Query 028841
Match_columns 203
No_of_seqs 209 out of 2105
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 04:52:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028841.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028841hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5l_A Trp repressor binding p 100.0 3.1E-33 1.1E-37 213.8 19.0 193 2-200 5-199 (200)
2 3b6i_A Flavoprotein WRBA; flav 100.0 1.4E-32 4.8E-37 209.8 21.6 196 1-201 1-198 (198)
3 2zki_A 199AA long hypothetical 100.0 1.1E-31 3.7E-36 205.2 18.4 192 2-201 4-196 (199)
4 1ydg_A Trp repressor binding p 100.0 6.3E-32 2.2E-36 208.4 16.1 191 2-201 6-202 (211)
5 3d7n_A Flavodoxin, WRBA-like p 100.0 8.1E-31 2.8E-35 199.8 11.1 180 2-201 6-189 (193)
6 2ark_A Flavodoxin; FMN, struct 100.0 7.4E-28 2.5E-32 182.6 18.1 165 2-201 4-170 (188)
7 3hly_A Flavodoxin-like domain; 100.0 1.2E-27 4.2E-32 177.2 17.1 145 4-200 2-146 (161)
8 3fni_A Putative diflavin flavo 100.0 3.1E-27 1.1E-31 174.7 16.8 144 3-198 5-149 (159)
9 1sqs_A Conserved hypothetical 99.9 9.2E-27 3.2E-31 183.2 12.0 167 1-198 1-179 (242)
10 2vzf_A NADH-dependent FMN redu 99.9 3.8E-27 1.3E-31 180.0 9.5 174 1-199 1-178 (197)
11 3fvw_A Putative NAD(P)H-depend 99.9 1.2E-26 4E-31 176.6 10.9 178 1-200 1-186 (192)
12 3u7r_A NADPH-dependent FMN red 99.9 3E-25 1E-29 168.2 17.5 175 1-199 1-181 (190)
13 3f6r_A Flavodoxin; FMN binding 99.9 1.2E-25 3.9E-30 164.1 12.4 143 1-195 1-147 (148)
14 2q62_A ARSH; alpha/beta, flavo 99.9 7.7E-25 2.6E-29 172.4 17.7 177 2-201 34-213 (247)
15 5nul_A Flavodoxin; electron tr 99.9 1.5E-25 5.3E-30 161.5 12.1 135 5-194 1-137 (138)
16 2fzv_A Putative arsenical resi 99.9 3.6E-25 1.2E-29 176.4 14.6 178 2-201 58-238 (279)
17 3k1y_A Oxidoreductase; structu 99.9 5.3E-25 1.8E-29 167.1 11.9 172 2-200 11-190 (191)
18 1rtt_A Conserved hypothetical 99.9 1.9E-24 6.6E-29 164.3 13.2 176 3-200 7-186 (193)
19 1rli_A Trp repressor binding p 99.9 1.7E-25 5.7E-30 168.6 4.0 164 1-193 3-182 (184)
20 2q9u_A A-type flavoprotein; fl 99.9 1.2E-23 4.1E-28 177.1 15.6 149 2-200 256-407 (414)
21 4hs4_A Chromate reductase; tri 99.9 5.5E-24 1.9E-28 162.6 12.1 178 3-202 7-190 (199)
22 3gfs_A FMN-dependent NADPH-azo 99.9 9E-25 3.1E-29 163.6 7.5 167 4-199 2-170 (174)
23 2fz5_A Flavodoxin; alpha/beta 99.9 9.4E-24 3.2E-28 151.6 12.6 133 5-194 2-136 (137)
24 1f4p_A Flavodoxin; electron tr 99.9 5.4E-24 1.9E-28 154.9 10.8 140 4-194 2-145 (147)
25 3svl_A Protein YIEF; E. coli C 99.9 6.6E-24 2.3E-28 161.5 10.2 178 3-200 5-187 (193)
26 2ohh_A Type A flavoprotein FPR 99.9 1.2E-22 4E-27 170.3 13.8 147 3-197 257-403 (404)
27 2hpv_A FMN-dependent NADH-azor 99.9 1.2E-22 4.1E-27 156.0 12.8 141 1-144 1-177 (208)
28 1czn_A Flavodoxin; FMN binding 99.9 5.2E-22 1.8E-26 147.7 15.4 161 4-196 2-167 (169)
29 3s2y_A Chromate reductase; ura 99.8 9E-25 3.1E-29 167.0 0.0 177 4-201 8-189 (199)
30 1t5b_A Acyl carrier protein ph 99.9 7.1E-22 2.4E-26 150.6 14.5 142 1-144 1-171 (201)
31 1t0i_A YLR011WP; FMN binding p 99.9 1.1E-22 3.8E-27 154.2 9.0 132 4-143 2-149 (191)
32 1obo_A Flavodoxin; electron tr 99.9 3.2E-21 1.1E-25 143.4 16.6 160 4-196 3-167 (169)
33 2wc1_A Flavodoxin; electron tr 99.9 1.2E-21 4E-26 147.7 12.4 164 1-197 1-177 (182)
34 1ykg_A SIR-FP, sulfite reducta 99.9 1.1E-21 3.7E-26 145.9 11.0 146 2-198 9-155 (167)
35 1ag9_A Flavodoxin; electron tr 99.9 1.1E-20 3.9E-25 141.4 16.2 162 4-197 2-168 (175)
36 3p0r_A Azoreductase; structura 99.9 3E-22 1E-26 154.4 7.7 143 1-144 3-180 (211)
37 3lcm_A SMU.1420, putative oxid 99.9 2.6E-21 8.9E-26 147.5 12.7 137 4-145 2-161 (196)
38 1e5d_A Rubredoxin\:oxygen oxid 99.9 5.5E-21 1.9E-25 160.0 15.6 147 3-199 253-399 (402)
39 1d4a_A DT-diaphorase, quinone 99.9 5.5E-22 1.9E-26 158.5 8.6 117 1-119 1-151 (273)
40 3f2v_A General stress protein 99.9 3.7E-21 1.3E-25 145.9 12.2 134 1-146 1-149 (192)
41 1yob_A Flavodoxin 2, flavodoxi 99.9 7.2E-21 2.5E-25 143.0 13.7 163 3-195 1-174 (179)
42 1ycg_A Nitric oxide reductase; 99.9 3.4E-21 1.2E-25 161.1 13.2 145 3-197 252-397 (398)
43 3r6w_A FMN-dependent NADH-azor 99.9 2.2E-21 7.4E-26 149.6 10.8 144 1-145 1-182 (212)
44 4dik_A Flavoprotein; TM0755, e 99.9 3.4E-21 1.2E-25 161.8 12.4 141 3-193 266-409 (410)
45 2fcr_A Flavodoxin; electron tr 99.8 2.6E-20 8.8E-25 139.2 13.5 162 4-196 1-171 (173)
46 3u7i_A FMN-dependent NADH-azor 99.8 9.4E-21 3.2E-25 147.1 10.7 172 2-196 4-213 (223)
47 2amj_A Modulator of drug activ 99.8 2.4E-19 8.1E-24 137.4 16.4 127 3-145 13-177 (204)
48 2hna_A Protein MIOC, flavodoxi 99.8 3.8E-21 1.3E-25 140.0 5.2 141 1-196 1-146 (147)
49 3tem_A Ribosyldihydronicotinam 99.8 3.8E-20 1.3E-24 144.1 9.9 114 4-119 3-150 (228)
50 2bmv_A Flavodoxin; electron tr 99.8 1.1E-19 3.6E-24 134.6 11.5 156 1-194 1-161 (164)
51 3edo_A Flavoprotein, putative 99.8 1.2E-20 4E-25 138.1 5.6 128 1-142 2-137 (151)
52 3rpe_A MDAB, modulator of drug 99.8 5.4E-19 1.8E-23 136.2 15.0 129 2-146 25-191 (218)
53 3klb_A Putative flavoprotein; 99.8 1.9E-19 6.4E-24 133.2 11.9 124 2-142 4-139 (162)
54 4ici_A Putative flavoprotein; 99.8 9.4E-19 3.2E-23 130.5 12.1 124 2-142 13-148 (171)
55 1bvy_F Protein (cytochrome P45 99.8 3.6E-19 1.2E-23 134.9 8.6 144 3-197 22-167 (191)
56 4gi5_A Quinone reductase; prot 99.8 7.2E-19 2.5E-23 140.3 9.7 115 3-119 23-178 (280)
57 3ha2_A NADPH-quinone reductase 99.7 5E-17 1.7E-21 121.6 14.0 123 4-146 2-141 (177)
58 3l9w_A Glutathione-regulated p 99.7 9.5E-18 3.3E-22 141.1 10.6 160 3-198 237-410 (413)
59 3hr4_A Nitric oxide synthase, 99.7 3.1E-15 1.1E-19 115.1 14.2 119 3-145 41-160 (219)
60 2bpo_A CPR, P450R, NADPH-cytoc 99.6 4.5E-15 1.5E-19 131.9 13.2 149 2-198 49-200 (682)
61 2xod_A NRDI protein, NRDI; fla 99.5 2.2E-13 7.5E-18 95.3 8.7 116 5-194 1-118 (119)
62 3qe2_A CPR, P450R, NADPH--cyto 99.4 6.9E-13 2.4E-17 116.7 11.5 122 3-144 19-143 (618)
63 1tll_A Nitric-oxide synthase, 99.4 8.1E-12 2.8E-16 111.1 14.6 146 4-198 13-199 (688)
64 1rlj_A NRDI protein; flavoprot 99.1 6.3E-11 2.2E-15 84.9 6.3 117 4-194 10-129 (139)
65 3n3a_C Protein NRDI; ribonucle 98.9 2E-09 7E-14 77.5 5.0 121 6-194 24-150 (153)
66 2kyr_A Fructose-like phosphotr 97.4 0.00024 8.1E-09 48.2 5.3 84 1-116 4-89 (111)
67 2m1z_A LMO0427 protein; homolo 97.4 0.00028 9.7E-09 47.5 5.0 84 1-116 1-86 (106)
68 1e2b_A Enzyme IIB-cellobiose; 96.5 0.0076 2.6E-07 40.5 6.2 62 2-85 3-64 (106)
69 1tvm_A PTS system, galactitol- 96.5 0.0054 1.8E-07 41.7 5.4 58 2-81 21-80 (113)
70 2r4q_A Phosphotransferase syst 95.6 0.012 4.1E-07 39.5 3.9 80 4-116 4-85 (106)
71 2r48_A Phosphotransferase syst 95.5 0.019 6.6E-07 38.4 4.6 80 4-116 4-85 (106)
72 3czc_A RMPB; alpha/beta sandwi 95.4 0.013 4.5E-07 39.6 3.6 57 2-80 18-77 (110)
73 3nbm_A PTS system, lactose-spe 95.3 0.039 1.3E-06 37.1 5.5 77 4-115 8-86 (108)
74 3rht_A (gatase1)-like protein; 95.1 0.05 1.7E-06 42.4 6.4 73 2-96 4-76 (259)
75 3kkl_A Probable chaperone prot 95.0 0.052 1.8E-06 42.0 6.2 107 2-116 3-140 (244)
76 2l2q_A PTS system, cellobiose- 94.8 0.028 9.6E-07 37.8 3.8 56 4-80 6-61 (109)
77 4gud_A Imidazole glycerol phos 93.2 0.17 5.8E-06 37.8 5.7 46 1-76 1-46 (211)
78 1u9c_A APC35852; structural ge 92.8 0.17 5.7E-06 38.2 5.2 107 1-116 4-131 (224)
79 3l3b_A ES1 family protein; ssg 92.1 0.25 8.7E-06 38.0 5.5 41 1-42 22-65 (242)
80 1vkr_A Mannitol-specific PTS s 92.0 0.17 6E-06 34.8 4.1 35 2-37 13-48 (125)
81 4e5v_A Putative THUA-like prot 91.2 1.3 4.3E-05 34.9 8.8 76 4-96 6-83 (281)
82 4e08_A DJ-1 beta; flavodoxin-l 91.1 0.12 4.2E-06 37.9 2.7 100 1-116 4-109 (190)
83 3ot1_A 4-methyl-5(B-hydroxyeth 91.0 0.11 3.8E-06 38.8 2.4 102 1-117 8-114 (208)
84 3r6d_A NAD-dependent epimerase 90.6 0.61 2.1E-05 34.6 6.2 43 66-118 69-111 (221)
85 3qvo_A NMRA family protein; st 90.3 1.3 4.4E-05 33.2 7.9 88 2-97 23-113 (236)
86 3n7t_A Macrophage binding prot 90.2 0.57 2E-05 36.1 5.8 107 2-116 9-147 (247)
87 2ab0_A YAJL; DJ-1/THIJ superfa 89.8 0.23 8E-06 36.9 3.2 104 1-117 1-109 (205)
88 3m3p_A Glutamine amido transfe 89.5 0.57 1.9E-05 36.2 5.3 54 3-79 4-58 (250)
89 4gdh_A DJ-1, uncharacterized p 89.0 0.26 8.8E-06 36.5 3.0 106 2-116 4-116 (194)
90 3efe_A THIJ/PFPI family protei 88.3 0.81 2.8E-05 34.2 5.4 101 2-116 5-114 (212)
91 1qv9_A F420-dependent methylen 87.5 4.8 0.00016 30.8 8.9 93 1-116 2-100 (283)
92 2rk3_A Protein DJ-1; parkinson 87.2 0.65 2.2E-05 34.1 4.1 101 1-116 2-108 (197)
93 2pv7_A T-protein [includes: ch 87.1 3.1 0.00011 32.6 8.4 67 1-97 20-86 (298)
94 1t0b_A THUA-like protein; treh 86.7 3.5 0.00012 31.7 8.3 60 20-96 34-94 (252)
95 1rw7_A YDR533CP; alpha-beta sa 86.3 1.7 6E-05 33.0 6.3 42 68-116 96-140 (243)
96 3l4e_A Uncharacterized peptida 86.2 1.3 4.4E-05 33.1 5.4 23 66-92 75-97 (206)
97 1ka9_H Imidazole glycerol phos 85.1 1.6 5.5E-05 32.1 5.4 48 1-78 1-48 (200)
98 3ius_A Uncharacterized conserv 85.0 1.9 6.5E-05 33.0 6.0 86 1-97 4-89 (286)
99 1wl8_A GMP synthase [glutamine 84.3 5.9 0.0002 28.6 8.2 34 1-42 1-34 (189)
100 2iuf_A Catalase; oxidoreductas 84.3 3.3 0.00011 36.7 7.7 93 3-116 530-641 (688)
101 3f5d_A Protein YDEA; unknow pr 83.7 0.99 3.4E-05 33.6 3.7 97 1-116 2-102 (206)
102 1fy2_A Aspartyl dipeptidase; s 83.1 1.3 4.5E-05 33.6 4.2 25 65-93 74-98 (229)
103 1vhq_A Enhancing lycopene bios 82.7 2.2 7.4E-05 32.2 5.4 40 2-42 6-48 (232)
104 2qv7_A Diacylglycerol kinase D 82.3 3.5 0.00012 32.9 6.7 40 1-41 23-64 (337)
105 2a9v_A GMP synthase; structura 81.9 2.2 7.7E-05 31.7 5.1 49 1-77 13-61 (212)
106 4huj_A Uncharacterized protein 81.6 1.4 4.7E-05 33.0 3.8 78 2-96 23-101 (220)
107 3ew7_A LMO0794 protein; Q8Y8U8 81.2 4 0.00014 29.7 6.3 100 4-116 2-104 (221)
108 3l7n_A Putative uncharacterize 81.0 4.2 0.00014 30.7 6.5 51 4-77 2-52 (236)
109 1n57_A Chaperone HSP31, protei 80.8 5.1 0.00017 31.4 7.0 42 68-116 143-187 (291)
110 1oi4_A Hypothetical protein YH 79.8 2.6 9E-05 30.7 4.8 100 1-116 22-127 (193)
111 4hcj_A THIJ/PFPI domain protei 79.2 3.4 0.00011 29.9 5.1 99 3-116 8-110 (177)
112 3noq_A THIJ/PFPI family protei 79.2 1.8 6.1E-05 32.8 3.8 88 1-96 4-93 (231)
113 2gk3_A Putative cytoplasmic pr 79.1 3 0.0001 32.0 5.1 14 65-78 72-85 (256)
114 3m2p_A UDP-N-acetylglucosamine 79.0 17 0.00056 28.1 9.6 73 1-82 1-74 (311)
115 4eg0_A D-alanine--D-alanine li 78.6 7.1 0.00024 30.6 7.3 42 1-43 12-56 (317)
116 3uk7_A Class I glutamine amido 78.3 2.2 7.4E-05 35.0 4.3 38 2-42 12-49 (396)
117 3fse_A Two-domain protein cont 78.2 2.4 8.2E-05 34.6 4.4 101 1-116 9-114 (365)
118 2iuy_A Avigt4, glycosyltransfe 77.3 2.8 9.5E-05 32.9 4.6 39 3-42 4-57 (342)
119 3h2s_A Putative NADH-flavin re 76.6 5 0.00017 29.3 5.6 100 4-116 2-106 (224)
120 3c24_A Putative oxidoreductase 76.2 5.3 0.00018 30.9 5.9 79 1-97 10-88 (286)
121 2khp_A Glutaredoxin; thioredox 76.1 5.2 0.00018 24.8 4.8 37 1-42 4-40 (92)
122 2h78_A Hibadh, 3-hydroxyisobut 75.3 6.6 0.00023 30.5 6.2 115 3-145 4-122 (302)
123 3g0o_A 3-hydroxyisobutyrate de 74.8 13 0.00044 29.0 7.8 115 3-145 8-127 (303)
124 2nv0_A Glutamine amidotransfer 74.8 7.7 0.00026 28.1 6.1 11 67-77 35-45 (196)
125 1qdl_B Protein (anthranilate s 74.7 21 0.00073 25.7 9.4 50 5-80 4-56 (195)
126 3s40_A Diacylglycerol kinase; 74.6 7.6 0.00026 30.5 6.4 39 2-41 8-48 (304)
127 3cne_A Putative protease I; st 74.5 9.2 0.00031 27.1 6.4 97 1-116 1-113 (175)
128 3ewn_A THIJ/PFPI family protei 74.2 6.1 0.00021 30.3 5.6 100 1-115 22-125 (253)
129 3d54_D Phosphoribosylformylgly 73.9 4.8 0.00016 29.5 4.8 34 1-40 1-35 (213)
130 3doj_A AT3G25530, dehydrogenas 73.7 17 0.00059 28.4 8.3 117 3-146 22-141 (310)
131 1iow_A DD-ligase, DDLB, D-ALA\ 73.7 4.3 0.00015 31.4 4.7 42 1-43 1-45 (306)
132 3dhn_A NAD-dependent epimerase 73.5 23 0.0008 25.6 8.9 89 2-97 4-100 (227)
133 3gt0_A Pyrroline-5-carboxylate 71.7 2.2 7.6E-05 32.3 2.5 80 1-97 1-84 (247)
134 2vpi_A GMP synthase; guanine m 71.6 11 0.00038 28.1 6.4 33 3-41 25-57 (218)
135 3qha_A Putative oxidoreductase 71.3 33 0.0011 26.5 9.9 116 3-146 16-131 (296)
136 3pdu_A 3-hydroxyisobutyrate de 71.0 18 0.00062 27.8 7.8 117 1-146 1-121 (287)
137 1o1y_A Conserved hypothetical 70.9 8.5 0.00029 29.1 5.7 53 4-79 14-67 (239)
138 3uk7_A Class I glutamine amido 70.9 4.8 0.00016 32.9 4.6 39 1-42 204-242 (396)
139 3e8x_A Putative NAD-dependent 70.5 15 0.0005 27.1 6.9 63 18-82 32-96 (236)
140 2qs7_A Uncharacterized protein 70.0 6.8 0.00023 27.2 4.6 40 1-41 6-45 (144)
141 3mc3_A DSRE/DSRF-like family p 68.8 11 0.00039 25.6 5.5 42 1-43 14-57 (134)
142 3r5x_A D-alanine--D-alanine li 68.3 12 0.00042 28.9 6.3 39 4-43 5-46 (307)
143 1yb4_A Tartronic semialdehyde 67.9 33 0.0011 26.2 8.7 74 3-94 4-77 (295)
144 3ej6_A Catalase-3; heme, hydro 67.6 13 0.00044 33.0 6.6 92 2-116 537-639 (688)
145 2gek_A Phosphatidylinositol ma 66.6 8 0.00027 30.8 5.0 40 3-43 21-63 (406)
146 3ups_A Iojap-like protein; PSI 66.0 13 0.00043 25.8 5.2 49 14-86 17-65 (136)
147 3abi_A Putative uncharacterize 65.1 5 0.00017 32.3 3.5 81 4-95 18-100 (365)
148 3c48_A Predicted glycosyltrans 65.0 7.4 0.00025 31.5 4.6 40 1-42 20-69 (438)
149 2klx_A Glutaredoxin; thioredox 64.3 6.7 0.00023 24.2 3.3 36 1-41 4-39 (89)
150 1wwj_A Circadian clock protein 62.9 20 0.00069 23.6 5.4 70 5-97 9-81 (105)
151 3ttv_A Catalase HPII; heme ori 62.1 12 0.0004 33.5 5.4 101 3-118 601-703 (753)
152 2id1_A Hypothetical protein; a 61.7 14 0.00047 25.4 4.7 48 16-87 3-50 (130)
153 3ic4_A Glutaredoxin (GRX-1); s 60.9 7 0.00024 24.2 2.9 37 1-42 10-46 (92)
154 3k96_A Glycerol-3-phosphate de 60.8 37 0.0013 27.3 7.9 26 66-97 95-120 (356)
155 3ouz_A Biotin carboxylase; str 60.3 22 0.00076 29.2 6.7 33 1-40 5-37 (446)
156 1u0t_A Inorganic polyphosphate 59.7 8.8 0.0003 30.2 3.9 36 2-38 4-39 (307)
157 2o5a_A BH1328 protein; BHR21, 59.4 13 0.00045 25.3 4.2 48 16-87 3-50 (125)
158 2x6q_A Trehalose-synthase TRET 58.8 16 0.00053 29.4 5.4 39 3-42 41-80 (416)
159 3llv_A Exopolyphosphatase-rela 57.7 5 0.00017 27.2 1.9 71 2-79 6-79 (141)
160 3ggo_A Prephenate dehydrogenas 56.1 71 0.0024 25.0 11.6 69 3-82 34-106 (314)
161 2wmy_A WZB, putative acid phos 56.0 19 0.00064 25.1 4.8 77 1-80 7-91 (150)
162 4gbj_A 6-phosphogluconate dehy 55.9 31 0.001 26.9 6.5 119 1-147 4-124 (297)
163 2vrn_A Protease I, DR1199; cys 55.6 17 0.0006 25.9 4.7 100 3-116 10-117 (190)
164 2g2c_A Putative molybdenum cof 55.5 14 0.0005 26.2 4.2 39 1-40 4-50 (167)
165 3ic5_A Putative saccharopine d 55.4 5.8 0.0002 25.6 1.9 15 67-81 66-80 (118)
166 2ahr_A Putative pyrroline carb 54.9 13 0.00046 27.9 4.2 67 4-81 5-71 (259)
167 3e48_A Putative nucleoside-dip 54.8 21 0.00071 27.1 5.3 46 66-117 61-108 (289)
168 1gpw_B Amidotransferase HISH; 54.7 16 0.00054 26.5 4.4 30 4-39 2-36 (201)
169 3ax6_A Phosphoribosylaminoimid 54.6 21 0.00073 28.5 5.5 35 2-43 1-35 (380)
170 2fek_A Low molecular weight pr 54.2 20 0.0007 25.5 4.8 77 1-80 21-105 (167)
171 4e12_A Diketoreductase; oxidor 53.7 24 0.0008 27.2 5.5 33 3-42 5-37 (283)
172 3tri_A Pyrroline-5-carboxylate 53.6 31 0.0011 26.5 6.1 68 3-81 4-74 (280)
173 1ulz_A Pyruvate carboxylase N- 53.5 41 0.0014 27.6 7.2 33 1-40 1-33 (451)
174 3fro_A GLGA glycogen synthase; 53.4 14 0.00049 29.5 4.3 37 4-41 4-44 (439)
175 2gf9_A RAS-related protein RAB 53.1 54 0.0019 22.7 7.4 48 65-116 89-136 (189)
176 3oh8_A Nucleoside-diphosphate 52.8 53 0.0018 27.6 7.9 63 4-80 149-211 (516)
177 1w4r_A Thymidine kinase; type 52.7 25 0.00085 25.9 5.1 100 2-116 19-126 (195)
178 1qhx_A CPT, protein (chloramph 52.5 14 0.00049 25.7 3.8 28 1-29 1-29 (178)
179 2k8s_A Thioredoxin; dimer, str 52.3 34 0.0012 20.2 5.4 38 4-42 3-40 (80)
180 1t1v_A SH3BGRL3, SH3 domain-bi 52.3 28 0.00095 21.6 4.8 37 2-42 1-42 (93)
181 3ged_A Short-chain dehydrogena 52.0 23 0.0008 26.9 5.1 36 2-42 1-36 (247)
182 3l6d_A Putative oxidoreductase 52.0 36 0.0012 26.5 6.3 115 3-145 10-126 (306)
183 1nho_A Probable thioredoxin; b 51.5 8.3 0.00028 23.0 2.1 40 1-42 1-43 (85)
184 3ju3_A Probable 2-oxoacid ferr 51.1 36 0.0012 22.5 5.4 67 5-91 16-85 (118)
185 1f0k_A MURG, UDP-N-acetylgluco 50.3 23 0.00077 27.7 5.0 38 3-42 7-44 (364)
186 3g1w_A Sugar ABC transporter; 49.0 82 0.0028 23.7 8.3 41 3-44 5-46 (305)
187 3obb_A Probable 3-hydroxyisobu 48.2 95 0.0032 24.1 8.3 121 2-147 3-124 (300)
188 3gg2_A Sugar dehydrogenase, UD 48.1 1.1E+02 0.0038 25.3 9.0 16 67-82 75-90 (450)
189 4ffl_A PYLC; amino acid, biosy 48.0 17 0.00058 28.9 3.9 34 2-42 1-34 (363)
190 3fwz_A Inner membrane protein 47.6 11 0.00039 25.5 2.5 61 21-82 20-83 (140)
191 3lwz_A 3-dehydroquinate dehydr 47.2 72 0.0025 22.4 10.2 116 2-135 7-150 (153)
192 3lzd_A DPH2; diphthamide biosy 47.2 35 0.0012 27.8 5.6 43 3-46 265-308 (378)
193 2c92_A 6,7-dimethyl-8-ribityll 47.1 41 0.0014 23.9 5.3 39 4-43 19-59 (160)
194 2fgx_A Putative thioredoxin; N 46.6 31 0.001 22.6 4.3 37 5-42 31-68 (107)
195 2bcg_Y Protein YP2, GTP-bindin 46.5 74 0.0025 22.4 8.7 48 65-116 75-122 (206)
196 3rss_A Putative uncharacterize 46.4 46 0.0016 28.2 6.4 88 3-97 53-149 (502)
197 1e4e_A Vancomycin/teicoplanin 46.0 36 0.0012 26.8 5.6 41 1-42 1-45 (343)
198 2iw1_A Lipopolysaccharide core 45.8 18 0.0006 28.3 3.7 37 4-41 2-40 (374)
199 3lkv_A Uncharacterized conserv 45.6 64 0.0022 24.8 6.8 39 3-42 141-179 (302)
200 2bon_A Lipid kinase; DAG kinas 45.4 41 0.0014 26.6 5.7 38 2-41 29-66 (332)
201 3uow_A GMP synthetase; structu 45.3 37 0.0013 29.2 5.7 32 3-41 8-40 (556)
202 2wja_A Putative acid phosphata 45.2 25 0.00087 25.0 4.1 77 1-80 25-109 (168)
203 2raf_A Putative dinucleotide-b 45.2 44 0.0015 24.3 5.6 58 4-97 21-78 (209)
204 3ay3_A NAD-dependent epimerase 44.8 7 0.00024 29.5 1.1 72 1-81 1-74 (267)
205 2lqo_A Putative glutaredoxin R 44.6 36 0.0012 21.4 4.4 37 1-42 1-38 (92)
206 3soz_A ORF 245 protein, cytopl 44.5 22 0.00076 27.2 3.9 46 20-80 35-80 (248)
207 3hgm_A Universal stress protei 44.4 23 0.00078 23.6 3.7 41 1-43 1-41 (147)
208 2r60_A Glycosyl transferase, g 44.3 25 0.00086 29.0 4.5 39 3-42 8-60 (499)
209 2ew2_A 2-dehydropantoate 2-red 43.9 18 0.00063 27.8 3.4 24 68-97 72-95 (316)
210 4ezb_A Uncharacterized conserv 43.6 52 0.0018 25.8 6.1 69 1-82 23-99 (317)
211 1yj8_A Glycerol-3-phosphate de 43.4 49 0.0017 26.4 6.0 26 66-97 99-124 (375)
212 1rzu_A Glycogen synthase 1; gl 43.3 27 0.00092 28.6 4.5 37 4-41 2-43 (485)
213 1jx7_A Hypothetical protein YC 42.8 32 0.0011 22.1 4.1 39 3-42 2-44 (117)
214 2i0f_A 6,7-dimethyl-8-ribityll 42.3 78 0.0027 22.3 6.1 39 4-43 14-53 (157)
215 3pef_A 6-phosphogluconate dehy 42.0 55 0.0019 25.0 5.9 115 4-145 3-120 (287)
216 1xea_A Oxidoreductase, GFO/IDH 41.7 35 0.0012 26.6 4.8 14 69-82 62-75 (323)
217 2qzs_A Glycogen synthase; glyc 41.6 26 0.0009 28.7 4.2 37 4-41 2-43 (485)
218 2jl1_A Triphenylmethane reduct 41.4 95 0.0032 23.1 7.2 87 4-96 2-94 (287)
219 3tqt_A D-alanine--D-alanine li 41.0 48 0.0016 26.7 5.6 39 4-43 6-47 (372)
220 3re1_A Uroporphyrinogen-III sy 41.0 55 0.0019 24.8 5.7 24 67-97 63-86 (269)
221 3oti_A CALG3; calicheamicin, T 40.8 16 0.00055 29.2 2.7 36 3-40 21-56 (398)
222 2a5j_A RAS-related protein RAB 40.7 89 0.003 21.7 6.7 48 65-116 88-135 (191)
223 3fz4_A Putative arsenate reduc 40.5 52 0.0018 21.8 4.9 34 6-44 5-39 (120)
224 2ywd_A Glutamine amidotransfer 40.5 35 0.0012 24.2 4.3 47 1-78 1-47 (191)
225 3k3p_A D-alanine--D-alanine li 40.0 48 0.0016 26.8 5.5 39 3-42 38-79 (383)
226 2fg5_A RAB-22B, RAS-related pr 39.9 92 0.0032 21.6 7.4 48 65-116 90-137 (192)
227 2d1p_B TUSC, hypothetical UPF0 39.8 42 0.0014 22.1 4.3 40 2-43 1-43 (119)
228 3r75_A Anthranilate/para-amino 39.4 1.1E+02 0.0037 26.8 7.9 50 4-81 448-498 (645)
229 2b99_A Riboflavin synthase; lu 39.3 15 0.00052 26.0 2.0 39 1-42 1-41 (156)
230 3rh0_A Arsenate reductase; oxi 39.1 94 0.0032 21.5 9.4 78 2-81 20-103 (148)
231 2z04_A Phosphoribosylaminoimid 38.8 30 0.001 27.4 4.0 35 2-43 1-35 (365)
232 4dkx_A RAS-related protein RAB 38.8 69 0.0024 23.4 5.8 47 65-115 80-126 (216)
233 1g16_A RAS-related protein SEC 38.4 87 0.003 20.9 6.8 48 65-116 70-117 (170)
234 4e21_A 6-phosphogluconate dehy 38.3 61 0.0021 26.0 5.8 115 3-146 23-141 (358)
235 1ego_A Glutaredoxin; electron 38.3 37 0.0013 20.1 3.6 38 4-41 2-39 (85)
236 4hkt_A Inositol 2-dehydrogenas 38.2 21 0.00072 28.0 3.0 14 70-83 63-76 (331)
237 2oil_A CATX-8, RAS-related pro 38.1 98 0.0033 21.4 6.6 47 65-115 92-138 (193)
238 3db2_A Putative NADPH-dependen 38.1 40 0.0014 26.6 4.7 24 69-94 65-88 (354)
239 2ywj_A Glutamine amidotransfer 38.0 47 0.0016 23.5 4.7 11 67-77 34-44 (186)
240 3cwc_A Putative glycerate kina 37.9 27 0.00094 28.6 3.6 42 1-43 3-47 (383)
241 3s2u_A UDP-N-acetylglucosamine 37.8 27 0.00091 27.9 3.6 37 1-39 1-37 (365)
242 3i12_A D-alanine-D-alanine lig 37.6 62 0.0021 25.8 5.7 42 1-43 1-46 (364)
243 2an1_A Putative kinase; struct 37.6 22 0.00074 27.5 2.9 36 2-38 5-40 (292)
244 2jmk_A Hypothetical protein TA 37.4 66 0.0023 20.6 4.5 34 3-37 75-109 (111)
245 3ezy_A Dehydrogenase; structur 37.1 26 0.0009 27.6 3.4 14 70-83 64-77 (344)
246 4fzr_A SSFS6; structural genom 37.1 18 0.00063 28.9 2.5 38 1-41 15-52 (398)
247 1t2a_A GDP-mannose 4,6 dehydra 36.6 22 0.00076 28.2 2.9 35 1-41 23-57 (375)
248 3ia7_A CALG4; glycosysltransfe 36.6 77 0.0026 24.9 6.2 37 2-40 4-40 (402)
249 2h3h_A Sugar ABC transporter, 36.6 1.4E+02 0.0047 22.6 7.5 39 3-42 2-40 (313)
250 3exr_A RMPD (hexulose-6-phosph 36.4 16 0.00056 27.2 1.9 30 70-99 189-219 (221)
251 3gkx_A Putative ARSC family re 36.4 58 0.002 21.6 4.6 34 6-44 6-40 (120)
252 1zbd_A Rabphilin-3A; G protein 36.1 1.1E+02 0.0037 21.3 8.0 46 67-116 77-122 (203)
253 2i76_A Hypothetical protein; N 36.1 16 0.00053 28.1 1.8 15 68-82 56-70 (276)
254 1vpd_A Tartronate semialdehyde 36.0 17 0.00059 27.9 2.1 15 66-80 57-71 (299)
255 2dum_A Hypothetical protein PH 35.8 69 0.0024 21.8 5.2 39 2-42 5-43 (170)
256 1jmv_A USPA, universal stress 35.8 51 0.0018 21.6 4.3 38 1-41 1-39 (141)
257 1t57_A Conserved protein MTH16 35.7 30 0.001 25.6 3.1 27 7-34 25-53 (206)
258 3e5n_A D-alanine-D-alanine lig 35.7 64 0.0022 26.0 5.6 39 3-42 23-64 (386)
259 2a33_A Hypothetical protein; s 35.5 33 0.0011 25.6 3.4 32 2-34 13-47 (215)
260 4fle_A Esterase; structural ge 35.4 36 0.0012 23.9 3.7 39 1-42 1-43 (202)
261 2hy5_B Intracellular sulfur ox 35.3 73 0.0025 21.6 5.0 41 2-43 5-47 (136)
262 3cpj_B GTP-binding protein YPT 35.1 1.2E+02 0.0042 21.6 7.5 47 65-115 80-126 (223)
263 3u9t_A MCC alpha, methylcroton 35.1 65 0.0022 28.4 5.8 33 1-40 27-59 (675)
264 1z0j_A RAB-22, RAS-related pro 34.9 96 0.0033 20.6 5.8 48 65-116 73-120 (170)
265 3idf_A USP-like protein; unive 34.8 43 0.0015 21.9 3.8 47 17-80 65-111 (138)
266 3gpi_A NAD-dependent epimerase 34.8 95 0.0033 23.2 6.2 33 3-42 4-36 (286)
267 2i87_A D-alanine-D-alanine lig 34.7 66 0.0022 25.5 5.4 41 1-42 1-45 (364)
268 2g5c_A Prephenate dehydrogenas 34.5 67 0.0023 24.3 5.3 16 66-81 57-73 (281)
269 2z08_A Universal stress protei 34.4 44 0.0015 21.9 3.8 40 1-42 1-40 (137)
270 1q77_A Hypothetical protein AQ 34.4 60 0.002 21.2 4.5 38 1-41 3-41 (138)
271 2fn9_A Ribose ABC transporter, 34.2 1.4E+02 0.0048 22.1 8.4 40 1-41 1-41 (290)
272 1xgk_A Nitrogen metabolite rep 34.1 89 0.003 24.6 6.1 32 66-97 69-100 (352)
273 1jvn_A Glutamine, bifunctional 34.1 47 0.0016 28.5 4.7 32 2-39 4-35 (555)
274 1sy7_A Catalase 1; heme oxidat 33.9 37 0.0013 30.3 4.0 100 3-116 535-637 (715)
275 2h2w_A Homoserine O-succinyltr 33.8 89 0.003 24.7 5.9 84 4-96 49-143 (312)
276 3tkl_A RAS-related protein RAB 33.7 80 0.0027 21.8 5.3 48 65-116 83-130 (196)
277 1mjh_A Protein (ATP-binding do 33.4 73 0.0025 21.4 4.9 40 1-42 4-43 (162)
278 3h75_A Periplasmic sugar-bindi 33.4 1.6E+02 0.0056 22.6 7.9 38 3-41 4-43 (350)
279 3rsc_A CALG2; TDP, enediyne, s 33.2 23 0.0008 28.3 2.5 37 2-40 20-56 (415)
280 3ojo_A CAP5O; rossmann fold, c 33.1 29 0.001 28.8 3.1 47 20-80 337-384 (431)
281 1gsa_A Glutathione synthetase; 32.9 47 0.0016 25.3 4.2 36 1-42 1-42 (316)
282 2p4q_A 6-phosphogluconate dehy 32.9 1.5E+02 0.0053 24.8 7.6 59 71-145 75-134 (497)
283 1vg8_A RAS-related protein RAB 32.5 1E+02 0.0034 21.5 5.8 52 65-116 75-126 (207)
284 3sc6_A DTDP-4-dehydrorhamnose 32.5 75 0.0026 23.8 5.3 32 4-41 7-38 (287)
285 2w70_A Biotin carboxylase; lig 32.3 24 0.00081 29.0 2.4 33 1-40 1-33 (449)
286 1ky3_A GTP-binding protein YPT 32.3 1.2E+02 0.0039 20.5 6.6 51 66-116 77-127 (182)
287 3egc_A Putative ribose operon 32.3 1.5E+02 0.0053 21.9 7.8 38 4-42 10-48 (291)
288 1tq8_A Hypothetical protein RV 32.2 74 0.0025 21.8 4.8 50 17-82 80-131 (163)
289 2yq5_A D-isomer specific 2-hyd 32.1 1E+02 0.0035 24.6 6.1 13 65-77 40-52 (343)
290 3pu6_A Uncharacterized protein 32.0 1.3E+02 0.0044 21.0 6.3 67 1-90 1-74 (157)
291 3rdw_A Putative arsenate reduc 31.9 40 0.0014 22.4 3.2 34 6-44 7-41 (121)
292 3uug_A Multiple sugar-binding 31.8 1.7E+02 0.0057 22.2 8.0 37 3-40 4-41 (330)
293 1via_A Shikimate kinase; struc 31.7 36 0.0012 23.6 3.1 27 1-28 3-29 (175)
294 3st7_A Capsular polysaccharide 31.6 1.1E+02 0.0038 23.9 6.3 54 4-80 2-56 (369)
295 4fu0_A D-alanine--D-alanine li 31.5 85 0.0029 24.8 5.6 41 1-42 1-45 (357)
296 1x3s_A RAS-related protein RAB 31.5 1.2E+02 0.0042 20.7 6.0 48 65-115 82-129 (195)
297 3n8k_A 3-dehydroquinate dehydr 31.1 1.2E+02 0.0043 21.6 5.6 77 4-96 30-119 (172)
298 3k5i_A Phosphoribosyl-aminoimi 31.1 50 0.0017 26.8 4.2 32 3-42 25-56 (403)
299 3va7_A KLLA0E08119P; carboxyla 31.1 73 0.0025 30.3 5.7 33 1-40 30-62 (1236)
300 3er6_A Putative transcriptiona 31.0 21 0.00073 26.1 1.8 44 66-116 70-117 (209)
301 1n7h_A GDP-D-mannose-4,6-dehyd 31.0 31 0.0011 27.3 2.9 35 1-41 27-61 (381)
302 2orv_A Thymidine kinase; TP4A 31.0 93 0.0032 23.5 5.3 100 2-115 18-124 (234)
303 4f3y_A DHPR, dihydrodipicolina 31.0 1.2E+02 0.0039 23.4 6.0 39 66-118 69-107 (272)
304 3bed_A PTS system, IIA compone 30.8 1.3E+02 0.0043 20.4 7.4 74 1-88 4-78 (142)
305 4es6_A Uroporphyrinogen-III sy 30.7 60 0.002 24.3 4.4 25 66-97 54-78 (254)
306 3oy2_A Glycosyltransferase B73 30.7 91 0.0031 24.6 5.7 37 4-42 2-40 (413)
307 1ek6_A UDP-galactose 4-epimera 30.6 32 0.0011 26.7 2.9 34 1-40 1-34 (348)
308 2zcu_A Uncharacterized oxidore 30.5 88 0.003 23.3 5.4 81 16-97 8-92 (286)
309 3u80_A 3-dehydroquinate dehydr 30.5 78 0.0027 22.2 4.5 75 2-92 4-91 (151)
310 3c5y_A Ribose/galactose isomer 30.4 41 0.0014 25.4 3.2 35 4-41 21-56 (231)
311 3rg8_A Phosphoribosylaminoimid 30.4 63 0.0021 22.9 4.0 33 1-36 1-33 (159)
312 3cph_A RAS-related protein SEC 30.1 1.4E+02 0.0048 20.8 6.6 48 65-116 87-134 (213)
313 3hbl_A Pyruvate carboxylase; T 30.1 2.6E+02 0.009 26.3 9.2 34 1-41 3-36 (1150)
314 3qsg_A NAD-binding phosphogluc 29.8 29 0.00099 27.1 2.5 18 65-82 78-95 (312)
315 2b0j_A 5,10-methenyltetrahydro 29.8 2.1E+02 0.0071 22.7 8.3 31 65-96 136-166 (358)
316 3se7_A VANA; alpha-beta struct 29.8 95 0.0033 24.4 5.6 40 3-43 4-46 (346)
317 3gra_A Transcriptional regulat 29.8 23 0.00079 25.8 1.8 41 68-116 69-110 (202)
318 2iss_D Glutamine amidotransfer 29.8 1.1E+02 0.0037 22.1 5.5 43 4-77 22-64 (208)
319 3dlo_A Universal stress protei 29.6 51 0.0017 22.4 3.5 40 2-42 24-63 (155)
320 3orf_A Dihydropteridine reduct 29.6 41 0.0014 25.0 3.3 37 2-43 21-57 (251)
321 3gj0_A GTP-binding nuclear pro 29.6 83 0.0028 22.5 4.9 33 65-97 82-114 (221)
322 2vdj_A Homoserine O-succinyltr 29.6 96 0.0033 24.3 5.4 84 4-96 37-131 (301)
323 1w85_B Pyruvate dehydrogenase 29.6 96 0.0033 24.3 5.5 66 14-95 210-278 (324)
324 3p2o_A Bifunctional protein fo 29.3 61 0.0021 25.3 4.2 16 65-80 198-213 (285)
325 1g63_A Epidermin modifying enz 29.2 69 0.0023 23.1 4.2 36 1-40 1-37 (181)
326 3mtq_A Putative phosphoenolpyr 29.2 1.5E+02 0.0051 20.8 6.0 75 1-88 20-94 (159)
327 3lfh_A Manxa, phosphotransfera 29.1 1.4E+02 0.0048 20.4 8.7 80 2-92 1-82 (144)
328 2ydy_A Methionine adenosyltran 29.0 35 0.0012 26.1 2.8 34 1-40 1-34 (315)
329 1b0a_A Protein (fold bifunctio 28.9 71 0.0024 25.0 4.5 52 3-80 160-212 (288)
330 2r85_A PURP protein PF1517; AT 28.9 30 0.001 26.8 2.4 21 177-197 237-257 (334)
331 4aoy_A Isocitrate dehydrogenas 28.9 94 0.0032 25.5 5.4 81 4-95 9-105 (402)
332 4dll_A 2-hydroxy-3-oxopropiona 28.8 44 0.0015 26.1 3.4 115 4-146 33-150 (320)
333 3q98_A Transcarbamylase; rossm 28.7 1.8E+02 0.006 23.9 7.0 37 105-142 189-226 (399)
334 3rot_A ABC sugar transporter, 28.4 1.8E+02 0.0063 21.6 7.5 37 4-41 5-42 (297)
335 1y81_A Conserved hypothetical 28.2 1.4E+02 0.0047 20.1 7.8 56 69-145 68-123 (138)
336 3ehe_A UDP-glucose 4-epimerase 28.2 70 0.0024 24.4 4.4 70 3-79 2-72 (313)
337 3fef_A Putative glucosidase LP 28.0 82 0.0028 26.3 5.0 75 4-81 7-86 (450)
338 3pdi_A Nitrogenase MOFE cofact 28.0 1.3E+02 0.0046 25.1 6.4 36 104-147 329-364 (483)
339 1r7h_A NRDH-redoxin; thioredox 28.0 87 0.003 17.7 4.6 34 4-42 2-35 (75)
340 4fyk_A Deoxyribonucleoside 5'- 27.8 52 0.0018 23.1 3.2 32 1-35 1-34 (152)
341 2is8_A Molybdopterin biosynthe 27.8 1.2E+02 0.004 21.2 5.2 73 3-92 2-87 (164)
342 3vps_A TUNA, NAD-dependent epi 27.8 31 0.0011 26.4 2.3 35 2-42 7-41 (321)
343 3fr7_A Putative ketol-acid red 27.8 1E+02 0.0035 26.3 5.5 17 65-81 116-132 (525)
344 1z08_A RAS-related protein RAB 27.8 1.3E+02 0.0046 19.9 5.5 45 67-115 75-119 (170)
345 3nq4_A 6,7-dimethyl-8-ribityll 27.8 1.5E+02 0.0053 20.8 5.7 39 4-43 14-57 (156)
346 2duw_A Putative COA-binding pr 27.6 1.4E+02 0.005 20.1 5.8 56 69-145 69-124 (145)
347 1a4i_A Methylenetetrahydrofola 27.6 97 0.0033 24.4 5.1 52 3-80 166-218 (301)
348 3mw8_A Uroporphyrinogen-III sy 27.5 16 0.00055 27.3 0.5 25 66-97 46-70 (240)
349 1e6c_A Shikimate kinase; phosp 27.1 51 0.0018 22.5 3.2 26 1-28 1-27 (173)
350 1orr_A CDP-tyvelose-2-epimeras 27.1 39 0.0013 26.1 2.8 33 1-40 1-33 (347)
351 1nks_A Adenylate kinase; therm 27.1 1E+02 0.0035 21.2 4.9 35 4-40 2-37 (194)
352 3kbq_A Protein TA0487; structu 27.1 1.7E+02 0.0058 20.8 7.4 75 4-95 5-90 (172)
353 3okp_A GDP-mannose-dependent a 27.0 75 0.0026 24.7 4.5 38 3-43 5-45 (394)
354 2c20_A UDP-glucose 4-epimerase 27.0 40 0.0014 26.0 2.8 34 1-41 1-34 (330)
355 3ohs_X Trans-1,2-dihydrobenzen 26.9 51 0.0017 25.8 3.5 23 70-94 66-88 (334)
356 3ngx_A Bifunctional protein fo 26.7 72 0.0025 24.8 4.1 52 3-80 151-203 (276)
357 2g2q_A Glutaredoxin-2; thiored 26.7 1.2E+02 0.004 20.4 4.5 37 2-41 1-38 (124)
358 3l21_A DHDPS, dihydrodipicolin 26.5 1E+02 0.0034 24.1 5.1 40 69-114 109-148 (304)
359 3kuu_A Phosphoribosylaminoimid 26.5 73 0.0025 22.9 3.8 33 1-36 11-43 (174)
360 3jy6_A Transcriptional regulat 26.4 1.9E+02 0.0066 21.2 9.2 38 4-42 9-47 (276)
361 2vns_A Metalloreductase steap3 26.3 43 0.0015 24.4 2.8 64 4-81 30-94 (215)
362 3q9l_A Septum site-determining 26.2 98 0.0033 22.7 4.9 39 1-42 1-41 (260)
363 2qh8_A Uncharacterized protein 26.1 2.1E+02 0.0071 21.5 6.9 37 3-40 141-177 (302)
364 3l6e_A Oxidoreductase, short-c 26.0 1E+02 0.0035 22.6 4.9 37 1-42 1-37 (235)
365 4a5o_A Bifunctional protein fo 26.0 71 0.0024 25.0 4.0 16 65-80 199-214 (286)
366 2gfq_A UPF0204 protein PH0006; 25.8 1.6E+02 0.0055 23.1 6.0 24 4-27 23-46 (298)
367 1s3c_A Arsenate reductase; ARS 25.8 67 0.0023 22.0 3.5 34 6-44 4-38 (141)
368 2jjm_A Glycosyl transferase, g 25.7 74 0.0025 25.0 4.3 40 1-41 14-53 (394)
369 2y8e_A RAB-protein 6, GH09086P 25.7 1.3E+02 0.0045 20.1 5.2 47 65-115 81-127 (179)
370 3oow_A Phosphoribosylaminoimid 25.6 79 0.0027 22.6 3.8 33 1-36 4-36 (166)
371 3l6u_A ABC-type sugar transpor 25.5 2E+02 0.007 21.2 8.4 38 4-42 10-48 (293)
372 2r6j_A Eugenol synthase 1; phe 25.2 29 0.00098 26.7 1.7 30 65-97 74-103 (318)
373 2c4w_A 3-dehydroquinate dehydr 25.1 1.1E+02 0.0039 21.9 4.6 81 1-98 9-105 (176)
374 2g6b_A RAS-related protein RAB 25.1 1.6E+02 0.0054 19.8 6.1 47 66-116 79-125 (180)
375 2efe_B Small GTP-binding prote 25.0 1.6E+02 0.0055 19.8 7.6 48 65-116 79-126 (181)
376 3otg_A CALG1; calicheamicin, T 24.6 39 0.0013 26.8 2.4 36 4-41 22-57 (412)
377 3dtt_A NADP oxidoreductase; st 24.5 34 0.0012 25.5 1.9 18 65-82 85-102 (245)
378 1g3q_A MIND ATPase, cell divis 24.4 1.2E+02 0.0041 21.9 5.0 39 1-42 1-41 (237)
379 2iyf_A OLED, oleandomycin glyc 24.4 39 0.0013 27.2 2.4 38 3-42 8-45 (430)
380 2l17_A Synarsc, arsenate reduc 24.4 87 0.003 21.1 3.9 27 2-29 4-30 (134)
381 2dzd_A Pyruvate carboxylase; b 24.3 28 0.00097 28.7 1.6 34 1-41 5-38 (461)
382 3jtm_A Formate dehydrogenase, 24.3 1.6E+02 0.0056 23.4 6.0 57 19-81 175-231 (351)
383 1nbw_B Glycerol dehydratase re 24.3 87 0.003 20.9 3.7 36 5-42 8-43 (117)
384 2l69_A Rossmann 2X3 fold prote 24.2 1.3E+02 0.0046 19.1 4.3 32 4-39 2-33 (134)
385 3tw8_B RAS-related protein RAB 24.2 88 0.003 21.1 4.0 47 65-116 76-122 (181)
386 1umd_B E1-beta, 2-OXO acid deh 24.2 1.1E+02 0.0039 23.8 5.1 66 14-95 211-279 (324)
387 1ejb_A Lumazine synthase; anal 24.1 2E+02 0.0067 20.5 6.0 39 4-43 18-60 (168)
388 3h5l_A Putative branched-chain 24.1 2.7E+02 0.0091 22.0 10.1 35 3-39 165-199 (419)
389 2ct6_A SH3 domain-binding glut 24.0 1.5E+02 0.005 19.0 5.3 38 4-42 9-48 (111)
390 2yjn_A ERYCIII, glycosyltransf 24.0 38 0.0013 27.5 2.2 39 1-42 20-58 (441)
391 1o5k_A DHDPS, dihydrodipicolin 23.8 1.2E+02 0.0041 23.7 5.0 29 69-97 106-134 (306)
392 1oth_A Protein (ornithine tran 23.8 2.1E+02 0.0071 22.6 6.4 59 77-142 123-183 (321)
393 3u1h_A 3-isopropylmalate dehyd 23.8 2.6E+02 0.0087 22.9 7.0 72 1-82 22-101 (390)
394 3d1l_A Putative NADP oxidoredu 23.7 22 0.00076 26.8 0.7 15 67-81 65-79 (266)
395 3en0_A Cyanophycinase; serine 23.6 92 0.0031 24.3 4.3 14 65-78 105-118 (291)
396 1weh_A Conserved hypothetical 23.6 91 0.0031 22.1 4.0 31 2-33 1-34 (171)
397 2ojp_A DHDPS, dihydrodipicolin 23.5 1.2E+02 0.0042 23.3 5.0 40 69-114 95-134 (292)
398 1ydh_A AT5G11950; structural g 23.3 73 0.0025 23.7 3.5 32 2-34 9-43 (216)
399 1z2a_A RAS-related protein RAB 23.2 1.6E+02 0.0056 19.3 6.2 47 65-116 72-118 (168)
400 2ozl_B PDHE1-B, pyruvate dehyd 23.2 1.8E+02 0.0062 23.0 6.1 66 14-95 225-293 (341)
401 3loq_A Universal stress protei 23.1 1.7E+02 0.0059 21.9 5.9 39 3-43 171-209 (294)
402 3lwb_A D-alanine--D-alanine li 23.0 1.4E+02 0.0049 23.8 5.5 39 3-42 11-52 (373)
403 3i4f_A 3-oxoacyl-[acyl-carrier 23.0 75 0.0026 23.6 3.6 34 4-42 8-41 (264)
404 1h75_A Glutaredoxin-like prote 22.9 1.2E+02 0.004 17.5 4.6 34 4-42 2-35 (81)
405 1hyq_A MIND, cell division inh 22.6 1.2E+02 0.0041 22.4 4.8 39 1-42 1-41 (263)
406 1cfz_A Hydrogenase 2 maturatio 22.5 2E+02 0.0068 20.0 6.4 68 4-90 2-75 (162)
407 2kok_A Arsenate reductase; bru 22.5 1.4E+02 0.0048 19.4 4.6 32 6-42 7-39 (120)
408 2qpq_A Protein BUG27; alpha/be 22.5 63 0.0022 25.1 3.2 36 6-41 12-47 (301)
409 3vtf_A UDP-glucose 6-dehydroge 22.4 27 0.00093 29.2 1.0 55 20-79 355-409 (444)
410 3q3j_B RHO-related GTP-binding 22.3 2.1E+02 0.0073 20.2 7.9 47 65-116 93-140 (214)
411 1gpm_A GMP synthetase, XMP ami 22.3 2.4E+02 0.0083 23.8 7.0 32 3-41 8-40 (525)
412 2h57_A ADP-ribosylation factor 22.3 1.9E+02 0.0066 19.7 8.5 49 65-116 85-135 (190)
413 3tsa_A SPNG, NDP-rhamnosyltran 22.3 50 0.0017 26.0 2.6 35 4-40 3-37 (391)
414 3l18_A Intracellular protease 22.3 37 0.0013 23.5 1.6 97 4-116 4-104 (168)
415 2dkn_A 3-alpha-hydroxysteroid 22.1 57 0.002 23.8 2.8 35 2-42 1-35 (255)
416 1ooe_A Dihydropteridine reduct 21.9 1.7E+02 0.0059 21.1 5.4 37 1-42 1-37 (236)
417 1hdo_A Biliverdin IX beta redu 21.8 68 0.0023 22.4 3.1 74 1-81 1-78 (206)
418 3a9s_A D-arabinose isomerase; 21.8 72 0.0025 27.7 3.6 15 70-84 84-98 (595)
419 1fo5_A Thioredoxin; disulfide 21.8 86 0.0029 18.1 3.2 36 5-42 6-44 (85)
420 3h4t_A Glycosyltransferase GTF 21.7 71 0.0024 25.6 3.5 36 4-41 2-37 (404)
421 2vpq_A Acetyl-COA carboxylase; 21.7 2E+02 0.0068 23.3 6.3 32 2-40 1-32 (451)
422 3lvu_A ABC transporter, peripl 21.7 82 0.0028 23.4 3.6 34 6-40 131-164 (258)
423 1z0f_A RAB14, member RAS oncog 21.7 90 0.0031 21.0 3.6 48 65-116 82-129 (179)
424 3cs3_A Sugar-binding transcrip 21.6 2.4E+02 0.0083 20.6 6.7 37 4-41 10-47 (277)
425 3bc1_A RAS-related protein RAB 21.6 1.9E+02 0.0066 19.5 7.8 48 66-116 89-136 (195)
426 2npb_A Selenoprotein W; struct 21.6 1.4E+02 0.0046 19.1 4.1 28 1-28 1-31 (96)
427 1xky_A Dihydrodipicolinate syn 21.6 1.2E+02 0.004 23.6 4.6 29 69-97 106-134 (301)
428 1oc2_A DTDP-glucose 4,6-dehydr 21.4 46 0.0016 25.8 2.2 16 66-81 71-86 (348)
429 3dah_A Ribose-phosphate pyroph 21.4 1.1E+02 0.0039 24.1 4.4 59 2-79 5-63 (319)
430 3us8_A Isocitrate dehydrogenas 21.4 1.2E+02 0.0042 25.1 4.8 75 13-96 39-129 (427)
431 3eb2_A Putative dihydrodipicol 21.4 2.3E+02 0.0077 21.9 6.2 29 69-97 98-126 (300)
432 3hyw_A Sulfide-quinone reducta 21.4 72 0.0025 25.9 3.4 38 1-43 1-38 (430)
433 2p5s_A RAS and EF-hand domain 21.3 75 0.0026 22.3 3.2 46 66-115 96-141 (199)
434 3mz0_A Inositol 2-dehydrogenas 21.3 41 0.0014 26.5 1.9 14 70-83 66-79 (344)
435 4b4o_A Epimerase family protei 21.3 61 0.0021 24.6 2.8 30 4-39 2-31 (298)
436 1z0s_A Probable inorganic poly 21.3 1.7E+02 0.0059 22.6 5.4 28 4-37 31-58 (278)
437 2hmt_A YUAA protein; RCK, KTN, 21.3 29 0.00099 22.9 0.8 14 68-81 68-81 (144)
438 3t1o_A Gliding protein MGLA; G 21.2 2E+02 0.0068 19.5 8.6 46 66-116 93-144 (198)
439 4got_A Methionine-binding lipo 21.2 1.4E+02 0.0048 22.7 4.7 39 4-44 6-44 (249)
440 2fu5_C RAS-related protein RAB 21.2 1.1E+02 0.0037 20.9 4.0 47 66-116 76-122 (183)
441 2orw_A Thymidine kinase; TMTK, 21.2 1.6E+02 0.0054 20.8 4.9 36 1-38 1-37 (184)
442 3hdj_A Probable ornithine cycl 21.1 91 0.0031 24.4 3.9 17 65-81 178-194 (313)
443 3n6r_A Propionyl-COA carboxyla 21.1 32 0.0011 30.4 1.2 32 1-39 1-32 (681)
444 3qjg_A Epidermin biosynthesis 21.1 1.2E+02 0.0042 21.6 4.2 36 106-145 109-147 (175)
445 2il1_A RAB12; G-protein, GDP, 21.1 90 0.0031 21.7 3.6 46 66-115 94-139 (192)
446 2ywb_A GMP synthase [glutamine 21.0 2.4E+02 0.0082 23.6 6.7 30 5-41 2-32 (503)
447 3l0i_B RAS-related protein RAB 21.0 1.3E+02 0.0044 21.0 4.4 46 66-115 101-146 (199)
448 3kp1_E D-ornithine aminomutase 21.0 98 0.0034 20.8 3.3 25 176-200 17-41 (121)
449 3jvd_A Transcriptional regulat 21.0 2.2E+02 0.0074 21.8 6.1 38 4-42 66-104 (333)
450 2iya_A OLEI, oleandomycin glyc 21.0 98 0.0033 24.7 4.1 38 3-42 13-50 (424)
451 4fs3_A Enoyl-[acyl-carrier-pro 20.9 1.8E+02 0.0062 21.6 5.5 36 3-43 6-43 (256)
452 2fi9_A Outer membrane protein; 20.9 75 0.0026 21.4 2.9 27 70-96 68-94 (128)
453 3rft_A Uronate dehydrogenase; 20.9 58 0.002 24.4 2.6 72 1-81 1-75 (267)
454 3l4b_C TRKA K+ channel protien 20.8 1.9E+02 0.0065 20.7 5.4 71 4-81 2-76 (218)
455 4g65_A TRK system potassium up 20.7 2.4E+02 0.0082 23.3 6.6 71 4-81 5-79 (461)
456 2zyd_A 6-phosphogluconate dehy 20.7 1.8E+02 0.0063 24.2 5.9 59 71-145 79-138 (480)
457 2d59_A Hypothetical protein PH 20.6 2E+02 0.0069 19.3 6.8 55 70-145 77-131 (144)
458 3td9_A Branched chain amino ac 20.6 1.7E+02 0.0059 22.5 5.5 34 3-37 150-183 (366)
459 2i2c_A Probable inorganic poly 20.6 1.1E+02 0.0038 23.2 4.2 30 4-35 2-31 (272)
460 4gwg_A 6-phosphogluconate dehy 20.6 3.4E+02 0.011 22.7 7.4 119 3-146 5-129 (484)
461 1jye_A Lactose operon represso 20.6 2.9E+02 0.0098 21.2 6.8 38 4-42 63-101 (349)
462 3tfo_A Putative 3-oxoacyl-(acy 20.5 1.3E+02 0.0046 22.5 4.7 35 2-41 3-37 (264)
463 3dz8_A RAS-related protein RAB 20.5 98 0.0034 21.4 3.7 47 66-116 91-137 (191)
464 3dii_A Short-chain dehydrogena 20.5 1.6E+02 0.0055 21.5 5.1 35 3-42 2-36 (247)
465 1pdo_A Mannose permease; phosp 20.5 2E+02 0.0068 19.2 6.9 75 2-89 1-76 (135)
466 3g79_A NDP-N-acetyl-D-galactos 20.4 46 0.0016 28.0 2.1 47 22-79 377-423 (478)
467 2p6p_A Glycosyl transferase; X 20.4 85 0.0029 24.6 3.6 36 4-41 2-37 (384)
468 2v9d_A YAGE; dihydrodipicolini 20.4 1.3E+02 0.0043 24.0 4.6 29 69-97 125-153 (343)
469 1ek0_A Protein (GTP-binding pr 20.4 1.2E+02 0.0043 20.0 4.1 47 65-115 70-116 (170)
470 2f5x_A BUGD; periplasmic bindi 20.4 62 0.0021 25.4 2.7 36 6-41 21-56 (312)
471 2bme_A RAB4A, RAS-related prot 20.4 86 0.0029 21.4 3.3 45 67-115 79-123 (186)
472 1kht_A Adenylate kinase; phosp 20.3 1.3E+02 0.0045 20.6 4.3 39 1-41 1-40 (192)
473 3uuw_A Putative oxidoreductase 20.2 99 0.0034 23.7 3.9 18 66-83 62-79 (308)
474 3glk_A Acetyl-COA carboxylase 20.2 1.2E+02 0.004 25.9 4.6 15 130-144 168-182 (540)
475 3clv_A RAB5 protein, putative; 20.2 2.1E+02 0.0072 19.4 6.6 71 65-142 111-181 (208)
476 2hmc_A AGR_L_411P, dihydrodipi 20.1 1.2E+02 0.0042 24.1 4.5 42 69-116 117-160 (344)
477 3qze_A DHDPS, dihydrodipicolin 20.1 1.1E+02 0.0036 24.1 4.0 29 69-97 117-145 (314)
478 3fg9_A Protein of universal st 20.0 96 0.0033 20.7 3.4 41 2-43 15-56 (156)
No 1
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=100.00 E-value=3.1e-33 Score=213.79 Aligned_cols=193 Identities=40% Similarity=0.640 Sum_probs=144.1
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCC-CCCChhhhhhcCeeEEeccc
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDV-PIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~-~~~~~~~l~~aD~iiigsP~ 80 (203)
|+||+|||+|++|||+++|+.+++++.+ .|++++++++.+. +..+..+..|. .++. +....+++.+||+|||+||+
T Consensus 5 M~kilii~~S~~g~T~~la~~i~~~l~~-~g~~v~~~~l~~~-~~~~~~~~~~~-~~~~~~~~~~~~l~~aD~ii~gsP~ 81 (200)
T 2a5l_A 5 SPYILVLYYSRHGATAEMARQIARGVEQ-GGFEARVRTVPAV-STECEAVAPDI-PAEGALYATLEDLKNCAGLALGSPT 81 (200)
T ss_dssp CCEEEEEECCSSSHHHHHHHHHHHHHHH-TTCEEEEEBCCCE-EC--------------CCBCCHHHHHTCSEEEEEEEC
T ss_pred cceEEEEEeCCCChHHHHHHHHHHHHhh-CCCEEEEEEhhhc-cchhhhhcccc-ccccCchhhHHHHHHCCEEEEEcCh
Confidence 4599999999999999999999999998 7899999999886 33333222232 2222 32347789999999999999
Q ss_pred cCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccC
Q 028841 81 RFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKG 160 (203)
Q Consensus 81 y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~ 160 (203)
||+++|+++|+|||++...|....++||++++|+++|+..++...++.++...|...|+.+++..+.++. + ...+++
T Consensus 82 y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~-~--~~~~~~ 158 (200)
T 2a5l_A 82 RFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVLGIPYSEPA-L--LETRGG 158 (200)
T ss_dssp BTTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEEEBSCSSCCHHHHHHHHHHHHHHTTCEECCCCC--------------
T ss_pred hccCccHHHHHHHHHHHHHhhccccCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCcc-c--cccccC
Confidence 9999999999999999766555568999999999999876666556788888999999999987654210 0 001233
Q ss_pred CCCCccceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 028841 161 GSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKLK 200 (203)
Q Consensus 161 ~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~l~~~~~~~~ 200 (203)
+..+|.+.+.+ ++...|+++++++++++|++|++.++++.
T Consensus 159 ~~~~~~~~~~~~~~~~~p~~~~~~~a~~~g~~l~~~~~~~~ 199 (200)
T 2a5l_A 159 GTPYGASHFAGADGKRSLDEHELTLCRALGKRLAETAGKLG 199 (200)
T ss_dssp -CTTSBCCBCCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcceeeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566666654 55568999999999999999999998875
No 2
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=100.00 E-value=1.4e-32 Score=209.83 Aligned_cols=196 Identities=52% Similarity=0.907 Sum_probs=151.1
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCC-CCCChhhhhhcCeeEEecc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDV-PIITPNELAEADGFVFGFP 79 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~-~~~~~~~l~~aD~iiigsP 79 (203)
|| ||+|||+|++|||+++|+.|++++++..|++++++++.+..+...+.....+ ++. +....+++.+||+|||+||
T Consensus 1 Mm-kilii~~S~~g~t~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~aD~ii~gsP 77 (198)
T 3b6i_A 1 MA-KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGK--TQTAPVATPQELADYDAIIFGTP 77 (198)
T ss_dssp -C-EEEEEECCSSSHHHHHHHHHHHHHHTSTTCEEEEEECCCCSCHHHHHHTTCC--CCCSCBCCGGGGGGCSEEEEEEE
T ss_pred CC-eEEEEEeCCCcHHHHHHHHHHHHHhhcCCCEEEEEEccccCchhhhhhcccc--cccCchhhHHHHHHCCEEEEEeC
Confidence 65 9999999999999999999999998523889999999987443221111111 122 2223678999999999999
Q ss_pred ccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCcccccccc
Q 028841 80 TRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVK 159 (203)
Q Consensus 80 ~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~ 159 (203)
+||+++|+++|+|||++...|....++||++++|+++|+. ++...++.++...+..+||.+++.++..+ .......++
T Consensus 78 ~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~-g~~~~~l~~l~~~l~~~g~~~v~~~~~~~-~~~~~~~~~ 155 (198)
T 3b6i_A 78 TRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTG-GGQEQTITSTWTTLAHHGMVIVPIGYAAQ-ELFDVSQVR 155 (198)
T ss_dssp EETTEECHHHHHHHTTCHHHHHHTTTTTCEEEEEEEESSS-TTHHHHHHHHHHHHHHTTCEECCCTTCSG-GGGCCSSCC
T ss_pred hhcCCchHHHHHHHHHhhhhhhhcccCCCEEEEEEeCCCC-ccHHHHHHHHHHHHHHCCcEEECCCCCcc-ccccccccc
Confidence 9999999999999999976655556899999999999987 45556678888899999999999776421 001111245
Q ss_pred CCCCCccceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 028841 160 GGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKLKG 201 (203)
Q Consensus 160 ~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 201 (203)
++..+|.+.+.+ ++...|+++++++|+++|++|++.++++++
T Consensus 156 g~~~~g~~~~~~~~~~~~~~~~~~~~a~~~g~~la~~~~~~~~ 198 (198)
T 3b6i_A 156 GGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG 198 (198)
T ss_dssp CCBTTBCEEECCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCcceecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 667788877766 566789999999999999999999988753
No 3
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.1e-31 Score=205.18 Aligned_cols=192 Identities=39% Similarity=0.624 Sum_probs=145.0
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCC-CCCChhhhhhcCeeEEeccc
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDV-PIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~-~~~~~~~l~~aD~iiigsP~ 80 (203)
|+||+|||+| +|||+++|+.+++++.+ .|++++++++.+. ++.|..+...++.+|. +....+++.+||+|||+||+
T Consensus 4 mmkilii~~S-~g~T~~la~~i~~~l~~-~g~~v~~~~l~~~-~~~~~~~~~~~~~~d~~~~~~~~~l~~aD~ii~gsP~ 80 (199)
T 2zki_A 4 KPNILVLFYG-YGSIVELAKEIGKGAEE-AGAEVKIRRVRET-LPPEFQSRIPFDKVKDIPEVTLDDMRWADGFAIGSPT 80 (199)
T ss_dssp CCEEEEEECC-SSHHHHHHHHHHHHHHH-HSCEEEEEECCCC-SCGGGGTTCCGGGSTTSCBCCHHHHHHCSEEEEEEEC
T ss_pred CcEEEEEEeC-ccHHHHHHHHHHHHHHh-CCCEEEEEehhHh-CChhhhhccCCCcccccccccHHHHHhCCEEEEECCc
Confidence 3599999999 99999999999999988 6899999999887 5444432221222322 22136789999999999999
Q ss_pred cCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccC
Q 028841 81 RFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKG 160 (203)
Q Consensus 81 y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~ 160 (203)
||+++|+++|+|||++...|....++||++++|+++|+..++...++.++...+...||.+++..+.++.. ....++
T Consensus 81 y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~g~~~~~~~l~~~l~~~g~~~~~~~~~~~~~---~~~~~~ 157 (199)
T 2zki_A 81 RYGNMAGGLKTFLDTTAILWKDNVLYGKPVTFFTEASTVHGGHETTILTMSTYAYHFGMIIVPIGYGIPEL---FQTTTG 157 (199)
T ss_dssp BTTBCCHHHHHHHHTTHHHHHTTSSTTCEEEEEEEBSSTTSSSSHHHHHHTHHHHHHTCEECCCTTCSTHH---HHCSSS
T ss_pred cccCccHHHHHHHHHhhhcccccccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHHCCeEEeCCCcCCccc---cccccC
Confidence 99999999999999987666555789999999999988755544557788889999999999877542100 000123
Q ss_pred CCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 028841 161 GSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKKLKG 201 (203)
Q Consensus 161 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 201 (203)
++.+|.+.+.+. ..|+++++++++++|++|++.++++++
T Consensus 158 ~~~~~~~~~~~~--~~~~~~~~~~a~~~g~~l~~~~~~l~~ 196 (199)
T 2zki_A 158 GGPYGATHLGSK--EELDEMERKIARFQGKRITEVAKAIKC 196 (199)
T ss_dssp CCSSCCCCBSSC--SSCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcceeeecCC--CCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555433221 178999999999999999999988764
No 4
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=100.00 E-value=6.3e-32 Score=208.43 Aligned_cols=191 Identities=35% Similarity=0.491 Sum_probs=146.0
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccC-CCCC-----CCCCCCCChhhhhhcCeeE
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKM-SAPP-----KSDVPIITPNELAEADGFV 75 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~-~~~~-----~~d~~~~~~~~l~~aD~ii 75 (203)
|+||+|||+|++|||+++|+.|++++++ .|.+++++++.+. +.+|..+. .++. .+|++....+++.+||+||
T Consensus 6 mmkilii~~S~~g~T~~la~~i~~~l~~-~g~~v~~~~l~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ii 83 (211)
T 1ydg_A 6 PVKLAIVFYSSTGTGYAMAQEAAEAGRA-AGAEVRLLKVRET-APQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIV 83 (211)
T ss_dssp CCEEEEEECCSSSHHHHHHHHHHHHHHH-TTCEEEEEECCCC-SCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSEEE
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHhc-CCCEEEEEecccc-ccchhhhcccccccccccccchhHHHHHHHHHCCEEE
Confidence 3499999999999999999999999998 7999999999987 43332111 1110 0133223478899999999
Q ss_pred EeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCcccc
Q 028841 76 FGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEM 155 (203)
Q Consensus 76 igsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~ 155 (203)
|+||+||+++|+++|+|||++...|....++||++++|+++|+..++...++.++...+...||.+++.++.++. +
T Consensus 84 ~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~-~--- 159 (211)
T 1ydg_A 84 FSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPPGYTDEV-I--- 159 (211)
T ss_dssp EEEEEETTEECHHHHHHHHTTHHHHHTTTTTTCEEEEEEEESSTTSSTTHHHHHHHHHHHTTTCEECCCTTCSHH-H---
T ss_pred EEcCccccCccHHHHHHHHHhccccccccCCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHCCCEEeCCCCCChh-h---
Confidence 999999999999999999998766555578999999999998876555556788889999999999987654210 0
Q ss_pred ccccCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 028841 156 EKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKKLKG 201 (203)
Q Consensus 156 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 201 (203)
-.++++.+|...+.+. ..|+++++++|+++|++|++.+++++.
T Consensus 160 -~~~~~~~~g~~~~~~~--~~p~~~~~~~a~~~g~~l~~~~~~~~~ 202 (211)
T 1ydg_A 160 -FKSGGNPYGASVTANG--QPLLENDRASIRHQVRRQVELTAKLLE 202 (211)
T ss_dssp -HHTTCCSSSCEEECCS--SCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccCCCCCccceeecCC--CCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0123445565444221 378999999999999999999988754
No 5
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=99.97 E-value=8.1e-31 Score=199.81 Aligned_cols=180 Identities=26% Similarity=0.348 Sum_probs=129.8
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecccc
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR 81 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y 81 (203)
|+||+|||+|++|||+++|+.|++++++ . .+++.+. +|+++...+++.+||+||||||+|
T Consensus 6 ~~kiliiy~S~~GnT~~lA~~ia~~l~~-~-----~~~v~~~--------------~~~~~~~~~~l~~~D~ii~gsP~y 65 (193)
T 3d7n_A 6 SSNTVVVYHSGYGHTHRMAEAVAEGAEA-T-----LHAIDAE--------------GNLSEDGWAALDAADAIIFGTPTY 65 (193)
T ss_dssp CCCEEEEECCSSSHHHHHHHHHHHHHTC-E-----EEECCTT--------------SCCCHHHHHHHHHCSEEEEEEEEE
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHhhh-c-----ceEeeec--------------CCCCHhHHHHHHHCCEEEEEeCcc
Confidence 3499999999999999999999999975 2 3444432 011111146899999999999999
Q ss_pred CCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCc--ccccccc
Q 028841 82 FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGM--FEMEKVK 159 (203)
Q Consensus 82 ~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~--~~~~~~~ 159 (203)
++++|+++|+|||++...|....++||++++|+++|+..++.+.++.++...|..+||.+++..+.+++.- ......+
T Consensus 66 ~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~l~~~l~~~G~~~vg~~~~~~~~~~~~~~~~~~ 145 (193)
T 3d7n_A 66 MGGPSWQFKKFADASSKPWFSAKWQDKVFGGFTNSASLNGDKLNTLQYLVLLAGQHGGLWVSLGIKPSNLKSSVRNDANR 145 (193)
T ss_dssp TTEECHHHHHHHHHTHHHHHTTTTTTCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEECCCC----------------
T ss_pred CCCccHHHHHHHHHhhhhccccccCCCEEEEEEECCCCCCChHHHHHHHHHHHHHCCCEEeCCccCcccccccccccCCC
Confidence 99999999999999976666667899999999999876656667788899999999999999876644210 0000012
Q ss_pred CCCCCccceecC-CC-CCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 028841 160 GGSPYGAGTFAG-DG-SRQPTELELEQAFHQGKHIAGIAKKLKG 201 (203)
Q Consensus 160 ~~~~~g~~~~~~-~~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 201 (203)
+++.+|...+.+ ++ ...|++++++.|+++|++|++.++++++
T Consensus 146 ~g~~~g~~~~~~~~~~~~~~d~~~l~~a~~~G~~la~~~~~l~~ 189 (193)
T 3d7n_A 146 MGSYIAPMAQSDADAAPEEMSVGDLETARLYGARVANVARQHKS 189 (193)
T ss_dssp ---CCSCEEEC-------CCCHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCCcceeeEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344467666653 43 2238999999999999999999988764
No 6
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=99.96 E-value=7.4e-28 Score=182.61 Aligned_cols=165 Identities=32% Similarity=0.519 Sum_probs=128.1
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecccc
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR 81 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y 81 (203)
|+||+|||+|++|||+++|+.|++++.+..|++++++++.+.+ .+++.+||+|||+||+|
T Consensus 4 M~kiliiy~S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~~--------------------~~~l~~aD~ii~gsP~y 63 (188)
T 2ark_A 4 MGKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEAT--------------------KEDVLWADGLAVGSPTN 63 (188)
T ss_dssp CEEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTTCC--------------------HHHHHHCSEEEEEEECB
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHhhcCCCeEEEEEhhhCC--------------------HHHHHhCCEEEEEeCcc
Confidence 4499999999999999999999999975237899999998753 45789999999999999
Q ss_pred CCccHHHHHHHHHHhcc-cccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccC
Q 028841 82 FGMMAAQFKAFLDATGG-LWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKG 160 (203)
Q Consensus 82 ~~~~~~~~k~~ld~~~~-~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~ 160 (203)
++++|+.+|+|||++.. .| ..++||++++|+++|+..++...++.++.+.+..+||.+++.....+. +.
T Consensus 64 ~g~~~~~lk~fld~~~~~~~--~~l~gk~~~~~~t~g~~~g~~~~~l~~l~~~l~~~g~~~~~~~~~~~~--------~~ 133 (188)
T 2ark_A 64 MGLVSWKMKRFFDDVLGDLW--GEIDGKIACAFSSSGGWGGGNEVACMSILTMLMNFGFLVFGVTDYVGK--------KF 133 (188)
T ss_dssp TTBCCHHHHHHHHHTGGGTT--TSCTTCEEEEEEEESSBTSSHHHHHHHHHHHHHHTTCEECCEEEEEET--------TE
T ss_pred CCcCCHHHHHHHHHHhhhhH--HHhCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHCCcEEeCCCccccc--------cc
Confidence 99999999999999864 22 358999999999976545555556777888888899999874311000 00
Q ss_pred CCCCccceecCCCCCCCC-HHHHHHHHHHHHHHHHHHHHhhc
Q 028841 161 GSPYGAGTFAGDGSRQPT-ELELEQAFHQGKHIAGIAKKLKG 201 (203)
Q Consensus 161 ~~~~g~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~ 201 (203)
...+|... ...|+ ++++++|+++|++|++.+++++.
T Consensus 134 ~~~~g~~~-----~~~p~~~~~~~~~~~~g~~la~~~~~~~~ 170 (188)
T 2ark_A 134 TLHYGAVV-----AGEPRSEEEKEACRRLGRRLAEWVAIFVD 170 (188)
T ss_dssp EESSSEEE-----ESSCCSHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred cCCCccee-----ecCCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 01122211 13788 99999999999999999988764
No 7
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=99.96 E-value=1.2e-27 Score=177.20 Aligned_cols=145 Identities=23% Similarity=0.294 Sum_probs=120.7
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFG 83 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~ 83 (203)
|++|+|+|++|||+++|+.|++++.+ .|++++++++.+.++.++ .+++.++|+||||||+|++
T Consensus 2 kv~IvY~S~tGnT~~~A~~ia~~l~~-~g~~v~~~~~~~~~~~~~----------------~~~~~~~d~ii~Gspty~g 64 (161)
T 3hly_A 2 SVLIGYLSDYGYSDRLSQAIGRGLVK-TGVAVEMVDLRAVDPQEL----------------IEAVSSARGIVLGTPPSQP 64 (161)
T ss_dssp CEEEEECTTSTTHHHHHHHHHHHHHH-TTCCEEEEETTTCCHHHH----------------HHHHHHCSEEEEECCBSSC
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHh-CCCeEEEEECCCCCHHHH----------------HHHHHhCCEEEEEcCCcCC
Confidence 89999999999999999999999988 799999999988654432 2467899999999999998
Q ss_pred ccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccCCCC
Q 028841 84 MMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSP 163 (203)
Q Consensus 84 ~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~~~ 163 (203)
.+|. +.|++++... .++||++++|+++||.+.. +..+.+.|...|+.+++.++.+ +
T Consensus 65 ~~p~--~~fl~~l~~~----~l~gk~v~~fgs~g~~g~a----~~~l~~~l~~~G~~~v~~~~~~----------~---- 120 (161)
T 3hly_A 65 SEAV--ATALSTIFAA----AHNKQAIGLFDSYGGDDEP----IDALLAQFRNLGLHTAFPPIRV----------K---- 120 (161)
T ss_dssp CHHH--HHHHHHHHHH----CCTTSEEEEECCCCSSBCC----HHHHHHHHHHTTCEESSSCBCC----------C----
T ss_pred chhH--HHHHHHHHhh----hhCCCEEEEEEcCCCCcHH----HHHHHHHHHHCCCEEecCceEE----------e----
Confidence 8774 9999987532 4899999999999986443 3457888999999999765432 2
Q ss_pred CccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 028841 164 YGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKKLK 200 (203)
Q Consensus 164 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~ 200 (203)
..|+++++++|++||++|++.+++-+
T Consensus 121 -----------~~P~~~dl~~~~~~g~~la~~l~~~~ 146 (161)
T 3hly_A 121 -----------DQPTEAIYQQCEESGTDLGQWLTRAD 146 (161)
T ss_dssp -----------SSCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred -----------eCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 38999999999999999999887543
No 8
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=99.95 E-value=3.1e-27 Score=174.67 Aligned_cols=144 Identities=18% Similarity=0.283 Sum_probs=120.7
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCC-CcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecccc
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPET-LPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR 81 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~-~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y 81 (203)
+||+|+|+|++|||++||+.|++++.+ .|++++++++.+. ++.++ .+++.++|+||||||+|
T Consensus 5 ~kv~IvY~S~~GnT~~iA~~ia~~l~~-~g~~v~~~~~~~~~~~~~~----------------~~~~~~~d~ii~Gspty 67 (159)
T 3fni_A 5 TSIGVFYVSEYGYSDRLAQAIINGITK-TGVGVDVVDLGAAVDLQEL----------------RELVGRCTGLVIGMSPA 67 (159)
T ss_dssp CEEEEEECTTSTTHHHHHHHHHHHHHH-TTCEEEEEESSSCCCHHHH----------------HHHHHTEEEEEEECCBT
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHH-CCCeEEEEECcCcCCHHHH----------------HHHHHhCCEEEEEcCcC
Confidence 489999999999999999999999988 7999999999886 54433 24678899999999999
Q ss_pred CCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccCC
Q 028841 82 FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGG 161 (203)
Q Consensus 82 ~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~ 161 (203)
++.+| ++.|++.+... .++||++++|+++||.+++. ..+.+.|...|+.+++.++. ++
T Consensus 68 ~g~~p--~~~~l~~l~~~----~~~~k~va~fgs~g~~~~a~----~~l~~~l~~~G~~~v~~~~~----------~~-- 125 (159)
T 3fni_A 68 ASAAS--IQGALSTILGS----VNEKQAVGIFETGGGDDEPI----DPLLSKFRNLGLTTAFPAIR----------IK-- 125 (159)
T ss_dssp TSHHH--HHHHHHHHHHH----CCTTSEEEEECCSSSCBCCH----HHHHHHHHHTTCEESSSCBC----------CS--
T ss_pred CCCcc--HHHHHHHHHhh----cccCCEEEEEEcCCCCcHHH----HHHHHHHHHCCCEEecCceE----------EE--
Confidence 99877 49999987532 57999999999999876543 44778899999999976543 12
Q ss_pred CCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028841 162 SPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKK 198 (203)
Q Consensus 162 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~ 198 (203)
..|+++|+++|++||++|++.+++
T Consensus 126 -------------~~P~~~dl~~~~~~g~~la~~~~~ 149 (159)
T 3fni_A 126 -------------QTPTENTYKLCEEAGTDLGQWVTR 149 (159)
T ss_dssp -------------SCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------eCCCHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999998765
No 9
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=99.94 E-value=9.2e-27 Score=183.22 Aligned_cols=167 Identities=16% Similarity=0.111 Sum_probs=127.3
Q ss_pred CCceEEEEEcCCc--chHHHHHHHHHHhcccCC-CceEEEEEcCCCCcHHHhcc-------CCCCCC--CCCCCCChhhh
Q 028841 1 MATKVYIVYYSMY--GHVEKLAEEIKKGASSVE-GVEAKLWQVPETLPEEVLGK-------MSAPPK--SDVPIITPNEL 68 (203)
Q Consensus 1 Mm~kilii~~S~~--g~T~~la~~i~~~~~~~~-g~~v~~~~l~~~~~~~~~~~-------~~~~~~--~d~~~~~~~~l 68 (203)
|| ||||||+|++ |||+++++.+++++.+ . |.+++++++.+.+++.|..+ ..|+.. +++.. ..+++
T Consensus 1 Mm-kIliI~gS~r~~s~T~~la~~i~~~l~~-~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~-~~~~l 77 (242)
T 1sqs_A 1 MN-KIFIYAGVRNHNSKTLEYTKRLSSIISS-RNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGV-IKKEL 77 (242)
T ss_dssp CC-EEEEEECCCCTTCHHHHHHHHHHHHHHH-HSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHH-HHHHH
T ss_pred CC-eEEEEECCCCCCChHHHHHHHHHHHHHH-hcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHH-HHHHH
Confidence 66 9999999985 9999999999999987 5 88999999998866544332 123322 33322 25789
Q ss_pred hhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcC
Q 028841 69 AEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTF 148 (203)
Q Consensus 69 ~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~ 148 (203)
.+||+|||+||+||+++|+.+|+|||++...+....+.||++++|+|+|+.+.. .++.++...+...|+.+++....
T Consensus 78 ~~AD~iI~~sP~y~~~~p~~lK~~iDr~~~~~~~~~l~gK~~~~i~t~g~~g~~--~~~~~l~~~l~~~G~~~v~~~~~- 154 (242)
T 1sqs_A 78 LESDIIIISSPVYLQNVSVDTKNFIERIGGWSHLFRLAGKFVVTLDVAESNGSD--NVSEYLRDIFSYMGGQILHQVSI- 154 (242)
T ss_dssp HHCSEEEEEEEECSSSCCHHHHHHHHHTGGGTTTTTTTTCEEEEEEEESSCCSC--CHHHHHHHHHHHTTCEEEEEEEE-
T ss_pred HHCCEEEEEccccccCCCHHHHHHHHHHHHhccccccCCCEEEEEEeCCCCchh--hHHHHHHHHHHHCCCeeeeEEEE-
Confidence 999999999999999999999999999964333346899999999998876432 23566888888899999875311
Q ss_pred CCCccccccccCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028841 149 GAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKK 198 (203)
Q Consensus 149 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~ 198 (203)
+ ..+++++.+++++++++|++.+++
T Consensus 155 ---------~----------------~~~~~~~~~~~~~~~~~la~~i~~ 179 (242)
T 1sqs_A 155 ---------T----------------NSLKDIAEAQLMEATYKIEDVLEG 179 (242)
T ss_dssp ---------E----------------GGGGGGHHHHHHHHHHHHHHHHTT
T ss_pred ---------e----------------ccCChHHHHHHHHHHHHHHHHHhc
Confidence 0 022346889999999999988764
No 10
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=99.94 E-value=3.8e-27 Score=179.99 Aligned_cols=174 Identities=18% Similarity=0.104 Sum_probs=128.5
Q ss_pred CCceEEEEEcCC--cchHHHHHHHHHHh-cccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEe
Q 028841 1 MATKVYIVYYSM--YGHVEKLAEEIKKG-ASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFG 77 (203)
Q Consensus 1 Mm~kilii~~S~--~g~T~~la~~i~~~-~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiig 77 (203)
||+||+|||+|+ +|||+++++.+++. +.+ .|.+++++|+.+.++.+|..++ ...++.. ...+++.+||+|||+
T Consensus 1 mMmkilii~gS~r~~g~t~~la~~i~~~~l~~-~g~~v~~~dl~~~~~~~~~~~~--~~~~~~~-~~~~~i~~aD~ii~~ 76 (197)
T 2vzf_A 1 MTYSIVAISGSPSRNSTTAKLAEYALAHVLAR-SDSQGRHIHVIDLDPKALLRGD--LSNAKLK-EAVDATCNADGLIVA 76 (197)
T ss_dssp CCEEEEEEECCSSTTCHHHHHHHHHHHHHHHH-SSEEEEEEEGGGSCHHHHHHTC--TTSHHHH-HHHHHHHHCSEEEEE
T ss_pred CCceEEEEECCCCCCChHHHHHHHHHHHHHHH-CCCeEEEEEccccCchhhcccc--cCcHHHH-HHHHHHHHCCEEEEE
Confidence 677999999997 69999999999999 887 6899999999988765554431 1111111 124679999999999
Q ss_pred ccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHH-HHHHHHHHcCcEEecCCCcCCCCccccc
Q 028841 78 FPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTAL-TAITQLVHHGMIFVPIGYTFGAGMFEME 156 (203)
Q Consensus 78 sP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~-~l~~~l~~~g~~~v~~~~~~~~~~~~~~ 156 (203)
||+||+++|+.+|+|||++.. ..++||++++|+++|+.++ .. ++. .+...+...|+.+++.+...
T Consensus 77 sP~y~~~~p~~lK~~ld~l~~----~~~~gK~~~~~~tgg~~~~-~~-a~~~~l~~~l~~~g~~~v~~~v~~-------- 142 (197)
T 2vzf_A 77 TPIYKASYTGLLKAFLDILPQ----FALAGKAALPLATGGSPAH-VL-ALDYGLRPVLHSMGVRHVVQSFFL-------- 142 (197)
T ss_dssp EECBTTBCCHHHHHHHTTSCT----TTTTTCEEEEEEEESSGGG-GG-HHHHTHHHHHHTTTCSEECCCEEE--------
T ss_pred eCccCCCCCHHHHHHHHhccc----cccCCCEEEEEEECCCcch-hh-HHHHHHHHHHHHcCCEeccceEEE--------
Confidence 999999999999999999853 2589999999999776543 22 243 47778888999998765321
Q ss_pred cccCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 028841 157 KVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKKL 199 (203)
Q Consensus 157 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~ 199 (203)
.. ..+ .+..+|. .+++++.++++++++++++.+++.
T Consensus 143 --~~-~~~---~~~~~g~-~~d~~~~~~l~~~~~~l~~~i~~~ 178 (197)
T 2vzf_A 143 --VQ-SQF---SVVDGKL-AVEDDVASQLNNAIDHFRLSLSSE 178 (197)
T ss_dssp --ES-CCC--------CC-CSCHHHHHHHHHHHHHHHHTCCCC
T ss_pred --ec-hhh---cccCCCC-cCCHHHHHHHHHHHHHHHHHHHhC
Confidence 10 000 1222333 689999999999999999876543
No 11
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=99.94 E-value=1.2e-26 Score=176.64 Aligned_cols=178 Identities=12% Similarity=0.055 Sum_probs=126.6
Q ss_pred CCceEEEEEcCC--cchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEec
Q 028841 1 MATKVYIVYYSM--YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGF 78 (203)
Q Consensus 1 Mm~kilii~~S~--~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigs 78 (203)
||+||++|++|+ +|+|+++++.+.+.++ .|.+++++|+.+.+...+ . ..|...++. ....+++.+||+|||+|
T Consensus 1 MM~kilii~gS~r~~s~t~~la~~~~~~~~--~~~~v~~~dl~~lp~~~~-~-~~~~~~~~~-~~~~~~i~~AD~iV~~s 75 (192)
T 3fvw_A 1 MSKRILFIVGSFSEGSFNRQLAKKAETIIG--DRAQVSYLSYDRVPFFNQ-D-LETSVHPEV-AHAREEVQEADAIWIFS 75 (192)
T ss_dssp --CEEEEEESCCSTTCHHHHHHHHHHHHHT--TSSEEEECCCSSCCCCCG-G-GTTSCCHHH-HHHHHHHHHCSEEEEEC
T ss_pred CCCEEEEEEcCCCCCCHHHHHHHHHHHhcC--CCCEEEEEeCccCCCCCc-c-cccCCcHHH-HHHHHHHHhCCEEEEEC
Confidence 788999999997 6899999999999997 478999999987532111 0 011111111 11367999999999999
Q ss_pred cccCCccHHHHHHHHHHhccccc------ccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCc
Q 028841 79 PTRFGMMAAQFKAFLDATGGLWR------TQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGM 152 (203)
Q Consensus 79 P~y~~~~~~~~k~~ld~~~~~~~------~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~ 152 (203)
|+||+++|+.+|+|||++.+... ...++||++++++++|+.++. ..+.++...+...|+.+++.....++
T Consensus 76 P~y~~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~g~~--~~~~~l~~~l~~~G~~~v~~~v~~~~-- 151 (192)
T 3fvw_A 76 PVYNYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGASPE--EVFEDYRSLLPFIRMHLVDQLTGVPI-- 151 (192)
T ss_dssp CCBTTBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC-----CCSHHHHHHHHHTTCEECCCCEEECC--
T ss_pred cccccCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCcchh--HHHHHHHHHHHHcCCeeecceeeccc--
Confidence 99999999999999999975421 236899999999998874322 22456788888999999987543211
Q ss_pred cccccccCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 028841 153 FEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKKLK 200 (203)
Q Consensus 153 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~ 200 (203)
....|. +|...++++..++++.+.+++.+.+.++.
T Consensus 152 ------------~~~~f~-~g~~~~~~~~~~~l~~~~~~l~~~~~~~~ 186 (192)
T 3fvw_A 152 ------------NSEAWS-TGILKVSAEKLAELSAQADALLSAIENLE 186 (192)
T ss_dssp ------------CTTHHH-HCCCCCCHHHHHHHHHHHHHHHHHTTC--
T ss_pred ------------chhhcc-CCccccCHHHHHHHHHHHHHHHHHHHhhh
Confidence 111122 34445689999999999999998887664
No 12
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=99.94 E-value=3e-25 Score=168.16 Aligned_cols=175 Identities=18% Similarity=0.191 Sum_probs=130.0
Q ss_pred CCceEEEEEcCC--cchHHHHHHHHHHhcccCCCceEEEEEcCCCCc-HHHhccCCCCCCCCCCCC---ChhhhhhcCee
Q 028841 1 MATKVYIVYYSM--YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLP-EEVLGKMSAPPKSDVPII---TPNELAEADGF 74 (203)
Q Consensus 1 Mm~kilii~~S~--~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~-~~~~~~~~~~~~~d~~~~---~~~~l~~aD~i 74 (203)
||++|+||+||. .++|+++++.+++.+. .+++++++|+.+++. ....+ .+.|+. ..+.+.+||++
T Consensus 1 M~k~I~vi~GS~R~~S~~~~la~~~~~~~~--~~~~~~~idl~dLP~~~~d~~-------~~~p~~~~~l~~~i~~aD~~ 71 (190)
T 3u7r_A 1 MVKTVAVMVGSLRKDSLNHKLMKVLQKLAE--GRLEFHLLHIGDLPHYNDDLW-------ADAPESVLRLKDRIEHSDAV 71 (190)
T ss_dssp -CEEEEEEESCCSTTCHHHHHHHHHHHHHT--TTEEEEECCGGGSCCCCGGGG-------GGCCHHHHHHHHHHHTSSEE
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHhcc--CCCEEEEEecccCCCCCCCcc-------cCCCHHHHHHHHHHHhCCcE
Confidence 899999999995 5689999999988776 488999999988642 11111 011111 25789999999
Q ss_pred EEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccc
Q 028841 75 VFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFE 154 (203)
Q Consensus 75 iigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~ 154 (203)
||+||+|++++|+.+|++||++++++....|.|||+++++++++..|+... ...|+..|...|+.+++.+...
T Consensus 72 ii~tPeYn~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S~G~~Gg~~a-~~~Lr~vl~~lg~~v~~~p~~~------ 144 (190)
T 3u7r_A 72 LAITPEYNRSYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTSPGVIGAALA-QARLKNDLLHVGTVMMSMPEAY------ 144 (190)
T ss_dssp EEECCCBTTBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEESSTTTTHHH-HHHHHHHHHTTTCEECCCSCCE------
T ss_pred EEechhhcccCCHHHHHHHHHhcccccCCccCCCEEEEEEeCCchhhHHHH-HHHHHHHHHHcCCEEccCCEEE------
Confidence 999999999999999999999987665567999999999988776666543 6678888888999998653110
Q ss_pred cccccCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 028841 155 MEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKKL 199 (203)
Q Consensus 155 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~ 199 (203)
+. .....|..+|. ..|++..++++.+.+++++++++.
T Consensus 145 ---i~----~~~~~fd~~G~-l~de~~~~~l~~~~~~~~~~i~~~ 181 (190)
T 3u7r_A 145 ---IQ----WHAEAYAADGS-VTDEKTAKFLQGFVDAFVDWIEKH 181 (190)
T ss_dssp ---EE----CCGGGBCTTSC-BCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---Ee----ccHhcCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHc
Confidence 00 01112433453 458888999999999999999874
No 13
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=99.93 E-value=1.2e-25 Score=164.08 Aligned_cols=143 Identities=19% Similarity=0.247 Sum_probs=115.2
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhh-hcCeeEEecc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELA-EADGFVFGFP 79 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~-~aD~iiigsP 79 (203)
|| |++|+|+|++|||+++|+.|++.+.+ .|++++++++.+.++ +++. ++|.|||++|
T Consensus 1 M~-ki~I~y~S~tGnT~~~A~~ia~~l~~-~g~~v~~~~~~~~~~--------------------~~l~~~~d~ii~g~p 58 (148)
T 3f6r_A 1 MS-KVLIVFGSSTGNTESIAQKLEELIAA-GGHEVTLLNAADASA--------------------ENLADGYDAVLFGCS 58 (148)
T ss_dssp -C-EEEEEEECSSSHHHHHHHHHHHHHHT-TTCEEEEEETTTBCC--------------------TTTTTTCSEEEEEEC
T ss_pred CC-eEEEEEECCCchHHHHHHHHHHHHHh-CCCeEEEEehhhCCH--------------------hHhcccCCEEEEEec
Confidence 54 99999999999999999999999998 799999999987532 3566 9999999999
Q ss_pred ccC---CccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccc
Q 028841 80 TRF---GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEME 156 (203)
Q Consensus 80 ~y~---~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~ 156 (203)
+|+ |.+|+.++.|++++... .+++|++++|++++...+....+...+.+.|...|+.+++..+.
T Consensus 59 ty~~~~G~~p~~~~~fl~~l~~~----~l~~k~~~vfg~G~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~--------- 125 (148)
T 3f6r_A 59 AWGMEDLEMQDDFLSLFEEFDRI----GLAGRKVAAFASGDQEYEHFCGAVPAIEERAKELGATIIAEGLK--------- 125 (148)
T ss_dssp EECSSSCEECHHHHHHHTTGGGT----CCTTCEEEEEEEECTTSSSTTTHHHHHHHHHHHTTCEECSCCEE---------
T ss_pred ccCCCCCCCcHHHHHHHHHhhcc----CCCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHHcCCEEeecceE---------
Confidence 999 59999999999998532 58999999999954322222223566888999999999876532
Q ss_pred cccCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 028841 157 KVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGI 195 (203)
Q Consensus 157 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 195 (203)
+. ..|++ +++++++|+++|++.
T Consensus 126 -~~---------------~~p~~-~~~~~~~~~~~l~~~ 147 (148)
T 3f6r_A 126 -ME---------------GDASN-DPEAVASFAEDVLKQ 147 (148)
T ss_dssp -EE---------------SSGGG-CHHHHHHHHHHHHHT
T ss_pred -ee---------------cCcch-HHHHHHHHHHHHHhh
Confidence 12 37888 999999999998763
No 14
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=99.93 E-value=7.7e-25 Score=172.37 Aligned_cols=177 Identities=16% Similarity=0.136 Sum_probs=130.8
Q ss_pred CceEEEEEcCC--cchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecc
Q 028841 2 ATKVYIVYYSM--YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFP 79 (203)
Q Consensus 2 m~kilii~~S~--~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP 79 (203)
|+||++|++|+ .|+|+++++.+++++.+ .|++++++||.+.++..+. . ...+++ ....+++.+||+|||+||
T Consensus 34 ~mkIliI~GS~r~~s~t~~La~~~~~~l~~-~g~eve~idL~~~pl~~~d---~-~~~d~~-~~l~~~i~~AD~iI~~sP 107 (247)
T 2q62_A 34 RPRILILYGSLRTVSYSRLLAEEARRLLEF-FGAEVKVFDPSGLPLPDAA---P-VSHPKV-QELRELSIWSEGQVWVSP 107 (247)
T ss_dssp CCEEEEEECCCCSSCHHHHHHHHHHHHHHH-TTCEEEECCCTTCCCTTSS---C-TTSHHH-HHHHHHHHHCSEEEEEEE
T ss_pred CCeEEEEEccCCCCCHHHHHHHHHHHHHhh-CCCEEEEEEhhcCCCCcCC---C-CCCHHH-HHHHHHHHHCCEEEEEeC
Confidence 45999999997 48999999999999987 7999999999987532110 0 000111 113678999999999999
Q ss_pred ccCCccHHHHHHHHHHhccccc-ccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccc
Q 028841 80 TRFGMMAAQFKAFLDATGGLWR-TQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKV 158 (203)
Q Consensus 80 ~y~~~~~~~~k~~ld~~~~~~~-~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~ 158 (203)
+||+++|+.||+||||+.+.|. ...++||++++++++|+.++. .++.++...+...||.+++..+..+.
T Consensus 108 ~Yn~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~tsG~~gg~--~a~~~Lr~~l~~lg~~~v~~~v~i~~-------- 177 (247)
T 2q62_A 108 ERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGSQSF--NAVNQMRILGRWMRMITIPNQSSVAK-------- 177 (247)
T ss_dssp CSSSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEECSSSCCC--HHHHHHHHHHHHTTCEECSCCEEESS--------
T ss_pred CCCCCccHHHHHHHHHhhhccCcccccCCCEEEEEEeCCCccHH--HHHHHHHHHHHHCCCEEeCCEEEEec--------
Confidence 9999999999999999976543 246899999999998876543 23677888888899999865543210
Q ss_pred cCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 028841 159 KGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKKLKG 201 (203)
Q Consensus 159 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 201 (203)
.+ ..|..+|. ..+++..++++.+++++++.+++++.
T Consensus 178 ----~~--~~fd~~g~-l~d~~~~~~l~~~~~~l~~~~~~l~~ 213 (247)
T 2q62_A 178 ----AF--QEFDANGR-MKPSSYYDRVVDVMEELVKFTLLTRD 213 (247)
T ss_dssp ----GG--GGBCTTSC-BCSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ----ch--hccCCCCC-cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 01222232 34677889999999999999887653
No 15
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=99.93 E-value=1.5e-25 Score=161.55 Aligned_cols=135 Identities=27% Similarity=0.396 Sum_probs=114.4
Q ss_pred EEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCCc
Q 028841 5 VYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGM 84 (203)
Q Consensus 5 ilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~~ 84 (203)
|+|+|+|++|||+++|+.|++++.+ .|++++++++.+.+ .+++.++|.||||+|+|+++
T Consensus 1 i~I~Y~S~tGnT~~iA~~ia~~l~~-~g~~v~~~~~~~~~--------------------~~~l~~~d~iiig~pty~~g 59 (138)
T 5nul_A 1 MKIVYWSGTGNTEKMAELIAKGIIE-SGKDVNTINVSDVN--------------------IDELLNEDILILGCSAMTDE 59 (138)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHH-TTCCCEEEEGGGCC--------------------HHHHTTCSEEEEEECCBTTT
T ss_pred CEEEEECCCchHHHHHHHHHHHHHH-CCCeEEEEEhhhCC--------------------HHHHhhCCEEEEEcCccCCC
Confidence 5899999999999999999999998 79999999998763 35788999999999999988
Q ss_pred cHH--HHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccCCC
Q 028841 85 MAA--QFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGS 162 (203)
Q Consensus 85 ~~~--~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~~ 162 (203)
.++ .++.|++++.. .++||++++|+|+||.++ .++..+.+.|...|+.+++.++. ++
T Consensus 60 ~~p~~~~~~fl~~l~~-----~l~~k~~~~f~t~g~~~~---~a~~~l~~~l~~~G~~~v~~~~~----------~~--- 118 (138)
T 5nul_A 60 VLEESEFEPFIEEIST-----KISGKKVALFGSYGWGDG---KWMRDFEERMNGYGCVVVETPLI----------VQ--- 118 (138)
T ss_dssp BCCTTTHHHHHHHHGG-----GCTTCEEEEEEEESSSCS---HHHHHHHHHHHHTTCEECSCCEE----------EE---
T ss_pred CCChHHHHHHHHHHHh-----hcCCCEEEEEEecCCCCC---hHHHHHHHHHHHCCCEEECCceE----------Ee---
Confidence 644 79999999853 289999999999998643 23567888999999999976543 22
Q ss_pred CCccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 028841 163 PYGAGTFAGDGSRQPTELELEQAFHQGKHIAG 194 (203)
Q Consensus 163 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~ 194 (203)
.+|+++| ++|++||++|++
T Consensus 119 ------------~~p~~~d-~~~~~~~~~l~~ 137 (138)
T 5nul_A 119 ------------NEPDEAE-QDCIEFGKKIAN 137 (138)
T ss_dssp ------------SSCGGGH-HHHHHHHHHHHT
T ss_pred ------------cCCCHHH-HHHHHHHHHHhc
Confidence 3899999 999999999975
No 16
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=99.93 E-value=3.6e-25 Score=176.36 Aligned_cols=178 Identities=12% Similarity=0.110 Sum_probs=131.5
Q ss_pred CceEEEEEcCC--cchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecc
Q 028841 2 ATKVYIVYYSM--YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFP 79 (203)
Q Consensus 2 m~kilii~~S~--~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP 79 (203)
|+||++|++|+ .|+|+++++.+++++.+ .|++++++|+.+.++..+... ...++. ....+++.+||+|||+||
T Consensus 58 ~mKILiI~GS~R~~S~T~~La~~~~~~l~~-~G~eveiidL~dlpl~~~d~~---~~~d~v-~~l~e~I~~ADgiV~aSP 132 (279)
T 2fzv_A 58 PVRILLLYGSLRARSFSRLAVEEAARLLQF-FGAETRIFDPSDLPLPDQVQS---DDHPAV-KELRALSEWSEGQVWCSP 132 (279)
T ss_dssp CCEEEEEESCCSSSCHHHHHHHHHHHHHHH-TTCEEEEBCCTTCCCTTTSGG---GCCHHH-HHHHHHHHHCSEEEEEEE
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHHhh-CCCEEEEEehhcCCCCccCcc---CCCHHH-HHHHHHHHHCCeEEEEcC
Confidence 45999999997 48999999999999988 799999999998764321110 001111 113678999999999999
Q ss_pred ccCCccHHHHHHHHHHhccccc-ccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccc
Q 028841 80 TRFGMMAAQFKAFLDATGGLWR-TQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKV 158 (203)
Q Consensus 80 ~y~~~~~~~~k~~ld~~~~~~~-~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~ 158 (203)
+||+++|+.||+||||+.+.|. ...++||++++++++|+.++. .++.++...+...||.+++..+..+.
T Consensus 133 ~Yn~sipg~LKn~IDrl~~~~g~~~~l~gK~v~lv~tsG~~gg~--~a~~~Lr~~l~~lg~~vv~~~v~v~~-------- 202 (279)
T 2fzv_A 133 ERHGQITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQVSGGSQSF--NAVNTLRLLGRWMRMFTIPNQSSIAK-------- 202 (279)
T ss_dssp EETTEECHHHHHHHHHSCSCBTTBCSSTTCEEEEEEECSSSCCC--HHHHHHHHHHHHTTCEECSCCEEETT--------
T ss_pred ccccCcCHHHHHHHHHHhhhcccccccCCCEEEEEEECCCccHH--HHHHHHHHHHHhcCcEEeCCEEEEec--------
Confidence 9999999999999999976543 246899999999998876433 23677888888899999865543210
Q ss_pred cCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 028841 159 KGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKKLKG 201 (203)
Q Consensus 159 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 201 (203)
. ...|..+|. ..+++..++++.++++++++++.++.
T Consensus 203 ----~--~~~fd~~G~-l~d~~~~~~l~~~~~~l~~~~~~l~~ 238 (279)
T 2fzv_A 203 ----A--FQEFDAAGR-MKPSPYYDRIADVMEELVRFTALVRP 238 (279)
T ss_dssp ----G--GGTBCTTSC-BCSSHHHHHHHHHHHHHHHHHHHHGG
T ss_pred ----c--ccccCCCCC-cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 001222332 34667889999999999999887654
No 17
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=99.92 E-value=5.3e-25 Score=167.07 Aligned_cols=172 Identities=16% Similarity=0.199 Sum_probs=124.8
Q ss_pred CceEEEEEcCC--cchHHHHHHHHHH----hcccC-CCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCee
Q 028841 2 ATKVYIVYYSM--YGHVEKLAEEIKK----GASSV-EGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGF 74 (203)
Q Consensus 2 m~kilii~~S~--~g~T~~la~~i~~----~~~~~-~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~i 74 (203)
|.||++|++|+ .|+|+++++.+.+ .+++. .|++++++||.+.+++.|..+..+.+.+++. ...+++.+||+|
T Consensus 11 ~~~il~i~GS~r~~S~t~~La~~~~~~~~~~l~~~~~g~eve~idL~d~~l~~~~~~~~~~~~~~~~-~~~~~i~~AD~i 89 (191)
T 3k1y_A 11 MRTLAVISAGLSTPSSTRQIADSISEAVTAAVSARGEALSVSTIELSELIPDLMTAMTTRVHTTKLE-EITSALSASDGL 89 (191)
T ss_dssp SEEEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCHHHHTTTTSSSCCCHHHH-HHHHHHHHCSEE
T ss_pred hceEEEEECCCCCCCHHHHHHHHHHHHhHHHHHhcCCCceEEEEEHHhCCCcccChhhcCCCCHHHH-HHHHHHHHCCEE
Confidence 67999999996 5899999999999 55541 2789999999998754433222121222221 136799999999
Q ss_pred EEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHH-HHHHHHHcCcEEecCCCcCCCCcc
Q 028841 75 VFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALT-AITQLVHHGMIFVPIGYTFGAGMF 153 (203)
Q Consensus 75 iigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~-l~~~l~~~g~~~v~~~~~~~~~~~ 153 (203)
||+||+||+++|+.||+||||+.+ ..+.||++++++++|+.++.. .+.+ |...|...|+.+++.++..
T Consensus 90 vi~sP~Y~~~~~~~lK~~iD~~~~----~~l~gK~~~~v~t~G~~~~~~--~~~~~L~~il~~lg~~vv~~~v~~----- 158 (191)
T 3k1y_A 90 VVATPVFKASYTGLFKMFFDILDT----DALTGMPTIIAATAGSARHSL--VLDYALRPLLSYMRAVVVPTGVFA----- 158 (191)
T ss_dssp EEEEECBTTBSCHHHHHHHHHSCT----TTTTTCEEEEEEEESSSTTTT--HHHHTHHHHHHHTTCEECSCCEEE-----
T ss_pred EEEcCccCCcCcHHHHHHHHHhhh----hhcCCCEEEEEEeCCCcchhh--HHHHHHHHHHHHCCCEEcCcEEEe-----
Confidence 999999999999999999999964 368999999999987765442 2334 7778888999999765431
Q ss_pred ccccccCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 028841 154 EMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKKLK 200 (203)
Q Consensus 154 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~ 200 (203)
. .. .|.. ..+++..+++++++++++..+++.+
T Consensus 159 -----~-~~-----~f~~----~~~~~~~~rl~~~~~~~~~~~~~~~ 190 (191)
T 3k1y_A 159 -----A-TE-----DFGG----PEGAEFNKRIARAAGELASLIVEES 190 (191)
T ss_dssp -----E-GG-----GCSH----HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred -----c-hh-----hcCC----CCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 1 00 1111 0146678888888888888887643
No 18
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=99.92 E-value=1.9e-24 Score=164.34 Aligned_cols=176 Identities=16% Similarity=0.078 Sum_probs=122.2
Q ss_pred ceEEEEEcCCc--chHHHHHHHHHHhcccCCCceEEEEEcCCCCcH-HHhccCCCCCCCCCCCCChhhhhhcCeeEEecc
Q 028841 3 TKVYIVYYSMY--GHVEKLAEEIKKGASSVEGVEAKLWQVPETLPE-EVLGKMSAPPKSDVPIITPNELAEADGFVFGFP 79 (203)
Q Consensus 3 ~kilii~~S~~--g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~-~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP 79 (203)
+||+|||+|++ |||+++++.+++.++ .|.+++++|+.+.+.. .+..+ +...+++. ...+++.+||+|||+||
T Consensus 7 Mkilii~gS~r~~g~t~~la~~i~~~l~--~g~~v~~~dl~~~p~~~~~~~~--~~~~~~~~-~~~~~l~~aD~ii~~sP 81 (193)
T 1rtt_A 7 IKVLGISGSLRSGSYNSAALQEAIGLVP--PGMSIELADISGIPLYNEDVYA--LGFPPAVE-RFREQIRAADALLFATP 81 (193)
T ss_dssp CEEEEEESCCSTTCHHHHHHHHHHTTCC--TTCEEEECCCTTCCCCCHHHHT--TCCCHHHH-HHHHHHHHCSEEEEECC
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHhcc--CCCeEEEEeHHHCCCCCccccc--cCCCHHHH-HHHHHHHhCCEEEEEcc
Confidence 38999999974 999999999999997 3889999999885431 11111 11111111 12568999999999999
Q ss_pred ccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecC-CCcCCCCccccccc
Q 028841 80 TRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPI-GYTFGAGMFEMEKV 158 (203)
Q Consensus 80 ~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~-~~~~~~~~~~~~~~ 158 (203)
+||+++|+.+|+|||++...+. ..++||++++|+|+|+..++. .++.++...+...|+.+++. .+..
T Consensus 82 ~y~~~~p~~lK~~iD~~~~~~~-~~l~gK~~~~~~t~gg~~g~~-~~~~~l~~~l~~~g~~~~~~~~~~~---------- 149 (193)
T 1rtt_A 82 EYNYSMAGVLKNAIDWASRPPE-QPFSGKPAAILGASAGRFGTA-RAQYHLRQTLVFLDVHPLNKPEVMI---------- 149 (193)
T ss_dssp EETTEECHHHHHHHHHHTCSSS-CTTTTCEEEEEEECSSTTTTH-HHHHHHHHHHHHHTCEECCSSCEEE----------
T ss_pred ccccCcCHHHHHHHHHhccccC-cccCCCeEEEEEeCCCCCccH-HHHHHHHHHHHHcCCEEcCCCeEEe----------
Confidence 9999999999999999975332 358999999999986544443 34677888888899999985 3321
Q ss_pred cCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 028841 159 KGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKKLK 200 (203)
Q Consensus 159 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~ 200 (203)
.+. ...+..++. ..+++..++++++++++++.+.+..
T Consensus 150 ~~~----~~~~~~~~~-~~~~~~~~~l~~~~~~l~~~~~~~~ 186 (193)
T 1rtt_A 150 SSA----QNAFDAQGR-LLDDKARELIQQQLQALQLWVREGG 186 (193)
T ss_dssp CSG----GGTBCSTTC-BCCHHHHHHHHHHHHHHHC------
T ss_pred cch----HhhcCcCCC-cCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 100 001222232 4478889999999999998887653
No 19
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=99.91 E-value=1.7e-25 Score=168.63 Aligned_cols=164 Identities=18% Similarity=0.147 Sum_probs=107.4
Q ss_pred CCceEEEEEcCCc--chHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCC-----CCCCCCCCCCChhhhhhcCe
Q 028841 1 MATKVYIVYYSMY--GHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMS-----APPKSDVPIITPNELAEADG 73 (203)
Q Consensus 1 Mm~kilii~~S~~--g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~-----~~~~~d~~~~~~~~l~~aD~ 73 (203)
|| ||||||+|++ |||+++++.+++++ +++.+++.+.+++.|..+.. |...+++.. ..+++.+||+
T Consensus 3 mM-kilii~~S~r~~g~t~~la~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~aD~ 74 (184)
T 1rli_A 3 AM-KIAVINGGTRSGGNTDVLAEKAVQGF------DAEHIYLQKYPIQPIEDLRHAQGGFRPVQDDYDS-IIERILQCHI 74 (184)
T ss_dssp ---CEEEEESSCSSCCHHHHHHHHHHTTT------CCEEEEC-----------------------CHHH-HHHHHHTCSE
T ss_pred Cc-EEEEEECCCCCCccHHHHHHHHHcCC------eEEEEEcCCCCCccCCccccccCCCCCCCCCHHH-HHHHHHhCCE
Confidence 56 9999999974 99999999999865 46778888876655544322 112222211 2568999999
Q ss_pred eEEeccccCCccHHHHHHHHHHhcccccc-------cCCCCCceEEEEecCCCC--CChHHHHHHHHHHHHHcCcEEecC
Q 028841 74 FVFGFPTRFGMMAAQFKAFLDATGGLWRT-------QQLAGKPAGMFYSTGSQG--GGQETTALTAITQLVHHGMIFVPI 144 (203)
Q Consensus 74 iiigsP~y~~~~~~~~k~~ld~~~~~~~~-------~~l~gK~~~~~~t~g~~~--~~~~~~~~~l~~~l~~~g~~~v~~ 144 (203)
|||+||+||+++|+.+|+|||++...+.. ..++||++++|+|+|+.. ++. ..+.++...+...|+.+++.
T Consensus 75 ii~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~-~~~~~l~~~l~~~G~~~~~~ 153 (184)
T 1rli_A 75 LIFATPIYWFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGDNPKIKGL-PLIQQFEHIFHFMGMSFKGY 153 (184)
T ss_dssp EEEEEECBTTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEESSCHHHHTH-HHHHHHHHHHHHHTCEEEEE
T ss_pred EEEEeCccccCCcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEeCCCCCccchH-HHHHHHHHHHHHcCCccceE
Confidence 99999999999999999999998543221 247899999999987742 222 23567778888889999874
Q ss_pred CCcCCCCccccccccCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHH
Q 028841 145 GYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIA 193 (203)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~ 193 (203)
....|. . .+...++++++++++++|++++
T Consensus 154 ~~~~g~------------~--------~~~~~~~~~~l~~a~~lg~~~~ 182 (184)
T 1rli_A 154 VLGEGN------------R--------PGDILRDHQALSAASRLLKRSD 182 (184)
T ss_dssp EEEECS------------S--------TTGGGGCHHHHHHHHHTTCCCC
T ss_pred EEEccC------------C--------cchhhcCHHHHHHHHHhhhhcc
Confidence 321110 0 1112457899999999998765
No 20
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=99.91 E-value=1.2e-23 Score=177.11 Aligned_cols=149 Identities=28% Similarity=0.278 Sum_probs=123.4
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecccc
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR 81 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y 81 (203)
|+|++|+|+|++|||+++|+.|++++.+ .|++++++++.+.++... .+++.+||+||||||+|
T Consensus 256 ~~kv~iiy~S~~GnT~~la~~i~~~l~~-~g~~v~~~~l~~~~~~~~----------------~~~l~~~D~iiigsP~y 318 (414)
T 2q9u_A 256 QKKVTVVLDSMYGTTHRMALALLDGARS-TGCETVLLEMTSSDITKV----------------ALHTYDSGAVAFASPTL 318 (414)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHH-TTCEEEEEEGGGCCHHHH----------------HHHHHTCSEEEEECCCB
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHh-CCCeEEEEEcCcCCHHHH----------------HHHHHhCCEEEEEcCcc
Confidence 3599999999999999999999999987 688999999987653322 34789999999999999
Q ss_pred CCccHHHHHHHHHHhcccccccCC-CCCceEEEEecCCCCCChHHHHHHHHHHHHH-cCcEEecCC-CcCCCCccccccc
Q 028841 82 FGMMAAQFKAFLDATGGLWRTQQL-AGKPAGMFYSTGSQGGGQETTALTAITQLVH-HGMIFVPIG-YTFGAGMFEMEKV 158 (203)
Q Consensus 82 ~~~~~~~~k~~ld~~~~~~~~~~l-~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~-~g~~~v~~~-~~~~~~~~~~~~~ 158 (203)
++++|+.+|+|+|++... .+ +||++++|+++|+.+++ ...+.+.|.. .|+.+++.+ +. +
T Consensus 319 ~~~~~~~~k~fld~l~~~----~~~~~K~~~~~~t~g~~~~a----~~~l~~~l~~~~g~~~~~~~~~~----------~ 380 (414)
T 2q9u_A 319 NNTMMPSVAAALNYVRGL----TLIKGKPAFAFGAFGWSNRA----VPDIVAELRDGCKADVYDEKGIT----------F 380 (414)
T ss_dssp TTBCCHHHHHHHHHHHHH----TTTTTSBEEEEEEESSSCCH----HHHHHHHHHHTSCCBCCCSSCEE----------E
T ss_pred CcCchHHHHHHHHHHHhh----cccCCCEEEEEEecCCCchh----HHHHHHHHHhhcCcEEccCccEE----------E
Confidence 999999999999998643 36 89999999999886432 3457788888 899988754 21 1
Q ss_pred cCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 028841 159 KGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKKLK 200 (203)
Q Consensus 159 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~ 200 (203)
. ..|+++++++++++++++++.+++++
T Consensus 381 ~---------------~~p~~~~~~~~~~~g~~l~~~~~~~~ 407 (414)
T 2q9u_A 381 K---------------FNYTEELLEQAYNAGVDLGKRAIAYC 407 (414)
T ss_dssp E---------------SCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred e---------------eCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 37899999999999999999887654
No 21
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=99.91 E-value=5.5e-24 Score=162.63 Aligned_cols=178 Identities=17% Similarity=0.134 Sum_probs=128.4
Q ss_pred ceEEEEEcCC--cchHHHHHHHHHHhcccCCCceEE-EEEcCCCCcH-HHhccCCCCCCCCCCCCChhhhhhcCeeEEec
Q 028841 3 TKVYIVYYSM--YGHVEKLAEEIKKGASSVEGVEAK-LWQVPETLPE-EVLGKMSAPPKSDVPIITPNELAEADGFVFGF 78 (203)
Q Consensus 3 ~kilii~~S~--~g~T~~la~~i~~~~~~~~g~~v~-~~~l~~~~~~-~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigs 78 (203)
+||++|++|+ .|+|+++++.+++.+. .|.+++ ++||.+.+.. ..... +...++. ....+++.+||+|||+|
T Consensus 7 mkIl~I~GS~r~~s~t~~la~~~~~~~~--~g~~v~~~idL~~lP~~~~~~~~--~~~~~~~-~~~~~~i~~AD~iVi~t 81 (199)
T 4hs4_A 7 LHFVTLLGSLRKASFNAAVARALPEIAP--EGIAITPLGSIGTFPHYSQDVQE--EGFPAPV-LTMAQQIATADAVVIVT 81 (199)
T ss_dssp EEEEEEECCCSTTCHHHHHHHHHHHHCC--TTEEEEECCCGGGSCCCCHHHHH--HCCCHHH-HHHHHHHHHSSEEEEEE
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHHHcc--CCCEEEEEEehhhcCCCCccccc--cCCCHHH-HHHHHHHHhCCEEEEEc
Confidence 3899999995 5899999999999996 488999 9999875321 11111 1111111 11367899999999999
Q ss_pred cccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCC-CcCCCCcccccc
Q 028841 79 PTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIG-YTFGAGMFEMEK 157 (203)
Q Consensus 79 P~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~-~~~~~~~~~~~~ 157 (203)
|+||+++|+.+|+||||+.+. ....+.||++++++++|+..++.. +..+|+..|...|+.+++.+ +..+.
T Consensus 82 P~Y~~s~p~~LK~~iD~~~~~-~~~~l~gK~v~~v~tsgg~~g~~~-a~~~Lr~il~~lg~~~v~~~~v~i~~------- 152 (199)
T 4hs4_A 82 PEYNYSVPGVLKNAIDWLSRV-SPQPLAGKPVALVTASPGMIGGAR-AQNHLRQSLVFLDAYVLNRPEAMIGQ------- 152 (199)
T ss_dssp CCBTTBCCHHHHHHHHHHTTS-SSCTTTTCEEEEEEECSSSSCSHH-HHHHHHHHHHHTTCEECCSSCEEECS-------
T ss_pred CccCCCcCHHHHHHHHHhccc-CCcccCCCEEEEEEeCCCCcccHH-HHHHHHHHHHHcCCEEcCCCeEEeec-------
Confidence 999999999999999999752 234689999999999876555544 46778888889999999742 22110
Q ss_pred ccCCCCCccceecCC-CCCCCCHHHHHHHHHHHHHHHHHHHHhhcC
Q 028841 158 VKGGSPYGAGTFAGD-GSRQPTELELEQAFHQGKHIAGIAKKLKGS 202 (203)
Q Consensus 158 ~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 202 (203)
....|..+ |. ..+++..++++.+.+++++.++++...
T Consensus 153 -------~~~~fd~~~g~-l~d~~~~~~l~~~~~~l~~~~~~~~~~ 190 (199)
T 4hs4_A 153 -------VTGKVDAQTLE-LSDVATREFLARQLDALAALARTLSPR 190 (199)
T ss_dssp -------GGGTBCSSSCC-BCCHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred -------hhhhcCCcCCC-cCCHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 01123322 43 447888999999999999999887653
No 22
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=99.91 E-value=9e-25 Score=163.60 Aligned_cols=167 Identities=16% Similarity=0.096 Sum_probs=118.3
Q ss_pred eEEEEEcCCc--chHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecccc
Q 028841 4 KVYIVYYSMY--GHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR 81 (203)
Q Consensus 4 kilii~~S~~--g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y 81 (203)
||++||+|++ |||+++++.+++.+.. +++++.+.+++.+..+..|...++.. ...+++.+||+|||+||+|
T Consensus 2 kilii~gS~~~~g~t~~la~~i~~~l~~------~~i~l~~~~lp~~~~~~~~~~~~~~~-~~~~~i~~aD~ii~~tP~y 74 (174)
T 3gfs_A 2 NMLVINGTPRKHGRTRIAASYIAALYHT------DLIDLSEFVLPVFNGEAEQSELLKVQ-ELKQRVTKADAIVLLSPEY 74 (174)
T ss_dssp -CEEEECCCCTTCHHHHHHHHHHHHTTC------EEEETTTSCCCCCCCCHHHHTCHHHH-HHHHHHHHCSSEEEEEECS
T ss_pred EEEEEECCCCCCCcHHHHHHHHHHhCcc------eEEeeecCCCCCCCChhhccCcHHHH-HHHHHHHHCCEEEEEcCCc
Confidence 8999999986 9999999999999853 46787765432111100000111111 1256899999999999999
Q ss_pred CCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccCC
Q 028841 82 FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGG 161 (203)
Q Consensus 82 ~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~ 161 (203)
|+++|+.+|+|||++.+. .++||++++++++|+..++.. ++.++...+...|+.+++.++..+
T Consensus 75 ~~~~p~~lk~~lD~l~~~----~~~gK~~~~~~~sgg~~g~~~-a~~~l~~~l~~~g~~~v~~~v~i~------------ 137 (174)
T 3gfs_A 75 HSGMSGALKNALDFLSSE----QFKYKPVALLAVAGGGDGGIN-ALNNMRTVMRGVYANVIPKQLVLK------------ 137 (174)
T ss_dssp SSSCCHHHHHHHHTCCHH----HHTTCEEEEEEECCSTTCSHH-HHHHHHHHHHHTTCEEEEEEEEEC------------
T ss_pred CCCCCHHHHHHHHHhCHh----hhCCCcEEEEEECCCChhHHH-HHHHHHHHHHHcCCEEecceEEec------------
Confidence 999999999999998642 589999999997665444443 367788889899999997643311
Q ss_pred CCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 028841 162 SPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKKL 199 (203)
Q Consensus 162 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~ 199 (203)
...|..++ ..+++++.++++++++++++.++.-
T Consensus 138 ----~~~f~~~~-~~~~~~~~~~l~~~~~~l~~~~~~~ 170 (174)
T 3gfs_A 138 ----PVHIDVEN-ATVAENIKESIKELVEELSMFAKAG 170 (174)
T ss_dssp ----GGGEETTT-TEECHHHHHHHHHHHHHHHHHHHC-
T ss_pred ----hhhcCCCC-CccCHHHHHHHHHHHHHHHHHHHcC
Confidence 11122111 3678899999999999999988653
No 23
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=99.91 E-value=9.4e-24 Score=151.62 Aligned_cols=133 Identities=23% Similarity=0.297 Sum_probs=110.3
Q ss_pred EEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCCc
Q 028841 5 VYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGM 84 (203)
Q Consensus 5 ilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~~ 84 (203)
++|+|+|++|||+++|+.|++.+.+ .|++++++++.+.+ .+++.++|.|||++|+|+++
T Consensus 2 i~iiy~S~tGnT~~~a~~i~~~l~~-~g~~v~~~~~~~~~--------------------~~~l~~~d~vi~g~p~y~~~ 60 (137)
T 2fz5_A 2 VEIVYWSGTGNTEAMANEIEAAVKA-AGADVESVRFEDTN--------------------VDDVASKDVILLGCPAMGSE 60 (137)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHHH-TTCCEEEEETTSCC--------------------HHHHHTCSEEEEECCCBTTT
T ss_pred EEEEEECCCChHHHHHHHHHHHHHh-CCCeEEEEEcccCC--------------------HHHHhcCCEEEEEccccCCC
Confidence 8999999999999999999999988 68999999988753 35788999999999999999
Q ss_pred cHHH--HHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccCCC
Q 028841 85 MAAQ--FKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGS 162 (203)
Q Consensus 85 ~~~~--~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~~ 162 (203)
+|+. +++|+|++.. .++||++++|+|+|+..+ .+...+.+.+...|+.+++ .+. ++
T Consensus 61 ~~~~~~~~~fl~~l~~-----~l~~k~~~~~~t~g~~~~---~~~~~l~~~l~~~g~~~~~-~~~----------~~--- 118 (137)
T 2fz5_A 61 ELEDSVVEPFFTDLAP-----KLKGKKVGLFGSYGWGSG---EWMDAWKQRTEDTGATVIG-TAI----------VN--- 118 (137)
T ss_dssp BCCHHHHHHHHHHHGG-----GCSSCEEEEEEEESSCCS---HHHHHHHHHHHHTTCEEEE-EEE----------EE---
T ss_pred CCCHHHHHHHHHHhhh-----hcCCCEEEEEEecCCCCc---hHHHHHHHHHHHCCCEEcC-cEE----------Ee---
Confidence 9998 9999999852 589999999999987522 2356688888889999984 222 12
Q ss_pred CCccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 028841 163 PYGAGTFAGDGSRQPTELELEQAFHQGKHIAG 194 (203)
Q Consensus 163 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~ 194 (203)
..|++ +++++++|++|++
T Consensus 119 ------------g~~~~--~~~~~~~~~~l~~ 136 (137)
T 2fz5_A 119 ------------EMPDN--APECKELGEAAAK 136 (137)
T ss_dssp ------------SSSSS--CTHHHHHHHHHHT
T ss_pred ------------eCCCh--HHHHHHHHHHHhc
Confidence 24554 8999999999864
No 24
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=99.91 E-value=5.4e-24 Score=154.94 Aligned_cols=140 Identities=20% Similarity=0.193 Sum_probs=112.7
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhh-cCeeEEeccccC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAE-ADGFVFGFPTRF 82 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~-aD~iiigsP~y~ 82 (203)
|++|+|+|++|||+++|+.|++.+.+ .|++++++++.+.++ +++.+ +|.|||++|+|+
T Consensus 2 ki~iiy~S~~Gnt~~~a~~i~~~l~~-~g~~v~~~~~~~~~~--------------------~~l~~~~d~ii~~~p~y~ 60 (147)
T 1f4p_A 2 KALIVYGSTTGNTEYTAETIARELAD-AGYEVDSRDAASVEA--------------------GGLFEGFDLVLLGCSTWG 60 (147)
T ss_dssp EEEEEEECSSSHHHHHHHHHHHHHHH-HTCEEEEEEGGGCCS--------------------TTTTTTCSEEEEEECEEC
T ss_pred eEEEEEECCcCHHHHHHHHHHHHHHh-cCCeeEEEehhhCCH--------------------HHhcCcCCEEEEEeCCCC
Confidence 89999999999999999999999987 688999999876532 35778 999999999995
Q ss_pred -Cc--cHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCcccccccc
Q 028841 83 -GM--MAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVK 159 (203)
Q Consensus 83 -~~--~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~ 159 (203)
+. +|+.+++|+|++... .+++|++++|+++++..+....+...+.+.|...|+.+++.++. +.
T Consensus 61 ~g~~~~p~~~~~fl~~l~~~----~l~~k~~~v~~~g~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~----------~~ 126 (147)
T 1f4p_A 61 DDSIELQDDFIPLFDSLEET----GAQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGAEIVQDGLR----------ID 126 (147)
T ss_dssp SSSCEECTTTHHHHHTGGGS----CCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSCCEE----------EE
T ss_pred CCCcCCChhHHHHHHHHHhc----ccCCCEEEEEeecCCChHHHHHHHHHHHHHHHHcCCeEhhcccc----------cc
Confidence 67 899999999998532 58899999999965433323344677888898999999875432 11
Q ss_pred CCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 028841 160 GGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAG 194 (203)
Q Consensus 160 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~ 194 (203)
..|++ +++++++++++|++
T Consensus 127 ---------------~~p~~-~~~~~~~~~~~l~~ 145 (147)
T 1f4p_A 127 ---------------GDPRA-ARDDIVGWAHDVRG 145 (147)
T ss_dssp ---------------SCGGG-GHHHHHHHHHHHHT
T ss_pred ---------------cCchh-HHHHHHHHHHHHHh
Confidence 25665 89999999999875
No 25
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=99.90 E-value=6.6e-24 Score=161.46 Aligned_cols=178 Identities=17% Similarity=0.106 Sum_probs=124.2
Q ss_pred ceEEEEEcCC--cchHHHHHHHHHHhcccCCCceEE-EEEcCCCCcHH-HhccCCCCCCCCCCCCChhhhhhcCeeEEec
Q 028841 3 TKVYIVYYSM--YGHVEKLAEEIKKGASSVEGVEAK-LWQVPETLPEE-VLGKMSAPPKSDVPIITPNELAEADGFVFGF 78 (203)
Q Consensus 3 ~kilii~~S~--~g~T~~la~~i~~~~~~~~g~~v~-~~~l~~~~~~~-~~~~~~~~~~~d~~~~~~~~l~~aD~iiigs 78 (203)
+||++|++|+ .++|+++++.+.+.+ + .|++++ ++|+.+.+... .... .|...++.. ...+++.+||+|||+|
T Consensus 5 mkil~I~GS~r~~s~t~~l~~~~~~~~-~-~g~~v~~~idL~~lP~~~~~~~~-~~~~~~~~~-~l~~~i~~AD~iv~~s 80 (193)
T 3svl_A 5 LQVVTLLGSLRKGSFNGMVARTLPKIA-P-ASMEVNALPSIADIPLYDADVQQ-EEGFPATVE-ALAEQIRQADGVVIVT 80 (193)
T ss_dssp EEEEEEECCCSTTCHHHHHHHHGGGTS-C-TTEEEEECCCSTTCCCCCHHHHH-HTCSCHHHH-HHHHHHHHSSEEEEEE
T ss_pred CEEEEEEccCCCCCHHHHHHHHHHHHc-c-CCCEEEEEEeHHHCCCCCccccc-ccCCCHHHH-HHHHHHHHCCEEEEEe
Confidence 4899999996 589999999987765 3 588999 99999864311 1110 111111111 1367999999999999
Q ss_pred cccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccc
Q 028841 79 PTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKV 158 (203)
Q Consensus 79 P~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~ 158 (203)
|+||+++|+.+|+||||+.+. ....+.||++++++++++..++.. +..+|+..|...|+.+++.+... +
T Consensus 81 P~y~~~~~~~lK~~iD~~~~~-~~~~~~gK~~~~~~~s~g~~gg~~-a~~~Lr~~l~~lg~~v~~~~~~~---------~ 149 (193)
T 3svl_A 81 PEYNYSVPGGLKNAIDWLSRL-PDQPLAGKPVLIQTSSMGVIGGAR-CQYHLRQILVFLDAMVMNKPEFM---------G 149 (193)
T ss_dssp CCBTTBCCHHHHHHHHHHHTS-TTCTTTTCEEEEEEECSSTTTTHH-HHHHHHHHHHHTTCEECCSSCEE---------E
T ss_pred cccCCCCCHHHHHHHHHHhhc-CccccCCCeEEEEEeCCCCcchHH-HHHHHHHHHHHCCCEEcCCCeEe---------e
Confidence 999999999999999999752 224689999999998765445543 46778888889999998643110 0
Q ss_pred cCCCCCccceecCC-CCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 028841 159 KGGSPYGAGTFAGD-GSRQPTELELEQAFHQGKHIAGIAKKLK 200 (203)
Q Consensus 159 ~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~l~~~~~~~~ 200 (203)
. .....|..+ |. ..+++..++++++.++++..+++++
T Consensus 150 ~----~~~~~f~~~~g~-l~d~~~~~~l~~~~~~~~~~~~~~~ 187 (193)
T 3svl_A 150 G----VIQNKVDPQTGE-VIDQGTLDHLTGQLTAFGEFIQRVK 187 (193)
T ss_dssp T----TGGGGEETTTTE-ECCHHHHHHHHHHHHHHHHHTC---
T ss_pred c----chhhhcCCCCCc-CCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 0 001123332 43 4588999999999999999887643
No 26
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=99.89 E-value=1.2e-22 Score=170.33 Aligned_cols=147 Identities=27% Similarity=0.359 Sum_probs=122.4
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccC
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRF 82 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~ 82 (203)
+|++|+|+|.+|||+++|+.|++.+.+ .|++++++++.+.+...+ .+++.+||+||||||+|+
T Consensus 257 ~k~~i~~~S~~gnT~~la~~i~~~l~~-~g~~v~~~~~~~~~~~~~----------------~~~l~~~d~iiigsP~y~ 319 (404)
T 2ohh_A 257 ERVTVIYDTMHGSTRKMAHAIAEGAMS-EGVDVRVYCLHEDDRSEI----------------VKDILESGAIALGAPTIY 319 (404)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHHHT-TTCEEEEEETTTSCHHHH----------------HHHHHTCSEEEEECCEET
T ss_pred CcEEEEEECCChHHHHHHHHHHHHHHh-CCCeEEEEECCCCCHHHH----------------HHHHHHCCEEEEECcccc
Confidence 489999999999999999999999998 789999999987654322 347899999999999999
Q ss_pred CccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccCCC
Q 028841 83 GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGS 162 (203)
Q Consensus 83 ~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~~ 162 (203)
+++|+.+|+|+|++.+.+... ++||++++|+++|+.+++ ...+.+.|...|+.+++. +. +.
T Consensus 320 ~~~~~~~k~~ld~l~~~~~~~-l~~k~~~~~~~~g~~~~a----~~~l~~~l~~~g~~~~~~-~~----------~~--- 380 (404)
T 2ohh_A 320 DEPYPSVGDLLMYLRGLKFNR-TLTRKALVFGSMGGNGGA----TGTMKELLAEAGFDVACE-EE----------VY--- 380 (404)
T ss_dssp TEECTHHHHHHHHHHHHCGGG-TCCEEEEEEEEESSSCCH----HHHHHHHHHHTTEEEEEE-EE----------EE---
T ss_pred ccchHHHHHHHHHhhhccccc-cCCCEEEEEEecCCCChh----HHHHHHHHHHCCCEEEeE-EE----------Ee---
Confidence 999999999999987554333 699999999999886443 345788888899999874 22 11
Q ss_pred CCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028841 163 PYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAK 197 (203)
Q Consensus 163 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~ 197 (203)
..|+++++++++++++++++.++
T Consensus 381 ------------~~~~~~~~~~~~~~~~~~~~~~~ 403 (404)
T 2ohh_A 381 ------------YVPTGDELDACFEAGRKLAAEIR 403 (404)
T ss_dssp ------------SSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ------------eCCCHHHHHHHHHHHHHHHHHHh
Confidence 36789999999999999998764
No 27
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=99.89 E-value=1.2e-22 Score=156.03 Aligned_cols=141 Identities=18% Similarity=0.108 Sum_probs=100.7
Q ss_pred CCceEEEEEcCCc----chHHHHHHHHHHhcccCCC--ceEEEEEcC--CCCcHHHhcc----CC---------CC----
Q 028841 1 MATKVYIVYYSMY----GHVEKLAEEIKKGASSVEG--VEAKLWQVP--ETLPEEVLGK----MS---------AP---- 55 (203)
Q Consensus 1 Mm~kilii~~S~~----g~T~~la~~i~~~~~~~~g--~~v~~~~l~--~~~~~~~~~~----~~---------~~---- 55 (203)
|| |||||++|++ |+|++|++.+.+++++ .| .+++++||. +.+++.|..+ .. |.
T Consensus 1 M~-kilii~gS~r~~~~s~t~~la~~~~~~~~~-~g~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 78 (208)
T 2hpv_A 1 MS-KLLVVKAHPLTKEESRSVRALETFLASYRE-TNPSDEIEILDVYAPETNMPEIDEELLSAWGALRAGAAFETLSENQ 78 (208)
T ss_dssp -C-EEEEEECCSSCTTTCHHHHHHHHHHHHHHH-HCTTSEEEEEETTCGGGCCCCCCHHHHHHHHHHHHTCCGGGSCHHH
T ss_pred CC-eEEEEEecCCCCCCCHHHHHHHHHHHHHHH-hCCCCeEEEeeCCcccCCCCcCCHHHHHhhcCcccccccccCCHHH
Confidence 55 9999999975 8999999999999987 45 899999999 7553221100 00 10
Q ss_pred --CCCCCCCCChhhhhhcCeeEEeccccCCccHHHHHHHHHHhccc---c------cccCCCCCceEEEEecCCCCCChH
Q 028841 56 --PKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGL---W------RTQQLAGKPAGMFYSTGSQGGGQE 124 (203)
Q Consensus 56 --~~~d~~~~~~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~---~------~~~~l~gK~~~~~~t~g~~~~~~~ 124 (203)
..+++. ...+++.+||+|||+||+||+++|+.+|+||||+... + ..+.++||++++++|+|+..+...
T Consensus 79 ~~~~~~~~-~~~~~l~~aD~iv~~~P~y~~~~pa~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~~~~ 157 (208)
T 2hpv_A 79 QQKVARFN-ELTDQFLSADKVVIANPMWNLNVPTRLKAWVDTINVAGKTFQYTAEGPKPLTSGKKALHIQSNGGFYEGKD 157 (208)
T ss_dssp HHHHHHHH-HHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEEETTEEEESCCSCEEEEEEEESSCCCSCS
T ss_pred HhhHHHHH-HHHHHHHhCCEEEEEeccccCCCCHHHHHHHHHHhcCCcEeecCCCCCccCCCCCeEEEEEecCCCCCCcc
Confidence 011111 1256899999999999999999999999999998642 1 113579999999998876544312
Q ss_pred HHHHHHHHHHHHcCcEEecC
Q 028841 125 TTALTAITQLVHHGMIFVPI 144 (203)
Q Consensus 125 ~~~~~l~~~l~~~g~~~v~~ 144 (203)
.....+...+...|+.+++.
T Consensus 158 ~~~~~l~~~~~~~G~~~~~~ 177 (208)
T 2hpv_A 158 FASQYIKAILNFIGVDQVDG 177 (208)
T ss_dssp HHHHHHHHHHHHTTCCEEEE
T ss_pred hHHHHHHHHHHhCCCCeeeE
Confidence 22455667777889888764
No 28
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=99.89 E-value=5.2e-22 Score=147.72 Aligned_cols=161 Identities=16% Similarity=0.174 Sum_probs=116.9
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccC-
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRF- 82 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~- 82 (203)
|++|+|+|++|||+++|+.|++.+.. . ++++++++.+.+ .+++.++|.||||+|+|+
T Consensus 2 kilIvY~S~tGnT~~vA~~ia~~l~~-~-~~v~~~~~~~~~--------------------~~~l~~~d~ii~g~pty~~ 59 (169)
T 1czn_A 2 KIGLFYGTQTGVTQTIAESIQQEFGG-E-SIVDLNDIANAD--------------------ASDLNAYDYLIIGCPTWNV 59 (169)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHTS-T-TTEEEEEGGGCC--------------------GGGGGGCSEEEEECCEETT
T ss_pred eEEEEEECCCcHHHHHHHHHHHHhCc-c-cceEEEEhhhCC--------------------HhHHhhCCEEEEEecccCC
Confidence 89999999999999999999999976 4 578999987643 347889999999999998
Q ss_pred CccHHHHHHHHHHhcccccccCCCCCceEEEEecCCC-CC-ChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccC
Q 028841 83 GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQ-GG-GQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKG 160 (203)
Q Consensus 83 ~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~-~~-~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~ 160 (203)
|.+|+.++.|++++.. ..++||++++|++++.. .+ ....++..+.+.|...|+.+++...+.|+.......+..
T Consensus 60 g~~p~~~~~f~~~l~~----~~l~gk~~~~f~t~~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~g~~~~~s~~~~~ 135 (169)
T 1czn_A 60 GELQSDWEGIYDDLDS----VNFQGKKVAYFGAGDQVGYSDNFQDAMGILEEKISSLGSQTVGYWPIEGYDFNESKAVRN 135 (169)
T ss_dssp TEECHHHHHHGGGGGG----SCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCEECTTCCCSCCTTEET
T ss_pred CcCCHHHHHHHHHhhh----hccCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEEEEEecCCCcceecchheeC
Confidence 7799999999998853 26899999999998663 22 233446778888888999999853322321100000110
Q ss_pred CCCCccceecC--CCCCCCCHHHHHHHHHHHHHHHHHH
Q 028841 161 GSPYGAGTFAG--DGSRQPTELELEQAFHQGKHIAGIA 196 (203)
Q Consensus 161 ~~~~g~~~~~~--~~~~~~~~~~~~~~~~~g~~l~~~~ 196 (203)
+.|.+ ....++++++.+++++|++.+.+.+
T Consensus 136 ------~~~~gl~~~~~~~~~~~~~~~~~w~~~~~~~~ 167 (169)
T 1czn_A 136 ------NQFVGLAIDEDNQPDLTKNRIKTWVSQLKSEF 167 (169)
T ss_dssp ------TEESSEEECTTTCGGGHHHHHHHHHHHHHHHT
T ss_pred ------CeeeeeeecCCCccccCHHHHHHHHHHHHHHh
Confidence 01111 0112456788999999999987653
No 29
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=99.81 E-value=9e-25 Score=167.03 Aligned_cols=177 Identities=16% Similarity=0.100 Sum_probs=125.4
Q ss_pred eEEEEEcCCc--chHHHHHHHHHHhcccCCCceEEEE-EcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 4 KVYIVYYSMY--GHVEKLAEEIKKGASSVEGVEAKLW-QVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 4 kilii~~S~~--g~T~~la~~i~~~~~~~~g~~v~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
||++|++|++ |+|+++++.+++.+.+ |++++++ |+.+.+. .+.....|...++.. ...+++.+||+|||+||+
T Consensus 8 kIliI~gS~r~~s~t~~la~~~~~~~~~--g~~v~~i~dl~~lp~-~~~~~~~~~~~~~~~-~~~~~i~~AD~iIi~tP~ 83 (199)
T 3s2y_A 8 HFVTLLGSLRKASFNAAVARALPEIAPE--GIAITPLGSIGTFPH-YSQDVQEEGFPAPVL-TMAQQIATADAVVIVTPE 83 (199)
Confidence 9999999974 7999999999999875 8899999 9987532 111111122222222 236789999999999999
Q ss_pred cCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecC-CCcCCCCcccccccc
Q 028841 81 RFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPI-GYTFGAGMFEMEKVK 159 (203)
Q Consensus 81 y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~-~~~~~~~~~~~~~~~ 159 (203)
||+++|+.+|+|||++.+.+.. .+.||++++++++++..++.. +..+|...|...|+.+++. .+..+.
T Consensus 84 Y~~s~p~~lK~~iD~l~~~~~~-~l~gK~v~~v~tsgg~~g~~~-a~~~Lr~~l~~lg~~~v~~~~v~i~~--------- 152 (199)
T 3s2y_A 84 YNYSVPGVLKNAIDWLSRVSPQ-PLAGKPVALVTASPGMIGGAR-AQYHLRQSLVFLDAYVLNRPEAMIGQ--------- 152 (199)
Confidence 9999999999999999764322 589999999998755444432 3566778888889999876 332210
Q ss_pred CCCCCccceecCC-CCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 028841 160 GGSPYGAGTFAGD-GSRQPTELELEQAFHQGKHIAGIAKKLKG 201 (203)
Q Consensus 160 ~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 201 (203)
....|..+ |. ..+++..++++.+.+++++.+++.+.
T Consensus 153 -----~~~~f~~~~g~-l~d~~~~~~l~~~~~~~~~~~~~~~~ 189 (199)
T 3s2y_A 153 -----VTGKVDAQTLE-LSDVATREFLARQLDALAALARTLSP 189 (199)
Confidence 01123323 43 34567788899999999888876544
No 30
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=99.88 E-value=7.1e-22 Score=150.57 Aligned_cols=142 Identities=18% Similarity=0.107 Sum_probs=101.6
Q ss_pred CCceEEEEEcCCc---chHHHHHHHHHHhcccCCC--ceEEEEEcCCCCcHHHhc---c-CCCCCC-------CCCC--C
Q 028841 1 MATKVYIVYYSMY---GHVEKLAEEIKKGASSVEG--VEAKLWQVPETLPEEVLG---K-MSAPPK-------SDVP--I 62 (203)
Q Consensus 1 Mm~kilii~~S~~---g~T~~la~~i~~~~~~~~g--~~v~~~~l~~~~~~~~~~---~-~~~~~~-------~d~~--~ 62 (203)
|| ||||||+|++ |||+++++.+++++++ .| .+++++|+.+.+++.+.. + +..+.. ++.. .
T Consensus 1 Mm-kilii~~S~~~~~s~t~~la~~~~~~l~~-~g~~~~v~~~dl~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 78 (201)
T 1t5b_A 1 MS-KVLVLKSSILAGYSQSGQLTDYFIEQWRE-KHVADEITVRDLAANPVPVLDGELVGAMRPGDAPLTPRQQDALALSD 78 (201)
T ss_dssp CC-EEEEEECCSSGGGCHHHHHHHHHHHHHHH-HCTTCEEEEEETTTSCCCCCCHHHHHHTC--CCCCCHHHHHHHHHHH
T ss_pred CC-eEEEEEeCCCCCCChHHHHHHHHHHHHHH-hCCCCeEEEEeccCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHH
Confidence 65 9999999976 8999999999999987 44 899999998865422111 0 111111 1100 0
Q ss_pred CChhhhhhcCeeEEeccccCCccHHHHHHHHHHhccccc---------ccCCCCCceEEEEecCCCCCC--hHHHHHHHH
Q 028841 63 ITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWR---------TQQLAGKPAGMFYSTGSQGGG--QETTALTAI 131 (203)
Q Consensus 63 ~~~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~---------~~~l~gK~~~~~~t~g~~~~~--~~~~~~~l~ 131 (203)
...+++.+||+|||+||+||+++|+.+|+||||+..... ...++||++++|+|+|+..++ ......++.
T Consensus 79 ~~~~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~l~ 158 (201)
T 1t5b_A 79 ELIAELKAHDVIVIAAPMYNFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRGGIHKDTPTDLIAPYLK 158 (201)
T ss_dssp HHHHHHHHCSEEEEECCCBTTBCCHHHHHHHHHHCCBTTTEEEETTEEEESSCSCEEEEEEECSSCCTTSTTCCHHHHHH
T ss_pred HHHHHHHhCCEEEEEeCcccCcCCHHHHHHHHHheeCCCceecCCCCCccCCCCCeEEEEEecCCCCCCCchhhHHHHHH
Confidence 124689999999999999999999999999999864210 135899999999998875332 112345577
Q ss_pred HHHHHcCcEEecC
Q 028841 132 TQLVHHGMIFVPI 144 (203)
Q Consensus 132 ~~l~~~g~~~v~~ 144 (203)
..+...|+.+++.
T Consensus 159 ~~l~~~G~~~~~~ 171 (201)
T 1t5b_A 159 VFLGFIGITDVNF 171 (201)
T ss_dssp HHHHHTTCCCEEE
T ss_pred HHHhhcCcceeEE
Confidence 7788889888764
No 31
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=99.88 E-value=1.1e-22 Score=154.22 Aligned_cols=132 Identities=17% Similarity=0.064 Sum_probs=99.3
Q ss_pred eEEEEEcCCc--chHHHHHHHHHHhcccC-----CCceEEEEEcCCCCcHHHhccCCCC---------CCCCCCCCChhh
Q 028841 4 KVYIVYYSMY--GHVEKLAEEIKKGASSV-----EGVEAKLWQVPETLPEEVLGKMSAP---------PKSDVPIITPNE 67 (203)
Q Consensus 4 kilii~~S~~--g~T~~la~~i~~~~~~~-----~g~~v~~~~l~~~~~~~~~~~~~~~---------~~~d~~~~~~~~ 67 (203)
||+|||+|++ |||+++++.+++++++. .|.+++++|+.+.+++.|..+..|. ..+|......++
T Consensus 2 kilii~gS~r~~~~t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (191)
T 1t0i_A 2 KVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSRI 81 (191)
T ss_dssp EEEEEECCCCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHHHH
T ss_pred eEEEEeCCCCCCCchHHHHHHHHHHHHHhhccCCCCceEEEEehhhcCCCCCCCccccccccccCcccCCcHHHHHHHHH
Confidence 8999999986 99999999999999872 1789999999875443322211111 111110112578
Q ss_pred hhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEec
Q 028841 68 LAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 143 (203)
Q Consensus 68 l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~ 143 (203)
+.+||+|||+||+||+++|+.+|+|||++.. .++||+++++++ |+.+ +. .++.++...+...|+.+++
T Consensus 82 l~~aD~iI~~sP~y~~~~p~~lK~~iD~~~~-----~l~gK~~~~~~~-G~~~-~~-~~~~~l~~~l~~~G~~~~~ 149 (191)
T 1t0i_A 82 VNALDIIVFVTPQYNWGYPAALKNAIDRLYH-----EWHGKPALVVSY-GGHG-GS-KCNDQLQEVLHGLKMNVIG 149 (191)
T ss_dssp HHTCSEEEEEEECBTTBCCHHHHHHHHTCST-----TTTTCEEEEEEE-ETTT-TH-HHHHHHHHHHHHTTCEEEE
T ss_pred HHhCCEEEEEeceECCCCCHHHHHHHHHHHh-----hcCCCEEEEEEe-CCcc-hh-hHHHHHHHHHHHCCCEEcc
Confidence 9999999999999999999999999999863 488999998865 5543 32 3467788888889999987
No 32
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=99.88 E-value=3.2e-21 Score=143.40 Aligned_cols=160 Identities=16% Similarity=0.191 Sum_probs=115.5
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccC-
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRF- 82 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~- 82 (203)
|++|+|+|++|||+++|+.|++.+.+ . +++++++.+.+ .+++.++|.||||+|+|+
T Consensus 3 kilIiY~S~tGnT~~vA~~ia~~l~~-~--~v~~~~~~~~~--------------------~~~l~~~d~ii~g~p~y~~ 59 (169)
T 1obo_A 3 KIGLFYGTQTGKTESVAEIIRDEFGN-D--VVTLHDVSQAE--------------------VTDLNDYQYLIIGCPTLNI 59 (169)
T ss_dssp SEEEEECCSSSHHHHHHHHHHHHHCT-T--TEEEEETTTCC--------------------GGGGGGCSEEEEEEEEETT
T ss_pred eEEEEEECCCchHHHHHHHHHHHhCc-C--CcEEEEcccCC--------------------HHHHhhCCEEEEEEeeCCC
Confidence 89999999999999999999999976 3 78889987653 346889999999999996
Q ss_pred CccHHHHHHHHHHhcccccccCCCCCceEEEEecCCC-CC-ChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccC
Q 028841 83 GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQ-GG-GQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKG 160 (203)
Q Consensus 83 ~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~-~~-~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~ 160 (203)
+.+|+.++.|++++.. ..++||++++|++++.. .+ ....++..+.+.|...|+.+++.....|.....+..+.+
T Consensus 60 g~~p~~~~~fl~~l~~----~~l~~k~~~~f~tg~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~g~~~~~s~~~~~ 135 (169)
T 1obo_A 60 GELQSDWEGLYSELDD----VDFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVGYWSTDGYDFNDSKALRN 135 (169)
T ss_dssp TEECHHHHHHHTTGGG----CCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCEECTTCCCSCCTTEET
T ss_pred CcCCHHHHHHHHHhhh----cCcCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEeecCCCcccccchhhcC
Confidence 7788889999998853 26899999999998753 22 133446778888988999999864333431110000110
Q ss_pred CCCCccceecC--CCCCCCCHHHHHHHHHHHHHHHHHH
Q 028841 161 GSPYGAGTFAG--DGSRQPTELELEQAFHQGKHIAGIA 196 (203)
Q Consensus 161 ~~~~g~~~~~~--~~~~~~~~~~~~~~~~~g~~l~~~~ 196 (203)
+ .|.+ .+...+++.+.+++++|++.|.+.+
T Consensus 136 ~------~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~l 167 (169)
T 1obo_A 136 G------KFVGLALDEDNQSDLTDDRIKSWVAQLKSEF 167 (169)
T ss_dssp T------EESSEEECTTTCGGGHHHHHHHHHHHHHHHH
T ss_pred C------ceeeEEeeCCCccccCHHHHHHHHHHHHHHh
Confidence 1 1111 0111345678899999999987654
No 33
>2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus}
Probab=99.87 E-value=1.2e-21 Score=147.67 Aligned_cols=164 Identities=23% Similarity=0.168 Sum_probs=116.7
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
|| |++|+|+|++|||+++|+.|++.+.. . ++++++++.+.+ .+++.++|.||||+|+
T Consensus 1 M~-kilIiY~S~tGnT~~iA~~ia~~l~~-~-~~v~~~~~~~~~--------------------~~~l~~~d~ii~g~pt 57 (182)
T 2wc1_A 1 MA-KIGLFFGSDTGTTRKIAKQIKDMFDD-E-VMAKPLNVNRAD--------------------VADFMAYDFLILGTPT 57 (182)
T ss_dssp CC-SEEEEECCSSSHHHHHHHHHHTTSCT-T-TBCCCEEGGGCC--------------------HHHHHHCSEEEEEEEC
T ss_pred Cc-EEEEEEECCCchHHHHHHHHHHHhcc-c-CceEEEEcccCC--------------------HHHHhhCCeEEEEEee
Confidence 54 99999999999999999999999976 3 667788876542 3578899999999999
Q ss_pred cC-CccH--------HHHHHHHHHhcccccccCCCCCceEEEEecCCC-CC-ChHHHHHHHHHHHHHcCcEEecCCCcCC
Q 028841 81 RF-GMMA--------AQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQ-GG-GQETTALTAITQLVHHGMIFVPIGYTFG 149 (203)
Q Consensus 81 y~-~~~~--------~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~-~~-~~~~~~~~l~~~l~~~g~~~v~~~~~~~ 149 (203)
|+ |.+| ..++.|++++... .++||++++|++++.. .+ ....+...+.+.|...|+.+++...++|
T Consensus 58 y~~G~~pg~~~~~~~~~~~~f~~~l~~~----~l~gk~~avfg~g~~~~~~~~f~~a~~~l~~~l~~~G~~~v~~~~~~g 133 (182)
T 2wc1_A 58 LGDGQLPGLSANAASESWEEFLPRIADQ----DFSGKTIALFGLGDQVTYPLEFVNALFFLHEFFSDRGANVVGRWPAKG 133 (182)
T ss_dssp BTTTBCSSGGGTCSSCCHHHHGGGGTTC----CCTTCEEEEEEECCTTTCTTSTTTHHHHHHHHHHTTTCEEECCEECTT
T ss_pred CCCCCCCccccccchhHHHHHHHHhhhc----cCCCCEEEEEEeCCCcccchhHHHHHHHHHHHHHHCCCEEEEeecCCC
Confidence 99 8899 8899999988532 6889999999998753 21 2223356688888889999998765555
Q ss_pred CCccccccccCCCCCccceecCCCCCCC--CHHHHHHHHHHHHHHHHHHH
Q 028841 150 AGMFEMEKVKGGSPYGAGTFAGDGSRQP--TELELEQAFHQGKHIAGIAK 197 (203)
Q Consensus 150 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~g~~l~~~~~ 197 (203)
.+......+..+ .|.|.+...+ .+.+.++++.|.+.|.+.+.
T Consensus 134 ~~~~~~~~~~~~------~~~gl~~d~~~~~~~~~~~~~~w~~~l~~~l~ 177 (182)
T 2wc1_A 134 YGFEDSLAVVEG------EFLGLALDQDNQAALTPERLKGWLSLIAADFG 177 (182)
T ss_dssp SCCSCCTTEETT------EESSEEECTTTCGGGHHHHHHHHHHHTHHHHT
T ss_pred cCcccchhhhcC------ceeeeeccCCCCccccHHHHHHHHHHHHHHHh
Confidence 421111111111 1112100122 24478889999999877654
No 34
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=99.86 E-value=1.1e-21 Score=145.95 Aligned_cols=146 Identities=12% Similarity=0.008 Sum_probs=111.6
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecccc
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR 81 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y 81 (203)
|+|++|+|+|++|||+++|+.|++.+.+ .|++++++++.+.+ ...+.++|.||||+|+|
T Consensus 9 ~~ki~I~Y~S~tGnT~~~A~~ia~~l~~-~g~~v~~~~~~~~~--------------------~~~l~~~d~ii~g~pt~ 67 (167)
T 1ykg_A 9 MPGITIISASQTGNARRVAEALRDDLLA-AKLNVKLVNAGDYK--------------------FKQIASEKLLIVVTSTQ 67 (167)
T ss_dssp ---CEEEEECSSSHHHHHHHHHHHHHHH-HTCCCEEEEGGGCC--------------------GGGGGGCSEEEEEEECB
T ss_pred CCeEEEEEECCchHHHHHHHHHHHHHHH-CCCceEEeehhhCC--------------------HHHhccCCeEEEEEccc
Confidence 3489999999999999999999999987 68889999987643 34678899999999999
Q ss_pred -CCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccC
Q 028841 82 -FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKG 160 (203)
Q Consensus 82 -~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~ 160 (203)
+|.+|..++.|++++... ....+++|++++|++++...+....+...+.+.|...|+.+++...
T Consensus 68 g~G~~p~~~~~f~~~l~~~-~~~~l~~k~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~~v~~~~-------------- 132 (167)
T 1ykg_A 68 GEGEPPEEAVALHKFLFSK-KAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRV-------------- 132 (167)
T ss_dssp GGGBCCGGGHHHHHHHTST-TCCCCTTCEEEEEEECCTTSSSTTHHHHHHHHHHHHHTCEESSCCE--------------
T ss_pred CCCcCChhHHHHHHHHHhc-cccccCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHCCCeEeecce--------------
Confidence 799999999999998531 0125789999999976543322223356688888888988876431
Q ss_pred CCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028841 161 GSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKK 198 (203)
Q Consensus 161 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~ 198 (203)
..++++.+.+++|+++|.+.++.
T Consensus 133 ---------------~~d~~~~~~~~~w~~~l~~~l~~ 155 (167)
T 1ykg_A 133 ---------------DADVEYQAAASEWRARVVDALKS 155 (167)
T ss_dssp ---------------EECTTCHHHHHHHHHHHHHHHHT
T ss_pred ---------------ecCCCcHHHHHHHHHHHHHHHHh
Confidence 22345788899999999887754
No 35
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=99.86 E-value=1.1e-20 Score=141.40 Aligned_cols=162 Identities=19% Similarity=0.205 Sum_probs=116.3
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecccc-C
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR-F 82 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y-~ 82 (203)
|++|+|+|++|||+++|+.|++.+.. . .++++++.+.. .+++.++|.||||+|+| .
T Consensus 2 ki~IvY~S~tGnT~~iA~~Ia~~l~~-~--~v~i~~~~~~~--------------------~~~l~~~d~ii~g~pt~~~ 58 (175)
T 1ag9_A 2 ITGIFFGSDTGNTENIAKMIQKQLGK-D--VADVHDIAKSS--------------------KEDLEAYDILLLGIPTWYY 58 (175)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHCT-T--TEEEEEGGGCC--------------------HHHHHTCSEEEEECCEETT
T ss_pred EEEEEEECCCchHHHHHHHHHHHhcc-C--ceEEEEcccCC--------------------hhHhhhCCEEEEEEeecCC
Confidence 89999999999999999999999976 2 67888886542 35788999999999997 5
Q ss_pred CccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCC--hHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccC
Q 028841 83 GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGG--QETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKG 160 (203)
Q Consensus 83 ~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~--~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~ 160 (203)
|.+|+.++.|++++... .++||++++|++++..+.+ ...++..+.+.|...|+.+++...+.|+....+..+..
T Consensus 59 G~~p~~~~~f~~~l~~~----~l~gk~vavfg~g~~~~~~~~f~~a~~~l~~~l~~~G~~~v~~~~~~g~~~~~s~~~~~ 134 (175)
T 1ag9_A 59 GEAQCDWDDFFPTLEEI----DFNGKLVALFGCGDQEDYAEYFCDALGTIRDIIEPRGATIVGHWPTAGYHFEASKGLAD 134 (175)
T ss_dssp TEECHHHHHHHHHHTTC----CCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHTTTTCEECCCEECTTCCCSCCSCEEE
T ss_pred CcChHHHHHHHhhhhhc----ccCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEEecCCCcccccchheee
Confidence 89999999999998532 5899999999997653211 22346778888888999999864433432111000100
Q ss_pred CCCCccceecC--CCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028841 161 GSPYGAGTFAG--DGSRQPTELELEQAFHQGKHIAGIAK 197 (203)
Q Consensus 161 ~~~~g~~~~~~--~~~~~~~~~~~~~~~~~g~~l~~~~~ 197 (203)
...|.+ .+...+++.+.+++++|+++|.+.+.
T Consensus 135 -----~~~~~gl~~~~~~~~~~~~~~i~~w~~~i~~~~~ 168 (175)
T 1ag9_A 135 -----DDHFVGLAIDEDRQPELTAERVEKWVKQISEELH 168 (175)
T ss_dssp -----TTEESSEEECTTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred -----CCeEEeeecCCCCcccccHHHHHHHHHHHHHHhh
Confidence 001222 11124567789999999999987653
No 36
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=99.86 E-value=3e-22 Score=154.41 Aligned_cols=143 Identities=17% Similarity=0.099 Sum_probs=100.5
Q ss_pred CCceEEEEEcCCc----chHHHHHHHHHHhcccC-CCceEEEEEcCCCCcHHHhcc-----C-----CCCCCC------C
Q 028841 1 MATKVYIVYYSMY----GHVEKLAEEIKKGASSV-EGVEAKLWQVPETLPEEVLGK-----M-----SAPPKS------D 59 (203)
Q Consensus 1 Mm~kilii~~S~~----g~T~~la~~i~~~~~~~-~g~~v~~~~l~~~~~~~~~~~-----~-----~~~~~~------d 59 (203)
||+|||+|++|+. ++|.++++.+.+++++. .|.+++++||.+.++ .++.+ . .++..+ +
T Consensus 3 mM~kiLiI~gSpr~~~~S~s~~l~~~~~~~~~~~~~g~ev~~~dL~~~~~-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (211)
T 3p0r_A 3 AMTKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEEL-PYVGVDMINGTFKAGKGFDLTEEEAKAVA 81 (211)
T ss_dssp -CCEEEEEECCCSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEEGGGSCC-CCCCHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred ccCEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCC-CcCCHHHHHhhhccCccccCCHHHHhhHH
Confidence 6779999999965 68999999999999862 288999999987654 12111 0 011100 1
Q ss_pred CCCCChhhhhhcCeeEEeccccCCccHHHHHHHHHHhcccc---------cccCCCCCceEEEEecCCCCCCh-----HH
Q 028841 60 VPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLW---------RTQQLAGKPAGMFYSTGSQGGGQ-----ET 125 (203)
Q Consensus 60 ~~~~~~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~---------~~~~l~gK~~~~~~t~g~~~~~~-----~~ 125 (203)
......+++.+||+|||++|+||+++|+.+|+||||+.... ..+.++||++.+++|+|+..++. ..
T Consensus 82 ~~~~~~~~~~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~g~~g~l~gK~~~~i~t~g~~~~~~~~~~~~~ 161 (211)
T 3p0r_A 82 VADKYLNQFLEADKVVFGFPLWNLTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKIALLNARGGVYSEGPAAEVEM 161 (211)
T ss_dssp HHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEECCTTCCEESCTTCEEEEEEEESSCCSSSTTGGGCB
T ss_pred HHHHHHHHHHhCCEEEEEcChhcccCCHHHHHHHHHHhccCceeccCCCCCccCCCCCEEEEEEeCCCCCCCCCccchhH
Confidence 11113578999999999999999999999999999986431 12358999999999987763321 11
Q ss_pred HHHHHHHHHHHcCcEEecC
Q 028841 126 TALTAITQLVHHGMIFVPI 144 (203)
Q Consensus 126 ~~~~l~~~l~~~g~~~v~~ 144 (203)
...++...|...|+..+..
T Consensus 162 ~~~~l~~~l~~~G~~~v~~ 180 (211)
T 3p0r_A 162 AVKYVASMMGFFGATNMET 180 (211)
T ss_dssp SHHHHHHHHHHTTCCSCEE
T ss_pred HHHHHHHHHHhCCCCeeeE
Confidence 1345667777778776653
No 37
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=99.86 E-value=2.6e-21 Score=147.49 Aligned_cols=137 Identities=17% Similarity=0.162 Sum_probs=100.4
Q ss_pred eEEEEEcCC--cchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCC------CCCCCCCCChhhhhhcCeeE
Q 028841 4 KVYIVYYSM--YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAP------PKSDVPIITPNELAEADGFV 75 (203)
Q Consensus 4 kilii~~S~--~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~------~~~d~~~~~~~~l~~aD~ii 75 (203)
|||+|++|+ .++|+++++.+.+++ + .|.+++++||.+.++..++.+..|. ..++. ....+++.+||+||
T Consensus 2 kiLiI~gspr~~s~t~~l~~~~~~~~-~-~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~l~~AD~iV 78 (196)
T 3lcm_A 2 KILIVYTHPNPTSFNAEILKQVQTNL-S-KEHTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEM-EKYRDLVTWADHLI 78 (196)
T ss_dssp EEEEEECCSCTTSHHHHHHHHHHHHS-C-TTSEEEEEETTTTTCCCCCCCCSSSCGGGGGGCGGG-HHHHHHHHHCSEEE
T ss_pred EEEEEEeCCCCCChHHHHHHHHHHHh-c-CCCeEEEEEcccCCCCccCChHHHHhhcCCCCcHHH-HHHHHHHHhCCEEE
Confidence 999999996 468999999999999 6 7899999999987654444432221 11222 11367899999999
Q ss_pred EeccccCCccHHHHHHHHHHhccc---cc------ccCCCCCceEEEEecCCC--CC----ChHHHHHHHHHHHHHcCcE
Q 028841 76 FGFPTRFGMMAAQFKAFLDATGGL---WR------TQQLAGKPAGMFYSTGSQ--GG----GQETTALTAITQLVHHGMI 140 (203)
Q Consensus 76 igsP~y~~~~~~~~k~~ld~~~~~---~~------~~~l~gK~~~~~~t~g~~--~~----~~~~~~~~l~~~l~~~g~~ 140 (203)
|++|+||+++|+.+|+||||+... +. .+.++||++.+++|+|++ .. +.. . ..+...+...|+.
T Consensus 79 ~~~P~y~~~~pa~LK~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~y~~~~~~~~-~-~~l~~~l~~~G~~ 156 (196)
T 3lcm_A 79 FIFPIWWSGMPAILKGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTHNTPSFAMPFVQDYG-K-VLKKQILKPCAIS 156 (196)
T ss_dssp EEEECBTTBCCHHHHHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEECSSCGGGTTTSSCTT-H-HHHHHTTGGGTCC
T ss_pred EECchhhccccHHHHHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcCCCchhhHhhhccCH-H-HHHHHHHHhcCCc
Confidence 999999999999999999998543 11 136899999999998875 10 111 1 3355556667877
Q ss_pred EecCC
Q 028841 141 FVPIG 145 (203)
Q Consensus 141 ~v~~~ 145 (203)
.++..
T Consensus 157 ~~~~~ 161 (196)
T 3lcm_A 157 PVKLT 161 (196)
T ss_dssp CEEEE
T ss_pred eeeEE
Confidence 76543
No 38
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=99.86 E-value=5.5e-21 Score=160.04 Aligned_cols=147 Identities=26% Similarity=0.283 Sum_probs=121.8
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccC
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRF 82 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~ 82 (203)
+|++|+|+|++|||+++|+.|++.+.+ .|.+++++++.+.+..++ .+++.+||+||||||+|+
T Consensus 253 ~kv~i~y~S~~Gnt~~lA~~i~~~l~~-~g~~v~~~~~~~~~~~~~----------------~~~~~~~d~ii~gsp~~~ 315 (402)
T 1e5d_A 253 NKVVIFYDSMWHSTEKMARVLAESFRD-EGCTVKLMWCKACHHSQI----------------MSEISDAGAVIVGSPTHN 315 (402)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHHHH-TTCEEEEEETTTSCHHHH----------------HHHHHTCSEEEEECCCBT
T ss_pred CcEEEEEECCChhHHHHHHHHHHHHHh-CCCeEEEEECCCCCHHHH----------------HHHHHHCCEEEEECCccC
Confidence 489999999999999999999999987 688999999987643322 346899999999999999
Q ss_pred CccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccCCC
Q 028841 83 GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGS 162 (203)
Q Consensus 83 ~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~~ 162 (203)
+++|+.+++|++++... .++||++++|+++++.++ ++..+.+.|...|+.+++..+. +.
T Consensus 316 ~~~~~~~~~~l~~l~~~----~l~~k~~~~f~t~g~~~~----a~~~l~~~l~~~G~~~~~~~~~----------~~--- 374 (402)
T 1e5d_A 316 NGILPYVAGTLQYIKGL----RPQNKIGGAFGSFGWSGE----STKVLAEWLTGMGFDMPATPVK----------VK--- 374 (402)
T ss_dssp TBCCHHHHHHHHHHHHT----CCCSCEEEEEEEESSSCH----HHHHHHHHHHHTTCBCCSCCEE----------EE---
T ss_pred CCchHHHHHHHHHhhhc----ccCCCEEEEEEcCCCccH----HHHHHHHHHHHCCCEEecCceE----------Ee---
Confidence 99999999999998532 579999999999876422 2556888898999998874432 12
Q ss_pred CCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 028841 163 PYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKKL 199 (203)
Q Consensus 163 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~ 199 (203)
..|++++++.+++++++|++.++..
T Consensus 375 ------------~~p~~~~~~~~~~~~~~l~~~l~~~ 399 (402)
T 1e5d_A 375 ------------NVPTHADYEQLKTMAQTIARALKAK 399 (402)
T ss_dssp ------------SSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------eCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 3789999999999999999988654
No 39
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=99.86 E-value=5.5e-22 Score=158.51 Aligned_cols=117 Identities=16% Similarity=0.154 Sum_probs=90.0
Q ss_pred CCceEEEEEcCCc--chHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCC-----C-----------------
Q 028841 1 MATKVYIVYYSMY--GHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAP-----P----------------- 56 (203)
Q Consensus 1 Mm~kilii~~S~~--g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~-----~----------------- 56 (203)
||+|||||++|+. |+|++|++.+.+.+++ .|.+|+++||.+.++..|+.+..|. +
T Consensus 1 ~MmkiLiI~gSpr~~s~t~~la~~~~~~l~~-~g~eV~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (273)
T 1d4a_A 1 VGRRALIVLAHSERTSFNYAMKEAAAAALKK-KGWEVVESDLYAMNFNPIISRKDITGKLKDPANFQYPAESVLAYKEGH 79 (273)
T ss_dssp CCCEEEEEECCSCTTSHHHHHHHHHHHHHHH-TTCEEEEEETTTTTCCCCCCGGGBCSCCSSTTSCCHHHHHHHHHHHTC
T ss_pred CCCEEEEEEeCCCCccHHHHHHHHHHHHHHh-CCCeEEEEEccccCCCCcCCHHHHHhhccCcccccchhhhhhhhhccc
Confidence 3459999999974 7999999999999988 7899999999988654443322221 0
Q ss_pred -CCCCCCCChhhhhhcCeeEEeccccCCccHHHHHHHHHHhccccc---------ccCCCCCceEEEEecCCC
Q 028841 57 -KSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWR---------TQQLAGKPAGMFYSTGSQ 119 (203)
Q Consensus 57 -~~d~~~~~~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~---------~~~l~gK~~~~~~t~g~~ 119 (203)
.+++. ...+++.+||+|||++|+||+++|+.||+||||+..... .+.++||++.+++|+|+.
T Consensus 80 ~~dd~~-~~~~~l~~AD~IV~~~P~y~~s~Pa~LK~~iDrv~~~g~~f~~~~~~~~g~l~gK~~~~i~t~Gg~ 151 (273)
T 1d4a_A 80 LSPDIV-AEQKKLEAADLVIFQFPLQWFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTGGS 151 (273)
T ss_dssp BCHHHH-HHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECSSC
T ss_pred CcHHHH-HHHHHHHhCCEEEEECchhhccCCHHHHHHHHHHHhcCcccccCCCCCccccCCCEEEEEEeCCCC
Confidence 11111 124579999999999999999999999999999864311 246899999999998775
No 40
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=99.86 E-value=3.7e-21 Score=145.89 Aligned_cols=134 Identities=16% Similarity=0.175 Sum_probs=99.3
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
|| |||||++|++.++.++++.+.+++++ .|.+++++||.+..++. .+|+. ...+++.+||.|||++|+
T Consensus 1 Mm-kiLiI~gsp~~~~s~l~~~l~~~~~~-~g~ev~~~dL~~~~~~~---------~~dv~-~~~~~l~~AD~iv~~~P~ 68 (192)
T 3f2v_A 1 MP-KTLIILAHPNISQSTVHKHWSDAVRQ-HTDRFTVHELYAVYPQG---------KIDVA-AEQKLIETHDSLVWQFPI 68 (192)
T ss_dssp -C-CEEEEECCTTGGGCSHHHHHHHHHTT-CTTTEEEEEHHHHCTTC---------CCCHH-HHHHHHHTSSSEEEEEEC
T ss_pred CC-EEEEEEeCCCccHHHHHHHHHHHHHh-CCCeEEEEEchhcCCCC---------chhHH-HHHHHHHhCCEEEEEcCh
Confidence 55 99999999987655789999999988 68899999998754320 11221 126789999999999999
Q ss_pred cCCccHHHHHHHHHHhccc-cc----ccCCCCCceEEEEecCCCC------C----ChHHHHHHHHHHHHHcCcEEecCC
Q 028841 81 RFGMMAAQFKAFLDATGGL-WR----TQQLAGKPAGMFYSTGSQG------G----GQETTALTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 81 y~~~~~~~~k~~ld~~~~~-~~----~~~l~gK~~~~~~t~g~~~------~----~~~~~~~~l~~~l~~~g~~~v~~~ 145 (203)
||+++|+.+|+||||+... |. .+.++||++.+++|+|++. + ..+..+..+...+..+||..++..
T Consensus 69 y~~~~pa~lK~~iDrv~~~g~~y~~~g~~l~gK~~~~~~t~G~~~~~y~~~g~~~~~~~~~l~pl~~~~~f~G~~~~~~~ 148 (192)
T 3f2v_A 69 YWFNCPPLLKQWLDEVLTYGWAYGSKGKALKGRKIALAVSLGAPAADYRADGAVGCSVAEVLRPFELTAKYCNADYRPPF 148 (192)
T ss_dssp BTTBCCHHHHHHHHHHSCBTTTBSSSCCSSTTCEEEEEEEESSCGGGSSTTSSSCSCHHHHHHHHHHHHHHTTCEECCCE
T ss_pred hhcCCCHHHHHHHHHHhhcCccccCCCCCCCCCEEEEEEeCCCChHhhccCCccccCHHHHHHHHHHHHHhCCCeEeeeE
Confidence 9999999999999998542 21 1468999999999988751 1 222223334566778899998765
Q ss_pred C
Q 028841 146 Y 146 (203)
Q Consensus 146 ~ 146 (203)
.
T Consensus 149 ~ 149 (192)
T 3f2v_A 149 T 149 (192)
T ss_dssp E
T ss_pred E
Confidence 3
No 41
>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1
Probab=99.86 E-value=7.2e-21 Score=143.00 Aligned_cols=163 Identities=20% Similarity=0.169 Sum_probs=116.6
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccC
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRF 82 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~ 82 (203)
+|++|+|+|++|||+++|+.|++.+.. +++++++++.+.+ .+++.++|.||||+|+|+
T Consensus 1 ~kilI~Y~S~tGnT~~iA~~ia~~l~~--~~~v~~~~~~~~~--------------------~~~l~~~d~iilg~pt~~ 58 (179)
T 1yob_A 1 AKIGLFFGSNTGKTRKVAKSIKKRFDD--ETMSDALNVNRVS--------------------AEDFAQYQFLILGTPTLG 58 (179)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHTTSCT--TTBCCCEEGGGCC--------------------HHHHHTCSEEEEEEECBT
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHhCC--CCceEEEEhhhCC--------------------HHHHhcCCEEEEEeccCC
Confidence 389999999999999999999999975 4567788876542 457889999999999999
Q ss_pred -CccH--------HHHHHHHHHhcccccccCCCCCceEEEEecCCC-CC-ChHHHHHHHHHHHHHcCcEEecCCCcCCCC
Q 028841 83 -GMMA--------AQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQ-GG-GQETTALTAITQLVHHGMIFVPIGYTFGAG 151 (203)
Q Consensus 83 -~~~~--------~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~-~~-~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~ 151 (203)
|.+| ..++.|++++... .++||++++|++++.. .+ ....++..+.+.|...|+.+++.....|.+
T Consensus 59 ~G~~pg~~~~~~~~~~~~fl~~l~~~----~l~gk~~a~fg~g~~~~y~~~~~~a~~~l~~~l~~~G~~~~~~~~~~g~~ 134 (179)
T 1yob_A 59 EGELPGLSSDAENESWEEFLPKIEGL----DFSGKTVALFGLGDQVGYPENYLDALGELYSFFKDRGAKIVGSWSTDGYE 134 (179)
T ss_dssp TTBCSSGGGTCSSCCHHHHHHHHTTC----CCTTCEEEEEEECCTTTCTTTTTHHHHHHHHHHHTTTCEEECCBCCTTCC
T ss_pred CCcCCcccccccchHHHHHHHHhhhc----ccCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEeeccCCCC
Confidence 8999 8999999998532 5899999999997653 22 223346678888888999999876555542
Q ss_pred ccccccccCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 028841 152 MFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGI 195 (203)
Q Consensus 152 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 195 (203)
......+..+.+.|. .. +. ..+++.+.++++.++++|.+.
T Consensus 135 ~~~s~~~~~~~f~gl-~~--d~-~~~~~~~~~~i~~w~~~l~~~ 174 (179)
T 1yob_A 135 FESSEAVVDGKFVGL-AL--DL-DNQSGKTDERVAAWLAQIAPE 174 (179)
T ss_dssp CSCCTTBSSSSBSSE-EE--CT-TTCGGGHHHHHHHHHHHHGGG
T ss_pred cccchhhhcCceecc-cc--CC-CCCCcccHHHHHHHHHHHHHH
Confidence 211111111111111 11 11 123456888999999888653
No 42
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=99.86 E-value=3.4e-21 Score=161.08 Aligned_cols=145 Identities=24% Similarity=0.317 Sum_probs=120.0
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccC
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRF 82 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~ 82 (203)
++++|+|+|++|||+++|+.+++++.+ .|.+++++++.+.+..++ .+++.++|+|||++|+|+
T Consensus 252 ~~i~i~y~S~~GnT~~lA~~ia~~l~~-~g~~v~~~~~~~~~~~~~----------------~~~~~~~d~ii~g~p~y~ 314 (398)
T 1ycg_A 252 AKAVIAYDTMWLSTEKMAHALMDGLVA-GGCEVKLFKLSVSDRNDV----------------IKEILDARAVLVGSPTIN 314 (398)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHHHH-TTCEEEEEEGGGSCHHHH----------------HHHHHHCSEEEEECCCBT
T ss_pred CeEEEEEECCccHHHHHHHHHHHHHHh-cCCeEEEEECCCCCHHHH----------------HHHHHHCCEEEEECCccC
Confidence 389999999999999999999999987 688999999976543322 346789999999999999
Q ss_pred CccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCC-CcCCCCccccccccCC
Q 028841 83 GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIG-YTFGAGMFEMEKVKGG 161 (203)
Q Consensus 83 ~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~-~~~~~~~~~~~~~~~~ 161 (203)
+++|+.+++|+|++... .++||++++|+++|+.+ .. ...+.+.|...|+.+++.+ +. +.
T Consensus 315 ~~~~~~~~~~l~~l~~~----~~~~k~~~~~~s~g~~~-~a---~~~l~~~l~~~g~~~~~~~~~~----------~~-- 374 (398)
T 1ycg_A 315 NDILPVVSPLLDDLVGL----RPKNKVGLAFGAYGWGG-GA---QKILEERLKAAKIELIAEPGPT----------VQ-- 374 (398)
T ss_dssp TBCCGGGHHHHHHHHHH----CCSSCEEEEEEEESSSC-CH---HHHHHHHHHHTTCEESCSSCCE----------EE--
T ss_pred ccchHHHHHHHHHHhcc----ccCCCEEEEEEeCCCch-HH---HHHHHHHHHHCCeEEecCceEE----------Ee--
Confidence 99999999999998632 57999999999998753 32 4457888999999998754 32 11
Q ss_pred CCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028841 162 SPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAK 197 (203)
Q Consensus 162 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~ 197 (203)
..|++++++.++++++++++.++
T Consensus 375 -------------~~p~~~~~~~~~~~~~~l~~~~~ 397 (398)
T 1ycg_A 375 -------------WVPRGEDLQRCYELGRKIAARIA 397 (398)
T ss_dssp -------------SSCCHHHHHHHHHHHHHHHHHHC
T ss_pred -------------cCCCHHHHHHHHHHHHHHHHHHh
Confidence 37889999999999999998763
No 43
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=99.86 E-value=2.2e-21 Score=149.58 Aligned_cols=144 Identities=22% Similarity=0.180 Sum_probs=100.5
Q ss_pred CCceEEEEEcCCc---chHHHHHHHHHHhcccC-CCceEEEEEcCCCCcHHH----hccCCCCCCCCC----------CC
Q 028841 1 MATKVYIVYYSMY---GHVEKLAEEIKKGASSV-EGVEAKLWQVPETLPEEV----LGKMSAPPKSDV----------PI 62 (203)
Q Consensus 1 Mm~kilii~~S~~---g~T~~la~~i~~~~~~~-~g~~v~~~~l~~~~~~~~----~~~~~~~~~~d~----------~~ 62 (203)
|| |||+|++|++ |+|.++++.+.+++++. .|.+++++||.+.+++.+ +.+..+.+.... ..
T Consensus 1 Mm-kiLii~gSpr~~~s~t~~l~~~~~~~~~~~~~g~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (212)
T 3r6w_A 1 MS-RILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLALSD 79 (212)
T ss_dssp CC-CEEEEECCSCSTTCHHHHHHHHHHHHHHHHCTTCCEEEEESSSSCCCCCCHHHHHHHTCSSGGGCCHHHHHHHHHHH
T ss_pred CC-EEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHHhhcCCcccCCHHHHHHHHHHH
Confidence 66 9999999964 57999999999999872 288999999988754221 111122011000 01
Q ss_pred CChhhhhhcCeeEEeccccCCccHHHHHHHHHHhccc-----cc--------ccCCCCCceEEEEecCCC--C-CCh---
Q 028841 63 ITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGL-----WR--------TQQLAGKPAGMFYSTGSQ--G-GGQ--- 123 (203)
Q Consensus 63 ~~~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~-----~~--------~~~l~gK~~~~~~t~g~~--~-~~~--- 123 (203)
...+++.+||+|||+||+||+++|+.+|+||||+... +. .+.++||++.+++|+|++ . ++.
T Consensus 80 ~~~~~l~~AD~iV~~~P~y~~~~pa~lK~~iD~~~~~g~~f~~~~~~g~~~~~~~l~gK~~~~i~t~g~~~~~~~~~~~~ 159 (212)
T 3r6w_A 80 QLVGELFDSDLLVISTPMYNFSVPSGLKAWIDQIVRLGVTFDFVLDNGVAQYRPLLRGKRALIVTSRGGHGFGPGGENQA 159 (212)
T ss_dssp HHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEEEECC-CEEEEECCCSCEEEEEEECSSSCCSTTCTTGG
T ss_pred HHHHHHHhCCEEEEEcCcccccCCHHHHHHHHHHhhCCceeecccCCCCccccccCCCCEEEEEEecCCCCcCCCCCCCc
Confidence 1256899999999999999999999999999998532 11 336899999999998742 1 111
Q ss_pred -HHHHHHHHHHHHHcCcEEecCC
Q 028841 124 -ETTALTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 124 -~~~~~~l~~~l~~~g~~~v~~~ 145 (203)
.....++...|...|+..++..
T Consensus 160 ~~~~~~~l~~~l~~~G~~~~~~v 182 (212)
T 3r6w_A 160 MNHADPWLRTALGFIGIDEVTVV 182 (212)
T ss_dssp GCCSHHHHHHHHHHHTCCEEEEE
T ss_pred hhhhHHHHHHHHHHCCCceeEEE
Confidence 1113446677778899888643
No 44
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=99.85 E-value=3.4e-21 Score=161.83 Aligned_cols=141 Identities=20% Similarity=0.248 Sum_probs=113.9
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCC---cHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecc
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETL---PEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFP 79 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~---~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP 79 (203)
++|+|+|+|++|||++||+.|++++.+ .|+++.++++.+.. +.++ .+++.+||+||||||
T Consensus 266 ~~v~I~Y~S~yGnTe~mA~~ia~gl~~-~Gv~~~~~~~~d~~~~~~s~i----------------~~~i~~~~~ivlGsp 328 (410)
T 4dik_A 266 GKVTVIYDSMYGFVENVMKKAIDSLKE-KGFTPVVYKFSDEERPAISEI----------------LKDIPDSEALIFGVS 328 (410)
T ss_dssp TEEEEEEECSSSHHHHHHHHHHHHHHH-TTCEEEEEEECSSCCCCHHHH----------------HHHSTTCSEEEEEEC
T ss_pred cceeeEEecccChHHHHHHHHHHHHHh-cCCceEEEEeccCCCCCHHHH----------------HHHHHhCCeEEEEeC
Confidence 479999999999999999999999999 79998887776543 2222 357889999999999
Q ss_pred ccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCcccccccc
Q 028841 80 TRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVK 159 (203)
Q Consensus 80 ~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~ 159 (203)
+|+++++++|..|++.+... .++||++++|+++||.+++.+ .+.+.|...|+.+++.... +
T Consensus 329 T~~~~~~p~~~~~l~~l~~~----~~~~K~~~~FGSyGWsg~a~~----~~~~~l~~~~~~~v~~~~~-----------~ 389 (410)
T 4dik_A 329 TYEAEIHPLMRFTLLEIIDK----ANYEKPVLVFGVHGWAPSAER----TAGELLKETKFRILSFTEI-----------K 389 (410)
T ss_dssp CTTSSSCHHHHHHHHHHHHH----CCCCCEEEEEEECCCCCTTSC----CHHHHHTTSSCEEEEEEEE-----------C
T ss_pred CcCCcCCHHHHHHHHHHHhc----ccCCCEEEEEECCCCCcHHHH----HHHHHHHHCCCEEECcEEE-----------E
Confidence 99999999999999988643 578999999999999877654 3677888899999875422 1
Q ss_pred CCCCCccceecCCCCCCCCHHHHHHHHHHHHHHH
Q 028841 160 GGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIA 193 (203)
Q Consensus 160 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~ 193 (203)
+ ..++++++++|.+++++.+
T Consensus 390 ~--------------~~~de~~lee~~~~~~~~l 409 (410)
T 4dik_A 390 G--------------SNMDERKIEEAISLLKKEL 409 (410)
T ss_dssp S--------------TTCCHHHHHHHHHHHHHHH
T ss_pred C--------------CCCCHHHHHHHHHHHHHhh
Confidence 1 2678888888888877643
No 45
>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1
Probab=99.84 E-value=2.6e-20 Score=139.21 Aligned_cols=162 Identities=16% Similarity=0.140 Sum_probs=113.5
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCC-CcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPET-LPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRF 82 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~-~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~ 82 (203)
|++|+|+|++|||+++|+.|++.+.+ . +++++++.+. + ..++.++|.||||+|+|+
T Consensus 1 ki~I~Y~S~tGnT~~vA~~ia~~l~~-~--~~~~~~~~~~~~--------------------~~~l~~~d~ii~g~pt~~ 57 (173)
T 2fcr_A 1 KIGIFFSTSTGNTTEVADFIGKTLGA-K--ADAPIDVDDVTD--------------------PQALKDYDLLFLGAPTWN 57 (173)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHGG-G--BCCCEEGGGCSC--------------------GGGGGGCSEEEEEEECCS
T ss_pred CEEEEEECCCchHHHHHHHHHHHhcc-C--CcEEEehhhcCC--------------------hhHHccCCEEEEEEeecC
Confidence 68999999999999999999999976 2 5677777653 2 346889999999999999
Q ss_pred -Ccc----HHHHHHHH-HHhcccccccCCCCCceEEEEecCCCCC--ChHHHHHHHHHHHHHcCcEEecCCCcCCCCccc
Q 028841 83 -GMM----AAQFKAFL-DATGGLWRTQQLAGKPAGMFYSTGSQGG--GQETTALTAITQLVHHGMIFVPIGYTFGAGMFE 154 (203)
Q Consensus 83 -~~~----~~~~k~~l-d~~~~~~~~~~l~gK~~~~~~t~g~~~~--~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~ 154 (203)
|.+ |..++.|+ +++.. ..++||++++|++++..+. ....++..+.+.|...|+.+++....+|++...
T Consensus 58 ~G~~~~~~p~~~~~fl~~~l~~----~~l~gk~~avfg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~~~~~~~~g~~~~~ 133 (173)
T 2fcr_A 58 TGADTERSGTSWDEFLYDKLPE----VDMKDLPVAIFGLGDAEGYPDNFCDAIEEIHDCFAKQGAKPVGFSNPDDYDYEE 133 (173)
T ss_dssp TTCSSCCSCSTHHHHHHHTGGG----CCCTTCEEEEEEEECTTTCTTSTTTHHHHHHHHHHHTTCEEECCBCGGGSCCSC
T ss_pred CCCcCccCcHHHHHHHHhhccc----cccCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEEEeecccCCccccc
Confidence 899 99999999 98753 2689999999999765421 122235668888888999999875555543221
Q ss_pred cccccCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 028841 155 MEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIA 196 (203)
Q Consensus 155 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~ 196 (203)
+..+.++.+.|. +..+ ..+++.+.+++++++++|.+.+
T Consensus 134 s~~~~~~~~~~l-~~~~---~~~~~~~~~~i~~w~~~i~~~~ 171 (173)
T 2fcr_A 134 SKSVRDGKFLGL-PLDM---VNDQIPMEKRVAGWVEAVVSET 171 (173)
T ss_dssp CTTEETTEESSE-EEET---TTCSSCHHHHHHHHHHHHHHHH
T ss_pred chhhhCCeeeee-eecC---CCCccccHHHHHHHHHHHHHHh
Confidence 111111111111 1111 1223467888899998887653
No 46
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Probab=99.84 E-value=9.4e-21 Score=147.06 Aligned_cols=172 Identities=12% Similarity=0.059 Sum_probs=115.8
Q ss_pred CceEEEEEcCCc-----chHHHHHHHHHHhcccC-CCc-eEEEEEcCCCCcHH----HhccCC-----CCCCC------C
Q 028841 2 ATKVYIVYYSMY-----GHVEKLAEEIKKGASSV-EGV-EAKLWQVPETLPEE----VLGKMS-----APPKS------D 59 (203)
Q Consensus 2 m~kilii~~S~~-----g~T~~la~~i~~~~~~~-~g~-~v~~~~l~~~~~~~----~~~~~~-----~~~~~------d 59 (203)
|+|||+|++|+. ++|.+|++.+.+++++. .|. +++++||.+.+++. ++.+.. +...+ |
T Consensus 4 MmkIL~I~gSpr~~~~~S~s~~L~~~~~~~l~~~~~~~~ev~~idL~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~d 83 (223)
T 3u7i_A 4 MNKTLIINAHPKVDDTSSVSIKVFKHFLESYKELISNNETIEQINLYDDVVPMIDKTVLSAWEKQGNGQELTREEQKVTE 83 (223)
T ss_dssp CCEEEEEECCTTTTCTTSHHHHHHHHHHHHHHHHCCSSCEEEEEETTTSCCCCCCHHHHHHHHHHTTTCCCCHHHHHHHH
T ss_pred cCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhCCCCCeEEEEECcCCCCCCCCHHHHHHhhccccccccCHHHHHHHH
Confidence 349999999964 78999999999999863 367 99999998865422 211111 11010 0
Q ss_pred CCCCChhhhhhcCeeEEeccccCCccHHHHHHHHHHhccc---cc------ccCC-CCCceEEEEecCCCCCC--h----
Q 028841 60 VPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGL---WR------TQQL-AGKPAGMFYSTGSQGGG--Q---- 123 (203)
Q Consensus 60 ~~~~~~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~---~~------~~~l-~gK~~~~~~t~g~~~~~--~---- 123 (203)
......+++.+||+|||++|+||+++|+.+|+||||+.+. |. .+.+ +||++.+++|+|+..++ .
T Consensus 84 ~~~~l~~~~~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~g~~f~~~~~g~~~~l~~gK~~~~i~t~gg~~~~~~~~~~~ 163 (223)
T 3u7i_A 84 RMSEILQQFKSANTYVIVLPLHNFNIPSKLKDYMDNIMIARETFKYTETGSVGLLKDGRRMLVIQASGGIYTNDDWYTDV 163 (223)
T ss_dssp HHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEECSSCEEESCCSSCEEEEEEECSSCCSSSSHHHHT
T ss_pred HHHHHHHHHHhCCEEEEEcChhhccCCHHHHHHHHHHhhcCCceecCCCCCcccccCCCEEEEEEeCCCCCCCCCccchH
Confidence 0011367899999999999999999999999999998653 11 1346 89999999998875432 1
Q ss_pred HHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 028841 124 ETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIA 196 (203)
Q Consensus 124 ~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~ 196 (203)
.....++...|...|+..+......|. . ..+.++-++++++-++++++..
T Consensus 164 ~~~~~~l~~~l~~~G~~~~~~i~~~g~----------------------~-~~~~~~~~~~a~~~~~~~~~~f 213 (223)
T 3u7i_A 164 EYSHKYLKAMFNFLGIEDYQIVRAQGT----------------------A-VLDPTEVLQNAYKEVEEAASRL 213 (223)
T ss_dssp CHHHHHHHHHHHHHTCCEEEEEEECCT----------------------T-TSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCceeEEEEEcCc----------------------c-CCCHHHHHHHHHHHHHHHHHHH
Confidence 122345667777789888764322111 0 1235666777777777766544
No 47
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=99.83 E-value=2.4e-19 Score=137.43 Aligned_cols=127 Identities=14% Similarity=0.082 Sum_probs=96.5
Q ss_pred ceEEEEEcCCc------chHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEE
Q 028841 3 TKVYIVYYSMY------GHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVF 76 (203)
Q Consensus 3 ~kilii~~S~~------g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iii 76 (203)
.|||||++|+. ++|++|++.+++++++ .|.+++++||.+.. |+ ....+++.+||+|||
T Consensus 13 ~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~-~g~~v~~~dL~~~~--------------d~-~~~~~~l~~AD~iV~ 76 (204)
T 2amj_A 13 SNILIINGAKKFAHSNGQLNDTLTEVADGTLRD-LGHDVRIVRADSDY--------------DV-KAEVQNFLWADVVIW 76 (204)
T ss_dssp CEEEEEECCC------CHHHHHHHHHHHHHHHH-TTCEEEEEESSSCC--------------CH-HHHHHHHHHCSEEEE
T ss_pred cCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHH-cCCEEEEEeCCccc--------------cH-HHHHHHHHhCCEEEE
Confidence 58999999987 8999999999999998 68999999998631 11 012578999999999
Q ss_pred eccccCCccHHHHHHHHHHhccc-cc-------------------ccCCCCCceEEEEecCCCCC------------ChH
Q 028841 77 GFPTRFGMMAAQFKAFLDATGGL-WR-------------------TQQLAGKPAGMFYSTGSQGG------------GQE 124 (203)
Q Consensus 77 gsP~y~~~~~~~~k~~ld~~~~~-~~-------------------~~~l~gK~~~~~~t~g~~~~------------~~~ 124 (203)
+||+||+++|+.||+||||+... |. .+.++||++++++|+|++.. ...
T Consensus 77 ~~P~y~~s~pa~LK~~iDrv~~~g~~~~y~~~~~~~~~~~~~~g~~~~l~gK~~~~i~t~g~~~~~y~~~g~~~~~~~~~ 156 (204)
T 2amj_A 77 QMPGWWMGAPWTVKKYIDDVFTEGHGTLYASDGRTRKDPSKKYGSGGLVQGKKYMLSLTWNAPMEAFTEKDQFFHGVGVD 156 (204)
T ss_dssp EEECBTTBCCHHHHHHHHHHHHHTBTTTBSSSCC-------CTTCCBSCTTCEEEEEEECSSCTHHHHCTTSSSCSCCHH
T ss_pred ECCccccCCCHHHHHHHHHHhhcCcceeeccCcccccccccccCcccccCCCeEEEEEeCCCChHHHccCcccccCCCHH
Confidence 99999999999999999986422 21 13579999999999876421 112
Q ss_pred HHHHHHHHHHHHcCcEEecCC
Q 028841 125 TTALTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 125 ~~~~~l~~~l~~~g~~~v~~~ 145 (203)
..+..+...+..+|+.+++..
T Consensus 157 ~~l~~l~~~l~~~G~~~~~~~ 177 (204)
T 2amj_A 157 GVYLPFHKANQFLGMEPLPTF 177 (204)
T ss_dssp HHTHHHHHHHHHTTCEECCCE
T ss_pred HHHHHHHHHHHHcCCeecceE
Confidence 222235567778899988654
No 48
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=99.83 E-value=3.8e-21 Score=139.98 Aligned_cols=141 Identities=14% Similarity=0.106 Sum_probs=106.6
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
|| |++|+|+|++|||+++|+.|++.+.+ .|+++++++..+ .+++.++|.|||++|+
T Consensus 1 M~-ki~I~Y~S~tGnT~~~A~~ia~~l~~-~g~~v~~~~~~~----------------------~~~l~~~d~vi~g~pt 56 (147)
T 2hna_A 1 MA-DITLISGSTLGGAEYVAEHLAEKLEE-AGFTTETLHGPL----------------------LEDLPASGIWLVISST 56 (147)
T ss_dssp CC-SEEEECCTTSCCCHHHHHHHHHHHHH-TTCCEEEECCTT----------------------SCSSCSEEEEEEECCT
T ss_pred CC-eEEEEEECCchHHHHHHHHHHHHHHH-CCCceEEecCCC----------------------HHHcccCCeEEEEECc
Confidence 55 99999999999999999999999988 688888776432 1256789999999999
Q ss_pred c-CCccHHHHHHHHHHhcccccccCCCCCceEEEEec----CCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCcccc
Q 028841 81 R-FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST----GSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEM 155 (203)
Q Consensus 81 y-~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~----g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~ 155 (203)
| +|.+|+.++.|++++... ...+++|++++|+++ ++.+... ..+.+.|...|+.+++....+
T Consensus 57 ~g~g~~p~~~~~f~~~l~~~--~~~l~~~~~avfg~G~~~y~~~~~a~----~~l~~~l~~~G~~~~~~~~~~------- 123 (147)
T 2hna_A 57 HGAGDIPDNLSPFYEALQEQ--KPDLSAVRFGAIGIGSREYDTFCGAI----DKLEAELKNSGAKQTGETLKI------- 123 (147)
T ss_dssp TTTCCTTSSCHHHHHHHHHH--CCCTTEEEEEEESCCHHHHSCSSSCT----THHHHHHHHHTCEECSSCBCC-------
T ss_pred cCCCCCChhHHHHHHHHHhh--ccccCCCEEEEEecccCCHHHHHHHH----HHHHHHHHHcCCeEeeeeEEE-------
Confidence 9 899999999999998521 114789999999853 3333332 236778888899988765331
Q ss_pred ccccCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 028841 156 EKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIA 196 (203)
Q Consensus 156 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~ 196 (203)
. ..|++++.+.++++++++++.+
T Consensus 124 ---d---------------~~~~~~~~~~~~~w~~~~~~~l 146 (147)
T 2hna_A 124 ---N---------------ILDHDIPEDPAEEWLGSWVNLL 146 (147)
T ss_dssp ---C---------------CSSCCSSCSCCHHHHHHHHHHH
T ss_pred ---e---------------cCCCCCcHHHHHHHHHHHHHHh
Confidence 1 2444566777888888887654
No 49
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=99.82 E-value=3.8e-20 Score=144.10 Aligned_cols=114 Identities=23% Similarity=0.200 Sum_probs=87.7
Q ss_pred eEEEEEcCC--cchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCC---C--------------------CCCC
Q 028841 4 KVYIVYYSM--YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMS---A--------------------PPKS 58 (203)
Q Consensus 4 kilii~~S~--~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~---~--------------------~~~~ 58 (203)
|||||++|+ .++|.+|++.+.+++++ .|.+|+++||.+.++..++.+.. | ...+
T Consensus 3 kiLiI~gspr~~S~t~~l~~~~~~~l~~-~g~ev~~~dL~~~~~~P~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d 81 (228)
T 3tem_A 3 KVLIVYAHQEPKSFNGSLKNVAVDELSR-QGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLAS 81 (228)
T ss_dssp EEEEEECCSCTTSHHHHHHHHHHHHHHH-HTCEEEEEETTTTTCCCCCCGGGBCSCCSCTTSCCHHHHHHHHHHHTCBCH
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHHH-CCCEEEEEEhhhcCCcccCCHHHHhhhccccccccchhhhhhhhhcCCCcH
Confidence 999999996 47899999999999988 69999999999876433332210 1 1111
Q ss_pred CCCCCChhhhhhcCeeEEeccccCCccHHHHHHHHHHhcccc---------cccCCCCCceEEEEecCCC
Q 028841 59 DVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLW---------RTQQLAGKPAGMFYSTGSQ 119 (203)
Q Consensus 59 d~~~~~~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~---------~~~~l~gK~~~~~~t~g~~ 119 (203)
|+. ...+++.+||+|||++|+||+++|+.+|+|||++.... ..+.++||++.+++|+|+.
T Consensus 82 d~~-~~~~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~~~T~g~~ 150 (228)
T 3tem_A 82 DIT-DEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGT 150 (228)
T ss_dssp HHH-HHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECSSC
T ss_pred HHH-HHHHHHHhCCEEEEECChhhcccCHHHHHHHHHHhhcCcccccCCCCCCCCCCCCEEEEEEeCCCC
Confidence 221 12567999999999999999999999999999985321 1246899999999998764
No 50
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=99.82 E-value=1.1e-19 Score=134.65 Aligned_cols=156 Identities=20% Similarity=0.219 Sum_probs=104.1
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
|| |++|+|+|++|||+++|+.|++.+ |. ++++++.+.+ ...+.++|.||||+|+
T Consensus 1 M~-k~~I~Y~S~tGnT~~~A~~ia~~l----g~-~~~~~~~~~~--------------------~~~l~~~d~ii~g~pt 54 (164)
T 2bmv_A 1 MG-KIGIFFGTDSGNAEAIAEKISKAI----GN-AEVVDVAKAS--------------------KEQFNSFTKVILVAPT 54 (164)
T ss_dssp -C-CEEEEECCSSSHHHHHHHHHHHHH----CS-EEEEEGGGCC--------------------HHHHTTCSEEEEEEEE
T ss_pred CC-eEEEEEECCCchHHHHHHHHHHHc----CC-cEEEecccCC--------------------HhHHhhCCEEEEEECC
Confidence 55 999999999999999999999998 34 7888887643 3468899999999999
Q ss_pred cC-CccHHHHHHHHHHhcccccccCCCCCceEEEEecCCC-CC-ChHHHHHHHHHHHHHcCcEEecCCCcCCCCcccccc
Q 028841 81 RF-GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQ-GG-GQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEK 157 (203)
Q Consensus 81 y~-~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~-~~-~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~ 157 (203)
|+ |.+|..++.|++++... .+++|++++|++++.. .+ ....+...+.+.|.. +.+++...+.|+.......
T Consensus 55 ~~~g~~p~~~~~f~~~l~~~----~l~~k~~avf~~G~~~~y~~~~~~a~~~l~~~l~~--~~~~~~~~~~g~~~~~s~~ 128 (164)
T 2bmv_A 55 AGAGDLQTDWEDFLGTLEAS----DFANKTIGLVGLGDQDTYSETFAEGIFHIYEKAKA--GKVVGQTSTDGYHFEASKA 128 (164)
T ss_dssp ETTTEECHHHHHHHTTCCTH----HHHTSEEEEEEECCTTTCTTSTTTHHHHHHHHHTT--SEECCCEESTTCCCSCCTT
T ss_pred cCCCcCcHHHHHHHHHHhhh----hcCCCEEEEEEeCCcchhhHHHhHHHHHHHHHHhh--CEEEccccCCCccccchhh
Confidence 97 77888899999987532 4789999999995431 21 111224456666665 7777653233332111111
Q ss_pred ccCCCCCccceecC--CCCCCCCHHHHHHHHHHHHHHHH
Q 028841 158 VKGGSPYGAGTFAG--DGSRQPTELELEQAFHQGKHIAG 194 (203)
Q Consensus 158 ~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~g~~l~~ 194 (203)
+.. +.+.+ .....+++++.+++++++++|.+
T Consensus 129 ~~~------~~~~~l~~~~~~~~~~~~~~~~~w~~~l~~ 161 (164)
T 2bmv_A 129 VEG------GKFVGLVIDEDNQDDLTDERISKWVEQVKG 161 (164)
T ss_dssp EET------TEESSEEECTTTCGGGHHHHHHHHHHHHTT
T ss_pred hhc------CcccCccCCCCCccccCHHHHHHHHHHHHH
Confidence 110 01111 11113345789999999998864
No 51
>3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm}
Probab=99.81 E-value=1.2e-20 Score=138.11 Aligned_cols=128 Identities=27% Similarity=0.315 Sum_probs=81.4
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCC-CCc---HHHhccCCCC-CCC-CCCCC--ChhhhhhcC
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE-TLP---EEVLGKMSAP-PKS-DVPII--TPNELAEAD 72 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~-~~~---~~~~~~~~~~-~~~-d~~~~--~~~~l~~aD 72 (203)
||+|++|+|+|++|||+++|+.|++++.. .++.-+++.+ ..+ ..+....... ..+ ..|+. ...++.+||
T Consensus 2 M~~kilIvY~S~tGnT~~iA~~Ia~~l~~---~~~~~i~~~~~~~~~~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~~~d 78 (151)
T 3edo_A 2 MAKKTLILYYSWSGETKKMAEKINSEIKD---SELKEVKVSEGTFDADXYKTSDIALDQIQGNKDFPEIQLDNIDYNNYD 78 (151)
T ss_dssp CCCCEEEEECCSSSHHHHHHHHHHHHSTT---CEEEECBCCTTSSCSSHHHHHHHHHHHHTTSSCCCCCBCCCCCGGGCS
T ss_pred CCCcEEEEEECCCCcHHHHHHHHHHhccC---CCEEEEEcCCCCCCchhhhhhHHHHHHHhcccCCcccchhhhCHhhCC
Confidence 88899999999999999999999999854 2332223211 111 1111000000 000 11111 134789999
Q ss_pred eeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEe
Q 028841 73 GFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFV 142 (203)
Q Consensus 73 ~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v 142 (203)
.||||+|+|++.+|+.++.|++++. .+.+|++++|+++|+..++. ...+.+.+. +..+.
T Consensus 79 ~iilG~P~~~g~~~~~~~~fl~~~~------~~~~k~~~~~t~gg~~~g~~---~~~l~~~~~--~~~~~ 137 (151)
T 3edo_A 79 LILIGSPVWSGYPATPIKTLLDQMK------NYRGEVASFFTSAGTNHKAY---VSHFNEWAD--GLNVI 137 (151)
T ss_dssp EEEEEEEEETTEECTHHHHHHHHTT------TCCSEEEEEEECSSCCHHHH---HHHHHHHTT--TSEEE
T ss_pred EEEEEcceecccccHHHHHHHHhch------hcCCEEEEEEEeCCCCCCcH---HHHHHHHcC--CCeee
Confidence 9999999999999999999999974 46778888887777643332 333555543 44454
No 52
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=99.81 E-value=5.4e-19 Score=136.19 Aligned_cols=129 Identities=15% Similarity=0.065 Sum_probs=96.9
Q ss_pred CceEEEEEcCCc------chHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeE
Q 028841 2 ATKVYIVYYSMY------GHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFV 75 (203)
Q Consensus 2 m~kilii~~S~~------g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ii 75 (203)
|+|||||++|+. ++|+.+++.+++.+++ .|.+++++++.+.. |+ ....+++.+||.||
T Consensus 25 M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~-~g~ev~~~dL~~~~--------------Dv-~~~~~~l~~aD~iv 88 (218)
T 3rpe_A 25 MSNVLIINAMKEFAHSKGALNLTLTNVAADFLRE-SGHQVKITTVDQGY--------------DI-ESEIENYLWADTII 88 (218)
T ss_dssp CCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHH-TTCCEEEEEGGGCC--------------CH-HHHHHHHHHCSEEE
T ss_pred CcceEEEEeCCCcccCCChHHHHHHHHHHHHHhh-CCCEEEEEECCCcc--------------CH-HHHHHHHHhCCEEE
Confidence 459999999973 5799999999999988 79999999997521 11 01257899999999
Q ss_pred EeccccCCccHHHHHHHHHHhccc-cc-------------------ccCCCCCceEEEEecCCCC-----C-----Ch--
Q 028841 76 FGFPTRFGMMAAQFKAFLDATGGL-WR-------------------TQQLAGKPAGMFYSTGSQG-----G-----GQ-- 123 (203)
Q Consensus 76 igsP~y~~~~~~~~k~~ld~~~~~-~~-------------------~~~l~gK~~~~~~t~g~~~-----~-----~~-- 123 (203)
|++|+||+++|+.+|+|+|++... |. .+.++||++.+++|+|++. + +.
T Consensus 89 ~~~P~y~~~~p~~lK~~iD~v~~~g~af~y~~~g~~~~~p~~~yG~~glL~gKk~~li~T~G~p~~~y~~~g~~~~g~~~ 168 (218)
T 3rpe_A 89 YQMPAWWMGEPWILKKYIDEVFTDGHGRLYQSDGRTRSDATKGYGSGGLIQGKTYMLSVTWNAPREAFTDPEQFFHGVGV 168 (218)
T ss_dssp EEEECBTTBCCHHHHHHHHHHHHHTBTTTBCCCSCCSTTTTSCTTCCBSCTTCEEEEEEECSSCTHHHHCTTSTTTTCHH
T ss_pred EECChHhccCCHHHHHHHHHHHhcCcceeeccccccccccccccCCccCCCCCEEEEEEcCCCChHhhcccccccccCCH
Confidence 999999999999999999998432 21 1357999999999988752 1 11
Q ss_pred HHHHHHHHHHHHHcCcEEecCCC
Q 028841 124 ETTALTAITQLVHHGMIFVPIGY 146 (203)
Q Consensus 124 ~~~~~~l~~~l~~~g~~~v~~~~ 146 (203)
+..+..+...+..+||..++...
T Consensus 169 ~~~l~p~~~~l~f~G~~~l~~~~ 191 (218)
T 3rpe_A 169 DGVYLPFHKANQFLGMKPLPTFM 191 (218)
T ss_dssp HHHTHHHHHHHHHTTCEECCCEE
T ss_pred HHHHHHHHHHHHhCCCEEeceEE
Confidence 11122245566778999987543
No 53
>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343}
Probab=99.81 E-value=1.9e-19 Score=133.20 Aligned_cols=124 Identities=19% Similarity=0.326 Sum_probs=84.2
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCC--CcHHHhccCCCC------CCC--CCCCC--Chhhhh
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPET--LPEEVLGKMSAP------PKS--DVPII--TPNELA 69 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~--~~~~~~~~~~~~------~~~--d~~~~--~~~~l~ 69 (203)
|+|++|||+|++|||+++|+.|++.+.. + ++++... .+...+.-+.+. ..+ ..|+. ...++.
T Consensus 4 ~~kilIvY~S~tG~T~~vA~~Ia~~l~~----~--~~~i~~~~~y~~~~l~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~ 77 (162)
T 3klb_A 4 DRKILVAYFSCSGVTKAVAEKLAAITGA----D--LYEIKPEVPYTEADLDWNDKKSRSSVEMRDALSRPAISGTLFHPE 77 (162)
T ss_dssp GSCEEEEECCSSSHHHHHHHHHHHHHTC----E--EEECCBSSCCCTGGGCTTCTTSHHHHHHTCTTCCCCBSCCCSCGG
T ss_pred CCCEEEEEECCCchHHHHHHHHHHHhCC----C--eEEEEeCCcCCccccchhhHHHHHHHHHhccccCccccccccChh
Confidence 5799999999999999999999999853 3 3333221 111000000000 000 11211 134789
Q ss_pred hcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEe
Q 028841 70 EADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFV 142 (203)
Q Consensus 70 ~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v 142 (203)
+||.||||+|+|++.+|+.++.||+++ .++||++++|+|+|+.+.+ .++.++.+.+. +..++
T Consensus 78 ~yd~iilG~P~~~g~~~~~~~~fl~~~-------~l~gk~v~~f~t~g~~~~g--~~~~~l~~~l~--~~~~~ 139 (162)
T 3klb_A 78 KYEVLFVGFPVWWYIAPTIINTFLESY-------DFAGKIVVPFATSGGSGIG--NCEKNLHKAYP--DIVWK 139 (162)
T ss_dssp GCSEEEEEEECBTTBCCHHHHHHHHTS-------CCTTCEEEEEEECSSCCSH--HHHHHHHHHCT--TSEEC
T ss_pred hCCEEEEEcccccCCCCHHHHHHHHhc-------CCCCCEEEEEEEeCCCCcc--HHHHHHHHHcC--CCEee
Confidence 999999999999999999999999987 4899999999999886433 23455556554 56665
No 54
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=99.79 E-value=9.4e-19 Score=130.52 Aligned_cols=124 Identities=17% Similarity=0.321 Sum_probs=83.5
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCC--cHHHhccCC-CC-------CCCCCCCC--Chhhhh
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETL--PEEVLGKMS-AP-------PKSDVPII--TPNELA 69 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~--~~~~~~~~~-~~-------~~~d~~~~--~~~~l~ 69 (203)
|+|++|||+|.+|||+++|+.|++.+.. +++++.... +...+.-+. +. .....|++ ...++.
T Consensus 13 ~mkilIvY~S~tGnT~~vA~~Ia~~l~~------d~~~I~~~~~y~~~~~~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~ 86 (171)
T 4ici_A 13 NSKILVAYFSATGTTARAAEKLGAAVGG------DLYPIAPAQPYTSADLDWNNKRSRSSVEMNDPKMRPAIKSKKENIG 86 (171)
T ss_dssp CCCEEEEECCSSSHHHHHHHHHHHHHTC------EEEECCBSSCCCTGGGCTTCTTSHHHHHHHCTTCCCCBSCCCTTGG
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHhCC------CeEEEeeCCCCCccccchhhHhHHHHHHHhcccCCcccccccccHh
Confidence 3499999999999999999999999853 234443321 110000000 00 00011111 134789
Q ss_pred hcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEe
Q 028841 70 EADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFV 142 (203)
Q Consensus 70 ~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v 142 (203)
+||.||||+|+|++.+|+.++.||+++ .++||++++|+|+|+.+.+ .++..+.+.+. +..+.
T Consensus 87 ~yD~iilg~Pvy~g~~~~~~~~fl~~~-------~l~gk~v~~f~t~g~~~~g--~a~~~l~~~l~--~~~~~ 148 (171)
T 4ici_A 87 TYDVVFIGYPIWWDLAPRIINTFIEGH-------SLKGKTVVPFATSGGSSIG--NSATVLKKTYP--DLNWK 148 (171)
T ss_dssp GCSEEEEEEECBTTBCCHHHHHHHHHS-------CCTTSEEEEEEECSSCCSH--HHHHHHHHHST--TSEEC
T ss_pred HCCEEEEecccccCCchHHHHHHHHHc-------CCCcCEEEEEEecCCCCcc--hHHHHHHHHcC--CCeec
Confidence 999999999999999999999999998 4899999999999876433 23555666554 45553
No 55
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=99.78 E-value=3.6e-19 Score=134.92 Aligned_cols=144 Identities=14% Similarity=0.099 Sum_probs=108.8
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccC
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRF 82 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~ 82 (203)
+|++|+|+|++|||+++|+.|++.+.+ .|++++++++.+. .+.+.++|.|||++|+|+
T Consensus 22 ~kv~IvY~S~tGnTe~~A~~ia~~l~~-~g~~v~v~~l~~~---------------------~~~l~~~d~vi~g~~Ty~ 79 (191)
T 1bvy_F 22 TPLLVLYGSNMGTAEGTARDLADIAMS-KGFAPQVATLDSH---------------------AGNLPREGAVLIVTASYN 79 (191)
T ss_dssp CCEEEEEECSSSHHHHHHHHHHHHHHT-TTCCCEEEEGGGS---------------------TTCCCSSSEEEEEECCBT
T ss_pred CeEEEEEECCChHHHHHHHHHHHHHHh-CCCceEEeeHHHh---------------------hhhhhhCCeEEEEEeecC
Confidence 489999999999999999999999988 6889999998763 124678999999999999
Q ss_pred CccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCC-ChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccCC
Q 028841 83 GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGG-GQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGG 161 (203)
Q Consensus 83 ~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~-~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~ 161 (203)
|.+|..++.|++++... ....++||++++|+++....+ ....+...+.+.|...|+.++..... +.
T Consensus 80 G~~p~~~~~fl~~L~~~-~~~~l~~~~~avfG~Gds~y~~~f~~a~~~l~~~L~~~Ga~~v~~~~~----------~d-- 146 (191)
T 1bvy_F 80 GHPPDNAKQFVDWLDQA-SADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIADRGE----------AD-- 146 (191)
T ss_dssp TBCCTTTHHHHHHHHTC-CSSCCTTCCEEEEEEECTTSGGGTTHHHHHHHHHHHTTTCCCCEEEEE----------EE--
T ss_pred CCcCHHHHHHHHHHHhc-cchhhCCCEEEEEEccCCchhhhHhHHHHHHHHHHHHCCCeEeeccEE----------Ee--
Confidence 99999999999998532 112488999999997643332 11123456778888888777653211 10
Q ss_pred CCCccceecCCCCCCCCHHHHHH-HHHHHHHHHHHHH
Q 028841 162 SPYGAGTFAGDGSRQPTELELEQ-AFHQGKHIAGIAK 197 (203)
Q Consensus 162 ~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~l~~~~~ 197 (203)
. ++|++. +++|++.|.+.+.
T Consensus 147 --------------~--~~d~e~~~~~w~~~l~~~l~ 167 (191)
T 1bvy_F 147 --------------A--SDDFEGTYEEWREHMWSDVA 167 (191)
T ss_dssp --------------T--TSCHHHHHHHHHHHHHHHHH
T ss_pred --------------c--CCChHHHHHHHHHHHHHHhc
Confidence 1 245665 9999999888775
No 56
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=99.78 E-value=7.2e-19 Score=140.28 Aligned_cols=115 Identities=19% Similarity=0.224 Sum_probs=87.8
Q ss_pred ceEEEEEcCC--cchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCC--C--------------------CC
Q 028841 3 TKVYIVYYSM--YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAP--P--------------------KS 58 (203)
Q Consensus 3 ~kilii~~S~--~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~--~--------------------~~ 58 (203)
+|||||++|+ .++|..|++.+.+++++ .|.+|+++||.+..++.++.+..+. . .+
T Consensus 23 MKiLII~aHP~~~S~n~aL~~~~~~~l~~-~G~eV~v~DLy~~~f~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (280)
T 4gi5_A 23 MKVLLIYAHPEPRSLNGALKNFAIRHLQQ-AGHEVQVSDLYAMRWKAGYDADDSGAPPVGEFWRPTLDSKQAFAQGTQSA 101 (280)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHH-TTCEEEEEETTTTTCCCSCCGGGSSSSCSSSSCCHHHHHHHHHHHTCSCH
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHH-CCCeEEEEEccccCCCCcCCHHHhcccccccccChhhHHHHHhhcCCCcH
Confidence 3999999997 47899999999999999 7999999999987665444322111 0 01
Q ss_pred CCCCCChhhhhhcCeeEEeccccCCccHHHHHHHHHHhccc-c----------------cccCCCCCceEEEEecCCC
Q 028841 59 DVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGL-W----------------RTQQLAGKPAGMFYSTGSQ 119 (203)
Q Consensus 59 d~~~~~~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~-~----------------~~~~l~gK~~~~~~t~g~~ 119 (203)
|+. ...+++.+||.|||++|+||+++|+.+|.|||++... | ..+.++||++.+++|.|++
T Consensus 102 dv~-~~~~~l~~aD~iv~~~P~~w~~~Pa~lK~~iDrv~~~g~ay~~~~~~~~~~~~~~~~g~l~gKk~~l~~T~g~~ 178 (280)
T 4gi5_A 102 DIV-AEQEKLLWADTVIFQFPLWWFSMPAIMKGWIDRVYAWGFAYGVGEHSDRHWGDRYGEGTFVGKRAMLIVTAGGW 178 (280)
T ss_dssp HHH-HHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBSCSCBSSSCBSSCSSCSTTTTCEEEEEEECSSC
T ss_pred HHH-HHHHHHHhCCEEEEEeccccccCcHHHHHHHHHhcccCceeccCCccccccccccCccccCCCEEEEEEecCCC
Confidence 111 1256799999999999999999999999999998422 1 1235789999999998764
No 57
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=99.74 E-value=5e-17 Score=121.60 Aligned_cols=123 Identities=16% Similarity=0.194 Sum_probs=89.7
Q ss_pred eEEEEEcCCc---chHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 4 KVYIVYYSMY---GHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 4 kilii~~S~~---g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
|||||++|++ +++.++++.+++.+ .+|+++||.+. + |+. ...+++.+||.|||++|+
T Consensus 2 kiLii~ghP~~~~S~~~~~l~~~~~~~-----~~v~v~dL~~~-~-------------D~~-~~~~~l~~aD~iV~~~P~ 61 (177)
T 3ha2_A 2 QTLIIVAHPELARSNTQPFFKAAIENF-----SNVTWHPLVAD-F-------------NVE-QEQSLLLQNDRIILEFPL 61 (177)
T ss_dssp CEEEEECCTTTTTCSSHHHHHHHHTTC-----TTEEEEECCTT-C-------------CHH-HHHHHHHTCSEEEEEEEC
T ss_pred eEEEEEcCCCcccCHHHHHHHHHHhcC-----CCEEEEECCCc-c-------------cHH-HHHHHHHhCCEEEEECCh
Confidence 8999999975 66777777777665 26899999871 1 110 025789999999999999
Q ss_pred cCCccHHHHHHHHHHhccc-cc---ccCCCCCceEEEEecCCCCC----------ChHHHHHHHHHHHHHcCcEEecCCC
Q 028841 81 RFGMMAAQFKAFLDATGGL-WR---TQQLAGKPAGMFYSTGSQGG----------GQETTALTAITQLVHHGMIFVPIGY 146 (203)
Q Consensus 81 y~~~~~~~~k~~ld~~~~~-~~---~~~l~gK~~~~~~t~g~~~~----------~~~~~~~~l~~~l~~~g~~~v~~~~ 146 (203)
||+++|+.+|.|+||+... |. .+.++||++.+++|+|++.. ..+..+..+...+..+||.+++...
T Consensus 62 y~~~~pa~lK~~iDrv~~~g~~~~~~~~l~gK~~~~~~t~g~~~~~y~~~g~~g~~~~~~l~p~~~~~~~~G~~~~~~~~ 141 (177)
T 3ha2_A 62 YWYSAPALLKQWMDTVMTTKFATGHQYALEGKELGIVVSTGDNGNAFQAGAAEKFTISELMRPFEAFANKTKMMYLPILA 141 (177)
T ss_dssp BTTBCCHHHHHHHHHHSCHHHHSTTTCTTTTCEEEEEEEESSCGGGSSTTSTTCSCHHHHTHHHHHHHHHTTCEECCCEE
T ss_pred hhccCCHHHHHHHHHHhhcccccCCCcCCCCCEEEEEEeCCCChHHhcccCcccCCHHHHHHHHHHHHHhCCCeEeCeEE
Confidence 9999999999999997532 11 24689999999999886521 1222233345566778999987543
No 58
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=99.73 E-value=9.5e-18 Score=141.07 Aligned_cols=160 Identities=17% Similarity=0.193 Sum_probs=108.8
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccC
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRF 82 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~ 82 (203)
+|||||++|++.++..+.+.+.+.+.+ ..++++++|.+..|. ..+|+. ...+++.+||.|||++|+||
T Consensus 237 mkiLvi~gspr~~ss~~n~~l~~~~~~--~~~v~v~dL~~~~p~---------~~~d~~-~~~~~l~~aD~iv~~~P~yw 304 (413)
T 3l9w_A 237 GMILIIYAHPYPHHSHANKRMLEQART--LEGVEIRSLYQLYPD---------FNIDIA-AEQEALSRADLIVWQHPMQW 304 (413)
T ss_dssp CCEEEEECCSCGGGCSHHHHHHHHHHT--SSSEEEEEHHHHCTT---------SCCCHH-HHHHHHHTCSEEEEEEECBT
T ss_pred CCEEEEEECCCcchHHHHHHHHHHHhc--CCCEEEEEchhhCCC---------CcHHHH-HHHHHHHhCCEEEEECchhh
Confidence 499999999876554466666666654 347899998654331 011221 12678999999999999999
Q ss_pred CccHHHHHHHHHHhccc-c----cccCCCCCceEEEEecCCCCC--------ChHHHHHHHHHHHHHcCcEEecCCCcCC
Q 028841 83 GMMAAQFKAFLDATGGL-W----RTQQLAGKPAGMFYSTGSQGG--------GQETTALTAITQLVHHGMIFVPIGYTFG 149 (203)
Q Consensus 83 ~~~~~~~k~~ld~~~~~-~----~~~~l~gK~~~~~~t~g~~~~--------~~~~~~~~l~~~l~~~g~~~v~~~~~~~ 149 (203)
+++|+.||+|||++... | ....++||++.+++|+|++.+ +....+..+...+..+||.+++..+..|
T Consensus 305 ~~~Pa~lK~~iDrv~~~g~~y~~~~~~l~gK~~~~~~t~g~~~~~y~~~~~~~~~~~l~~l~~~~~~~G~~~l~~~~~~g 384 (413)
T 3l9w_A 305 YSIPPLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNWLPPFAMHC 384 (413)
T ss_dssp TBCCHHHHHHHHHHSCBTTTBSTTCCTTTTCEEEEEEECSSCGGGGCCSSSCSGGGGGHHHHHHHHHTTCEECCCEEECC
T ss_pred ccCCHHHHHHHHHHHhcCceecCCCCccccceEEEEEeCCCChHhhCCCCccCchHHHHHHHHHHHhCCCeecceEEEcC
Confidence 99999999999998543 1 122589999999988876421 1111234466677788999987543211
Q ss_pred CCccccccccCCCCCccceecCCCCCCC-CHHHHHHHHHHHHHHHHHHHH
Q 028841 150 AGMFEMEKVKGGSPYGAGTFAGDGSRQP-TELELEQAFHQGKHIAGIAKK 198 (203)
Q Consensus 150 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~ 198 (203)
. ..+ +++..+.++++.++|.+++.+
T Consensus 385 ----------------~--------~~~~d~~~~~~~~~~~~~L~~~~~~ 410 (413)
T 3l9w_A 385 ----------------T--------FICDDETLEGQARHYKQRLLEWQEA 410 (413)
T ss_dssp ----------------S--------TTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ----------------C--------CCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 0 123 345567888888888887754
No 59
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=99.65 E-value=3.1e-15 Score=115.07 Aligned_cols=119 Identities=16% Similarity=-0.031 Sum_probs=95.0
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecccc-
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR- 81 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y- 81 (203)
++++|+|+|++|||+.+|+.|++.+. .|++++++++.+.+ .+++..++.+||++|+|
T Consensus 41 ~kv~IlYgS~tGnte~~A~~La~~l~--~g~~v~v~~l~~~~--------------------~~~l~~~~~vI~~tsTyG 98 (219)
T 3hr4_A 41 VRVTILFATETGKSEALAWDLGALFS--CAFNPKVVCMDKYR--------------------LSCLEEERLLLVVTSTFG 98 (219)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHT--TTSEEEEEEGGGCC--------------------GGGGGTCSEEEEEEECBT
T ss_pred CcEEEEEECCchHHHHHHHHHHHHHH--cCCCeEEEEcccCC--------------------HhHhccCCeEEEEEeccC
Confidence 48999999999999999999999984 58899999988764 24678899999999999
Q ss_pred CCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCC
Q 028841 82 FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 82 ~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~ 145 (203)
.|.+|..++.|++.+... ...++|+++++|+.+++.....-.....+.+.|...|+..+...
T Consensus 99 ~Ge~Pdna~~F~~~L~~~--~~~l~~~~~aVfGlGdssY~~F~~a~k~ld~~L~~lGa~~l~~~ 160 (219)
T 3hr4_A 99 NGDCPGNGEKLKKSLFML--KELNNKFRYAVFGLGSSMYPRFCAFAHDIDQKLSHLGASQLTPM 160 (219)
T ss_dssp TTBCCGGGHHHHHHHHHC--CCCSSCCEEEEEEEECTTSSSTTHHHHHHHHHHHHHTCEESSCC
T ss_pred CCcCCHHHHHHHHHHHhc--chhhcCCEEEEEeCCCcchHHHhHHHHHHHHHHHHCCCCEeeCC
Confidence 688999999999988532 12478999999998765443222335567788888899987543
No 60
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=99.61 E-value=4.5e-15 Score=131.90 Aligned_cols=149 Identities=16% Similarity=-0.004 Sum_probs=115.0
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcc-cCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhc-CeeEEecc
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGAS-SVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEA-DGFVFGFP 79 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~-~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~a-D~iiigsP 79 (203)
|+|++|+|+|++|||+.+|+.|++.+. + .|.+++++++.+.+ .+.+.++ |.|||++|
T Consensus 49 ~~ki~IlY~S~tGnte~~A~~ia~~l~~~-~g~~v~v~~l~~~~--------------------~~~l~~~~~~vi~~~s 107 (682)
T 2bpo_A 49 NKNYLVLYASQTGTAEGFAKAFSKELVAK-FNLNVMCADVENYD--------------------FESLNDVPVIVSIFIS 107 (682)
T ss_dssp TCSEEEEEECSSSHHHHHHHHHHHHHHHH-HCCCEEEEETTSSC--------------------GGGGGGCCSEEEEEEE
T ss_pred CCeEEEEEECCchHHHHHHHHHHHHhHHh-cCCceEEeehHHCC--------------------HHHHhhcCCeEEEEeC
Confidence 458999999999999999999999998 6 68899999998764 3467788 99999999
Q ss_pred cc-CCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccc
Q 028841 80 TR-FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKV 158 (203)
Q Consensus 80 ~y-~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~ 158 (203)
+| .|.+|..++.|++++.... ...+++|++++|+.+.............+.+.|...|+..+.....+
T Consensus 108 T~G~G~~p~~~~~F~~~l~~~~-~~~L~~~~~avfGlGds~Y~~f~~a~k~l~~~L~~lGa~~l~~~~~~---------- 176 (682)
T 2bpo_A 108 TYGEGDFPDGAVNFEDFICNAE-AGALSNLRYNMFGLGNSTYEFFNGAAKKAEKHLSAAGAIRLGKLGEA---------- 176 (682)
T ss_dssp CBTTTBCCSSCHHHHHHHHTCC-TTSSTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSCCEEE----------
T ss_pred ccCCCCCCHHHHHHHHHHHhcc-chhccCCEEEEEecCCCCchhHhHHHHHHHHHHHHCCCeEeECcEEE----------
Confidence 99 8999999999999986431 12489999999996544333222335567888999999988654221
Q ss_pred cCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028841 159 KGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKK 198 (203)
Q Consensus 159 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~ 198 (203)
. ..+ ++..+.++.|++.|...+..
T Consensus 177 D---------------~~~-~~~~~~~~~W~~~l~~~l~~ 200 (682)
T 2bpo_A 177 D---------------DGA-GTTDEDYMAWKDSILEVLKD 200 (682)
T ss_dssp E---------------TTT-TCHHHHHHHHHHHHHHHHHH
T ss_pred e---------------cCC-cccHHHHHHHHHHHHHHHHh
Confidence 0 123 45677899999998877654
No 61
>2xod_A NRDI protein, NRDI; flavoprotein, redox protein, ribonucleotide reductase; HET: FMN; 0.96A {Bacillus anthracis} PDB: 2xoe_A* 2x2o_A* 2x2p_A*
Probab=99.46 E-value=2.2e-13 Score=95.34 Aligned_cols=116 Identities=19% Similarity=0.196 Sum_probs=77.6
Q ss_pred EEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccC-C
Q 028841 5 VYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRF-G 83 (203)
Q Consensus 5 ilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~-~ 83 (203)
++|+|+|++|||+++|+.|+ + .| + ++.+ +.+ .+|.|||++|+|+ |
T Consensus 1 ~~I~Y~S~tGnT~~~A~~ia--~---~~--~---~i~~-----------------------~~~-~~~~ii~g~pt~~~g 46 (119)
T 2xod_A 1 MLVAYDSMTGNVKRFIHKLN--M---PA--V---QIGE-----------------------DLV-IDEDFILITYTTGFG 46 (119)
T ss_dssp CEEEECCSSSHHHHHHHHHT--S---CE--E---ECCT-----------------------TCC-CCSCEEEEECCBTTT
T ss_pred CEEEEECCChhHHHHHHHhc--c---cC--C---CcCc-----------------------ccc-cCCCEEEEEeecCCC
Confidence 47899999999999999998 3 22 2 2211 123 4999999999996 9
Q ss_pred ccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCC-hHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccCCC
Q 028841 84 MMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGG-QETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGS 162 (203)
Q Consensus 84 ~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~-~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~~ 162 (203)
.+|..++.|++. +++|++++|++++...+. .......+.+.+. ... . ..+.
T Consensus 47 ~~p~~~~~fl~~---------~~~~~~~v~g~G~~~y~~~~~~~~~~l~~~~~---~~~---~----------~~~~--- 98 (119)
T 2xod_A 47 NVPERVLEFLER---------NNEKLKGVSASGNRNWGDMFGASADKISAKYE---VPI---V----------SKFE--- 98 (119)
T ss_dssp BCCHHHHHHHHH---------HGGGEEEEEEEECGGGGGGTTHHHHHHHHHHT---CCE---E----------EEEE---
T ss_pred cCCHHHHHHHHH---------cCCCEEEEEEeCCChHHHHHHHHHHHHHHHhC---Ccc---E----------EEEe---
Confidence 999999999976 357899999886432221 1111223333332 100 0 0112
Q ss_pred CCccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 028841 163 PYGAGTFAGDGSRQPTELELEQAFHQGKHIAG 194 (203)
Q Consensus 163 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~ 194 (203)
..|+++|++++++++++|++
T Consensus 99 ------------~~~~~~d~~~~~~~~~~i~~ 118 (119)
T 2xod_A 99 ------------LSGTNNDVEYFKERVREIAT 118 (119)
T ss_dssp ------------TTCCHHHHHHHHHHHHHHTC
T ss_pred ------------cCCCHHHHHHHHHHHHHhcc
Confidence 37889999999999998753
No 62
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=99.43 E-value=6.9e-13 Score=116.69 Aligned_cols=122 Identities=17% Similarity=0.116 Sum_probs=93.8
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhh--hcCeeEEeccc
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELA--EADGFVFGFPT 80 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~--~aD~iiigsP~ 80 (203)
++++|+|+|++|||+.+|+.|++.+.+ .|+++++.++.+.+..+. ..+. +++.+||++|+
T Consensus 19 ~~i~I~YgS~tGnte~~A~~la~~l~~-~g~~~~v~~~~~~~~~~l-----------------~~~~~~~~~~vi~~~sT 80 (618)
T 3qe2_A 19 RNIIVFYGSQTGTAEEFANRLSKDAHR-YGMRGMSADPEEYDLADL-----------------SSLPEIDNALVVFCMAT 80 (618)
T ss_dssp CSEEEEEECSSSHHHHHHHHHHHHGGG-GTCCEEEECGGGSCGGGG-----------------GGGGGSTTCEEEEEEEC
T ss_pred CeEEEEEECChhHHHHHHHHHHHHHHh-CCCceEEechHHcCHHHh-----------------hhcccccCcEEEEEcCc
Confidence 479999999999999999999999988 799999999877654321 1121 58999999999
Q ss_pred c-CCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecC
Q 028841 81 R-FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPI 144 (203)
Q Consensus 81 y-~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~ 144 (203)
| .|.+|..++.|++++... ...++|+++++|+.+.............+.+.|...|+..+..
T Consensus 81 ~G~G~~pd~~~~F~~~L~~~--~~~l~~~~~avfGlGd~~Y~~f~~~~k~~d~~L~~lGa~~~~~ 143 (618)
T 3qe2_A 81 YGEGDPTDNAQDFYDWLQET--DVDLSGVKFAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIFE 143 (618)
T ss_dssp BGGGBCCGGGHHHHHHHHHC--CCCCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEESSC
T ss_pred cCCCCCCHHHHHHHHHHhhc--cccccCCEEEEEeCCCCCcHhHhHHHHHHHHHHHhCCCCEeec
Confidence 9 799999999999998531 1368999999999654433222223445677888889888753
No 63
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=99.37 E-value=8.1e-12 Score=111.12 Aligned_cols=146 Identities=16% Similarity=-0.062 Sum_probs=108.0
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecccc-C
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR-F 82 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y-~ 82 (203)
|++|+|+|.+|||+.+|+.|++.+. .|++++++++.+.+ ...+..++.|||++|+| +
T Consensus 13 k~~IlY~S~TG~te~~A~~l~~~l~--~~~~~~v~~m~~~d--------------------~~~l~~~~~vl~vtsT~G~ 70 (688)
T 1tll_A 13 KATILYATETGKSQAYAKTLCEIFK--HAFDAKAMSMEEYD--------------------IVHLEHEALVLVVTSTFGN 70 (688)
T ss_dssp EEEEEEECSSSHHHHHHHHHHHHHT--TTSEEEEEETTTSC--------------------TTSGGGCSEEEEEECCBTT
T ss_pred eEEEEEECCchHHHHHHHHHHHHHh--cCCCcEEeecccCC--------------------hhHhccCceEEEEEcccCC
Confidence 7999999999999999999999986 48899999998764 23577889999999999 8
Q ss_pred CccHHHHHHHHHHhcccc----------------------------------------cccCCCCCceEEEEecCCCCCC
Q 028841 83 GMMAAQFKAFLDATGGLW----------------------------------------RTQQLAGKPAGMFYSTGSQGGG 122 (203)
Q Consensus 83 ~~~~~~~k~~ld~~~~~~----------------------------------------~~~~l~gK~~~~~~t~g~~~~~ 122 (203)
|.+|..+..|++++...- ....+.|+++++|+.+......
T Consensus 71 Gdpp~n~~~F~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~L~~~~~aVfGlGds~Y~~ 150 (688)
T 1tll_A 71 GDPPENGEKFGCALMEMRHPNSVQEERKSYKVRFNSVSSYSDSRKSSGDGPDLRDNFESTGPLANVRFSVFGLGSRAYPH 150 (688)
T ss_dssp TBCCGGGHHHHHHHHHHTC-----CCCCCHHHHTSCCC----------------------CTTTTCEEEEEEEECTTSSS
T ss_pred CcCCHHHHHHHHHHHhccCCccccccccccccccccccccccccccccccccccccccccccCCCCeEEEEeeccCchHH
Confidence 999999999999875320 0124789999999976433322
Q ss_pred hHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028841 123 QETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKK 198 (203)
Q Consensus 123 ~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~ 198 (203)
.-.....+.+.|...|+..+.....+ + .. .++.+.++.+++.+.+.+..
T Consensus 151 F~~~~k~ld~~L~~lGa~rl~~~~~~-----------------------D--~~--~g~e~~f~~W~~~~~~~l~~ 199 (688)
T 1tll_A 151 FCAFGHAVDTLLEELGGERILKMREG-----------------------D--EL--CGQEEAFRTWAKKVFKAACD 199 (688)
T ss_dssp TTHHHHHHHHHHHHTTCEESSCCEEE-----------------------E--TT--TTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCceeecceee-----------------------c--cC--CCcHHHHHHHHHHHHHHHHH
Confidence 22234557788888898887543210 0 01 13567788999988877644
No 64
>1rlj_A NRDI protein; flavoprotein, FMN, thioredoxin, alpha/beta/alpha sandwich, structural genomics, PSI, protein structure initiative; HET: FMN; 2.00A {Bacillus subtilis} SCOP: c.23.5.7
Probab=99.14 E-value=6.3e-11 Score=84.93 Aligned_cols=117 Identities=18% Similarity=0.168 Sum_probs=76.6
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecccc-C
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR-F 82 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y-~ 82 (203)
+++|+|+|.+|||+.+|+.|++. . .+++.+ .+...|.+||++|+| .
T Consensus 10 ~i~I~Y~S~TGNt~~vA~~l~~~-------~--~~~i~~------------------------~~~~~~~~ilv~pTyG~ 56 (139)
T 1rlj_A 10 MVQIIFDSKTGNVQRFVNKTGFQ-------Q--IRKVDE------------------------MDHVDTPFVLVTYTTNF 56 (139)
T ss_dssp CCEEEECCSSSHHHHHHTTSCCS-------E--EEETTS------------------------CSCCCSCEEEEECCBGG
T ss_pred EEEEEEECCChhHHHHHHHhccc-------c--ceEecc------------------------ccccCCCEEEEEcCcCC
Confidence 68899999999999999887431 1 223321 134458899999999 6
Q ss_pred CccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCC-hHHHHHHHHHHH-HHcCcEEecCCCcCCCCccccccccC
Q 028841 83 GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGG-QETTALTAITQL-VHHGMIFVPIGYTFGAGMFEMEKVKG 160 (203)
Q Consensus 83 ~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~-~~~~~~~l~~~l-~~~g~~~v~~~~~~~~~~~~~~~~~~ 160 (203)
|.+|..+..||+.. .++.++++++++...+. ... ..+.+ ..++..+... +.
T Consensus 57 G~~P~~v~~Fl~~~---------~~~~~~V~g~Gd~~yg~~f~~----a~~~i~~~~~~~~~~~-------------~e- 109 (139)
T 1rlj_A 57 GQVPASTQSFLEKY---------AHLLLGVAASGNKVWGDNFAK----SADTISRQYQVPILHK-------------FE- 109 (139)
T ss_dssp GBCCHHHHHHHHHH---------GGGEEEEEEEECGGGGGGTTH----HHHHHHHHHTCCEEEE-------------EE-
T ss_pred CcCcHHHHHHHHhC---------CCCEEEEEecCCCcHHHHHHH----HHHHHHHHcCCCCcce-------------EE-
Confidence 99999999999643 24677877766543222 111 22222 3344433221 11
Q ss_pred CCCCccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 028841 161 GSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAG 194 (203)
Q Consensus 161 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~ 194 (203)
..++++|.++++++.+++..
T Consensus 110 --------------l~g~~~D~~~~~~~~~~~~~ 129 (139)
T 1rlj_A 110 --------------LSGTSKDVELFTQEVERVVT 129 (139)
T ss_dssp --------------TTCCHHHHHHHHHHHHHHHH
T ss_pred --------------EcCCHHHHHHHHHHHHHHHH
Confidence 25678999999999988875
No 65
>3n3a_C Protein NRDI; ribonucleotide reductase, four-helix bundle, dimanganese CLU flavoprotein, oxidoreductase; HET: FMN; 1.99A {Escherichia coli} PDB: 3n39_C* 3n3b_C*
Probab=98.87 E-value=2e-09 Score=77.50 Aligned_cols=121 Identities=12% Similarity=0.172 Sum_probs=74.0
Q ss_pred EEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccC---
Q 028841 6 YIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRF--- 82 (203)
Q Consensus 6 lii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~--- 82 (203)
+|.|.|.+|||++.++.+.. . ..+ +++.+ .+.+...+-+|+++|+|.
T Consensus 24 ivYfsS~TGNT~rFv~kL~~-----~--~~~-I~~~~----------------------~~~~~~~ep~vlv~PTYg~g~ 73 (153)
T 3n3a_C 24 LVYFSSSSENTQRFIERLGL-----P--AVR-IPLNE----------------------RERIQVDEPYILIVPSYGGGG 73 (153)
T ss_dssp EEECCCTTCHHHHHHHHHCS-----C--CEE-CCSST----------------------TCCCCCCSCEEEEEECCTTSS
T ss_pred EEEEECCCcCHHHHHHHhCC-----c--ccc-ccccc----------------------CcccccCCCEEEEEeccCCCC
Confidence 44445679999999988732 1 111 22221 113456789999999998
Q ss_pred --CccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCCh-HHHHHHHHHHHHHcCcEEecCCCcCCCCcccccccc
Q 028841 83 --GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQ-ETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVK 159 (203)
Q Consensus 83 --~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~-~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~ 159 (203)
|.+|.++..||+... ..++..++++++....+.. -.+...+.+ +++...+ + ++.
T Consensus 74 ~~G~vP~~v~dFl~~~~-------n~~~~~gVigsGN~nfg~~Fc~A~d~ia~---k~~vP~l---~----------kfE 130 (153)
T 3n3a_C 74 TAGAVPRQVIRFLNDEH-------NRALLRGVIASGNRNFGEAYGRAGDVIAR---KCGVPWL---Y----------RFE 130 (153)
T ss_dssp SSSSSCHHHHHHHTSHH-------HHHHEEEEEEEECGGGGGGTTHHHHHHHH---HHTCCEE---E----------EEE
T ss_pred cCCcCcHHHHHHHhhhc-------ccCcEEEEEecCCCchhHHHHHHHHHHHH---HhCCCeE---E----------EEe
Confidence 999999999997542 2456678887765432221 122222222 3332111 1 111
Q ss_pred CCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 028841 160 GGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAG 194 (203)
Q Consensus 160 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~l~~ 194 (203)
..++++|.++++++++++.+
T Consensus 131 ---------------L~Gt~eDv~~v~~~~~~~~~ 150 (153)
T 3n3a_C 131 ---------------LMGTQSDIENVRKGVTEFWQ 150 (153)
T ss_dssp ---------------TTCCHHHHHHHHHHHHHHHH
T ss_pred ---------------CCCCHHHHHHHHHHHHHHHh
Confidence 37789999999999988764
No 66
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=97.43 E-value=0.00024 Score=48.22 Aligned_cols=84 Identities=15% Similarity=0.175 Sum_probs=58.5
Q ss_pred CCceEEEEEcCCcc--hHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEec
Q 028841 1 MATKVYIVYYSMYG--HVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGF 78 (203)
Q Consensus 1 Mm~kilii~~S~~g--~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigs 78 (203)
||+||+.|...++| +|.-.++.+.+..++ .|+++.+..-...-++. ....+++.+||.|||++
T Consensus 4 m~mkIvaVTaCptGiAHTyMAAeaL~~aA~~-~G~~ikVEtqGs~G~~n--------------~Lt~~~I~~Ad~VIiA~ 68 (111)
T 2kyr_A 4 MSKKLIALCACPMGLAHTFMAAQALEEAAVE-AGYEVKIETQGADGIQN--------------RLTAQDIAEATIIIHSV 68 (111)
T ss_dssp CCCEEEEEEEESSCHHHHHHHHHHHHHHHHH-TSSEEEEEEEETTEEES--------------CCCHHHHHHCSEEEEEE
T ss_pred ccccEEEEEcCCCcHHHHHHHHHHHHHHHHH-CCCeEEEEecCCCCcCC--------------CCCHHHHHhCCEEEEEe
Confidence 77799999999998 677778888888887 79988765433221110 11367899999999998
Q ss_pred cccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 79 PTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 79 P~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
-+- ++.. ..|.||++.-..+.
T Consensus 69 d~~-----------v~~~------~RF~GK~v~~~~v~ 89 (111)
T 2kyr_A 69 AVT-----------PEDN------ERFESRDVYEITLQ 89 (111)
T ss_dssp SSC-----------CTTG------GGGTTSCEEEEETT
T ss_pred CCC-----------cCch------hhcCCCeEEEeCHH
Confidence 754 1111 14789998877664
No 67
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=97.36 E-value=0.00028 Score=47.49 Aligned_cols=84 Identities=23% Similarity=0.204 Sum_probs=56.5
Q ss_pred CCceEEEEEcCCcc--hHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEec
Q 028841 1 MATKVYIVYYSMYG--HVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGF 78 (203)
Q Consensus 1 Mm~kilii~~S~~g--~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigs 78 (203)
||+||++|...++| +|.-.++.+.+..++ .|+++.+.--...-+. + ....+++.+||.||+++
T Consensus 1 m~mkivaVtaCptGiAhTymAAeaLekaA~~-~G~~ikVEtqgs~g~~-----------n---~Lt~~~I~~AD~VIia~ 65 (106)
T 2m1z_A 1 MKRKIIAVTACATGVAHTYMAAQALKKGAKK-MGNLIKVETQGATGIE-----------N---ELTEKDVNIGEVVIFAV 65 (106)
T ss_dssp CCCEEEEEEECSSCHHHHHHHHHHHHHHHHH-HTCEEEEEEEETTEES-----------S---CCCHHHHHHCSEEEEEE
T ss_pred CCccEEEEEECCCcHHHHHHHHHHHHHHHHH-CCCEEEEEEecCcccc-----------C---CCCHHHHhhCCEEEEec
Confidence 65699999888888 666668888888877 6888776554332110 0 11257899999999998
Q ss_pred cccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 79 PTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 79 P~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
.+--.. .+ .|.||++.-+.+.
T Consensus 66 d~~v~~--------~~---------RF~gk~v~~~~v~ 86 (106)
T 2m1z_A 66 DTKVRN--------KE---------RFDGKVVLEVPVS 86 (106)
T ss_dssp SSCCST--------HH---------HHTTSEEEEECTT
T ss_pred cccccc--------hh---------ccCCCcEEEEcHH
Confidence 754310 12 2568987766554
No 68
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=96.48 E-value=0.0076 Score=40.53 Aligned_cols=62 Identities=21% Similarity=0.259 Sum_probs=42.0
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecccc
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR 81 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y 81 (203)
|+||++++++.-+++ .+++.+.+.+++ .|.++++....-.. ..+.+.++|.|+++ |..
T Consensus 3 mkkIll~Cg~G~sTS-~l~~k~~~~~~~-~gi~~~i~a~~~~~-------------------~~~~~~~~Dvil~~-pqv 60 (106)
T 1e2b_A 3 KKHIYLFSSAGMSTS-LLVSKMRAQAEK-YEVPVIIEAFPETL-------------------AGEKGQNADVVLLG-PQI 60 (106)
T ss_dssp CEEEEEECSSSTTTH-HHHHHHHHHHHH-SCCSEEEEEECSSS-------------------TTHHHHHCSEEEEC-TTS
T ss_pred CcEEEEECCCchhHH-HHHHHHHHHHHH-CCCCeEEEEecHHH-------------------HHhhccCCCEEEEc-cch
Confidence 468999998866655 899999999998 78877655443221 13457889966655 554
Q ss_pred CCcc
Q 028841 82 FGMM 85 (203)
Q Consensus 82 ~~~~ 85 (203)
.+..
T Consensus 61 ~~~~ 64 (106)
T 1e2b_A 61 AYML 64 (106)
T ss_dssp GGGH
T ss_pred hhhH
Confidence 4443
No 69
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=96.45 E-value=0.0054 Score=41.74 Aligned_cols=58 Identities=16% Similarity=0.081 Sum_probs=42.0
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEE--EEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecc
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAK--LWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFP 79 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~--~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP 79 (203)
|+||+++++|.-|.+.-++..+.+.+.+ .|++++ ..++.+. ...+.++|.||.+.|
T Consensus 21 ~kkIlvvC~sG~gTS~ll~~kl~~~~~~-~gi~~~V~~~~~~~~---------------------~~~~~~~DlIist~~ 78 (113)
T 1tvm_A 21 KRKIIVACGGAVATSTMAAEEIKELCQS-HNIPVELIQCRVNEI---------------------ETYMDGVHLICTTAR 78 (113)
T ss_dssp SEEEEEESCSCSSHHHHHHHHHHHHHHH-TTCCEEEEEECTTTT---------------------TTSTTSCSEEEESSC
T ss_pred ccEEEEECCCCHHHHHHHHHHHHHHHHH-cCCeEEEEEecHHHH---------------------hhccCCCCEEEECCc
Confidence 4589999999889888889999999988 677644 3333332 123567898887776
Q ss_pred cc
Q 028841 80 TR 81 (203)
Q Consensus 80 ~y 81 (203)
+-
T Consensus 79 l~ 80 (113)
T 1tvm_A 79 VD 80 (113)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 70
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=95.65 E-value=0.012 Score=39.46 Aligned_cols=80 Identities=21% Similarity=0.224 Sum_probs=54.9
Q ss_pred eEEEEEcCCcc--hHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecccc
Q 028841 4 KVYIVYYSMYG--HVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR 81 (203)
Q Consensus 4 kilii~~S~~g--~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y 81 (203)
|++.|...++| +|.-.++.+.+..++ .|+++.+..-...-+.. ....+++.+||.|||.+-+-
T Consensus 4 kivaVTaCptGiAhTymAaeaL~~aA~~-~G~~ikVEtqGs~G~~n--------------~Lt~~~I~~Ad~VIiA~d~~ 68 (106)
T 2r4q_A 4 KILAVTACPTGIAHTFMAADALKEKAKE-LGVEIKVETNGSSGIKH--------------KLTAQEIEDAPAIIVAADKQ 68 (106)
T ss_dssp CEEEEEECSCC--CHHHHHHHHHHHHHH-HTCCEEEEEEETTEEES--------------CCCHHHHHHCSCEEEEESSC
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHHHH-CCCeEEEEecCCCCccC--------------CCCHHHHHhCCEEEEEeCCc
Confidence 89999999988 788888888888877 68887764332221110 11357899999999997653
Q ss_pred CCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 82 FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 82 ~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
+| . ..|.||++.-+.+.
T Consensus 69 -----------v~-~------~RF~GK~v~~~~v~ 85 (106)
T 2r4q_A 69 -----------VE-M------ERFKGKRVLQVPVT 85 (106)
T ss_dssp -----------CC-C------GGGTTSBEEEECHH
T ss_pred -----------cC-H------hHcCCCeEEEeCHH
Confidence 12 1 14789998776554
No 71
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=95.54 E-value=0.019 Score=38.44 Aligned_cols=80 Identities=23% Similarity=0.225 Sum_probs=54.8
Q ss_pred eEEEEEcCCcc--hHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecccc
Q 028841 4 KVYIVYYSMYG--HVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR 81 (203)
Q Consensus 4 kilii~~S~~g--~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y 81 (203)
|++.|...++| +|.-.++.+.+..++ .|+++.+..-...-+.. ....+++.+||.|||.+-+-
T Consensus 4 kivaVTaCptGiAhTymAaeaL~~aA~~-~G~~ikVEtqGs~G~~n--------------~Lt~~~I~~Ad~VIiA~d~~ 68 (106)
T 2r48_A 4 KLLAITSCPNGIAHTYMAAENLQKAADR-LGVSIKVETQGGIGVEN--------------KLTEEEIREADAIIIAADRS 68 (106)
T ss_dssp EEEEEEECSSCSHHHHHHHHHHHHHHHH-HTCEEEEEEEETTEEES--------------CCCHHHHHHCSEEEEEESSC
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHHHH-CCCeEEEEecCCCCccC--------------CCCHHHHHhCCEEEEEeCCc
Confidence 89999999988 677778888888877 68887764332221110 11357899999999997653
Q ss_pred CCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 82 FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 82 ~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
+| . ..|.||++.-+.+.
T Consensus 69 -----------v~-~------~RF~GK~v~~~~v~ 85 (106)
T 2r48_A 69 -----------VN-K------DRFIGKKLLSVGVQ 85 (106)
T ss_dssp -----------CC-C------GGGTTSBEEEECHH
T ss_pred -----------cC-H------hHcCCCeEEEeCHH
Confidence 12 1 14789998876554
No 72
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=95.42 E-value=0.013 Score=39.57 Aligned_cols=57 Identities=16% Similarity=0.053 Sum_probs=38.3
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCce-EEE--EEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEec
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVE-AKL--WQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGF 78 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~-v~~--~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigs 78 (203)
|+||+++++|.-|.+.-+...+.+.+.+ .|++ +++ .++.+. ...+.++|.||.+.
T Consensus 18 ~~kIlvvC~sG~gTS~m~~~kl~~~~~~-~gi~~~~i~~~~~~~~---------------------~~~~~~~DlIi~t~ 75 (110)
T 3czc_A 18 MVKVLTACGNGMGSSMVIKMKVENALRQ-LGVSDIESASCSVGEA---------------------KGLASNYDIVVASN 75 (110)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHHHHH-TTCCCEEEEEECHHHH---------------------HHHGGGCSEEEEET
T ss_pred CcEEEEECCCcHHHHHHHHHHHHHHHHH-cCCCeEEEEEeeHHHH---------------------hhccCCCcEEEECC
Confidence 5689988888777777666699999987 6766 443 333221 12356899777766
Q ss_pred cc
Q 028841 79 PT 80 (203)
Q Consensus 79 P~ 80 (203)
|+
T Consensus 76 ~l 77 (110)
T 3czc_A 76 HL 77 (110)
T ss_dssp TT
T ss_pred ch
Confidence 54
No 73
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=95.28 E-value=0.039 Score=37.12 Aligned_cols=77 Identities=17% Similarity=0.123 Sum_probs=49.6
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEE--cCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecccc
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQ--VPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR 81 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~--l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y 81 (203)
||++++++ ...|.-+++.+.+.+++ .|.++++.- ..+. .+.+.++|.|++| |--
T Consensus 8 kIlL~C~a-GmSTsllv~km~~~a~~-~gi~v~i~a~~~~~~---------------------~~~~~~~DvvLLg-PQV 63 (108)
T 3nbm_A 8 KVLVLCAG-SGTSAQLANAINEGANL-TEVRVIANSGAYGAH---------------------YDIMGVYDLIILA-PQV 63 (108)
T ss_dssp EEEEEESS-SSHHHHHHHHHHHHHHH-HTCSEEEEEEETTSC---------------------TTTGGGCSEEEEC-GGG
T ss_pred eEEEECCC-CCCHHHHHHHHHHHHHH-CCCceEEEEcchHHH---------------------HhhccCCCEEEEC-hHH
Confidence 78877665 46778899999999988 688888854 3332 2356789988875 433
Q ss_pred CCccHHHHHHHHHHhcccccccCCCCCceEEEEe
Q 028841 82 FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYS 115 (203)
Q Consensus 82 ~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t 115 (203)
-+... .++... .-.|+|+.++-.
T Consensus 64 ~y~~~-~ik~~~----------~~~~ipV~vI~~ 86 (108)
T 3nbm_A 64 RSYYR-EMKVDA----------ERLGIQIVATRG 86 (108)
T ss_dssp GGGHH-HHHHHH----------TTTTCEEEECCH
T ss_pred HHHHH-HHHHHh----------hhcCCcEEEeCH
Confidence 33322 223221 234788887754
No 74
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=95.09 E-value=0.05 Score=42.45 Aligned_cols=73 Identities=15% Similarity=-0.025 Sum_probs=43.2
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecccc
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR 81 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y 81 (203)
|+++|||-+|.... -+..+.+.+++ .|++|++++..+... ..++|.++|+||+.....
T Consensus 4 m~~vLiV~g~~~~~---~a~~l~~aL~~-~g~~V~~i~~~~~~~------------------~~~~L~~yDvIIl~d~~~ 61 (259)
T 3rht_A 4 MTRVLYCGDTSLET---AAGYLAGLMTS-WQWEFDYIPSHVGLD------------------VGELLAKQDLVILSDYPA 61 (259)
T ss_dssp --CEEEEESSCTTT---THHHHHHHHHH-TTCCCEEECTTSCBC------------------SSHHHHTCSEEEEESCCG
T ss_pred CceEEEECCCCchh---HHHHHHHHHHh-CCceEEEeccccccc------------------ChhHHhcCCEEEEcCCcc
Confidence 68999997664322 22334444444 688999887665421 146899999999984222
Q ss_pred CCccHHHHHHHHHHh
Q 028841 82 FGMMAAQFKAFLDAT 96 (203)
Q Consensus 82 ~~~~~~~~k~~ld~~ 96 (203)
..-.+..++.+-+++
T Consensus 62 ~~l~~~~~~~L~~yV 76 (259)
T 3rht_A 62 ERMTAQAIDQLVTMV 76 (259)
T ss_dssp GGBCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHH
Confidence 122345566666655
No 75
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=94.98 E-value=0.052 Score=41.97 Aligned_cols=107 Identities=12% Similarity=-0.050 Sum_probs=56.9
Q ss_pred CceEEEEEcCC----------cchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHH--hc-----c-C-CCCC--CCCC
Q 028841 2 ATKVYIVYYSM----------YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEV--LG-----K-M-SAPP--KSDV 60 (203)
Q Consensus 2 m~kilii~~S~----------~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~--~~-----~-~-~~~~--~~d~ 60 (203)
|+|||||..|. +|....=+-...+.+++ .|++|+++......+-+. ++ . . .... ....
T Consensus 3 m~kvlivlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~-aG~~V~iaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~ 81 (244)
T 3kkl_A 3 PKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEK-HGFEVDFVSETGGFGWDEHYLPKSFIGGEDKMNFETKNSAF 81 (244)
T ss_dssp CCEEEEECCCCCCCCSTTSCCCCBCHHHHHHHHHHHHT-TTCEEEEEESSSCCCBCTTC--------------------C
T ss_pred CCEEEEEECCCCcccCCCCCcCcccHHHHHHHHHHHHH-CCCEEEEEeCCCCCCcCCccccccccCHHHHHHHHHhhHHH
Confidence 67999998762 46544334445577777 799999998754321000 00 0 0 0000 0000
Q ss_pred -----CCCChh--hhhhcCeeEEec--c-ccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 61 -----PIITPN--ELAEADGFVFGF--P-TRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 61 -----~~~~~~--~l~~aD~iiigs--P-~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
.....+ ...++|+|++.- + .+.....+.+..|+.+.. -.||+++.+|++
T Consensus 82 ~~~l~~~~~l~~v~~~~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~-------~~gk~iaaIC~G 140 (244)
T 3kkl_A 82 NKALARIKTANEVNASDYKVFFASAGHGALFDYPKAKNLQDIASKIY-------ANGGVIAAICHG 140 (244)
T ss_dssp HHHHHTCEEGGGCCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHH-------HTTCEEEEETTG
T ss_pred HHHhcCCCChHHCCHhhCCEEEEcCCCchhhhcccCHHHHHHHHHHH-------HcCCEEEEECHH
Confidence 000011 346799998843 2 243444567777877763 357777777654
No 76
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=94.80 E-value=0.028 Score=37.80 Aligned_cols=56 Identities=18% Similarity=0.179 Sum_probs=38.0
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
||+++++|.-|++ -+++.+.+.+.+ .|+++++....-... .+.+.++|.|+.+.++
T Consensus 6 kIlvvC~~G~~TS-ll~~kl~~~~~~-~gi~~~i~~~~~~~~-------------------~~~~~~~D~Ii~t~~l 61 (109)
T 2l2q_A 6 NILLVCGAGMSTS-MLVQRIEKYAKS-KNINATIEAIAETRL-------------------SEVVDRFDVVLLAPQS 61 (109)
T ss_dssp EEEEESSSSCSSC-HHHHHHHHHHHH-HTCSEEEEEECSTTH-------------------HHHTTTCSEEEECSCC
T ss_pred EEEEECCChHhHH-HHHHHHHHHHHH-CCCCeEEEEecHHHH-------------------HhhcCCCCEEEECCcc
Confidence 7889888887877 899999999988 677655433222111 2346789977666554
No 77
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=93.16 E-value=0.17 Score=37.75 Aligned_cols=46 Identities=17% Similarity=0.324 Sum_probs=31.6
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEE
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVF 76 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iii 76 (203)
|.+||+||-+- .||+..+.+++.+ .|+++++++ + .+++.++|+||+
T Consensus 1 M~~~I~iiD~g-~~n~~si~~al~~-----~G~~~~v~~--~----------------------~~~l~~~D~lil 46 (211)
T 4gud_A 1 MTQNVVIIDTG-CANISSVKFAIER-----LGYAVTISR--D----------------------PQVVLAADKLFL 46 (211)
T ss_dssp --CCEEEECCC-CTTHHHHHHHHHH-----TTCCEEEEC--C----------------------HHHHHHCSEEEE
T ss_pred CCCEEEEEECC-CChHHHHHHHHHH-----CCCEEEEEC--C----------------------HHHHhCCCEEEE
Confidence 77789999432 2678877777643 477887652 1 457889999999
No 78
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=92.77 E-value=0.17 Score=38.15 Aligned_cols=107 Identities=12% Similarity=-0.005 Sum_probs=55.5
Q ss_pred CCceEEEEEcCC--------cchHHHHHHHHHHhcccCCCceEEEEEcCCCCcH--H-Hhc-c-CC-----CCCCCCCCC
Q 028841 1 MATKVYIVYYSM--------YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPE--E-VLG-K-MS-----APPKSDVPI 62 (203)
Q Consensus 1 Mm~kilii~~S~--------~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~--~-~~~-~-~~-----~~~~~d~~~ 62 (203)
||+||+|+..|. .|....=+-...+.++. .|++++++........ . .+. . .. .....+...
T Consensus 4 m~~kv~ill~~~~~~~~~~~~G~~~~e~~~p~~~l~~-ag~~v~~vs~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~l 82 (224)
T 1u9c_A 4 MSKRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQE-KGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARL 82 (224)
T ss_dssp CCCEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHH-TTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEEC
T ss_pred CCceEEEEECCcccccCCCCCceeHHHHHHHHHHHHH-CCCeEEEECCCCCccccCccccccHHHHHhhhhHhhcCCCCh
Confidence 678999988852 44433223334556666 5889999887653211 0 000 0 00 000011100
Q ss_pred CChhhhhhcCeeEEecc---ccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 63 ITPNELAEADGFVFGFP---TRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 63 ~~~~~l~~aD~iiigsP---~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
......++|+||+.-. .+...-.+.+..||.+.. -.+|+++.++++
T Consensus 83 -~~~~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~-------~~~k~iaaiC~G 131 (224)
T 1u9c_A 83 -SKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFA-------EDGRIIAAVCHG 131 (224)
T ss_dssp -CGGGGSSCSEEEECCCTTHHHHSTTCHHHHHHHHHHH-------HTTCEEEEETTG
T ss_pred -HHcChhhCCEEEECCCcchHHHhhcCHHHHHHHHHHH-------HCCCEEEEEChH
Confidence 0112357999988532 233333466777777653 357777777764
No 79
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=92.08 E-value=0.25 Score=37.98 Aligned_cols=41 Identities=17% Similarity=0.105 Sum_probs=24.8
Q ss_pred CCceEEEEEcC---CcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 1 MATKVYIVYYS---MYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 1 Mm~kilii~~S---~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
||+||+|+..| ..|....=+-...+.+++ .|++++++....
T Consensus 22 M~kkV~ill~~~~~~dG~e~~E~~~p~~vL~~-aG~~V~~~S~~~ 65 (242)
T 3l3b_A 22 MALNSAVILAGCGHMDGSEIREAVLVMLELDR-HNVNFKCFAPNK 65 (242)
T ss_dssp --CEEEEECCCSSTTTSCCHHHHHHHHHHHHH-TTCEEEEEECSS
T ss_pred ccCEEEEEEecCCCCCCeeHHHHHHHHHHHHH-CCCEEEEEecCC
Confidence 55899988764 245433223334466666 688999988754
No 80
>1vkr_A Mannitol-specific PTS system enzyme iiabc compone; phosphotransferase, transferase, kinase, sugar transport; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1vrv_A* 2few_B*
Probab=92.03 E-value=0.17 Score=34.80 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=27.5
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCc-eEEE
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGV-EAKL 37 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~-~v~~ 37 (203)
|+||+++++|.-|.+.-++..+.+.+.+ .|+ ++++
T Consensus 13 ~kkIlvVC~sGmgTS~ml~~klkk~~~e-~gi~~~~V 48 (125)
T 1vkr_A 13 VRKIIVACDAGMGSSAMGAGVLRKKIQD-AGLSQISV 48 (125)
T ss_dssp CCEEEECCSSSSHHHHHHHHHHHHHHHH-TTCTTSEE
T ss_pred ccEEEEECCCcHHHHHHHHHHHHHHHHH-CCCceEEE
Confidence 4589999999888887778899999987 576 5444
No 81
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=91.21 E-value=1.3 Score=34.85 Aligned_cols=76 Identities=13% Similarity=0.063 Sum_probs=46.3
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCC-ceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEG-VEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRF 82 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g-~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~ 82 (203)
|||||.+...-.-......+++.+++ .| ++|++.+-.... . +. ....+.|.++|+||+.+. .
T Consensus 6 kvLiv~G~~~H~~~~~~~~l~~~l~~-~g~f~V~~~~d~~~~------------~-d~-~~f~~~L~~~D~vV~~~~--~ 68 (281)
T 4e5v_A 6 KTLLITGQNNHNWQVSHVVLKQILEN-SGRFDVDFVISPEQG------------K-DM-SGFVLDFSPYQLVVLDYN--G 68 (281)
T ss_dssp EEEEEESCCSSCHHHHHHHHHHHHHH-TTSEEEEEEECCCTT------------S-CC-TTCCCCCTTCSEEEECCC--S
T ss_pred EEEEEcCCCCCChHHHHHHHHHHHHh-cCCEEEEEEeCCccc------------c-ch-hHHhhhhhcCCEEEEeCC--C
Confidence 78888665432366777788888877 56 888887643210 0 00 001136889999997552 2
Q ss_pred Cc-cHHHHHHHHHHh
Q 028841 83 GM-MAAQFKAFLDAT 96 (203)
Q Consensus 83 ~~-~~~~~k~~ld~~ 96 (203)
.. .+.+.++|.+.+
T Consensus 69 ~~l~~~~~~~l~~yV 83 (281)
T 4e5v_A 69 DSWPEETNRRFLEYV 83 (281)
T ss_dssp SCCCHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHH
Confidence 33 356666777766
No 82
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=91.08 E-value=0.12 Score=37.91 Aligned_cols=100 Identities=9% Similarity=0.009 Sum_probs=51.0
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCC-CCcHHHhccCCCCCCCCCCCCChhhh--hhcCeeEEe
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE-TLPEEVLGKMSAPPKSDVPIITPNEL--AEADGFVFG 77 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~-~~~~~~~~~~~~~~~~d~~~~~~~~l--~~aD~iiig 77 (203)
|++||+|+.+. |....=+-...+.++. .|++++++.... .... .........|. ..+++ .++|+||+.
T Consensus 4 m~kkv~ill~~--g~~~~e~~~~~~~l~~-ag~~v~~~s~~~~~~v~---~~~g~~i~~d~---~l~~~~~~~~D~livp 74 (190)
T 4e08_A 4 MSKSALVILAP--GAEEMEFIIAADVLRR-AGIKVTVAGLNGGEAVK---CSRDVQILPDT---SLAQVASDKFDVVVLP 74 (190)
T ss_dssp CCCEEEEEECT--TCCHHHHHHHHHHHHH-TTCEEEEEESSSSSCEE---CTTSCEEECSE---ETGGGTTCCCSEEEEC
T ss_pred CCcEEEEEECC--CchHHHHHHHHHHHHH-CCCEEEEEECCCCccee---cCCCcEEECCC---CHHHCCcccCCEEEEC
Confidence 77889988874 3222222334455555 588999988765 2210 00000000111 11222 368999885
Q ss_pred cc---ccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 78 FP---TRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 78 sP---~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
.- .+...-.+.+..||.+.. -.+|+++.++++
T Consensus 75 GG~~~~~~~~~~~~~~~~l~~~~-------~~~k~i~aiC~G 109 (190)
T 4e08_A 75 GGLGGSNAMGESSLVGDLLRSQE-------SGGGLIAAICAA 109 (190)
T ss_dssp CCHHHHHHHHHCHHHHHHHHHHH-------HTTCEEEEETTT
T ss_pred CCChHHHHhhhCHHHHHHHHHHH-------HCCCEEEEECHH
Confidence 32 111122345666666553 367888777663
No 83
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=91.03 E-value=0.11 Score=38.85 Aligned_cols=102 Identities=16% Similarity=0.092 Sum_probs=52.6
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhh--hhhcCeeEEec
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNE--LAEADGFVFGF 78 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~--l~~aD~iiigs 78 (203)
||+||+|+.+...- ..=+-...+.++. .|++++++......+ +..........|. ..++ ..++|.||+..
T Consensus 8 m~~~v~ill~~g~~--~~e~~~~~~~l~~-ag~~v~~vs~~g~~~--v~~~~G~~v~~d~---~l~~~~~~~~D~livpG 79 (208)
T 3ot1_A 8 MSKRILVPVAHGSE--EMETVIIVDTLVR-AGFQVTMAAVGDKLQ--VQGSRGVWLTAEQ---TLEACSAEAFDALALPG 79 (208)
T ss_dssp -CCEEEEEECTTCC--HHHHHHHHHHHHH-TTCEEEEEESSSCSE--EECTTSCEEECSE---EGGGCCGGGCSEEEECC
T ss_pred cCCeEEEEECCCCc--HHHHHHHHHHHHH-CCCEEEEEEcCCCcc--eecCCCcEEeCCC---CHHHCCCcCCCEEEECC
Confidence 57789888765322 2222333455555 588999998753111 1000000001111 1122 35799998843
Q ss_pred c---ccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecC
Q 028841 79 P---TRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTG 117 (203)
Q Consensus 79 P---~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g 117 (203)
- .+...-.+.+..||.+.. -++|+++.++++.
T Consensus 80 G~~~~~~l~~~~~l~~~l~~~~-------~~gk~i~aiC~G~ 114 (208)
T 3ot1_A 80 GVGGAQAFADSTALLALIDAFS-------QQGKLVAAICATP 114 (208)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHH-------HTTCEEEEETTHH
T ss_pred CchHHHHHhhCHHHHHHHHHHH-------HcCCEEEEEChhH
Confidence 2 222223355667776653 3688888887754
No 84
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=90.63 E-value=0.61 Score=34.57 Aligned_cols=43 Identities=9% Similarity=0.016 Sum_probs=25.5
Q ss_pred hhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCC
Q 028841 66 NELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGS 118 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~ 118 (203)
+.+...|.||...... ++. .+++++.+. ....+++..+++.+.
T Consensus 69 ~~~~~~d~vv~~ag~~--n~~--~~~~~~~~~------~~~~~~iv~iSs~~~ 111 (221)
T 3r6d_A 69 QAVTNAEVVFVGAMES--GSD--MASIVKALS------RXNIRRVIGVSMAGL 111 (221)
T ss_dssp HHHTTCSEEEESCCCC--HHH--HHHHHHHHH------HTTCCEEEEEEETTT
T ss_pred HHHcCCCEEEEcCCCC--Chh--HHHHHHHHH------hcCCCeEEEEeecee
Confidence 4567889999887643 222 777777764 122345555555443
No 85
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=90.31 E-value=1.3 Score=33.23 Aligned_cols=88 Identities=11% Similarity=0.047 Sum_probs=42.1
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCC-ceEEEEEcCCCCcHHHhccCCCCCCCCCCC--CChhhhhhcCeeEEec
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEG-VEAKLWQVPETLPEEVLGKMSAPPKSDVPI--ITPNELAEADGFVFGF 78 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g-~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~--~~~~~l~~aD~iiigs 78 (203)
|++|+| .|. |..+...+++.+.+ .| .+|..++-............-....-|+.+ ...+.+...|.||...
T Consensus 23 mk~vlV-tGa----tG~iG~~l~~~L~~-~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a 96 (236)
T 3qvo_A 23 MKNVLI-LGA----GGQIARHVINQLAD-KQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANL 96 (236)
T ss_dssp CEEEEE-ETT----TSHHHHHHHHHHTT-CTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEEC
T ss_pred ccEEEE-EeC----CcHHHHHHHHHHHh-CCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcC
Confidence 444554 444 34566666666666 57 777776643321100000000000112211 1133467889998766
Q ss_pred cccCCccHHHHHHHHHHhc
Q 028841 79 PTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 79 P~y~~~~~~~~k~~ld~~~ 97 (203)
+.. ......+++++.+.
T Consensus 97 ~~~--~~~~~~~~~~~~~~ 113 (236)
T 3qvo_A 97 TGE--DLDIQANSVIAAMK 113 (236)
T ss_dssp CST--THHHHHHHHHHHHH
T ss_pred CCC--chhHHHHHHHHHHH
Confidence 532 23344667777664
No 86
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=90.21 E-value=0.57 Score=36.10 Aligned_cols=107 Identities=10% Similarity=-0.038 Sum_probs=55.4
Q ss_pred CceEEEEEcCC----------cchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHH--hcc---------CCCCCCCCC
Q 028841 2 ATKVYIVYYSM----------YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEV--LGK---------MSAPPKSDV 60 (203)
Q Consensus 2 m~kilii~~S~----------~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~--~~~---------~~~~~~~d~ 60 (203)
|+|||||..|. +|.-..=+-...+.+++ .|++|++..+....+-+. +.. ........+
T Consensus 9 mkkvlvvlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~-aG~~V~~aSp~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~ 87 (247)
T 3n7t_A 9 PRKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTA-AGFEVDVASETGTFGWDEHSLTQEYLSKEDEKVLHSEHNHF 87 (247)
T ss_dssp CSEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHH-TTCEEEEEESSSCCCBCSGGGSGGGCCHHHHHHHTCSSCHH
T ss_pred CCeEEEEECCCCcccCCCCCCCcccHHHHHHHHHHHHH-CCCEEEEEeCCCCcccCcccccccccCHHHHHHHHhhhHHH
Confidence 47999998772 25423223344567777 799999998754321000 000 000000000
Q ss_pred C------CCChh--hhhhcCeeEEecc---ccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 61 P------IITPN--ELAEADGFVFGFP---TRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 61 ~------~~~~~--~l~~aD~iiigsP---~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
. ....+ ...++|+||+.-- .|.......+..|+.+.. -.||+++.+|++
T Consensus 88 ~~~l~~~~~~l~~v~~~~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~~-------~~gk~iaaIC~G 147 (247)
T 3n7t_A 88 MEKMNKQVFKAGDLAPHDYGLMFVCGGHGALYDFPHAKHLQNIAQDIY-------KRGGVIGAVCHG 147 (247)
T ss_dssp HHHHHHCCEEGGGSCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHH-------HTTCEEEEETTG
T ss_pred HHHHhccCCCHHHCChhhCCEEEEeCCCchhhhcccCHHHHHHHHHHH-------HcCCEEEEEChH
Confidence 0 00011 3467999998432 233344566777777763 356777776654
No 87
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=89.78 E-value=0.23 Score=36.94 Aligned_cols=104 Identities=11% Similarity=-0.026 Sum_probs=52.0
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhh--hhcCeeEEec
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNEL--AEADGFVFGF 78 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l--~~aD~iiigs 78 (203)
||+||+|+.+......+ +-...+.++. .|++++++.........+..........+ ...+++ .++|+||+..
T Consensus 1 M~~kV~ill~~g~~~~e--~~~~~~~l~~-ag~~v~~vs~~~~~~~~v~~~~g~~v~~~---~~l~~~~~~~~D~livpG 74 (205)
T 2ab0_A 1 MSASALVCLAPGSEETE--AVTTIDLLVR-GGIKVTTASVASDGNLAITCSRGVKLLAD---APLVEVADGEYDVIVLPG 74 (205)
T ss_dssp -CCEEEEEECTTCCHHH--HHHHHHHHHH-TTCEEEEEECSSTTCCEEECTTSCEEECS---EEHHHHTTSCCSEEEECC
T ss_pred CCcEEEEEEcCCCcHHH--HHHHHHHHHH-CCCEEEEEeCCCCCCceeecCCCeEEecC---CCHHHCCcccCCEEEECC
Confidence 77799988876433222 2223455555 57889888875431000000000000001 112334 5789998864
Q ss_pred cc---cCCccHHHHHHHHHHhcccccccCCCCCceEEEEecC
Q 028841 79 PT---RFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTG 117 (203)
Q Consensus 79 P~---y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g 117 (203)
.. +...-.+.+..||.+.. -.||+++.++++.
T Consensus 75 G~~~~~~l~~~~~l~~~l~~~~-------~~gk~i~aiC~G~ 109 (205)
T 2ab0_A 75 GIKGAECFRDSTLLVETVKQFH-------RSGRIVAAICAAP 109 (205)
T ss_dssp CHHHHHHHHHCHHHHHHHHHHH-------HTTCEEEEETHHH
T ss_pred CcccHHHhccCHHHHHHHHHHH-------HcCCEEEEECHhH
Confidence 32 21112345566666542 3688888877654
No 88
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=89.52 E-value=0.57 Score=36.18 Aligned_cols=54 Identities=17% Similarity=0.322 Sum_probs=37.0
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEe-cc
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFG-FP 79 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiig-sP 79 (203)
++|+||-+....+...+.+.+.+ .|.+++++++...++ . .+++.++|+|||. .|
T Consensus 4 ~~vliiqh~~~e~~~~i~~~l~~-----~G~~v~v~~~~~~~~--------------~----p~~~~~~d~lIl~GGp 58 (250)
T 3m3p_A 4 KPVMIIQFSASEGPGHFGDFLAG-----EHIPFQVLRMDRSDP--------------L----PAEIRDCSGLAMMGGP 58 (250)
T ss_dssp CCEEEEESSSSCCCHHHHHHHHH-----TTCCEEEEEGGGTCC--------------C----CSCGGGSSEEEECCCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-----CCCeEEEEeccCCCc--------------C----cCccccCCEEEECCCC
Confidence 57999988877777777766543 577899888754320 0 2357789988774 55
No 89
>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A
Probab=89.05 E-value=0.26 Score=36.46 Aligned_cols=106 Identities=11% Similarity=-0.092 Sum_probs=49.4
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCC--CCCCC--hhhhhhcCeeEEe
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSD--VPIIT--PNELAEADGFVFG 77 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d--~~~~~--~~~l~~aD~iiig 77 (203)
|+||+|+.+- |..+.=+-...+.+++ .|++++++.+.......+..........| +.+.. .....++|+||+-
T Consensus 4 M~kV~ill~d--Gfe~~E~~~p~~vl~~-ag~~v~~~s~~~~~~~~v~~~~g~~v~~d~~~~~~~~~d~~~~~yD~lvvP 80 (194)
T 4gdh_A 4 MVKVCLFVAD--GTDEIEFSAPWGIFKR-AEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIP 80 (194)
T ss_dssp -CCEEEEEET--TCCHHHHHHHHHHHHH-TTCCEEEEEESSCTTCEEECTTSCEEECSEEGGGSCCHHHHHHHCSEEEEC
T ss_pred CCEEEEEECC--CcCHHHHHHHHHHHHH-CCCeEEEEEEcCCCCceEecCCCceeeccccHhhCCccccccccCCEEEEC
Confidence 4589888764 3322212233455555 58888888775432111111000000111 11111 1235789999984
Q ss_pred --cc-ccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 78 --FP-TRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 78 --sP-~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
.| .+.-.-.+.+..|+.+.. .-.+|+++.++++
T Consensus 81 GG~~~~~~l~~~~~l~~~l~~~~------~~~~k~iaaiC~g 116 (194)
T 4gdh_A 81 GGGLGAKTLSTTPFVQQVVKEFY------KKPNKWIGMICAG 116 (194)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHT------TCTTCEEEEEGGG
T ss_pred CCchhHhHhhhCHHHHHHHHHhh------hcCCceEEeeccc
Confidence 22 222222345666666542 1246777776643
No 90
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}
Probab=88.33 E-value=0.81 Score=34.17 Aligned_cols=101 Identities=9% Similarity=0.034 Sum_probs=52.2
Q ss_pred CceEEEEEcCCcc--hHHHHHHHHH--Hhcc--cCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhh--hcCe
Q 028841 2 ATKVYIVYYSMYG--HVEKLAEEIK--KGAS--SVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELA--EADG 73 (203)
Q Consensus 2 m~kilii~~S~~g--~T~~la~~i~--~~~~--~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~--~aD~ 73 (203)
|+||+|+...... ......+.+. ..+. + .+++++++....... ..........|. ..+++. ++|+
T Consensus 5 m~~v~ill~~g~~~~e~~~~~~~l~~a~~~~~~~-~~~~v~~vs~~~~~v---~~~~G~~i~~d~---~~~~~~~~~~D~ 77 (212)
T 3efe_A 5 TKKAFLYVFNTMSDWEYGYLIAELNSGRYFKKDL-APLKVITVGANKEMI---TTMGGLRIKPDI---SLDECTLESKDL 77 (212)
T ss_dssp CCCEEEEECTTCCTTTTHHHHHHHHHCTTSCTTC-CCCCEEEEESSSCCE---ECTTCCEECCSE---EGGGCCCCTTCE
T ss_pred ccEEEEEECCCccHHHHHHHHHHHHhhhccccCC-CCeEEEEEECCCCeE---EcCCCCEEecCc---CHHHCCccCCCE
Confidence 6889888765321 1222333333 1111 3 478888888754321 110000001111 123333 8999
Q ss_pred eEEe-ccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 74 FVFG-FPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 74 iiig-sP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
||+. .+.+.....+.+..||.+.. -.+|+++.++++
T Consensus 78 livpGG~~~~~~~~~~l~~~l~~~~-------~~gk~iaaiC~G 114 (212)
T 3efe_A 78 LILPGGTTWSEEIHQPILERIGQAL-------KIGTIVAAICGA 114 (212)
T ss_dssp EEECCCSCTTSGGGHHHHHHHHHHH-------HHTCEEEEETHH
T ss_pred EEECCCCccccccCHHHHHHHHHHH-------HCCCEEEEEcHH
Confidence 9883 33344445567777777763 357888777764
No 91
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=87.52 E-value=4.8 Score=30.79 Aligned_cols=93 Identities=16% Similarity=0.121 Sum_probs=58.7
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhh------hhhcCee
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNE------LAEADGF 74 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~------l~~aD~i 74 (203)
||.||-|+-..+-| |..+++.+.+....+.++++.++.-....-++..+. ..+. -.+-|.+
T Consensus 2 mvvKiGiiKlGNig-ts~~idl~LDErAdRedI~vrv~gsGaKm~pe~~~~------------~~~~~~~~~~~~~pDfv 68 (283)
T 1qv9_A 2 TVAKAIFIKCGNLG-TSMMMDMLLDERADREDVEFRVVGTSVKMDPECVEA------------AVEMALDIAEDFEPDFI 68 (283)
T ss_dssp CCEEEEEEECSCCH-HHHHTTGGGSTTSCCSSEEEEEEECTTCCSHHHHHH------------HHHHHHHHHHHHCCSEE
T ss_pred eeEEEEEEEecccc-hHHHHHHHHHhhhccCCceEEEeccCCCCCHHHHHH------------HHHHhhhhhhhcCCCEE
Confidence 45688887666555 557888888777665678888777655432222110 0111 2378999
Q ss_pred EEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 75 VFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 75 iigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
|+.|| |...|++-+.= +.+ .-+|+|+.+++-.
T Consensus 69 I~isP--N~a~PGP~~AR-E~l-------~~~~iP~IvI~D~ 100 (283)
T 1qv9_A 69 VYGGP--NPAAPGPSKAR-EML-------ADSEYPAVIIGDA 100 (283)
T ss_dssp EEECS--CTTSHHHHHHH-HHH-------HTSSSCEEEEEEG
T ss_pred EEECC--CCCCCCchHHH-HHH-------HhCCCCEEEEcCC
Confidence 99999 67788875542 111 1378998877654
No 92
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=87.15 E-value=0.65 Score=34.14 Aligned_cols=101 Identities=9% Similarity=-0.041 Sum_probs=50.2
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhh---hhcCeeEEe
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNEL---AEADGFVFG 77 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l---~~aD~iiig 77 (203)
||+||+|+.+......+ +-...+.++. .|++++++......+ +.....-.... +...+++ .++|+||+.
T Consensus 2 m~~~v~ill~~g~~~~e--~~~~~~~l~~-ag~~v~~vs~~~~~~--v~~~~g~~v~~---d~~l~~~~~~~~~D~livp 73 (197)
T 2rk3_A 2 ASKRALVILAKGAEEME--TVIPVDVMRR-AGIKVTVAGLAGKDP--VQCSRDVVICP---DASLEDAKKEGPYDVVVLP 73 (197)
T ss_dssp CCCEEEEEECTTCCHHH--HHHHHHHHHH-TTCEEEEEETTCSSC--EECTTSCEECC---SEEHHHHHTTCCCSEEEEC
T ss_pred CCCEEEEEECCCCcHHH--HHHHHHHHHH-CCCEEEEEEcCCCCc--cccCCCCEEeC---CcCHHHcCCccCCCEEEEC
Confidence 34688888764332222 2234455555 578888888654211 00000000011 1113445 788999886
Q ss_pred ccc---cCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 78 FPT---RFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 78 sP~---y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
-.. +...-.+.+..||.+.. -++|+++.++++
T Consensus 74 GG~~~~~~l~~~~~~~~~l~~~~-------~~gk~i~aiC~G 108 (197)
T 2rk3_A 74 GGNLGAQNLSESAAVKEILKEQE-------NRKGLIATICAG 108 (197)
T ss_dssp CCHHHHHHHHHCHHHHHHHHHHH-------HTTCEEEEETTT
T ss_pred CCchhHHHhhhCHHHHHHHHHHH-------HcCCEEEEECHH
Confidence 432 11111244555665542 367888777764
No 93
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6
Probab=87.08 E-value=3.1 Score=32.56 Aligned_cols=67 Identities=18% Similarity=0.166 Sum_probs=41.6
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
||+||.||=+. | .|...++..+.+ .|.+|.+++..... ...+.+.++|.||++.|.
T Consensus 20 ~~~~I~iIGg~--G---~mG~~la~~l~~-~G~~V~~~~~~~~~------------------~~~~~~~~aDvVilavp~ 75 (298)
T 2pv7_A 20 DIHKIVIVGGY--G---KLGGLFARYLRA-SGYPISILDREDWA------------------VAESILANADVVIVSVPI 75 (298)
T ss_dssp TCCCEEEETTT--S---HHHHHHHHHHHT-TTCCEEEECTTCGG------------------GHHHHHTTCSEEEECSCG
T ss_pred CCCEEEEEcCC--C---HHHHHHHHHHHh-CCCeEEEEECCccc------------------CHHHHhcCCCEEEEeCCH
Confidence 45577775213 2 355555666666 68888888743310 013457899999999998
Q ss_pred cCCccHHHHHHHHHHhc
Q 028841 81 RFGMMAAQFKAFLDATG 97 (203)
Q Consensus 81 y~~~~~~~~k~~ld~~~ 97 (203)
.. +..+++.+.
T Consensus 76 ~~------~~~vl~~l~ 86 (298)
T 2pv7_A 76 NL------TLETIERLK 86 (298)
T ss_dssp GG------HHHHHHHHG
T ss_pred HH------HHHHHHHHH
Confidence 75 555566553
No 94
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=86.71 E-value=3.5 Score=31.69 Aligned_cols=60 Identities=13% Similarity=0.016 Sum_probs=35.3
Q ss_pred HHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCCcc-HHHHHHHHHHh
Q 028841 20 AEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMM-AAQFKAFLDAT 96 (203)
Q Consensus 20 a~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~~~-~~~~k~~ld~~ 96 (203)
...|++.+++ .|++|+...+.+... . ...+.|.++|+||+-.-.-.+.+ +.+.+.|.+.+
T Consensus 34 ~~~i~~~L~~-~gf~V~~~t~dd~~~--~--------------~~~~~L~~~DvvV~~~~~~~~~l~~~~~~al~~~V 94 (252)
T 1t0b_A 34 HTVIASYLAE-AGFDAATAVLDEPEH--G--------------LTDEVLDRCDVLVWWGHIAHDEVKDEVVERVHRRV 94 (252)
T ss_dssp HHHHHHHHHH-TTCEEEEEESSSGGG--G--------------CCHHHHHTCSEEEEECSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHhh-CCcEEEEEeccCccc--c--------------CCHhHHhcCCEEEEecCCCCCcCCHHHHHHHHHHH
Confidence 4455777777 789999877544210 0 01457999999998321122223 45555665655
No 95
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=86.32 E-value=1.7 Score=33.04 Aligned_cols=42 Identities=7% Similarity=-0.139 Sum_probs=26.3
Q ss_pred hhhcCeeEEecc---ccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 68 LAEADGFVFGFP---TRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 68 l~~aD~iiigsP---~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..++|+||+.-- .|...-.+.+..|+.+.. -+||+++.+|++
T Consensus 96 ~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~-------~~gk~vaaIC~G 140 (243)
T 1rw7_A 96 ADDYQIFFASAGHGTLFDYPKAKDLQDIASEIY-------ANGGVVAAVCHG 140 (243)
T ss_dssp GGGEEEEEECCSTTHHHHGGGCHHHHHHHHHHH-------HTTCEEEEETTG
T ss_pred HhhCcEEEECCCCCchhhcccCHHHHHHHHHHH-------HcCCEEEEECCC
Confidence 457899988632 333333456777777653 357777777764
No 96
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=86.15 E-value=1.3 Score=33.07 Aligned_cols=23 Identities=13% Similarity=0.036 Sum_probs=16.0
Q ss_pred hhhhhcCeeEEeccccCCccHHHHHHH
Q 028841 66 NELAEADGFVFGFPTRFGMMAAQFKAF 92 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~~k~~ 92 (203)
+.+.++|+|+++- |+....++.+
T Consensus 75 ~~l~~ad~I~l~G----G~~~~l~~~L 97 (206)
T 3l4e_A 75 TKLRKNDFIYVTG----GNTFFLLQEL 97 (206)
T ss_dssp HHHHHSSEEEECC----SCHHHHHHHH
T ss_pred HHHHhCCEEEECC----CCHHHHHHHH
Confidence 5789999999853 5555555444
No 97
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=85.13 E-value=1.6 Score=32.05 Aligned_cols=48 Identities=25% Similarity=0.321 Sum_probs=29.1
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEec
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGF 78 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigs 78 (203)
||+||+||-. ..+|...+.+.+.+ .|.++.+++.. +.+.++|+||+.-
T Consensus 1 M~~~I~iid~-~~~~~~~~~~~l~~-----~G~~~~~~~~~------------------------~~l~~~d~lil~G 48 (200)
T 1ka9_H 1 MRMKALLIDY-GSGNLRSAAKALEA-----AGFSVAVAQDP------------------------KAHEEADLLVLPG 48 (200)
T ss_dssp --CEEEEECS-SCSCHHHHHHHHHH-----TTCEEEEESST------------------------TSCSSCSEEEECC
T ss_pred CccEEEEEeC-CCccHHHHHHHHHH-----CCCeEEEecCh------------------------HHcccCCEEEECC
Confidence 6668988833 34576666555543 47777776421 1356799999954
No 98
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=84.97 E-value=1.9 Score=33.05 Aligned_cols=86 Identities=13% Similarity=0.038 Sum_probs=44.8
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
||+||+|. |+ | .+...+.+.+.+ .|.+|..++-............-....-|+.+ .+ +..+|.||...+.
T Consensus 4 m~~~ilVt-Ga--G---~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d--~~-~~~~d~vi~~a~~ 73 (286)
T 3ius_A 4 MTGTLLSF-GH--G---YTARVLSRALAP-QGWRIIGTSRNPDQMEAIRASGAEPLLWPGEE--PS-LDGVTHLLISTAP 73 (286)
T ss_dssp -CCEEEEE-TC--C---HHHHHHHHHHGG-GTCEEEEEESCGGGHHHHHHTTEEEEESSSSC--CC-CTTCCEEEECCCC
T ss_pred CcCcEEEE-CC--c---HHHHHHHHHHHH-CCCEEEEEEcChhhhhhHhhCCCeEEEecccc--cc-cCCCCEEEECCCc
Confidence 66677764 53 4 355556666655 57788877654322111111000000112211 12 6789999998876
Q ss_pred cCCccHHHHHHHHHHhc
Q 028841 81 RFGMMAAQFKAFLDATG 97 (203)
Q Consensus 81 y~~~~~~~~k~~ld~~~ 97 (203)
.....+ ..+++++.+.
T Consensus 74 ~~~~~~-~~~~l~~a~~ 89 (286)
T 3ius_A 74 DSGGDP-VLAALGDQIA 89 (286)
T ss_dssp BTTBCH-HHHHHHHHHH
T ss_pred cccccH-HHHHHHHHHH
Confidence 554433 4577777764
No 99
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=84.29 E-value=5.9 Score=28.57 Aligned_cols=34 Identities=21% Similarity=0.225 Sum_probs=21.3
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
|| |+||-.- .+|+..+++.+.+ .|.++.++....
T Consensus 1 mm--i~iid~~-~~~~~~~~~~l~~-----~G~~~~~~~~~~ 34 (189)
T 1wl8_A 1 MM--IVIMDNG-GQYVHRIWRTLRY-----LGVETKIIPNTT 34 (189)
T ss_dssp CE--EEEEECS-CTTHHHHHHHHHH-----TTCEEEEEETTC
T ss_pred Ce--EEEEECC-CchHHHHHHHHHH-----CCCeEEEEECCC
Confidence 65 7777433 3457766666654 477888877543
No 100
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=84.28 E-value=3.3 Score=36.67 Aligned_cols=93 Identities=15% Similarity=-0.011 Sum_probs=62.1
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccC
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRF 82 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~ 82 (203)
+||+|+.....|..+.-+..+.+.+++ .|++++++...... ..+..+. ...-.++|+|||.--...
T Consensus 530 ~kVaIL~a~~dGfe~~E~~~~~~~L~~-aG~~V~vVs~~~g~----------~vD~t~~---~~~s~~fDAVvlPGG~~g 595 (688)
T 2iuf_A 530 LKVGLLASVNKPASIAQGAKLQVALSS-VGVDVVVVAERXAN----------NVDETYS---ASDAVQFDAVVVADGAEG 595 (688)
T ss_dssp CEEEEECCTTCHHHHHHHHHHHHHHGG-GTCEEEEEESSCCT----------TCCEEST---TCCGGGCSEEEECTTCGG
T ss_pred CEEEEEecCCCCCcHHHHHHHHHHHHH-CCCEEEEEeccCCc----------ccccchh---cCCccccCeEEecCCCcc
Confidence 578887766688888888999999999 79999999875321 0000111 113568999998755332
Q ss_pred -------------------CccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 83 -------------------GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 83 -------------------~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
-...+....|+.... -.||+++.+|.+
T Consensus 596 ~~~~~~~~~~~~~~~~~~~L~~~~~~~~~v~~~~-------~~gKpIaAIc~a 641 (688)
T 2iuf_A 596 LFGADSFTVEPSAGSGASTLYPAGRPLNILLDAF-------RFGKTVGALGSG 641 (688)
T ss_dssp GCCTTTTTCCCCTTSCCCSSSCTTHHHHHHHHHH-------HHTCEEEEEGGG
T ss_pred cccccccccccccccchhhcccChHHHHHHHHHH-------HcCCEEEEECch
Confidence 223455666766653 368999988764
No 101
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=83.65 E-value=0.99 Score=33.63 Aligned_cols=97 Identities=11% Similarity=-0.021 Sum_probs=49.8
Q ss_pred CCceEEEEEcCCcchHH--HHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhh-hhcCeeEEe
Q 028841 1 MATKVYIVYYSMYGHVE--KLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNEL-AEADGFVFG 77 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~--~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l-~~aD~iiig 77 (203)
||+||+|+.+......+ ..++. +.+..+++++++..... . ..........|.. .+++ .++|.||+.
T Consensus 2 ~m~kV~ill~~g~~~~E~~~~~~~----l~~~~~~~v~~vs~~~~-V---~~~~G~~v~~d~~---l~~~~~~~D~livp 70 (206)
T 3f5d_A 2 SLKKALFLILDQYADWEGVYLASA----LNQREDWSVHTVSLDPI-V---SSIGGFKTSVDYI---IGLEPANFNLLVMI 70 (206)
T ss_dssp -CEEEEEECCSSBCTTTSHHHHHH----HHTSTTEEEEEEESSSE-E---EBTTSCEEECSEE---TTSSCSCCSEEEEC
T ss_pred CccEEEEEEcCCCcHHHHHHHHHH----HhccCCeEEEEEECCCC-E---EecCCcEEecCcC---hhhCCcCCCEEEEc
Confidence 36788888664322111 23333 33313788888876542 1 1111100011110 1122 478999884
Q ss_pred -ccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 78 -FPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 78 -sP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
.+-+.. ..+.+..||.+.. -++|+++.++++
T Consensus 71 GG~~~~~-~~~~l~~~l~~~~-------~~gk~iaaiC~G 102 (206)
T 3f5d_A 71 GGDSWSN-DNKKLLHFVKTAF-------QKNIPIAAICGA 102 (206)
T ss_dssp CBSCCCC-CCHHHHHHHHHHH-------HTTCCEEEETHH
T ss_pred CCCChhh-cCHHHHHHHHHHH-------HcCCEEEEECHH
Confidence 322223 5567778887763 368888888774
No 102
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=83.13 E-value=1.3 Score=33.57 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=17.6
Q ss_pred hhhhhhcCeeEEeccccCCccHHHHHHHH
Q 028841 65 PNELAEADGFVFGFPTRFGMMAAQFKAFL 93 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~~k~~l 93 (203)
.+.+.++|+|++.- |+....++.+-
T Consensus 74 ~~~l~~ad~I~lpG----G~~~~~~~~l~ 98 (229)
T 1fy2_A 74 LAAIEKAEIIIVGG----GNTFQLLKESR 98 (229)
T ss_dssp HHHHHHCSEEEECC----SCHHHHHHHHH
T ss_pred HHHHhcCCEEEECC----CcHHHHHHHHH
Confidence 37899999999875 56555555543
No 103
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=82.74 E-value=2.2 Score=32.23 Aligned_cols=40 Identities=15% Similarity=0.059 Sum_probs=24.2
Q ss_pred CceEEEEEcCC---cchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 2 ATKVYIVYYSM---YGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 2 m~kilii~~S~---~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
|+||+|+.+|. .|....=+-...+.++. .|++++++....
T Consensus 6 m~kv~ill~~~~~~~g~~~~E~~~p~~~l~~-ag~~v~~~s~~g 48 (232)
T 1vhq_A 6 MKKIGVILSGCGVYDGSEIHEAVLTLLAISR-SGAQAVCFAPDK 48 (232)
T ss_dssp CCEEEEECCSBSTTTSBCHHHHHHHHHHHHH-TTCEEEEEECSS
T ss_pred CCeEEEEEccCCCCCCeeHHHHHHHHHHHHH-CCCEEEEEecCC
Confidence 67899987752 34322222233455655 588999988754
No 104
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=82.34 E-value=3.5 Score=32.93 Aligned_cols=40 Identities=13% Similarity=0.199 Sum_probs=28.5
Q ss_pred CCceEEEEEcCC--cchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 1 MATKVYIVYYSM--YGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 1 Mm~kilii~~S~--~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
||+|++||+-.. .|...++.+.+.+.+++ .|+++++..-.
T Consensus 23 ~m~~i~vI~NP~sg~~~~~~~~~~i~~~L~~-~g~~~~~~~t~ 64 (337)
T 2qv7_A 23 MRKRARIIYNPTSGKEQFKRELPDALIKLEK-AGYETSAYATE 64 (337)
T ss_dssp CCEEEEEEECTTSTTSCHHHHHHHHHHHHHH-TTEEEEEEECC
T ss_pred ccceEEEEECCCCCCCchHHHHHHHHHHHHH-cCCeEEEEEec
Confidence 356788777543 44567788889999988 68888776543
No 105
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=81.90 E-value=2.2 Score=31.73 Aligned_cols=49 Identities=24% Similarity=0.313 Sum_probs=29.5
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEe
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFG 77 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiig 77 (203)
|| ||+++..- .+++..+++.+.+ .|.++.++.... . .+.+.++|+|||.
T Consensus 13 ~~-~i~~id~~-~~~~~~~~~~l~~-----~G~~~~vv~~~~-~--------------------~~~l~~~DglIl~ 61 (212)
T 2a9v_A 13 ML-KIYVVDNG-GQWTHREWRVLRE-----LGVDTKIVPNDI-D--------------------SSELDGLDGLVLS 61 (212)
T ss_dssp CC-BEEEEEES-CCTTCHHHHHHHH-----TTCBCCEEETTS-C--------------------GGGGTTCSEEEEE
T ss_pred cc-eEEEEeCC-CccHHHHHHHHHH-----CCCEEEEEeCCC-C--------------------HHHHhCCCEEEEC
Confidence 44 88887532 2335556666654 356777776532 1 2356679999874
No 106
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=81.60 E-value=1.4 Score=32.99 Aligned_cols=78 Identities=13% Similarity=0.170 Sum_probs=40.0
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEE-EEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKL-WQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~-~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
|+||.||= .| .+...++..+.+ .|.++.+ .+................... ...+.+.++|.||+++|
T Consensus 23 mmkI~IIG---~G---~mG~~la~~l~~-~g~~V~~v~~r~~~~~~~l~~~~g~~~~~----~~~~~~~~aDvVilavp- 90 (220)
T 4huj_A 23 MTTYAIIG---AG---AIGSALAERFTA-AQIPAIIANSRGPASLSSVTDRFGASVKA----VELKDALQADVVILAVP- 90 (220)
T ss_dssp SCCEEEEE---CH---HHHHHHHHHHHH-TTCCEEEECTTCGGGGHHHHHHHTTTEEE----CCHHHHTTSSEEEEESC-
T ss_pred CCEEEEEC---CC---HHHHHHHHHHHh-CCCEEEEEECCCHHHHHHHHHHhCCCccc----ChHHHHhcCCEEEEeCC-
Confidence 45777753 23 244455555555 5777776 443322222211110100000 12456889999999998
Q ss_pred cCCccHHHHHHHHHHh
Q 028841 81 RFGMMAAQFKAFLDAT 96 (203)
Q Consensus 81 y~~~~~~~~k~~ld~~ 96 (203)
|..+...++.+
T Consensus 91 -----~~~~~~v~~~l 101 (220)
T 4huj_A 91 -----YDSIADIVTQV 101 (220)
T ss_dssp -----GGGHHHHHTTC
T ss_pred -----hHHHHHHHHHh
Confidence 34456666655
No 107
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=81.25 E-value=4 Score=29.67 Aligned_cols=100 Identities=10% Similarity=0.035 Sum_probs=49.3
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFG 83 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~ 83 (203)
||+| .|. |-.+...+.+.+.+ .|.+|..++-............ ....-|+.+...+.+...|.||........
T Consensus 2 kvlV-tGa----tG~iG~~l~~~L~~-~g~~V~~~~R~~~~~~~~~~~~-~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~ 74 (221)
T 3ew7_A 2 KIGI-IGA----TGRAGSRILEEAKN-RGHEVTAIVRNAGKITQTHKDI-NILQKDIFDLTLSDLSDQNVVVDAYGISPD 74 (221)
T ss_dssp EEEE-ETT----TSHHHHHHHHHHHH-TTCEEEEEESCSHHHHHHCSSS-EEEECCGGGCCHHHHTTCSEEEECCCSSTT
T ss_pred eEEE-EcC----CchhHHHHHHHHHh-CCCEEEEEEcCchhhhhccCCC-eEEeccccChhhhhhcCCCEEEECCcCCcc
Confidence 7766 332 33445555555555 5778887765432111110000 000112211112577889999988766433
Q ss_pred cc---HHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 84 MM---AAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 84 ~~---~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
.. ....+++++.+. ....+++..+++.
T Consensus 75 ~~~~~~~~~~~l~~a~~------~~~~~~~v~~SS~ 104 (221)
T 3ew7_A 75 EAEKHVTSLDHLISVLN------GTVSPRLLVVGGA 104 (221)
T ss_dssp TTTSHHHHHHHHHHHHC------SCCSSEEEEECCC
T ss_pred ccchHHHHHHHHHHHHH------hcCCceEEEEecc
Confidence 22 244567777764 2234555555543
No 108
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=81.04 E-value=4.2 Score=30.69 Aligned_cols=51 Identities=8% Similarity=0.150 Sum_probs=33.3
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEe
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFG 77 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiig 77 (203)
||++|.+....+-..+.+.+.+ .|++++++++.... .+ .+++.++|+||+.
T Consensus 2 ~i~vi~h~~~e~~g~~~~~l~~-----~g~~~~~~~~~~~~--------------~~----p~~~~~~d~lii~ 52 (236)
T 3l7n_A 2 RIHFILHETFEAPGAYLAWAAL-----RGHDVSMTKVYRYE--------------KL----PKDIDDFDMLILM 52 (236)
T ss_dssp EEEEEECCTTSCCHHHHHHHHH-----TTCEEEEEEGGGTC--------------CC----CSCGGGCSEEEEC
T ss_pred eEEEEeCCCCCCchHHHHHHHH-----CCCeEEEEeeeCCC--------------CC----CCCccccCEEEEC
Confidence 8999998765444445555433 47899999885432 01 1247789998776
No 109
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=80.83 E-value=5.1 Score=31.43 Aligned_cols=42 Identities=7% Similarity=-0.269 Sum_probs=26.1
Q ss_pred hhhcCeeEEec---cccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 68 LAEADGFVFGF---PTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 68 l~~aD~iiigs---P~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..++|+|||.- +.|...-.+.+..||.+.. -+||+++.+|++
T Consensus 143 ~~~yD~livPGG~g~~~~l~~~~~l~~~l~~~~-------~~gk~VaaIC~G 187 (291)
T 1n57_A 143 DSEYAAIFVPGGHGALIGLPESQDVAAALQWAI-------KNDRFVISLCHG 187 (291)
T ss_dssp TCSEEEEEECCSGGGGSSGGGCHHHHHHHHHHH-------HTTCEEEEETTG
T ss_pred cccCCEEEecCCcchhhhhhhCHHHHHHHHHHH-------HcCCEEEEECcc
Confidence 46789998864 2333333467777877763 256666666654
No 110
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=79.77 E-value=2.6 Score=30.74 Aligned_cols=100 Identities=16% Similarity=0.111 Sum_probs=47.8
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCC-CCCCCCCCCChh--hhhhcCeeEEe
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSA-PPKSDVPIITPN--ELAEADGFVFG 77 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~-~~~~d~~~~~~~--~l~~aD~iiig 77 (203)
||+||+|+.+......+ +-...+.++. .|++++++......+ +...... ....+. ..+ ...++|+||+.
T Consensus 22 ~~~kV~ill~~g~~~~e--~~~~~~~l~~-ag~~v~~vs~~~~~~--v~~~~g~~~v~~~~---~l~~~~~~~~D~livp 93 (193)
T 1oi4_A 22 LSKKIAVLITDEFEDSE--FTSPADEFRK-AGHEVITIEKQAGKT--VKGKKGEASVTIDK---SIDEVTPAEFDALLLP 93 (193)
T ss_dssp CCCEEEEECCTTBCTHH--HHHHHHHHHH-TTCEEEEEESSTTCE--EECTTSSCEEECCE---EGGGCCGGGCSEEEEC
T ss_pred cCCEEEEEECCCCCHHH--HHHHHHHHHH-CCCEEEEEECCCCcc--eecCCCCeEEECCC---ChHHCCcccCCEEEEC
Confidence 35688888764322222 2223344444 578888888764320 0000000 000010 112 23678999886
Q ss_pred ccccC-Cc--cHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 78 FPTRF-GM--MAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 78 sP~y~-~~--~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
-. +. .. -.+.+..||.+.. -.+|+++.++++
T Consensus 94 GG-~~~~~l~~~~~l~~~l~~~~-------~~gk~i~aIC~G 127 (193)
T 1oi4_A 94 GG-HSPDYLRGDNRFVTFTRDFV-------NSGKPVFAICHG 127 (193)
T ss_dssp CB-THHHHHTTSHHHHHHHHHHH-------HTTCCEEEETTT
T ss_pred CC-cCHHHhhhCHHHHHHHHHHH-------HcCCEEEEECHH
Confidence 43 21 11 1244555665542 357777777654
No 111
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=79.24 E-value=3.4 Score=29.94 Aligned_cols=99 Identities=16% Similarity=-0.034 Sum_probs=49.2
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChh--hhhhcCeeEEec--
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPN--ELAEADGFVFGF-- 78 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~--~l~~aD~iiigs-- 78 (203)
+|+++|..+ .|..+.=+-...+.+++ .|++++++....... ..........|. ..+ ...++|+||+--
T Consensus 8 ~~~v~il~~-~gFe~~E~~~p~~~l~~-ag~~V~~~s~~~~~v---~~~~G~~v~~d~---~l~~v~~~~yD~liiPGG~ 79 (177)
T 4hcj_A 8 NNILYVMSG-QNFQDEEYFESKKIFES-AGYKTKVSSTFIGTA---QGKLGGMTNIDL---LFSEVDAVEFDAVVFVGGI 79 (177)
T ss_dssp CEEEEECCS-EEECHHHHHHHHHHHHH-TTCEEEEEESSSEEE---EETTSCEEEECE---EGGGCCGGGCSEEEECCSG
T ss_pred CCEEEEECC-CCccHHHHHHHHHHHHH-CCCEEEEEECCCCeE---eeCCCCEEecCc---cHHHCCHhHCCEEEECCCc
Confidence 455555443 34322212334566666 699999988754321 110000001111 011 356899998842
Q ss_pred cccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 79 PTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 79 P~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
......-.+.+..|+.+.. -++|+++.+|++
T Consensus 80 g~~~l~~~~~~~~~l~~~~-------~~~k~iaaIC~g 110 (177)
T 4hcj_A 80 GCITLWDDWRTQGLAKLFL-------DNQKIVAGIGSG 110 (177)
T ss_dssp GGGGGTTCHHHHHHHHHHH-------HTTCEEEEETTH
T ss_pred cHHHHhhCHHHHHHHHHHH-------HhCCEEEEeccc
Confidence 1112222356677777653 357777777654
No 112
>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A
Probab=79.17 E-value=1.8 Score=32.79 Aligned_cols=88 Identities=11% Similarity=-0.014 Sum_probs=41.9
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecc-
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFP- 79 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP- 79 (203)
||+||.|+.+...- ..=+-...+.++...+++++++....... .....-....|. ..+++.++|.||+..-
T Consensus 4 m~~~V~ill~~gf~--~~e~~~p~evl~~~~~~~v~~vs~~~~~V---~~~~G~~v~~d~---~l~~~~~~D~livpGG~ 75 (231)
T 3noq_A 4 MAVQIGFLLFPEVQ--QLDLTGPHDVLASLPDVQVHLIWKEPGPV---VASSGLVLQATT---SFADCPPLDVICIPGGT 75 (231)
T ss_dssp CCEEEEEECCTTCC--HHHHHHHHHHHTTSTTEEEEEEESSSEEE---ECTTSCEEEECE---ETTTCCCCSEEEECCST
T ss_pred CcEEEEEEEeCCCc--HHHHHHHHHHHHcCCCCEEEEEECCCCcE---EcCCCCEEeccc---ChhHCCcCCEEEECCCC
Confidence 77788888765322 22222233444443577888887643211 100000000011 1223457999988532
Q ss_pred c-cCCccHHHHHHHHHHh
Q 028841 80 T-RFGMMAAQFKAFLDAT 96 (203)
Q Consensus 80 ~-y~~~~~~~~k~~ld~~ 96 (203)
- ....-.+.+..||.+.
T Consensus 76 g~~~~~~~~~l~~~lr~~ 93 (231)
T 3noq_A 76 GVGALMEDPQALAFIRQQ 93 (231)
T ss_dssp THHHHTTCHHHHHHHHHH
T ss_pred ChhhhccCHHHHHHHHHH
Confidence 1 1112235667777665
No 113
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=79.06 E-value=3 Score=32.04 Aligned_cols=14 Identities=29% Similarity=0.188 Sum_probs=11.9
Q ss_pred hhhhhhcCeeEEec
Q 028841 65 PNELAEADGFVFGF 78 (203)
Q Consensus 65 ~~~l~~aD~iiigs 78 (203)
.+.+.++|+||+.-
T Consensus 72 ~~~L~~yDvIIl~~ 85 (256)
T 2gk3_A 72 IDELNRYDVIVISD 85 (256)
T ss_dssp HHHHHTCSEEEEES
T ss_pred hhHHhcCCEEEEeC
Confidence 46899999999984
No 114
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=79.01 E-value=17 Score=28.06 Aligned_cols=73 Identities=18% Similarity=0.125 Sum_probs=34.7
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCC-CCChhhhhhcCeeEEecc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVP-IITPNELAEADGFVFGFP 79 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~-~~~~~~l~~aD~iiigsP 79 (203)
||++|+|. |-|-.+...+.+.+.+ .|.+|..++-...... +... .....|+. +...+.+...|.||....
T Consensus 1 M~~~vlVt-----GatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~--~~~~-~~~~~Dl~~~~~~~~~~~~d~Vih~a~ 71 (311)
T 3m2p_A 1 MSLKIAVT-----GGTGFLGQYVVESIKN-DGNTPIILTRSIGNKA--INDY-EYRVSDYTLEDLINQLNDVDAVVHLAA 71 (311)
T ss_dssp -CCEEEEE-----TTTSHHHHHHHHHHHH-TTCEEEEEESCCC-------CC-EEEECCCCHHHHHHHTTTCSEEEECCC
T ss_pred CCCEEEEE-----CCCcHHHHHHHHHHHh-CCCEEEEEeCCCCccc--CCce-EEEEccccHHHHHHhhcCCCEEEEccc
Confidence 77677773 3333455555555555 5778877765521111 1100 00011221 111345568899998765
Q ss_pred ccC
Q 028841 80 TRF 82 (203)
Q Consensus 80 ~y~ 82 (203)
...
T Consensus 72 ~~~ 74 (311)
T 3m2p_A 72 TRG 74 (311)
T ss_dssp CCC
T ss_pred cCC
Confidence 443
No 115
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=78.59 E-value=7.1 Score=30.62 Aligned_cols=42 Identities=14% Similarity=0.163 Sum_probs=29.2
Q ss_pred CCceEEEEEcCCcc---hHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 1 MATKVYIVYYSMYG---HVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 1 Mm~kilii~~S~~g---~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
|++||+|+++.... -+-.=++.+.+.+++ .|+++..++..+.
T Consensus 12 ~~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~-~g~~v~~i~~~~~ 56 (317)
T 4eg0_A 12 RFGKVAVLFGGESAEREVSLTSGRLVLQGLRD-AGIDAHPFDPAER 56 (317)
T ss_dssp GGCEEEEECCCSSTTHHHHHHHHHHHHHHHHH-TTCEEEEECTTTS
T ss_pred hcceEEEEECCCCCcceeeHHHHHHHHHHHHH-CCCEEEEEeCCCc
Confidence 45689999986543 222346777777877 7999999985443
No 116
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=78.34 E-value=2.2 Score=34.98 Aligned_cols=38 Identities=8% Similarity=-0.110 Sum_probs=23.8
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
|+||+|+.+- |....=+-...+.+++ .|++++++....
T Consensus 12 ~~kv~ill~d--g~e~~E~~~~~~~l~~-ag~~v~~vs~~~ 49 (396)
T 3uk7_A 12 SRTVLILCGD--YMEDYEVMVPFQALQA-FGITVHTVCPGK 49 (396)
T ss_dssp CCEEEEECCT--TEEHHHHHHHHHHHHH-TTCEEEEECTTC
T ss_pred CCeEEEEeCC--CccHHHHHHHHHHHHH-CCCEEEEEcCCC
Confidence 4688887753 4333323444566666 688999888754
No 117
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=78.18 E-value=2.4 Score=34.60 Aligned_cols=101 Identities=17% Similarity=0.027 Sum_probs=49.1
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCC-CCCCCCCCCChhh--hhhcCeeEEe
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSA-PPKSDVPIITPNE--LAEADGFVFG 77 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~-~~~~d~~~~~~~~--l~~aD~iiig 77 (203)
||+||+|+.+... ...=+-...+.++. .|++++++....... +...... ....|. ..+. ..++|+||+.
T Consensus 9 ~mkkV~ILl~dgf--~~~El~~p~dvL~~-Ag~~v~vvS~~~g~~--V~ss~G~~~i~~d~---~l~~v~~~~~DaLiVP 80 (365)
T 3fse_A 9 GKKKVAILIEQAV--EDTEFIIPCNGLKQ-AGFEVVVLGSRMNEK--YKGKRGRLSTQADG---TTTEAIASEFDAVVIP 80 (365)
T ss_dssp --CEEEEECCTTB--CHHHHHHHHHHHHH-TTCEEEEEESSSSCC--EECTTSCCEECCSE---ETTTCCGGGCSEEEEC
T ss_pred CceEEEEEECCCC--cHHHHHHHHHHHHH-CCCEEEEEECCCCce--eecCCCceEEeCCC---CHhhCCCcCCCEEEEE
Confidence 4678888876532 22222333455555 588999988764320 0110001 111111 0112 3478999884
Q ss_pred ccc-c-CCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 78 FPT-R-FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 78 sP~-y-~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
... . .....+.+..|+.+.. -.||+++.+|++
T Consensus 81 GG~g~~~l~~~~~l~~~Lr~~~-------~~gk~IaAIC~G 114 (365)
T 3fse_A 81 GGMAPDKMRRNPNTVRFVQEAM-------EQGKLVAAVCHG 114 (365)
T ss_dssp CBTHHHHHTTCHHHHHHHHHHH-------HTTCEEEEETTT
T ss_pred CCcchhhccCCHHHHHHHHHHH-------HCCCEEEEECHH
Confidence 321 1 1122345666666653 357777777654
No 118
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=77.27 E-value=2.8 Score=32.90 Aligned_cols=39 Identities=26% Similarity=0.326 Sum_probs=30.4
Q ss_pred ceEEEEEcC---------------CcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 3 TKVYIVYYS---------------MYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 3 ~kilii~~S---------------~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
+||+++..+ ..|-.+..+..+++.+.+ .|++|.++....
T Consensus 4 mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~-~G~~v~v~~~~~ 57 (342)
T 2iuy_A 4 LKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLE-LGHEVFLLGAPG 57 (342)
T ss_dssp CEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHH-TTCEEEEESCTT
T ss_pred cEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHH-cCCeEEEEecCC
Confidence 499999876 246677778888888888 699999887654
No 119
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=76.60 E-value=5 Score=29.28 Aligned_cols=100 Identities=14% Similarity=0.099 Sum_probs=46.8
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFG 83 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~ 83 (203)
||+| .| -|-.+...+++.+.+ .|.+|..+.-............-....-|+.+...+.+...|.||......|.
T Consensus 2 kilV-tG----atG~iG~~l~~~L~~-~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~ 75 (224)
T 3h2s_A 2 KIAV-LG----ATGRAGSAIVAEARR-RGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALSVPWG 75 (224)
T ss_dssp EEEE-ET----TTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCCCTT
T ss_pred EEEE-Ec----CCCHHHHHHHHHHHH-CCCEEEEEEecccccccccCCCceEEecccccccHhhcccCCEEEECCccCCC
Confidence 6666 33 333455555555555 57788877653221111111000000112211112567889999987765422
Q ss_pred -c----cHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 84 -M----MAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 84 -~----~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
. -....+++++.+. -.|+++..+++.
T Consensus 76 ~~~~~~n~~~~~~l~~a~~-------~~~~~~v~~SS~ 106 (224)
T 3h2s_A 76 SGRGYLHLDFATHLVSLLR-------NSDTLAVFILGS 106 (224)
T ss_dssp SSCTHHHHHHHHHHHHTCT-------TCCCEEEEECCG
T ss_pred cchhhHHHHHHHHHHHHHH-------HcCCcEEEEecc
Confidence 1 1123455555543 234666656543
No 120
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=76.23 E-value=5.3 Score=30.86 Aligned_cols=79 Identities=18% Similarity=0.239 Sum_probs=41.4
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
||+||.||=.| | .+...++..+.+ .|.++.+++..........+ ..... .+ ..+.+.++|.||+..|.
T Consensus 10 mmm~I~iIG~t--G---~mG~~la~~l~~-~g~~V~~~~r~~~~~~~~~~-~g~~~-~~----~~~~~~~aDvVi~av~~ 77 (286)
T 3c24_A 10 GPKTVAILGAG--G---KMGARITRKIHD-SAHHLAAIEIAPEGRDRLQG-MGIPL-TD----GDGWIDEADVVVLALPD 77 (286)
T ss_dssp CCCEEEEETTT--S---HHHHHHHHHHHH-SSSEEEEECCSHHHHHHHHH-TTCCC-CC----SSGGGGTCSEEEECSCH
T ss_pred cCCEEEEECCC--C---HHHHHHHHHHHh-CCCEEEEEECCHHHHHHHHh-cCCCc-CC----HHHHhcCCCEEEEcCCc
Confidence 34577775321 3 344445555555 57788777653221111111 11101 11 13457899999999997
Q ss_pred cCCccHHHHHHHHHHhc
Q 028841 81 RFGMMAAQFKAFLDATG 97 (203)
Q Consensus 81 y~~~~~~~~k~~ld~~~ 97 (203)
.. ++..++.+.
T Consensus 78 ~~------~~~v~~~l~ 88 (286)
T 3c24_A 78 NI------IEKVAEDIV 88 (286)
T ss_dssp HH------HHHHHHHHG
T ss_pred hH------HHHHHHHHH
Confidence 54 455565553
No 121
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=76.11 E-value=5.2 Score=24.83 Aligned_cols=37 Identities=11% Similarity=0.030 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
||+++.+++.+..+.++++...+.+ .|++++.+|+.+
T Consensus 4 ~m~~v~ly~~~~C~~C~~~~~~L~~-----~~i~~~~~di~~ 40 (92)
T 2khp_A 4 SMVDVIIYTRPGCPYCARAKALLAR-----KGAEFNEIDASA 40 (92)
T ss_dssp CCCCEEEEECTTCHHHHHHHHHHHH-----TTCCCEEEESTT
T ss_pred CcccEEEEECCCChhHHHHHHHHHH-----cCCCcEEEECCC
Confidence 6756555444445777766555543 366788888753
No 122
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=75.34 E-value=6.6 Score=30.51 Aligned_cols=115 Identities=9% Similarity=0.168 Sum_probs=56.6
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccC
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRF 82 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~ 82 (203)
+||.||=.-.-| ..++..+. + .|.+|.++|......+...+. ......+ ..+.+.++|.||+..|.
T Consensus 4 ~~I~iiG~G~mG--~~~a~~l~----~-~G~~V~~~d~~~~~~~~~~~~-g~~~~~~----~~~~~~~aDvvi~~vp~-- 69 (302)
T 2h78_A 4 KQIAFIGLGHMG--APMATNLL----K-AGYLLNVFDLVQSAVDGLVAA-GASAARS----ARDAVQGADVVISMLPA-- 69 (302)
T ss_dssp CEEEEECCSTTH--HHHHHHHH----H-TTCEEEEECSSHHHHHHHHHT-TCEECSS----HHHHHTTCSEEEECCSC--
T ss_pred CEEEEEeecHHH--HHHHHHHH----h-CCCeEEEEcCCHHHHHHHHHC-CCeEcCC----HHHHHhCCCeEEEECCC--
Confidence 488887322222 23444443 3 577888887643222221111 0000111 13456789999999985
Q ss_pred CccHHHHHHHHH---HhcccccccCC-CCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCC
Q 028841 83 GMMAAQFKAFLD---ATGGLWRTQQL-AGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 83 ~~~~~~~k~~ld---~~~~~~~~~~l-~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~ 145 (203)
+..++..+. .+.. .+ +++. ++.++.. ... ....+.+.+...|..++..+
T Consensus 70 ---~~~~~~v~~~~~~~~~-----~l~~~~~--vi~~st~---~~~-~~~~l~~~~~~~g~~~~~~p 122 (302)
T 2h78_A 70 ---SQHVEGLYLDDDGLLA-----HIAPGTL--VLECSTI---APT-SARKIHAAARERGLAMLDAP 122 (302)
T ss_dssp ---HHHHHHHHHSSSCGGG-----SSCSSCE--EEECSCC---CHH-HHHHHHHHHHHTTCCEEECC
T ss_pred ---HHHHHHHHcCchhHHh-----cCCCCcE--EEECCCC---CHH-HHHHHHHHHHHcCCEEEEEE
Confidence 345677666 3321 22 3332 2333221 111 13345666766777777644
No 123
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=74.83 E-value=13 Score=28.96 Aligned_cols=115 Identities=15% Similarity=0.106 Sum_probs=56.4
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCC-CCCCCCCChhhhhhcCeeEEecccc
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPP-KSDVPIITPNELAEADGFVFGFPTR 81 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~-~~d~~~~~~~~l~~aD~iiigsP~y 81 (203)
+||.|| |. |+ |...++..+.+ .|.+|.++|......+...+. .... ..+. .+.+.++|.||+..|..
T Consensus 8 ~~I~iI-G~--G~---mG~~~a~~l~~-~G~~V~~~dr~~~~~~~~~~~-g~~~~~~~~----~e~~~~aDvvi~~vp~~ 75 (303)
T 3g0o_A 8 FHVGIV-GL--GS---MGMGAARSCLR-AGLSTWGADLNPQACANLLAE-GACGAAASA----REFAGVVDALVILVVNA 75 (303)
T ss_dssp CEEEEE-CC--SH---HHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHT-TCSEEESSS----TTTTTTCSEEEECCSSH
T ss_pred CeEEEE-CC--CH---HHHHHHHHHHH-CCCeEEEEECCHHHHHHHHHc-CCccccCCH----HHHHhcCCEEEEECCCH
Confidence 467776 43 32 33344444444 588888887643222222111 1111 1111 23567899999999863
Q ss_pred CCccHHHHHHHH---HHhcccccccCC-CCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCC
Q 028841 82 FGMMAAQFKAFL---DATGGLWRTQQL-AGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 82 ~~~~~~~~k~~l---d~~~~~~~~~~l-~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~ 145 (203)
..++..+ +.+.. .+ +++.+ +.++.. ... +...+.+.+...|..++..+
T Consensus 76 -----~~~~~v~~~~~~l~~-----~l~~g~iv--v~~st~---~~~-~~~~~~~~~~~~g~~~~~~p 127 (303)
T 3g0o_A 76 -----AQVRQVLFGEDGVAH-----LMKPGSAV--MVSSTI---SSA-DAQEIAAALTALNLNMLDAP 127 (303)
T ss_dssp -----HHHHHHHC--CCCGG-----GSCTTCEE--EECSCC---CHH-HHHHHHHHHHTTTCEEEECC
T ss_pred -----HHHHHHHhChhhHHh-----hCCCCCEE--EecCCC---CHH-HHHHHHHHHHHcCCeEEeCC
Confidence 3455554 33321 13 33332 222211 122 23445666777788877644
No 124
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=74.81 E-value=7.7 Score=28.11 Aligned_cols=11 Identities=36% Similarity=0.785 Sum_probs=8.8
Q ss_pred hhhhcCeeEEe
Q 028841 67 ELAEADGFVFG 77 (203)
Q Consensus 67 ~l~~aD~iiig 77 (203)
++.++|+||+.
T Consensus 35 ~l~~~d~iil~ 45 (196)
T 2nv0_A 35 QLNEVDGLILP 45 (196)
T ss_dssp GGGGCSEEEEC
T ss_pred HHhhCCEEEEC
Confidence 46789999885
No 125
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=74.73 E-value=21 Score=25.74 Aligned_cols=50 Identities=14% Similarity=0.121 Sum_probs=29.8
Q ss_pred EEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhh--hcCeeEE-eccc
Q 028841 5 VYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELA--EADGFVF-GFPT 80 (203)
Q Consensus 5 ilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~--~aD~iii-gsP~ 80 (203)
|+||-.- .+.+..+++.+.+ .|.+++++...+.. .+++. ++|+||+ +.|-
T Consensus 4 i~iid~~-~s~~~~~~~~l~~-----~G~~~~v~~~~~~~--------------------~~~~~~~~~dglil~gG~~ 56 (195)
T 1qdl_B 4 TLIIDNY-DSFVYNIAQIVGE-----LGSYPIVIRNDEIS--------------------IKGIERIDPDRLIISPGPG 56 (195)
T ss_dssp EEEEECS-CSSHHHHHHHHHH-----TTCEEEEEETTTSC--------------------HHHHHHHCCSEEEECCCSS
T ss_pred EEEEECC-CchHHHHHHHHHh-----CCCEEEEEeCCCCC--------------------HHHHhhCCCCEEEECCCCC
Confidence 8888622 2345555555543 47788888764321 22444 5999999 5553
No 126
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=74.59 E-value=7.6 Score=30.49 Aligned_cols=39 Identities=10% Similarity=0.070 Sum_probs=28.0
Q ss_pred CceEEEEEcC--CcchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 2 ATKVYIVYYS--MYGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 2 m~kilii~~S--~~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
|+|+++|+-. ..|...++.+.+.+.+.+ .|.+++++...
T Consensus 8 m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~-~~~~~~~~~t~ 48 (304)
T 3s40_A 8 FEKVLLIVNPKAGQGDLHTNLTKIVPPLAA-AFPDLHILHTK 48 (304)
T ss_dssp CSSEEEEECTTCSSSCHHHHHHHHHHHHHH-HCSEEEEEECC
T ss_pred CCEEEEEECcccCCCchHHHHHHHHHHHHH-cCCeEEEEEcc
Confidence 5688777643 455667788888888887 68888876543
No 127
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}
Probab=74.48 E-value=9.2 Score=27.07 Aligned_cols=97 Identities=19% Similarity=0.132 Sum_probs=48.4
Q ss_pred CCceEEEEEcCC-cc---hHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhh----hhhcC
Q 028841 1 MATKVYIVYYSM-YG---HVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNE----LAEAD 72 (203)
Q Consensus 1 Mm~kilii~~S~-~g---~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~----l~~aD 72 (203)
|++||+|+.+.. +| .. ..+.+. + .+++++++......+ +.....-....+. ..++ ..++|
T Consensus 1 m~~~v~ill~~~~~g~~~~~--~~e~~~----~-~~~~v~~vs~~~~~~--v~~~~g~~v~~d~---~~~~~~~~~~~~D 68 (175)
T 3cne_A 1 MAKKVAVLAVNPVNGCGLFQ--YLEAFF----E-NGISYKVFAVSDTKE--IKTNSGMVLIVDD---VIANLKGHEDEFD 68 (175)
T ss_dssp -CCEEEEEECSSBCHHHHHH--HHHHHH----H-TTCEEEEEESSSSSE--EEBTTSCEEECSE---EGGGGTTCGGGCS
T ss_pred CCcEEEEEEecCcCCCccch--hhheee----e-CCCEEEEEECCCCCc--eecCCCeEEEecc---CHHHhccCcccCC
Confidence 667888887651 23 21 233333 3 578999888763111 1000000000111 1223 37899
Q ss_pred eeEEecc----cc-CCc---cHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 73 GFVFGFP----TR-FGM---MAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 73 ~iiigsP----~y-~~~---~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
+||+... -. .-. ..+.+..|+.+.. -.+|+++.++++
T Consensus 69 ~livpGG~~~~~~~~l~~~~~~~~~~~~l~~~~-------~~gk~i~aiC~G 113 (175)
T 3cne_A 69 ALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFG-------EKGKMMIGHCAG 113 (175)
T ss_dssp EEEEECCTTGGGGGGCTTCHHHHHHHHHHHHHH-------HTTCEEEEETTH
T ss_pred EEEECCCcCcccHHHHhhcccCHHHHHHHHHHH-------HCCCEEEEECHH
Confidence 9988543 11 111 3456677776653 367887777664
No 128
>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}
Probab=74.24 E-value=6.1 Score=30.34 Aligned_cols=100 Identities=10% Similarity=-0.085 Sum_probs=47.7
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhh-hhcCeeEEecc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNEL-AEADGFVFGFP 79 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l-~~aD~iiigsP 79 (203)
|++||+|+.+-.. +..=+-...+.+....|++++++....... .....-....|.. .+++ ..+|.||+..-
T Consensus 22 m~~~I~ill~~gf--~~~e~~~p~dvl~~~~~~~v~~vs~~~~~V---~~~~G~~i~~d~~---l~~~~~~yD~liVPGG 93 (253)
T 3ewn_A 22 GDEQIAMLVYPGM--TVMDLVGPHCMFGSLMGAKIYIVAKSLDPV---TSDAGLAIVPTAT---FGTCPRDLTVLFAPGG 93 (253)
T ss_dssp CCCEEEEECCTTB--CHHHHHHHHHHHTTSTTCEEEEEESSSSCE---ECTTSCEECCSEE---TTTSCSSCSEEEECCB
T ss_pred CCeEEEEEeCCCC--cHHHHHHHHHHHHhCCCCEEEEEeCCCCeE---EcCCCCEEeCCcC---HHHcCCCCCEEEECCC
Confidence 5568888876532 222222344555322688999888764321 1100000011110 1112 25699988432
Q ss_pred ---ccCCccHHHHHHHHHHhcccccccCCCCCceEEEEe
Q 028841 80 ---TRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYS 115 (203)
Q Consensus 80 ---~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t 115 (203)
.....-.+.+..||.+.. -.+|.++.+++
T Consensus 94 ~~g~~~l~~~~~l~~~Lr~~~-------~~gk~IaaICt 125 (253)
T 3ewn_A 94 TDGTLAAASDAETLAFMADRG-------ARAKYITSVCS 125 (253)
T ss_dssp SHHHHHHTTCHHHHHHHHHHH-------TTCSEEEEETT
T ss_pred ccchhhhccCHHHHHHHHHHH-------HcCCEEEEECh
Confidence 122223456677776653 34566665554
No 129
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=73.88 E-value=4.8 Score=29.53 Aligned_cols=34 Identities=15% Similarity=0.234 Sum_probs=20.1
Q ss_pred CCceEEEEEcCCcchH-HHHHHHHHHhcccCCCceEEEEEc
Q 028841 1 MATKVYIVYYSMYGHV-EKLAEEIKKGASSVEGVEAKLWQV 40 (203)
Q Consensus 1 Mm~kilii~~S~~g~T-~~la~~i~~~~~~~~g~~v~~~~l 40 (203)
||+||+|+.+.. +++ ..+ .+.+++ .|.++.++..
T Consensus 1 m~~~i~il~~~~-~~~~~~~----~~~l~~-~g~~~~~~~~ 35 (213)
T 3d54_D 1 MKPRACVVVYPG-SNCDRDA----YHALEI-NGFEPSYVGL 35 (213)
T ss_dssp CCCEEEEECCTT-EEEHHHH----HHHHHT-TTCEEEEECT
T ss_pred CCcEEEEEEcCC-CCccHHH----HHHHHH-CCCEEEEEec
Confidence 788998886542 222 223 445555 5777777653
No 130
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=73.73 E-value=17 Score=28.36 Aligned_cols=117 Identities=12% Similarity=0.091 Sum_probs=58.8
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccC
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRF 82 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~ 82 (203)
+||.|| |. |+ |...++..+.+ .|.+|.++|..........+. ......+ ..+.+.++|.||+..|.-
T Consensus 22 ~~I~iI-G~--G~---mG~~~A~~l~~-~G~~V~~~dr~~~~~~~l~~~-g~~~~~~----~~~~~~~aDvvi~~vp~~- 88 (310)
T 3doj_A 22 MEVGFL-GL--GI---MGKAMSMNLLK-NGFKVTVWNRTLSKCDELVEH-GASVCES----PAEVIKKCKYTIAMLSDP- 88 (310)
T ss_dssp CEEEEE-CC--SH---HHHHHHHHHHH-TTCEEEEECSSGGGGHHHHHT-TCEECSS----HHHHHHHCSEEEECCSSH-
T ss_pred CEEEEE-Cc--cH---HHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHHC-CCeEcCC----HHHHHHhCCEEEEEcCCH-
Confidence 377776 33 32 34444444444 578898888754433222211 1000111 134578899999999853
Q ss_pred CccHHHHHHHH---HHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCC
Q 028841 83 GMMAAQFKAFL---DATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGY 146 (203)
Q Consensus 83 ~~~~~~~k~~l---d~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~ 146 (203)
..++..+ +.+... ..+|+.+ +.++.. ... ....+.+.+...|..+++.++
T Consensus 89 ----~~~~~v~~~~~~l~~~----l~~g~~v--v~~st~---~~~-~~~~~~~~~~~~g~~~v~~pv 141 (310)
T 3doj_A 89 ----CAALSVVFDKGGVLEQ----ICEGKGY--IDMSTV---DAE-TSLKINEAITGKGGRFVEGPV 141 (310)
T ss_dssp ----HHHHHHHHSTTCGGGG----CCTTCEE--EECSCC---CHH-HHHHHHHHHHHTTCEEEECCE
T ss_pred ----HHHHHHHhCchhhhhc----cCCCCEE--EECCCC---CHH-HHHHHHHHHHHcCCEEEeCCC
Confidence 3455555 333211 1234332 223221 112 234456667777888876543
No 131
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=73.65 E-value=4.3 Score=31.38 Aligned_cols=42 Identities=14% Similarity=0.135 Sum_probs=29.2
Q ss_pred CCceEEEEEcCCcc---hHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 1 MATKVYIVYYSMYG---HVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 1 Mm~kilii~~S~~g---~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
|++||+|+++.... .+-..++.+.+.+++ .|+++..++..+.
T Consensus 1 m~~~i~il~gg~s~e~~~s~~~~~~l~~al~~-~G~~v~~~~~~~~ 45 (306)
T 1iow_A 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLRE-GGIDAYPVDPKEV 45 (306)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHHHHHH-TTCEEEEECTTTS
T ss_pred CCcEEEEEeCCCCccceEcHHhHHHHHHHHHH-CCCeEEEEecCch
Confidence 66789999876532 122245667777777 6999999988754
No 132
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=73.50 E-value=23 Score=25.63 Aligned_cols=89 Identities=13% Similarity=0.102 Sum_probs=42.3
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCC--CChhhhhhcCeeEEecc
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPI--ITPNELAEADGFVFGFP 79 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~--~~~~~l~~aD~iiigsP 79 (203)
|++|+| +|-|-.+...+.+.+.+ .|.+|..++-............ ....-|+.+ ...+.+...|.||....
T Consensus 4 m~~ilI-----tGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~-~~~~~Dl~d~~~~~~~~~~~d~vi~~a~ 76 (227)
T 3dhn_A 4 VKKIVL-----IGASGFVGSALLNEALN-RGFEVTAVVRHPEKIKIENEHL-KVKKADVSSLDEVCEVCKGADAVISAFN 76 (227)
T ss_dssp CCEEEE-----ETCCHHHHHHHHHHHHT-TTCEEEEECSCGGGCCCCCTTE-EEECCCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CCEEEE-----EcCCchHHHHHHHHHHH-CCCEEEEEEcCcccchhccCce-EEEEecCCCHHHHHHHhcCCCEEEEeCc
Confidence 347776 34445667777777766 6778877765432110000000 000112211 11345668899998875
Q ss_pred ccCCcc------HHHHHHHHHHhc
Q 028841 80 TRFGMM------AAQFKAFLDATG 97 (203)
Q Consensus 80 ~y~~~~------~~~~k~~ld~~~ 97 (203)
..+... -...+++++.+.
T Consensus 77 ~~~~~~~~~~~n~~~~~~l~~~~~ 100 (227)
T 3dhn_A 77 PGWNNPDIYDETIKVYLTIIDGVK 100 (227)
T ss_dssp C------CCSHHHHHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHH
Confidence 543221 123455666553
No 133
>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}
Probab=71.73 E-value=2.2 Score=32.33 Aligned_cols=80 Identities=9% Similarity=0.161 Sum_probs=39.2
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCc----eEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEE
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGV----EAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVF 76 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~----~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iii 76 (203)
||+||.|| + .|+ |...++..+.+ .|. ++.++|...................+ ..+.+.++|.||+
T Consensus 1 M~~~i~iI-G--~G~---mG~~~a~~l~~-~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~----~~e~~~~aDvVil 69 (247)
T 3gt0_A 1 MDKQIGFI-G--CGN---MGMAMIGGMIN-KNIVSSNQIICSDLNTANLKNASEKYGLTTTTD----NNEVAKNADILIL 69 (247)
T ss_dssp CCCCEEEE-C--CSH---HHHHHHHHHHH-TTSSCGGGEEEECSCHHHHHHHHHHHCCEECSC----HHHHHHHCSEEEE
T ss_pred CCCeEEEE-C--ccH---HHHHHHHHHHh-CCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCC----hHHHHHhCCEEEE
Confidence 66688876 3 232 34444444444 465 78777754322222211101111111 1345788999999
Q ss_pred eccccCCccHHHHHHHHHHhc
Q 028841 77 GFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 77 gsP~y~~~~~~~~k~~ld~~~ 97 (203)
+.|.+ .++..++.+.
T Consensus 70 av~~~------~~~~v~~~l~ 84 (247)
T 3gt0_A 70 SIKPD------LYASIINEIK 84 (247)
T ss_dssp CSCTT------THHHHC---C
T ss_pred EeCHH------HHHHHHHHHH
Confidence 99754 3455555553
No 134
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=71.63 E-value=11 Score=28.06 Aligned_cols=33 Identities=9% Similarity=0.103 Sum_probs=19.7
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
++|+||-+- .+++..+++.+.+ .|.++.++...
T Consensus 25 ~~I~iiD~g-~~~~~~i~~~l~~-----~G~~~~vv~~~ 57 (218)
T 2vpi_A 25 GAVVILDAG-AQYGKVIDRRVRE-----LFVQSEIFPLE 57 (218)
T ss_dssp TCEEEEECS-TTTTHHHHHHHHH-----TTCCEEEECTT
T ss_pred CeEEEEECC-CchHHHHHHHHHH-----CCCEEEEEECC
Confidence 578888432 3445555655543 46678777654
No 135
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}
Probab=71.32 E-value=33 Score=26.48 Aligned_cols=116 Identities=12% Similarity=0.080 Sum_probs=58.5
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccC
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRF 82 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~ 82 (203)
+||.|| +. |+ |...++..+.+ .|.+|.++|......+...+. .....+ ..+++.++|.||+..|..
T Consensus 16 ~~I~vI-G~--G~---mG~~~A~~l~~-~G~~V~~~dr~~~~~~~~~~~-g~~~~~-----~~~~~~~aDvvi~~vp~~- 81 (296)
T 3qha_A 16 LKLGYI-GL--GN---MGAPMATRMTE-WPGGVTVYDIRIEAMTPLAEA-GATLAD-----SVADVAAADLIHITVLDD- 81 (296)
T ss_dssp CCEEEE-CC--ST---THHHHHHHHTT-STTCEEEECSSTTTSHHHHHT-TCEECS-----SHHHHTTSSEEEECCSSH-
T ss_pred CeEEEE-Cc--CH---HHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHHC-CCEEcC-----CHHHHHhCCEEEEECCCh-
Confidence 367776 33 21 23334444555 588999998766544333221 000011 123333399999999853
Q ss_pred CccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCC
Q 028841 83 GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGY 146 (203)
Q Consensus 83 ~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~ 146 (203)
..++..++.+... ..+++.+ +.++.. ... +...+.+.+...|..+++.+.
T Consensus 82 ----~~~~~v~~~l~~~----l~~g~iv--v~~st~---~~~-~~~~~~~~~~~~g~~~~~~pv 131 (296)
T 3qha_A 82 ----AQVREVVGELAGH----AKPGTVI--AIHSTI---SDT-TAVELARDLKARDIHIVDAPV 131 (296)
T ss_dssp ----HHHHHHHHHHHTT----CCTTCEE--EECSCC---CHH-HHHHHHHHHGGGTCEEEECCE
T ss_pred ----HHHHHHHHHHHHh----cCCCCEE--EEeCCC---CHH-HHHHHHHHHHHcCCEEEeCCC
Confidence 3466666655321 1233332 222211 112 234466677777888876553
No 136
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}
Probab=71.04 E-value=18 Score=27.78 Aligned_cols=117 Identities=13% Similarity=0.148 Sum_probs=58.6
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
|| ||.||=.-.-| ..++..+.+ .|.+|.++|......+...+. .....++ ..+.+.++|.||+..|.
T Consensus 1 M~-~I~iiG~G~mG--~~~a~~l~~-----~G~~V~~~dr~~~~~~~~~~~-g~~~~~~----~~~~~~~advvi~~v~~ 67 (287)
T 3pdu_A 1 MT-TYGFLGLGIMG--GPMAANLVR-----AGFDVTVWNRNPAKCAPLVAL-GARQASS----PAEVCAACDITIAMLAD 67 (287)
T ss_dssp CC-CEEEECCSTTH--HHHHHHHHH-----HTCCEEEECSSGGGGHHHHHH-TCEECSC----HHHHHHHCSEEEECCSS
T ss_pred CC-eEEEEccCHHH--HHHHHHHHH-----CCCeEEEEcCCHHHHHHHHHC-CCeecCC----HHHHHHcCCEEEEEcCC
Confidence 54 88887322223 234555443 366888887654332222211 0000111 13456889999999985
Q ss_pred cCCccHHHHHHHH---HHhcccccccCC-CCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCC
Q 028841 81 RFGMMAAQFKAFL---DATGGLWRTQQL-AGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGY 146 (203)
Q Consensus 81 y~~~~~~~~k~~l---d~~~~~~~~~~l-~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~ 146 (203)
+..++..+ +.+.. .+ +++.+ +.++.. ... ....+.+.+...|..++..+.
T Consensus 68 -----~~~~~~v~~~~~~l~~-----~l~~g~~v--v~~st~---~~~-~~~~~~~~~~~~g~~~~~~pv 121 (287)
T 3pdu_A 68 -----PAAAREVCFGANGVLE-----GIGGGRGY--IDMSTV---DDE-TSTAIGAAVTARGGRFLEAPV 121 (287)
T ss_dssp -----HHHHHHHHHSTTCGGG-----TCCTTCEE--EECSCC---CHH-HHHHHHHHHHHTTCEEEECCE
T ss_pred -----HHHHHHHHcCchhhhh-----cccCCCEE--EECCCC---CHH-HHHHHHHHHHHcCCEEEECCc
Confidence 23566666 43321 22 33332 233221 122 234456667777888776543
No 137
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=70.93 E-value=8.5 Score=29.08 Aligned_cols=53 Identities=9% Similarity=0.021 Sum_probs=34.7
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEe-cc
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFG-FP 79 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiig-sP 79 (203)
+|+||-.+..+|...+.+.+.. .|.++.++...+.. + ..+.+..+|+|||. .|
T Consensus 14 ~~~~i~~~~~~~~~~i~~~l~~-----~G~~v~v~~~~~~~--------------~----~~~~l~~~Dglil~GG~ 67 (239)
T 1o1y_A 14 RVLAIRHVEIEDLGMMEDIFRE-----KNWSFDYLDTPKGE--------------K----LERPLEEYSLVVLLGGY 67 (239)
T ss_dssp EEEEECSSTTSSCTHHHHHHHH-----TTCEEEEECGGGTC--------------C----CSSCGGGCSEEEECCCS
T ss_pred EEEEEECCCCCCchHHHHHHHh-----CCCcEEEeCCcCcc--------------c----cccchhcCCEEEECCCC
Confidence 6889999888887766666644 36677766553211 0 12357789999885 44
No 138
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=70.91 E-value=4.8 Score=32.86 Aligned_cols=39 Identities=3% Similarity=-0.095 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
||+||+|+..- |....=+-...+.+++ .|++++++....
T Consensus 204 ~~~ki~ill~d--g~~~~e~~~~~~~l~~-ag~~v~~vs~~~ 242 (396)
T 3uk7_A 204 ANKRILFLCGD--YMEDYEVKVPFQSLQA-LGCQVDAVCPEK 242 (396)
T ss_dssp CCCEEEEECCT--TEEHHHHHHHHHHHHH-HTCEEEEECTTC
T ss_pred ccceEEEEecC--CCcchhHHHHHHHHHH-CCCEEEEECCCC
Confidence 46788887663 3222223334455555 578888887654
No 139
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=70.52 E-value=15 Score=27.10 Aligned_cols=63 Identities=17% Similarity=0.109 Sum_probs=32.4
Q ss_pred HHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCC-C-CCCCCCCCChhhhhhcCeeEEeccccC
Q 028841 18 KLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSA-P-PKSDVPIITPNELAEADGFVFGFPTRF 82 (203)
Q Consensus 18 ~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~-~-~~~d~~~~~~~~l~~aD~iiigsP~y~ 82 (203)
.+..++++.+.+ .|.+|..++-........... .. . ..-|+.+...+.+...|.||.......
T Consensus 32 ~iG~~l~~~L~~-~G~~V~~~~R~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~~~ 96 (236)
T 3e8x_A 32 KVARYLLSELKN-KGHEPVAMVRNEEQGPELRER-GASDIVVANLEEDFSHAFASIDAVVFAAGSGP 96 (236)
T ss_dssp HHHHHHHHHHHH-TTCEEEEEESSGGGHHHHHHT-TCSEEEECCTTSCCGGGGTTCSEEEECCCCCT
T ss_pred hHHHHHHHHHHh-CCCeEEEEECChHHHHHHHhC-CCceEEEcccHHHHHHHHcCCCEEEECCCCCC
Confidence 344455555544 577888877543322211110 11 1 011222223566788999998877654
No 140
>2qs7_A Uncharacterized protein; putative oxidoreductase of the DSRE/DSRF-like family, struct genomics, joint center for structural genomics; HET: MSE EPE; 2.09A {Sulfolobus solfataricus P2}
Probab=70.05 E-value=6.8 Score=27.21 Aligned_cols=40 Identities=20% Similarity=0.162 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
||+|++||..|..-.....+=.++..+.+ .|.+|+++-..
T Consensus 6 m~~kl~II~~sg~~d~~~~a~~lA~~Aaa-~g~eV~iF~t~ 45 (144)
T 2qs7_A 6 KKKKLSIIVFSGTIDKLMPVGILTSGAAA-SGYEVNLFFTF 45 (144)
T ss_dssp -CCEEEEEECCCSHHHHHHHHHHHHHHHH-TTCEEEEEECH
T ss_pred ccCCEEEEEEcCCHHHHHHHHHHHHHHHH-cCCcEEEEEeh
Confidence 46789999988653322233344444445 68899988653
No 141
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=68.80 E-value=11 Score=25.60 Aligned_cols=42 Identities=10% Similarity=-0.096 Sum_probs=27.5
Q ss_pred CCceEEEEEcCC-cc-hHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 1 MATKVYIVYYSM-YG-HVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 1 Mm~kilii~~S~-~g-~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
||+|++||..|. ++ .....+-.++..+.+ .|.+|.++-..+-
T Consensus 14 ~~~kl~ii~~sgP~~~~~~~~al~lA~~A~a-~g~eV~vFf~~dG 57 (134)
T 3mc3_A 14 QXXXILIVVTHGPEDLDRTYAPLFMASISAS-MEYETSVFFMIXG 57 (134)
T ss_dssp CCCEEEEEECCCGGGTHHHHHHHHHHHHHHH-TTCEEEEEECTTG
T ss_pred ccceEEEEEccCCCCHHHHHHHHHHHHHHHH-CCCCEEEEEEeCc
Confidence 357899888875 33 344455556665555 6889988776553
No 142
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=68.27 E-value=12 Score=28.88 Aligned_cols=39 Identities=8% Similarity=0.011 Sum_probs=29.2
Q ss_pred eEEEEEcCCcc---hHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 4 KVYIVYYSMYG---HVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilii~~S~~g---~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
||+|+++.... -+..-++.+.+.+.+ .|+++..+|+.+.
T Consensus 5 ~v~vl~gg~s~e~~vs~~s~~~v~~al~~-~g~~v~~i~~~~~ 46 (307)
T 3r5x_A 5 RIGVIMGGVSSEKQVSIMTGNEMIANLDK-NKYEIVPITLNEK 46 (307)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHHSCT-TTEEEEEEECSSG
T ss_pred EEEEEeCCCCcchHhHHHHHHHHHHHHHH-CCCEEEEEcccCc
Confidence 89999986532 233447788888888 7999999998753
No 143
>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}
Probab=67.89 E-value=33 Score=26.18 Aligned_cols=74 Identities=16% Similarity=0.130 Sum_probs=38.1
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccC
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRF 82 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~ 82 (203)
+||.||=.-.-| ..++..+. + .|.++.+++ .........+. ......+ ..+.+.++|.||+.+|...
T Consensus 4 m~i~iiG~G~~G--~~~a~~l~----~-~g~~V~~~~-~~~~~~~~~~~-g~~~~~~----~~~~~~~~D~vi~~vp~~~ 70 (295)
T 1yb4_A 4 MKLGFIGLGIMG--SPMAINLA----R-AGHQLHVTT-IGPVADELLSL-GAVNVET----ARQVTEFADIIFIMVPDTP 70 (295)
T ss_dssp CEEEECCCSTTH--HHHHHHHH----H-TTCEEEECC-SSCCCHHHHTT-TCBCCSS----HHHHHHTCSEEEECCSSHH
T ss_pred CEEEEEccCHHH--HHHHHHHH----h-CCCEEEEEc-CHHHHHHHHHc-CCcccCC----HHHHHhcCCEEEEECCCHH
Confidence 377776322223 23455443 3 467888777 54433332221 1000111 1345778999999998533
Q ss_pred CccHHHHHHHHH
Q 028841 83 GMMAAQFKAFLD 94 (203)
Q Consensus 83 ~~~~~~~k~~ld 94 (203)
.++..+.
T Consensus 71 -----~~~~v~~ 77 (295)
T 1yb4_A 71 -----QVEDVLF 77 (295)
T ss_dssp -----HHHHHHH
T ss_pred -----HHHHHHh
Confidence 3566665
No 144
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=67.56 E-value=13 Score=32.97 Aligned_cols=92 Identities=13% Similarity=0.034 Sum_probs=56.1
Q ss_pred CceEEEEEcCCcc-hHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 2 ATKVYIVYYSMYG-HVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 2 m~kilii~~S~~g-~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
.+||+|+.. .| ..+.-+..+.+.+++ .|++++++...... . .+..+. ...-..+|+|||-...
T Consensus 537 grKVaILva--dG~fE~~El~~p~~aL~~-aGa~V~vVsp~~g~--G--------vD~t~~---~~~s~~fDAVvlPGG~ 600 (688)
T 3ej6_A 537 TLRVGVLST--TKGGSLDKAKALKEQLEK-DGLKVTVIAEYLAS--G--------VDQTYS---AADATAFDAVVVAEGA 600 (688)
T ss_dssp TCEEEEECC--SSSSHHHHHHHHHHHHHH-TTCEEEEEESSCCT--T--------CCEETT---TCCGGGCSEEEECTTC
T ss_pred CCEEEEEcc--CCCccHHHHHHHHHHHHH-CCCEEEEEeCCCCC--C--------cccCcc---cCChhcCcEEEECCCc
Confidence 357888765 34 555567777888888 79999999875421 0 000111 1235689999984332
Q ss_pred cC----------CccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 81 RF----------GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 81 y~----------~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
-. -...+....|+.... -.+|+++.++.+
T Consensus 601 ~~~~~~~~~~d~Lr~~~~a~~fV~e~~-------~hgKpIAAIchg 639 (688)
T 3ej6_A 601 ERVFSGKGAMSPLFPAGRPSQILTDGY-------RWGKPVAAVGSA 639 (688)
T ss_dssp CTTTSTTTTCCTTSCTTHHHHHHHHHH-------HTTCCEEEEGGG
T ss_pred ccccccccchhhhccCHHHHHHHHHHH-------HcCCEEEEeCcc
Confidence 11 123355667776653 368999988764
No 145
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=66.64 E-value=8 Score=30.78 Aligned_cols=40 Identities=13% Similarity=0.090 Sum_probs=29.8
Q ss_pred ceEEEEEcC--C-cchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 3 TKVYIVYYS--M-YGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 3 ~kilii~~S--~-~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
+||+++... . .|-.+..+..+++.+.+ .|.+|.++.....
T Consensus 21 MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~-~G~~V~v~~~~~~ 63 (406)
T 2gek_A 21 MRIGMVCPYSFDVPGGVQSHVLQLAEVLRD-AGHEVSVLAPASP 63 (406)
T ss_dssp CEEEEECSSCTTSCCHHHHHHHHHHHHHHH-TTCEEEEEESCCT
T ss_pred ceEEEEeccCCCCCCcHHHHHHHHHHHHHH-CCCeEEEEecCCc
Confidence 499998754 2 25566777788888887 6999999887654
No 146
>3ups_A Iojap-like protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; HET: MSE; 1.75A {Zymomonas mobilis subsp}
Probab=65.96 E-value=13 Score=25.81 Aligned_cols=49 Identities=12% Similarity=0.008 Sum_probs=36.4
Q ss_pred chHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCCccH
Q 028841 14 GHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMA 86 (203)
Q Consensus 14 g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~~~~ 86 (203)
-+++.+++.|.+.+.+..+.++.++|+.+.. .-+|.+||+|..-.-.+-
T Consensus 17 ~~~~~l~~~i~~al~dkKa~DI~vlDv~~~s------------------------~~~DyfVIatg~S~rqv~ 65 (136)
T 3ups_A 17 FDPEMLLKLVTDSLDDDQALEIATIPLAGKS------------------------SIADYMVIASGRSSRQVT 65 (136)
T ss_dssp CCHHHHHHHHHHHHHHTTCEEEEEEECTTTC------------------------SSCSEEEEEECSSHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCeEEEECCCCC------------------------cccCEEEEEEcCCHHHHH
Confidence 3577889999988887667799999998642 346999999866443333
No 147
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=65.10 E-value=5 Score=32.34 Aligned_cols=81 Identities=20% Similarity=0.186 Sum_probs=42.7
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCC--CCChhhhhhcCeeEEecccc
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVP--IITPNELAEADGFVFGFPTR 81 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~--~~~~~~l~~aD~iiigsP~y 81 (203)
||+|+ |+ |++-+ .+++.+.+ ..++.+.+......+...... ....-|.. +...+.+.++|+||-..|-+
T Consensus 18 kilvl-Ga--G~vG~---~~~~~L~~--~~~v~~~~~~~~~~~~~~~~~-~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~ 88 (365)
T 3abi_A 18 KVLIL-GA--GNIGR---AIAWDLKD--EFDVYIGDVNNENLEKVKEFA-TPLKVDASNFDKLVEVMKEFELVIGALPGF 88 (365)
T ss_dssp EEEEE-CC--SHHHH---HHHHHHTT--TSEEEEEESCHHHHHHHTTTS-EEEECCTTCHHHHHHHHTTCSEEEECCCGG
T ss_pred EEEEE-CC--CHHHH---HHHHHHhc--CCCeEEEEcCHHHHHHHhccC-CcEEEecCCHHHHHHHHhCCCEEEEecCCc
Confidence 78776 76 54332 33344443 347888776543222111100 00011211 11245678999999999988
Q ss_pred CCccHHHHHHHHHH
Q 028841 82 FGMMAAQFKAFLDA 95 (203)
Q Consensus 82 ~~~~~~~~k~~ld~ 95 (203)
.+ +..++..++.
T Consensus 89 ~~--~~v~~~~~~~ 100 (365)
T 3abi_A 89 LG--FKSIKAAIKS 100 (365)
T ss_dssp GH--HHHHHHHHHH
T ss_pred cc--chHHHHHHhc
Confidence 53 4567777665
No 148
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=64.99 E-value=7.4 Score=31.49 Aligned_cols=40 Identities=10% Similarity=0.189 Sum_probs=27.7
Q ss_pred CCceEEEEEcC--C--------cchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 1 MATKVYIVYYS--M--------YGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 1 Mm~kilii~~S--~--------~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
|| ||++|..+ + .|-.+..+..+++.+.+ .|++|.++-...
T Consensus 20 mm-kIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~-~G~~V~v~~~~~ 69 (438)
T 3c48_A 20 HM-RVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAK-QGIEVDIYTRAT 69 (438)
T ss_dssp CC-EEEEECTTSCTTCC-------CHHHHHHHHHHHHHH-TTCEEEEEEECC
T ss_pred hh-eeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHh-cCCEEEEEecCC
Confidence 45 99999753 2 24456667777788877 689999887654
No 149
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}
Probab=64.34 E-value=6.7 Score=24.19 Aligned_cols=36 Identities=8% Similarity=0.061 Sum_probs=21.3
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
||+++.+++.+..+..+++...+.+ . +++++.+|+.
T Consensus 4 mm~~v~~y~~~~C~~C~~~~~~L~~-~----~i~~~~vdv~ 39 (89)
T 2klx_A 4 SMKEIILYTRPNCPYCKRARDLLDK-K----GVKYTDIDAS 39 (89)
T ss_dssp CCCCEEEESCSCCTTTHHHHHHHHH-H----TCCEEEECSC
T ss_pred CcceEEEEECCCChhHHHHHHHHHH-c----CCCcEEEECC
Confidence 6766655444445777776655543 2 4567777764
No 150
>1wwj_A Circadian clock protein KAIB; 1.90A {Synechocystis SP} PDB: 1r5p_A 2qke_A 1vgl_A
Probab=62.93 E-value=20 Score=23.57 Aligned_cols=70 Identities=16% Similarity=0.157 Sum_probs=49.6
Q ss_pred EEEEEcC-CcchHHHHHHHHHHhcccC--CCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecccc
Q 028841 5 VYIVYYS-MYGHVEKLAEEIKKGASSV--EGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR 81 (203)
Q Consensus 5 ilii~~S-~~g~T~~la~~i~~~~~~~--~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y 81 (203)
+|.+|-+ .+-+|++..+.+.+.+++. ..++.+++|+.+-+ .+.+.| =|++||+-
T Consensus 9 ~L~LyVaG~tp~S~~ai~nL~~i~e~~l~~~y~LeVIDv~~~P----------------------elAe~~-~IvAtPTL 65 (105)
T 1wwj_A 9 VLKLYVAGNTPNSVRALKMLKNILEQEFQGVYALKVIDVLKNP----------------------QLAEED-KILATPTL 65 (105)
T ss_dssp EEEEEESSCCHHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCC----------------------SCCTTC-EEECHHHH
T ss_pred EEEEEEeCCCchHHHHHHHHHHHHHHhcCCCeEEEEEEcccCH----------------------hHHhHC-CeEEechh
Confidence 3555655 6777777777776666432 45689999997642 233333 36899999
Q ss_pred CCccHHHHHHHHHHhc
Q 028841 82 FGMMAAQFKAFLDATG 97 (203)
Q Consensus 82 ~~~~~~~~k~~ld~~~ 97 (203)
---.|.+.+.++-.++
T Consensus 66 iK~~P~P~rriiGDLs 81 (105)
T 1wwj_A 66 AKILPPPVRKIIGDLS 81 (105)
T ss_dssp GGGSCHHHHHHHHHHH
T ss_pred hhcCCCCceeEeecCC
Confidence 9999999999998875
No 151
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=62.07 E-value=12 Score=33.53 Aligned_cols=101 Identities=14% Similarity=-0.019 Sum_probs=57.5
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecc--c
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFP--T 80 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP--~ 80 (203)
+||+|+.+- |..+.-+..+.+.|++ .|++++++...... +..........|.... ...-..+|+|||.-- .
T Consensus 601 rKVaILlaD--GfEe~El~~pvdaLr~-AG~~V~vVS~~~g~---V~gs~G~~V~aD~t~~-~v~s~~fDALVVPGGg~~ 673 (753)
T 3ttv_A 601 RVVAILLND--EVRSADLLAILKALKA-KGVHAKLLYSRMGE---VTADDGTVLPIAATFA-GAPSLTVDAVIVPCGNIA 673 (753)
T ss_dssp CEEEEECCT--TCCHHHHHHHHHHHHH-HTCEEEEEESSSSE---EECTTSCEEECCEETT-TSCGGGCSEEEECCSCGG
T ss_pred CEEEEEecC--CCCHHHHHHHHHHHHH-CCCEEEEEEcCCCe---EEeCCCCEEecccchh-hCCCcCCCEEEECCCChH
Confidence 578887653 5555556667777877 68999999875431 1110000001111000 012346899998543 2
Q ss_pred cCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCC
Q 028841 81 RFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGS 118 (203)
Q Consensus 81 y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~ 118 (203)
. -...+.+..|+.... -.+|+++.+|++.+
T Consensus 674 ~-Lr~d~~vl~~Vre~~-------~~gKpIAAIC~Gp~ 703 (753)
T 3ttv_A 674 D-IADNGDANYYLMEAY-------KHLKPIALAGDARK 703 (753)
T ss_dssp G-TTTCHHHHHHHHHHH-------HTTCCEEEEGGGGG
T ss_pred H-hhhCHHHHHHHHHHH-------hcCCeEEEECchHH
Confidence 2 223456777777763 47899999887643
No 152
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12
Probab=61.71 E-value=14 Score=25.41 Aligned_cols=48 Identities=4% Similarity=0.056 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCCccHH
Q 028841 16 VEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAA 87 (203)
Q Consensus 16 T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~~~~~ 87 (203)
+..+++.+++.+.+..+.++.++|+++. -.-+|.+||+|..-.-.+-+
T Consensus 3 ~~~l~~~i~~al~dkKa~DI~vlDv~~~------------------------s~~~DyfVIaTg~S~rqv~A 50 (130)
T 2id1_A 3 IQEISKLAIEALEDIKGKDIIELDTSKL------------------------TSLFQRMIVATGDSNRQVKA 50 (130)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEGGGT------------------------CSSCSEEEEEECSSHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEEcCCC------------------------CcccCEEEEEEcCCHHHHHH
Confidence 4677888888887756779999999764 23579999998665444333
No 153
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=60.92 E-value=7 Score=24.20 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
||++|.++..+..+.++++...+.+ + |++++.+++..
T Consensus 10 ~M~~v~ly~~~~Cp~C~~~~~~L~~-~----gi~~~~~~v~~ 46 (92)
T 3ic4_A 10 GMAEVLMYGLSTCPHCKRTLEFLKR-E----GVDFEVIWIDK 46 (92)
T ss_dssp TCSSSEEEECTTCHHHHHHHHHHHH-H----TCCCEEEEGGG
T ss_pred CCceEEEEECCCChHHHHHHHHHHH-c----CCCcEEEEeee
Confidence 4556555444456777775555543 3 55778888764
No 154
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=60.84 E-value=37 Score=27.25 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=20.5
Q ss_pred hhhhhcCeeEEeccccCCccHHHHHHHHHHhc
Q 028841 66 NELAEADGFVFGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~ 97 (203)
+.+.++|.||++.|.+ .++..++.+.
T Consensus 95 ea~~~aDvVilaVp~~------~~~~vl~~i~ 120 (356)
T 3k96_A 95 ASLEGVTDILIVVPSF------AFHEVITRMK 120 (356)
T ss_dssp HHHTTCCEEEECCCHH------HHHHHHHHHG
T ss_pred HHHhcCCEEEECCCHH------HHHHHHHHHH
Confidence 4578999999999975 5677777765
No 155
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=60.32 E-value=22 Score=29.24 Aligned_cols=33 Identities=12% Similarity=0.019 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQV 40 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l 40 (203)
||+||||+..+ .++..+.+.+++ .|+++..++-
T Consensus 5 ~~~kiLI~g~g------~~a~~i~~aa~~-~G~~~v~v~~ 37 (446)
T 3ouz_A 5 EIKSILIANRG------EIALRALRTIKE-MGKKAICVYS 37 (446)
T ss_dssp CCCEEEECCCH------HHHHHHHHHHHH-TTCEEEEEEE
T ss_pred ccceEEEECCC------HHHHHHHHHHHH-cCCEEEEEEc
Confidence 45778885432 256666677777 6988887754
No 156
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=59.69 E-value=8.8 Score=30.23 Aligned_cols=36 Identities=11% Similarity=0.137 Sum_probs=27.0
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEE
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLW 38 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~ 38 (203)
|+|++||+-...+.....++.+.+.+.+ .|.++.+.
T Consensus 4 m~ki~iI~n~~~~~~~~~~~~l~~~L~~-~g~~v~~~ 39 (307)
T 1u0t_A 4 HRSVLLVVHTGRDEATETARRVEKVLGD-NKIALRVL 39 (307)
T ss_dssp -CEEEEEESSSGGGGSHHHHHHHHHHHT-TTCEEEEE
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHH-CCCEEEEe
Confidence 5789988876566666788888888888 68877654
No 157
>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12
Probab=59.44 E-value=13 Score=25.31 Aligned_cols=48 Identities=10% Similarity=-0.004 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCCccHH
Q 028841 16 VEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAA 87 (203)
Q Consensus 16 T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~~~~~ 87 (203)
+..+++.+++.+.+..+.++.++|+++. -.-+|.+||+|..-.-.+-+
T Consensus 3 ~~~l~~~i~~al~dkKa~DI~vlDv~~~------------------------s~~~DyfVIatg~S~rqv~A 50 (125)
T 2o5a_A 3 NQELLQLAVNAVDDKKAEQVVALNMKGI------------------------SLIADFFLICHGNSEKQVQA 50 (125)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEECBTT------------------------BC--CEEEEEEESSHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEEcCCC------------------------CcccCEEEEEEcCCHHHHHH
Confidence 3567777887777656779999999864 23469999998765444333
No 158
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=58.83 E-value=16 Score=29.37 Aligned_cols=39 Identities=18% Similarity=0.179 Sum_probs=30.0
Q ss_pred ceEEEEEcCC-cchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 3 TKVYIVYYSM-YGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 3 ~kilii~~S~-~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
+||+++..+. .|-.+..+..+++.+.+ .|++++++-...
T Consensus 41 mkIl~v~~~~~~GG~~~~~~~l~~~L~~-~G~~v~v~~~~~ 80 (416)
T 2x6q_A 41 RSFVHVNSTSFGGGVAEILHSLVPLLRS-IGIEARWFVIEG 80 (416)
T ss_dssp CEEEEEESCSSSSTHHHHHHHHHHHHHH-TTCEEEEEECCC
T ss_pred cEEEEEeCCCCCCCHHHHHHHHHHHHHh-CCCeEEEEEccC
Confidence 4899988775 46677778788888887 699998877654
No 159
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=57.66 E-value=5 Score=27.18 Aligned_cols=71 Identities=7% Similarity=-0.070 Sum_probs=33.4
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCC-Chh--hhhhcCeeEEec
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPII-TPN--ELAEADGFVFGF 78 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~-~~~--~l~~aD~iiigs 78 (203)
|++++|+ |. |. +...+++.+.+ .|.++.++|...................|..+. ..+ .+.++|.+|+.+
T Consensus 6 ~~~v~I~-G~--G~---iG~~la~~L~~-~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~ 78 (141)
T 3llv_A 6 RYEYIVI-GS--EA---AGVGLVRELTA-AGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITG 78 (141)
T ss_dssp CCSEEEE-CC--SH---HHHHHHHHHHH-TTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECC
T ss_pred CCEEEEE-CC--CH---HHHHHHHHHHH-CCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEec
Confidence 3456665 43 32 44445555555 588999998643221111111100001111110 011 245789999999
Q ss_pred c
Q 028841 79 P 79 (203)
Q Consensus 79 P 79 (203)
|
T Consensus 79 ~ 79 (141)
T 3llv_A 79 S 79 (141)
T ss_dssp S
T ss_pred C
Confidence 8
No 160
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=56.08 E-value=71 Score=24.98 Aligned_cols=69 Identities=14% Similarity=0.125 Sum_probs=35.2
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCc--eEEEEEcCCCCcHHHhccCCC-CCCCCCCCCChh-hhhhcCeeEEec
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGV--EAKLWQVPETLPEEVLGKMSA-PPKSDVPIITPN-ELAEADGFVFGF 78 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~--~v~~~~l~~~~~~~~~~~~~~-~~~~d~~~~~~~-~l~~aD~iiigs 78 (203)
+||.|| | .|+ |...++..+.+ .|. +|..+|..........+.... ....+ ..+ .+.++|.||++.
T Consensus 34 ~kI~II-G--~G~---mG~slA~~l~~-~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~----~~~~~~~~aDvVilav 102 (314)
T 3ggo_A 34 QNVLIV-G--VGF---MGGSFAKSLRR-SGFKGKIYGYDINPESISKAVDLGIIDEGTTS----IAKVEDFSPDFVMLSS 102 (314)
T ss_dssp SEEEEE-S--CSH---HHHHHHHHHHH-TTCCSEEEEECSCHHHHHHHHHTTSCSEEESC----TTGGGGGCCSEEEECS
T ss_pred CEEEEE-e--eCH---HHHHHHHHHHh-CCCCCEEEEEECCHHHHHHHHHCCCcchhcCC----HHHHhhccCCEEEEeC
Confidence 466665 4 232 44455555555 576 777776543211111111000 00111 123 478999999999
Q ss_pred cccC
Q 028841 79 PTRF 82 (203)
Q Consensus 79 P~y~ 82 (203)
|...
T Consensus 103 p~~~ 106 (314)
T 3ggo_A 103 PVRT 106 (314)
T ss_dssp CGGG
T ss_pred CHHH
Confidence 9863
No 161
>2wmy_A WZB, putative acid phosphatase WZB; hydrolase; 2.21A {Escherichia coli}
Probab=56.04 E-value=19 Score=25.08 Aligned_cols=77 Identities=12% Similarity=0.003 Sum_probs=39.2
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCC---CcHH----HhccCCCCCCCCCCC-CChhhhhhcC
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPET---LPEE----VLGKMSAPPKSDVPI-ITPNELAEAD 72 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~---~~~~----~~~~~~~~~~~d~~~-~~~~~l~~aD 72 (203)
||+|||+|...+..- ..+|+.+.+.+.. ++++.--=+... .++. ++....-......+. .....+.++|
T Consensus 7 mm~~VLFVC~gN~cR-SpmAEal~r~~~~--~~~v~SAGt~~~~g~~~~p~a~~~l~e~Gid~~~~~ar~l~~~~~~~~D 83 (150)
T 2wmy_A 7 MFDSILVICTGNICR-SPIGERLLRRLLP--SKKINSAGVGALVDHTADESAIRVAEKNGLCLKGHRGTKFTSALARQYD 83 (150)
T ss_dssp CCCEEEEEESSSSSH-HHHHHHHHHHHCT--TSEEEEEETTCCTTCCCCHHHHHHHHHTTCCCTTCCCCBCCHHHHTTCS
T ss_pred hcCEEEEEcCCchHH-HHHHHHHHHHhcC--CCEEEeccccCCCCCCCCHHHHHHHHHcCCCccCCcccCCCHHHhccCC
Confidence 567888887665554 4588888887653 445444333221 1111 111111111111111 1245677888
Q ss_pred eeEEeccc
Q 028841 73 GFVFGFPT 80 (203)
Q Consensus 73 ~iiigsP~ 80 (203)
.||.-...
T Consensus 84 lIi~m~~~ 91 (150)
T 2wmy_A 84 LLLVMEYS 91 (150)
T ss_dssp EEEESCHH
T ss_pred EEEEcCHH
Confidence 88877654
No 162
>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}
Probab=55.94 E-value=31 Score=26.89 Aligned_cols=119 Identities=13% Similarity=0.078 Sum_probs=56.3
Q ss_pred CCceEEEEE-cCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecc
Q 028841 1 MATKVYIVY-YSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFP 79 (203)
Q Consensus 1 Mm~kilii~-~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP 79 (203)
|.+||.+|= +.+ | ..||..+.+ .|+++..+|......+...+. .....+ ...+.+..+|.||+.-|
T Consensus 4 Ms~kIgfIGLG~M-G--~~mA~~L~~-----~G~~V~v~dr~~~~~~~l~~~-G~~~~~----s~~e~~~~~dvvi~~l~ 70 (297)
T 4gbj_A 4 MSEKIAFLGLGNL-G--TPIAEILLE-----AGYELVVWNRTASKAEPLTKL-GATVVE----NAIDAITPGGIVFSVLA 70 (297)
T ss_dssp CCCEEEEECCSTT-H--HHHHHHHHH-----TTCEEEEC-------CTTTTT-TCEECS----SGGGGCCTTCEEEECCS
T ss_pred CCCcEEEEecHHH-H--HHHHHHHHH-----CCCeEEEEeCCHHHHHHHHHc-CCeEeC----CHHHHHhcCCceeeecc
Confidence 656887773 333 2 235665544 588999888654322111110 000011 11345678999999887
Q ss_pred ccCCccHHHHHHHH-HHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCc
Q 028841 80 TRFGMMAAQFKAFL-DATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYT 147 (203)
Q Consensus 80 ~y~~~~~~~~k~~l-d~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~ 147 (203)
.. ......+ +.+.. ...+++. +.-.+.. .... ..++.+.+...|..++..+..
T Consensus 71 ~~-----~~~~~v~~~~~~~----~~~~~~i---iid~sT~--~p~~-~~~~~~~~~~~g~~~ldapVs 124 (297)
T 4gbj_A 71 DD-----AAVEELFSMELVE----KLGKDGV---HVSMSTI--SPET-SRQLAQVHEWYGAHYVGAPIF 124 (297)
T ss_dssp SH-----HHHHHHSCHHHHH----HHCTTCE---EEECSCC--CHHH-HHHHHHHHHHTTCEEEECCEE
T ss_pred ch-----hhHHHHHHHHHHh----hcCCCeE---EEECCCC--ChHH-HHHHHHHHHhcCCceecCCcC
Confidence 52 3333222 11110 0123332 2222221 1222 355778888899999987765
No 163
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=55.58 E-value=17 Score=25.92 Aligned_cols=100 Identities=15% Similarity=0.120 Sum_probs=47.8
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhc---cCCCCCCCCCCCCChhh--hhhcCeeEEe
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLG---KMSAPPKSDVPIITPNE--LAEADGFVFG 77 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~---~~~~~~~~d~~~~~~~~--l~~aD~iiig 77 (203)
+||+|+.+......+ +-...+.++. .|++++++......... .. ........+. ..++ ..++|+||+.
T Consensus 10 ~~v~il~~~g~~~~e--~~~~~~~l~~-ag~~v~~vs~~~~~v~~-~~~~~~~g~~v~~~~---~~~~~~~~~~D~livp 82 (190)
T 2vrn_A 10 KKIAILAADGVEEIE--LTSPRAAIEA-AGGTTELISLEPGEIQS-MKGDIEPQEKYRVDH---VVSEVQVSDYDGLLLP 82 (190)
T ss_dssp CEEEEECCTTCBHHH--HHHHHHHHHH-TTCEEEEEESSSSEEEE-EETTTEEEEEEECSE---EGGGCCGGGCSEEEEC
T ss_pred CEEEEEeCCCCCHHH--HHHHHHHHHH-CCCEEEEEecCCCcccc-ccccccCCcEEeCCC---ChhhCChhhCCEEEEC
Confidence 578887654322222 2223445555 57888888765432100 00 0000000010 1122 3578999886
Q ss_pred ccc---cCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 78 FPT---RFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 78 sP~---y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
... +.....+.+..||.+.. -.+|+++.++++
T Consensus 83 GG~~~~~~~~~~~~l~~~l~~~~-------~~gk~i~aiC~G 117 (190)
T 2vrn_A 83 GGTVNPDKLRLEEGAMKFVRDMY-------DAGKPIAAICHG 117 (190)
T ss_dssp CCTHHHHHHTTCHHHHHHHHHHH-------HTTCCEEEC-CT
T ss_pred CCchhHHHHhhCHHHHHHHHHHH-------HcCCEEEEECHh
Confidence 532 11122355666666653 367887777764
No 164
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=55.55 E-value=14 Score=26.16 Aligned_cols=39 Identities=18% Similarity=-0.002 Sum_probs=20.6
Q ss_pred CCceEEEEEcC--------CcchHHHHHHHHHHhcccCCCceEEEEEc
Q 028841 1 MATKVYIVYYS--------MYGHVEKLAEEIKKGASSVEGVEAKLWQV 40 (203)
Q Consensus 1 Mm~kilii~~S--------~~g~T~~la~~i~~~~~~~~g~~v~~~~l 40 (203)
|+.|+.||..+ ...|+..+++.+.+.+++ .|+++..+.+
T Consensus 4 m~~~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~-~G~~v~~~~i 50 (167)
T 2g2c_A 4 MHIKSAIIVVSDRISTGTRENKALPLLQRLMSDELQD-YSYELISEVV 50 (167)
T ss_dssp CEEEEEEEEECHHHHHTSSCCCHHHHHHHHHCC-----CEEEEEEEEE
T ss_pred CccEEEEEEECCcccCCceeccHHHHHHHhHHhHHHH-CCCEEeEEEE
Confidence 44588777655 134667776664333555 5766654443
No 165
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=55.38 E-value=5.8 Score=25.55 Aligned_cols=15 Identities=20% Similarity=0.166 Sum_probs=10.6
Q ss_pred hhhhcCeeEEecccc
Q 028841 67 ELAEADGFVFGFPTR 81 (203)
Q Consensus 67 ~l~~aD~iiigsP~y 81 (203)
.+..+|.||..+|..
T Consensus 66 ~~~~~d~vi~~~~~~ 80 (118)
T 3ic5_A 66 ALGGFDAVISAAPFF 80 (118)
T ss_dssp HTTTCSEEEECSCGG
T ss_pred HHcCCCEEEECCCch
Confidence 456788888888743
No 166
>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A
Probab=54.92 E-value=13 Score=27.95 Aligned_cols=67 Identities=19% Similarity=0.254 Sum_probs=33.6
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecccc
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR 81 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y 81 (203)
||.|| |. | .+...++..+.+ .|.++.++|..........+........+ ..+.+.++|.||+.+|.+
T Consensus 5 ~i~ii-G~--G---~mG~~~a~~l~~-~g~~v~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~D~Vi~~v~~~ 71 (259)
T 2ahr_A 5 KIGII-GV--G---KMASAIIKGLKQ-TPHELIISGSSLERSKEIAEQLALPYAMS----HQDLIDQVDLVILGIKPQ 71 (259)
T ss_dssp EEEEE-CC--S---HHHHHHHHHHTT-SSCEEEEECSSHHHHHHHHHHHTCCBCSS----HHHHHHTCSEEEECSCGG
T ss_pred EEEEE-CC--C---HHHHHHHHHHHh-CCCeEEEECCCHHHHHHHHHHcCCEeeCC----HHHHHhcCCEEEEEeCcH
Confidence 77775 32 3 244455555555 56677776643221111111101111111 134567899999999954
No 167
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=54.83 E-value=21 Score=27.09 Aligned_cols=46 Identities=9% Similarity=-0.067 Sum_probs=26.3
Q ss_pred hhhhhcCeeEEeccccCCcc--HHHHHHHHHHhcccccccCCCCCceEEEEecC
Q 028841 66 NELAEADGFVFGFPTRFGMM--AAQFKAFLDATGGLWRTQQLAGKPAGMFYSTG 117 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~--~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g 117 (203)
+.+..+|.||..++...... -...+++++.+.. ..-+++..+++++
T Consensus 61 ~~~~~~d~vi~~a~~~~~~~~~~~~~~~l~~aa~~------~gv~~iv~~Ss~~ 108 (289)
T 3e48_A 61 EAFKGMDTVVFIPSIIHPSFKRIPEVENLVYAAKQ------SGVAHIIFIGYYA 108 (289)
T ss_dssp HHTTTCSEEEECCCCCCSHHHHHHHHHHHHHHHHH------TTCCEEEEEEESC
T ss_pred HHHhCCCEEEEeCCCCccchhhHHHHHHHHHHHHH------cCCCEEEEEcccC
Confidence 45678899998876543321 1345667776631 1225555555554
No 168
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=54.69 E-value=16 Score=26.51 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=17.8
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCC-----ceEEEEE
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEG-----VEAKLWQ 39 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g-----~~v~~~~ 39 (203)
||+||-+ ..||...+.+.+.+ .| +++++++
T Consensus 2 ~I~iid~-~~g~~~s~~~~l~~-----~G~~~~~~~~~~~~ 36 (201)
T 1gpw_B 2 RIGIISV-GPGNIMNLYRGVKR-----ASENFEDVSIELVE 36 (201)
T ss_dssp EEEEECC-SSSCCHHHHHHHHH-----HSTTBSSCEEEEEC
T ss_pred EEEEEec-CCchHHHHHHHHHH-----cCCCCCceEEEEEC
Confidence 7888843 34566666665543 24 5677654
No 169
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=54.58 E-value=21 Score=28.52 Aligned_cols=35 Identities=14% Similarity=0.081 Sum_probs=22.6
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
|+||+|+.+. ..++.++..+++ .|+++..++....
T Consensus 1 M~~Ililg~g------~~g~~~~~a~~~-~G~~v~~~~~~~~ 35 (380)
T 3ax6_A 1 MKKIGIIGGG------QLGKMMTLEAKK-MGFYVIVLDPTPR 35 (380)
T ss_dssp CCEEEEECCS------HHHHHHHHHHHH-TTCEEEEEESSTT
T ss_pred CCEEEEECCC------HHHHHHHHHHHH-CCCEEEEEeCCCC
Confidence 4688887653 234455555666 6888888887543
No 170
>2fek_A Low molecular weight protein-tyrosine- phosphatase WZB; phosphate binding, hydrolase; NMR {Escherichia coli K12}
Probab=54.21 E-value=20 Score=25.50 Aligned_cols=77 Identities=9% Similarity=-0.014 Sum_probs=39.7
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCC---CcHH----HhccCCCCCCCCCCC-CChhhhhhcC
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPET---LPEE----VLGKMSAPPKSDVPI-ITPNELAEAD 72 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~---~~~~----~~~~~~~~~~~d~~~-~~~~~l~~aD 72 (203)
||+|||+|+..+..- ..||+.+.+.+.. ++++.--=+... .++. ++....-......+. ...+.+.++|
T Consensus 21 mm~~VLFVCtgN~cR-SpmAEal~r~~~~--~~~v~SAGt~~~~g~~~~p~a~~vl~e~Gid~s~~~sr~l~~~~~~~~D 97 (167)
T 2fek_A 21 MFNNILVVCVGNICR-SPTAERLLQRYHP--ELKVESAGLGALVGKGADPTAISVAAEHQLSLEGHCARQISRRLCRNYD 97 (167)
T ss_dssp CCCEEEEEESSSSSH-HHHHHHHHHHHCT--TCEEEEEETTCCTTCCCCHHHHHHHHHTTCCCTTCCCCBCCHHHHHHSS
T ss_pred ccCeEEEEcCCcHHH-HHHHHHHHHHhcC--CeEEEeeecCCCCCCCCCHHHHHHHHHcCCCccCCcCccCCHHHhccCC
Confidence 677898887665544 4688888887654 345444333221 1111 111111111111111 1345778899
Q ss_pred eeEEeccc
Q 028841 73 GFVFGFPT 80 (203)
Q Consensus 73 ~iiigsP~ 80 (203)
.||.-...
T Consensus 98 lIitM~~~ 105 (167)
T 2fek_A 98 LILTMEKR 105 (167)
T ss_dssp EEEESCHH
T ss_pred EEEEcCHH
Confidence 99887653
No 171
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=53.73 E-value=24 Score=27.16 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=20.5
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
+||.|| |. |+ |...++..+.. .|.+|.++|...
T Consensus 5 ~kV~VI-Ga--G~---mG~~iA~~la~-~G~~V~l~d~~~ 37 (283)
T 4e12_A 5 TNVTVL-GT--GV---LGSQIAFQTAF-HGFAVTAYDINT 37 (283)
T ss_dssp CEEEEE-CC--SH---HHHHHHHHHHH-TTCEEEEECSSH
T ss_pred CEEEEE-CC--CH---HHHHHHHHHHh-CCCeEEEEeCCH
Confidence 467776 43 32 44445555555 688999988754
No 172
>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}
Probab=53.61 E-value=31 Score=26.50 Aligned_cols=68 Identities=15% Similarity=0.138 Sum_probs=34.8
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCc---eEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecc
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGV---EAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFP 79 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~---~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP 79 (203)
+||.|| |. |+ |...++..+.+ .|. ++.++|..........+........+ ..+.+.++|.||++.|
T Consensus 4 ~~I~iI-G~--G~---mG~aia~~l~~-~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~----~~~~~~~aDvVilav~ 72 (280)
T 3tri_A 4 SNITFI-GG--GN---MARNIVVGLIA-NGYDPNRICVTNRSLDKLDFFKEKCGVHTTQD----NRQGALNADVVVLAVK 72 (280)
T ss_dssp SCEEEE-SC--SH---HHHHHHHHHHH-TTCCGGGEEEECSSSHHHHHHHHTTCCEEESC----HHHHHSSCSEEEECSC
T ss_pred CEEEEE-cc--cH---HHHHHHHHHHH-CCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCC----hHHHHhcCCeEEEEeC
Confidence 477765 33 32 44444445444 455 67777754432222221101100111 1456789999999998
Q ss_pred cc
Q 028841 80 TR 81 (203)
Q Consensus 80 ~y 81 (203)
.+
T Consensus 73 p~ 74 (280)
T 3tri_A 73 PH 74 (280)
T ss_dssp GG
T ss_pred HH
Confidence 63
No 173
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=53.45 E-value=41 Score=27.59 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=21.2
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQV 40 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l 40 (203)
||+||||+.. | .++..+.+.+++ .|+++..++-
T Consensus 1 m~k~ilI~g~---g---~~~~~~~~a~~~-~G~~vv~v~~ 33 (451)
T 1ulz_A 1 MVNKVLVANR---G---EIAVRIIRACKE-LGIPTVAIYN 33 (451)
T ss_dssp CCSSEEECCC---H---HHHHHHHHHHHH-HTCCEEEEEC
T ss_pred CCceEEEECC---c---HHHHHHHHHHHH-cCCeEEEEec
Confidence 8889998743 2 234445555555 5888887764
No 174
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=53.39 E-value=14 Score=29.50 Aligned_cols=37 Identities=19% Similarity=0.281 Sum_probs=28.8
Q ss_pred eEEEEEcC----CcchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 4 KVYIVYYS----MYGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 4 kilii~~S----~~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
||++|..+ ..|-.+..+..+++.+.+ .|++|+++-..
T Consensus 4 kIl~v~~~~~p~~~gG~~~~~~~la~~L~~-~G~~V~v~~~~ 44 (439)
T 3fro_A 4 KVLLLGFEFLPVKVGGLAEALTAISEALAS-LGHEVLVFTPS 44 (439)
T ss_dssp EEEEECSCCTTSCSSSHHHHHHHHHHHHHH-TTCEEEEEEEC
T ss_pred EEEEEecccCCcccCCHHHHHHHHHHHHHH-CCCeEEEEecC
Confidence 89998754 246677778888888888 79999988743
No 175
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=53.05 E-value=54 Score=22.74 Aligned_cols=48 Identities=8% Similarity=0.001 Sum_probs=29.9
Q ss_pred hhhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 65 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+..+|++|+....-...-...++.|++.+... ...++++.++++-
T Consensus 89 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK 136 (189)
T 2gf9_A 89 TAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTY----SWDNAQVILVGNK 136 (189)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEEC
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEEC
Confidence 45678999999987665433334455666665321 2357787777763
No 176
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}
Probab=52.76 E-value=53 Score=27.55 Aligned_cols=63 Identities=19% Similarity=0.038 Sum_probs=33.0
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
|||| +|-|-.|...+.+.|.+ .|.+|..++-....... +. -|..+...+.+...|.||-....
T Consensus 149 ~VLV-----TGatG~IG~~l~~~L~~-~G~~V~~l~R~~~~~~~-v~-------~d~~~~~~~~l~~~D~Vih~A~~ 211 (516)
T 3oh8_A 149 TVAI-----TGSRGLVGRALTAQLQT-GGHEVIQLVRKEPKPGK-RF-------WDPLNPASDLLDGADVLVHLAGE 211 (516)
T ss_dssp EEEE-----ESTTSHHHHHHHHHHHH-TTCEEEEEESSSCCTTC-EE-------CCTTSCCTTTTTTCSEEEECCCC
T ss_pred EEEE-----ECCCCHHHHHHHHHHHH-CCCEEEEEECCCCCccc-ee-------ecccchhHHhcCCCCEEEECCCC
Confidence 7776 23333455555555555 57788877654432111 00 01111123456789999876543
No 177
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=52.73 E-value=25 Score=25.86 Aligned_cols=100 Identities=13% Similarity=0.078 Sum_probs=56.8
Q ss_pred CceEEEEEcCC-cchHHHHHHHHHHhcccCCCceEEEEEcCCCCc---HHHhcc----CCCCCCCCCCCCChhhhhhcCe
Q 028841 2 ATKVYIVYYSM-YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLP---EEVLGK----MSAPPKSDVPIITPNELAEADG 73 (203)
Q Consensus 2 m~kilii~~S~-~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~---~~~~~~----~~~~~~~d~~~~~~~~l~~aD~ 73 (203)
|.++.++||++ .|.|..+.+.+.....+ +..+-++... .+. ..+... ..+.+..+..+ ..+.....|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~--~~kvl~~kp~-~D~R~~~~i~S~~g~~~~A~~~~~~~d-~~~~~~~~Dv 94 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIA--QYKCLVIKYA-KDTRYSSSFCTHDRNTMEALPACLLRD-VAQEALGVAV 94 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT--TCCEEEEEET-TCCCGGGSCCHHHHHHSEEEEESSGGG-GHHHHHTCSE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEccc-cCccchhhhhhccCCcccceecCCHHH-HHHhccCCCE
Confidence 56899999997 69998899988776654 5677777633 111 111000 00000011111 1334567888
Q ss_pred eEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 74 FVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 74 iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
|+|==--++ +. .-.|++.+. -.||++.+.+--
T Consensus 95 IlIDEaQFf---k~-~ve~~~~L~-------~~gk~VI~~GL~ 126 (195)
T 1w4r_A 95 IGIDEGQFF---PD-IVEFCEAMA-------NAGKTVIVAALD 126 (195)
T ss_dssp EEESSGGGC---TT-HHHHHHHHH-------HTTCEEEEEEES
T ss_pred EEEEchhhh---HH-HHHHHHHHH-------HCCCeEEEEecc
Confidence 877655555 22 455666653 368888777653
No 178
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=52.53 E-value=14 Score=25.70 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=21.3
Q ss_pred CCceEEEEEc-CCcchHHHHHHHHHHhccc
Q 028841 1 MATKVYIVYY-SMYGHVEKLAEEIKKGASS 29 (203)
Q Consensus 1 Mm~kilii~~-S~~g~T~~la~~i~~~~~~ 29 (203)
||.+++++.| |..|.| .+++.+++.+..
T Consensus 1 m~~~~i~l~G~~GsGKS-T~a~~La~~l~~ 29 (178)
T 1qhx_A 1 MTTRMIILNGGSSAGKS-GIVRCLQSVLPE 29 (178)
T ss_dssp CCCCEEEEECCTTSSHH-HHHHHHHHHSSS
T ss_pred CCceEEEEECCCCCCHH-HHHHHHHHhcCC
Confidence 7777777777 457877 589999998753
No 179
>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}
Probab=52.27 E-value=34 Score=20.23 Aligned_cols=38 Identities=5% Similarity=0.028 Sum_probs=28.2
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
++.+++.+.-+..+.+...+.+.+.+ .+.+++++++..
T Consensus 3 ~~~~f~~~~C~~C~~~~~~l~~~~~~-~~~~~~~~~v~~ 40 (80)
T 2k8s_A 3 SKAIFYHAGCPVCVSAEQAVANAIDP-SKYTVEIVHLGT 40 (80)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHSCT-TTEEEEEEETTT
T ss_pred ceEEEeCCCCCchHHHHHHHHHHHHh-cCCeEEEEEecC
Confidence 45555555568898888888877777 678888888864
No 180
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=52.27 E-value=28 Score=21.58 Aligned_cols=37 Identities=16% Similarity=0.239 Sum_probs=21.9
Q ss_pred CceEEEEEcCCcchHH-----HHHHHHHHhcccCCCceEEEEEcCC
Q 028841 2 ATKVYIVYYSMYGHVE-----KLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 2 m~kilii~~S~~g~T~-----~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
|++|.|...|..+..+ .-|+.+.+. .|++++.+|+..
T Consensus 1 M~~v~ly~~~~C~~c~~~~~~~~ak~~L~~----~~i~~~~~di~~ 42 (93)
T 1t1v_A 1 MSGLRVYSTSVTGSREIKSQQSEVTRILDG----KRIQYQLVDISQ 42 (93)
T ss_dssp CCCEEEEECSSCSCHHHHHHHHHHHHHHHH----TTCCCEEEETTS
T ss_pred CCCEEEEEcCCCCCchhhHHHHHHHHHHHH----CCCceEEEECCC
Confidence 4466665555556663 334444443 477888888864
No 181
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=52.03 E-value=23 Score=26.89 Aligned_cols=36 Identities=14% Similarity=0.101 Sum_probs=24.4
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
|+|+.||.++..|--+.+|+.+++ .|..|-+.+..+
T Consensus 1 MnK~vlVTGas~GIG~aia~~la~-----~Ga~V~~~~~~~ 36 (247)
T 3ged_A 1 MNRGVIVTGGGHGIGKQICLDFLE-----AGDKVCFIDIDE 36 (247)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHH-----TTCEEEEEESCH
T ss_pred CCCEEEEecCCCHHHHHHHHHHHH-----CCCEEEEEeCCH
Confidence 567777887766655555555544 688998888754
No 182
>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}
Probab=51.95 E-value=36 Score=26.46 Aligned_cols=115 Identities=12% Similarity=0.119 Sum_probs=56.4
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccC
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRF 82 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~ 82 (203)
+||.|| +. |+ |...++..+.+ .|.++.++|..........+. ......+ ..+.+.++|.||+..|..
T Consensus 10 ~~IgiI-G~--G~---mG~~~A~~l~~-~G~~V~~~dr~~~~~~~~~~~-g~~~~~~----~~e~~~~aDvVi~~vp~~- 76 (306)
T 3l6d_A 10 FDVSVI-GL--GA---MGTIMAQVLLK-QGKRVAIWNRSPGKAAALVAA-GAHLCES----VKAALSASPATIFVLLDN- 76 (306)
T ss_dssp CSEEEE-CC--SH---HHHHHHHHHHH-TTCCEEEECSSHHHHHHHHHH-TCEECSS----HHHHHHHSSEEEECCSSH-
T ss_pred CeEEEE-CC--CH---HHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHC-CCeecCC----HHHHHhcCCEEEEEeCCH-
Confidence 477776 32 32 33444444444 577888887543221211111 0000111 134578899999999853
Q ss_pred CccHHHHHHHHH--HhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCC
Q 028841 83 GMMAAQFKAFLD--ATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 83 ~~~~~~~k~~ld--~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~ 145 (203)
..++..+. .+.. ..+|+.+ +.++.... .. ...+.+.+...|..++..+
T Consensus 77 ----~~~~~v~~~~~l~~-----~~~g~iv--id~st~~~-~~---~~~l~~~~~~~g~~~vdap 126 (306)
T 3l6d_A 77 ----HATHEVLGMPGVAR-----ALAHRTI--VDYTTNAQ-DE---GLALQGLVNQAGGHYVKGM 126 (306)
T ss_dssp ----HHHHHHHTSTTHHH-----HTTTCEE--EECCCCCT-TH---HHHHHHHHHHTTCEEEEEE
T ss_pred ----HHHHHHhcccchhh-----ccCCCEE--EECCCCCH-HH---HHHHHHHHHHcCCeEEecc
Confidence 34555553 2211 2345443 22322222 21 2345566777788777643
No 183
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=51.46 E-value=8.3 Score=23.00 Aligned_cols=40 Identities=10% Similarity=0.070 Sum_probs=20.9
Q ss_pred CCceEEEEEcCCcchHHHHH---HHHHHhcccCCCceEEEEEcCC
Q 028841 1 MATKVYIVYYSMYGHVEKLA---EEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la---~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
||.+++.++.+.-+..+.+. +.+++.... ++.+..+|+.+
T Consensus 1 mm~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~ 43 (85)
T 1nho_A 1 MVVNIEVFTSPTCPYCPMAIEVVDEAKKEFGD--KIDVEKIDIMV 43 (85)
T ss_dssp CCCCEEEESCSSSCCSTTHHHHHHHHHHHHCS--SCCEEEECTTT
T ss_pred CeEEEEEEECCCCcchHHHHHHHHHHHHHhcC--CeEEEEEECCC
Confidence 77666666655445444444 444444432 45666666543
No 184
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=51.08 E-value=36 Score=22.50 Aligned_cols=67 Identities=21% Similarity=0.196 Sum_probs=37.3
Q ss_pred EEEE-EcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCc--HHHhccCCCCCCCCCCCCChhhhhhcCeeEEecccc
Q 028841 5 VYIV-YYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLP--EEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR 81 (203)
Q Consensus 5 ilii-~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~--~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y 81 (203)
++|| ++|..+.. ...++.+++ .|.++.+++++...| .+.+ .+.+..++.||+.==.+
T Consensus 16 v~iv~~Gs~~~~a----~eA~~~L~~-~Gi~v~vi~~r~~~P~d~~~l---------------~~~~~~~~~vvvvE~~~ 75 (118)
T 3ju3_A 16 ITFVTWGSQKGPI----LDVIEDLKE-EGISANLLYLKMFSPFPTEFV---------------KNVLSSANLVIDVESNY 75 (118)
T ss_dssp EEEEEEGGGHHHH----HHHHHHHHH-TTCCEEEEEECSSCSCCHHHH---------------HHHHTTCSCCCCCCCCC
T ss_pred EEEEEECccHHHH----HHHHHHHHH-CCCceEEEEECeEecCCHHHH---------------HHHHcCCCEEEEEECCC
Confidence 4444 56655444 444445555 688999999987644 1111 23456666666543333
Q ss_pred CCccHHHHHH
Q 028841 82 FGMMAAQFKA 91 (203)
Q Consensus 82 ~~~~~~~~k~ 91 (203)
.|.+...++.
T Consensus 76 ~G~l~~~i~~ 85 (118)
T 3ju3_A 76 TAQAAQMIKL 85 (118)
T ss_dssp CCCHHHHHHH
T ss_pred CCcHHHHHHH
Confidence 4666665554
No 185
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=50.32 E-value=23 Score=27.68 Aligned_cols=38 Identities=8% Similarity=0.114 Sum_probs=26.1
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
+||+++..+..|. ...+..+++.+.+ .|++|.++...+
T Consensus 7 mkIl~~~~~~gG~-~~~~~~la~~L~~-~G~~V~v~~~~~ 44 (364)
T 1f0k_A 7 KRLMVMAGGTGGH-VFPGLAVAHHLMA-QGWQVRWLGTAD 44 (364)
T ss_dssp CEEEEECCSSHHH-HHHHHHHHHHHHT-TTCEEEEEECTT
T ss_pred cEEEEEeCCCccc-hhHHHHHHHHHHH-cCCEEEEEecCC
Confidence 4788886544343 4455667777777 689999887655
No 186
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=49.00 E-value=82 Score=23.66 Aligned_cols=41 Identities=5% Similarity=0.032 Sum_probs=28.7
Q ss_pred ceEEEEEcC-CcchHHHHHHHHHHhcccCCCceEEEEEcCCCC
Q 028841 3 TKVYIVYYS-MYGHVEKLAEEIKKGASSVEGVEAKLWQVPETL 44 (203)
Q Consensus 3 ~kilii~~S-~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~ 44 (203)
++|.+|..+ .+.....+.+.+.+.+++ .|+++.++...+.+
T Consensus 5 ~~I~~i~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~~ 46 (305)
T 3g1w_A 5 ETYMMITFQSGMDYWKRCLKGFEDAAQA-LNVTVEYRGAAQYD 46 (305)
T ss_dssp CEEEEEESSTTSTHHHHHHHHHHHHHHH-HTCEEEEEECSSSC
T ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHH-cCCEEEEeCCCcCC
Confidence 467777655 356677889999999888 68888775433333
No 187
>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*
Probab=48.22 E-value=95 Score=24.12 Aligned_cols=121 Identities=11% Similarity=0.161 Sum_probs=64.1
Q ss_pred CceEEEEE-cCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 2 ATKVYIVY-YSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 2 m~kilii~-~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
|+||.+|= +.+. ..||+.+.+ .|+++.++|......+...+. .....+ ...+....+|.||..-|.
T Consensus 3 M~kIgfIGlG~MG---~~mA~~L~~-----~G~~v~v~dr~~~~~~~l~~~-Ga~~a~----s~~e~~~~~dvv~~~l~~ 69 (300)
T 3obb_A 3 MKQIAFIGLGHMG---APMATNLLK-----AGYLLNVFDLVQSAVDGLVAA-GASAAR----SARDAVQGADVVISMLPA 69 (300)
T ss_dssp CCEEEEECCSTTH---HHHHHHHHH-----TTCEEEEECSSHHHHHHHHHT-TCEECS----SHHHHHTTCSEEEECCSC
T ss_pred cCEEEEeeehHHH---HHHHHHHHh-----CCCeEEEEcCCHHHHHHHHHc-CCEEcC----CHHHHHhcCCceeecCCc
Confidence 56887763 3332 246666654 588999988754322222211 111111 113556789999998885
Q ss_pred cCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCc
Q 028841 81 RFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYT 147 (203)
Q Consensus 81 y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~ 147 (203)
+..++..+.....+. ....+|+. +.-++.. .... ..++.+.+...|..++.-+++
T Consensus 70 -----~~~v~~V~~~~~g~~-~~~~~g~i---iId~sT~--~p~~-~~~~a~~~~~~G~~~lDaPVs 124 (300)
T 3obb_A 70 -----SQHVEGLYLDDDGLL-AHIAPGTL---VLECSTI--APTS-ARKIHAAARERGLAMLDAPVS 124 (300)
T ss_dssp -----HHHHHHHHHSSSSST-TSCCC-CE---EEECSCC--CHHH-HHHHHHHHHTTTCEEEECCEE
T ss_pred -----hHHHHHHHhchhhhh-hcCCCCCE---EEECCCC--CHHH-HHHHHHHHHHcCCEEEecCCC
Confidence 356666665432110 01123333 3322221 2222 455778888899999987654
No 188
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}
Probab=48.05 E-value=1.1e+02 Score=25.33 Aligned_cols=16 Identities=25% Similarity=0.183 Sum_probs=13.6
Q ss_pred hhhhcCeeEEeccccC
Q 028841 67 ELAEADGFVFGFPTRF 82 (203)
Q Consensus 67 ~l~~aD~iiigsP~y~ 82 (203)
.+.++|.||+..|+..
T Consensus 75 a~~~aDvViiaVptp~ 90 (450)
T 3gg2_A 75 AVPEADIIFIAVGTPA 90 (450)
T ss_dssp HGGGCSEEEECCCCCB
T ss_pred HHhcCCEEEEEcCCCc
Confidence 4789999999998874
No 189
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=48.00 E-value=17 Score=28.94 Aligned_cols=34 Identities=12% Similarity=0.026 Sum_probs=21.2
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
||||+|+-++. ....++..+++ .|+++.++|-..
T Consensus 1 MK~I~ilGgg~------~g~~~~~~Ak~-~G~~vv~vd~~~ 34 (363)
T 4ffl_A 1 MKTICLVGGKL------QGFEAAYLSKK-AGMKVVLVDKNP 34 (363)
T ss_dssp CCEEEEECCSH------HHHHHHHHHHH-TTCEEEEEESCT
T ss_pred CCEEEEECCCH------HHHHHHHHHHH-CCCEEEEEeCCC
Confidence 67888875442 22334445555 689999998644
No 190
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=47.65 E-value=11 Score=25.47 Aligned_cols=61 Identities=10% Similarity=0.098 Sum_probs=29.2
Q ss_pred HHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCC--CC-hhhhhhcCeeEEeccccC
Q 028841 21 EEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPI--IT-PNELAEADGFVFGFPTRF 82 (203)
Q Consensus 21 ~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~--~~-~~~l~~aD~iiigsP~y~ 82 (203)
..+++.+.+ .|.++.++|......+............|... .. ...+.++|.+|+.+|.-.
T Consensus 20 ~~la~~L~~-~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~ 83 (140)
T 3fwz_A 20 SLLGEKLLA-SDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGY 83 (140)
T ss_dssp HHHHHHHHH-TTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHH
T ss_pred HHHHHHHHH-CCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChH
Confidence 334444444 57899999875432221111100000111111 00 123578999999998743
No 191
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=47.23 E-value=72 Score=22.44 Aligned_cols=116 Identities=11% Similarity=0.130 Sum_probs=62.5
Q ss_pred CceEEEEEcCC-----------cch--HHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhh
Q 028841 2 ATKVYIVYYSM-----------YGH--VEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNEL 68 (203)
Q Consensus 2 m~kilii~~S~-----------~g~--T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l 68 (203)
|+||+|+++.. +|+ -+.+.+.+.+...+ .|++++.+.-... .+.++. ..+..
T Consensus 7 m~~IlvlNGPNLNlLG~REP~iYG~~Tl~di~~~l~~~a~~-~g~~~~~~QSN~E--geLId~------------Ih~a~ 71 (153)
T 3lwz_A 7 KFHILLLNGPNLNLLGTREPEKYGYTTLAEIVSQLEIQAQG-MDVALSHLQSNAE--HALIDS------------IHQAR 71 (153)
T ss_dssp CEEEEEEECTTGGGTTTSSHHHHCCCCHHHHHHHHHHHHHH-TTEEEEEEECSCH--HHHHHH------------HHHHT
T ss_pred cCeEEEEcCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHH-cCCEEEEEecCCH--HHHHHH------------HHHhh
Confidence 66999999984 342 44455666666666 6888877664321 111110 01233
Q ss_pred hhcCeeEEeccccCCccHHHHHHHHHHhcccc---------cc------cCCCCCceEEEEecCCCCCChHHHHHHHHHH
Q 028841 69 AEADGFVFGFPTRFGMMAAQFKAFLDATGGLW---------RT------QQLAGKPAGMFYSTGSQGGGQETTALTAITQ 133 (203)
Q Consensus 69 ~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~---------~~------~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~ 133 (203)
.++|+|||=.--|-..-- .+++.|..+..++ .. ..+...-.++++-.|. .++..++..+.+.
T Consensus 72 ~~~dgiiINpgA~THtSv-AlrDAl~~~~~P~VEVHiSNi~aRE~FRh~S~~s~~a~GvI~G~G~--~gY~lAl~~~~~~ 148 (153)
T 3lwz_A 72 GNTDFILINPAAFTHTSV-ALRDALLGVQIPFIEIHLSNVHAREPFRHHSYLSDIAVGVICGLGA--DGYNFALQAAVNR 148 (153)
T ss_dssp TTCSEEEEECGGGGGTCH-HHHHHHHHHTCCEEEEESSCGGGSCGGGGCCSSGGGSSEEEESSTT--HHHHHHHHHHHHH
T ss_pred hcCceEEEccccceechH-HHHHHHHhcCCCEEEEEcCCccccchhhhcccccccceEEEEecCh--hHHHHHHHHHHHH
Confidence 568999998777753322 3566665553222 11 2234455566654443 3455555555555
Q ss_pred HH
Q 028841 134 LV 135 (203)
Q Consensus 134 l~ 135 (203)
+.
T Consensus 149 l~ 150 (153)
T 3lwz_A 149 LS 150 (153)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 192
>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat iron-sulfur cluster, biosynthetic protein; 2.10A {Pyrococcus horikoshii} PDB: 3lzc_A
Probab=47.21 E-value=35 Score=27.85 Aligned_cols=43 Identities=21% Similarity=0.081 Sum_probs=35.2
Q ss_pred ceEEEEEcCCcc-hHHHHHHHHHHhcccCCCceEEEEEcCCCCcH
Q 028841 3 TKVYIVYYSMYG-HVEKLAEEIKKGASSVEGVEAKLWQVPETLPE 46 (203)
Q Consensus 3 ~kilii~~S~~g-~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~ 46 (203)
+++.||.++..+ ++..+++.+.+.+++ .|.++.++-+.+.+|.
T Consensus 265 ~~~GIIvgTLg~Q~~~~~~~~L~~ll~~-~Gkk~y~i~vg~inp~ 308 (378)
T 3lzd_A 265 KKFGVIVSIKKGQLRLAEAKRIVKLLKK-HGREARLIVMNDVNYH 308 (378)
T ss_dssp CEEEEEEECSTTTCCHHHHHHHHHHHHH-TTCEEEEEEESSCCHH
T ss_pred CEEEEEEeCCccCCCHHHHHHHHHHHHH-cCCcEEEEEeCCCCHH
Confidence 467888898654 567899999999998 7999999999887654
No 193
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*
Probab=47.13 E-value=41 Score=23.87 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=29.8
Q ss_pred eEEEEEcCCcc-hHHHHHHHHHHhcccCCCc-eEEEEEcCCC
Q 028841 4 KVYIVYYSMYG-HVEKLAEEIKKGASSVEGV-EAKLWQVPET 43 (203)
Q Consensus 4 kilii~~S~~g-~T~~la~~i~~~~~~~~g~-~v~~~~l~~~ 43 (203)
|+.||...-+. -|..|.+...+.+.+ .|+ +++++.++-.
T Consensus 19 ri~IV~arfn~~I~~~Ll~gA~~~l~~-~G~~~i~v~~VPGa 59 (160)
T 2c92_A 19 RLAIVASSWHGKICDALLDGARKVAAG-CGLDDPTVVRVLGA 59 (160)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHHHH-TTCSCCEEEEESSG
T ss_pred EEEEEEEeCcHHHHHHHHHHHHHHHHH-cCCCceEEEECCcH
Confidence 78888877554 588899988888888 677 6777777654
No 194
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=46.60 E-value=31 Score=22.57 Aligned_cols=37 Identities=11% Similarity=0.090 Sum_probs=24.7
Q ss_pred EEEEEcC-CcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 5 VYIVYYS-MYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 5 ilii~~S-~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
.+++|++ .-+..+.+...+.+...+ .+++++.+|+.+
T Consensus 31 ~vv~y~~~~C~~C~~a~~~L~~l~~e-~~i~~~~vDId~ 68 (107)
T 2fgx_A 31 KLVVYGREGCHLCEEMIASLRVLQKK-SWFELEVINIDG 68 (107)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHHHHH-SCCCCEEEETTT
T ss_pred EEEEEeCCCChhHHHHHHHHHHHHHh-cCCeEEEEECCC
Confidence 3455555 457777766666665555 578888899875
No 195
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=46.48 E-value=74 Score=22.38 Aligned_cols=48 Identities=6% Similarity=-0.011 Sum_probs=31.1
Q ss_pred hhhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 65 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+..+|++|+....-...-...++.|++.+... ...+.++.++++-
T Consensus 75 ~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK 122 (206)
T 2bcg_Y 75 SSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRY----ATSTVLKLLVGNK 122 (206)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH----SCTTCEEEEEEEC
T ss_pred HHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEEC
Confidence 45678999999987766654445566677666421 2346777776653
No 196
>3rss_A Putative uncharacterized protein; unknown function, ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET: NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A* 3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A* 3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A* 3rte_A* 3rtg_A* 3ru2_A* 3ru3_A*
Probab=46.43 E-value=46 Score=28.23 Aligned_cols=88 Identities=11% Similarity=0.122 Sum_probs=50.1
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHh------ccCCCCCCCCCCCCChhhhhhcCeeE-
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVL------GKMSAPPKSDVPIITPNELAEADGFV- 75 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~------~~~~~~~~~d~~~~~~~~l~~aD~ii- 75 (203)
++|+|+.++ ||+--=+=.+++.|.. .|++|+++-+.+....++. .....+..++ .....+..+|.||
T Consensus 53 ~~v~VlcG~--GNNGGDGlv~AR~L~~-~G~~V~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~dliVD 126 (502)
T 3rss_A 53 YRFLVLCGG--GNNGGDGFVVARNLLG-VVKDVLVVFLGKKKTPDCEYNYGLYKKFGGKVVEQ---FEPSILNEFDVVVD 126 (502)
T ss_dssp CEEEEEECS--SHHHHHHHHHHHHHTT-TSSEEEEEECCSSCCHHHHHHHHHHHHTTCCEESC---CCGGGGGGCSEEEE
T ss_pred CEEEEEECC--CCCHHHHHHHHHHHHH-CCCeEEEEEECCCCCHHHHHHHHHHHhCCCceecc---cccccCCCCCEEEE
Confidence 368888887 3333223333444455 6889998887654222221 1111111110 0123466788886
Q ss_pred --EeccccCCccHHHHHHHHHHhc
Q 028841 76 --FGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 76 --igsP~y~~~~~~~~k~~ld~~~ 97 (203)
||+-. .+.+.+.++.+++++.
T Consensus 127 alfG~Gl-~~~l~~~~~~~i~~iN 149 (502)
T 3rss_A 127 AIFGTGL-RGEITGEYAEIINLVN 149 (502)
T ss_dssp ESCSTTC-CSCCCHHHHHHHHHHH
T ss_pred eCccCCC-CCCCcHHHHHHHHHHH
Confidence 66654 5678899999999885
No 197
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=46.05 E-value=36 Score=26.77 Aligned_cols=41 Identities=24% Similarity=0.161 Sum_probs=28.4
Q ss_pred CC-ceEEEEEcCCcc---hHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 1 MA-TKVYIVYYSMYG---HVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 1 Mm-~kilii~~S~~g---~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
|+ +||+|+++.... -+-.-+..+.+.+.+ .|+++..+++..
T Consensus 1 m~~~~v~vl~gG~s~E~~vs~~s~~~v~~al~~-~g~~v~~i~~~~ 45 (343)
T 1e4e_A 1 MNRIKVAILFGGCSEEHDVSVKSAIEIAANINK-EKYEPLYIGITK 45 (343)
T ss_dssp -CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECT
T ss_pred CCCcEEEEEeCCCCCCcchhHHHHHHHHHHhhh-cCCEEEEEEEcC
Confidence 53 489999986442 233346778888888 799999988754
No 198
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=45.85 E-value=18 Score=28.33 Aligned_cols=37 Identities=14% Similarity=0.291 Sum_probs=27.9
Q ss_pred eEEEEEcC--CcchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 4 KVYIVYYS--MYGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 4 kilii~~S--~~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
||+++..+ +.|-.+..+..+++.+.+ .|++|.++...
T Consensus 2 kIl~i~~~~~~~gG~~~~~~~l~~~L~~-~G~~V~v~~~~ 40 (374)
T 2iw1_A 2 IVAFCLYKYFPFGGLQRDFMRIASTVAA-RGHHVRVYTQS 40 (374)
T ss_dssp CEEEECSEECTTCHHHHHHHHHHHHHHH-TTCCEEEEESE
T ss_pred eEEEEEeecCCCcchhhHHHHHHHHHHh-CCCeEEEEecC
Confidence 89888654 456666777778888887 68999988764
No 199
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=45.56 E-value=64 Score=24.78 Aligned_cols=39 Identities=18% Similarity=0.168 Sum_probs=29.0
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
+++.++|.+...|+....+.+.+.+.+ .|.++.......
T Consensus 141 k~vgvi~~~~~~~s~~~~~~~~~~~~~-~g~~~v~~~~~~ 179 (302)
T 3lkv_A 141 KSIGVVYNPGEANAVSLMELLKLSAAK-HGIKLVEATALK 179 (302)
T ss_dssp CEEEEEECTTCHHHHHHHHHHHHHHHH-TTCEEEEEECSS
T ss_pred CEEEEEeCCCcccHHHHHHHHHHHHHH-cCCEEEEEecCC
Confidence 578899988777777778888888877 687776655544
No 200
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=45.39 E-value=41 Score=26.57 Aligned_cols=38 Identities=8% Similarity=-0.095 Sum_probs=25.3
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
|+|++||+-...|+. +..+.+.+.+.+ .|.++++....
T Consensus 29 ~~~~~vi~Np~sg~~-~~~~~i~~~l~~-~g~~~~~~~t~ 66 (332)
T 2bon_A 29 FPASLLILNGKSTDN-LPLREAIMLLRE-EGMTIHVRVTW 66 (332)
T ss_dssp -CCEEEEECSSSTTC-HHHHHHHHHHHT-TTCCEEEEECC
T ss_pred cceEEEEECCCCCCC-chHHHHHHHHHH-cCCcEEEEEec
Confidence 568888775544433 556778888887 68888776543
No 201
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=45.30 E-value=37 Score=29.19 Aligned_cols=32 Identities=6% Similarity=0.036 Sum_probs=22.2
Q ss_pred ceEEEEE-cCCcchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 3 TKVYIVY-YSMYGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 3 ~kilii~-~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
.+|+||- +| ++|..+++.+.+ .|+.++++...
T Consensus 8 ~~IlilD~Gs--~~~~~I~r~lre-----~Gv~~eiv~~~ 40 (556)
T 3uow_A 8 DKILVLNFGS--QYFHLIVKRLNN-----IKIFSETKDYG 40 (556)
T ss_dssp CEEEEEESSC--TTHHHHHHHHHH-----TTCCEEEEETT
T ss_pred CEEEEEECCC--ccHHHHHHHHHH-----CCCeEEEEECC
Confidence 4788884 44 558888888765 46678888653
No 202
>2wja_A Putative acid phosphatase WZB; hydrolase; 2.50A {Escherichia coli}
Probab=45.21 E-value=25 Score=25.03 Aligned_cols=77 Identities=9% Similarity=-0.009 Sum_probs=39.4
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCC---CcH-HHhc---cCCCCCCCCCCC-CChhhhhhcC
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPET---LPE-EVLG---KMSAPPKSDVPI-ITPNELAEAD 72 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~---~~~-~~~~---~~~~~~~~d~~~-~~~~~l~~aD 72 (203)
||+|||+|+..+..- ..||+.+.+.+.. ++++.--=+... .++ .... ..........+. .....+.++|
T Consensus 25 mm~~VLFVCtgNicR-SpmAEal~r~~~~--~~~v~SAGt~~~~g~~~~p~a~~vl~e~Gid~s~~~sr~l~~~~~~~~D 101 (168)
T 2wja_A 25 MFDSILVICTGNICR-SPIGERLLRRLLP--SKKINSAGVGALVDHAADESAIRVAEKNGLCLKGHRGTKFTSALARQYD 101 (168)
T ss_dssp HCSEEEEEESSSSSH-HHHHHHHHHHHST--TSEEEEEETTCCTTCCCCHHHHHC---CCCCCTTCCCCBCCHHHHTTCS
T ss_pred ccCEEEEEcCCcHHH-HHHHHHHHHHhcC--CeEEEeeecCCCCCCCCCHHHHHHHHHcCCCcccCccCCCChhHhccCC
Confidence 567899887665544 4588888887654 445444333221 111 1111 111111111111 1345778899
Q ss_pred eeEEeccc
Q 028841 73 GFVFGFPT 80 (203)
Q Consensus 73 ~iiigsP~ 80 (203)
.||.-...
T Consensus 102 lIitM~~~ 109 (168)
T 2wja_A 102 LLLVMEYS 109 (168)
T ss_dssp EEEESSHH
T ss_pred EEEEcCHH
Confidence 99887653
No 203
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=45.16 E-value=44 Score=24.28 Aligned_cols=58 Identities=12% Similarity=0.221 Sum_probs=34.7
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFG 83 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~ 83 (203)
||.|| +. |+ +...++..+.+ .|.++.+++.... .+.++|.||+..|.
T Consensus 21 ~I~ii-G~--G~---mG~~la~~l~~-~g~~V~~~~~~~~-----------------------~~~~aD~vi~av~~--- 67 (209)
T 2raf_A 21 EITIF-GK--GN---MGQAIGHNFEI-AGHEVTYYGSKDQ-----------------------ATTLGEIVIMAVPY--- 67 (209)
T ss_dssp EEEEE-CC--SH---HHHHHHHHHHH-TTCEEEEECTTCC-----------------------CSSCCSEEEECSCH---
T ss_pred EEEEE-CC--CH---HHHHHHHHHHH-CCCEEEEEcCCHH-----------------------HhccCCEEEEcCCc---
Confidence 66664 32 32 34444445544 5778887764321 35689999999983
Q ss_pred ccHHHHHHHHHHhc
Q 028841 84 MMAAQFKAFLDATG 97 (203)
Q Consensus 84 ~~~~~~k~~ld~~~ 97 (203)
..++..++.+.
T Consensus 68 ---~~~~~v~~~l~ 78 (209)
T 2raf_A 68 ---PALAALAKQYA 78 (209)
T ss_dssp ---HHHHHHHHHTH
T ss_pred ---HHHHHHHHHHH
Confidence 34566666653
No 204
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}
Probab=44.82 E-value=7 Score=29.54 Aligned_cols=72 Identities=11% Similarity=0.115 Sum_probs=36.6
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCC--ChhhhhhcCeeEEec
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPII--TPNELAEADGFVFGF 78 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~--~~~~l~~aD~iiigs 78 (203)
||++|+| +|-|..+...+.+.+.+ .|.+|..++-..... ....-....-|+.+. ..+.+...|.||...
T Consensus 1 M~~~ilV-----tGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~---~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a 71 (267)
T 3ay3_A 1 MLNRLLV-----TGAAGGVGSAIRPHLGT-LAHEVRLSDIVDLGA---AEAHEEIVACDLADAQAVHDLVKDCDGIIHLG 71 (267)
T ss_dssp CEEEEEE-----ESTTSHHHHHHGGGGGG-TEEEEEECCSSCCCC---CCTTEEECCCCTTCHHHHHHHHTTCSEEEECC
T ss_pred CCceEEE-----ECCCCHHHHHHHHHHHh-CCCEEEEEeCCCccc---cCCCccEEEccCCCHHHHHHHHcCCCEEEECC
Confidence 7767766 34445677777777777 576766655432210 000000011122111 123456789999876
Q ss_pred ccc
Q 028841 79 PTR 81 (203)
Q Consensus 79 P~y 81 (203)
...
T Consensus 72 ~~~ 74 (267)
T 3ay3_A 72 GVS 74 (267)
T ss_dssp SCC
T ss_pred cCC
Confidence 543
No 205
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=44.57 E-value=36 Score=21.44 Aligned_cols=37 Identities=14% Similarity=0.232 Sum_probs=23.2
Q ss_pred CCceEEEEEcCC-cchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 1 MATKVYIVYYSM-YGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 1 Mm~kilii~~S~-~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
||..-++||+++ -+...++-+.+ +. .|++++.+|+.+
T Consensus 1 M~ta~I~vYs~~~Cp~C~~aK~~L-~~----~gi~y~~idi~~ 38 (92)
T 2lqo_A 1 MVTAALTIYTTSWCGYCLRLKTAL-TA----NRIAYDEVDIEH 38 (92)
T ss_dssp CCSSCEEEEECTTCSSHHHHHHHH-HH----TTCCCEEEETTT
T ss_pred CCCCcEEEEcCCCCHhHHHHHHHH-Hh----cCCceEEEEcCC
Confidence 665445556654 47776643333 32 578899999865
No 206
>3soz_A ORF 245 protein, cytoplasmic protein STM1381; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.60A {Salmonella enterica subsp}
Probab=44.51 E-value=22 Score=27.16 Aligned_cols=46 Identities=15% Similarity=0.086 Sum_probs=30.2
Q ss_pred HHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 20 AEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 20 a~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
++.+.+.++. .+++|+.+...+.. . .+|. ..+.+.++|+||+.-.-
T Consensus 35 ~~~~~~aL~~-~~~~V~~i~~~~~~-----~--------~fP~-~~~~L~~yDvIIl~d~~ 80 (248)
T 3soz_A 35 ADYLLSCLRQ-GNIDVDYMPAHIVQ-----T--------RFPQ-TAEALACYDAIVISDIG 80 (248)
T ss_dssp SHHHHHHHTT-TTCEEEEEETTHHH-----H--------SCCC-SHHHHHTCSEEEEESCC
T ss_pred HHHHHHHHhc-CCceeEEeCchhhh-----h--------hCCC-ChHHHhcCCEEEEcCCC
Confidence 4556677776 68899988764321 0 1221 25789999999999443
No 207
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=44.45 E-value=23 Score=23.56 Aligned_cols=41 Identities=15% Similarity=-0.009 Sum_probs=26.4
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
|+++||+-+.. +.++...++...+.++. .+.++.++.+.+.
T Consensus 1 M~~~ILv~vD~-s~~s~~al~~A~~la~~-~~a~l~ll~v~~~ 41 (147)
T 3hgm_A 1 MFNRIMVPVDG-SKGAVKALEKGVGLQQL-TGAELYILCVFKH 41 (147)
T ss_dssp CCSEEEEECCS-BHHHHHHHHHHHHHHHH-HCCEEEEEEEECC
T ss_pred CCceEEEEeCC-CHHHHHHHHHHHHHHHh-cCCEEEEEEEecC
Confidence 88899887642 23455556655555554 4668888888654
No 208
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=44.29 E-value=25 Score=29.03 Aligned_cols=39 Identities=13% Similarity=0.122 Sum_probs=29.3
Q ss_pred ceEEEEEcC--------------CcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 3 TKVYIVYYS--------------MYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 3 ~kilii~~S--------------~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
+||++|..+ ..|-.+..+..+++.+.+ .|++|+++....
T Consensus 8 MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~-~G~~V~v~~~~~ 60 (499)
T 2r60_A 8 KHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAE-MGVQVDIITRRI 60 (499)
T ss_dssp CEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHH-TTCEEEEEEECC
T ss_pred ceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHh-cCCeEEEEeCCC
Confidence 389998753 246677788888888888 699999887643
No 209
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=43.86 E-value=18 Score=27.77 Aligned_cols=24 Identities=13% Similarity=0.044 Sum_probs=16.9
Q ss_pred hhhcCeeEEeccccCCccHHHHHHHHHHhc
Q 028841 68 LAEADGFVFGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 68 l~~aD~iiigsP~y~~~~~~~~k~~ld~~~ 97 (203)
+.++|.||+..|.+. ++..++.+.
T Consensus 72 ~~~~d~vi~~v~~~~------~~~v~~~l~ 95 (316)
T 2ew2_A 72 NEQVDLIIALTKAQQ------LDAMFKAIQ 95 (316)
T ss_dssp SCCCSEEEECSCHHH------HHHHHHHHG
T ss_pred CCCCCEEEEEecccc------HHHHHHHHH
Confidence 348999999999762 455555554
No 210
>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}
Probab=43.60 E-value=52 Score=25.75 Aligned_cols=69 Identities=16% Similarity=0.151 Sum_probs=37.8
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCC-ceEEEEEcCCCCc---HHHhc---cCCCCCCC-CCCCCChhhhhhcC
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEG-VEAKLWQVPETLP---EEVLG---KMSAPPKS-DVPIITPNELAEAD 72 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g-~~v~~~~l~~~~~---~~~~~---~~~~~~~~-d~~~~~~~~l~~aD 72 (203)
||+||.|| |. | .|...++..+.+ .| .+|.++|.....+ ....+ .... .. + ..+.+.++|
T Consensus 23 M~m~IgvI-G~--G---~mG~~lA~~L~~-~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~--~~~s----~~e~~~~aD 89 (317)
T 4ezb_A 23 MMTTIAFI-GF--G---EAAQSIAGGLGG-RNAARLAAYDLRFNDPAASGALRARAAELGV--EPLD----DVAGIACAD 89 (317)
T ss_dssp SCCEEEEE-CC--S---HHHHHHHHHHHT-TTCSEEEEECGGGGCTTTHHHHHHHHHHTTC--EEES----SGGGGGGCS
T ss_pred cCCeEEEE-Cc--c---HHHHHHHHHHHH-cCCCeEEEEeCCCccccchHHHHHHHHHCCC--CCCC----HHHHHhcCC
Confidence 45577775 32 3 244445555555 58 8899888764211 01111 0011 11 1 135678899
Q ss_pred eeEEeccccC
Q 028841 73 GFVFGFPTRF 82 (203)
Q Consensus 73 ~iiigsP~y~ 82 (203)
.||+..|...
T Consensus 90 vVi~avp~~~ 99 (317)
T 4ezb_A 90 VVLSLVVGAA 99 (317)
T ss_dssp EEEECCCGGG
T ss_pred EEEEecCCHH
Confidence 9999999754
No 211
>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}
Probab=43.41 E-value=49 Score=26.43 Aligned_cols=26 Identities=19% Similarity=0.373 Sum_probs=19.3
Q ss_pred hhhhhcCeeEEeccccCCccHHHHHHHHHHhc
Q 028841 66 NELAEADGFVFGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~ 97 (203)
+.+.++|.||++.|.+ .++..++.+.
T Consensus 99 ea~~~aDvVilav~~~------~~~~vl~~i~ 124 (375)
T 1yj8_A 99 SVINDADLLIFIVPCQ------YLESVLASIK 124 (375)
T ss_dssp HHHTTCSEEEECCCHH------HHHHHHHHHT
T ss_pred HHHcCCCEEEEcCCHH------HHHHHHHHHh
Confidence 4477899999999974 4666666664
No 212
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=43.32 E-value=27 Score=28.64 Aligned_cols=37 Identities=14% Similarity=0.128 Sum_probs=29.5
Q ss_pred eEEEEEcC--C---cchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 4 KVYIVYYS--M---YGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 4 kilii~~S--~---~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
||++|..+ + .|-.+..+..+++.+.+ .|++|+++-..
T Consensus 2 kIl~v~~~~~P~~~~GG~~~~~~~la~~L~~-~G~~V~vi~~~ 43 (485)
T 1rzu_A 2 NVLSVSSEIYPLIKTGGLADVVGALPIALEA-HGVRTRTLIPG 43 (485)
T ss_dssp EEEEECSCBTTTBCSSHHHHHHHHHHHHHHT-TTCEEEEEEEC
T ss_pred eEEEEeeeeccccccccHHHHHHHHHHHHHH-cCCeEEEEecc
Confidence 89998653 2 46678888888999988 79999998764
No 213
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=42.80 E-value=32 Score=22.14 Aligned_cols=39 Identities=15% Similarity=0.214 Sum_probs=21.3
Q ss_pred ceEEEEEcC-Ccc-hHHHHHHHHHHhcccCC-Cc-eEEEEEcCC
Q 028841 3 TKVYIVYYS-MYG-HVEKLAEEIKKGASSVE-GV-EAKLWQVPE 42 (203)
Q Consensus 3 ~kilii~~S-~~g-~T~~la~~i~~~~~~~~-g~-~v~~~~l~~ 42 (203)
+|++|+..| +++ .....+-.++..+.+ . |. ++.++-..+
T Consensus 2 ~k~~ii~~~~p~~~~~~~~al~~a~~~~~-~~g~~~v~vff~~d 44 (117)
T 1jx7_A 2 QKIVIVANGAPYGSESLFNSLRLAIALRE-QESNLDLRLFLMSD 44 (117)
T ss_dssp CEEEEEECCCTTTCSHHHHHHHHHHHHHH-HCTTCEEEEEECGG
T ss_pred cEEEEEEcCCCCCcHHHHHHHHHHHHHHh-cCCCccEEEEEEch
Confidence 477777655 554 233333344444444 4 76 887776654
No 214
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=42.27 E-value=78 Score=22.34 Aligned_cols=39 Identities=21% Similarity=0.312 Sum_probs=30.8
Q ss_pred eEEEEEcCCcc-hHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 4 KVYIVYYSMYG-HVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilii~~S~~g-~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
|++||.+.-+. -|..+.+-..+.+.+ .|.+++++.++-.
T Consensus 14 ri~IV~arfn~~I~~~Ll~gA~~~l~~-~G~~i~v~~VPGa 53 (157)
T 2i0f_A 14 HLLIVEARFYDDLADALLDGAKAALDE-AGATYDVVTVPGA 53 (157)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHH-TTCEEEEEEESSG
T ss_pred EEEEEEEeCcHHHHHHHHHHHHHHHHH-cCCCeEEEECCcH
Confidence 78888877554 588899988888888 6878888888654
No 215
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}
Probab=41.96 E-value=55 Score=24.96 Aligned_cols=115 Identities=12% Similarity=0.058 Sum_probs=57.0
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccCC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFG 83 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~~ 83 (203)
||.|| |. |+ |...++..+.+ .|.+|.++|......+...+. .....++ ..+.+.++|.||+..|.-
T Consensus 3 ~i~iI-G~--G~---mG~~~a~~l~~-~G~~V~~~dr~~~~~~~~~~~-g~~~~~~----~~~~~~~aDvvi~~vp~~-- 68 (287)
T 3pef_A 3 KFGFI-GL--GI---MGSAMAKNLVK-AGCSVTIWNRSPEKAEELAAL-GAERAAT----PCEVVESCPVTFAMLADP-- 68 (287)
T ss_dssp EEEEE-CC--SH---HHHHHHHHHHH-TTCEEEEECSSGGGGHHHHHT-TCEECSS----HHHHHHHCSEEEECCSSH--
T ss_pred EEEEE-ee--cH---HHHHHHHHHHH-CCCeEEEEcCCHHHHHHHHHC-CCeecCC----HHHHHhcCCEEEEEcCCH--
Confidence 67665 32 32 34444444444 578888887654433322211 1000111 134568899999999842
Q ss_pred ccHHHHHHHH---HHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCC
Q 028841 84 MMAAQFKAFL---DATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 84 ~~~~~~k~~l---d~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~ 145 (203)
..++..+ +.+... ..+|+.+ +.++.. ... +...+.+.+...|..+++.+
T Consensus 69 ---~~~~~v~~~~~~l~~~----l~~~~~v--i~~st~---~~~-~~~~~~~~~~~~g~~~~~~p 120 (287)
T 3pef_A 69 ---AAAEEVCFGKHGVLEG----IGEGRGY--VDMSTV---DPA-TSQRIGVAVVAKGGRFLEAP 120 (287)
T ss_dssp ---HHHHHHHHSTTCHHHH----CCTTCEE--EECSCC---CHH-HHHHHHHHHHHTTCEEEECC
T ss_pred ---HHHHHHHcCcchHhhc----CCCCCEE--EeCCCC---CHH-HHHHHHHHHHHhCCEEEECC
Confidence 3455555 333211 1234432 233221 122 23446667777788887644
No 216
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5
Probab=41.75 E-value=35 Score=26.65 Aligned_cols=14 Identities=14% Similarity=0.095 Sum_probs=11.9
Q ss_pred hhcCeeEEeccccC
Q 028841 69 AEADGFVFGFPTRF 82 (203)
Q Consensus 69 ~~aD~iiigsP~y~ 82 (203)
.+.|+|++++|...
T Consensus 62 ~~~D~V~i~tp~~~ 75 (323)
T 1xea_A 62 YGVDAVMIHAATDV 75 (323)
T ss_dssp GCCSEEEECSCGGG
T ss_pred cCCCEEEEECCchh
Confidence 57899999999654
No 217
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=41.60 E-value=26 Score=28.69 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=29.3
Q ss_pred eEEEEEcC--C---cchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 4 KVYIVYYS--M---YGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 4 kilii~~S--~---~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
||++|..+ + .|-.+..+..+++.+.+ .|++|+++-..
T Consensus 2 kIl~v~~~~~P~~~~GG~~~~~~~la~~L~~-~G~~V~vi~~~ 43 (485)
T 2qzs_A 2 QVLHVCSEMFPLLKTGGLADVIGALPAAQIA-DGVDARVLLPA 43 (485)
T ss_dssp EEEEECSCBTTTBCSSHHHHHHHHHHHHHHH-TTCEEEEEEEC
T ss_pred eEEEEeeeccccccCCcHHHHHHHHHHHHHH-cCCEEEEEecC
Confidence 89998754 2 46678888888888888 79999998764
No 218
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D
Probab=41.38 E-value=95 Score=23.14 Aligned_cols=87 Identities=8% Similarity=0.034 Sum_probs=41.1
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCC--CceEEEEEcCCCCcHHHhccCCCCCCCCCCC--CChhhhhhcCeeEEecc
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVE--GVEAKLWQVPETLPEEVLGKMSAPPKSDVPI--ITPNELAEADGFVFGFP 79 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~--g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~--~~~~~l~~aD~iiigsP 79 (203)
+|+| +|-|-.+...+.+.+.+ . |.+|..++-............-....-|+.+ ...+.+...|.||..+.
T Consensus 2 ~ilV-----tGatG~iG~~l~~~L~~-~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 75 (287)
T 2jl1_A 2 SIAV-----TGATGQLGGLVIQHLLK-KVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISG 75 (287)
T ss_dssp CEEE-----TTTTSHHHHHHHHHHTT-TSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred eEEE-----EcCCchHHHHHHHHHHH-hCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCC
Confidence 5665 34444566666666665 4 7788877754332221111000000112211 11234567899998765
Q ss_pred ccCCc--cHHHHHHHHHHh
Q 028841 80 TRFGM--MAAQFKAFLDAT 96 (203)
Q Consensus 80 ~y~~~--~~~~~k~~ld~~ 96 (203)
..... --...+++++.+
T Consensus 76 ~~~~~~~n~~~~~~l~~a~ 94 (287)
T 2jl1_A 76 PHYDNTLLIVQHANVVKAA 94 (287)
T ss_dssp CCSCHHHHHHHHHHHHHHH
T ss_pred CCcCchHHHHHHHHHHHHH
Confidence 43221 012335556655
No 219
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=40.97 E-value=48 Score=26.72 Aligned_cols=39 Identities=5% Similarity=-0.050 Sum_probs=30.4
Q ss_pred eEEEEEcCCc---chHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 4 KVYIVYYSMY---GHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 4 kilii~~S~~---g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
||+|++|..+ .-+-.=+..+.+.+.+ .++++..+++...
T Consensus 6 ~v~vl~GG~S~E~evSl~Sa~~v~~~l~~-~~~~v~~i~i~~~ 47 (372)
T 3tqt_A 6 HISVLCGGQSTEHEISIQSAKNIVNTLDA-AKYLISVIFIDHV 47 (372)
T ss_dssp EEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECTT
T ss_pred EEEEEeccCCCccHhHHHHHHHHHHHHhh-cCceEEEEEECCC
Confidence 6999998653 3466667888899988 7999999998753
No 220
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=40.95 E-value=55 Score=24.82 Aligned_cols=24 Identities=8% Similarity=0.048 Sum_probs=17.9
Q ss_pred hhhhcCeeEEeccccCCccHHHHHHHHHHhc
Q 028841 67 ELAEADGFVFGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 67 ~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~ 97 (203)
.+.++|.|||.||. .++.|++.+.
T Consensus 63 ~l~~~d~vifTS~n-------aV~~~~~~l~ 86 (269)
T 3re1_A 63 ELLNYSAVIVVSKP-------AARLAIELID 86 (269)
T ss_dssp TGGGSSEEEECSHH-------HHHHHHHHHH
T ss_pred hccCCCEEEEECHH-------HHHHHHHHHH
Confidence 56889999999984 5666666654
No 221
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=40.75 E-value=16 Score=29.22 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=25.3
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEc
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQV 40 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l 40 (203)
+||+++..+..|+...++ .+++.+.+ .|.+|.++..
T Consensus 21 MrIl~~~~~~~Ghv~~~~-~La~~L~~-~GheV~v~~~ 56 (398)
T 3oti_A 21 MRVLFVSSPGIGHLFPLI-QLAWGFRT-AGHDVLIAVA 56 (398)
T ss_dssp CEEEEECCSSHHHHGGGH-HHHHHHHH-TTCEEEEEES
T ss_pred CEEEEEcCCCcchHhHHH-HHHHHHHH-CCCEEEEecc
Confidence 399998777666654433 45566666 6999999876
No 222
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=40.71 E-value=89 Score=21.65 Aligned_cols=48 Identities=6% Similarity=0.009 Sum_probs=30.4
Q ss_pred hhhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 65 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+..+|++|+....-...-...++.|++.+... ...+.++.++++-
T Consensus 88 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~----~~~~~piilv~nK 135 (191)
T 2a5j_A 88 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQH----SSSNMVIMLIGNK 135 (191)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEEC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEEC
Confidence 56788999999987765544334456666665321 2346777777663
No 223
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=40.54 E-value=52 Score=21.80 Aligned_cols=34 Identities=6% Similarity=0.029 Sum_probs=21.3
Q ss_pred EEEEcCCc-chHHHHHHHHHHhcccCCCceEEEEEcCCCC
Q 028841 6 YIVYYSMY-GHVEKLAEEIKKGASSVEGVEAKLWQVPETL 44 (203)
Q Consensus 6 lii~~S~~-g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~ 44 (203)
+.||+.++ +.+++..+.+ +. .|++++.+|+.+..
T Consensus 5 i~iY~~~~C~~c~ka~~~L-~~----~gi~~~~~di~~~~ 39 (120)
T 3fz4_A 5 LTFYEYPKCSTCRRAKAEL-DD----LAWDYDAIDIKKNP 39 (120)
T ss_dssp EEEEECSSCHHHHHHHHHH-HH----HTCCEEEEETTTSC
T ss_pred EEEEeCCCChHHHHHHHHH-HH----cCCceEEEEeccCc
Confidence 45677765 4455444443 33 47899999997754
No 224
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=40.54 E-value=35 Score=24.23 Aligned_cols=47 Identities=19% Similarity=0.188 Sum_probs=26.5
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEec
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGF 78 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigs 78 (203)
|.++|.|+... ||-..+ .+.+++ .|.++.+++. .+.+.++|+|||.-
T Consensus 1 ~~p~Igi~~~~--~~~~~~----~~~l~~-~G~~~~~~~~------------------------~~~l~~~dglil~G 47 (191)
T 2ywd_A 1 MRGVVGVLALQ--GDFREH----KEALKR-LGIEAKEVRK------------------------KEHLEGLKALIVPG 47 (191)
T ss_dssp --CCEEEECSS--SCHHHH----HHHHHT-TTCCCEEECS------------------------GGGGTTCSEEEECS
T ss_pred CCcEEEEEecC--CchHHH----HHHHHH-CCCEEEEeCC------------------------hhhhccCCEEEECC
Confidence 44577776542 444434 444445 5777776541 12466799998863
No 225
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=40.01 E-value=48 Score=26.84 Aligned_cols=39 Identities=10% Similarity=0.130 Sum_probs=30.5
Q ss_pred ceEEEEEcCCc---chHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 3 TKVYIVYYSMY---GHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 3 ~kilii~~S~~---g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
+||+|++|..+ .-+-.=+..+.+.+.+ .|+++..+++..
T Consensus 38 ~~v~vl~GG~S~E~evSl~Sa~~v~~al~~-~~~~v~~i~i~~ 79 (383)
T 3k3p_A 38 ETLVLLYGGRSAERDVSVLSAESVMRAINY-DNFLVKTYFITQ 79 (383)
T ss_dssp EEEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECT
T ss_pred CeEEEEeCCCCCcchHHHHHHHHHHHHhhh-cCCEEEEEEecC
Confidence 37999998653 3455668888899988 799999999864
No 226
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=39.90 E-value=92 Score=21.62 Aligned_cols=48 Identities=6% Similarity=-0.083 Sum_probs=31.7
Q ss_pred hhhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 65 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+..+|++|+....-...-...++.|++.+... ...++++.++++-
T Consensus 90 ~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~----~~~~~piiiv~NK 137 (192)
T 2fg5_A 90 PMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEH----GPENIVMAIAGNK 137 (192)
T ss_dssp HHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHH----SCTTCEEEEEEEC
T ss_pred HHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHh----CCCCCcEEEEEEC
Confidence 45678999999987766655445567777666421 2346777777663
No 227
>2d1p_B TUSC, hypothetical UPF0116 protein YHEM; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=39.75 E-value=42 Score=22.12 Aligned_cols=40 Identities=8% Similarity=0.116 Sum_probs=22.4
Q ss_pred CceEEEEE-cCCcchH--HHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 2 ATKVYIVY-YSMYGHV--EKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 2 m~kilii~-~S~~g~T--~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
|+|++++. .|++|+. +.-.+ ++..+.. .+.++.++-+.+-
T Consensus 1 Mkk~~~vv~~~P~g~~~~~~al~-~a~a~~a-~~~~v~vff~~DG 43 (119)
T 2d1p_B 1 MKRIAFVFSTAPHGTAAGREGLD-ALLATSA-LTDDLAVFFIADG 43 (119)
T ss_dssp CCCEEEEECSCTTTSTHHHHHHH-HHHHHHT-TCSCEEEEECGGG
T ss_pred CcEEEEEEcCCCCCcHHHHHHHH-HHHHHHh-CCCCEEEEEehHH
Confidence 56777665 5678753 33333 3333333 3568887776653
No 228
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=39.40 E-value=1.1e+02 Score=26.84 Aligned_cols=50 Identities=20% Similarity=0.243 Sum_probs=32.1
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEE-ecccc
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVF-GFPTR 81 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iii-gsP~y 81 (203)
+|+||- ...++|..+++.+.+ .|.+++++..... ..+.++|+||| +.|--
T Consensus 448 ~IlviD-~gdsf~~~l~~~l~~-----~G~~v~Vv~~d~~----------------------~~~~~~DgIIlsGGPg~ 498 (645)
T 3r75_A 448 RALIVD-AEDHFTAMIAQQLSS-----LGLATEVCGVHDA----------------------VDLARYDVVVMGPGPGD 498 (645)
T ss_dssp EEEEEE-SSCTHHHHHHHHHHH-----TTCEEEEEETTCC----------------------CCGGGCSEEEECCCSSC
T ss_pred EEEEEE-CCccHHHHHHHHHHH-----CCCEEEEEECCCc----------------------ccccCCCEEEECCCCCC
Confidence 566653 334678778777755 4678888765432 13568899999 55543
No 229
>2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A*
Probab=39.27 E-value=15 Score=26.04 Aligned_cols=39 Identities=23% Similarity=0.072 Sum_probs=24.8
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceE--EEEEcCC
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEA--KLWQVPE 42 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v--~~~~l~~ 42 (203)
||.|+.||.+.-+. ..|++...+.+.+ .|++. +++.++-
T Consensus 1 m~~ri~IV~arfn~--~~Ll~gA~~~L~~-~G~~~~i~~~~VPG 41 (156)
T 2b99_A 1 MTKKVGIVDTTFAR--VDMASIAIKKLKE-LSPNIKIIRKTVPG 41 (156)
T ss_dssp -CCEEEEEEESSCS--SCCHHHHHHHHHH-HCTTCEEEEEEESS
T ss_pred CCcEEEEEEEecch--HHHHHHHHHHHHH-cCCCCeEEEEECCc
Confidence 77799998877554 5677777777776 46543 3345543
No 230
>3rh0_A Arsenate reductase; oxidoreductase; 1.72A {Corynebacterium glutamicum}
Probab=39.13 E-value=94 Score=21.48 Aligned_cols=78 Identities=19% Similarity=0.201 Sum_probs=41.1
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCC-cH----HHhccCCCCCCCCCC-CCChhhhhhcCeeE
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETL-PE----EVLGKMSAPPKSDVP-IITPNELAEADGFV 75 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~-~~----~~~~~~~~~~~~d~~-~~~~~~l~~aD~ii 75 (203)
|+|||+|...+..- ..||+.+.+.+.. ..+++.--=+..-. ++ .++....-......+ ....+.+.++|.||
T Consensus 20 ~~~VLFVC~gN~cR-SpmAEal~~~~~~-~~~~v~SAGt~~g~~~dp~a~~vl~e~Gidis~h~ar~l~~~~~~~~DlIi 97 (148)
T 3rh0_A 20 MKSVLFVCVGNGGK-SQMAAALAQKYAS-DSVEIHSAGTKPAQGLNQLSVESIAEVGADMSQGIPKAIDPELLRTVDRVV 97 (148)
T ss_dssp CCEEEEEESSSSSH-HHHHHHHHHHHCC-TTSEEEEEESSCCSSCCHHHHHHHHHTTCCCTTCCCCBCCHHHHHHCSEEE
T ss_pred CCEEEEECCCchhH-HHHHHHHHHHhcC-CCEEEEecccCCCCCCCHHHHHHHHHcCCCcCCCeeeECCHHHhcCCCEEE
Confidence 56888887665554 4688988887764 44555544333221 11 112211111111111 11356788999998
Q ss_pred Eecccc
Q 028841 76 FGFPTR 81 (203)
Q Consensus 76 igsP~y 81 (203)
.-+...
T Consensus 98 tM~~~~ 103 (148)
T 3rh0_A 98 ILGDDA 103 (148)
T ss_dssp EESSSC
T ss_pred EecChH
Confidence 886543
No 231
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=38.84 E-value=30 Score=27.40 Aligned_cols=35 Identities=14% Similarity=-0.026 Sum_probs=24.2
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
|+||+|+.++ ..+..+.+.+++ .|+++..++....
T Consensus 1 M~~Ililg~g------~~~~~~~~a~~~-~G~~v~~~~~~~~ 35 (365)
T 2z04_A 1 MLTVGILGGG------QLGWMTILEGRK-LGFKFHVLEDKEN 35 (365)
T ss_dssp -CEEEEECCS------HHHHHHHHHHGG-GTCEEEEECSSSS
T ss_pred CCEEEEECCC------HHHHHHHHHHHH-CCCEEEEEeCCCC
Confidence 5689988654 346667777777 6889888886543
No 232
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=38.77 E-value=69 Score=23.42 Aligned_cols=47 Identities=9% Similarity=-0.021 Sum_probs=31.6
Q ss_pred hhhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEe
Q 028841 65 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYS 115 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t 115 (203)
..-+..+|++|+..-+..-.--..++.|++.+... .-.+-++.+++.
T Consensus 80 ~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~----~~~~~piilVgN 126 (216)
T 4dkx_A 80 PSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTE----RGSDVIIMLVGN 126 (216)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH----HTTSSEEEEEEE
T ss_pred HHHhccccEEEEEeecchhHHHHHHHHHHHHHHHh----cCCCCeEEEEee
Confidence 34578999999998887766556677777776422 124556666665
No 233
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=38.36 E-value=87 Score=20.86 Aligned_cols=48 Identities=6% Similarity=-0.016 Sum_probs=30.1
Q ss_pred hhhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 65 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+..+|++|+....-...-...++.|+..+... ...++++.++++-
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK 117 (170)
T 1g16_A 70 TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEH----ANDEAQLLLVGNK 117 (170)
T ss_dssp HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEEC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEEC
Confidence 55678999999987665443334456666655421 1246777777764
No 234
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}
Probab=38.32 E-value=61 Score=26.00 Aligned_cols=115 Identities=11% Similarity=0.183 Sum_probs=56.3
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhc---CeeEEecc
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEA---DGFVFGFP 79 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~a---D~iiigsP 79 (203)
+||.|| +. |+ |...++..+.+ .|.+|.++|............ ......+ ..+.+..+ |.||+..|
T Consensus 23 mkIgiI-Gl--G~---mG~~~A~~L~~-~G~~V~v~dr~~~~~~~l~~~-g~~~~~s----~~e~~~~a~~~DvVi~~vp 90 (358)
T 4e21_A 23 MQIGMI-GL--GR---MGADMVRRLRK-GGHECVVYDLNVNAVQALERE-GIAGARS----IEEFCAKLVKPRVVWLMVP 90 (358)
T ss_dssp CEEEEE-CC--SH---HHHHHHHHHHH-TTCEEEEECSCHHHHHHHHTT-TCBCCSS----HHHHHHHSCSSCEEEECSC
T ss_pred CEEEEE-Cc--hH---HHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHC-CCEEeCC----HHHHHhcCCCCCEEEEeCC
Confidence 367665 32 32 33344444444 578888887643222222111 1111111 13445677 99999999
Q ss_pred ccCCccHHHHHHHHHHhcccccccCC-CCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCC
Q 028841 80 TRFGMMAAQFKAFLDATGGLWRTQQL-AGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGY 146 (203)
Q Consensus 80 ~y~~~~~~~~k~~ld~~~~~~~~~~l-~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~ 146 (203)
.. . ++..++.+.. .+ +|+. +...++. .... ...+.+.+...|..+++.++
T Consensus 91 ~~--~----v~~vl~~l~~-----~l~~g~i---iId~st~--~~~~-~~~~~~~l~~~g~~~vdapV 141 (358)
T 4e21_A 91 AA--V----VDSMLQRMTP-----LLAANDI---VIDGGNS--HYQD-DIRRADQMRAQGITYVDVGT 141 (358)
T ss_dssp GG--G----HHHHHHHHGG-----GCCTTCE---EEECSSC--CHHH-HHHHHHHHHTTTCEEEEEEE
T ss_pred HH--H----HHHHHHHHHh-----hCCCCCE---EEeCCCC--ChHH-HHHHHHHHHHCCCEEEeCCC
Confidence 86 3 4444455432 12 2332 2222221 1111 23456667777888876543
No 235
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Probab=38.29 E-value=37 Score=20.06 Aligned_cols=38 Identities=8% Similarity=-0.032 Sum_probs=21.7
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
+|++++.+.-+..+++...+.+...+..++++..+|+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~vdi~ 39 (85)
T 1ego_A 2 QTVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIR 39 (85)
T ss_dssp EEEEECCTTSTHHHHHHHHHHHHHHHHSSCEEEEECHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEEEEecc
Confidence 56664445567777766655543322135677777764
No 236
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=38.15 E-value=21 Score=27.99 Aligned_cols=14 Identities=29% Similarity=0.325 Sum_probs=12.0
Q ss_pred hcCeeEEeccccCC
Q 028841 70 EADGFVFGFPTRFG 83 (203)
Q Consensus 70 ~aD~iiigsP~y~~ 83 (203)
+.|+|++++|....
T Consensus 63 ~~D~V~i~tp~~~h 76 (331)
T 4hkt_A 63 DIDAVVICTPTDTH 76 (331)
T ss_dssp TCCEEEECSCGGGH
T ss_pred CCCEEEEeCCchhH
Confidence 68999999998754
No 237
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=38.13 E-value=98 Score=21.38 Aligned_cols=47 Identities=13% Similarity=-0.068 Sum_probs=28.8
Q ss_pred hhhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEe
Q 028841 65 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYS 115 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t 115 (203)
...+..+|++|+..-.-...-...++.|++.+... ...++++.++++
T Consensus 92 ~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~----~~~~~piilv~n 138 (193)
T 2oil_A 92 SAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDH----AEATIVVMLVGN 138 (193)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTT----SCTTCEEEEEEE
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCeEEEEEE
Confidence 44678999999986655433334456666665421 124677777765
No 238
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=38.06 E-value=40 Score=26.63 Aligned_cols=24 Identities=8% Similarity=0.126 Sum_probs=15.9
Q ss_pred hhcCeeEEeccccCCccHHHHHHHHH
Q 028841 69 AEADGFVFGFPTRFGMMAAQFKAFLD 94 (203)
Q Consensus 69 ~~aD~iiigsP~y~~~~~~~~k~~ld 94 (203)
.+.|+|++++|.... ....+..++
T Consensus 65 ~~~D~V~i~tp~~~h--~~~~~~al~ 88 (354)
T 3db2_A 65 EDVEMVIITVPNDKH--AEVIEQCAR 88 (354)
T ss_dssp SSCCEEEECSCTTSH--HHHHHHHHH
T ss_pred CCCCEEEEeCChHHH--HHHHHHHHH
Confidence 468999999999654 233444444
No 239
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=38.04 E-value=47 Score=23.49 Aligned_cols=11 Identities=18% Similarity=0.450 Sum_probs=8.7
Q ss_pred hhhhcCeeEEe
Q 028841 67 ELAEADGFVFG 77 (203)
Q Consensus 67 ~l~~aD~iiig 77 (203)
.+.++|+||+.
T Consensus 34 ~~~~~dglil~ 44 (186)
T 2ywj_A 34 DLEGIDALIIP 44 (186)
T ss_dssp GGTTCSEEEEC
T ss_pred HhccCCEEEEC
Confidence 56778999885
No 240
>3cwc_A Putative glycerate kinase 2; structural genomics, center for structural genomics of infec diseases, csgid, IDP122, transferase; 2.23A {Salmonella typhimurium LT2}
Probab=37.88 E-value=27 Score=28.55 Aligned_cols=42 Identities=14% Similarity=0.132 Sum_probs=30.1
Q ss_pred CCceEEEEEcCCcc--hHHHHHHHHHHhcccC-CCceEEEEEcCCC
Q 028841 1 MATKVYIVYYSMYG--HVEKLAEEIKKGASSV-EGVEAKLWQVPET 43 (203)
Q Consensus 1 Mm~kilii~~S~~g--~T~~la~~i~~~~~~~-~g~~v~~~~l~~~ 43 (203)
|| ||+|.-.|-.| +...++++|++++++. .+.++..+.+.|-
T Consensus 3 ~M-kiviApDsFKgsLsA~eaa~ai~~G~~~~~p~a~~~~~P~ADG 47 (383)
T 3cwc_A 3 AM-KIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLADG 47 (383)
T ss_dssp CC-EEEECCCCBTTSCCHHHHHHHHHHHHHTTCTTSEEEECCCCCS
T ss_pred Cc-eEEEEecCCCCCcCHHHHHHHHHHHHHHhCCCCEEEEeccCCC
Confidence 35 89988888554 5788999999999874 4556666655553
No 241
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=37.79 E-value=27 Score=27.89 Aligned_cols=37 Identities=22% Similarity=0.154 Sum_probs=20.9
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEE
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQ 39 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~ 39 (203)
|.+||+|.-+-..|+..- +-++++.+.+ .|.+|.++-
T Consensus 1 M~~~i~i~~GGTgGHi~p-alala~~L~~-~g~~V~~vg 37 (365)
T 3s2u_A 1 MKGNVLIMAGGTGGHVFP-ALACAREFQA-RGYAVHWLG 37 (365)
T ss_dssp --CEEEEECCSSHHHHHH-HHHHHHHHHH-TTCEEEEEE
T ss_pred CCCcEEEEcCCCHHHHHH-HHHHHHHHHh-CCCEEEEEE
Confidence 666777654433466432 3455666666 588887764
No 242
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=37.61 E-value=62 Score=25.79 Aligned_cols=42 Identities=19% Similarity=0.172 Sum_probs=30.8
Q ss_pred CC-ceEEEEEcCCcc---hHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 1 MA-TKVYIVYYSMYG---HVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 1 Mm-~kilii~~S~~g---~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
|+ +||.|++|..++ -+-.=+..+.+.+.+ .|+++..+++...
T Consensus 1 m~~~~v~vl~GG~S~E~evSl~S~~~v~~al~~-~~~~v~~i~i~~~ 46 (364)
T 3i12_A 1 MAKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDK-TRFDVVLLGIDKA 46 (364)
T ss_dssp -CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECTT
T ss_pred CCccEEEEEeccCCCCccchHHHHHHHHHHHhh-cCCeEEEEEECCC
Confidence 53 479999986543 344567788888988 7999999998643
No 243
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=37.59 E-value=22 Score=27.53 Aligned_cols=36 Identities=14% Similarity=-0.072 Sum_probs=22.1
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEE
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLW 38 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~ 38 (203)
|+|++||+-...+....+++.+.+.+.+ .|.++.+.
T Consensus 5 mkki~ii~np~~~~~~~~~~~i~~~l~~-~g~~v~~~ 40 (292)
T 2an1_A 5 FKCIGIVGHPRHPTALTTHEMLYRWLCD-QGYEVIVE 40 (292)
T ss_dssp CCEEEEECC-------CHHHHHHHHHHH-TTCEEEEE
T ss_pred CcEEEEEEcCCCHHHHHHHHHHHHHHHH-CCCEEEEe
Confidence 4688888764455566778888888887 68877654
No 244
>2jmk_A Hypothetical protein TA0956; protein binding; NMR {Thermoplasma acidophilum} PDB: 2k24_A
Probab=37.42 E-value=66 Score=20.55 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=26.7
Q ss_pred ceEEEEEcCC-cchHHHHHHHHHHhcccCCCceEEE
Q 028841 3 TKVYIVYYSM-YGHVEKLAEEIKKGASSVEGVEAKL 37 (203)
Q Consensus 3 ~kilii~~S~-~g~T~~la~~i~~~~~~~~g~~v~~ 37 (203)
+|+.-|.+|. .+|.....+++.+..+. .|..++.
T Consensus 75 KK~mSvsFsd~~~~~K~~i~ei~kkykd-~GykvE~ 109 (111)
T 2jmk_A 75 KKLMSVSFSDIDENMKKVIKATAEKFKN-KGFKVET 109 (111)
T ss_dssp TTEEEEEECSCCTTHHHHHHHHHHHGGG-GCCEEEE
T ss_pred CeEEEEEeehhhhhHHHHHHHHHHHhhc-CCceeec
Confidence 3555566775 68999999999999998 7888764
No 245
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=37.10 E-value=26 Score=27.62 Aligned_cols=14 Identities=14% Similarity=0.074 Sum_probs=11.9
Q ss_pred hcCeeEEeccccCC
Q 028841 70 EADGFVFGFPTRFG 83 (203)
Q Consensus 70 ~aD~iiigsP~y~~ 83 (203)
+.|+|++++|....
T Consensus 64 ~~D~V~i~tp~~~h 77 (344)
T 3ezy_A 64 NVDAVLVCSSTNTH 77 (344)
T ss_dssp TCCEEEECSCGGGH
T ss_pred CCCEEEEcCCCcch
Confidence 68999999998653
No 246
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=37.07 E-value=18 Score=28.85 Aligned_cols=38 Identities=13% Similarity=0.116 Sum_probs=25.0
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
|| ||+++..+..|+...++ .+++.+.+ .|.+|.++.-.
T Consensus 15 ~M-rIl~~~~~~~gh~~~~~-~La~~L~~-~GheV~v~~~~ 52 (398)
T 4fzr_A 15 HM-RILVIAGCSEGFVMPLV-PLSWALRA-AGHEVLVAASE 52 (398)
T ss_dssp CC-EEEEECCSSHHHHGGGH-HHHHHHHH-TTCEEEEEEEG
T ss_pred ce-EEEEEcCCCcchHHHHH-HHHHHHHH-CCCEEEEEcCH
Confidence 35 89988776666644433 45566666 68899887643
No 247
>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2
Probab=36.59 E-value=22 Score=28.15 Aligned_cols=35 Identities=11% Similarity=-0.099 Sum_probs=19.1
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
||++|+| .|. |-.|...+++.+.+ .|.+|..++-.
T Consensus 23 M~~~vlV-tGa----tG~iG~~l~~~L~~-~g~~V~~~~r~ 57 (375)
T 1t2a_A 23 MRNVALI-TGI----TGQDGSYLAEFLLE-KGYEVHGIVRR 57 (375)
T ss_dssp -CCEEEE-ETT----TSHHHHHHHHHHHH-TTCEEEEEECC
T ss_pred cCcEEEE-ECC----CchHHHHHHHHHHH-CCCEEEEEECC
Confidence 5556665 343 33445555555555 57788777654
No 248
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=36.59 E-value=77 Score=24.86 Aligned_cols=37 Identities=11% Similarity=0.067 Sum_probs=25.3
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEc
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQV 40 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l 40 (203)
|+||+++.....|+...+. .+++.+.+ .|++|.++.-
T Consensus 4 M~~il~~~~~~~Ghv~~~~-~La~~L~~-~GheV~v~~~ 40 (402)
T 3ia7_A 4 QRHILFANVQGHGHVYPSL-GLVSELAR-RGHRITYVTT 40 (402)
T ss_dssp CCEEEEECCSSHHHHHHHH-HHHHHHHH-TTCEEEEEEC
T ss_pred CCEEEEEeCCCCcccccHH-HHHHHHHh-CCCEEEEEcC
Confidence 4488887665567765544 45566666 6999998764
No 249
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=36.57 E-value=1.4e+02 Score=22.60 Aligned_cols=39 Identities=13% Similarity=0.196 Sum_probs=25.9
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
.+|.++..+.......+.+.+.+.+++ .|+++.+.+..+
T Consensus 2 ~~Ig~i~~~~~~~~~~~~~gi~~~~~~-~g~~~~~~~~~~ 40 (313)
T 2h3h_A 2 LTIGVIGKSVHPYWSQVEQGVKAAGKA-LGVDTKFFVPQK 40 (313)
T ss_dssp CEEEEECSCSSHHHHHHHHHHHHHHHH-HTCEEEEECCSS
T ss_pred eEEEEEeCCCcHHHHHHHHHHHHHHHH-cCCEEEEECCCC
Confidence 467776644222666788888888877 688887765433
No 250
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A
Probab=36.40 E-value=16 Score=27.23 Aligned_cols=30 Identities=20% Similarity=0.157 Sum_probs=21.5
Q ss_pred hcCeeEEeccccCCc-cHHHHHHHHHHhccc
Q 028841 70 EADGFVFGFPTRFGM-MAAQFKAFLDATGGL 99 (203)
Q Consensus 70 ~aD~iiigsP~y~~~-~~~~~k~~ld~~~~~ 99 (203)
.+|.+|+|+|+|... +...++.+.+.+...
T Consensus 189 Gad~~VvG~~I~~a~dp~~a~~~~~~~~~~~ 219 (221)
T 3exr_A 189 DVFTFIAGRGITEAKNPAGAARAFKDEIKRI 219 (221)
T ss_dssp CCSEEEECHHHHTSSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEECchhhCCCCHHHHHHHHHHHHHHH
Confidence 478999999999754 556666666655433
No 251
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=36.39 E-value=58 Score=21.57 Aligned_cols=34 Identities=6% Similarity=-0.059 Sum_probs=21.3
Q ss_pred EEEEcCCc-chHHHHHHHHHHhcccCCCceEEEEEcCCCC
Q 028841 6 YIVYYSMY-GHVEKLAEEIKKGASSVEGVEAKLWQVPETL 44 (203)
Q Consensus 6 lii~~S~~-g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~ 44 (203)
+.||+.++ +.+++..+.+ +. .|++++.+|+.+..
T Consensus 6 i~iY~~p~C~~c~ka~~~L-~~----~gi~~~~~di~~~~ 40 (120)
T 3gkx_A 6 TLFLQYPACSTCQKAKKWL-IE----NNIEYTNRLIVDDN 40 (120)
T ss_dssp CEEEECTTCHHHHHHHHHH-HH----TTCCCEEEETTTTC
T ss_pred EEEEECCCChHHHHHHHHH-HH----cCCceEEEecccCc
Confidence 45677665 4555444443 32 58899999997754
No 252
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=36.10 E-value=1.1e+02 Score=21.34 Aligned_cols=46 Identities=7% Similarity=-0.009 Sum_probs=28.9
Q ss_pred hhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 67 ELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 67 ~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
.+..+|++|+..-.-...-...++.|+..+... ...++++.++++-
T Consensus 77 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK 122 (203)
T 1zbd_A 77 YYRGAMGFILMYDITNEESFNAVQDWSTQIKTY----SWDNAQVLLVGNK 122 (203)
T ss_dssp TGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHH----SCSSCEEEEEEEC
T ss_pred hhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEEC
Confidence 467899999987765543334456666665421 2356777777763
No 253
>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6
Probab=36.08 E-value=16 Score=28.06 Aligned_cols=15 Identities=13% Similarity=0.107 Sum_probs=10.0
Q ss_pred hhhcCeeEEeccccC
Q 028841 68 LAEADGFVFGFPTRF 82 (203)
Q Consensus 68 l~~aD~iiigsP~y~ 82 (203)
+.++|.||+++|...
T Consensus 56 ~~~~DvVilav~~~~ 70 (276)
T 2i76_A 56 PELNGVVFVIVPDRY 70 (276)
T ss_dssp CC---CEEECSCTTT
T ss_pred HhcCCEEEEeCChHH
Confidence 567999999999874
No 254
>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6
Probab=35.99 E-value=17 Score=27.90 Aligned_cols=15 Identities=13% Similarity=0.177 Sum_probs=12.4
Q ss_pred hhhhhcCeeEEeccc
Q 028841 66 NELAEADGFVFGFPT 80 (203)
Q Consensus 66 ~~l~~aD~iiigsP~ 80 (203)
+.+.++|.||+.+|.
T Consensus 57 ~~~~~~D~vi~~v~~ 71 (299)
T 1vpd_A 57 AIAEQCDVIITMLPN 71 (299)
T ss_dssp HHHHHCSEEEECCSS
T ss_pred HHHhCCCEEEEECCC
Confidence 456789999999984
No 255
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=35.83 E-value=69 Score=21.83 Aligned_cols=39 Identities=21% Similarity=0.018 Sum_probs=25.8
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
+++||+.+.. +.++..+++...+.+.. .+.++.++.+.+
T Consensus 5 ~~~ILv~vD~-s~~s~~al~~A~~la~~-~~a~l~ll~v~~ 43 (170)
T 2dum_A 5 FRKVLFPTDF-SEGAYRAVEVFEKRNKM-EVGEVILLHVID 43 (170)
T ss_dssp CSEEEEECCS-SHHHHHHHHHHHHHCCS-CCSEEEEEEEEE
T ss_pred cceEEEEecC-CHHHHHHHHHHHHHHHh-cCCEEEEEEEec
Confidence 4678776532 33466677777777766 677888887654
No 256
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=35.76 E-value=51 Score=21.60 Aligned_cols=38 Identities=13% Similarity=0.063 Sum_probs=23.4
Q ss_pred CCceEEEEE-cCCcchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 1 MATKVYIVY-YSMYGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 1 Mm~kilii~-~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
|+++||+.+ +|.. +..+++...+.+.. .+.++.++.+.
T Consensus 1 m~~~ILv~~D~s~~--s~~al~~a~~la~~-~~a~l~ll~v~ 39 (141)
T 1jmv_A 1 MYKHILVAVDLSEE--SPILLKKAVGIAKR-HDAKLSIIHVD 39 (141)
T ss_dssp CCSEEEEEECCSTT--HHHHHHHHHHHHHH-HTCEEEEEEEE
T ss_pred CCceEEEEecCchh--hHHHHHHHHHHHHh-cCCEEEEEEEe
Confidence 778998876 4544 34455555444444 35688887764
No 257
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2
Probab=35.73 E-value=30 Score=25.57 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=21.4
Q ss_pred EEEcCCc--chHHHHHHHHHHhcccCCCce
Q 028841 7 IVYYSMY--GHVEKLAEEIKKGASSVEGVE 34 (203)
Q Consensus 7 ii~~S~~--g~T~~la~~i~~~~~~~~g~~ 34 (203)
|.|+..- .||+..++.+.+.+++ .|++
T Consensus 25 i~YF~~~G~eNT~~tl~la~era~e-~~Ik 53 (206)
T 1t57_A 25 ICYFEEPGKENTERVLELVGERADQ-LGIR 53 (206)
T ss_dssp EEEESSCSGGGHHHHHHHHHHHHHH-HTCC
T ss_pred EEEecCCCcccHHHHHHHHHHHHHH-cCCC
Confidence 6788764 4999999999999887 4654
No 258
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=35.68 E-value=64 Score=26.04 Aligned_cols=39 Identities=13% Similarity=0.109 Sum_probs=30.4
Q ss_pred ceEEEEEcCCc---chHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 3 TKVYIVYYSMY---GHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 3 ~kilii~~S~~---g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
+||+|++|..+ .-+-.=+..+.+.+.+ .|+++..+++..
T Consensus 23 ~~v~vl~GG~S~E~evSl~Sa~~v~~al~~-~~~~v~~i~i~~ 64 (386)
T 3e5n_A 23 IRVGLIFGGKSAEHEVSLQSARNILDALDP-QRFEPVLIGIDK 64 (386)
T ss_dssp EEEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECT
T ss_pred ceEEEEeccCCCCchhHHHHHHHHHHHhCc-cCCEEEEEEECC
Confidence 47999998654 3455667788899988 799999999865
No 259
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=35.48 E-value=33 Score=25.58 Aligned_cols=32 Identities=13% Similarity=0.202 Sum_probs=21.5
Q ss_pred CceEEEEEcCCcch---HHHHHHHHHHhcccCCCce
Q 028841 2 ATKVYIVYYSMYGH---VEKLAEEIKKGASSVEGVE 34 (203)
Q Consensus 2 m~kilii~~S~~g~---T~~la~~i~~~~~~~~g~~ 34 (203)
|++|.|+.+|..++ -...|+.+.+.+.+ .|+.
T Consensus 13 m~~IaV~cGS~~~~~~~y~~~A~~lg~~LA~-~G~~ 47 (215)
T 2a33_A 13 FRRICVFCGSSQGKKSSYQDAAVDLGNELVS-RNID 47 (215)
T ss_dssp CSEEEEECCSSCCSSHHHHHHHHHHHHHHHH-TTCE
T ss_pred CCeEEEEECCCCCCchHHHHHHHHHHHHHHH-CCCE
Confidence 45688877887653 23578888888776 4543
No 260
>4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp}
Probab=35.43 E-value=36 Score=23.87 Aligned_cols=39 Identities=13% Similarity=0.136 Sum_probs=17.3
Q ss_pred CCceEEEEEc---CCcchH-HHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 1 MATKVYIVYY---SMYGHV-EKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 1 Mm~kilii~~---S~~g~T-~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
||+.|+.+-| |+.+.. ..+++.+.+. . .++++...|++.
T Consensus 1 MmptIl~lHGf~ss~~s~k~~~l~~~~~~~-~--~~~~v~~pdl~~ 43 (202)
T 4fle_A 1 MMSTLLYIHGFNSSPSSAKATTFKSWLQQH-H--PHIEMQIPQLPP 43 (202)
T ss_dssp --CEEEEECCTTCCTTCHHHHHHHHHHHHH-C--TTSEEECCCCCS
T ss_pred CCcEEEEeCCCCCCCCccHHHHHHHHHHHc-C--CCcEEEEeCCCC
Confidence 8888877755 333332 2333333322 1 245565555543
No 261
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=35.34 E-value=73 Score=21.63 Aligned_cols=41 Identities=12% Similarity=0.026 Sum_probs=23.3
Q ss_pred CceEEEEE-cCCcch-HHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 2 ATKVYIVY-YSMYGH-VEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 2 m~kilii~-~S~~g~-T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
|+|++|+. .+++|+ ...-+=.++..+.. .|.++.++-+.+-
T Consensus 5 Mkk~~ivv~~~P~g~~~~~~al~~a~a~~a-~~~~v~Vff~~DG 47 (136)
T 2hy5_B 5 VKKFMYLNRKAPYGTIYAWEALEVVLIGAA-FDQDVCVLFLDDG 47 (136)
T ss_dssp CCEEEEEECSCTTTSSHHHHHHHHHHHHGG-GCCEEEEEECGGG
T ss_pred hhEEEEEEeCCCCCcHHHHHHHHHHHHHHh-CCCCEEEEEEhHH
Confidence 66787665 457774 33333334444444 4668888776553
No 262
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=35.14 E-value=1.2e+02 Score=21.64 Aligned_cols=47 Identities=9% Similarity=-0.006 Sum_probs=27.3
Q ss_pred hhhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEe
Q 028841 65 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYS 115 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t 115 (203)
...+..+|++|+..-.-...-...++.|++.+... ...++++.++++
T Consensus 80 ~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~----~~~~~piilv~n 126 (223)
T 3cpj_B 80 SAYYRGAVGALIVYDISKSSSYENCNHWLSELREN----ADDNVAVGLIGN 126 (223)
T ss_dssp GGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHH----CC--CEEEEEEC
T ss_pred HHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEE
Confidence 45678999999886655544344556666665321 134667776665
No 263
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=35.08 E-value=65 Score=28.36 Aligned_cols=33 Identities=9% Similarity=0.169 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQV 40 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l 40 (203)
||+||||+... .++..+.+.+++ .|+++..++-
T Consensus 27 m~~kILI~g~G------eia~~iiraar~-lGi~~vav~s 59 (675)
T 3u9t_A 27 SIQRLLVANRG------EIACRVMRSARA-LGIGSVAVHS 59 (675)
T ss_dssp CCSEEEECCCH------HHHHHHHHHHHH-HTCEEEEEEC
T ss_pred CCCEEEEECCC------HHHHHHHHHHHH-CCCEEEEEEC
Confidence 45788886533 246666677776 6888877764
No 264
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=34.93 E-value=96 Score=20.61 Aligned_cols=48 Identities=4% Similarity=-0.047 Sum_probs=29.7
Q ss_pred hhhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 65 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+..+|++|+....-...-...++.|++.+... ...+.++.++++-
T Consensus 73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~----~~~~~~iilv~nK 120 (170)
T 1z0j_A 73 PMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQH----GPPSIVVAIAGNK 120 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH----SCTTSEEEEEEEC
T ss_pred HhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh----CCCCCcEEEEEEC
Confidence 44578899999987665544344556676665421 2356677666653
No 265
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=34.81 E-value=43 Score=21.91 Aligned_cols=47 Identities=13% Similarity=0.173 Sum_probs=25.5
Q ss_pred HHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 17 EKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 17 ~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
+...+.+.+.+.+ .|++++..-... ++.+.+ .+...++|.||+|+.-
T Consensus 65 ~~~l~~~~~~~~~-~g~~~~~~v~~g-~~~~~I---------------~~~a~~~dliV~G~~~ 111 (138)
T 3idf_A 65 KLLTQKFSTFFTE-KGINPFVVIKEG-EPVEMV---------------LEEAKDYNLLIIGSSE 111 (138)
T ss_dssp HHHHHHHHHHHHT-TTCCCEEEEEES-CHHHHH---------------HHHHTTCSEEEEECCT
T ss_pred HHHHHHHHHHHHH-CCCCeEEEEecC-ChHHHH---------------HHHHhcCCEEEEeCCC
Confidence 3445555556655 577665433322 232221 1223399999999863
No 266
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=34.78 E-value=95 Score=23.22 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=20.0
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
+||+|. |+ | .+...+.+.+.+ .|.+|..++-..
T Consensus 4 ~~ilVt-Ga--G---~iG~~l~~~L~~-~g~~V~~~~r~~ 36 (286)
T 3gpi_A 4 SKILIA-GC--G---DLGLELARRLTA-QGHEVTGLRRSA 36 (286)
T ss_dssp CCEEEE-CC--S---HHHHHHHHHHHH-TTCCEEEEECTT
T ss_pred CcEEEE-CC--C---HHHHHHHHHHHH-CCCEEEEEeCCc
Confidence 477764 53 4 355555555555 577888776543
No 267
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=34.70 E-value=66 Score=25.51 Aligned_cols=41 Identities=10% Similarity=0.142 Sum_probs=28.1
Q ss_pred CC-ceEEEEEcCCcc---hHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 1 MA-TKVYIVYYSMYG---HVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 1 Mm-~kilii~~S~~g---~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
|| +||+|+++.... -+-.=+..+.+.+.+ .|+++..+++..
T Consensus 1 m~~~~v~vl~gg~s~E~~vs~~s~~~v~~al~~-~g~~v~~i~~~~ 45 (364)
T 2i87_A 1 MTKENICIVFGGKSAEHEVSILTAQNVLNAIDK-DKYHVDIIYITN 45 (364)
T ss_dssp --CEEEEEEEECSSSCHHHHHHHHHHHHHTSCT-TTEEEEEEEECT
T ss_pred CCCcEEEEEECCCCccchhHHHHHHHHHHHHhh-cCCEEEEEEEcC
Confidence 53 489999976432 233345778888888 799999998754
No 268
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Probab=34.47 E-value=67 Score=24.26 Aligned_cols=16 Identities=19% Similarity=0.198 Sum_probs=13.6
Q ss_pred hhhh-hcCeeEEecccc
Q 028841 66 NELA-EADGFVFGFPTR 81 (203)
Q Consensus 66 ~~l~-~aD~iiigsP~y 81 (203)
+.+. ++|.||+..|..
T Consensus 57 ~~~~~~aDvVilavp~~ 73 (281)
T 2g5c_A 57 KVEDFSPDFVMLSSPVR 73 (281)
T ss_dssp GGGGTCCSEEEECSCHH
T ss_pred HHhcCCCCEEEEcCCHH
Confidence 4567 899999999987
No 269
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=34.43 E-value=44 Score=21.93 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
|+++||+.+.. +..+..+++...+.++. .|.++.++.+.+
T Consensus 1 m~~~ILv~~D~-s~~s~~al~~a~~la~~-~~a~l~ll~v~~ 40 (137)
T 2z08_A 1 MFKTILLAYDG-SEHARRAAEVAKAEAEA-HGARLIVVHAYE 40 (137)
T ss_dssp CCSEEEEECCS-SHHHHHHHHHHHHHHHH-HTCEEEEEEEEC
T ss_pred CcceEEEEeCC-CHHHHHHHHHHHHHHhh-cCCEEEEEEEec
Confidence 78888887642 22344555555555444 466888887754
No 270
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=34.39 E-value=60 Score=21.19 Aligned_cols=38 Identities=13% Similarity=0.001 Sum_probs=24.6
Q ss_pred CCceEEEEE-cCCcchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 1 MATKVYIVY-YSMYGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 1 Mm~kilii~-~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
|+++||+.+ +|.. +...++...+.++. .|.++.++.+.
T Consensus 3 ~~~~ILv~~D~s~~--s~~al~~a~~la~~-~~a~l~ll~v~ 41 (138)
T 1q77_A 3 AMKVLLVLTDAYSD--CEKAITYAVNFSEK-LGAELDILAVL 41 (138)
T ss_dssp CCEEEEEEESTTCC--CHHHHHHHHHHHTT-TCCEEEEEEEC
T ss_pred cccEEEEEccCCHh--HHHHHHHHHHHHHH-cCCeEEEEEEe
Confidence 677888877 4544 34455555555555 57788888764
No 271
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=34.21 E-value=1.4e+02 Score=22.08 Aligned_cols=40 Identities=30% Similarity=0.316 Sum_probs=27.3
Q ss_pred CCceEEEEEcCC-cchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 1 MATKVYIVYYSM-YGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 1 Mm~kilii~~S~-~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
|..+|.++..+. +.....+.+.+.+.+.+ .|.++.+.+..
T Consensus 1 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g~~~~~~~~~ 41 (290)
T 2fn9_A 1 MKGKMAIVISTLNNPWFVVLAETAKQRAEQ-LGYEATIFDSQ 41 (290)
T ss_dssp --CEEEEEESCSSSHHHHHHHHHHHHHHHH-TTCEEEEEECT
T ss_pred CceEEEEEeCCCCChHHHHHHHHHHHHHHH-cCCEEEEeCCC
Confidence 545676666543 44566788888888888 79888877653
No 272
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*
Probab=34.13 E-value=89 Score=24.63 Aligned_cols=32 Identities=19% Similarity=0.018 Sum_probs=21.0
Q ss_pred hhhhhcCeeEEeccccCCccHHHHHHHHHHhc
Q 028841 66 NELAEADGFVFGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~ 97 (203)
+.+..+|.||..++.|........+++++...
T Consensus 69 ~~~~~~d~Vi~~a~~~~~~~~~~~~~l~~aa~ 100 (352)
T 1xgk_A 69 TLFEGAHLAFINTTSQAGDEIAIGKDLADAAK 100 (352)
T ss_dssp HHHTTCSEEEECCCSTTSCHHHHHHHHHHHHH
T ss_pred HHHhcCCEEEEcCCCCCcHHHHHHHHHHHHHH
Confidence 44678999998777664433344477777663
No 273
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=34.06 E-value=47 Score=28.46 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=19.2
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEE
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQ 39 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~ 39 (203)
|++|+||-+. .||+..+.+.+.+ .|.++.++.
T Consensus 4 m~~I~Iid~~-~g~~~~~~~~l~~-----~G~~~~vv~ 35 (555)
T 1jvn_A 4 MPVVHVIDVE-SGNLQSLTNAIEH-----LGYEVQLVK 35 (555)
T ss_dssp SCEEEEECCS-CSCCHHHHHHHHH-----TTCEEEEES
T ss_pred CCEEEEEECC-CCCHHHHHHHHHH-----CCCEEEEEC
Confidence 3588888542 3566555555543 466777654
No 274
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Probab=33.88 E-value=37 Score=30.27 Aligned_cols=100 Identities=7% Similarity=-0.100 Sum_probs=50.6
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc--
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT-- 80 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~-- 80 (203)
+||+|+.+. |....=+....+.+.. .|++++++........ .........+.... .....++|+|||..-.
T Consensus 535 rkVaILl~d--Gfe~~El~~p~dvL~~-AG~~V~ivS~~gg~V~---ss~G~~v~~d~~l~-~v~~~~yDaViVPGG~~~ 607 (715)
T 1sy7_A 535 RRVAIIIAD--GYDNVAYDAAYAAISA-NQAIPLVIGPRRSKVT---AANGSTVQPHHHLE-GFRSTMVDAIFIPGGAKA 607 (715)
T ss_dssp CEEEEECCT--TBCHHHHHHHHHHHHH-TTCEEEEEESCSSCEE---BTTSCEECCSEETT-TCCGGGSSEEEECCCHHH
T ss_pred CEEEEEEcC--CCCHHHHHHHHHHHHh-cCCEEEEEECCCCcee---cCCCceEecccccc-cCCcccCCEEEEcCCccc
Confidence 578887664 3333333445566666 5889998887543211 00000001111000 0124578999886431
Q ss_pred -cCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 81 -RFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 81 -y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
+.....+.+..||.+.. -.+|+++.+|++
T Consensus 608 ~~~l~~~~~l~~~Lr~~~-------~~gK~IaAIC~G 637 (715)
T 1sy7_A 608 AETLSKNGRALHWIREAF-------GHLKAIGATGEA 637 (715)
T ss_dssp HHHHHTCHHHHHHHHHHH-------HTTCEEEEETTH
T ss_pred HhhhccCHHHHHHHHHHH-------hCCCEEEEECHH
Confidence 11112345566666552 368998887764
No 275
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=33.80 E-value=89 Score=24.68 Aligned_cols=84 Identities=14% Similarity=0.133 Sum_probs=42.6
Q ss_pred eEEEEEcCC-cchHHHHHHHHHHhcccCCCceEEEEEcCCCCc----HHHhccCCCCCCCCCCCCChhhhhhcCeeE-Ee
Q 028841 4 KVYIVYYSM-YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLP----EEVLGKMSAPPKSDVPIITPNELAEADGFV-FG 77 (203)
Q Consensus 4 kilii~~S~-~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~----~~~~~~~~~~~~~d~~~~~~~~l~~aD~ii-ig 77 (203)
||+|++--+ .+.|+.....+..... ..++++++++.+-.. .+-+...+. ++++ .+...+|++| .|
T Consensus 49 kI~ILnlmp~k~~te~qf~rlL~~~~--~qv~v~~~~~~~~~~~~~~~~hl~~~y~----~f~~---~~~~~~DglIITG 119 (312)
T 2h2w_A 49 EILILNLMPDKIKTEIQLLRLLGNTP--LQVNVTLLYTETHKPKHTPIEHILKFYT----TFSA---VKDRKFDGFIITG 119 (312)
T ss_dssp EEEEECCCSSHHHHHHHHHHHHHSSS--SCEEEEEECCSCCCCCSSCHHHHHHHCB----CGGG---TTTCCEEEEEECC
T ss_pred eEEEEeCCCCcCchHHHHHHHhcCCC--CcEEEEEEEccCCCCCCccHHHHhhccC----Cccc---ccccCcCEEEECC
Confidence 899999754 4677654444433322 345666666654321 011110000 1111 1346789885 57
Q ss_pred ccccCCc---cH--HHHHHHHHHh
Q 028841 78 FPTRFGM---MA--AQFKAFLDAT 96 (203)
Q Consensus 78 sP~y~~~---~~--~~~k~~ld~~ 96 (203)
+|+-... +| ..++.++++.
T Consensus 120 sP~~~~~~ed~~yw~el~~li~~~ 143 (312)
T 2h2w_A 120 APVELLPFEEVDYWEELTEIMEWS 143 (312)
T ss_dssp CSCTTSCGGGSTTHHHHHHHHHHH
T ss_pred CCCCCCCCccCchHHHHHHHHHHH
Confidence 9963221 21 5677777776
No 276
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=33.75 E-value=80 Score=21.81 Aligned_cols=48 Identities=8% Similarity=0.014 Sum_probs=29.8
Q ss_pred hhhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 65 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+..+|++|+..-.-...--..++.|++.+... ...++++.++++-
T Consensus 83 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~p~ilv~nK 130 (196)
T 3tkl_A 83 SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY----ASENVNKLLVGNK 130 (196)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEEC
T ss_pred HHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEEC
Confidence 44678899999987665543334456666665422 2346777777663
No 277
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=33.41 E-value=73 Score=21.43 Aligned_cols=40 Identities=18% Similarity=0.047 Sum_probs=25.9
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
|+++||+-+.- +.++..+++...+.+.. .|.++.++.+.+
T Consensus 4 ~~~~ILv~vD~-s~~s~~al~~a~~la~~-~~a~l~ll~v~~ 43 (162)
T 1mjh_A 4 MYKKILYPTDF-SETAEIALKHVKAFKTL-KAEEVILLHVID 43 (162)
T ss_dssp CCCEEEEECCS-CHHHHHHHHHHHHTCCS-SCCEEEEEEEEE
T ss_pred ccceEEEEeCC-CHHHHHHHHHHHHHHhh-cCCeEEEEEEec
Confidence 45678776532 23456677777776665 577888887643
No 278
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=33.37 E-value=1.6e+02 Score=22.59 Aligned_cols=38 Identities=11% Similarity=0.085 Sum_probs=28.3
Q ss_pred ceEEEEEcCCc--chHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 3 TKVYIVYYSMY--GHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 3 ~kilii~~S~~--g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
.+|.+|+.+.. .....+.+.+.+.+++ .|+++.+.+..
T Consensus 4 ~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~-~g~~~~~~~~~ 43 (350)
T 3h75_A 4 TSVVFLNPGNSTETFWVSYSQFMQAAARD-LGLDLRILYAE 43 (350)
T ss_dssp CEEEEEECSCTTCHHHHHHHHHHHHHHHH-HTCEEEEEECT
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHH-cCCeEEEEECC
Confidence 46777776543 4677888999998888 69998887654
No 279
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=33.17 E-value=23 Score=28.31 Aligned_cols=37 Identities=11% Similarity=0.073 Sum_probs=24.4
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEc
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQV 40 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l 40 (203)
|+||+++.....|+...++ .+++.+.+ .|.+|.++.-
T Consensus 20 m~rIl~~~~~~~GHv~p~l-~La~~L~~-~Gh~V~v~~~ 56 (415)
T 3rsc_A 20 MAHLLIVNVASHGLILPTL-TVVTELVR-RGHRVSYVTA 56 (415)
T ss_dssp CCEEEEECCSCHHHHGGGH-HHHHHHHH-TTCEEEEEEC
T ss_pred CCEEEEEeCCCccccccHH-HHHHHHHH-CCCEEEEEeC
Confidence 3489887766667655443 34455555 5889998874
No 280
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*
Probab=33.06 E-value=29 Score=28.80 Aligned_cols=47 Identities=15% Similarity=0.051 Sum_probs=28.0
Q ss_pred HHHHHHhcccCC-CceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 20 AEEIKKGASSVE-GVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 20 a~~i~~~~~~~~-g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
+-.|.+.|.+ . |++|.++|..-... . ......+.+..||+||+.|+-
T Consensus 337 a~~i~~~L~~-~~g~~V~~~DP~~~~~---~----------~~~~~~~~~~~ad~vvi~t~~ 384 (431)
T 3ojo_A 337 AFDIYELLNQ-EPDIEVCAYDPHVELD---F----------VEHDMSHAVKDASLVLILSDH 384 (431)
T ss_dssp HHHHHHHHHH-STTCEEEEECSSCCCT---T----------BCSTTHHHHTTCSEEEECSCC
T ss_pred HHHHHHHHHh-hcCCEEEEECCCcccc---c----------ccCCHHHHHhCCCEEEEecCC
Confidence 3344455555 5 88888887643210 0 001124678899999999863
No 281
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=32.94 E-value=47 Score=25.27 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCc------chHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 1 MATKVYIVYYSMY------GHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 1 Mm~kilii~~S~~------g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
|| ||+|+++... -.+. .+.+.+++ .|+++.++|..+
T Consensus 1 mm-~i~il~~~~~~~~~~~~s~~----~l~~a~~~-~G~~v~~~d~~~ 42 (316)
T 1gsa_A 1 MI-KLGIVMDPIANINIKKDSSF----AMLLEAQR-RGYELHYMEMGD 42 (316)
T ss_dssp CC-EEEEECSCGGGCCTTTCHHH----HHHHHHHH-TTCEEEEECGGG
T ss_pred Cc-eEEEEeCcHHhCCcCCChHH----HHHHHHHH-CCCEEEEEchhH
Confidence 55 8999987632 1233 34555555 688998888754
No 282
>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}
Probab=32.86 E-value=1.5e+02 Score=24.83 Aligned_cols=59 Identities=17% Similarity=0.231 Sum_probs=32.1
Q ss_pred cCeeEEeccccCCccHHHHHHHHHHhcccccccCC-CCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCC
Q 028841 71 ADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQL-AGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 71 aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l-~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~ 145 (203)
+|.||+..|.. ..++..++.+.. .+ +|+. +...+. +.... ...+.+.+...|+.+++.+
T Consensus 75 aDvVil~Vp~~-----~~v~~vl~~l~~-----~l~~g~i---IId~s~--~~~~~-~~~l~~~l~~~g~~~v~~p 134 (497)
T 2p4q_A 75 PRKVMLLVKAG-----APVDALINQIVP-----LLEKGDI---IIDGGN--SHFPD-SNRRYEELKKKGILFVGSG 134 (497)
T ss_dssp SCEEEECCCSS-----HHHHHHHHHHGG-----GCCTTCE---EEECSC--CCHHH-HHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEEcCCh-----HHHHHHHHHHHH-----hCCCCCE---EEECCC--CChhH-HHHHHHHHHHcCCceeCCC
Confidence 99999999863 246677766642 23 2332 222222 12211 2335566666777776544
No 283
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=32.54 E-value=1e+02 Score=21.52 Aligned_cols=52 Identities=12% Similarity=-0.069 Sum_probs=28.8
Q ss_pred hhhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 65 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+..+|++|+....-...-...++.|++.+..........++++.++++-
T Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 126 (207)
T 1vg8_A 75 VAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNK 126 (207)
T ss_dssp CGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEEC
T ss_pred HHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEEC
Confidence 3457889999998765443333344555555432111111246777777763
No 284
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=32.52 E-value=75 Score=23.77 Aligned_cols=32 Identities=16% Similarity=0.266 Sum_probs=22.4
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
||+| +|-|-.+..++.+.+.+ .|.+|..++-.
T Consensus 7 ~ilV-----tGatG~iG~~l~~~L~~-~g~~V~~~~r~ 38 (287)
T 3sc6_A 7 RVII-----TGANGQLGKQLQEELNP-EEYDIYPFDKK 38 (287)
T ss_dssp EEEE-----ESTTSHHHHHHHHHSCT-TTEEEEEECTT
T ss_pred EEEE-----ECCCCHHHHHHHHHHHh-CCCEEEEeccc
Confidence 7776 34445677788888877 68888777643
No 285
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=32.30 E-value=24 Score=29.04 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=21.1
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQV 40 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l 40 (203)
||+||||+... .++..+.+.+++ .|+++..++-
T Consensus 1 m~k~ilI~g~g------~~~~~~~~a~~~-~G~~vv~v~~ 33 (449)
T 2w70_A 1 MLDKIVIANRG------EIALRILRACKE-LGIKTVAVHS 33 (449)
T ss_dssp CCSEEEECCCH------HHHHHHHHHHHH-HTCEEEEEEE
T ss_pred CCceEEEeCCc------HHHHHHHHHHHH-cCCeEEEEec
Confidence 88898887532 234445555555 5888887764
No 286
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=32.29 E-value=1.2e+02 Score=20.48 Aligned_cols=51 Identities=12% Similarity=-0.050 Sum_probs=29.4
Q ss_pred hhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 66 NELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..+..+|++|+..-.-...-...++.|++.+..........+.++.++++-
T Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 127 (182)
T 1ky3_A 77 AFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127 (182)
T ss_dssp CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEEC
T ss_pred HHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEEC
Confidence 346789999998765544333445666665532111112357788877763
No 287
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=32.29 E-value=1.5e+02 Score=21.92 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=28.3
Q ss_pred eEEEEEcCC-cchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 4 KVYIVYYSM-YGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilii~~S~-~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
+|.++..+. +.....+.+.+.+.+.+ .|+++.+.+...
T Consensus 10 ~Igvv~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~ 48 (291)
T 3egc_A 10 VVGLIVSDIENVFFAEVASGVESEARH-KGYSVLLANTAE 48 (291)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHH-TTCEEEEEECTT
T ss_pred EEEEEECCCcchHHHHHHHHHHHHHHH-CCCEEEEEeCCC
Confidence 566666553 45677889999999988 799998887654
No 288
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=32.19 E-value=74 Score=21.79 Aligned_cols=50 Identities=16% Similarity=0.185 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcccCCCce-EEEEEcCCCCcHH-HhccCCCCCCCCCCCCChhhhhhcCeeEEeccccC
Q 028841 17 EKLAEEIKKGASSVEGVE-AKLWQVPETLPEE-VLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRF 82 (203)
Q Consensus 17 ~~la~~i~~~~~~~~g~~-v~~~~l~~~~~~~-~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~ 82 (203)
+...+.+.+.+.+ .|++ ++..-... ++.. +++ ...-.++|.||+|+.-..
T Consensus 80 ~~~l~~~~~~~~~-~gv~~v~~~v~~G-~~~~~I~~--------------~a~~~~~DLIV~G~~g~~ 131 (163)
T 1tq8_A 80 YEILHDAKERAHN-AGAKNVEERPIVG-APVDALVN--------------LADEEKADLLVVGNVGLS 131 (163)
T ss_dssp HHHHHHHHHHHHT-TTCCEEEEEEECS-SHHHHHHH--------------HHHHTTCSEEEEECCCCC
T ss_pred HHHHHHHHHHHHH-cCCCeEEEEEecC-CHHHHHHH--------------HHHhcCCCEEEECCCCCC
Confidence 4455556666665 5776 66543322 3322 111 122358999999987543
No 289
>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*
Probab=32.08 E-value=1e+02 Score=24.61 Aligned_cols=13 Identities=0% Similarity=-0.074 Sum_probs=9.1
Q ss_pred hhhhhhcCeeEEe
Q 028841 65 PNELAEADGFVFG 77 (203)
Q Consensus 65 ~~~l~~aD~iiig 77 (203)
.+.+.++|+|++.
T Consensus 40 ~~~~~~~d~li~~ 52 (343)
T 2yq5_A 40 VDLAEGCSSVSLK 52 (343)
T ss_dssp GGGGTTCSEEEEC
T ss_pred HHHhcCCcEEEEc
Confidence 3567788888775
No 290
>3pu6_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.60A {Wolinella succinogenes}
Probab=32.05 E-value=1.3e+02 Score=20.96 Aligned_cols=67 Identities=19% Similarity=0.171 Sum_probs=39.8
Q ss_pred CCceEEEEE-cCC----cchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhh--cCe
Q 028841 1 MATKVYIVY-YSM----YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAE--ADG 73 (203)
Q Consensus 1 Mm~kilii~-~S~----~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~--aD~ 73 (203)
|.+|++|+- |.. .|.--.+++.+.+.+ . .++++|.... +.++ ...+.+ +|.
T Consensus 1 M~m~ilVlGiGN~L~gDDG~G~~v~~~L~~~~---p--~v~vid~Gt~-~~~l----------------~~~l~~~~~d~ 58 (157)
T 3pu6_A 1 MSLKKVLLCVGNELRGDDGVAIALGRLVEEQM---P--EWSVFFGYDT-PESE----------------FGKLRELAPDV 58 (157)
T ss_dssp --CCEEEEEECCTTBGGGGHHHHHHHHHHHHC---T--TEEEEEEETC-GGGG----------------HHHHHHHCCSE
T ss_pred CCCCEEEEEECCcccccccHHHHHHHHHHhhC---C--CeEEEECCCC-HHHH----------------HHHHHhcCCCE
Confidence 534788774 443 467778888887433 3 5788887542 2111 345665 999
Q ss_pred eEEeccccCCccHHHHH
Q 028841 74 FVFGFPTRFGMMAAQFK 90 (203)
Q Consensus 74 iiigsP~y~~~~~~~~k 90 (203)
+||.=-+ .+..|+.++
T Consensus 59 lIiVDA~-~g~~PGti~ 74 (157)
T 3pu6_A 59 IVVADAM-SGFKEGEIE 74 (157)
T ss_dssp EEEEEEE-EC----CEE
T ss_pred EEEEEec-CCCCCcEEE
Confidence 9998777 777777654
No 291
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=31.93 E-value=40 Score=22.41 Aligned_cols=34 Identities=12% Similarity=0.155 Sum_probs=21.1
Q ss_pred EEEEcCCc-chHHHHHHHHHHhcccCCCceEEEEEcCCCC
Q 028841 6 YIVYYSMY-GHVEKLAEEIKKGASSVEGVEAKLWQVPETL 44 (203)
Q Consensus 6 lii~~S~~-g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~ 44 (203)
+.||+.++ +.+++..+.+ + + .|++++.+|+.+..
T Consensus 7 i~iY~~p~C~~c~ka~~~L-~---~-~gi~~~~~di~~~~ 41 (121)
T 3rdw_A 7 VTIYHNPRCSKSRETLALV-E---Q-QGITPQVVLYLETP 41 (121)
T ss_dssp CEEECCTTCHHHHHHHHHH-H---T-TTCCCEEECTTTSC
T ss_pred EEEEECCCCHHHHHHHHHH-H---H-cCCCcEEEeeccCC
Confidence 45677765 4454443333 3 3 58889999987754
No 292
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=31.83 E-value=1.7e+02 Score=22.18 Aligned_cols=37 Identities=16% Similarity=0.031 Sum_probs=27.8
Q ss_pred ceEEEEEcCC-cchHHHHHHHHHHhcccCCCceEEEEEc
Q 028841 3 TKVYIVYYSM-YGHVEKLAEEIKKGASSVEGVEAKLWQV 40 (203)
Q Consensus 3 ~kilii~~S~-~g~T~~la~~i~~~~~~~~g~~v~~~~l 40 (203)
++|.++..+. +.....+.+.+.+.+++ .|+++.+.+.
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~ 41 (330)
T 3uug_A 4 GSVGIAMPTKSSARWIDDGNNIVKQLQE-AGYKTDLQYA 41 (330)
T ss_dssp CEEEEEECCSSSTHHHHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred cEEEEEeCCCcchHHHHHHHHHHHHHHH-cCCEEEEeeC
Confidence 3566666553 55677789999999988 7999888874
No 293
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=31.67 E-value=36 Score=23.60 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=15.8
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGAS 28 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~ 28 (203)
||++|+|+=.+..|.| .+++.+++.+.
T Consensus 3 ~m~~i~i~G~~GsGKs-Tla~~La~~l~ 29 (175)
T 1via_A 3 LAKNIVFIGFMGSGKS-TLARALAKDLD 29 (175)
T ss_dssp --CCEEEECCTTSCHH-HHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHH-HHHHHHHHHcC
Confidence 4544544433457776 47888888773
No 294
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Probab=31.59 E-value=1.1e+02 Score=23.91 Aligned_cols=54 Identities=20% Similarity=0.092 Sum_probs=29.3
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCc-eEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGV-EAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~-~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
||+| . |-|-.+...+.+.|.+ .|. ++...|.. .+++.+ .+.+...|.||..+..
T Consensus 2 ~VlV-t----GatG~iG~~l~~~L~~-~g~~~v~~~d~~-~d~~~l----------------~~~~~~~d~Vih~a~~ 56 (369)
T 3st7_A 2 NIVI-T----GAKGFVGKNLKADLTS-TTDHHIFEVHRQ-TKEEEL----------------ESALLKADFIVHLAGV 56 (369)
T ss_dssp EEEE-E----TTTSHHHHHHHHHHHH-HCCCEEEECCTT-CCHHHH----------------HHHHHHCSEEEECCCS
T ss_pred EEEE-E----CCCCHHHHHHHHHHHh-CCCCEEEEECCC-CCHHHH----------------HHHhccCCEEEECCcC
Confidence 7776 3 3333455555555555 465 66666652 222211 2356678999876543
No 295
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=31.54 E-value=85 Score=24.85 Aligned_cols=41 Identities=7% Similarity=0.069 Sum_probs=27.6
Q ss_pred CC-ceEEEEEcCCcc---hHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 1 MA-TKVYIVYYSMYG---HVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 1 Mm-~kilii~~S~~g---~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
|. +||.|++|-.++ -+-.=+..+.+.+.+ .|+++..+++..
T Consensus 1 M~kkkv~vl~GG~S~E~evSl~Sa~~v~~aL~~-~gy~v~~i~i~~ 45 (357)
T 4fu0_A 1 MQNKKIAVIFGGNSTEYEVSLQSASAVFENINT-NKFDIIPIGITR 45 (357)
T ss_dssp -CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECT
T ss_pred CCCCEEEEEECCCccchHHHHHHHHHHHHHHhH-hCCEEEEEEEeC
Confidence 54 468999985433 122236678888988 799999887653
No 296
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=31.48 E-value=1.2e+02 Score=20.73 Aligned_cols=48 Identities=8% Similarity=0.058 Sum_probs=30.2
Q ss_pred hhhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEe
Q 028841 65 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYS 115 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t 115 (203)
...+..+|++|+....-...-...++.|++.+... ....++++.++++
T Consensus 82 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~~p~ilv~n 129 (195)
T 1x3s_A 82 PSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETY---CTRNDIVNMLVGN 129 (195)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTC---CSCSCCEEEEEEE
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh---cCcCCCcEEEEEE
Confidence 45678999999987665544344566677766421 1124677777665
No 297
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=31.14 E-value=1.2e+02 Score=21.62 Aligned_cols=77 Identities=14% Similarity=0.139 Sum_probs=44.6
Q ss_pred eEEEEEcCC-----------cch--HHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhh
Q 028841 4 KVYIVYYSM-----------YGH--VEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAE 70 (203)
Q Consensus 4 kilii~~S~-----------~g~--T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~ 70 (203)
||+|+++.. +|+ -+.+.+.+.+...+ .|++++.+.-... .+.++. ..+...+
T Consensus 30 ~IlVLNGPNLNlLG~REP~iYG~~TL~dI~~~l~~~a~~-~G~~l~~~QSN~E--GeLId~------------Ih~A~~~ 94 (172)
T 3n8k_A 30 IVNVINGPNLGRLGRREPAVYGGTTHDELVALIEREAAE-LGLKAVVRQSDSE--AQLLDW------------IHQAADA 94 (172)
T ss_dssp EEEEEECTTGGGTTTSCHHHHCSCCHHHHHHHHHHHHHH-TTCEEEEEECSCH--HHHHHH------------HHHHHHH
T ss_pred EEEEEcCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHH-cCCEEEEEecCCH--HHHHHH------------HHHhhhc
Confidence 899999984 342 44556666666666 6888887764321 111110 1223456
Q ss_pred cCeeEEeccccCCccHHHHHHHHHHh
Q 028841 71 ADGFVFGFPTRFGMMAAQFKAFLDAT 96 (203)
Q Consensus 71 aD~iiigsP~y~~~~~~~~k~~ld~~ 96 (203)
+|+|||=.--|-..-- .+++.|..+
T Consensus 95 ~dgIIINPgAyTHtSv-AlrDAL~~v 119 (172)
T 3n8k_A 95 AEPVILNAGGLTHTSV-ALRDACAEL 119 (172)
T ss_dssp TCCEEEECGGGGGTCH-HHHHHHTTC
T ss_pred CcEEEECcchhhhhhH-HHHHHHHhC
Confidence 8999998777753322 355555444
No 298
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=31.10 E-value=50 Score=26.80 Aligned_cols=32 Identities=13% Similarity=0.192 Sum_probs=22.1
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
+||+|+.+. .+++.+...+++ .|+++.++| ..
T Consensus 25 ~~I~ilGgG------~lg~~l~~aa~~-lG~~v~~~d-~~ 56 (403)
T 3k5i_A 25 RKVGVLGGG------QLGRMLVESANR-LNIQVNVLD-AD 56 (403)
T ss_dssp CEEEEECCS------HHHHHHHHHHHH-HTCEEEEEE-ST
T ss_pred CEEEEECCC------HHHHHHHHHHHH-CCCEEEEEE-CC
Confidence 467776654 356666666666 588999998 54
No 299
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=31.09 E-value=73 Score=30.33 Aligned_cols=33 Identities=18% Similarity=0.104 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQV 40 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l 40 (203)
||+||||+... .++..+.+.+++ .|+++..++-
T Consensus 30 m~kkILI~grG------eia~~iiraar~-lGi~vVaV~s 62 (1236)
T 3va7_A 30 PFETVLIANRG------EIAVRIMKTLKR-MGIKSVAVYS 62 (1236)
T ss_dssp SCSEEEECCCH------HHHHHHHHHHHH-HTCEEEEEEC
T ss_pred CCCEEEEEcCC------HHHHHHHHHHHH-CCCEEEEEEc
Confidence 56788887543 346666677776 6888777754
No 300
>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}
Probab=31.04 E-value=21 Score=26.15 Aligned_cols=44 Identities=7% Similarity=0.009 Sum_probs=26.9
Q ss_pred hhhhhcCeeEEeccccCC----ccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 66 NELAEADGFVFGFPTRFG----MMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~----~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
+++.++|.||+....-.. .-.+.+..||.+.. -+||+++.++++
T Consensus 70 ~~~~~~D~livpGg~~~~~~~~~~~~~l~~~l~~~~-------~~g~~iaaIC~G 117 (209)
T 3er6_A 70 QSFDFTNILIIGSIGDPLESLDKIDPALFDWIRELH-------LKGSKIVAIDTG 117 (209)
T ss_dssp GGCSCCSEEEECCCSCHHHHGGGSCHHHHHHHHHHH-------HTTCEEEEETTH
T ss_pred cccCCCCEEEECCCCCchhhhccCCHHHHHHHHHHH-------hcCCEEEEEcHH
Confidence 455789999885432111 12456677776653 367888877764
No 301
>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*
Probab=31.02 E-value=31 Score=27.35 Aligned_cols=35 Identities=9% Similarity=-0.157 Sum_probs=18.9
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
||++||| .|. |-.|...+.+.+.+ .|.+|..++-.
T Consensus 27 M~k~vlV-tGa----tG~IG~~l~~~L~~-~g~~V~~~~r~ 61 (381)
T 1n7h_A 27 PRKIALI-TGI----TGQDGSYLTEFLLG-KGYEVHGLIRR 61 (381)
T ss_dssp -CCEEEE-ETT----TSHHHHHHHHHHHH-TTCEEEEEECC
T ss_pred hCCeEEE-EcC----CchHHHHHHHHHHH-CCCEEEEEecC
Confidence 4456665 343 33455555555555 57788777644
No 302
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=30.99 E-value=93 Score=23.49 Aligned_cols=100 Identities=11% Similarity=0.046 Sum_probs=52.6
Q ss_pred CceEEEEEcCC-cchHHHHHHHHHHhcccCCCceEEEEEcCCCC--cHHHhccCCCC----CCCCCCCCChhhhhhcCee
Q 028841 2 ATKVYIVYYSM-YGHVEKLAEEIKKGASSVEGVEAKLWQVPETL--PEEVLGKMSAP----PKSDVPIITPNELAEADGF 74 (203)
Q Consensus 2 m~kilii~~S~-~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~--~~~~~~~~~~~----~~~d~~~~~~~~l~~aD~i 74 (203)
|.++.++||++ .|.|..+.+.+.+... .|..+-++....-. ...+.....-. ...+..+ ..+.+.++|.|
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~--~g~kvli~kp~~D~Ryg~~i~sr~G~~~~a~~i~~~~d-i~~~~~~~dvV 94 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQI--AQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRD-VAQEALGVAVI 94 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT--TTCCEEEEEETTCCCC-----------CEEEEESSGGG-GHHHHTTCSEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH--CCCeEEEEeecCCccchHHHHhhcCCeeEEEecCCHHH-HHHHhccCCEE
Confidence 55788999995 7999888888777655 47777777632211 11111100000 0000011 13445678888
Q ss_pred EEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEe
Q 028841 75 VFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYS 115 (203)
Q Consensus 75 iigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t 115 (203)
++==-.++.. +..+++.+. -.|+++.+.+-
T Consensus 95 iIDEaQF~~~----v~el~~~l~-------~~gi~VI~~GL 124 (234)
T 2orv_A 95 GIDEGQFFPD----IVEFCEAMA-------NAGKTVIVAAL 124 (234)
T ss_dssp EESSGGGCTT----HHHHHHHHH-------HTTCEEEEECC
T ss_pred EEEchhhhhh----HHHHHHHHH-------hCCCEEEEEec
Confidence 8875555532 555555542 25666655543
No 303
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=30.96 E-value=1.2e+02 Score=23.38 Aligned_cols=39 Identities=23% Similarity=-0.046 Sum_probs=23.2
Q ss_pred hhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCC
Q 028841 66 NELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGS 118 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~ 118 (203)
+.+.++|.||-.|| |......+..+. -.|+++. ++|.|+
T Consensus 69 ~ll~~~DVVIDfT~------p~a~~~~~~~al-------~~G~~vV-igTTG~ 107 (272)
T 4f3y_A 69 RVCAEADYLIDFTL------PEGTLVHLDAAL-------RHDVKLV-IGTTGF 107 (272)
T ss_dssp HHHHHCSEEEECSC------HHHHHHHHHHHH-------HHTCEEE-ECCCCC
T ss_pred HHhcCCCEEEEcCC------HHHHHHHHHHHH-------HcCCCEE-EECCCC
Confidence 34678999998874 555555555542 2456644 455554
No 304
>3bed_A PTS system, IIA component; mannose/sorbose, phosphotransferase system, structural genom APC28805, PSI-2, protein structure initiative; HET: MSE MLY; 1.45A {Enterococcus faecalis} SCOP: c.54.1.1
Probab=30.81 E-value=1.3e+02 Score=20.45 Aligned_cols=74 Identities=9% Similarity=-0.056 Sum_probs=43.2
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCC-cHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETL-PEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFP 79 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~-~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP 79 (203)
||.+++|+.++. ..+-+++.+..-+.+ ...+..+++..-. ++..... + ....+.+.. |.|+|-+=
T Consensus 4 M~i~iiivsHG~--~A~gl~~~~~~i~G~--~~~i~ai~~~~~~~~~~~~~~--------i-~~~i~~~~~-~gvliLtD 69 (142)
T 3bed_A 4 MXPKLILMSHGR--MAEETLASTQMIVGE--LADAAIVSMTAEDGLSGTQAK--------L-AAILKEAGN-VPTLVLAD 69 (142)
T ss_dssp CCSEEEEEEETT--HHHHHHHHHHHHHCT--TCCCEEEEECTTTHHHHHHHH--------H-HHHHHHHCS-CCEEEEES
T ss_pred CcccEEEEcChH--HHHHHHHHHHHHcCC--CCCEEEEEecCCCCHHHHHHH--------H-HHHHHhcCC-CCEEEEEE
Confidence 436788887774 445566666555553 2357778876433 2222110 0 001345556 89999999
Q ss_pred ccCCccHHH
Q 028841 80 TRFGMMAAQ 88 (203)
Q Consensus 80 ~y~~~~~~~ 88 (203)
.|.|++.-.
T Consensus 70 l~GGSp~n~ 78 (142)
T 3bed_A 70 LXGGTPCNV 78 (142)
T ss_dssp STTSHHHHH
T ss_pred CCCCHHHHH
Confidence 999987655
No 305
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=30.71 E-value=60 Score=24.27 Aligned_cols=25 Identities=12% Similarity=-0.069 Sum_probs=18.4
Q ss_pred hhhhhcCeeEEeccccCCccHHHHHHHHHHhc
Q 028841 66 NELAEADGFVFGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~ 97 (203)
..+.++|.|||.||. .++.|++.+.
T Consensus 54 ~~l~~~d~vifTS~~-------aV~~~~~~l~ 78 (254)
T 4es6_A 54 LDLDRYCAVVVVSKP-------AARLGLERLD 78 (254)
T ss_dssp HTGGGCSEEEECSHH-------HHHHHHHHHH
T ss_pred HhccCCCEEEEECHH-------HHHHHHHHHH
Confidence 356889999999984 5666666654
No 306
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=30.70 E-value=91 Score=24.63 Aligned_cols=37 Identities=16% Similarity=0.122 Sum_probs=28.5
Q ss_pred eEEEEEcC--CcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 4 KVYIVYYS--MYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilii~~S--~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
||+++... ..|-.+..+..+++.+.+ . .+|+++....
T Consensus 2 kI~~v~~~~p~~gG~~~~~~~l~~~L~~-~-~~V~v~~~~~ 40 (413)
T 3oy2_A 2 KLIIVGAHSSVPSGYGRVMRAIVPRISK-A-HEVIVFGIHA 40 (413)
T ss_dssp EEEEEEECTTCCSHHHHHHHHHHHHHTT-T-SEEEEEEESC
T ss_pred eEEEecCCCCCCCCHHHHHHHHHHHHHh-c-CCeEEEeecC
Confidence 89988643 356677888889999988 5 8999887654
No 307
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*
Probab=30.57 E-value=32 Score=26.75 Aligned_cols=34 Identities=15% Similarity=0.038 Sum_probs=19.1
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQV 40 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l 40 (203)
|+++|+| .|. |-.+..++++.+.+ .|.+|..++-
T Consensus 1 M~~~vlV-tGa----tG~iG~~l~~~L~~-~g~~V~~~~r 34 (348)
T 1ek6_A 1 MAEKVLV-TGG----AGYIGSHTVLELLE-AGYLPVVIDN 34 (348)
T ss_dssp CCSEEEE-ETT----TSHHHHHHHHHHHH-TTCCEEEEEC
T ss_pred CCCEEEE-ECC----CCHHHHHHHHHHHH-CCCEEEEEec
Confidence 6556665 443 23344555555544 5778887764
No 308
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*
Probab=30.53 E-value=88 Score=23.25 Aligned_cols=81 Identities=9% Similarity=0.057 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhcccCC--CceEEEEEcCCCCcHHHhccCCCCCCCCCCC--CChhhhhhcCeeEEeccccCCccHHHHHH
Q 028841 16 VEKLAEEIKKGASSVE--GVEAKLWQVPETLPEEVLGKMSAPPKSDVPI--ITPNELAEADGFVFGFPTRFGMMAAQFKA 91 (203)
Q Consensus 16 T~~la~~i~~~~~~~~--g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~--~~~~~l~~aD~iiigsP~y~~~~~~~~k~ 91 (203)
|-.+...+.+.+.+ . |.+|..++-............-....-|+.+ ...+.+..+|.||..+......--...++
T Consensus 8 tG~iG~~l~~~L~~-~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~ 86 (286)
T 2zcu_A 8 TGQLGHYVIESLMK-TVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISSSEVGQRAPQHRN 86 (286)
T ss_dssp TSHHHHHHHHHHTT-TSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC--------CHHHH
T ss_pred CchHHHHHHHHHHh-hCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCCCCchHHHHHHHH
Confidence 34455666666655 4 7788877754332221111000000112211 11234567899988765321111123466
Q ss_pred HHHHhc
Q 028841 92 FLDATG 97 (203)
Q Consensus 92 ~ld~~~ 97 (203)
+++.+.
T Consensus 87 l~~a~~ 92 (286)
T 2zcu_A 87 VINAAK 92 (286)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666653
No 309
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=30.52 E-value=78 Score=22.20 Aligned_cols=75 Identities=17% Similarity=0.148 Sum_probs=42.2
Q ss_pred CceEEEEEcCC-----------cch--HHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhh
Q 028841 2 ATKVYIVYYSM-----------YGH--VEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNEL 68 (203)
Q Consensus 2 m~kilii~~S~-----------~g~--T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l 68 (203)
|+||+|+++.. +|+ -+.+.+.+.+...+ .|++++.+.-... .+.++. ..+..
T Consensus 4 m~~IlvlNGPNLNlLG~REP~iYG~~Tl~di~~~l~~~a~~-~g~~v~~~QSN~E--geLId~------------Ih~a~ 68 (151)
T 3u80_A 4 MTKVIVVNGPNLGRLGVRQPDVYGRQDLDTLRKLCAEWGKD-LGLEVEVRQTDDE--AEMVRW------------MHQAA 68 (151)
T ss_dssp CEEEEEEECSCC------------CHHHHHHHHHHHHHHHH-TTEEEEEEECSCH--HHHHHH------------HHHHH
T ss_pred CCEEEEEcCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHH-cCCEEEEEecCCH--HHHHHH------------HHHhh
Confidence 56899999983 454 33345556666655 6888877664321 111110 12234
Q ss_pred hhcCeeEEeccccCCccHHHHHHH
Q 028841 69 AEADGFVFGFPTRFGMMAAQFKAF 92 (203)
Q Consensus 69 ~~aD~iiigsP~y~~~~~~~~k~~ 92 (203)
.++|+|||=.--|-..-- .+++.
T Consensus 69 ~~~dgiiINpgA~THtSv-AlrDA 91 (151)
T 3u80_A 69 DEKTPVVMNPAAFTHYSY-ALADA 91 (151)
T ss_dssp HHTCCEEEECTTCCSCCH-HHHHH
T ss_pred hcCcEEEECcchhhhhhH-HHHHH
Confidence 568999998777763322 35555
No 310
>3c5y_A Ribose/galactose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.81A {Novosphingobium aromaticivorans}
Probab=30.42 E-value=41 Score=25.42 Aligned_cols=35 Identities=14% Similarity=0.166 Sum_probs=28.0
Q ss_pred eEEEEEcC-CcchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 4 KVYIVYYS-MYGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 4 kilii~~S-~~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
||.+|.+| ..|.+..|-+.|.+-|.+ .|. +++|+.
T Consensus 21 kiali~~~sqa~kN~~lKe~i~~~L~~-~G~--eV~D~G 56 (231)
T 3c5y_A 21 KIALIIENSQAAKNAVVHEALTTVAEP-LGH--KVFNYG 56 (231)
T ss_dssp EEEECCCGGGGGGHHHHHHHHHHHHGG-GTC--EEEECC
T ss_pred eEEEEecCCHhhhHHHHHHHHHHHHHH-CCC--EEEEeC
Confidence 88888765 678889999999999988 676 556774
No 311
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=30.41 E-value=63 Score=22.91 Aligned_cols=33 Identities=27% Similarity=0.177 Sum_probs=20.6
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEE
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAK 36 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~ 36 (203)
|..+|.||.+|.+- ..+++.+.+.+++ .|++++
T Consensus 1 ~~~~V~Iimgs~SD--~~v~~~a~~~l~~-~gi~~e 33 (159)
T 3rg8_A 1 MRPLVIILMGSSSD--MGHAEKIASELKT-FGIEYA 33 (159)
T ss_dssp -CCEEEEEESSGGG--HHHHHHHHHHHHH-TTCEEE
T ss_pred CCCeEEEEECcHHH--HHHHHHHHHHHHH-cCCCEE
Confidence 55789999999643 2345555556655 566554
No 312
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=30.09 E-value=1.4e+02 Score=20.82 Aligned_cols=48 Identities=6% Similarity=-0.012 Sum_probs=29.6
Q ss_pred hhhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 65 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+..+|++|+....-...-...++.|+..+... ...++++.++++-
T Consensus 87 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK 134 (213)
T 3cph_A 87 TAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEH----ANDEAQLLLVGNK 134 (213)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH----TTTCSEEEEEEEC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEEC
Confidence 55688999999987665443334455666655321 1246777777663
No 313
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=30.07 E-value=2.6e+02 Score=26.34 Aligned_cols=34 Identities=12% Similarity=0.084 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
||+||||+..+ .++..+.+.+++ .|+++..++-.
T Consensus 3 ~~kkVLIagrG------eia~riiraa~e-lGi~vVav~s~ 36 (1150)
T 3hbl_A 3 QIKKLLVANRG------EIAIRIFRAAAE-LDISTVAIYSN 36 (1150)
T ss_dssp CCCEEEECCCH------HHHHHHHHHHHH-TTCEEEEEECG
T ss_pred CCCEEEEECCC------HHHHHHHHHHHH-CCCEEEEEEcC
Confidence 35788885432 255666677777 68888887653
No 314
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Probab=29.85 E-value=29 Score=27.12 Aligned_cols=18 Identities=11% Similarity=-0.034 Sum_probs=14.7
Q ss_pred hhhhhhcCeeEEeccccC
Q 028841 65 PNELAEADGFVFGFPTRF 82 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~ 82 (203)
.+.+.++|.||+..|...
T Consensus 78 ~e~~~~aDvVi~~vp~~~ 95 (312)
T 3qsg_A 78 AEVAGECDVIFSLVTAQA 95 (312)
T ss_dssp HHHHHHCSEEEECSCTTT
T ss_pred HHHHhcCCEEEEecCchh
Confidence 345789999999999865
No 315
>2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A*
Probab=29.84 E-value=2.1e+02 Score=22.71 Aligned_cols=31 Identities=23% Similarity=0.188 Sum_probs=26.0
Q ss_pred hhhhhhcCeeEEeccccCCccHHHHHHHHHHh
Q 028841 65 PNELAEADGFVFGFPTRFGMMAAQFKAFLDAT 96 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~ 96 (203)
.+..+++|.+|+-+|- .+.-+..+|+|++.+
T Consensus 136 ~EAvk~AEi~IlftPf-G~~t~~Iakkii~~l 166 (358)
T 2b0j_A 136 REAVEGADIVITWLPK-GNKQPDIIKKFADAI 166 (358)
T ss_dssp HHHHTTCSEEEECCTT-CTTHHHHHHHHGGGS
T ss_pred HHHhcCCCEEEEecCC-CCCcHHHHHHHHhhC
Confidence 6788999999999997 444677889999987
No 316
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=29.80 E-value=95 Score=24.36 Aligned_cols=40 Identities=15% Similarity=0.130 Sum_probs=31.0
Q ss_pred ceEEEEEcCCc---chHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 3 TKVYIVYYSMY---GHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 3 ~kilii~~S~~---g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
+||+|++|-.+ .-+-.=+..+.+.+.+ .|+++..+++...
T Consensus 4 ~~v~vl~GG~s~e~~vSl~sa~~v~~al~~-~g~~v~~i~~~~~ 46 (346)
T 3se7_A 4 MKIGIIFGGVSEEHDISVKSAREVATHLGT-GVFEPFYLGITKS 46 (346)
T ss_dssp EEEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECTT
T ss_pred CEEEEEeeecCCCccHHHHHHHHHHHHhcc-cCCEEEEEEECCC
Confidence 48999998543 3456667888888888 7999999998653
No 317
>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}
Probab=29.79 E-value=23 Score=25.78 Aligned_cols=41 Identities=17% Similarity=0.126 Sum_probs=24.7
Q ss_pred hhhcCeeEEe-ccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 68 LAEADGFVFG-FPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 68 l~~aD~iiig-sP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..++|.||+. .+...... +.+..||.+.. -++|+++.++++
T Consensus 69 ~~~~D~livpGG~~~~~~~-~~l~~~l~~~~-------~~g~~iaaIC~G 110 (202)
T 3gra_A 69 LKELDLLVVCGGLRTPLKY-PELDRLLNDCA-------AHGMALGGLWNG 110 (202)
T ss_dssp GTTCSEEEEECCTTCCSCC-TTHHHHHHHHH-------HHTCEEEEETTH
T ss_pred CCCCCEEEEeCCCchhhcc-HHHHHHHHHHH-------hhCCEEEEECHH
Confidence 5789999883 33222222 56667776653 356777776654
No 318
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=29.79 E-value=1.1e+02 Score=22.11 Aligned_cols=43 Identities=28% Similarity=0.485 Sum_probs=26.5
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEe
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFG 77 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiig 77 (203)
+|+|+-+ .||-..+.+.+.+ .|+++.+++. .+++.++|+|||.
T Consensus 22 ~I~ii~~--~~~~~~~~~~l~~-----~g~~~~~~~~------------------------~~~l~~~d~iil~ 64 (208)
T 2iss_D 22 KIGVLGV--QGDVREHVEALHK-----LGVETLIVKL------------------------PEQLDMVDGLILP 64 (208)
T ss_dssp EEEEECS--SSCHHHHHHHHHH-----TTCEEEEECS------------------------GGGGGGCSEEEEC
T ss_pred EEEEEEC--CCchHHHHHHHHH-----CCCEEEEeCC------------------------hHHHhhCCEEEEC
Confidence 7888854 4555555555543 4667766542 1246789999994
No 319
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=29.65 E-value=51 Score=22.44 Aligned_cols=40 Identities=10% Similarity=0.025 Sum_probs=24.8
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
+++||+-+...+..++.+++...+.+.. .+.++.++.+.+
T Consensus 24 ~~~ILv~vD~~s~~s~~al~~A~~la~~-~~a~l~llhV~~ 63 (155)
T 3dlo_A 24 YMPIVVAVDKKSDRAERVLRFAAEEARL-RGVPVYVVHSLP 63 (155)
T ss_dssp CCCEEEECCSSSHHHHHHHHHHHHHHHH-HTCCEEEEEEEC
T ss_pred cCeEEEEECCCCHHHHHHHHHHHHHHHh-cCCEEEEEEEEc
Confidence 4678776643134456666666555554 466888888754
No 320
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}
Probab=29.65 E-value=41 Score=25.01 Aligned_cols=37 Identities=11% Similarity=-0.063 Sum_probs=21.2
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
|.|+.+|.|...|--..+++. +.+ .|.+|.+.+....
T Consensus 21 m~k~vlITGas~gIG~~la~~----l~~-~G~~V~~~~r~~~ 57 (251)
T 3orf_A 21 MSKNILVLGGSGALGAEVVKF----FKS-KSWNTISIDFREN 57 (251)
T ss_dssp -CCEEEEETTTSHHHHHHHHH----HHH-TTCEEEEEESSCC
T ss_pred cCCEEEEECCCCHHHHHHHHH----HHH-CCCEEEEEeCCcc
Confidence 335566666655544444444 444 5778888776543
No 321
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=29.58 E-value=83 Score=22.48 Aligned_cols=33 Identities=6% Similarity=-0.052 Sum_probs=22.1
Q ss_pred hhhhhhcCeeEEeccccCCccHHHHHHHHHHhc
Q 028841 65 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~ 97 (203)
...+..+|++|+..-.-...-...++.|+..+.
T Consensus 82 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~ 114 (221)
T 3gj0_A 82 DGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV 114 (221)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 456788999999876665444445566666653
No 322
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=29.56 E-value=96 Score=24.32 Aligned_cols=84 Identities=14% Similarity=0.188 Sum_probs=40.0
Q ss_pred eEEEEEcCC-cchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCC--CChhh--hhhcCeeE-Ee
Q 028841 4 KVYIVYYSM-YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPI--ITPNE--LAEADGFV-FG 77 (203)
Q Consensus 4 kilii~~S~-~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~--~~~~~--l~~aD~ii-ig 77 (203)
||+|++--+ .+.|+.....+..... ..++++++++.+-..... ..+.+.. ...+. ...+|++| .|
T Consensus 37 kI~ILnlmp~k~~te~qf~rlL~~~~--~qv~v~~~~~~~~~~~~~-------~~~hl~~~y~~f~~~~~~~~DglIITG 107 (301)
T 2vdj_A 37 KIAILNLMPTKQETEAQLLRLIGNTP--LQLDVHLLHMESHLSRNV-------AQEHLTSFYKTFRDIENEKFDGLIITG 107 (301)
T ss_dssp EEEEECCCSSHHHHHHHHHHHHTCSS--SCEEEEEECCCC-------------------CCEECHHHHTTSCEEEEEECC
T ss_pred eEEEEeCCCCcCchHHHHHHHhcCCC--CcEEEEEEeccCCCCCCc-------cHHHHhhcccCcccccccccCEEEECC
Confidence 899999754 4667654433333221 245666666543221100 0000000 01222 36789885 57
Q ss_pred ccccCCc---cH--HHHHHHHHHh
Q 028841 78 FPTRFGM---MA--AQFKAFLDAT 96 (203)
Q Consensus 78 sP~y~~~---~~--~~~k~~ld~~ 96 (203)
+|+-... +| ..++.++++.
T Consensus 108 ap~~~~~~ed~~yw~el~~li~~~ 131 (301)
T 2vdj_A 108 APVETLSFEEVDYWEELKRIMEYS 131 (301)
T ss_dssp CTTTTSCGGGSTTHHHHHHHHHHH
T ss_pred CCCcCCCcccCchHHHHHHHHHHH
Confidence 9963221 22 5677777776
No 323
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=29.56 E-value=96 Score=24.32 Aligned_cols=66 Identities=15% Similarity=0.158 Sum_probs=40.1
Q ss_pred chHHHHHHHHHHhcccCCCceEEEEEcCCCCc--HHHhccCCCCCCCCCCCCChhhhhhcCeeEEe-ccccCCccHHHHH
Q 028841 14 GHVEKLAEEIKKGASSVEGVEAKLWQVPETLP--EEVLGKMSAPPKSDVPIITPNELAEADGFVFG-FPTRFGMMAAQFK 90 (203)
Q Consensus 14 g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~--~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiig-sP~y~~~~~~~~k 90 (203)
|.+-..+...++.+++ .|++++++++....| .+.+ .+.+..++.+|+. -....|.+-..+.
T Consensus 210 G~~~~~a~~Aa~~L~~-~Gi~v~vi~~~~l~P~d~~~i---------------~~~~~~~~~vvvvEe~~~~Gg~g~~v~ 273 (324)
T 1w85_B 210 GAMVHESLKAAAELEK-EGISAEVVDLRTVQPLDIETI---------------IGSVEKTGRAIVVQEAQRQAGIAANVV 273 (324)
T ss_dssp TTHHHHHHHHHHHHHH-TTCCEEEEECSEEESCCHHHH---------------HHHHHHHSCEEEEEEEETTSSSHHHHH
T ss_pred cHHHHHHHHHHHHHHh-cCCCEEEEEeeeecCCCHHHH---------------HHHHhhCCcEEEEeCCCcCChHHHHHH
Confidence 4455566666677766 688999999876533 1111 2345566665554 2333577777777
Q ss_pred HHHHH
Q 028841 91 AFLDA 95 (203)
Q Consensus 91 ~~ld~ 95 (203)
.++..
T Consensus 274 ~~l~~ 278 (324)
T 1w85_B 274 AEINE 278 (324)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77654
No 324
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=29.32 E-value=61 Score=25.32 Aligned_cols=16 Identities=13% Similarity=-0.049 Sum_probs=13.5
Q ss_pred hhhhhhcCeeEEeccc
Q 028841 65 PNELAEADGFVFGFPT 80 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~ 80 (203)
.+.+.+||.||-++|.
T Consensus 198 ~~~~~~ADIVI~Avg~ 213 (285)
T 3p2o_A 198 SLYTRQADLIIVAAGC 213 (285)
T ss_dssp HHHHTTCSEEEECSSC
T ss_pred HHHhhcCCEEEECCCC
Confidence 4578999999999984
No 325
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=29.18 E-value=69 Score=23.07 Aligned_cols=36 Identities=17% Similarity=-0.000 Sum_probs=19.9
Q ss_pred CCceEEEEE-cCCcchHHHHHHHHHHhcccCCCceEEEEEc
Q 028841 1 MATKVYIVY-YSMYGHVEKLAEEIKKGASSVEGVEAKLWQV 40 (203)
Q Consensus 1 Mm~kilii~-~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l 40 (203)
||+||++.. || .+. .+..+.+ +.+.+ .|++|.++=-
T Consensus 1 ~~k~IllgvTGs-~aa-~k~~~l~-~~L~~-~g~~V~vv~T 37 (181)
T 1g63_A 1 MYGKLLICATAS-INV-ININHYI-VELKQ-HFDEVNILFS 37 (181)
T ss_dssp CCCCEEEEECSC-GGG-GGHHHHH-HHHTT-TSSCEEEEEC
T ss_pred CCCEEEEEEECH-HHH-HHHHHHH-HHHHH-CCCEEEEEEc
Confidence 788876554 44 332 2333333 44455 5788887743
No 326
>3mtq_A Putative phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) permease...; PTS system fructose IIA component; 1.70A {Klebsiella pneumoniae subsp}
Probab=29.17 E-value=1.5e+02 Score=20.77 Aligned_cols=75 Identities=7% Similarity=-0.028 Sum_probs=40.8
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
||.+++|+.+.. ..+.+++.+...+.+ . ..+..+++....+++..++ + ....+.+...|.|+|-+=.
T Consensus 20 ~~~~iII~sHG~--~A~gl~~s~~~i~G~-~-~~v~av~~~~~~~~~~~~~--------~-~~~i~~~~~~~gVLiLtDl 86 (159)
T 3mtq_A 20 MKRHYIFASHGS--FANGLLNSVELILGK-Q-PDIHTLCAYVEEEVDLTQQ--------V-EALVARFPAQDELIVITDI 86 (159)
T ss_dssp CCEEEEEEEETT--HHHHHHHHHHHHHCC-C-TTEEEEEETSCSSSCHHHH--------H-HHHHHTSCTTSEEEEEESC
T ss_pred cCceEEEEeCcH--HHHHHHHHHHHHcCC-C-CCeEEEECCCCCHHHHHHH--------H-HHHHHhcCCCCCEEEEEeC
Confidence 355666666554 345566666666654 2 2567777643222111110 0 0002334457899999999
Q ss_pred cCCccHHH
Q 028841 81 RFGMMAAQ 88 (203)
Q Consensus 81 y~~~~~~~ 88 (203)
|.|++.-.
T Consensus 87 ~GGSP~n~ 94 (159)
T 3mtq_A 87 FAGSVNNE 94 (159)
T ss_dssp TTSHHHHH
T ss_pred CCCCHHHH
Confidence 99986543
No 327
>3lfh_A Manxa, phosphotransferase system, mannose/fructose-speci component IIA; PTS; 1.80A {Thermoanaerobacter tengcongensis} SCOP: c.54.1.0
Probab=29.12 E-value=1.4e+02 Score=20.43 Aligned_cols=80 Identities=9% Similarity=-0.112 Sum_probs=43.9
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCC-cHHHhccCCCCCCCCCCCCChhhh-hhcCeeEEecc
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETL-PEEVLGKMSAPPKSDVPIITPNEL-AEADGFVFGFP 79 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~-~~~~~~~~~~~~~~d~~~~~~~~l-~~aD~iiigsP 79 (203)
|+++-||..|-....+.+++.+..-+.+ ...+..+++.... +++..++ + ....+.+ .+.|.|+|-+=
T Consensus 1 M~~igiii~sHG~~A~gl~~~~~~i~G~--~~~v~av~~~~~~~~~~~~~~--------i-~~~i~~~~~~~~gvliLtD 69 (144)
T 3lfh_A 1 MKEKFVLIITHGDFGKGLLSGAEVIIGK--QENVHTVGLNLGDNIEVVRKE--------V-EKIIKEKLQEDKEIIIVVD 69 (144)
T ss_dssp CCCEEEEEEEETTHHHHHHHHHHHHHCC--CSSEEEEEECTTCCHHHHHHH--------H-HHHHHHHHTTTCEEEEEES
T ss_pred CCcceEEEEeCcHHHHHHHHHHHHHcCC--CCcEEEEEccCCCCHHHHHHH--------H-HHHHHHhhCCCCcEEEEEe
Confidence 3445444444222445566666555554 2357888886543 3322210 0 0012345 55799999999
Q ss_pred ccCCccHHHHHHH
Q 028841 80 TRFGMMAAQFKAF 92 (203)
Q Consensus 80 ~y~~~~~~~~k~~ 92 (203)
.|.|++.-....+
T Consensus 70 l~GGSp~n~a~~l 82 (144)
T 3lfh_A 70 LFGGSPFNIALSM 82 (144)
T ss_dssp SSSSHHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 9999987665554
No 328
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A
Probab=28.97 E-value=35 Score=26.14 Aligned_cols=34 Identities=15% Similarity=0.061 Sum_probs=19.1
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQV 40 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l 40 (203)
|+++|+| .| -|-.+..++.+.+.+ .|.+|..++-
T Consensus 1 m~~~vlV-tG----atG~iG~~l~~~L~~-~g~~V~~~~r 34 (315)
T 2ydy_A 1 MNRRVLV-TG----ATGLLGRAVHKEFQQ-NNWHAVGCGF 34 (315)
T ss_dssp -CCEEEE-ET----TTSHHHHHHHHHHHT-TTCEEEEEC-
T ss_pred CCCeEEE-EC----CCcHHHHHHHHHHHh-CCCeEEEEcc
Confidence 5556666 33 334455666666655 5778777653
No 329
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=28.93 E-value=71 Score=25.00 Aligned_cols=52 Identities=12% Similarity=0.094 Sum_probs=31.9
Q ss_pred ceEEEEEcCCc-chHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 3 TKVYIVYYSMY-GHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 3 ~kilii~~S~~-g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
++++||-.|.. |.. +|..+. . .|..|++.+-...+ ..+.+.+||.||.+++.
T Consensus 160 k~vvVIG~s~iVG~p--~A~lL~----~-~gAtVtv~hs~t~~-------------------L~~~~~~ADIVI~Avg~ 212 (288)
T 1b0a_A 160 LNAVVIGASNIVGRP--MSMELL----L-AGCTTTVTHRFTKN-------------------LRHHVENADLLIVAVGK 212 (288)
T ss_dssp CEEEEECCCTTTHHH--HHHHHH----T-TTCEEEEECSSCSC-------------------HHHHHHHCSEEEECSCC
T ss_pred CEEEEECCChHHHHH--HHHHHH----H-CCCeEEEEeCCchh-------------------HHHHhccCCEEEECCCC
Confidence 46777766643 432 333332 2 46678877643322 14678999999999983
No 330
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=28.86 E-value=30 Score=26.81 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q 028841 177 PTELELEQAFHQGKHIAGIAK 197 (203)
Q Consensus 177 ~~~~~~~~~~~~g~~l~~~~~ 197 (203)
.+++..++++++++++++.+.
T Consensus 237 l~~~~~~~i~~~a~~~~~~l~ 257 (334)
T 2r85_A 237 LRESLLMDVIEAGERVVKAAE 257 (334)
T ss_dssp CCGGGHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHH
Confidence 345667888888888888774
No 331
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A
Probab=28.86 E-value=94 Score=25.55 Aligned_cols=81 Identities=14% Similarity=0.044 Sum_probs=47.7
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCce--EEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEe---c
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVE--AKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFG---F 78 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~--v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiig---s 78 (203)
+|.++-| .|-+..+.+.+.+.+.. .+++ .+.+++.... ..... +.+|+...+.++++|++++| |
T Consensus 9 ~i~~i~G--Dei~~e~~~~i~~v~~~-~~~~i~~~~~d~G~~~----~~~tg----~~lp~etl~aik~~~v~lkGa~~t 77 (402)
T 4aoy_A 9 PLVEMDG--DEMTRIIWRLIKENLLE-PYIELNTEYYDLGLEN----RDKTE----DQVTIDAARAIQKYGVGVKCATIT 77 (402)
T ss_dssp CEEEEEC--CHHHHHHHHHHHHHHTT-TTEECCEEEEECCHHH----HHHHT----THHHHHHHHHHHHHSEEEECCCCC
T ss_pred cEEEECC--CchHHHHHHHHHHHHHh-cCCCeEEEEEeCCHHH----HHhhC----CcCCHHHHHHHHHCCEEEECcccC
Confidence 3444444 37788889999888877 5655 4445553211 10000 01112225678899999987 7
Q ss_pred ccc-----------CCccHHHHHHHHHH
Q 028841 79 PTR-----------FGMMAAQFKAFLDA 95 (203)
Q Consensus 79 P~y-----------~~~~~~~~k~~ld~ 95 (203)
|.| |-++-..++.-||.
T Consensus 78 P~~~~~~~~~l~~~~~s~n~~LR~~Ldl 105 (402)
T 4aoy_A 78 PNAQRVEEYNLKKMWKSPNGTIRAILDG 105 (402)
T ss_dssp CCHHHHHHTTCSSCCCCHHHHHHHHHTC
T ss_pred CCccccccccccccccChHHHHHHHhCC
Confidence 776 34556677777775
No 332
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=28.77 E-value=44 Score=26.12 Aligned_cols=115 Identities=13% Similarity=0.109 Sum_probs=55.3
Q ss_pred eEEEEEcC-CcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccccC
Q 028841 4 KVYIVYYS-MYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRF 82 (203)
Q Consensus 4 kilii~~S-~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y~ 82 (203)
||.|| |. .-| ..++..++ + .|.+|.++|......+...+. ......+ ..+.+.++|.||+..|..
T Consensus 33 ~I~iI-G~G~mG--~~~a~~l~----~-~G~~V~~~dr~~~~~~~l~~~-g~~~~~~----~~e~~~~aDvVi~~vp~~- 98 (320)
T 4dll_A 33 KITFL-GTGSMG--LPMARRLC----E-AGYALQVWNRTPARAASLAAL-GATIHEQ----ARAAARDADIVVSMLENG- 98 (320)
T ss_dssp EEEEE-CCTTTH--HHHHHHHH----H-TTCEEEEECSCHHHHHHHHTT-TCEEESS----HHHHHTTCSEEEECCSSH-
T ss_pred EEEEE-CccHHH--HHHHHHHH----h-CCCeEEEEcCCHHHHHHHHHC-CCEeeCC----HHHHHhcCCEEEEECCCH-
Confidence 77776 33 223 23454444 3 577888887543221211111 0000011 134578899999999842
Q ss_pred CccHHHHHHHHH--HhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCC
Q 028841 83 GMMAAQFKAFLD--ATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGY 146 (203)
Q Consensus 83 ~~~~~~~k~~ld--~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~ 146 (203)
..++..+. .+.. ...+++.+ +.++.. ... ....+.+.+...|..++..++
T Consensus 99 ----~~~~~v~~~~~~~~----~l~~~~~v--i~~st~---~~~-~~~~~~~~~~~~g~~~~~~pv 150 (320)
T 4dll_A 99 ----AVVQDVLFAQGVAA----AMKPGSLF--LDMASI---TPR-EARDHAARLGALGIAHLDTPV 150 (320)
T ss_dssp ----HHHHHHHTTTCHHH----HCCTTCEE--EECSCC---CHH-HHHHHHHHHHHTTCEEEECCE
T ss_pred ----HHHHHHHcchhHHh----hCCCCCEE--EecCCC---CHH-HHHHHHHHHHHcCCEEEeCCC
Confidence 34555543 2211 01234432 222211 112 234456677777888887553
No 333
>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli}
Probab=28.74 E-value=1.8e+02 Score=23.87 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=21.0
Q ss_pred CCCCceEEEEecCCC-CCChHHHHHHHHHHHHHcCcEEe
Q 028841 105 LAGKPAGMFYSTGSQ-GGGQETTALTAITQLVHHGMIFV 142 (203)
Q Consensus 105 l~gK~~~~~~t~g~~-~~~~~~~~~~l~~~l~~~g~~~v 142 (203)
++|+++++++..... +.+... ...+...+...|+.+.
T Consensus 189 l~Glkva~vgd~~~~~G~~nnV-a~Sli~~~~~lG~~v~ 226 (399)
T 3q98_A 189 LKGKKIAMTWAYSPSYGKPLSV-PQGIIGLMTRFGMDVT 226 (399)
T ss_dssp GTTCEEEEECCCCSSCCCCTHH-HHHHHHHHGGGTCEEE
T ss_pred cCCCEEEEEEecccccCcchHH-HHHHHHHHHHcCCEEE
Confidence 678888887653211 222221 3446666677787764
No 334
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=28.42 E-value=1.8e+02 Score=21.62 Aligned_cols=37 Identities=22% Similarity=0.211 Sum_probs=27.3
Q ss_pred eEEEEEcCC-cchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 4 KVYIVYYSM-YGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 4 kilii~~S~-~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
+|.++..+. +.....+.+.+.+.+++ .|+++.+.+..
T Consensus 5 ~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~ 42 (297)
T 3rot_A 5 KYYLITHGSQDPYWTSLFQGAKKAAEE-LKVDLQILAPP 42 (297)
T ss_dssp EEEEECSCCCSHHHHHHHHHHHHHHHH-HTCEEEEECCS
T ss_pred EEEEEecCCCCchHHHHHHHHHHHHHH-hCcEEEEECCC
Confidence 566665553 45677888999888888 69888887754
No 335
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=28.17 E-value=1.4e+02 Score=20.10 Aligned_cols=56 Identities=20% Similarity=0.151 Sum_probs=32.1
Q ss_pred hhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCC
Q 028841 69 AEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 69 ~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~ 145 (203)
...|.+|+..|. ...+..+...++ .|.+..++-+ +.. . .++.+.....|+.+++..
T Consensus 68 ~~vDlvii~vp~--~~v~~v~~~~~~-----------~g~~~i~~~~-~~~--~-----~~l~~~a~~~Gi~~igpn 123 (138)
T 1y81_A 68 KDVDVIVFVVPP--KVGLQVAKEAVE-----------AGFKKLWFQP-GAE--S-----EEIRRFLEKAGVEYSFGR 123 (138)
T ss_dssp TTCCEEEECSCH--HHHHHHHHHHHH-----------TTCCEEEECT-TSC--C-----HHHHHHHHHHTCEEECSC
T ss_pred CCCCEEEEEeCH--HHHHHHHHHHHH-----------cCCCEEEEcC-ccH--H-----HHHHHHHHHCCCEEEcCC
Confidence 468999999993 344444433222 2334333333 221 1 235667778899999864
No 336
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0
Probab=28.16 E-value=70 Score=24.36 Aligned_cols=70 Identities=13% Similarity=0.052 Sum_probs=32.2
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCC-CCChhhhhhcCeeEEecc
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVP-IITPNELAEADGFVFGFP 79 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~-~~~~~~l~~aD~iiigsP 79 (203)
++||| +|-|-.|...+.+.|.+ .| .+..++-............-.....|+. +...+.+...|.||-...
T Consensus 2 ~~vlV-----TGatG~iG~~l~~~L~~-~g-~~v~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~d~vih~a~ 72 (313)
T 3ehe_A 2 SLIVV-----TGGAGFIGSHVVDKLSE-SN-EIVVIDNLSSGNEEFVNEAARLVKADLAADDIKDYLKGAEEVWHIAA 72 (313)
T ss_dssp -CEEE-----ETTTSHHHHHHHHHHTT-TS-CEEEECCCSSCCGGGSCTTEEEECCCTTTSCCHHHHTTCSEEEECCC
T ss_pred CEEEE-----ECCCchHHHHHHHHHHh-CC-CEEEEEcCCCCChhhcCCCcEEEECcCChHHHHHHhcCCCEEEECCC
Confidence 47776 34445566677777766 57 4444433222111111000000011221 123456778999987654
No 337
>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}
Probab=28.02 E-value=82 Score=26.28 Aligned_cols=75 Identities=11% Similarity=0.105 Sum_probs=41.6
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHH---HhccCCCCCCCCCC--CCChhhhhhcCeeEEec
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEE---VLGKMSAPPKSDVP--IITPNELAEADGFVFGF 78 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~---~~~~~~~~~~~d~~--~~~~~~l~~aD~iiigs 78 (203)
||.||=+...|.|..++..++..-.- .| ++.++|+.+...+. ....... ....+. ....+.+.+||.||+..
T Consensus 7 KIaVIGaGs~g~g~~la~~l~~~~~~-~g-eV~L~Di~~e~le~~~~~~~~l~~-~~~~I~~TtD~~eAl~dADfVI~ai 83 (450)
T 3fef_A 7 KIAYIGGGSQGWARSLMSDLSIDERM-SG-TVALYDLDFEAAQKNEVIGNHSGN-GRWRYEAVSTLKKALSAADIVIISI 83 (450)
T ss_dssp EEEEETTTCSSHHHHHHHHHHHCSSC-CE-EEEEECSSHHHHHHHHHHHTTSTT-SCEEEEEESSHHHHHTTCSEEEECC
T ss_pred EEEEECCChhHhHHHHHHHHHhcccc-CC-eEEEEeCCHHHHHHHHHHHHHHhc-cCCeEEEECCHHHHhcCCCEEEecc
Confidence 77776443456778888888753322 36 89999886422111 1111000 000000 00135789999999999
Q ss_pred ccc
Q 028841 79 PTR 81 (203)
Q Consensus 79 P~y 81 (203)
++.
T Consensus 84 rvG 86 (450)
T 3fef_A 84 LPG 86 (450)
T ss_dssp CSS
T ss_pred ccC
Confidence 864
No 338
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=28.00 E-value=1.3e+02 Score=25.09 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=24.0
Q ss_pred CCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCc
Q 028841 104 QLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYT 147 (203)
Q Consensus 104 ~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~ 147 (203)
.+.||++++++-. .... .+.+.|...||.++..+..
T Consensus 329 ~l~GKrv~i~~~~-----~~~~---~l~~~L~ElGmevv~~gt~ 364 (483)
T 3pdi_A 329 RLEGKRVLLYTGG-----VKSW---SVVSALQDLGMKVVATGTK 364 (483)
T ss_dssp HHTTCEEEEECSS-----SCHH---HHHHHHHHHTCEEEEECBS
T ss_pred HhcCCEEEEECCC-----chHH---HHHHHHHHCCCEEEEEecC
Confidence 4789999986431 1222 2556778899999976543
No 339
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1
Probab=27.98 E-value=87 Score=17.69 Aligned_cols=34 Identities=3% Similarity=0.059 Sum_probs=20.3
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
++.+++.+..++.+++...+.+ .|++++.+|+.+
T Consensus 2 ~i~~y~~~~C~~C~~~~~~l~~-----~~i~~~~~di~~ 35 (75)
T 1r7h_A 2 SITLYTKPACVQCTATKKALDR-----AGLAYNTVDISL 35 (75)
T ss_dssp CEEEEECTTCHHHHHHHHHHHH-----TTCCCEEEETTT
T ss_pred eEEEEeCCCChHHHHHHHHHHH-----cCCCcEEEECCC
Confidence 4544333445677776555543 366888888764
No 340
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=27.85 E-value=52 Score=23.09 Aligned_cols=32 Identities=25% Similarity=0.281 Sum_probs=18.6
Q ss_pred CCceEEEEEcCCcc--hHHHHHHHHHHhcccCCCceE
Q 028841 1 MATKVYIVYYSMYG--HVEKLAEEIKKGASSVEGVEA 35 (203)
Q Consensus 1 Mm~kilii~~S~~g--~T~~la~~i~~~~~~~~g~~v 35 (203)
|.+||-+ .+|..| .....-+.+.+.|++ .| +|
T Consensus 1 m~mkIYl-AGP~f~~~e~~~~~~~i~~~L~~-~G-~V 34 (152)
T 4fyk_A 1 MRRSVYF-CGSIRGGREDQALYARIVSRLRR-YG-KV 34 (152)
T ss_dssp --CEEEE-ECCSTTCCTTHHHHHHHHHHHTT-TS-EE
T ss_pred CCceEEE-ECCCCCcHHHHHHHHHHHHHHHH-cC-cc
Confidence 4334443 566544 333577888899988 67 44
No 341
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=27.84 E-value=1.2e+02 Score=21.18 Aligned_cols=73 Identities=10% Similarity=-0.070 Sum_probs=36.1
Q ss_pred ceEEEEEcCC--------cchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhh--hcC
Q 028841 3 TKVYIVYYSM--------YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELA--EAD 72 (203)
Q Consensus 3 ~kilii~~S~--------~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~--~aD 72 (203)
.++.||..+. +.|+..+++.+ ++ .|+++..+.+-.-+++.+.+. ..+.+. ++|
T Consensus 2 ~~v~Ii~tGdEl~~G~i~D~n~~~l~~~l----~~-~G~~v~~~~iv~Dd~~~i~~~------------l~~~~~~~~~D 64 (164)
T 2is8_A 2 FRVGILTVSDKGFRGERQDTTHLAIREVL----AG-GPFEVAAYELVPDEPPMIKKV------------LRLWADREGLD 64 (164)
T ss_dssp EEEEEEEECHHHHHTSSCCCHHHHHHHHH----TT-SSEEEEEEEEECSCHHHHHHH------------HHHHHHTSCCS
T ss_pred cEEEEEEEcCcccCCCcccchHHHHHHHH----HH-CCCeEeEEEEcCCCHHHHHHH------------HHHHHhcCCCC
Confidence 3887776541 34555554444 44 577765544433233222110 122344 588
Q ss_pred eeEEe---ccccCCccHHHHHHH
Q 028841 73 GFVFG---FPTRFGMMAAQFKAF 92 (203)
Q Consensus 73 ~iiig---sP~y~~~~~~~~k~~ 92 (203)
.||.. +|.-.--.+..+..+
T Consensus 65 lVittGG~g~g~~D~t~ea~~~~ 87 (164)
T 2is8_A 65 LILTNGGTGLAPRDRTPEATREL 87 (164)
T ss_dssp EEEEESCCSSSTTCCHHHHHHTT
T ss_pred EEEEcCCCCCCCCCChHHHHHHH
Confidence 88776 444444445555544
No 342
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}
Probab=27.83 E-value=31 Score=26.37 Aligned_cols=35 Identities=9% Similarity=0.125 Sum_probs=19.5
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
|++|+| .|. |-.+...+.+.+.+ .|.+|..++-..
T Consensus 7 ~~~vlV-tGa----tG~iG~~l~~~L~~-~g~~V~~~~r~~ 41 (321)
T 3vps_A 7 KHRILI-TGG----AGFIGGHLARALVA-SGEEVTVLDDLR 41 (321)
T ss_dssp CCEEEE-ETT----TSHHHHHHHHHHHH-TTCCEEEECCCS
T ss_pred CCeEEE-ECC----CChHHHHHHHHHHH-CCCEEEEEecCC
Confidence 345655 333 33455555555555 577887776543
No 343
>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*
Probab=27.79 E-value=1e+02 Score=26.34 Aligned_cols=17 Identities=6% Similarity=-0.005 Sum_probs=14.4
Q ss_pred hhhhhhcCeeEEecccc
Q 028841 65 PNELAEADGFVFGFPTR 81 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y 81 (203)
.+.+.+||.||+..|..
T Consensus 116 aEAa~~ADVVILaVP~~ 132 (525)
T 3fr7_A 116 WETVSGSDLVLLLISDA 132 (525)
T ss_dssp HHHHHHCSEEEECSCHH
T ss_pred HHHHhcCCEEEECCChH
Confidence 45678999999999984
No 344
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=27.76 E-value=1.3e+02 Score=19.88 Aligned_cols=45 Identities=4% Similarity=-0.042 Sum_probs=27.4
Q ss_pred hhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEe
Q 028841 67 ELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYS 115 (203)
Q Consensus 67 ~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t 115 (203)
.+..+|++|+....-...-...++.|+..+... ...+.++.++++
T Consensus 75 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~piilv~n 119 (170)
T 1z08_A 75 YYRDSNGAILVYDITDEDSFQKVKNWVKELRKM----LGNEICLCIVGN 119 (170)
T ss_dssp SSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH----HGGGSEEEEEEE
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCeEEEEEE
Confidence 467899999987665544334556666655321 124567777665
No 345
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=27.75 E-value=1.5e+02 Score=20.76 Aligned_cols=39 Identities=18% Similarity=0.177 Sum_probs=29.7
Q ss_pred eEEEEEcCCcc-hHHHHHHHHHHhcccCCC-c---eEEEEEcCCC
Q 028841 4 KVYIVYYSMYG-HVEKLAEEIKKGASSVEG-V---EAKLWQVPET 43 (203)
Q Consensus 4 kilii~~S~~g-~T~~la~~i~~~~~~~~g-~---~v~~~~l~~~ 43 (203)
|+.||.+.-+. -|..+.+...+.+.+ .| + +++++.++-.
T Consensus 14 ri~IV~arfn~~I~~~Ll~gA~~~l~~-~G~v~~~~i~v~~VPGa 57 (156)
T 3nq4_A 14 RVAITIARFNQFINDSLLDGAVDALTR-IGQVKDDNITVVWVPGA 57 (156)
T ss_dssp CEEEEEESTTHHHHHHHHHHHHHHHHH-TTCCCTTSEEEEEESST
T ss_pred EEEEEEeeCcHHHHHHHHHHHHHHHHH-cCCCcccceEEEEcCcH
Confidence 78888777554 588888888888887 67 4 6888888664
No 346
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=27.63 E-value=1.4e+02 Score=20.15 Aligned_cols=56 Identities=11% Similarity=-0.098 Sum_probs=33.3
Q ss_pred hhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCC
Q 028841 69 AEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 69 ~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~ 145 (203)
...|.+|+..| ...++..++..++. |-+..++ ..+.. . .++.+.....|+.++|..
T Consensus 69 ~~~Dlvii~vp--~~~v~~v~~~~~~~-----------g~~~i~i-~~~~~---~----~~l~~~a~~~Gi~~igpn 124 (145)
T 2duw_A 69 EKVDMVDVFRN--SEAAWGVAQEAIAI-----------GAKTLWL-QLGVI---N----EQAAVLAREAGLSVVMDR 124 (145)
T ss_dssp SCCSEEECCSC--STHHHHHHHHHHHH-----------TCCEEEC-CTTCC---C----HHHHHHHHTTTCEEECSC
T ss_pred CCCCEEEEEeC--HHHHHHHHHHHHHc-----------CCCEEEE-cCChH---H----HHHHHHHHHcCCEEEcCC
Confidence 36799999999 35566666554442 2222222 22221 2 236677788999999865
No 347
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=27.58 E-value=97 Score=24.38 Aligned_cols=52 Identities=12% Similarity=0.059 Sum_probs=32.2
Q ss_pred ceEEEEEcCCc-chHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 3 TKVYIVYYSMY-GHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 3 ~kilii~~S~~-g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
++++||-.|.. |.. +|..+.. .|..|++.+-...+ ..+.+.+||.||-+++.
T Consensus 166 k~vvVIG~s~iVG~p--~A~lL~~-----~gAtVtv~hs~t~~-------------------L~~~~~~ADIVI~Avg~ 218 (301)
T 1a4i_A 166 RHAVVVGRSKIVGAP--MHDLLLW-----NNATVTTCHSKTAH-------------------LDEEVNKGDILVVATGQ 218 (301)
T ss_dssp CEEEEECCCTTTHHH--HHHHHHH-----TTCEEEEECTTCSS-------------------HHHHHTTCSEEEECCCC
T ss_pred CEEEEECCCchHHHH--HHHHHHh-----CCCeEEEEECCccc-------------------HHHHhccCCEEEECCCC
Confidence 36777766642 432 3444332 35678877633221 24678999999999988
No 348
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=27.45 E-value=16 Score=27.26 Aligned_cols=25 Identities=20% Similarity=0.105 Sum_probs=19.1
Q ss_pred hhhhhcCeeEEeccccCCccHHHHHHHHHHhc
Q 028841 66 NELAEADGFVFGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~ 97 (203)
..+.++|.|||.||. .++.|++.+.
T Consensus 46 ~~l~~~d~viftS~~-------aV~~~~~~l~ 70 (240)
T 3mw8_A 46 DELSRADILIFISTS-------AVSFATPWLK 70 (240)
T ss_dssp HHHTTCSEEEECSHH-------HHHHHHHHHT
T ss_pred HHhcCCCEEEEECHH-------HHHHHHHHHH
Confidence 457889999999974 5677777664
No 349
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=27.13 E-value=51 Score=22.52 Aligned_cols=26 Identities=12% Similarity=0.174 Sum_probs=17.0
Q ss_pred CCceEEEEEcC-CcchHHHHHHHHHHhcc
Q 028841 1 MATKVYIVYYS-MYGHVEKLAEEIKKGAS 28 (203)
Q Consensus 1 Mm~kilii~~S-~~g~T~~la~~i~~~~~ 28 (203)
||+ +++|.|. ..|.| .+++.+++.+.
T Consensus 1 m~~-~I~l~G~~GsGKs-T~a~~La~~lg 27 (173)
T 1e6c_A 1 MTE-PIFMVGARGCGMT-TVGRELARALG 27 (173)
T ss_dssp CCC-CEEEESCTTSSHH-HHHHHHHHHHT
T ss_pred CCc-eEEEECCCCCCHH-HHHHHHHHHhC
Confidence 664 4445554 57776 47888888763
No 350
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2
Probab=27.10 E-value=39 Score=26.14 Aligned_cols=33 Identities=24% Similarity=0.250 Sum_probs=19.1
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEc
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQV 40 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l 40 (203)
|| +||| .| -|-.|...+.+.+.+ .|.+|..++-
T Consensus 1 M~-~vlV-TG----atG~iG~~l~~~L~~-~g~~V~~~~r 33 (347)
T 1orr_A 1 MA-KLLI-TG----GCGFLGSNLASFALS-QGIDLIVFDN 33 (347)
T ss_dssp -C-EEEE-ET----TTSHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred Cc-EEEE-eC----CCchhHHHHHHHHHh-CCCEEEEEeC
Confidence 54 6766 33 333455555555555 5778888764
No 351
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=27.10 E-value=1e+02 Score=21.24 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=23.9
Q ss_pred eEEEEEcC-CcchHHHHHHHHHHhcccCCCceEEEEEc
Q 028841 4 KVYIVYYS-MYGHVEKLAEEIKKGASSVEGVEAKLWQV 40 (203)
Q Consensus 4 kilii~~S-~~g~T~~la~~i~~~~~~~~g~~v~~~~l 40 (203)
++++|.|. ..|.| .+++.+++.+.. .|..+..++.
T Consensus 2 ~~I~i~G~~GsGKs-T~~~~L~~~l~~-~g~~~~~~~~ 37 (194)
T 1nks_A 2 KIGIVTGIPGVGKS-TVLAKVKEILDN-QGINNKIINY 37 (194)
T ss_dssp EEEEEEECTTSCHH-HHHHHHHHHHHT-TTCCEEEEEH
T ss_pred eEEEEECCCCCCHH-HHHHHHHHHHHh-cCceEEEEEC
Confidence 45555654 57876 578888888876 5777777753
No 352
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=27.06 E-value=1.7e+02 Score=20.77 Aligned_cols=75 Identities=13% Similarity=0.002 Sum_probs=41.6
Q ss_pred eEEEEEcCC--------cchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeE
Q 028841 4 KVYIVYYSM--------YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFV 75 (203)
Q Consensus 4 kilii~~S~--------~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ii 75 (203)
++.||..+. ..|+..+++.+.+ .|+++..+.+-.-+++.+.+. ..+.+.++|.||
T Consensus 5 ~v~IistGdEll~G~i~DtN~~~l~~~L~~-----~G~~v~~~~iv~Dd~~~I~~~------------l~~a~~~~DlVi 67 (172)
T 3kbq_A 5 NASVITVGNEILKGRTVNTNAAFIGNFLTY-----HGYQVRRGFVVMDDLDEIGWA------------FRVALEVSDLVV 67 (172)
T ss_dssp EEEEEEECHHHHTTSSCCHHHHHHHHHHHH-----TTCEEEEEEEECSCHHHHHHH------------HHHHHHHCSEEE
T ss_pred EEEEEEEcccccCCcEEeHHHHHHHHHHHH-----CCCEEEEEEEeCCCHHHHHHH------------HHHHHhcCCEEE
Confidence 676666441 2455555555433 477766555433233322211 123456799998
Q ss_pred Ee---ccccCCccHHHHHHHHHH
Q 028841 76 FG---FPTRFGMMAAQFKAFLDA 95 (203)
Q Consensus 76 ig---sP~y~~~~~~~~k~~ld~ 95 (203)
.. +|.-.--.+..+..++++
T Consensus 68 ttGG~g~~~~D~T~ea~a~~~~~ 90 (172)
T 3kbq_A 68 SSGGLGPTFDDMTVEGFAKCIGQ 90 (172)
T ss_dssp EESCCSSSTTCCHHHHHHHHHTC
T ss_pred EcCCCcCCcccchHHHHHHHcCC
Confidence 86 566666666667766664
No 353
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=27.02 E-value=75 Score=24.72 Aligned_cols=38 Identities=8% Similarity=0.144 Sum_probs=28.1
Q ss_pred ceEEEEEcC--C-cchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 3 TKVYIVYYS--M-YGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 3 ~kilii~~S--~-~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
+||+++..+ + .|-.+..+..+++.+ .|.+|.++.....
T Consensus 5 mkIl~v~~~~~p~~gG~~~~~~~l~~~L---~g~~v~v~~~~~~ 45 (394)
T 3okp_A 5 RKTLVVTNDFPPRIGGIQSYLRDFIATQ---DPESIVVFASTQN 45 (394)
T ss_dssp CCEEEEESCCTTSCSHHHHHHHHHHTTS---CGGGEEEEEECSS
T ss_pred ceEEEEeCccCCccchHHHHHHHHHHHh---cCCeEEEEECCCC
Confidence 589998763 2 466777888888888 2678888877654
No 354
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}
Probab=26.97 E-value=40 Score=25.96 Aligned_cols=34 Identities=15% Similarity=0.105 Sum_probs=19.0
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
|| +|+| .| -|-.+...+.+.+.+ .|.+|..++-.
T Consensus 1 M~-~ilV-tG----atG~iG~~l~~~L~~-~g~~V~~~~r~ 34 (330)
T 2c20_A 1 MN-SILI-CG----GAGYIGSHAVKKLVD-EGLSVVVVDNL 34 (330)
T ss_dssp -C-EEEE-ET----TTSHHHHHHHHHHHH-TTCEEEEEECC
T ss_pred CC-EEEE-EC----CCcHHHHHHHHHHHh-CCCEEEEEeCC
Confidence 54 7776 33 333455555555555 57788777643
No 355
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=26.90 E-value=51 Score=25.79 Aligned_cols=23 Identities=13% Similarity=-0.022 Sum_probs=15.9
Q ss_pred hcCeeEEeccccCCccHHHHHHHHH
Q 028841 70 EADGFVFGFPTRFGMMAAQFKAFLD 94 (203)
Q Consensus 70 ~aD~iiigsP~y~~~~~~~~k~~ld 94 (203)
+.|+|++++|.... ....+..++
T Consensus 66 ~vD~V~i~tp~~~H--~~~~~~al~ 88 (334)
T 3ohs_X 66 NVEVAYVGTQHPQH--KAAVMLCLA 88 (334)
T ss_dssp TCCEEEECCCGGGH--HHHHHHHHH
T ss_pred CCCEEEECCCcHHH--HHHHHHHHh
Confidence 58999999998864 234444444
No 356
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=26.72 E-value=72 Score=24.79 Aligned_cols=52 Identities=13% Similarity=0.034 Sum_probs=31.0
Q ss_pred ceEEEEEcCC-cchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 3 TKVYIVYYSM-YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 3 ~kilii~~S~-~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
++++||-.|. -|. -+|..+.. .|..|++.+-...+ ..+.+.+||.||-++|.
T Consensus 151 k~vvVvG~s~iVG~--plA~lL~~-----~gAtVtv~~~~t~~-------------------L~~~~~~ADIVI~Avg~ 203 (276)
T 3ngx_A 151 NTVTIVNRSPVVGR--PLSMMLLN-----RNYTVSVCHSKTKD-------------------IGSMTRSSKIVVVAVGR 203 (276)
T ss_dssp CEEEEECCCTTTHH--HHHHHHHH-----TTCEEEEECTTCSC-------------------HHHHHHHSSEEEECSSC
T ss_pred CEEEEEcCChHHHH--HHHHHHHH-----CCCeEEEEeCCccc-------------------HHHhhccCCEEEECCCC
Confidence 3566665564 242 24444332 36677777543221 14578999999999975
No 357
>2g2q_A Glutaredoxin-2; thioredoxin-fold, oxidoreductase, poxvirus; 2.50A {Vaccinia virus}
Probab=26.68 E-value=1.2e+02 Score=20.40 Aligned_cols=37 Identities=14% Similarity=0.229 Sum_probs=21.7
Q ss_pred CceEEEEEcCCc-chHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 2 ATKVYIVYYSMY-GHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 2 m~kilii~~S~~-g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
|++.||+.|=+. |-.+.+-+.+ +.++. ..++-.+++-
T Consensus 1 mK~tLILfGKP~C~vCe~~s~~l-~~led--eY~ilrVNIl 38 (124)
T 2g2q_A 1 MKNVLIIFGKPYCSICENVSDAV-EELKS--EYDILHVDIL 38 (124)
T ss_dssp CCEEEEEEECTTCHHHHHHHHHH-HTTTT--TEEEEEEECC
T ss_pred CCceEEEeCCCccHHHHHHHHHH-HHhhc--cccEEEEEee
Confidence 679999999764 5555444443 66654 2344444443
No 358
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=26.51 E-value=1e+02 Score=24.09 Aligned_cols=40 Identities=15% Similarity=0.129 Sum_probs=28.6
Q ss_pred hhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEE
Q 028841 69 AEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFY 114 (203)
Q Consensus 69 ~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~ 114 (203)
..+|++++.+|-|+.--...+..++..+.. -.+.|+.++-
T Consensus 109 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~------a~~lPiilYn 148 (304)
T 3l21_A 109 EGAHGLLVVTPYYSKPPQRGLQAHFTAVAD------ATELPMLLYD 148 (304)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHT------SCSSCEEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHH------hcCCCEEEEe
Confidence 468999999999987666677777777642 2256666554
No 359
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=26.47 E-value=73 Score=22.91 Aligned_cols=33 Identities=15% Similarity=-0.060 Sum_probs=19.7
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEE
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAK 36 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~ 36 (203)
|.++|.||.+|..- ..+++.+.+.+++ .|++++
T Consensus 11 m~~~V~IimGS~SD--~~v~~~a~~~L~~-~Gi~~e 43 (174)
T 3kuu_A 11 AGVKIAIVMGSKSD--WATMQFAADVLTT-LNVPFH 43 (174)
T ss_dssp CCCCEEEEESSGGG--HHHHHHHHHHHHH-TTCCEE
T ss_pred CCCcEEEEECcHHH--HHHHHHHHHHHHH-cCCCEE
Confidence 34579999999643 2345555555555 465544
No 360
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=26.35 E-value=1.9e+02 Score=21.17 Aligned_cols=38 Identities=13% Similarity=0.099 Sum_probs=28.5
Q ss_pred eEEEEEcCC-cchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 4 KVYIVYYSM-YGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilii~~S~-~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
+|.++..+. +.....+.+.+.+.+.+ .|.++.+.+...
T Consensus 9 ~Igvi~~~~~~~~~~~~~~gi~~~~~~-~g~~~~~~~~~~ 47 (276)
T 3jy6_A 9 LIAVIVANIDDYFSTELFKGISSILES-RGYIGVLFDANA 47 (276)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHT-TTCEEEEEECTT
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHH-CCCEEEEEeCCC
Confidence 566666553 45677899999999988 799988877654
No 361
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*
Probab=26.35 E-value=43 Score=24.43 Aligned_cols=64 Identities=9% Similarity=0.093 Sum_probs=32.9
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCC-CCChhhhhhcCeeEEecccc
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVP-IITPNELAEADGFVFGFPTR 81 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~-~~~~~~l~~aD~iiigsP~y 81 (203)
||.|| | .|+ +...++..+.+ .|.++.+++-........... +.. ....+.+.++|.||+++|..
T Consensus 30 ~I~ii-G--~G~---~G~~la~~l~~-~g~~V~~~~r~~~~~~~~~~~-------g~~~~~~~~~~~~~DvVi~av~~~ 94 (215)
T 2vns_A 30 KVGIL-G--SGD---FARSLATRLVG-SGFKVVVGSRNPKRTARLFPS-------AAQVTFQEEAVSSPEVIFVAVFRE 94 (215)
T ss_dssp CEEEE-C--CSH---HHHHHHHHHHH-TTCCEEEEESSHHHHHHHSBT-------TSEEEEHHHHTTSCSEEEECSCGG
T ss_pred EEEEE-c--cCH---HHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHc-------CCceecHHHHHhCCCEEEECCChH
Confidence 66665 3 333 34444555544 577887776532211111110 000 00124567899999999964
No 362
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=26.23 E-value=98 Score=22.72 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=25.0
Q ss_pred CCceEEEEEcCC--cchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 1 MATKVYIVYYSM--YGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 1 Mm~kilii~~S~--~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
|| |++.|++.. .|.| .++-.++..+.+ .|..|-++|+..
T Consensus 1 M~-~vi~v~s~kgGvGKT-t~a~~LA~~la~-~g~~VlliD~D~ 41 (260)
T 3q9l_A 1 MA-RIIVVTSGKGGVGKT-TSSAAIATGLAQ-KGKKTVVIDFAI 41 (260)
T ss_dssp -C-EEEEEECSSTTSSHH-HHHHHHHHHHHH-TTCCEEEEECCC
T ss_pred CC-eEEEEECCCCCCcHH-HHHHHHHHHHHh-CCCcEEEEECCC
Confidence 55 666666554 3555 355566666666 588999999875
No 363
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=26.10 E-value=2.1e+02 Score=21.54 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=26.0
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEc
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQV 40 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l 40 (203)
+||.+|+++...++..-.+.+.+.+++ .|.++....+
T Consensus 141 ~~I~~i~~~~~~~~~~r~~g~~~al~~-~gi~~~~~~~ 177 (302)
T 2qh8_A 141 KSIGVVYNPGEANAVSLMELLKLSAAK-HGIKLVEATA 177 (302)
T ss_dssp CEEEEEECTTCHHHHHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred cEEEEEecCCCcchHHHHHHHHHHHHH-cCCEEEEEec
Confidence 588898887554455566777888877 6877665544
No 364
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0
Probab=26.03 E-value=1e+02 Score=22.56 Aligned_cols=37 Identities=16% Similarity=0.033 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
|+.|+.+|.|...|--+.+++.++ + .|..|.+.+...
T Consensus 1 Ms~k~vlVTGas~GIG~a~a~~l~----~-~G~~V~~~~r~~ 37 (235)
T 3l6e_A 1 MSLGHIIVTGAGSGLGRALTIGLV----E-RGHQVSMMGRRY 37 (235)
T ss_dssp --CCEEEEESTTSHHHHHHHHHHH----H-TTCEEEEEESCH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHH----H-CCCEEEEEECCH
Confidence 545677777765655555555554 4 577887776543
No 365
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=25.99 E-value=71 Score=24.97 Aligned_cols=16 Identities=19% Similarity=0.194 Sum_probs=13.5
Q ss_pred hhhhhhcCeeEEeccc
Q 028841 65 PNELAEADGFVFGFPT 80 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~ 80 (203)
.+.+.+||.||-++|.
T Consensus 199 ~~~~~~ADIVI~Avg~ 214 (286)
T 4a5o_A 199 ADHVSRADLVVVAAGK 214 (286)
T ss_dssp HHHHHTCSEEEECCCC
T ss_pred HHHhccCCEEEECCCC
Confidence 4578999999999974
No 366
>2gfq_A UPF0204 protein PH0006; structural genomics, PSI, Pro structure initiative, midwest center for structural genomic unknown function; 1.75A {Pyrococcus horikoshii} SCOP: c.56.7.1
Probab=25.79 E-value=1.6e+02 Score=23.10 Aligned_cols=24 Identities=4% Similarity=-0.045 Sum_probs=18.1
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhc
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGA 27 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~ 27 (203)
.++||+....--+..+++.+.+..
T Consensus 23 m~~iV~S~~DpAs~~i~~~L~~~~ 46 (298)
T 2gfq_A 23 MKVIMTTKVDKASMNIMNKLIENF 46 (298)
T ss_dssp CEEEEEETTCHHHHHHHHHHHHHS
T ss_pred EEEEEEeCCCchhHHHHHHHHHhc
Confidence 377777777777778888888775
No 367
>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A
Probab=25.76 E-value=67 Score=21.99 Aligned_cols=34 Identities=21% Similarity=0.247 Sum_probs=21.4
Q ss_pred EEEEcCCc-chHHHHHHHHHHhcccCCCceEEEEEcCCCC
Q 028841 6 YIVYYSMY-GHVEKLAEEIKKGASSVEGVEAKLWQVPETL 44 (203)
Q Consensus 6 lii~~S~~-g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~ 44 (203)
+.||++++ +.+++.-+.+ +. .|++++.+|+.+..
T Consensus 4 itiY~~p~C~~crkak~~L-~~----~gi~~~~idi~~~~ 38 (141)
T 1s3c_A 4 ITIYHNPASGTSRNTLEMI-RN----SGTEPTIILYLENP 38 (141)
T ss_dssp CEEECCTTCHHHHHHHHHH-HH----TTCCCEEECTTTSC
T ss_pred EEEEECCCChHHHHHHHHH-HH----cCCCEEEEECCCCC
Confidence 34677765 4555444443 32 58899999997653
No 368
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=25.74 E-value=74 Score=25.01 Aligned_cols=40 Identities=23% Similarity=0.265 Sum_probs=27.9
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
|..++...++...|-++..+..+++.+.+ .|.+|.++...
T Consensus 14 ~~~~~~~~~~p~~GG~~~~~~~la~~L~~-~G~~V~v~~~~ 53 (394)
T 2jjm_A 14 MKLKIGITCYPSVGGSGVVGTELGKQLAE-RGHEIHFITSG 53 (394)
T ss_dssp -CCEEEEECCC--CHHHHHHHHHHHHHHH-TTCEEEEECSS
T ss_pred heeeeehhcCCCCCCHHHHHHHHHHHHHh-CCCEEEEEeCC
Confidence 33466666665567777888888888888 79999988664
No 369
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=25.73 E-value=1.3e+02 Score=20.08 Aligned_cols=47 Identities=9% Similarity=-0.035 Sum_probs=28.1
Q ss_pred hhhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEe
Q 028841 65 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYS 115 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t 115 (203)
...+..+|++|+....-...-...++.|+..+... ...+.++.++++
T Consensus 81 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~n 127 (179)
T 2y8e_A 81 PSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTE----RGSDVIIMLVGN 127 (179)
T ss_dssp HHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHH----HTTSSEEEEEEE
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEE
Confidence 45678999999987665433333455666555321 124677777665
No 370
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=25.59 E-value=79 Score=22.56 Aligned_cols=33 Identities=15% Similarity=0.036 Sum_probs=20.0
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEE
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAK 36 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~ 36 (203)
|.++|.||.+|..- ..+++.+.+.+++ .|+.++
T Consensus 4 m~p~V~IimgS~SD--~~v~~~a~~~l~~-~gi~~e 36 (166)
T 3oow_A 4 MSVQVGVIMGSKSD--WSTMKECCDILDN-LGIGYE 36 (166)
T ss_dssp -CEEEEEEESSGGG--HHHHHHHHHHHHH-TTCEEE
T ss_pred CCCeEEEEECcHHh--HHHHHHHHHHHHH-cCCCEE
Confidence 44689999999643 2345555555555 566544
No 371
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=25.51 E-value=2e+02 Score=21.15 Aligned_cols=38 Identities=16% Similarity=0.064 Sum_probs=28.1
Q ss_pred eEEEEEcCC-cchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 4 KVYIVYYSM-YGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilii~~S~-~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
+|.++..+. +.....+.+.+.+.+.+ .|+++.+.+...
T Consensus 10 ~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~ 48 (293)
T 3l6u_A 10 IVGFTIVNDKHEFAQRLINAFKAEAKA-NKYEALVATSQN 48 (293)
T ss_dssp EEEEEESCSCSHHHHHHHHHHHHHHHH-TTCEEEEEECSS
T ss_pred EEEEEEecCCcHHHHHHHHHHHHHHHH-cCCEEEEECCCC
Confidence 566666553 44677888999999988 799988887643
No 372
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=25.24 E-value=29 Score=26.74 Aligned_cols=30 Identities=10% Similarity=-0.039 Sum_probs=18.8
Q ss_pred hhhhhhcCeeEEeccccCCccHHHHHHHHHHhc
Q 028841 65 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~ 97 (203)
.+.+..+|.||..++.... ...+++++.+.
T Consensus 74 ~~a~~~~d~vi~~a~~~~~---~~~~~l~~aa~ 103 (318)
T 2r6j_A 74 VELMKKVDVVISALAFPQI---LDQFKILEAIK 103 (318)
T ss_dssp HHHHTTCSEEEECCCGGGS---TTHHHHHHHHH
T ss_pred HHHHcCCCEEEECCchhhh---HHHHHHHHHHH
Confidence 3456678999988775431 12466777653
No 373
>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway, aromatic amino acid biosynthesis, lyase, sulphonamide; HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A* 2xda_A* 1j2y_A* 2wks_A* 2xb9_A* 2c4v_A* 2xd9_A*
Probab=25.07 E-value=1.1e+02 Score=21.93 Aligned_cols=81 Identities=14% Similarity=0.208 Sum_probs=46.9
Q ss_pred CCceEEEEEcCC-----------cch--HHHHHHHHHHhcc--cCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCCh
Q 028841 1 MATKVYIVYYSM-----------YGH--VEKLAEEIKKGAS--SVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITP 65 (203)
Q Consensus 1 Mm~kilii~~S~-----------~g~--T~~la~~i~~~~~--~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~ 65 (203)
|| ||+|+++.. +|+ -+.+-+.+.+... + .|++++.+.-... .+.++. ..
T Consensus 9 ~M-~IlvlNGPNLNlLG~REP~iYG~~Tl~di~~~l~~~a~~~~-~g~~l~~~QSN~E--GeLId~------------Ih 72 (176)
T 2c4w_A 9 HM-KILVIQGPNLNMLGHRDPRLYGMVTLDQIHEIMQTFVKQGN-LDVELEFFQTNFE--GEIIDK------------IQ 72 (176)
T ss_dssp CE-EEEEEECTTGGGBTTTBCGGGTSCCHHHHHHHHHHHHHHTT-CCEEEEEEECSCH--HHHHHH------------HH
T ss_pred cc-EEEEEcCCCccccCCCCCCcCCcCCHHHHHHHHHHHhcccc-CCCEEEEEeeCcH--HHHHHH------------HH
Confidence 56 899999972 453 3556667777666 6 6777777654321 122210 12
Q ss_pred hhhhh-cCeeEEeccccCCccHHHHHHHHHHhcc
Q 028841 66 NELAE-ADGFVFGFPTRFGMMAAQFKAFLDATGG 98 (203)
Q Consensus 66 ~~l~~-aD~iiigsP~y~~~~~~~~k~~ld~~~~ 98 (203)
+...+ +|+|||=.--|-.. |-.+++.|..+..
T Consensus 73 ~a~~~~~dgIIINpgAyTHt-SvAlrDAl~~v~~ 105 (176)
T 2c4w_A 73 ESVGSEYEGIIINPGAFSHT-SIAIADAIMLAGK 105 (176)
T ss_dssp HHHSSSCCEEEEECGGGGGT-CHHHHHHHHTSSS
T ss_pred HhccCCeeEEEECcchhccc-hHHHHHHHHhCCC
Confidence 23345 88888876666532 2346666666543
No 374
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=25.05 E-value=1.6e+02 Score=19.75 Aligned_cols=47 Identities=6% Similarity=0.022 Sum_probs=28.9
Q ss_pred hhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 66 NELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..+..+|++|+..-.-...-...++.|++.+... ...++++.++++-
T Consensus 79 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK 125 (180)
T 2g6b_A 79 AYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEY----AQHDVALMLLGNK 125 (180)
T ss_dssp CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEEC
T ss_pred HHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHh----CCCCCcEEEEEEC
Confidence 4578899999976655443334456666665421 1256777777763
No 375
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=24.97 E-value=1.6e+02 Score=19.76 Aligned_cols=48 Identities=8% Similarity=-0.027 Sum_probs=29.2
Q ss_pred hhhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 65 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+..+|++|+..-.-...-...++.|+..+... ...+.++.++++-
T Consensus 79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~p~i~v~nK 126 (181)
T 2efe_B 79 PMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQ----GNPNMVMALAGNK 126 (181)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH----SCTTCEEEEEEEC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEEC
Confidence 44678899999986654433334556666665421 2346777777663
No 376
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=24.61 E-value=39 Score=26.83 Aligned_cols=36 Identities=17% Similarity=0.159 Sum_probs=23.9
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
||+++.....|+... +..+++.+.+ .|.+|.++...
T Consensus 22 rIl~~~~~~~Gh~~~-~~~la~~L~~-~GheV~v~~~~ 57 (412)
T 3otg_A 22 RVLFASLGTHGHTYP-LLPLATAARA-AGHEVTFATGE 57 (412)
T ss_dssp EEEEECCSSHHHHGG-GHHHHHHHHH-TTCEEEEEECG
T ss_pred EEEEEcCCCcccHHH-HHHHHHHHHH-CCCEEEEEccH
Confidence 898887665666543 3345566666 58898888654
No 377
>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Probab=24.53 E-value=34 Score=25.55 Aligned_cols=18 Identities=17% Similarity=-0.082 Sum_probs=14.5
Q ss_pred hhhhhhcCeeEEeccccC
Q 028841 65 PNELAEADGFVFGFPTRF 82 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~ 82 (203)
.+.+.++|.||+..|...
T Consensus 85 ~e~~~~aDvVilavp~~~ 102 (245)
T 3dtt_A 85 ADVAAGAELVVNATEGAS 102 (245)
T ss_dssp HHHHHHCSEEEECSCGGG
T ss_pred HHHHhcCCEEEEccCcHH
Confidence 345789999999999763
No 378
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=24.45 E-value=1.2e+02 Score=21.86 Aligned_cols=39 Identities=8% Similarity=0.101 Sum_probs=24.6
Q ss_pred CCceEEEEEcCC--cchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 1 MATKVYIVYYSM--YGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 1 Mm~kilii~~S~--~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
|| |++.|.+.. .|.|- ++-.++..+.+ .|..|-++|+..
T Consensus 1 M~-~~i~v~s~kgGvGKTt-~a~~LA~~la~-~g~~VlliD~D~ 41 (237)
T 1g3q_A 1 MG-RIISIVSGKGGTGKTT-VTANLSVALGD-RGRKVLAVDGDL 41 (237)
T ss_dssp CC-EEEEEECSSTTSSHHH-HHHHHHHHHHH-TTCCEEEEECCT
T ss_pred Cc-eEEEEecCCCCCCHHH-HHHHHHHHHHh-cCCeEEEEeCCC
Confidence 55 666655554 35553 45555566655 577899999864
No 379
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=24.44 E-value=39 Score=27.17 Aligned_cols=38 Identities=16% Similarity=0.200 Sum_probs=23.4
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
+||+++.....|+.. -+..+++.+.+ .|++|.++....
T Consensus 8 ~kIl~~~~~~~Gh~~-p~~~la~~L~~-~G~~V~~~~~~~ 45 (430)
T 2iyf_A 8 AHIAMFSIAAHGHVN-PSLEVIRELVA-RGHRVTYAIPPV 45 (430)
T ss_dssp CEEEEECCSCHHHHG-GGHHHHHHHHH-TTCEEEEEECGG
T ss_pred ceEEEEeCCCCcccc-chHHHHHHHHH-CCCeEEEEeCHH
Confidence 488886544456643 23445555655 588888876543
No 380
>2l17_A Synarsc, arsenate reductase; alpha/beta sandwich, oxidoreductase; NMR {Synechocystis} PDB: 2l18_A 2l19_A
Probab=24.40 E-value=87 Score=21.06 Aligned_cols=27 Identities=22% Similarity=0.150 Sum_probs=18.2
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhccc
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASS 29 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~ 29 (203)
|+|||+|...+.. -..||+.+.+.+..
T Consensus 4 m~~VLFVC~gN~c-RSpmAEa~~~~~~~ 30 (134)
T 2l17_A 4 MKKVMFVCKRNSC-RSQMAEGFAKTLGA 30 (134)
T ss_dssp CEEEEEECCSSTH-HHHHHHHHHHHHSB
T ss_pred CCEEEEEeCCchH-HHHHHHHHHHHHcC
Confidence 5588887655443 34689988887754
No 381
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=24.34 E-value=28 Score=28.67 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
||+||||+.. | .++..+.+.+++ .|+++..++..
T Consensus 5 ~~k~ILI~g~---g---~~~~~i~~a~~~-~G~~vv~v~~~ 38 (461)
T 2dzd_A 5 RIRKVLVANR---G---EIAIRVFRACTE-LGIRTVAIYSK 38 (461)
T ss_dssp CCSEEEECSC---H---HHHHHHHHHHHH-HTCEEEEEECG
T ss_pred cCcEEEEECC---c---HHHHHHHHHHHH-cCCEEEEEECC
Confidence 5678888632 2 134555566666 58888888754
No 382
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A
Probab=24.32 E-value=1.6e+02 Score=23.44 Aligned_cols=57 Identities=14% Similarity=0.072 Sum_probs=32.2
Q ss_pred HHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecccc
Q 028841 19 LAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR 81 (203)
Q Consensus 19 la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y 81 (203)
|...+++.+.. .|.+|..+|........... ......+ ...+.+.++|.|++..|.-
T Consensus 175 IG~~vA~~l~~-~G~~V~~~dr~~~~~~~~~~-~g~~~~~----~l~ell~~aDvV~l~~Plt 231 (351)
T 3jtm_A 175 IGKLLLQRLKP-FGCNLLYHDRLQMAPELEKE-TGAKFVE----DLNEMLPKCDVIVINMPLT 231 (351)
T ss_dssp HHHHHHHHHGG-GCCEEEEECSSCCCHHHHHH-HCCEECS----CHHHHGGGCSEEEECSCCC
T ss_pred HHHHHHHHHHH-CCCEEEEeCCCccCHHHHHh-CCCeEcC----CHHHHHhcCCEEEECCCCC
Confidence 55566666666 68888888755432221111 0000001 1245678999999999964
No 383
>1nbw_B Glycerol dehydratase reactivase beta subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.51.3.2
Probab=24.26 E-value=87 Score=20.91 Aligned_cols=36 Identities=22% Similarity=0.329 Sum_probs=24.8
Q ss_pred EEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 5 VYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 5 ilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
|.| |.+.......+.+.|..++++ +|+..++.....
T Consensus 8 I~i-~~~~~~~~~~~l~~vl~GIEE-EGip~~v~~~~~ 43 (117)
T 1nbw_B 8 VRL-FYDPRGHHAGAINELCWGLEE-QGVPCQTITYDG 43 (117)
T ss_dssp EEE-EECTTSCCHHHHHHHHHHHHH-TTCCEEEEECTT
T ss_pred EEE-EeCCCCCCHHHHHHHHhhhhh-cCCCeEEEEeCC
Confidence 444 443333334577999999999 899988876553
No 384
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=24.20 E-value=1.3e+02 Score=19.14 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=22.8
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEE
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQ 39 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~ 39 (203)
+|+|+.+|....| .+.+.+.+++ .|+.+..+.
T Consensus 2 nivivvfstdeet---lrkfkdiikk-ngfkvrtvr 33 (134)
T 2l69_A 2 NIVIVVFSTDEET---LRKFKDIIKK-NGFKVRTVR 33 (134)
T ss_dssp CEEEEECCCCHHH---HHHHHHHHHH-TTCEEEEEC
T ss_pred cEEEEEEeCCHHH---HHHHHHHHHh-cCceEEEec
Confidence 7899999976444 4556666666 788887664
No 385
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=24.19 E-value=88 Score=21.10 Aligned_cols=47 Identities=6% Similarity=0.002 Sum_probs=31.0
Q ss_pred hhhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 65 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+..+|++|+....-...-...++.|+..+.. ...+.++.++++-
T Consensus 76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~-----~~~~~p~ilv~nK 122 (181)
T 3tw8_B 76 STYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQ-----NCDDVCRILVGNK 122 (181)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHH-----HCTTSEEEEEEEC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH-----hCCCCCEEEEEEC
Confidence 4567889999998776654444556667766642 2456777777663
No 386
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=24.16 E-value=1.1e+02 Score=23.83 Aligned_cols=66 Identities=17% Similarity=0.206 Sum_probs=37.5
Q ss_pred chHHHHHHHHHHhcccCCCceEEEEEcCCCCc--HHHhccCCCCCCCCCCCCChhhhhhcCeeEEecccc-CCccHHHHH
Q 028841 14 GHVEKLAEEIKKGASSVEGVEAKLWQVPETLP--EEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR-FGMMAAQFK 90 (203)
Q Consensus 14 g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~--~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y-~~~~~~~~k 90 (203)
|.+-..+...++.+++ .|++++++++....| .+.+ .+.+..++.+|+.=--+ .+++-..+.
T Consensus 211 G~~~~~a~~Aa~~L~~-~Gi~v~vi~~~~l~P~d~~~i---------------~~~~~~~~~vv~vEe~~~~gG~g~~v~ 274 (324)
T 1umd_B 211 GTVMPEVLQAAAELAK-AGVSAEVLDLRTLMPWDYEAV---------------MNSVAKTGRVVLVSDAPRHASFVSEVA 274 (324)
T ss_dssp GGGHHHHHHHHHHHHH-TTCCEEEEECCEEETCCHHHH---------------HHHHHHHSCEEEEEEEESTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHHh-cCCCEEEEEeceecCCCHHHH---------------HHHHhcCCeEEEEecCCcCCCHHHHHH
Confidence 3344455555666666 688999999876533 1111 23455666665553222 466666666
Q ss_pred HHHHH
Q 028841 91 AFLDA 95 (203)
Q Consensus 91 ~~ld~ 95 (203)
.++..
T Consensus 275 ~~l~~ 279 (324)
T 1umd_B 275 ATIAE 279 (324)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 387
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Probab=24.09 E-value=2e+02 Score=20.48 Aligned_cols=39 Identities=21% Similarity=0.209 Sum_probs=28.5
Q ss_pred eEEEEEcCCcc-hHHHHHHHHHHhcccCCCc---eEEEEEcCCC
Q 028841 4 KVYIVYYSMYG-HVEKLAEEIKKGASSVEGV---EAKLWQVPET 43 (203)
Q Consensus 4 kilii~~S~~g-~T~~la~~i~~~~~~~~g~---~v~~~~l~~~ 43 (203)
|++||.+.-+. -|..|.+-..+.+.+ .|+ +++++.++-.
T Consensus 18 ri~IV~arfn~~I~~~Ll~gA~~~L~~-~Gv~~~~i~v~~VPGa 60 (168)
T 1ejb_A 18 RVGIIHARWNRVIIDALVKGAIERMAS-LGVEENNIIIETVPGS 60 (168)
T ss_dssp CEEEEECCTTHHHHHHHHHHHHHHHHH-TTCCGGGEEEEECSSG
T ss_pred EEEEEEEeCcHHHHHHHHHHHHHHHHH-cCCCccceEEEECCcH
Confidence 78888777554 588888888888887 564 4677777553
No 388
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=24.08 E-value=2.7e+02 Score=21.99 Aligned_cols=35 Identities=23% Similarity=0.300 Sum_probs=25.4
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEE
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQ 39 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~ 39 (203)
+|+.|||.. +...+.+++.+.+.+++ .|.++....
T Consensus 165 ~~vail~~~-~~~g~~~~~~~~~~~~~-~g~~vv~~~ 199 (419)
T 3h5l_A 165 NKIAIITGP-GIYSVNIANAIRDGAGE-YGYDVSLFE 199 (419)
T ss_dssp SEEEEEECS-SHHHHHHHHHHHHHGGG-GTCEEEEEE
T ss_pred CEEEEEEcC-cchhHHHHHHHHHHHHH-cCCeEEEEe
Confidence 578887754 55567789999999988 687765443
No 389
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.98 E-value=1.5e+02 Score=18.95 Aligned_cols=38 Identities=11% Similarity=0.088 Sum_probs=19.8
Q ss_pred eEEEEEcCCcchHHH--HHHHHHHhcccCCCceEEEEEcCC
Q 028841 4 KVYIVYYSMYGHVEK--LAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilii~~S~~g~T~~--la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
+|.|+..|..+..+. -.+.+.+.|.+ .|++++.+|+..
T Consensus 9 ~V~vy~~~~C~~C~~~~~~~~ak~~L~~-~gi~y~~vdI~~ 48 (111)
T 2ct6_A 9 VIRVFIASSSGFVAIKKKQQDVVRFLEA-NKIEFEEVDITM 48 (111)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHHH-TTCCEEEEETTT
T ss_pred EEEEEEcCCCCCcccchhHHHHHHHHHH-cCCCEEEEECCC
Confidence 555443344455551 11222333333 477899999865
No 390
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=23.95 E-value=38 Score=27.53 Aligned_cols=39 Identities=13% Similarity=0.111 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
|| ||+++.+...|+..- +-.+++.|.+ .|.+|.++--.+
T Consensus 20 ~m-rIl~~~~~~~GHv~p-~l~la~~L~~-~GheV~~~~~~~ 58 (441)
T 2yjn_A 20 HM-RVVFSSMASKSHLFG-LVPLAWAFRA-AGHEVRVVASPA 58 (441)
T ss_dssp CC-EEEEECCSCHHHHTT-THHHHHHHHH-TTCEEEEEECGG
T ss_pred cc-EEEEEcCCCcchHhH-HHHHHHHHHH-CCCeEEEEeCch
Confidence 45 888884444566443 3344555655 588998886543
No 391
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=23.85 E-value=1.2e+02 Score=23.65 Aligned_cols=29 Identities=10% Similarity=-0.010 Sum_probs=22.8
Q ss_pred hhcCeeEEeccccCCccHHHHHHHHHHhc
Q 028841 69 AEADGFVFGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 69 ~~aD~iiigsP~y~~~~~~~~k~~ld~~~ 97 (203)
..+|++++.+|-|+.--...+..++..+.
T Consensus 106 ~Gadavlv~~P~y~~~s~~~l~~~f~~va 134 (306)
T 1o5k_A 106 LGANGVLVVTPYYNKPTQEGLYQHYKYIS 134 (306)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHH
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHH
Confidence 47899999999998766667777777764
No 392
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=23.84 E-value=2.1e+02 Score=22.64 Aligned_cols=59 Identities=12% Similarity=0.088 Sum_probs=30.3
Q ss_pred eccccCCc--cHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEe
Q 028841 77 GFPTRFGM--MAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFV 142 (203)
Q Consensus 77 gsP~y~~~--~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v 142 (203)
..|++|+. -.-+.+.++|-+.-.-..+.++|+++++++-. . . ....+...+...|+.+.
T Consensus 123 ~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~l~gl~va~vGD~-----~-~-va~Sl~~~~~~~G~~v~ 183 (321)
T 1oth_A 123 SIPIINGLSDLYHPIQILADYLTLQEHYSSLKGLTLSWIGDG-----N-N-ILHSIMMSAAKFGMHLQ 183 (321)
T ss_dssp SSCEEESCCSSCCHHHHHHHHHHHHHHHSCCTTCEEEEESCS-----S-H-HHHHHHTTTGGGTCEEE
T ss_pred CCCEEcCCCCCCCcHHHHHHHHHHHHHhCCcCCcEEEEECCc-----h-h-hHHHHHHHHHHcCCeEE
Confidence 35666632 12244556665431111246889998875442 1 1 23445555566677664
No 393
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=23.84 E-value=2.6e+02 Score=22.88 Aligned_cols=72 Identities=14% Similarity=0.105 Sum_probs=36.5
Q ss_pred CCceEEEEEcCCcc-----hHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeE
Q 028841 1 MATKVYIVYYSMYG-----HVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFV 75 (203)
Q Consensus 1 Mm~kilii~~S~~g-----~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ii 75 (203)
|+.||.+|-+---| .+.++.+++.+.. |+++++....-- ...+.... ..+|+...+.++++|+++
T Consensus 22 M~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~----g~~~~~~~~~~G--~~~~~~~G----~~lp~~tl~~~~~~daiL 91 (390)
T 3u1h_A 22 MKKKIAVLPGDGIGPEVMEAAIEVLKAVAERF----GHEFEFEYGLIG--GAAIDEAG----TPLPEETLDVCRGSDAIL 91 (390)
T ss_dssp --CEEEEEEESTTHHHHHHHHHHHHHHHHHHH----SCCCEEEECCCT--HHHHHSSS----SSSCHHHHHHHHTSSEEE
T ss_pred ccceEEEECCCccCHHHHHHHHHHHHHHHHhc----CCCeEEEEEEcC--HHHHHhhC----CcCCHHHHHHHHHCCEEE
Confidence 54688888887544 2444555544432 344444433110 01111100 122333467899999999
Q ss_pred Ee---ccccC
Q 028841 76 FG---FPTRF 82 (203)
Q Consensus 76 ig---sP~y~ 82 (203)
+| +|.|.
T Consensus 92 ~Gavg~P~~~ 101 (390)
T 3u1h_A 92 LGAVGGPKWD 101 (390)
T ss_dssp EEECCCSTTT
T ss_pred ECCcCCCCcC
Confidence 86 67763
No 394
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}
Probab=23.72 E-value=22 Score=26.79 Aligned_cols=15 Identities=7% Similarity=0.027 Sum_probs=12.8
Q ss_pred hhhhcCeeEEecccc
Q 028841 67 ELAEADGFVFGFPTR 81 (203)
Q Consensus 67 ~l~~aD~iiigsP~y 81 (203)
.+.++|.||+.+|..
T Consensus 65 ~~~~~Dvvi~av~~~ 79 (266)
T 3d1l_A 65 VNPYAKLYIVSLKDS 79 (266)
T ss_dssp SCSCCSEEEECCCHH
T ss_pred HhcCCCEEEEecCHH
Confidence 356899999999987
No 395
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=23.56 E-value=92 Score=24.29 Aligned_cols=14 Identities=7% Similarity=-0.016 Sum_probs=11.6
Q ss_pred hhhhhhcCeeEEec
Q 028841 65 PNELAEADGFVFGF 78 (203)
Q Consensus 65 ~~~l~~aD~iiigs 78 (203)
.+.+.++|+|+|+-
T Consensus 105 ~~~l~~ad~I~v~G 118 (291)
T 3en0_A 105 RLFVEQCTGIFMTG 118 (291)
T ss_dssp HHHHHHCSEEEECC
T ss_pred HHHHhcCCEEEECC
Confidence 45799999999974
No 396
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1
Probab=23.56 E-value=91 Score=22.06 Aligned_cols=31 Identities=10% Similarity=-0.056 Sum_probs=19.6
Q ss_pred CceEEEEEcCCcc---hHHHHHHHHHHhcccCCCc
Q 028841 2 ATKVYIVYYSMYG---HVEKLAEEIKKGASSVEGV 33 (203)
Q Consensus 2 m~kilii~~S~~g---~T~~la~~i~~~~~~~~g~ 33 (203)
|++|.|+-+|..+ .-...|+.+.+.+.+ .|+
T Consensus 1 m~~V~V~gs~~~~~~~~~~~~A~~lg~~La~-~g~ 34 (171)
T 1weh_A 1 MRLLAVFVSSRLSPEDPLYARWVRYGEVLAE-EGF 34 (171)
T ss_dssp CEEEEEECCSSCCTTSHHHHHHHHHHHHHHH-TTE
T ss_pred CCEEEEEeCCCCCCCcHHHHHHHHHHHHHHH-CCC
Confidence 4456665555544 356788888888877 553
No 397
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=23.47 E-value=1.2e+02 Score=23.33 Aligned_cols=40 Identities=10% Similarity=0.011 Sum_probs=28.6
Q ss_pred hhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEE
Q 028841 69 AEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFY 114 (203)
Q Consensus 69 ~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~ 114 (203)
..+|++.+.+|-|+.--...+..++..+.. -.+.|+.++-
T Consensus 95 ~Gadavlv~~P~y~~~s~~~l~~~f~~ia~------a~~lPiilYn 134 (292)
T 2ojp_A 95 SGIVGCLTVTPYYNRPSQEGLYQHFKAIAE------HTDLPQILYN 134 (292)
T ss_dssp SSCSEEEEECCCSSCCCHHHHHHHHHHHHT------TCSSCEEEEC
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHH------hcCCCEEEEe
Confidence 368999999999987666777777777642 2356666665
No 398
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=23.32 E-value=73 Score=23.67 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=19.9
Q ss_pred CceEEEEEcCCcch---HHHHHHHHHHhcccCCCce
Q 028841 2 ATKVYIVYYSMYGH---VEKLAEEIKKGASSVEGVE 34 (203)
Q Consensus 2 m~kilii~~S~~g~---T~~la~~i~~~~~~~~g~~ 34 (203)
|++|.|+.+|..++ -...|+.+.+.+.+ .|+.
T Consensus 9 m~~V~V~ggsr~~~~~~~~~~A~~lg~~LA~-~g~~ 43 (216)
T 1ydh_A 9 FRKICVFCGSHSGHREVFSDAAIELGNELVK-RKID 43 (216)
T ss_dssp CSEEEEECCSCCCSSHHHHHHHHHHHHHHHH-TTCE
T ss_pred CCeEEEEeCCCCCCCcHHHHHHHHHHHHHHH-CCCE
Confidence 44677766776543 34577777777766 4543
No 399
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=23.24 E-value=1.6e+02 Score=19.29 Aligned_cols=47 Identities=11% Similarity=0.073 Sum_probs=29.5
Q ss_pred hhhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 65 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+..+|++|+....-...-...++.|+..+... ..+.++.++.+-
T Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-----~~~~piilv~nK 118 (168)
T 1z2a_A 72 KAYYRGAQACVLVFSTTDRESFEAISSWREKVVAE-----VGDIPTALVQNK 118 (168)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH-----HCSCCEEEEEEC
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-----CCCCCEEEEEEC
Confidence 45678999999987765543334455566655321 256777777663
No 400
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=23.15 E-value=1.8e+02 Score=22.99 Aligned_cols=66 Identities=17% Similarity=0.043 Sum_probs=38.7
Q ss_pred chHHHHHHHHHHhcccCCCceEEEEEcCCCCc--HHHhccCCCCCCCCCCCCChhhhhhcCeeEEecccc-CCccHHHHH
Q 028841 14 GHVEKLAEEIKKGASSVEGVEAKLWQVPETLP--EEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR-FGMMAAQFK 90 (203)
Q Consensus 14 g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~--~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~y-~~~~~~~~k 90 (203)
|.+-..+...++.+++ .|.++.++++....| .+.+ .+.+..++.||+.=--+ .|.+-..+.
T Consensus 225 Gs~~~~a~~Aa~~L~~-~Gi~v~vv~~~~l~P~d~~~i---------------~~~~~~~~~vv~vEe~~~~Gg~g~~v~ 288 (341)
T 2ozl_B 225 SRPVGHCLEAAAVLSK-EGVECEVINMRTIRPMDMETI---------------EASVMKTNHLVTVEGGWPQFGVGAEIC 288 (341)
T ss_dssp STHHHHHHHHHHHHHT-TTCCEEEEECCEEETCCHHHH---------------HHHHHHHSCEEEECSSCSTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHh-cCCCeEEEeeeeecCCCHHHH---------------HHHHhcCCeEEEEecCcccCcHHHHHH
Confidence 4455566666777776 688999999876533 1111 23455666555442222 466666666
Q ss_pred HHHHH
Q 028841 91 AFLDA 95 (203)
Q Consensus 91 ~~ld~ 95 (203)
.++..
T Consensus 289 ~~l~~ 293 (341)
T 2ozl_B 289 ARIME 293 (341)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66654
No 401
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=23.13 E-value=1.7e+02 Score=21.88 Aligned_cols=39 Identities=21% Similarity=0.204 Sum_probs=20.7
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
++|++.+.. +..+...++.+.+.+.. .+.++.++.+.+.
T Consensus 171 ~~Ilv~~d~-s~~s~~al~~a~~la~~-~~~~l~ll~v~~~ 209 (294)
T 3loq_A 171 DRVLVAYDF-SKWADRALEYAKFVVKK-TGGELHIIHVSED 209 (294)
T ss_dssp SEEEEECCS-SHHHHHHHHHHHHHHHH-HTCEEEEEEECSS
T ss_pred CEEEEEECC-CHHHHHHHHHHHHHhhh-cCCEEEEEEEccC
Confidence 456555432 12344555555554444 4557777777654
No 402
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=23.01 E-value=1.4e+02 Score=23.76 Aligned_cols=39 Identities=13% Similarity=0.044 Sum_probs=29.7
Q ss_pred ceEEEEEcCC---cchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 3 TKVYIVYYSM---YGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 3 ~kilii~~S~---~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
+||.|++|.. +--+-.=|..+.+.+.+ .+.++..+++..
T Consensus 11 ~~v~vl~GG~S~E~~vS~~sa~~v~~~l~~-~~~~v~~i~i~~ 52 (373)
T 3lwb_A 11 VRVAVVFGGRSNEHAISCVSAGSILRNLDS-RRFDVIAVGITP 52 (373)
T ss_dssp EEEEEEEEC-----CHHHHHHHHHHHHSCT-TTEEEEEEEECT
T ss_pred cEEEEEecCCCCChhhHHHHHHHHHHHhhh-cCceEEEEEecC
Confidence 4799999854 34566778888898887 788999999864
No 403
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0
Probab=23.00 E-value=75 Score=23.58 Aligned_cols=34 Identities=9% Similarity=0.158 Sum_probs=19.6
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
|..+|.|...|--..+++.+ .+ .|..+.+.+-.+
T Consensus 8 k~vlVTGas~gIG~~~a~~l----~~-~G~~v~~~~~~~ 41 (264)
T 3i4f_A 8 RHALITAGTKGLGKQVTEKL----LA-KGYSVTVTYHSD 41 (264)
T ss_dssp CEEEETTTTSHHHHHHHHHH----HH-TTCEEEEEESSC
T ss_pred CEEEEeCCCchhHHHHHHHH----HH-CCCEEEEEcCCC
Confidence 55666665555444455544 44 577887775543
No 404
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1
Probab=22.94 E-value=1.2e+02 Score=17.51 Aligned_cols=34 Identities=9% Similarity=0.150 Sum_probs=21.0
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
++.+++.+..+..+++...+.+ .|++++.+|+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~-----~~i~~~~vdi~~ 35 (81)
T 1h75_A 2 RITIYTRNDCVQCHATKRAMEN-----RGFDFEMINVDR 35 (81)
T ss_dssp CEEEEECTTCHHHHHHHHHHHH-----TTCCCEEEETTT
T ss_pred EEEEEcCCCChhHHHHHHHHHH-----CCCCeEEEECCC
Confidence 4555444456777776655543 356788888764
No 405
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=22.56 E-value=1.2e+02 Score=22.35 Aligned_cols=39 Identities=10% Similarity=0.145 Sum_probs=23.6
Q ss_pred CCceEEEEEcCC--cchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 1 MATKVYIVYYSM--YGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 1 Mm~kilii~~S~--~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
|| |++.|.+.. .|.|- ++-.++..+.+ .|..|-++|+..
T Consensus 1 M~-~~I~v~s~kgGvGKTt-~a~~LA~~la~-~g~~VlliD~D~ 41 (263)
T 1hyq_A 1 MV-RTITVASGKGGTGKTT-ITANLGVALAQ-LGHDVTIVDADI 41 (263)
T ss_dssp -C-EEEEEEESSSCSCHHH-HHHHHHHHHHH-TTCCEEEEECCC
T ss_pred CC-eEEEEECCCCCCCHHH-HHHHHHHHHHh-CCCcEEEEECCC
Confidence 55 555555443 35553 45555566655 577899999865
No 406
>1cfz_A Hydrogenase 2 maturation protease; metzincins, nickel; 2.20A {Escherichia coli} SCOP: c.56.1.1 PDB: 2kml_A
Probab=22.53 E-value=2e+02 Score=19.97 Aligned_cols=68 Identities=6% Similarity=0.003 Sum_probs=45.0
Q ss_pred eEEEE-EcCC----cchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEec
Q 028841 4 KVYIV-YYSM----YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGF 78 (203)
Q Consensus 4 kilii-~~S~----~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigs 78 (203)
|++|+ +|.. .|.--.+++.+.+...- ...++++|.....+. ....+..+|.+||.=
T Consensus 2 ~ilVlGiGN~l~gDDG~G~~v~~~L~~~~~~--p~~v~vid~gt~~~~-----------------l~~~l~~~d~lIiVD 62 (162)
T 1cfz_A 2 RILVLGVGNILLTDEAIGVRIVEALEQRYIL--PDYVEILDGGTAGME-----------------LLGDMANRDHLIIAD 62 (162)
T ss_dssp CEEEEEESCTTBGGGGHHHHHHHHHHHHEEC--CTTEEEEEEETCCGG-----------------GHHHHSSCSEEEEEE
T ss_pred CEEEEEECCcccccccHHHHHHHHHHhhCCC--CCCeEEEECCCCHHH-----------------HHHHHhCCCEEEEEE
Confidence 67777 4543 46777888888775321 125788887664322 145788899999887
Q ss_pred cc-cCCccHHHHH
Q 028841 79 PT-RFGMMAAQFK 90 (203)
Q Consensus 79 P~-y~~~~~~~~k 90 (203)
-+ ..+..|+.++
T Consensus 63 A~~~~g~~PGti~ 75 (162)
T 1cfz_A 63 AIVSKKNAPGTMM 75 (162)
T ss_dssp ECCSSCSCTTCEE
T ss_pred ehhhcCCCCCEEE
Confidence 77 7777776543
No 407
>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}
Probab=22.50 E-value=1.4e+02 Score=19.43 Aligned_cols=32 Identities=9% Similarity=0.152 Sum_probs=20.3
Q ss_pred EEEEcCCc-chHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 6 YIVYYSMY-GHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 6 lii~~S~~-g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
++||++++ +.++++-+.+.+ .|++++.+|+.+
T Consensus 7 i~iY~~~~C~~C~ka~~~L~~-----~gi~y~~~di~~ 39 (120)
T 2kok_A 7 VTIYGIKNCDTMKKARIWLED-----HGIDYTFHDYKK 39 (120)
T ss_dssp EEEEECSSCHHHHHHHHHHHH-----HTCCEEEEEHHH
T ss_pred EEEEECCCChHHHHHHHHHHH-----cCCcEEEEeeeC
Confidence 45677765 556554444433 477899999864
No 408
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=22.49 E-value=63 Score=25.11 Aligned_cols=36 Identities=25% Similarity=0.190 Sum_probs=26.8
Q ss_pred EEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 6 YIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 6 lii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
+|+-+++.|.+..+++.+++.+.+..|..+.+.+-.
T Consensus 12 ~ivp~~~GG~~D~~aR~la~~l~~~lg~~vvV~n~~ 47 (301)
T 2qpq_A 12 IIVTFPPGGGTDMLARLIGNYLTESLGQTAVVENRP 47 (301)
T ss_dssp EEESSCTTSHHHHHHHHHHHHHHHGGGSCEEEEECC
T ss_pred EEEccCCCcHHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 345567889999999999888876456677777653
No 409
>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}
Probab=22.40 E-value=27 Score=29.16 Aligned_cols=55 Identities=9% Similarity=0.067 Sum_probs=28.3
Q ss_pred HHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecc
Q 028841 20 AEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFP 79 (203)
Q Consensus 20 a~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP 79 (203)
+-.|.+.|.+ .|++|.++|..-. +.......... .+.+...+.+..||+||+.|+
T Consensus 355 a~~ii~~L~~-~Ga~V~~~DP~~~--~~~~~~~~~~~--~~~~~~~~a~~~aDavvi~t~ 409 (444)
T 3vtf_A 355 GVEVARLLLE-RGARVYVHDPMAM--EKARAVLGDSV--TYVEDPQALLDQVEGVIIATA 409 (444)
T ss_dssp HHHHHHHHHH-TTCEEEEECSSTH--HHHHHHHGGGS--EECSCHHHHHHHCSEEEECSC
T ss_pred HHHHHHHHHH-CCCEEEEECCCCC--hHHHHhcCCCc--eecCCHHHHHhCCCEEEEccC
Confidence 3345555556 6889998886421 11100000000 000111456889999999986
No 410
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=22.32 E-value=2.1e+02 Score=20.23 Aligned_cols=47 Identities=9% Similarity=0.041 Sum_probs=30.4
Q ss_pred hhhhhhcCeeEEeccccCCccHHH-HHHHHHHhcccccccCCCCCceEEEEec
Q 028841 65 PNELAEADGFVFGFPTRFGMMAAQ-FKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~-~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+..+|++|+..-+-...-... ++.|++.+.. ...+.++.++++-
T Consensus 93 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~-----~~~~~piilv~nK 140 (214)
T 3q3j_B 93 PLCYSDSDAVLLCFDISRPETVDSALKKWRTEILD-----YCPSTRVLLIGCK 140 (214)
T ss_dssp GGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHH-----HCTTSEEEEEEEC
T ss_pred HHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHH-----hCCCCCEEEEEEC
Confidence 345788999999877665433333 5667776643 2357788877763
No 411
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=22.31 E-value=2.4e+02 Score=23.78 Aligned_cols=32 Identities=22% Similarity=0.458 Sum_probs=20.5
Q ss_pred ceEEEE-EcCCcchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 3 TKVYIV-YYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 3 ~kilii-~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
.+|+|+ |+|. +++.+++.+.+ .|+.++++...
T Consensus 8 ~~IlIlD~g~~--~~~~i~r~lr~-----~G~~~~i~p~~ 40 (525)
T 1gpm_A 8 HRILILDFGSQ--YTQLVARRVRE-----LGVYCELWAWD 40 (525)
T ss_dssp SEEEEEECSCT--THHHHHHHHHH-----TTCEEEEEESC
T ss_pred CEEEEEECCCc--cHHHHHHHHHH-----CCCEEEEEECC
Confidence 368887 4444 56667776644 47788887643
No 412
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=22.29 E-value=1.9e+02 Score=19.73 Aligned_cols=49 Identities=14% Similarity=0.102 Sum_probs=28.5
Q ss_pred hhhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCC--CCCceEEEEec
Q 028841 65 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQL--AGKPAGMFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l--~gK~~~~~~t~ 116 (203)
...+..+|++|+..-.-...-...++.++..+... ..+ .++++.++++-
T Consensus 85 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~~~piilv~nK 135 (190)
T 2h57_A 85 EHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNH---PDIKHRRIPILFFANK 135 (190)
T ss_dssp GGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHS---TTTTTSCCCEEEEEEC
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhC---hhhccCCCeEEEEEeC
Confidence 34578999999986655433233444555554311 122 57787777763
No 413
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=22.26 E-value=50 Score=26.03 Aligned_cols=35 Identities=14% Similarity=0.135 Sum_probs=24.3
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEc
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQV 40 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l 40 (203)
||+++..+..|+...++ .+++.+.+ .|++|.++..
T Consensus 3 rIl~~~~~~~gh~~~~~-~la~~L~~-~GheV~v~~~ 37 (391)
T 3tsa_A 3 RVLVVPLPYPTHLMAMV-PLCWALQA-SGHEVLIAAP 37 (391)
T ss_dssp EEEEECCSCHHHHHTTH-HHHHHHHH-TTCEEEEEEC
T ss_pred EEEEEcCCCcchhhhHH-HHHHHHHH-CCCEEEEecC
Confidence 89988877667655433 35566666 6889988763
No 414
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=22.26 E-value=37 Score=23.53 Aligned_cols=97 Identities=16% Similarity=0.047 Sum_probs=46.5
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhh--hhhcCeeEEeccc-
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNE--LAEADGFVFGFPT- 80 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~--l~~aD~iiigsP~- 80 (203)
||+|+.+...-..+ +-...+.++. .|++++++....... ..........+. ..++ ..++|+||+....
T Consensus 4 ki~il~~~g~~~~e--~~~~~~~l~~-ag~~v~~vs~~~~~v---~~~~g~~i~~~~---~~~~~~~~~~D~livpGG~~ 74 (168)
T 3l18_A 4 KVLFLSADGFEDLE--LIYPLHRIKE-EGHEVYVASFQRGKI---TGKHGYSVNVDL---TFEEVDPDEFDALVLPGGKA 74 (168)
T ss_dssp EEEEECCTTBCHHH--HHHHHHHHHH-TTCEEEEEESSSEEE---ECTTSCEEEECE---EGGGCCGGGCSEEEECCBSH
T ss_pred EEEEEeCCCccHHH--HHHHHHHHHH-CCCEEEEEECCCCEE---ecCCCcEEeccC---ChhHCCHhhCCEEEECCCcC
Confidence 78877665322222 2233455555 588898887654211 000000000010 0122 3469999884321
Q ss_pred c-CCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 81 R-FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 81 y-~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
. .....+.+..|+.+.. -++|+++.++++
T Consensus 75 ~~~~~~~~~l~~~l~~~~-------~~~k~i~aiC~G 104 (168)
T 3l18_A 75 PEIVRLNEKAVMITRRMF-------EDDKPVASICHG 104 (168)
T ss_dssp HHHHTTCHHHHHHHHHHH-------HTTCCEEEETTT
T ss_pred HHHhccCHHHHHHHHHHH-------HCCCEEEEECHh
Confidence 1 1112345666666653 357777777653
No 415
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}
Probab=22.08 E-value=57 Score=23.80 Aligned_cols=35 Identities=17% Similarity=-0.018 Sum_probs=18.0
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
|++++| .|...|--..+++. +.+ .|.+|..++-..
T Consensus 1 Mk~vlV-tGasg~iG~~l~~~----L~~-~g~~V~~~~r~~ 35 (255)
T 2dkn_A 1 MSVIAI-TGSASGIGAALKEL----LAR-AGHTVIGIDRGQ 35 (255)
T ss_dssp -CEEEE-ETTTSHHHHHHHHH----HHH-TTCEEEEEESSS
T ss_pred CcEEEE-eCCCcHHHHHHHHH----HHh-CCCEEEEEeCCh
Confidence 334554 55434433444444 444 577888776543
No 416
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=21.94 E-value=1.7e+02 Score=21.11 Aligned_cols=37 Identities=19% Similarity=0.115 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
|..|+.+|.+...|--+.+++.++ + .|.+|.+.+...
T Consensus 1 m~~k~vlITGas~gIG~~~a~~l~----~-~G~~V~~~~r~~ 37 (236)
T 1ooe_A 1 MSSGKVIVYGGKGALGSAILEFFK----K-NGYTVLNIDLSA 37 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHH----H-TTEEEEEEESSC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHH----H-CCCEEEEEecCc
Confidence 545667777765554455555554 4 577887776543
No 417
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=21.82 E-value=68 Score=22.42 Aligned_cols=74 Identities=19% Similarity=0.087 Sum_probs=33.8
Q ss_pred CC-ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCC-CCCCCCC--CChhhhhhcCeeEE
Q 028841 1 MA-TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAP-PKSDVPI--ITPNELAEADGFVF 76 (203)
Q Consensus 1 Mm-~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~-~~~d~~~--~~~~~l~~aD~iii 76 (203)
|+ ++|+| .|. |..+...+.+.+.+ .|.++..++-.......... .... ..-|+.+ ...+.+..+|.||.
T Consensus 1 M~~~~ilV-tGa----tG~iG~~l~~~l~~-~g~~V~~~~r~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~d~vi~ 73 (206)
T 1hdo_A 1 MAVKKIAI-FGA----TGQTGLTTLAQAVQ-AGYEVTVLVRDSSRLPSEGP-RPAHVVVGDVLQAADVDKTVAGQDAVIV 73 (206)
T ss_dssp CCCCEEEE-EST----TSHHHHHHHHHHHH-TTCEEEEEESCGGGSCSSSC-CCSEEEESCTTSHHHHHHHHTTCSEEEE
T ss_pred CCCCEEEE-EcC----CcHHHHHHHHHHHH-CCCeEEEEEeChhhcccccC-CceEEEEecCCCHHHHHHHHcCCCEEEE
Confidence 54 35555 443 33455555555555 57788777653221100000 0000 0112211 11344667899998
Q ss_pred ecccc
Q 028841 77 GFPTR 81 (203)
Q Consensus 77 gsP~y 81 (203)
.....
T Consensus 74 ~a~~~ 78 (206)
T 1hdo_A 74 LLGTR 78 (206)
T ss_dssp CCCCT
T ss_pred CccCC
Confidence 77654
No 418
>3a9s_A D-arabinose isomerase; rossmann fold, beta barrel, carbohydrate metabolism, cytoplasm, fucose metabolism, manganese, metal- binding; 1.60A {Geobacillus pallidus} PDB: 3a9r_A 3a9t_A*
Probab=21.78 E-value=72 Score=27.73 Aligned_cols=15 Identities=7% Similarity=-0.310 Sum_probs=12.4
Q ss_pred hcCeeEEeccccCCc
Q 028841 70 EADGFVFGFPTRFGM 84 (203)
Q Consensus 70 ~aD~iiigsP~y~~~ 84 (203)
+.|++|+.+|+|.+.
T Consensus 84 ~vd~ii~~~~~w~yg 98 (595)
T 3a9s_A 84 GVGVSITVTPCWCYG 98 (595)
T ss_dssp TEEEEEEEESSCCCG
T ss_pred CCCEEEEEeccCCCH
Confidence 558999999998875
No 419
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=21.76 E-value=86 Score=18.08 Aligned_cols=36 Identities=22% Similarity=0.281 Sum_probs=16.8
Q ss_pred EEEEEcCCcchHHHHH---HHHHHhcccCCCceEEEEEcCC
Q 028841 5 VYIVYYSMYGHVEKLA---EEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 5 ilii~~S~~g~T~~la---~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
++.++.+.-+..+.+. +.+++... .++.+..+|+.+
T Consensus 6 vv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~~vd~~~ 44 (85)
T 1fo5_A 6 IELFTSPMCPHCPAAKRVVEEVANEMP--DAVEVEYINVME 44 (85)
T ss_dssp EEEEECCCSSCCCTHHHHHHHHHHHCS--SSEEEEEEESSS
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHHcC--CceEEEEEECCC
Confidence 3333334345444444 44444443 145666667654
No 420
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=21.70 E-value=71 Score=25.57 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=26.4
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
||+|+.....|+...++. +++.|.+ .|.+|.++--.
T Consensus 2 rIli~~~gt~Ghv~p~~~-La~~L~~-~Gh~V~v~~~~ 37 (404)
T 3h4t_A 2 GVLITGCGSRGDTEPLVA-LAARLRE-LGADARMCLPP 37 (404)
T ss_dssp CEEEEEESSHHHHHHHHH-HHHHHHH-TTCCEEEEECG
T ss_pred eEEEEeCCCCccHHHHHH-HHHHHHH-CCCeEEEEeCH
Confidence 898886666788776665 5677777 69999987643
No 421
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=21.70 E-value=2e+02 Score=23.33 Aligned_cols=32 Identities=19% Similarity=0.209 Sum_probs=20.4
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEc
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQV 40 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l 40 (203)
|+||||+... .++..+.+.+++ .|+++.+++-
T Consensus 1 ~k~ilI~g~g------~~~~~i~~a~~~-~G~~vv~v~~ 32 (451)
T 2vpq_A 1 MKKVLIANRG------EIAVRIIRACRD-LGIQTVAIYS 32 (451)
T ss_dssp -CEEEECCCH------HHHHHHHHHHHH-TTCEEEEEEE
T ss_pred CceEEEeCCC------HHHHHHHHHHHH-cCCEEEEEec
Confidence 4688886422 245556666666 6888888865
No 422
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=21.66 E-value=82 Score=23.35 Aligned_cols=34 Identities=12% Similarity=0.143 Sum_probs=25.6
Q ss_pred EEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEc
Q 028841 6 YIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQV 40 (203)
Q Consensus 6 lii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l 40 (203)
.+++.+.......+++.|++.+++ -|+++++..+
T Consensus 131 ~l~~~~~~~~~~~~a~~iq~~l~~-iGi~v~i~~~ 164 (258)
T 3lvu_A 131 RFLLRQGDSDMQTVLEIYTRALER-LGIAAQIEKV 164 (258)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHT-TTCCCEEEEE
T ss_pred EEEecCCChhHHHHHHHHHHHHHH-cCCeeEEEec
Confidence 344444445677899999999999 7999887765
No 423
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=21.66 E-value=90 Score=21.00 Aligned_cols=48 Identities=8% Similarity=0.034 Sum_probs=30.3
Q ss_pred hhhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 65 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
...+..+|++|+....-...-...++.|++.+... ...++++.++++-
T Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~piilv~nK 129 (179)
T 1z0f_A 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL----TNPNTVIILIGNK 129 (179)
T ss_dssp HHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEEC
T ss_pred HHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEEC
Confidence 34578899999987765544445566666665422 2246777777663
No 424
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=21.63 E-value=2.4e+02 Score=20.62 Aligned_cols=37 Identities=19% Similarity=0.028 Sum_probs=26.9
Q ss_pred eEEEEEcC-CcchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 4 KVYIVYYS-MYGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 4 kilii~~S-~~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
+|.++..+ .+.....+.+.+.+.+++ .|.++.+.+..
T Consensus 10 ~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~ 47 (277)
T 3cs3_A 10 IIGVYLADYGGSFYGELLEGIKKGLAL-FDYEMIVCSGK 47 (277)
T ss_dssp EEEEEECSSCTTTHHHHHHHHHHHHHT-TTCEEEEEEST
T ss_pred EEEEEecCCCChhHHHHHHHHHHHHHH-CCCeEEEEeCC
Confidence 46666554 345667789999999888 79888877654
No 425
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=21.61 E-value=1.9e+02 Score=19.48 Aligned_cols=48 Identities=8% Similarity=-0.001 Sum_probs=29.2
Q ss_pred hhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 66 NELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..+..+|++|+....-...-...++.|++.+... ....++++.++++-
T Consensus 89 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~~piilv~nK 136 (195)
T 3bc1_A 89 AFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMH---AYSENPDIVLCGNK 136 (195)
T ss_dssp HTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH---SSSSSCCEEEEEEC
T ss_pred HHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh---cCCCCCCEEEEEEC
Confidence 3467899999987665543334456666665321 12257787777763
No 426
>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}
Probab=21.57 E-value=1.4e+02 Score=19.11 Aligned_cols=28 Identities=29% Similarity=0.364 Sum_probs=19.8
Q ss_pred CCceEEEEEcCCcch---HHHHHHHHHHhcc
Q 028841 1 MATKVYIVYYSMYGH---VEKLAEEIKKGAS 28 (203)
Q Consensus 1 Mm~kilii~~S~~g~---T~~la~~i~~~~~ 28 (203)
||.+|.|.|++.-|. ...+++.+...+.
T Consensus 1 ~~~~V~I~YC~~C~y~~ra~~laqeLl~~Fp 31 (96)
T 2npb_A 1 MALAVRVVYSGACGYKPKYLQLKEKLEHEFP 31 (96)
T ss_dssp CCEEEEEECCCCSCHHHHHHHHHHHHHHHSB
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhCC
Confidence 778999999987654 4456666666664
No 427
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=21.57 E-value=1.2e+02 Score=23.60 Aligned_cols=29 Identities=10% Similarity=0.019 Sum_probs=22.5
Q ss_pred hhcCeeEEeccccCCccHHHHHHHHHHhc
Q 028841 69 AEADGFVFGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 69 ~~aD~iiigsP~y~~~~~~~~k~~ld~~~ 97 (203)
..+|++++.+|-|+.--...+..++..+.
T Consensus 106 ~Gadavlv~~P~y~~~s~~~l~~~f~~va 134 (301)
T 1xky_A 106 VGVDAVMLVAPYYNKPSQEGMYQHFKAIA 134 (301)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHH
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHH
Confidence 47899999999998765666777777664
No 428
>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*
Probab=21.44 E-value=46 Score=25.80 Aligned_cols=16 Identities=25% Similarity=0.127 Sum_probs=11.1
Q ss_pred hhhhhcCeeEEecccc
Q 028841 66 NELAEADGFVFGFPTR 81 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y 81 (203)
+.+..+|.||..+...
T Consensus 71 ~~~~~~d~vih~A~~~ 86 (348)
T 1oc2_A 71 KLAAKADAIVHYAAES 86 (348)
T ss_dssp HHHTTCSEEEECCSCC
T ss_pred HHhhcCCEEEECCccc
Confidence 3456789998876644
No 429
>3dah_A Ribose-phosphate pyrophosphokinase; pyrophosphoki seattle structural genomics center for infectious disease, magnesium, metal binding; HET: AMP; 2.30A {Burkholderia pseudomallei}
Probab=21.39 E-value=1.1e+02 Score=24.12 Aligned_cols=59 Identities=14% Similarity=0.040 Sum_probs=32.6
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecc
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFP 79 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP 79 (203)
|+++.|+.++.+ ..+|+.|++.+.. .=.++++....+-... . ...+.++..|.+|+.+-
T Consensus 5 ~~~~~i~~g~~~---~~La~~ia~~lg~-~l~~~~~~~F~dGE~~--v-------------~i~esvrg~dV~iiqs~ 63 (319)
T 3dah_A 5 HDGLMVFTGNAN---PALAQEVVKILGI-PLGKAMVSRFSDGEIQ--V-------------EIQENVRGKDVFVLQST 63 (319)
T ss_dssp -CCEEEEECSSC---HHHHHHHHHHHTS-CCCCEEEEECTTSCEE--E-------------EECSCCBTCEEEEECCC
T ss_pred CCceEEEECCCC---HHHHHHHHHHhCC-ceeeeEEEECCCCCEE--E-------------EECCCcCCCeEEEEccC
Confidence 556777766543 4688888888764 2224555554443210 0 01235667788888653
No 430
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti}
Probab=21.38 E-value=1.2e+02 Score=25.05 Aligned_cols=75 Identities=11% Similarity=0.039 Sum_probs=43.1
Q ss_pred cchHHHHHHHHHHhcccCCCce--EEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEe---cccc------
Q 028841 13 YGHVEKLAEEIKKGASSVEGVE--AKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFG---FPTR------ 81 (203)
Q Consensus 13 ~g~T~~la~~i~~~~~~~~g~~--v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiig---sP~y------ 81 (203)
.|-...+..++.+.+.. .+++ .+.+++... ...... +.+|+...+.++++|++++| +|.|
T Consensus 39 DGIGpEI~~~~~~vL~~-~~~~i~~~~~~~G~~----~~~~tg----~~lp~etl~aik~~da~LkGav~tP~~~~~~e~ 109 (427)
T 3us8_A 39 DEMTRIIWQFIKDKLIH-PYLDLDLEYYDLGVE----NRDATD----DQVTIDAANAIKKHGVGVKCATITPDEGRVEEF 109 (427)
T ss_dssp CHHHHHHHHHHHHHHTT-TTEECCEEEEECCHH----HHHHTT----THHHHHHHHHHHHHSEEEECCCCCCCHHHHHHH
T ss_pred CcccHHHHHHHHHHHHh-cCCCeEEEEEeCCHH----HHHhhC----CcCCHHHHHHHHHCCEEEECCccCCCccccccc
Confidence 56677788888887766 4544 445554321 111000 01122235678999999976 7876
Q ss_pred -----CCccHHHHHHHHHHh
Q 028841 82 -----FGMMAAQFKAFLDAT 96 (203)
Q Consensus 82 -----~~~~~~~~k~~ld~~ 96 (203)
|.++--.++.-||..
T Consensus 110 ~l~~~~~s~n~~LRk~Ldly 129 (427)
T 3us8_A 110 KLKKMWKSPNGTIRNILGGV 129 (427)
T ss_dssp TCSSCCCCHHHHHHHHHCSE
T ss_pred cccccccCchHHHHHHhCCe
Confidence 234445677777753
No 431
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=21.37 E-value=2.3e+02 Score=21.93 Aligned_cols=29 Identities=24% Similarity=0.369 Sum_probs=22.6
Q ss_pred hhcCeeEEeccccCCccHHHHHHHHHHhc
Q 028841 69 AEADGFVFGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 69 ~~aD~iiigsP~y~~~~~~~~k~~ld~~~ 97 (203)
..+|++++.+|-|+.--...+..++..+.
T Consensus 98 ~Gadavlv~~P~y~~~~~~~l~~~f~~va 126 (300)
T 3eb2_A 98 LGADGILAILEAYFPLKDAQIESYFRAIA 126 (300)
T ss_dssp HTCSEEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHH
Confidence 36999999999998765666777777664
No 432
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=21.36 E-value=72 Score=25.94 Aligned_cols=38 Identities=16% Similarity=0.081 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
|.|||+||=+...|-+ .|..+++.. .+.+|.+++-.+.
T Consensus 1 M~K~VvIIGgG~aGl~--aA~~L~~~~---~~~~VtlI~~~~~ 38 (430)
T 3hyw_A 1 MAKHVVVIGGGVGGIA--TAYNLRNLM---PDLKITLISDRPY 38 (430)
T ss_dssp -CCEEEEECSSHHHHH--HHHHHHHHC---TTCEEEEECSSSE
T ss_pred CCCcEEEECCCHHHHH--HHHHHhccC---cCCeEEEEcCCCC
Confidence 6667777655555543 456665543 3468999986653
No 433
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=21.34 E-value=75 Score=22.27 Aligned_cols=46 Identities=11% Similarity=0.145 Sum_probs=27.8
Q ss_pred hhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEe
Q 028841 66 NELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYS 115 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t 115 (203)
..+..+|++|+..-.-...-...++.|++.+... ...++++.++++
T Consensus 96 ~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~N 141 (199)
T 2p5s_A 96 SYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDA----AHETVPIMLVGN 141 (199)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH----C---CCEEEEEE
T ss_pred HHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHh----cCCCCCEEEEEE
Confidence 4577899999987665544444566666665421 224677777766
No 434
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=21.33 E-value=41 Score=26.46 Aligned_cols=14 Identities=7% Similarity=-0.149 Sum_probs=11.5
Q ss_pred hcCeeEEeccccCC
Q 028841 70 EADGFVFGFPTRFG 83 (203)
Q Consensus 70 ~aD~iiigsP~y~~ 83 (203)
+.|+|++++|....
T Consensus 66 ~~D~V~i~tp~~~h 79 (344)
T 3mz0_A 66 NVDAVLVTSWGPAH 79 (344)
T ss_dssp TCCEEEECSCGGGH
T ss_pred CCCEEEECCCchhH
Confidence 38999999998754
No 435
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=21.33 E-value=61 Score=24.58 Aligned_cols=30 Identities=17% Similarity=0.232 Sum_probs=20.9
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEE
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQ 39 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~ 39 (203)
|||| +|-|--|..++.+.|.+ .|++|..+.
T Consensus 2 kILV-----TGatGfIG~~L~~~L~~-~G~~V~~l~ 31 (298)
T 4b4o_A 2 RVLV-----GGGTGFIGTALTQLLNA-RGHEVTLVS 31 (298)
T ss_dssp EEEE-----ETTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred EEEE-----ECCCCHHHHHHHHHHHH-CCCEEEEEE
Confidence 8887 44445567777777766 688888764
No 436
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=21.33 E-value=1.7e+02 Score=22.58 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=17.4
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEE
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKL 37 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~ 37 (203)
|+.|++-.... ++.+.+.+++ .|+++.+
T Consensus 31 ki~iv~~~~~~-----~~~l~~~L~~-~g~~v~~ 58 (278)
T 1z0s_A 31 RAAVVYKTDGH-----VKRIEEALKR-LEVEVEL 58 (278)
T ss_dssp EEEEEESSSTT-----HHHHHHHHHH-TTCEEEE
T ss_pred EEEEEeCCcHH-----HHHHHHHHHH-CCCEEEE
Confidence 67777653222 6666666766 6777754
No 437
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=21.32 E-value=29 Score=22.88 Aligned_cols=14 Identities=0% Similarity=0.088 Sum_probs=11.5
Q ss_pred hhhcCeeEEecccc
Q 028841 68 LAEADGFVFGFPTR 81 (203)
Q Consensus 68 l~~aD~iiigsP~y 81 (203)
+..+|.||+.+|..
T Consensus 68 ~~~~d~vi~~~~~~ 81 (144)
T 2hmt_A 68 IRNFEYVIVAIGAN 81 (144)
T ss_dssp GGGCSEEEECCCSC
T ss_pred CCCCCEEEECCCCc
Confidence 56899999999863
No 438
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=21.21 E-value=2e+02 Score=19.51 Aligned_cols=46 Identities=20% Similarity=0.182 Sum_probs=26.3
Q ss_pred hhhhhcCeeEEeccccCCccH------HHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 66 NELAEADGFVFGFPTRFGMMA------AQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~------~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..+..+|++|+..-.-..... ..+..|+..+. ....+.++.++++-
T Consensus 93 ~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-----~~~~~~piilv~NK 144 (198)
T 3t1o_A 93 LILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-----LTLDDVPIVIQVNK 144 (198)
T ss_dssp HHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-----CCTTSSCEEEEEEC
T ss_pred HHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-----cccCCCCEEEEEEc
Confidence 457789999997665532221 12333333331 13467888888764
No 439
>4got_A Methionine-binding lipoprotein METQ; NLPA lipoprotein, PF03180 family, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.95A {Bacillus subtilis subsp}
Probab=21.20 E-value=1.4e+02 Score=22.73 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=29.6
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETL 44 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~ 44 (203)
|.+.|-.|+.-+.+ +.+.+++.+++ .|++++++...+..
T Consensus 6 k~i~vgat~~P~ae-il~~vk~~l~k-~Gi~leiv~F~Dy~ 44 (249)
T 4got_A 6 KEIVVAATKTPHAE-ILKEAEPLLKE-KGYTLKVKVLSDYK 44 (249)
T ss_dssp TEEEEEECTTTHHH-HHHHHHHHHHT-TTCEEEEECCSSTH
T ss_pred ceEEEEeCCCCHHH-HHHHHHHHHHh-cCCeEEEEEeCCcc
Confidence 44555566666655 67888999988 79999999998863
No 440
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=21.18 E-value=1.1e+02 Score=20.85 Aligned_cols=47 Identities=6% Similarity=-0.007 Sum_probs=28.7
Q ss_pred hhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 66 NELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..+..+|++|+....-...--..++.|++.+... ...+.++.++++-
T Consensus 76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK 122 (183)
T 2fu5_C 76 AYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEH----ASADVEKMILGNK 122 (183)
T ss_dssp TTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH----SCTTCEEEEEEEC
T ss_pred HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEEC
Confidence 3567899999987665533234455666655321 2346777777763
No 441
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=21.15 E-value=1.6e+02 Score=20.78 Aligned_cols=36 Identities=14% Similarity=0.153 Sum_probs=23.8
Q ss_pred CCceEEEEEcCC-cchHHHHHHHHHHhcccCCCceEEEE
Q 028841 1 MATKVYIVYYSM-YGHVEKLAEEIKKGASSVEGVEAKLW 38 (203)
Q Consensus 1 Mm~kilii~~S~-~g~T~~la~~i~~~~~~~~g~~v~~~ 38 (203)
|..++.+++|.+ .|.|..+.+.+.+... .|..+-++
T Consensus 1 ~~g~i~vi~G~~gsGKTT~ll~~~~~~~~--~g~~v~~~ 37 (184)
T 2orw_A 1 MSGKLTVITGPMYSGKTTELLSFVEIYKL--GKKKVAVF 37 (184)
T ss_dssp -CCCEEEEEESTTSSHHHHHHHHHHHHHH--TTCEEEEE
T ss_pred CccEEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEE
Confidence 445688889995 7988877777665544 35555554
No 442
>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}
Probab=21.14 E-value=91 Score=24.45 Aligned_cols=17 Identities=24% Similarity=0.106 Sum_probs=14.1
Q ss_pred hhhhhhcCeeEEecccc
Q 028841 65 PNELAEADGFVFGFPTR 81 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y 81 (203)
.+.+.++|.||..||.-
T Consensus 178 ~eav~~aDIVi~aT~s~ 194 (313)
T 3hdj_A 178 ADIAAQADIVVTATRST 194 (313)
T ss_dssp HHHHHHCSEEEECCCCS
T ss_pred HHHHhhCCEEEEccCCC
Confidence 45678999999999973
No 443
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=21.07 E-value=32 Score=30.40 Aligned_cols=32 Identities=22% Similarity=0.225 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEE
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQ 39 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~ 39 (203)
||+||||+... .++..+.+.+++ .|+++..++
T Consensus 1 m~~kiLIanrG------eia~riiraar~-lGi~~vav~ 32 (681)
T 3n6r_A 1 MFNKILIANRG------EIACRVIKTARK-MGISTVAIY 32 (681)
T ss_dssp -CCCBCBSCCH------HHHHHHHHHHGG-GSCCBCCEE
T ss_pred CCCEEEEECCc------HHHHHHHHHHHH-cCCEEEEEE
Confidence 88899997533 467777788888 688877764
No 444
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=21.06 E-value=1.2e+02 Score=21.56 Aligned_cols=36 Identities=19% Similarity=0.136 Sum_probs=19.8
Q ss_pred CCCceEEEEec---CCCCCChHHHHHHHHHHHHHcCcEEecCC
Q 028841 106 AGKPAGMFYST---GSQGGGQETTALTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 106 ~gK~~~~~~t~---g~~~~~~~~~~~~l~~~l~~~g~~~v~~~ 145 (203)
.+||+.++-.. -|.. ..+..+ ...|...|..+++..
T Consensus 109 ~~~pvvl~Pamn~~m~~~---p~~~~N-l~~L~~~G~~iv~P~ 147 (175)
T 3qjg_A 109 AFEKLSIFPNMNLRMWEN---PVTQNN-IRLLKDYGVSIYPAN 147 (175)
T ss_dssp CGGGEEEEECEEHHHHTC---HHHHHH-HHHHHHTTCEECCCC
T ss_pred cCCCEEEEecCChhhhcC---HHHHHH-HHHHHHCCCEEECCC
Confidence 36887776533 2221 112233 345667899998754
No 445
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=21.05 E-value=90 Score=21.72 Aligned_cols=46 Identities=4% Similarity=0.006 Sum_probs=29.2
Q ss_pred hhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEe
Q 028841 66 NELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYS 115 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t 115 (203)
..+..+|++|+..-.-...-...++.|++.+... ...++++.++++
T Consensus 94 ~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~----~~~~~piilV~N 139 (192)
T 2il1_A 94 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKY----ASEDAELLLVGN 139 (192)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEE
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEE
Confidence 4568899999987766544344456666655422 234677777776
No 446
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=21.04 E-value=2.4e+02 Score=23.62 Aligned_cols=30 Identities=10% Similarity=0.099 Sum_probs=18.6
Q ss_pred EEEE-EcCCcchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 5 VYIV-YYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 5 ilii-~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
|+|| |+| ++|..+++.+.+ .|+.++++...
T Consensus 2 i~ilD~g~--~~~~~i~r~l~~-----~G~~~~i~p~~ 32 (503)
T 2ywb_A 2 VLVLDFGS--QYTRLIARRLRE-----LRAFSLILPGD 32 (503)
T ss_dssp EEEEESSC--TTHHHHHHHHHT-----TTCCEEEEETT
T ss_pred EEEEECCC--cHHHHHHHHHHH-----CCCEEEEEECC
Confidence 6776 444 446666666644 47778877653
No 447
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=21.02 E-value=1.3e+02 Score=20.97 Aligned_cols=46 Identities=9% Similarity=0.010 Sum_probs=27.2
Q ss_pred hhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEe
Q 028841 66 NELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYS 115 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t 115 (203)
..+..+|++|+..-.-...--..++.|++.+... ...++++.++++
T Consensus 101 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~p~ilv~n 146 (199)
T 3l0i_B 101 SYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY----ASENVNKLLVGN 146 (199)
T ss_dssp C--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSC----C-CCSEEEEC-C
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh----ccCCCCEEEEEE
Confidence 4578899999987766655445667777766422 123667766655
No 448
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Probab=20.99 E-value=98 Score=20.77 Aligned_cols=25 Identities=12% Similarity=0.020 Sum_probs=19.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhh
Q 028841 176 QPTELELEQAFHQGKHIAGIAKKLK 200 (203)
Q Consensus 176 ~~~~~~~~~~~~~g~~l~~~~~~~~ 200 (203)
.-+++..+++++++++|++.+..+.
T Consensus 17 l~d~el~~rar~LA~kIv~pv~el~ 41 (121)
T 3kp1_E 17 LSDEELQTRFWEMAEKIVDPLLDLG 41 (121)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777899999999998776653
No 449
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=20.97 E-value=2.2e+02 Score=21.81 Aligned_cols=38 Identities=8% Similarity=0.069 Sum_probs=28.1
Q ss_pred eEEEEEcCC-cchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 4 KVYIVYYSM-YGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilii~~S~-~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
+|.++..+. +.....+.+.+.+.+.+ .|.++.+.+..+
T Consensus 66 ~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~ 104 (333)
T 3jvd_A 66 LVGVIVPDLSNEYYSESLQTIQQDLKA-AGYQMLVAEANS 104 (333)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHH-HTCEEEEEECCS
T ss_pred EEEEEeCCCcChHHHHHHHHHHHHHHH-CCCEEEEECCCC
Confidence 466666543 45677789999999888 699988887765
No 450
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=20.96 E-value=98 Score=24.73 Aligned_cols=38 Identities=16% Similarity=0.111 Sum_probs=24.3
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
+||+++.....|+..-+.. +++.+.+ .|++|.++.-..
T Consensus 13 ~~Il~~~~~~~GHv~p~l~-la~~L~~-~Gh~V~~~~~~~ 50 (424)
T 2iya_A 13 RHISFFNIPGHGHVNPSLG-IVQELVA-RGHRVSYAITDE 50 (424)
T ss_dssp CEEEEECCSCHHHHHHHHH-HHHHHHH-TTCEEEEEECGG
T ss_pred ceEEEEeCCCCcccchHHH-HHHHHHH-CCCeEEEEeCHH
Confidence 4888875555687655443 4455555 588988886543
No 451
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=20.95 E-value=1.8e+02 Score=21.55 Aligned_cols=36 Identities=14% Similarity=0.107 Sum_probs=24.0
Q ss_pred ceEEEEEc--CCcchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 3 TKVYIVYY--SMYGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 3 ~kilii~~--S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
.|+.+|.+ |..|--+.+|+.++ + .|+.|-+.+..+.
T Consensus 6 gK~alVTGaa~~~GIG~aiA~~la----~-~Ga~Vvi~~r~~~ 43 (256)
T 4fs3_A 6 NKTYVIMGIANKRSIAFGVAKVLD----Q-LGAKLVFTYRKER 43 (256)
T ss_dssp TCEEEEECCCSTTCHHHHHHHHHH----H-TTCEEEEEESSGG
T ss_pred CCEEEEECCCCCchHHHHHHHHHH----H-CCCEEEEEECCHH
Confidence 47888887 44565555555554 4 6888988887654
No 452
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=20.94 E-value=75 Score=21.40 Aligned_cols=27 Identities=7% Similarity=0.183 Sum_probs=23.2
Q ss_pred hcCeeEEeccccCCccHHHHHHHHHHh
Q 028841 70 EADGFVFGFPTRFGMMAAQFKAFLDAT 96 (203)
Q Consensus 70 ~aD~iiigsP~y~~~~~~~~k~~ld~~ 96 (203)
.-|.|||||-.+.-.+|+.++.+|...
T Consensus 68 ~pevliiGtG~~~~~l~p~~~~~l~~~ 94 (128)
T 2fi9_A 68 QIEVLLIGTGVELLRLPEELRVLLWEK 94 (128)
T ss_dssp GCSEEEEECTTSCCCCCHHHHHHHHHT
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHc
Confidence 379999999999988999988887754
No 453
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*
Probab=20.92 E-value=58 Score=24.36 Aligned_cols=72 Identities=17% Similarity=0.094 Sum_probs=36.2
Q ss_pred CCceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCC-CCCCCCCCC--ChhhhhhcCeeEEe
Q 028841 1 MATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSA-PPKSDVPII--TPNELAEADGFVFG 77 (203)
Q Consensus 1 Mm~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~-~~~~d~~~~--~~~~l~~aD~iiig 77 (203)
|+.|.++|.|. |.-|..++++.+.+ .|.+|.+.+........ ... ...-|+.+. ..+.+...|.||-.
T Consensus 1 m~~k~vlVTGa----sg~IG~~la~~L~~-~G~~V~~~~r~~~~~~~----~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~ 71 (267)
T 3rft_A 1 MAMKRLLVTGA----AGQLGRVMRERLAP-MAEILRLADLSPLDPAG----PNEECVQCDLADANAVNAMVAGCDGIVHL 71 (267)
T ss_dssp CCEEEEEEEST----TSHHHHHHHHHTGG-GEEEEEEEESSCCCCCC----TTEEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred CCCCEEEEECC----CCHHHHHHHHHHHh-cCCEEEEEecCCccccC----CCCEEEEcCCCCHHHHHHHHcCCCEEEEC
Confidence 54455555554 34466666666666 57788887765532110 000 001122110 12345678999887
Q ss_pred cccc
Q 028841 78 FPTR 81 (203)
Q Consensus 78 sP~y 81 (203)
....
T Consensus 72 Ag~~ 75 (267)
T 3rft_A 72 GGIS 75 (267)
T ss_dssp CSCC
T ss_pred CCCc
Confidence 6553
No 454
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=20.84 E-value=1.9e+02 Score=20.69 Aligned_cols=71 Identities=23% Similarity=0.135 Sum_probs=35.0
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCC-CCCCCCC--CC-hhhhhhcCeeEEecc
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAP-PKSDVPI--IT-PNELAEADGFVFGFP 79 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~-~~~d~~~--~~-~~~l~~aD~iiigsP 79 (203)
||+|+=+ | .+...+++.+.+ .|.++.++|-............... ...|... .. ...+.++|.+|+.+|
T Consensus 2 ~iiIiG~---G---~~G~~la~~L~~-~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 74 (218)
T 3l4b_C 2 KVIIIGG---E---TTAYYLARSMLS-RKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTP 74 (218)
T ss_dssp CEEEECC---H---HHHHHHHHHHHH-TTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCS
T ss_pred EEEEECC---C---HHHHHHHHHHHh-CCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecC
Confidence 6666532 2 344555555555 5789999985432211111111110 0111111 01 123678999999998
Q ss_pred cc
Q 028841 80 TR 81 (203)
Q Consensus 80 ~y 81 (203)
.-
T Consensus 75 ~d 76 (218)
T 3l4b_C 75 RD 76 (218)
T ss_dssp CH
T ss_pred Cc
Confidence 64
No 455
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=20.73 E-value=2.4e+02 Score=23.30 Aligned_cols=71 Identities=14% Similarity=0.107 Sum_probs=36.6
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCC-CCCCC--CCC-ChhhhhhcCeeEEecc
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAP-PKSDV--PII-TPNELAEADGFVFGFP 79 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~-~~~d~--~~~-~~~~l~~aD~iiigsP 79 (203)
||+|+=+. ++...+++.|.+ .|.++.++|-.........+..... ...|- ++. ....+.+||.+|..|+
T Consensus 5 ~iiI~G~G------~vG~~la~~L~~-~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~ 77 (461)
T 4g65_A 5 KIIILGAG------QVGGTLAENLVG-ENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTN 77 (461)
T ss_dssp EEEEECCS------HHHHHHHHHTCS-TTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCS
T ss_pred EEEEECCC------HHHHHHHHHHHH-CCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcC
Confidence 66665443 345556777776 6899999997543222111111100 00011 111 1235678888887776
Q ss_pred cc
Q 028841 80 TR 81 (203)
Q Consensus 80 ~y 81 (203)
-=
T Consensus 78 ~D 79 (461)
T 4g65_A 78 TD 79 (461)
T ss_dssp CH
T ss_pred Ch
Confidence 53
No 456
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*
Probab=20.69 E-value=1.8e+02 Score=24.19 Aligned_cols=59 Identities=15% Similarity=0.167 Sum_probs=31.4
Q ss_pred cCeeEEeccccCCccHHHHHHHHHHhcccccccCC-CCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCC
Q 028841 71 ADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQL-AGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 71 aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l-~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~ 145 (203)
+|.||+..|... .++..++.+.. .+ +|+. +...+. +.... ...+.+.+...|..+++.+
T Consensus 79 aDvVil~Vp~~~-----~v~~vl~~l~~-----~l~~g~i---IId~s~--g~~~~-t~~l~~~l~~~g~~~v~~p 138 (480)
T 2zyd_A 79 PRRILLMVKAGA-----GTDAAIDSLKP-----YLDKGDI---IIDGGN--TFFQD-TIRRNRELSAEGFNFIGTG 138 (480)
T ss_dssp SCEEEECSCSSS-----HHHHHHHHHGG-----GCCTTCE---EEECSC--CCHHH-HHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEECCCHH-----HHHHHHHHHHh-----hcCCCCE---EEECCC--CCHHH-HHHHHHHHHHCCCCeeCCc
Confidence 999999999743 35666666542 23 2332 223222 11111 2335566666677766543
No 457
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=20.64 E-value=2e+02 Score=19.33 Aligned_cols=55 Identities=11% Similarity=0.070 Sum_probs=31.7
Q ss_pred hcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCC
Q 028841 70 EADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIG 145 (203)
Q Consensus 70 ~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~ 145 (203)
..|.+|+..|. ...+..++..++ .|.+..++ ..|.. . .++.+.....|+.++|..
T Consensus 77 ~vDlvvi~vp~--~~~~~vv~~~~~-----------~gi~~i~~-~~g~~---~----~~l~~~a~~~Gi~vvGpn 131 (144)
T 2d59_A 77 KIEVVDLFVKP--KLTMEYVEQAIK-----------KGAKVVWF-QYNTY---N----REASKKADEAGLIIVANR 131 (144)
T ss_dssp CCSEEEECSCH--HHHHHHHHHHHH-----------HTCSEEEE-CTTCC---C----HHHHHHHHHTTCEEEESC
T ss_pred CCCEEEEEeCH--HHHHHHHHHHHH-----------cCCCEEEE-CCCch---H----HHHHHHHHHcCCEEEcCC
Confidence 68999999987 333333333332 23333333 33321 2 236677788999999864
No 458
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=20.60 E-value=1.7e+02 Score=22.51 Aligned_cols=34 Identities=12% Similarity=-0.035 Sum_probs=24.4
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEE
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKL 37 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~ 37 (203)
+||.+||.+........++.+.+.+++ .|.++..
T Consensus 150 ~~iaii~~~~~~~~~~~~~~~~~~~~~-~G~~v~~ 183 (366)
T 3td9_A 150 KRVVVFTDVEQDYSVGLSNFFINKFTE-LGGQVKR 183 (366)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHH-TTCEEEE
T ss_pred cEEEEEEeCCCcHHHHHHHHHHHHHHH-CCCEEEE
Confidence 578898875544555678888888888 6776543
No 459
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=20.59 E-value=1.1e+02 Score=23.25 Aligned_cols=30 Identities=17% Similarity=0.022 Sum_probs=23.9
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceE
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEA 35 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v 35 (203)
|++||+- ++++...+++.+.+.+++ .|+++
T Consensus 2 ki~ii~n-~~~~~~~~~~~l~~~l~~-~g~~v 31 (272)
T 2i2c_A 2 KYMITSK-GDEKSDLLRLNMIAGFGE-YDMEY 31 (272)
T ss_dssp EEEEEEC-CSHHHHHHHHHHHHHHTT-SSCEE
T ss_pred EEEEEEC-CCHHHHHHHHHHHHHHHH-CCCEe
Confidence 7888776 566778889999999988 67766
No 460
>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A
Probab=20.57 E-value=3.4e+02 Score=22.75 Aligned_cols=119 Identities=11% Similarity=0.194 Sum_probs=57.5
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCC-CCCChhhh----hhcCeeEEe
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDV-PIITPNEL----AEADGFVFG 77 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~-~~~~~~~l----~~aD~iiig 77 (203)
++|.|| |. | .|...++..+.+ .|.+|.++|......+...+...... .+ .....+++ ..+|.||+.
T Consensus 5 ~kIgiI-Gl--G---~MG~~lA~~L~~-~G~~V~v~dr~~~~~~~l~~~g~~g~--~i~~~~s~~e~v~~l~~aDvVil~ 75 (484)
T 4gwg_A 5 ADIALI-GL--A---VMGQNLILNMND-HGFVVCAFNRTVSKVDDFLANEAKGT--KVVGAQSLKEMVSKLKKPRRIILL 75 (484)
T ss_dssp BSEEEE-CC--S---HHHHHHHHHHHH-TTCCEEEECSSTHHHHHHHHTTTTTS--SCEECSSHHHHHHTBCSSCEEEEC
T ss_pred CEEEEE-Ch--h---HHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHhcccCCC--ceeccCCHHHHHhhccCCCEEEEe
Confidence 377765 32 2 233334444444 57889888765432222222100000 00 00012233 359999999
Q ss_pred ccccCCccHHHHHHHHHHhcccccccCC-CCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCC
Q 028841 78 FPTRFGMMAAQFKAFLDATGGLWRTQQL-AGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGY 146 (203)
Q Consensus 78 sP~y~~~~~~~~k~~ld~~~~~~~~~~l-~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~ 146 (203)
.|.- ..++..++.+.. .+ +|+ ++...+.. .... ...+.+.+...|..+++.++
T Consensus 76 Vp~~-----~~v~~vl~~l~~-----~L~~g~---iIId~st~--~~~~-t~~~~~~l~~~Gi~fvd~pV 129 (484)
T 4gwg_A 76 VKAG-----QAVDDFIEKLVP-----LLDTGD---IIIDGGNS--EYRD-TTRRCRDLKAKGILFVGSGV 129 (484)
T ss_dssp SCSS-----HHHHHHHHHHGG-----GCCTTC---EEEECSCC--CHHH-HHHHHHHHHHTTCEEEEEEE
T ss_pred cCCh-----HHHHHHHHHHHH-----hcCCCC---EEEEcCCC--CchH-HHHHHHHHHhhccccccCCc
Confidence 9874 356667776642 23 333 22332221 1112 23355667777888877554
No 461
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=20.56 E-value=2.9e+02 Score=21.24 Aligned_cols=38 Identities=13% Similarity=0.085 Sum_probs=25.8
Q ss_pred eEEEEEcCC-cchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 4 KVYIVYYSM-YGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 4 kilii~~S~-~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
.|.++..+. +.....+.+.+.+.+.+ .|+++.+.+..+
T Consensus 63 ~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~ 101 (349)
T 1jye_A 63 LIGVATSSLALHAPSQIVAAILSRADQ-LGASVVVSMVER 101 (349)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHH-TTCEEEEEECCS
T ss_pred EEEEEeCCCCcccHHHHHHHHHHHHHH-cCCEEEEEeCCC
Confidence 455555443 34556788888888888 798888776543
No 462
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=20.52 E-value=1.3e+02 Score=22.47 Aligned_cols=35 Identities=23% Similarity=0.157 Sum_probs=21.9
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
|.|+.+|.|...|--..+++.++ + .|..|.+.+..
T Consensus 3 ~~k~~lVTGas~GIG~aia~~la----~-~G~~V~~~~r~ 37 (264)
T 3tfo_A 3 MDKVILITGASGGIGEGIARELG----V-AGAKILLGARR 37 (264)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHH----H-TTCEEEEEESS
T ss_pred CCCEEEEeCCccHHHHHHHHHHH----H-CCCEEEEEECC
Confidence 35777777765655555555554 4 57788777654
No 463
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=20.48 E-value=98 Score=21.41 Aligned_cols=47 Identities=6% Similarity=-0.005 Sum_probs=29.6
Q ss_pred hhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEec
Q 028841 66 NELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 116 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (203)
..+..+|++|+..-.-...--..++.|++.+... ...+.++.++++-
T Consensus 91 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK 137 (191)
T 3dz8_A 91 AYYRGAMGFILMYDITNEESFNAVQDWATQIKTY----SWDNAQVILVGNK 137 (191)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEEC
T ss_pred HHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEEC
Confidence 4577899999986665433334556666666421 2357787777663
No 464
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=20.47 E-value=1.6e+02 Score=21.53 Aligned_cols=35 Identities=14% Similarity=0.101 Sum_probs=21.0
Q ss_pred ceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCC
Q 028841 3 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 42 (203)
Q Consensus 3 ~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (203)
.|+.+|.+...|--+.+++.++ + .|..|.+.+...
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~----~-~G~~V~~~~r~~ 36 (247)
T 3dii_A 2 NRGVIVTGGGHGIGKQICLDFL----E-AGDKVCFIDIDE 36 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHH----H-TTCEEEEEESCH
T ss_pred CCEEEEECCCCHHHHHHHHHHH----H-CCCEEEEEeCCH
Confidence 4666666665554445555544 4 577888877543
No 465
>1pdo_A Mannose permease; phosphoenolpyruvate dependent phosphotransferase system, phosphotransferase; 1.70A {Escherichia coli} SCOP: c.54.1.1 PDB: 1vrc_A 1vsq_A* 2jzo_A 2jzn_A
Probab=20.46 E-value=2e+02 Score=19.17 Aligned_cols=75 Identities=13% Similarity=0.034 Sum_probs=42.1
Q ss_pred CceEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcCCCC-cHHHhccCCCCCCCCCCCCChhhhhhcCeeEEeccc
Q 028841 2 ATKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETL-PEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 80 (203)
Q Consensus 2 m~kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~~-~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP~ 80 (203)
|.+++|+.++. ..+.+++.+..-+.+ ...++.+++.... +++..++.. ...+.+.+.|.+++-+=.
T Consensus 1 mi~iii~sHG~--~A~gl~~~~~~i~G~--~~~v~ai~~~~~~~~~~~~~~i~---------~~i~~~~~~~gvliLtDl 67 (135)
T 1pdo_A 1 TIAIVIGTHGW--AAEQLLKTAEMLLGE--QENVGWIDFVPGENAETLIEKYN---------AQLAKLDTTKGVLFLVDT 67 (135)
T ss_dssp CCEEEEECSBT--HHHHHHHHHHHHHCC--CSSEEEECBCTTCCHHHHHHHHH---------HHHTTSCCTTCEEEEESS
T ss_pred CceEEEEeChH--HHHHHHHHHHHHcCC--cCCEEEEEeeCCCCHHHHHHHHH---------HHHHhcCCCCCEEEEEEC
Confidence 34777777663 445566666555553 2368888876432 332221100 002234445789999989
Q ss_pred cCCccHHHH
Q 028841 81 RFGMMAAQF 89 (203)
Q Consensus 81 y~~~~~~~~ 89 (203)
|.|++.-..
T Consensus 68 ~GGSp~n~a 76 (135)
T 1pdo_A 68 WGGSPFNAA 76 (135)
T ss_dssp TTSHHHHHH
T ss_pred CCCCHHHHH
Confidence 888876553
No 466
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}
Probab=20.43 E-value=46 Score=28.01 Aligned_cols=47 Identities=9% Similarity=-0.060 Sum_probs=26.1
Q ss_pred HHHHhcccCCCceEEEEEcCCCCcHHHhccCCCCCCCCCCCCChhhhhhcCeeEEecc
Q 028841 22 EIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFP 79 (203)
Q Consensus 22 ~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iiigsP 79 (203)
.|.+.|.+ .|++|.++|..-..... -.+.....+.+..||+||+.|+
T Consensus 377 ~i~~~L~~-~g~~V~~~DP~~~~~~~----------~~~~~~~~~~~~~ad~vvi~t~ 423 (478)
T 3g79_A 377 PYRDLCLK-AGASVMVHDPYVVNYPG----------VEISDNLEEVVRNADAIVVLAG 423 (478)
T ss_dssp HHHHHHHH-HTCEEEEECSSCCCBTT----------BCEESCHHHHHTTCSEEEECSC
T ss_pred HHHHHHHH-CCCEEEEECCCcccccC----------cceecCHHHHHhcCCEEEEecC
Confidence 33444444 47788888764321100 0000111456889999999986
No 467
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=20.42 E-value=85 Score=24.63 Aligned_cols=36 Identities=11% Similarity=0.064 Sum_probs=24.3
Q ss_pred eEEEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 4 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 4 kilii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
||+++.....|+... +..+++.+.+ .|.+|.++...
T Consensus 2 rIl~~~~~~~Gh~~p-~~~la~~L~~-~Gh~V~~~~~~ 37 (384)
T 2p6p_A 2 RILFVAAGSPATVFA-LAPLATAARN-AGHQVVMAANQ 37 (384)
T ss_dssp EEEEECCSSHHHHHH-HHHHHHHHHH-TTCEEEEEECG
T ss_pred EEEEEeCCccchHhH-HHHHHHHHHH-CCCEEEEEeCH
Confidence 898875555666544 4456666766 68899988643
No 468
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=20.41 E-value=1.3e+02 Score=24.02 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=22.7
Q ss_pred hhcCeeEEeccccCCccHHHHHHHHHHhc
Q 028841 69 AEADGFVFGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 69 ~~aD~iiigsP~y~~~~~~~~k~~ld~~~ 97 (203)
..+|++++.+|-|+.--...+..++..+.
T Consensus 125 ~Gadavlv~~P~Y~~~s~~~l~~~f~~VA 153 (343)
T 2v9d_A 125 AGADGIVVINPYYWKVSEANLIRYFEQVA 153 (343)
T ss_dssp HTCSEEEEECCSSSCCCHHHHHHHHHHHH
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHH
Confidence 47899999999998666667777777664
No 469
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=20.39 E-value=1.2e+02 Score=19.95 Aligned_cols=47 Identities=4% Similarity=-0.048 Sum_probs=29.1
Q ss_pred hhhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEe
Q 028841 65 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYS 115 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t 115 (203)
...+..+|++|+....-...-...++.|+..+... ...+.++.++++
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~piilv~n 116 (170)
T 1ek0_A 70 PXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQ----ASKDIIIALVGN 116 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH----SCTTCEEEEEEE
T ss_pred hhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHh----cCCCCcEEEEEE
Confidence 34578899999987665544344556666665321 235677777665
No 470
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=20.38 E-value=62 Score=25.37 Aligned_cols=36 Identities=11% Similarity=0.160 Sum_probs=26.7
Q ss_pred EEEEcCCcchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 6 YIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 6 lii~~S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
+||-+++.|.+..+++.+++.+.+..|..+.+.+-.
T Consensus 21 liVp~~~GG~~D~~aR~la~~l~~~lg~~vvV~N~p 56 (312)
T 2f5x_A 21 MVVPFAAGGPTDNVARSLAESMRPTLGETVVVENKG 56 (312)
T ss_dssp EEESSCTTSHHHHHHHHHHHHHHHHHSSCEEEEECC
T ss_pred EEEeeCCccHHHHHHHHHHHHHHHHhCCCEEEEecC
Confidence 455567889999899988888876446677777653
No 471
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=20.35 E-value=86 Score=21.40 Aligned_cols=45 Identities=9% Similarity=-0.041 Sum_probs=28.5
Q ss_pred hhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEe
Q 028841 67 ELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYS 115 (203)
Q Consensus 67 ~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t 115 (203)
.+..+|++|+....-...-...++.|++.+... ...+.++.++++
T Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~piilv~n 123 (186)
T 2bme_A 79 YYRGAAGALLVYDITSRETYNALTNWLTDARML----ASQNIVIILCGN 123 (186)
T ss_dssp TSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEE
T ss_pred HHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEE
Confidence 467899999987766544444556666655321 125677777766
No 472
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=20.28 E-value=1.3e+02 Score=20.59 Aligned_cols=39 Identities=23% Similarity=0.182 Sum_probs=25.0
Q ss_pred CCceEEEEEcC-CcchHHHHHHHHHHhcccCCCceEEEEEcC
Q 028841 1 MATKVYIVYYS-MYGHVEKLAEEIKKGASSVEGVEAKLWQVP 41 (203)
Q Consensus 1 Mm~kilii~~S-~~g~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (203)
|+.++++|.|. ..|.| .+++.+++.+.. .|.+..++++.
T Consensus 1 M~~~~I~i~G~~GsGKs-T~~~~L~~~l~~-~g~~~~~i~~~ 40 (192)
T 1kht_A 1 MKNKVVVVTGVPGVGST-TSSQLAMDNLRK-EGVNYKMVSFG 40 (192)
T ss_dssp --CCEEEEECCTTSCHH-HHHHHHHHHHHT-TTCCCEEEEHH
T ss_pred CCCeEEEEECCCCCCHH-HHHHHHHHHHHh-cCcceEEEehH
Confidence 54456666665 46776 478888888876 56556677654
No 473
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=20.21 E-value=99 Score=23.71 Aligned_cols=18 Identities=11% Similarity=-0.007 Sum_probs=14.1
Q ss_pred hhhhhcCeeEEeccccCC
Q 028841 66 NELAEADGFVFGFPTRFG 83 (203)
Q Consensus 66 ~~l~~aD~iiigsP~y~~ 83 (203)
+.+.+.|+|++++|....
T Consensus 62 ~ll~~~D~V~i~tp~~~h 79 (308)
T 3uuw_A 62 SLAKKCDCIFLHSSTETH 79 (308)
T ss_dssp HHHTTCSEEEECCCGGGH
T ss_pred HHHhcCCEEEEeCCcHhH
Confidence 345589999999998754
No 474
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=20.18 E-value=1.2e+02 Score=25.91 Aligned_cols=15 Identities=7% Similarity=-0.053 Sum_probs=9.6
Q ss_pred HHHHHHHcCcEEecC
Q 028841 130 AITQLVHHGMIFVPI 144 (203)
Q Consensus 130 l~~~l~~~g~~~v~~ 144 (203)
.++.+...|..+...
T Consensus 168 ~k~ll~~~GVPvp~~ 182 (540)
T 3glk_A 168 STVVAQTLQVPTLPW 182 (540)
T ss_dssp HHHHHHHTTCCBCCB
T ss_pred HHHHHHHcCCCCCCc
Confidence 456667777776653
No 475
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=20.17 E-value=2.1e+02 Score=19.39 Aligned_cols=71 Identities=10% Similarity=0.005 Sum_probs=38.3
Q ss_pred hhhhhhcCeeEEeccccCCccHHHHHHHHHHhcccccccCCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEe
Q 028841 65 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFV 142 (203)
Q Consensus 65 ~~~l~~aD~iiigsP~y~~~~~~~~k~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v 142 (203)
...+..+|++|+..-.-...-...++.|+..+.. ..++++.++++--...... ....++.+.+...++.++
T Consensus 111 ~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~------~~~~piilv~NK~D~~~~~-~~~~~~~~~~~~~~~~~~ 181 (208)
T 3clv_A 111 PLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKI------SSNYIIILVANKIDKNKFQ-VDILEVQKYAQDNNLLFI 181 (208)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHH------HSCCEEEEEEECTTCC-CC-SCHHHHHHHHHHTTCEEE
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHh------hCCCcEEEEEECCCccccc-CCHHHHHHHHHHcCCcEE
Confidence 3456789999998765554434456666666542 2347777776632221111 112334555556665554
No 476
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=20.06 E-value=1.2e+02 Score=24.11 Aligned_cols=42 Identities=21% Similarity=0.108 Sum_probs=30.4
Q ss_pred hhcCeeEEeccccCC-ccHHHHHHHHHHhcccccccC-CCCCceEEEEec
Q 028841 69 AEADGFVFGFPTRFG-MMAAQFKAFLDATGGLWRTQQ-LAGKPAGMFYST 116 (203)
Q Consensus 69 ~~aD~iiigsP~y~~-~~~~~~k~~ld~~~~~~~~~~-l~gK~~~~~~t~ 116 (203)
..+|++++.+|-|+. --...+..++..+. + -.+.|+.++-.-
T Consensus 117 ~Gadavlv~~P~y~~~~s~~~l~~~f~~IA------~aa~~lPiilYn~P 160 (344)
T 2hmc_A 117 VGAKGLMVIPRVLSRGSVIAAQKAHFKAIL------SAAPEIPAVIYNSP 160 (344)
T ss_dssp HTCSEEEECCCCSSSTTCHHHHHHHHHHHH------HHSTTSCEEEEEBG
T ss_pred cCCCEEEECCCccCCCCCHHHHHHHHHHHH------hhCCCCcEEEEecC
Confidence 478999999999987 45566777777764 2 346787777654
No 477
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=20.05 E-value=1.1e+02 Score=24.11 Aligned_cols=29 Identities=10% Similarity=0.006 Sum_probs=22.4
Q ss_pred hhcCeeEEeccccCCccHHHHHHHHHHhc
Q 028841 69 AEADGFVFGFPTRFGMMAAQFKAFLDATG 97 (203)
Q Consensus 69 ~~aD~iiigsP~y~~~~~~~~k~~ld~~~ 97 (203)
..+|++.+.+|-|+.--...+..++..+.
T Consensus 117 ~Gadavlv~~P~y~~~s~~~l~~~f~~va 145 (314)
T 3qze_A 117 GGADACLLVTPYYNKPTQEGMYQHFRHIA 145 (314)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHH
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHH
Confidence 46999999999998655666777777664
No 478
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=20.05 E-value=96 Score=20.67 Aligned_cols=41 Identities=12% Similarity=0.007 Sum_probs=24.2
Q ss_pred CceEEEEEc-CCcchHHHHHHHHHHhcccCCCceEEEEEcCCC
Q 028841 2 ATKVYIVYY-SMYGHVEKLAEEIKKGASSVEGVEAKLWQVPET 43 (203)
Q Consensus 2 m~kilii~~-S~~g~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (203)
+++||+-+. +.+.++...++...+.++. .+.++.++.+.+.
T Consensus 15 ~~~ILv~vD~~~s~~s~~al~~a~~la~~-~~a~l~ll~v~~~ 56 (156)
T 3fg9_A 15 YRRILLTVDEDDNTSSERAFRYATTLAHD-YDVPLGICSVLES 56 (156)
T ss_dssp CC-EEEECCSCCCHHHHHHHHHHHHHHHH-HTCCEEEEEEECC
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHHHh-cCCEEEEEEEEeC
Confidence 467877655 1234456666666555554 4668888887553
Done!