BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028842
(203 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O13737|YDR2_SCHPO Uncharacterized endoplasmic reticulum membrane protein C16E8.02
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC16E8.02 PE=4 SV=2
Length = 222
Score = 104 bits (259), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 98/185 (52%), Gaps = 20/185 (10%)
Query: 9 LEKHFAFYGAYHSNKINVLIHTLFVWPILFSTLMFLHFTPSVCDFSDKVSFLPCGLFGHA 68
L + ++FY AYHSN +N+ IH + + +L + L+ LH +F+ L
Sbjct: 4 LSRSYSFYAAYHSNPVNIKIHQVCIPLLLLTALVLLH------------NFV-ITLINSK 50
Query: 69 LVFNLGFLFTLIYASFYYCLDKKAGSL-AALLCFACWVGASLLSNRLGFSLAWKVAVAAQ 127
L N+ L L Y FY LD G L + +L ++ S L SL + A
Sbjct: 51 LQINVAHLVGLAYQIFYVTLDPLDGLLYSPVLYLFSYILPSKLFTIFSRSLVNRSAAVVH 110
Query: 128 LICWTGQFLGHGIFEKRAPALLDNLVQALLMAPFFVLLEVLQVFGYEPYPGFHANVEAKI 187
+ICW QF+GHG+FEKR PALLDNL+Q+L +AP F LE P+ G++ +V +KI
Sbjct: 111 VICWILQFIGHGVFEKRKPALLDNLIQSLFIAPLFAFLET------GPFVGYYPSVVSKI 164
Query: 188 RAEIK 192
RA IK
Sbjct: 165 RANIK 169
>sp|P25338|YGB0_YEAST Uncharacterized endoplasmic reticulum membrane protein YGL010W
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=YGL010W PE=1 SV=2
Length = 174
Score = 91.7 bits (226), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 98/201 (48%), Gaps = 27/201 (13%)
Query: 1 MGKSGLLDLEKHFAFYGAYHSNKINVLIHTLFVWPILFSTLMFLHFTPSVCDFSDKVSFL 60
MG+ GLLDL FY YH N NVLIH++FV ILFS LH S
Sbjct: 1 MGE-GLLDLRSQLGFYKFYHHNPKNVLIHSIFVPTILFSGSCMLHRVKIYQSIS------ 53
Query: 61 PCGLFGHALVFNLGFLFTLIYASFYYCLDKKAGSLAALLCFACWVGASLLSNRLGFSLAW 120
L L LF++ Y Y + + +L+ +R+ L +
Sbjct: 54 --------LTAVLSVLFSIFYCLLY------LPTGLLAGVLLLLLNLALIDHRV--DLTF 97
Query: 121 KVAVAAQLICWTGQFLGHGIFEKRAPALLDNLVQALLMAPFFVLLEVLQVFGYEPYPGFH 180
K + I W QF+GHG+FEKR PAL+DNLVQ+L++AP+F++ E L G+ P
Sbjct: 98 KQELGLFTIGWIFQFVGHGVFEKRRPALIDNLVQSLVLAPYFIMFEFLFKLGF--MPRLK 155
Query: 181 ANVEAKIRAEIKEWQDKKQKK 201
A +E + EIK+ + Q++
Sbjct: 156 ATLEHDL--EIKQRNLRMQRQ 174
>sp|Q41963|TIP12_ARATH Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2
Length = 253
Score = 33.9 bits (76), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 67 HALVFNLGFLFTLIYASFYYCLDKKAGSLAALLCFACW--VGASLLSNRL--GFSLAWKV 122
+ALVF + F L+Y + +D K GSL + A VGA++L+ G S+ V
Sbjct: 144 NALVFEIVMTFGLVYTVYATAVDPKNGSLGTIAPIAIGFIVGANILAGGAFSGASMNPAV 203
Query: 123 AVAAQLICWT 132
A ++ WT
Sbjct: 204 AFGPAVVSWT 213
>sp|P25818|TIP11_ARATH Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1
Length = 251
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 67 HALVFNLGFLFTLIYASFYYCLDKKAGSLAALLCFACW--VGASLLSNRL--GFSLAWKV 122
+A VF + F L+Y + +D K GSL + A VGA++L+ G S+ V
Sbjct: 143 NAFVFEIVMTFGLVYTVYATAIDPKNGSLGTIAPIAIGFIVGANILAGGAFSGASMNPAV 202
Query: 123 AVAAQLICWT---------GQFLGHGI 140
A ++ WT G +G GI
Sbjct: 203 AFGPAVVSWTWTNHWVYWAGPLVGGGI 229
>sp|Q8FBI6|TATC_ECOL6 Sec-independent protein translocase protein TatC OS=Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=tatC
PE=3 SV=3
Length = 258
Score = 30.8 bits (68), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 13/97 (13%)
Query: 114 LGFSLAWKVAVAAQLICWTGQFLGHGIFEKRAPALL------------DNLVQALLMAPF 161
+ F ++++V VA L+CW G + +KR L+ D Q LL P
Sbjct: 163 MAFGVSFEVPVAIVLLCWMGITSPEDLRKKRPYVLVGAFVVGMLLTPPDVFSQTLLAIPM 222
Query: 162 FVLLEVLQVFGYEPYPGFHANVEAKIRAEIKEWQDKK 198
+ L E+ VF Y G N E + AE + + ++
Sbjct: 223 YCLFEI-GVFFSRFYVGKGRNREEENDAEAESEKTEE 258
>sp|P69423|TATC_ECOLI Sec-independent protein translocase protein TatC OS=Escherichia
coli (strain K12) GN=tatC PE=1 SV=2
Length = 258
Score = 30.4 bits (67), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 13/97 (13%)
Query: 114 LGFSLAWKVAVAAQLICWTGQFLGHGIFEKRAPALL------------DNLVQALLMAPF 161
+ F ++++V VA L+CW G + +KR L+ D Q LL P
Sbjct: 163 MAFGVSFEVPVAIVLLCWMGITSPEDLRKKRPYVLVGAFVVGMLLTPPDVFSQTLLAIPM 222
Query: 162 FVLLEVLQVFGYEPYPGFHANVEAKIRAEIKEWQDKK 198
+ L E+ VF Y G N E + AE + + ++
Sbjct: 223 YCLFEI-GVFFSRFYVGKGRNREEENDAEAESEKTEE 258
>sp|P69424|TATC_ECO57 Sec-independent protein translocase protein TatC OS=Escherichia
coli O157:H7 GN=tatC PE=3 SV=2
Length = 258
Score = 30.4 bits (67), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 13/97 (13%)
Query: 114 LGFSLAWKVAVAAQLICWTGQFLGHGIFEKRAPALL------------DNLVQALLMAPF 161
+ F ++++V VA L+CW G + +KR L+ D Q LL P
Sbjct: 163 MAFGVSFEVPVAIVLLCWMGITSPEDLRKKRPYVLVGAFVVGMLLTPPDVFSQTLLAIPM 222
Query: 162 FVLLEVLQVFGYEPYPGFHANVEAKIRAEIKEWQDKK 198
+ L E+ VF Y G N E + AE + + ++
Sbjct: 223 YCLFEI-GVFFSRFYVGKGRNREEENDAEAESEKTEE 258
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.330 0.143 0.467
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,702,251
Number of Sequences: 539616
Number of extensions: 2793385
Number of successful extensions: 8353
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 8344
Number of HSP's gapped (non-prelim): 10
length of query: 203
length of database: 191,569,459
effective HSP length: 112
effective length of query: 91
effective length of database: 131,132,467
effective search space: 11933054497
effective search space used: 11933054497
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 58 (26.9 bits)