHHHHHHhCCEEEEcCCCC-----hHHhcccCH
Confidence 55555566655 5777766653211 000 0 0 00 11245688999999999954 334555554
No 465
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=22.60 E-value=2.6e+02 Score=24.57 Aligned_cols=87 Identities=21% Similarity=0.214 Sum_probs=49.3
Q ss_pred ceEEEEEcCC-c-chHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHH------hccCCCCCCCCCCCCChhhhh-hcCe
Q 028841 3 TKVYIVYYSM-Y-GHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEV------LGKMSAPPKSDVPIITPNELA-EADG 73 (203)
Q Consensus 3 ~kilii~~S~-~-g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~------~~~~~~~~~~d~~~~~~~~l~-~aD~ 73 (203)
++|+|+.|+- + |.--.+|+.+.. .|++|+++-+.+...... +....... .+..+ ....+. .+|.
T Consensus 60 ~~VlVlcG~GNNGGDGlv~AR~L~~-----~G~~V~v~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~-~~~~l~~~~dl 132 (462)
T PLN03049 60 RRVLALCGPGNNGGDGLVAARHLHH-----FGYKPSICYPKRTDKPLYNGLVTQLESLSVPF-LSVED-LPSDLSSQFDI 132 (462)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHH-----CCCceEEEEECCCCCHHHHHHHHHHHHcCCce-ecccc-cchhhccCCcE
Confidence 3688888883 3 455556666543 577888887765432211 11111110 01000 012333 5788
Q ss_pred eE---EeccccCCccHHHHHHHHHHhc
Q 028841 74 FV---FGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 74 ii---igsP~y~~~~~~~~k~~ld~~~ 97 (203)
|| ||+-. .+.+.++++.+++.+.
T Consensus 133 IVDaLfGtG~-~g~l~~~~~~lI~~iN 158 (462)
T PLN03049 133 VVDAMFGFSF-HGAPRPPFDDLIQKLV 158 (462)
T ss_pred EEEecccccc-CCCCchHHHHHHHHHH
Confidence 84 77774 6788899999999875
No 466
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=22.55 E-value=1.9e+02 Score=23.63 Aligned_cols=22 Identities=27% Similarity=0.241 Sum_probs=16.3
Q ss_pred EEEEEcCC-cchHHHHHHHHHHh
Q 028841 5 VYIVYYSM-YGHVEKLAEEIKKG 26 (203)
Q Consensus 5 ilii~~S~-~g~T~~la~~i~~~ 26 (203)
++||.|+. ++||.+|++...+.
T Consensus 212 ~miVVGg~~SsNT~rL~eia~~~ 234 (281)
T PRK12360 212 VMIVIGGKHSSNTQKLVKICEKN 234 (281)
T ss_pred EEEEecCCCCccHHHHHHHHHHH
Confidence 56677765 67999998877664
No 467
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=22.52 E-value=3.4e+02 Score=26.26 Aligned_cols=75 Identities=21% Similarity=0.319 Sum_probs=41.2
Q ss_pred CCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccCCCCCccceecC--CCCCCCC-HH
Q 028841 104 QLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG--DGSRQPT-EL 180 (203)
Q Consensus 104 ~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~-~~ 180 (203)
.+.|+.++++--+|+..|...- -..+.|+..|..+-- -||+..|+ |-| =++ .+| -.
T Consensus 834 ~LtGnaIgLVLGGGGARG~ahi---Gvl~ALeE~GIPvD~---------------VGGTSIGa--fiGaLYA~-e~d~~~ 892 (1158)
T KOG2968|consen 834 ILTGNAIGLVLGGGGARGAAHI---GVLQALEEAGIPVDM---------------VGGTSIGA--FIGALYAE-ERDLVP 892 (1158)
T ss_pred HHhCCeEEEEecCcchhhhhHH---HHHHHHHHcCCCeee---------------eccccHHH--hhhhhhhc-cCcchH
Confidence 3789999988766554443322 245667776654321 11222222 111 121 333 34
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 028841 181 ELEQAFHQGKHIAGIAKKL 199 (203)
Q Consensus 181 ~~~~~~~~g~~l~~~~~~~ 199 (203)
...+|++|++++....+.+
T Consensus 893 v~~rak~f~~~mssiw~~l 911 (1158)
T KOG2968|consen 893 VFGRAKKFAGKMSSIWRLL 911 (1158)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5669999999988776654
No 468
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=22.50 E-value=2.5e+02 Score=19.72 Aligned_cols=35 Identities=11% Similarity=0.087 Sum_probs=22.7
Q ss_pred EEEEcCCcc-hHHHHHHHHHHhcccCCCceEEEEEcCCCCc
Q 028841 6 YIVYYSMYG-HVEKLAEEIKKGASSVEGVEAKLWQVPETLP 45 (203)
Q Consensus 6 lii~~S~~g-~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~ 45 (203)
+.||+.++- +.++..+.+.+ .|++++++|+.+..+
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~-----~gi~~~~~d~~~~p~ 38 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKA-----SGHDVEVQDILKEPW 38 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-----CCCCcEEEeccCCCc
Confidence 457888764 44444434333 588999999987654
No 469
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=22.49 E-value=3.4e+02 Score=20.51 Aligned_cols=46 Identities=4% Similarity=0.006 Sum_probs=28.9
Q ss_pred hhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEe
Q 028841 66 NELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYS 115 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t 115 (203)
.-+..+|++|+..-+-.-.--..++.|++.+... ...+.++.+++.
T Consensus 68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~----~~~~~piilVgN 113 (202)
T cd04120 68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKY----ASEDAELLLVGN 113 (202)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh----CCCCCcEEEEEE
Confidence 4578999999986665544444566777765421 234566666665
No 470
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=22.46 E-value=1.6e+02 Score=23.79 Aligned_cols=29 Identities=7% Similarity=-0.026 Sum_probs=22.8
Q ss_pred hhcCeeEEeccccCCccHHHHHHHHHHhc
Q 028841 69 AEADGFVFGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 69 ~~aD~iiigsP~y~~~~~~~~k~~ld~~~ 97 (203)
..+|++++..|.|+..-+..+..|+..+.
T Consensus 98 ~Gad~v~v~~P~y~~~~~~~l~~~f~~va 126 (293)
T PRK04147 98 LGYDAISAVTPFYYPFSFEEICDYYREII 126 (293)
T ss_pred cCCCEEEEeCCcCCCCCHHHHHHHHHHHH
Confidence 36799999999998766677777777764
No 471
>PHA02774 E1; Provisional
Probab=22.43 E-value=2.8e+02 Score=25.37 Aligned_cols=70 Identities=13% Similarity=0.129 Sum_probs=43.0
Q ss_pred eEEEEEcCC-cchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEe--ccc
Q 028841 4 KVYIVYYSM-YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFG--FPT 80 (203)
Q Consensus 4 kilii~~S~-~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiig--sP~ 80 (203)
+.++|||.+ +|.|. ++..|.+.+. |.-+-.++....- ....+.+++.+|+= +..
T Consensus 435 nciv~~GPP~TGKS~-fa~sL~~~L~---G~vi~fvN~~s~F-------------------wLqpl~d~ki~vlDD~t~~ 491 (613)
T PHA02774 435 NCLVIYGPPDTGKSM-FCMSLIKFLK---GKVISFVNSKSHF-------------------WLQPLADAKIALLDDATHP 491 (613)
T ss_pred cEEEEECCCCCCHHH-HHHHHHHHhC---CCEEEEEECcccc-------------------ccchhccCCEEEEecCcch
Confidence 467888876 68874 6777777774 4345555543210 13467788888884 334
Q ss_pred cCCccHHHHHHHHHHh
Q 028841 81 RFGMMAAQFKAFLDAT 96 (203)
Q Consensus 81 y~~~~~~~~k~~ld~~ 96 (203)
.|..+...||+.||--
T Consensus 492 ~w~y~d~~Lrn~LdG~ 507 (613)
T PHA02774 492 CWDYIDTYLRNALDGN 507 (613)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 4445555677777643
No 472
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=22.41 E-value=4.5e+02 Score=21.72 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=25.2
Q ss_pred hhhhhhcCeeEEeccccCCccHHHHHHHHHHhc
Q 028841 65 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~ 97 (203)
.+..+++|.+|+-+|-= +.-+..+|+|++.+.
T Consensus 136 ~EAvk~aei~I~ftPfG-~~t~~Iikki~~~ip 167 (342)
T PRK00961 136 REAVADADIVITWLPKG-GMQPDIIEKFADDIK 167 (342)
T ss_pred HHHhcCCCEEEEecCCC-CCchHHHHHHHhhCC
Confidence 67889999999999942 224678999999873
No 473
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.40 E-value=3.7e+02 Score=20.76 Aligned_cols=36 Identities=22% Similarity=0.137 Sum_probs=25.0
Q ss_pred eEEEEEcC-CcchHHHHHHHHHHhcccCCCceEEEEEc
Q 028841 4 KVYIVYYS-MYGHVEKLAEEIKKGASSVEGVEAKLWQV 40 (203)
Q Consensus 4 kilii~~S-~~g~T~~la~~i~~~~~~~~g~~v~~~~l 40 (203)
||.++.-+ .+..-..+...+.+.+++ .|.++.+.+.
T Consensus 1 ~igv~~~~~~~~~~~~~~~~i~~~~~~-~g~~v~~~~~ 37 (282)
T cd06318 1 KIGFSQYTLNSPFFAALTEAAKAHAKA-LGYELISTDA 37 (282)
T ss_pred CeeEEeccccCHHHHHHHHHHHHHHHH-cCCEEEEEcC
Confidence 35555433 345667788899999988 7888877654
No 474
>PRK09291 short chain dehydrogenase; Provisional
Probab=22.39 E-value=1e+02 Score=23.80 Aligned_cols=10 Identities=10% Similarity=0.049 Sum_probs=7.1
Q ss_pred hcCeeEEecc
Q 028841 70 EADGFVFGFP 79 (203)
Q Consensus 70 ~aD~iiigsP 79 (203)
..|.||..+.
T Consensus 73 ~id~vi~~ag 82 (257)
T PRK09291 73 DVDVLLNNAG 82 (257)
T ss_pred CCCEEEECCC
Confidence 6788887643
No 475
>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen. This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Probab=22.39 E-value=2.9e+02 Score=22.56 Aligned_cols=33 Identities=6% Similarity=0.035 Sum_probs=22.3
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEE
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKL 37 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~ 37 (203)
+|+.+++.. +..++.+++.+.+.+++ .|.++..
T Consensus 125 k~vaii~~~-~~~g~~~~~~f~~~~~~-~G~~vv~ 157 (336)
T cd06339 125 RRPLVLAPD-GAYGQRVADAFRQAWQQ-LGGTVVA 157 (336)
T ss_pred cceEEEecC-ChHHHHHHHHHHHHHHH-cCCceee
Confidence 467777743 34456788888888887 5666543
No 476
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=22.36 E-value=2.4e+02 Score=22.00 Aligned_cols=35 Identities=23% Similarity=0.285 Sum_probs=22.7
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
||.|++....-.++.+.+++ ++ .|++++++++.+.
T Consensus 1 ~~~~~~~~~~~~~~~l~~a~----~~-~g~~~~~~~~~~~ 35 (277)
T TIGR00768 1 KLAILYDRIRLDEKMLKEAA----EE-LGIDYKVVTPPAI 35 (277)
T ss_pred CEEEEEcCCCHHHHHHHHHH----HH-cCCceEEEEhHHc
Confidence 57788776444555555554 44 5889999987654
No 477
>PF01750 HycI: Hydrogenase maturation protease; InterPro: IPR000671 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. Metalloproteases are the most diverse of the four main types of protease, with more than 30 families identified to date []. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as abXHEbbHbc, where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesized as a precursor devoid of the metalloenzyme active site. This precursor undergoes a complex post-translational maturation process that requires a number of accessory proteins [, , ]. At one step of this process, after nickel incorporation, each hydrogenase isoenzyme is processed by proteolytic cleavage at the C-terminal end by the corresponding hydrogenase maturation endopeptidase []. For example, Escherichia coli HycI is involved in processing of pre-HycE (the large subunit of hydrogenase 3) [, ]; HybD is involved in processing of pre-HybC (the large subunit of hydrogenase 2) []; and HyaD is assumed to be involved in processing of the large subunit of hydrogenase 1. This group represents metallopeptidases of the MEROPS peptidase family A31 (HybD endopeptidase family, clan AE). The cleavage site is after a His or an Arg, liberating a short peptide [, ]. This cleavage occurs only in the presence of nickel, and the endopeptidase probably uses the metal in the large subunit of [NiFe]-hydrogenases as a recognition motif []. There is no direct evidence for the active site or substrate-binding site, but there are predictions based on an available structure []. Nomenclature note: the following names are used in different organisms for members of this group: HycI, HybD, HyaD, HoxM, HoxW, HupD, HynC, HupM, VhoD, VhtD []. Gene/protein names are sometimes used interchangeably to designate various "hydrogenase cluster" proteins unrelated to each other in various organisms. For example, the following names are used for members of this group, but also for unrelated proteins: HupD is used in Azotobacter chroococcum and Anabaena species to designate an unrelated hydrogenase maturation factor; HydD is used to designate hydrogenase structural genes in Thermococcus litoralis, Pyrococcus abyssi, and other species.; GO: 0008047 enzyme activator activity, 0008233 peptidase activity; PDB: 1CFZ_E 2E85_B 2I8L_A 2KML_A.
Probab=22.23 E-value=1.2e+02 Score=21.02 Aligned_cols=54 Identities=13% Similarity=0.012 Sum_probs=33.4
Q ss_pred HHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCCccHHHHH
Q 028841 18 KLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFK 90 (203)
Q Consensus 18 ~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~~~~~~~k 90 (203)
++++.+++.... .+ .++++|....... ....+..+|.+||.=-+..+..|+.+.
T Consensus 2 ~v~~~L~~~~~~-~~-~v~vid~gt~g~~-----------------ll~~l~~~d~vIiVDAv~~~~~pG~i~ 55 (130)
T PF01750_consen 2 HVAERLKERYSP-PD-NVEVIDGGTDGLD-----------------LLDLLEGYDRVIIVDAVDGGGEPGTIY 55 (130)
T ss_dssp HHHHHHHHCEE---T-TEEEEEETTTCGG-----------------GHHHHSS-SEEEEEEE--SSS-TT-EE
T ss_pred HHHHHHHhhCCC-CC-CEEEEECCCCHHH-----------------HHHHHhCCCEEEEEEcCCCCCCCcEEE
Confidence 467777776654 22 5888988654221 245788899999998888888888654
No 478
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=22.20 E-value=3.4e+02 Score=20.30 Aligned_cols=59 Identities=24% Similarity=0.187 Sum_probs=30.3
Q ss_pred EEEEEcC--CcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecc
Q 028841 5 VYIVYYS--MYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFP 79 (203)
Q Consensus 5 ilii~~S--~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP 79 (203)
-+||+-| +-|.|+.++..+.+.... .+.++.+....+...+. ....++..-+-||+|.-
T Consensus 114 ~lvV~~STvppGtt~~~~~~ile~~~~-~~~~f~la~~PErl~~G---------------~a~~d~~~~~rvV~G~~ 174 (185)
T PF03721_consen 114 DLVVIESTVPPGTTEELLKPILEKRSG-KKEDFHLAYSPERLREG---------------RAIEDFRNPPRVVGGCD 174 (185)
T ss_dssp EEEEESSSSSTTHHHHHHHHHHHHHCC-TTTCEEEEE------TT---------------SHHHHHHSSSEEEEEES
T ss_pred ceEEEccEEEEeeehHhhhhhhhhhcc-cccCCeEEECCCccCCC---------------CcchhccCCCEEEEeCC
Confidence 4555666 357777777766666554 23345555444331100 01356777788877753
No 479
>PF06554 Olfactory_mark: Olfactory marker protein; InterPro: IPR009103 Olfactory marker protein (OMP) is a highly expressed, cytoplasmic protein found in mature olfactory sensory receptor neurons of all vertebrates. OMP is a modulator of the olfactory signal transduction cascade. The crystal structure of OMP reveals a beta sandwich consisting of eight strands in two sheets with a jelly-roll topology []. Three highly conserved regions have been identified as possible protein-protein interaction sites in OMP, indicating a possible role for OMP in modulating such interactions, thereby acting as a molecular switch [].; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0007608 sensory perception of smell; PDB: 1ZRI_A 1JYT_A 1JOD_B 1F35_A 1JOB_A.
Probab=22.20 E-value=1.1e+02 Score=21.94 Aligned_cols=16 Identities=38% Similarity=0.379 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 028841 182 LEQAFHQGKHIAGIAK 197 (203)
Q Consensus 182 ~~~~~~~g~~l~~~~~ 197 (203)
...+.+||++|++.++
T Consensus 108 EADa~EFGERiaELAK 123 (151)
T PF06554_consen 108 EADAQEFGERIAELAK 123 (151)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHH
Confidence 4568899999999886
No 480
>PRK13626 transcriptional regulator SgrR; Provisional
Probab=22.16 E-value=2.5e+02 Score=25.04 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=24.1
Q ss_pred EEEcCCcchHHHHHHHHHHhcccCCCceEEEEEc
Q 028841 7 IVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQV 40 (203)
Q Consensus 7 ii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l 40 (203)
+.+++.+.....+|+.|++.+++ .|+++++..+
T Consensus 407 l~~~~~~~~~~~~A~~iq~~l~~-~GI~v~i~~~ 439 (552)
T PRK13626 407 LTFYQDHSEHRVIAGIMQQLLAS-HGVTLEIQEI 439 (552)
T ss_pred EEEecCCccHHHHHHHHHHHHHH-hCcEEEEEEe
Confidence 33444345567899999999998 6999887544
No 481
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=22.15 E-value=2.9e+02 Score=19.51 Aligned_cols=47 Identities=6% Similarity=0.041 Sum_probs=27.6
Q ss_pred hhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 66 NELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..+..+|++++..-+-.-.--..++.|++.+... ...+.++.++++-
T Consensus 68 ~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~----~~~~~~iilvgnK 114 (161)
T cd04117 68 QYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEY----APEGVQKILIGNK 114 (161)
T ss_pred HHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEEC
Confidence 4567899999885544433233456777766421 1235666766653
No 482
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=22.06 E-value=4.7e+02 Score=21.85 Aligned_cols=37 Identities=14% Similarity=0.126 Sum_probs=21.2
Q ss_pred ceEEEEEcCC-cchH-HHHHHHHHHhcccCCCceEEEEEc
Q 028841 3 TKVYIVYYSM-YGHV-EKLAEEIKKGASSVEGVEAKLWQV 40 (203)
Q Consensus 3 ~kilii~~S~-~g~T-~~la~~i~~~~~~~~g~~v~~~~l 40 (203)
+++.+||.+. .|.. ...++.+.+.+++ .|+++.....
T Consensus 138 ~~vaiiy~~~~~~~~~~~~~~~l~~~~~~-~gi~v~~~~~ 176 (387)
T cd06386 138 RSALLVYEDDKQERNCYFTLEGVHHVFQE-EGYHMSIYPF 176 (387)
T ss_pred eEEEEEEEcCCCCccceehHHHHHHHHHh-cCceEEEEec
Confidence 4677777542 2321 1136677777776 6777765543
No 483
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=22.03 E-value=1.7e+02 Score=19.64 Aligned_cols=32 Identities=13% Similarity=0.142 Sum_probs=17.5
Q ss_pred EcCCc-chHHHHHHHHHHhcccCCCceEEEEEcCCCCc
Q 028841 9 YYSMY-GHVEKLAEEIKKGASSVEGVEAKLWQVPETLP 45 (203)
Q Consensus 9 ~~S~~-g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~ 45 (203)
|++++ +.++++.+.+.+ .|++++.+|+.+.++
T Consensus 1 Y~~~~C~t~rka~~~L~~-----~gi~~~~~d~~k~p~ 33 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEE-----NGIEYEFIDYKKEPL 33 (110)
T ss_dssp EE-TT-HHHHHHHHHHHH-----TT--EEEEETTTS--
T ss_pred CcCCCCHHHHHHHHHHHH-----cCCCeEeehhhhCCC
Confidence 45544 455555555443 688999999987643
No 484
>PRK00865 glutamate racemase; Provisional
Probab=21.99 E-value=3.6e+02 Score=21.40 Aligned_cols=36 Identities=28% Similarity=0.298 Sum_probs=22.8
Q ss_pred CCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCC
Q 028841 106 AGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 106 ~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~ 145 (203)
.++++++|-|+= ||. ..+.++.+.+.+..+.+++-.
T Consensus 4 ~~~~IgvfDSGi---GGL-tvl~~i~~~lp~~~~iY~~D~ 39 (261)
T PRK00865 4 MNAPIGVFDSGV---GGL-TVLREIRRLLPDEHIIYVGDT 39 (261)
T ss_pred CCCeEEEEECCc---cHH-HHHHHHHHHCCCCCEEEEecC
Confidence 467889887742 333 235666677766677777654
No 485
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=21.90 E-value=3.3e+02 Score=23.94 Aligned_cols=68 Identities=12% Similarity=0.059 Sum_probs=41.7
Q ss_pred chHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecccc-CCccHHHHHHH
Q 028841 14 GHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR-FGMMAAQFKAF 92 (203)
Q Consensus 14 g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y-~~~~~~~~k~~ 92 (203)
|+.-..|...++.|++ .|++++++|++...|-+. +...+.+.....||+.-=-| .|++-..+-.+
T Consensus 349 G~~v~~Al~Aa~~L~~-~GI~~~VIdl~tlkPlD~-------------~~i~~sv~kt~~vvtvEE~~~~gGlG~~va~~ 414 (464)
T PRK11892 349 SIGMTYALKAAEELAK-EGIDAEVIDLRTIRPMDT-------------ETIVESVKKTNRLVTVEEGWPQSGVGAEIAAR 414 (464)
T ss_pred cHHHHHHHHHHHHHHh-cCCCEEEEECCCCCcCCH-------------HHHHHHHHhcCeEEEEeCCCcCCcHHHHHHHH
Confidence 4445556666666766 699999999988754110 00134566777776664444 36677777666
Q ss_pred HHH
Q 028841 93 LDA 95 (203)
Q Consensus 93 ld~ 95 (203)
+-.
T Consensus 415 l~e 417 (464)
T PRK11892 415 VME 417 (464)
T ss_pred HHH
Confidence 644
No 486
>PRK06223 malate dehydrogenase; Reviewed
Probab=21.88 E-value=4.3e+02 Score=21.32 Aligned_cols=70 Identities=20% Similarity=0.230 Sum_probs=33.4
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHH-HhccCCCC---CCC-CCC-CCChhhhhhcCeeEE
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEE-VLGKMSAP---PKS-DVP-IITPNELAEADGFVF 76 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~-~~~~~~~~---~~~-d~~-~~~~~~l~~aD~iii 76 (203)
+||.||=+..-|.+ +|..++.. . .+ ++.++|..+..... ..+..++. ... .+. ....+.+.+||.||+
T Consensus 3 ~KI~VIGaG~vG~~--ia~~la~~--~-~~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~~~~aDiVii 76 (307)
T PRK06223 3 KKISIIGAGNVGAT--LAHLLALK--E-LG-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYEDIAGSDVVVI 76 (307)
T ss_pred CEEEEECCCHHHHH--HHHHHHhC--C-Ce-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHHHCCCCEEEE
Confidence 48888754333433 44444321 1 13 89999985532211 11100000 000 010 012467899999998
Q ss_pred ec
Q 028841 77 GF 78 (203)
Q Consensus 77 gs 78 (203)
..
T Consensus 77 ~~ 78 (307)
T PRK06223 77 TA 78 (307)
T ss_pred CC
Confidence 73
No 487
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=21.85 E-value=3.1e+02 Score=19.60 Aligned_cols=72 Identities=10% Similarity=0.100 Sum_probs=38.7
Q ss_pred EEcCCcchHHHHHH-HHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCCccH
Q 028841 8 VYYSMYGHVEKLAE-EIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMA 86 (203)
Q Consensus 8 i~~S~~g~T~~la~-~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~~~~ 86 (203)
+.++..|....+.. .++..++. .|+ +++++....+.+.+ .+...+.|.=+++-....++--
T Consensus 5 vigtv~~D~HdiGk~iv~~~l~~-~Gf--eVi~LG~~v~~e~~---------------v~aa~~~~adiVglS~l~~~~~ 66 (134)
T TIGR01501 5 VLGVIGSDCHAVGNKILDHAFTN-AGF--NVVNLGVLSPQEEF---------------IKAAIETKADAILVSSLYGHGE 66 (134)
T ss_pred EEEEecCChhhHhHHHHHHHHHH-CCC--EEEECCCCCCHHHH---------------HHHHHHcCCCEEEEecccccCH
Confidence 34554433333333 33444454 565 45777665432221 2345555555555555556666
Q ss_pred HHHHHHHHHhc
Q 028841 87 AQFKAFLDATG 97 (203)
Q Consensus 87 ~~~k~~ld~~~ 97 (203)
..++.+++++.
T Consensus 67 ~~~~~~~~~l~ 77 (134)
T TIGR01501 67 IDCKGLRQKCD 77 (134)
T ss_pred HHHHHHHHHHH
Confidence 67899998885
No 488
>PRK14866 hypothetical protein; Provisional
Probab=21.80 E-value=2.3e+02 Score=24.87 Aligned_cols=24 Identities=13% Similarity=-0.025 Sum_probs=18.2
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhc
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGA 27 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~ 27 (203)
+++||+....--+..+++.+.+.+
T Consensus 2 ~~~iv~S~~DpAS~ni~~~L~~l~ 25 (451)
T PRK14866 2 MIAIVVSRADPASVHIREHLLELL 25 (451)
T ss_pred eEEEEEeCCCchhhhHHHHHHHhc
Confidence 488888777666777888888755
No 489
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=21.78 E-value=90 Score=21.23 Aligned_cols=26 Identities=12% Similarity=0.353 Sum_probs=21.2
Q ss_pred hcCeeEEeccccCCccHHHHHHHHHH
Q 028841 70 EADGFVFGFPTRFGMMAAQFKAFLDA 95 (203)
Q Consensus 70 ~aD~iiigsP~y~~~~~~~~k~~ld~ 95 (203)
.-|.|||||-.....+|+.++.++..
T Consensus 53 ~pe~liiGtG~~~~~~~~~~~~~l~~ 78 (110)
T PF04430_consen 53 KPEVLIIGTGKRQLFLPPELREYLRK 78 (110)
T ss_dssp S-SEEEEEETTS-SECTHHHHHHHHT
T ss_pred CCcEEEEccCCccccCCHHHHHHHHH
Confidence 56999999999988899999988764
No 490
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=21.77 E-value=1.7e+02 Score=25.03 Aligned_cols=29 Identities=14% Similarity=0.156 Sum_probs=22.0
Q ss_pred hhhhhhcCeeEEeccccCCccHHHHHHHHHH
Q 028841 65 PNELAEADGFVFGFPTRFGMMAAQFKAFLDA 95 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~ 95 (203)
.+.|.++|.+|-..|-|... ..+|..++.
T Consensus 63 ~~li~~~d~VIn~~p~~~~~--~i~ka~i~~ 91 (389)
T COG1748 63 VALIKDFDLVINAAPPFVDL--TILKACIKT 91 (389)
T ss_pred HHHHhcCCEEEEeCCchhhH--HHHHHHHHh
Confidence 56788999999999888765 556666554
No 491
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.74 E-value=1.1e+02 Score=24.89 Aligned_cols=18 Identities=22% Similarity=0.089 Sum_probs=14.6
Q ss_pred hhhhhhcCeeEEeccccC
Q 028841 65 PNELAEADGFVFGFPTRF 82 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~ 82 (203)
.+.+++||.||.++|.-.
T Consensus 196 ~~~~~~ADIVV~avG~~~ 213 (285)
T PRK14189 196 AAHTRQADIVVAAVGKRN 213 (285)
T ss_pred HHHhhhCCEEEEcCCCcC
Confidence 457899999999999543
No 492
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=21.56 E-value=4e+02 Score=20.85 Aligned_cols=25 Identities=12% Similarity=-0.069 Sum_probs=18.2
Q ss_pred hhhhhcCeeEEeccccCCccHHHHHHHHHHhc
Q 028841 66 NELAEADGFVFGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~ 97 (203)
..+.++|.|||.||. .++.|++++.
T Consensus 51 ~~l~~~d~iifTS~n-------aV~~~~~~l~ 75 (255)
T PRK05752 51 LELDRYCAVIVVSKP-------AARLGLELLD 75 (255)
T ss_pred hcCCCCCEEEEECHH-------HHHHHHHHHH
Confidence 457899999999964 4566666653
No 493
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=21.55 E-value=3.6e+02 Score=22.81 Aligned_cols=28 Identities=18% Similarity=0.423 Sum_probs=15.1
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEE
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQ 39 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~ 39 (203)
+|+++-+ |....+++.+.+ .|.++.++.
T Consensus 175 ~i~viD~---G~k~ni~~~L~~-----~G~~v~vvp 202 (358)
T TIGR01368 175 RVVVIDF---GVKQNILRRLVK-----RGCEVTVVP 202 (358)
T ss_pred EEEEEeC---CcHHHHHHHHHH-----CCCEEEEEc
Confidence 5666654 333345555544 466777664
No 494
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=21.46 E-value=2e+02 Score=23.54 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=19.2
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcc
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGAS 28 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~ 28 (203)
||-++..+++|||.+ +..+++.+.
T Consensus 2 ki~aisD~RtGnt~Q-aiaLa~~l~ 25 (329)
T COG3660 2 KIWAISDGRTGNTHQ-AIALAEQLT 25 (329)
T ss_pred ceEEeecCCCccHHH-HHHHHHHhh
Confidence 899999999999987 455666665
No 495
>PRK09982 universal stress protein UspD; Provisional
Probab=21.45 E-value=2.4e+02 Score=19.69 Aligned_cols=39 Identities=13% Similarity=0.090 Sum_probs=26.0
Q ss_pred CC-ceEEEEE-cCCcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 1 MA-TKVYIVY-YSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 1 Mm-~kilii~-~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
|| +|||+-+ +|. +++++++...+.++. .+.++.++.+-+
T Consensus 1 ~~~k~ILvavD~S~--~s~~al~~A~~lA~~-~~a~l~llhV~~ 41 (142)
T PRK09982 1 MAYKHIGVAISGNE--EDALLVNKALELARH-NDAHLTLIHIDD 41 (142)
T ss_pred CCceEEEEEecCCc--chHHHHHHHHHHHHH-hCCeEEEEEEcc
Confidence 54 6788765 344 346667766666655 577899888754
No 496
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=21.44 E-value=4.7e+02 Score=21.58 Aligned_cols=17 Identities=18% Similarity=0.257 Sum_probs=13.8
Q ss_pred hhhhhhcCeeEEecccc
Q 028841 65 PNELAEADGFVFGFPTR 81 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y 81 (203)
.+.+.++|.|++..|.+
T Consensus 54 ~ea~~~ADiVvLaVpp~ 70 (314)
T TIGR00465 54 EEAIPQADLIMNLLPDE 70 (314)
T ss_pred HHHHhcCCEEEEeCCcH
Confidence 34578999999999954
No 497
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=21.42 E-value=5.8e+02 Score=22.92 Aligned_cols=19 Identities=26% Similarity=0.167 Sum_probs=15.0
Q ss_pred hhhhhcCeeEEeccccCCc
Q 028841 66 NELAEADGFVFGFPTRFGM 84 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~ 84 (203)
+++.++|++|++.|.-..+
T Consensus 230 ~~l~d~d~LvI~~P~~~ls 248 (552)
T TIGR03521 230 ADLKKFDLIVIAKPTEAFS 248 (552)
T ss_pred ccccCcCEEEEeCCCccCC
Confidence 4567999999999975544
No 498
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=21.39 E-value=91 Score=16.15 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=16.3
Q ss_pred EEcCCcchHHHHHHHHHHhccc
Q 028841 8 VYYSMYGHVEKLAEEIKKGASS 29 (203)
Q Consensus 8 i~~S~~g~T~~la~~i~~~~~~ 29 (203)
|.-|.+|++-++|+.|.+.+++
T Consensus 7 I~ISTnG~sP~la~~iR~~ie~ 28 (30)
T PF14824_consen 7 IAISTNGKSPRLARLIRKEIER 28 (30)
T ss_dssp EEEEESSS-HHHHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHHHH
Confidence 3447789999999999888753
No 499
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=21.30 E-value=4.5e+02 Score=21.32 Aligned_cols=36 Identities=28% Similarity=0.325 Sum_probs=24.6
Q ss_pred CCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCC
Q 028841 106 AGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 106 ~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~ 145 (203)
..+++++|-|+= ||.. .+.++.+.|-+..+.+++-.
T Consensus 4 ~~~~IgvFDSGV---GGLs-Vlrei~~~LP~e~~iY~~D~ 39 (269)
T COG0796 4 PQPPIGVFDSGV---GGLS-VLREIRRQLPDEDIIYVGDT 39 (269)
T ss_pred cCCeEEEEECCC---CcHH-HHHHHHHHCCCCcEEEEecC
Confidence 457889887742 3433 36677788888888888764
No 500
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.21 E-value=1.9e+02 Score=23.70 Aligned_cols=35 Identities=14% Similarity=0.122 Sum_probs=27.0
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEE
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQ 39 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~ 39 (203)
+|.|++-........+++.+.+-+.+ .|+++.+.+
T Consensus 2 ~igii~~~~~~~~~~~~~~i~~~l~~-~g~~v~~~~ 36 (292)
T PRK01911 2 KIAIFGQTYQESASPYIQELFDELEE-RGAEVLIEE 36 (292)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHH-CCCEEEEec
Confidence 78888877666777889998888877 687776643
Done!