BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028842
         (203 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1DGJ|A Chain A, Crystal Structure Of The Aldehyde Oxidoreductase From
           Desulfovibrio Desulfuricans Atcc 27774
          Length = 907

 Score = 30.4 bits (67), Expect = 0.78,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)

Query: 130 CWTGQFLGHGIFEKRAPA--LLDNLVQALLMAPF 161
           CW   F G+G  E   P+  L+D L + L M PF
Sbjct: 529 CWGAAFRGYGAPESEFPSEVLMDELAEKLGMDPF 562


>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
           From Electron Micrograph
          Length = 340

 Score = 29.3 bits (64), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 3/86 (3%)

Query: 36  ILFSTLMFLHFTPSVCDFSDKVSFLPCGLFGHALVFNLGFLFTLIYASFYYCLDKK---A 92
           I+ + +++L   PSV       +       GH L+  L   F L++  F  C DK+    
Sbjct: 144 IIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVT 203

Query: 93  GSLAALLCFACWVGASLLSNRLGFSL 118
           GS+A  + F+  +G     N  G S+
Sbjct: 204 GSVALAIGFSVAIGHLFAINYTGASM 229


>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
           By Electron Crystallography
          Length = 301

 Score = 29.3 bits (64), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 3/86 (3%)

Query: 36  ILFSTLMFLHFTPSVCDFSDKVSFLPCGLFGHALVFNLGFLFTLIYASFYYCLDKK---A 92
           I+ + +++L   PSV       +       GH L+  L   F L++  F  C DK+    
Sbjct: 105 IIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVT 164

Query: 93  GSLAALLCFACWVGASLLSNRLGFSL 118
           GS+A  + F+  +G     N  G S+
Sbjct: 165 GSVALAIGFSVAIGHLFAINYTGASM 190


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.330    0.143    0.467 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,906,000
Number of Sequences: 62578
Number of extensions: 215540
Number of successful extensions: 499
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 499
Number of HSP's gapped (non-prelim): 8
length of query: 203
length of database: 14,973,337
effective HSP length: 94
effective length of query: 109
effective length of database: 9,091,005
effective search space: 990919545
effective search space used: 990919545
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 49 (23.5 bits)