Query 028842
Match_columns 203
No_of_seqs 113 out of 438
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 03:24:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028842.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028842hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3292 Predicted membrane pro 100.0 1.2E-55 2.6E-60 357.6 14.0 188 1-199 1-188 (196)
2 COG4539 Predicted membrane pro 100.0 3.5E-52 7.5E-57 335.5 11.0 175 7-197 2-176 (180)
3 PF06127 DUF962: Protein of un 100.0 5.4E-32 1.2E-36 203.7 9.7 94 7-171 2-95 (95)
4 COG4323 Predicted membrane pro 97.1 0.00071 1.5E-08 50.6 4.2 40 120-160 52-91 (105)
5 PF08285 DPM3: Dolichol-phosph 80.9 15 0.00032 27.5 7.9 71 121-198 8-88 (91)
6 PRK09848 glucuronide transport 68.0 18 0.0004 32.8 6.8 69 123-195 376-445 (448)
7 PF00283 Cytochrom_B559: Cytoc 53.8 11 0.00023 22.6 1.7 14 26-39 15-28 (29)
8 PRK10429 melibiose:sodium symp 52.8 61 0.0013 29.8 7.5 69 123-195 381-451 (473)
9 COG2211 MelB Na+/melibiose sym 51.1 66 0.0014 30.9 7.5 70 122-196 383-455 (467)
10 TIGR00792 gph sugar (Glycoside 48.5 44 0.00094 29.7 5.6 63 123-187 368-434 (437)
11 COG2245 Predicted membrane pro 45.6 92 0.002 26.2 6.6 29 120-149 99-127 (182)
12 TIGR03161 ribazole_CobZ alpha- 40.0 56 0.0012 26.4 4.4 35 123-159 91-133 (140)
13 PRK06568 F0F1 ATP synthase sub 37.4 64 0.0014 26.3 4.5 49 148-198 3-51 (154)
14 PF15086 UPF0542: Uncharacteri 36.9 73 0.0016 23.1 4.1 20 147-168 21-40 (74)
15 PRK07352 F0F1 ATP synthase sub 36.2 73 0.0016 25.8 4.7 40 158-197 26-65 (174)
16 CHL00019 atpF ATP synthase CF0 34.2 43 0.00094 27.5 3.1 38 159-196 32-69 (184)
17 PRK14399 membrane protein; Pro 32.6 3.6E+02 0.0078 24.0 8.7 47 87-138 129-175 (258)
18 PRK09174 F0F1 ATP synthase sub 31.1 91 0.002 26.4 4.6 59 137-197 38-99 (204)
19 PRK11462 putative transporter; 29.4 2E+02 0.0044 26.5 7.0 40 123-164 375-417 (460)
20 PRK13461 F0F1 ATP synthase sub 27.8 61 0.0013 25.8 2.8 36 160-195 14-49 (159)
21 COG3610 Uncharacterized conser 26.4 3.6E+02 0.0078 22.0 7.9 32 118-152 56-87 (156)
22 COG4578 GutM Glucitol operon a 26.0 75 0.0016 25.4 3.0 20 119-138 7-26 (128)
23 PRK14472 F0F1 ATP synthase sub 25.9 67 0.0014 26.1 2.8 37 160-196 27-63 (175)
24 PRK13460 F0F1 ATP synthase sub 25.8 1.3E+02 0.0028 24.3 4.5 40 158-197 23-62 (173)
25 PF15021 DUF4521: Protein of u 25.7 44 0.00095 28.5 1.7 16 142-157 183-198 (206)
26 PRK05759 F0F1 ATP synthase sub 25.0 1.4E+02 0.003 23.4 4.4 40 157-196 10-49 (156)
27 PRK14473 F0F1 ATP synthase sub 24.9 64 0.0014 25.8 2.5 38 159-196 16-53 (164)
28 PRK13453 F0F1 ATP synthase sub 24.6 1.2E+02 0.0026 24.7 4.1 39 158-196 25-63 (173)
29 PHA02554 13 neck protein; Prov 23.1 38 0.00082 30.8 0.9 25 9-33 37-61 (311)
30 TIGR02976 phageshock_pspB phag 22.8 2.8E+02 0.0062 19.9 5.2 33 155-189 14-46 (75)
31 PRK14471 F0F1 ATP synthase sub 22.1 93 0.002 24.9 2.9 39 159-197 16-54 (164)
32 PRK13454 F0F1 ATP synthase sub 21.7 2E+02 0.0043 23.7 4.9 55 142-196 19-76 (181)
33 PRK08475 F0F1 ATP synthase sub 20.6 87 0.0019 25.4 2.5 39 158-196 29-67 (167)
34 PRK09458 pspB phage shock prot 20.5 2.3E+02 0.0049 20.6 4.3 13 155-167 14-26 (75)
35 PF06667 PspB: Phage shock pro 20.2 3.4E+02 0.0074 19.5 5.4 30 155-186 14-43 (75)
No 1
>KOG3292 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.2e-55 Score=357.60 Aligned_cols=188 Identities=63% Similarity=1.119 Sum_probs=171.0
Q ss_pred CCCCCCCCHHHHHHHHhhhhcCccchhhhhhhhhHHHHHHHHHhhcCCCccccCcccccCccccccccccccHHHHHHHH
Q 028842 1 MGKSGLLDLEKHFAFYGAYHSNKINVLIHTLFVWPILFSTLMFLHFTPSVCDFSDKVSFLPCGLFGHALVFNLGFLFTLI 80 (203)
Q Consensus 1 m~~~~~f~L~~~l~~Y~~yH~N~~N~~IH~v~VP~I~~s~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~i~~~~ 80 (203)
||.. .+|||++++||++||+||+|+.||.+|||+|+||.++++.++.....+ ...+...+|.++++.+.
T Consensus 1 Ms~~-l~dL~k~~aFY~aYHsNPiNIlIH~ifvp~ilfs~l~lLh~l~f~qsl----------tl~~vLr~nv~~~~~v~ 69 (196)
T KOG3292|consen 1 MSEG-LLDLEKHFAFYGAYHSNPINILIHSIFVPPILFSGLLLLHSLGFYQSL----------TLDGVLRINVGFLVSVL 69 (196)
T ss_pred CCch-hhhHHHhhhHHHHhccCCceEEEEeeehhHHHHHHHHHHHhcCceEEE----------EeeeEEEeehHHHHHHH
Confidence 5544 789999999999999999999999999999999999999988763221 11234678999999999
Q ss_pred HHHHHHhhchhhhHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHhhhccccCCCCcchhhHHHHHHHHH
Q 028842 81 YASFYYCLDKKAGSLAALLCFACWVGASLLSNRLGFSLAWKVAVAAQLICWTGQFLGHGIFEKRAPALLDNLVQALLMAP 160 (203)
Q Consensus 81 ~~~yY~~Ld~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~~~~al~v~vv~Wi~QFiGH~vfEgrkPalldnl~q~l~igP 160 (203)
|++||+.||++-|++.+.++..||.....++.+.+.+...+++++.+++||++||+|||+|||||||++||++|++++||
T Consensus 70 yaiFYi~Ld~~sGlla~vl~l~~~i~~s~l~~r~~~sl~~k~g~~s~licWi~QFvGHGvFEKR~PALlDNLlQsl~maP 149 (196)
T KOG3292|consen 70 YAIFYILLDKKSGLLAAVLCLSCWIGSSFLAHRLGLSLKLKVGLASQLICWIGQFVGHGVFEKRAPALLDNLLQSLLMAP 149 (196)
T ss_pred HHHHheeecccccHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHhH
Confidence 99999999999998888888889999999988877566778899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCccchHHHHHHHHHHHHHHHHhhc
Q 028842 161 FFVLLEVLQVFGYEPYPGFHANVEAKIRAEIKEWQDKKQ 199 (203)
Q Consensus 161 lfV~~e~lf~lG~~p~~~l~~~v~~~i~~~i~~~~~~~~ 199 (203)
+|++.|+++.+||+|||.+++|++.+++..++++|++|+
T Consensus 150 ~Fv~lE~l~~~Gy~P~~~~kar~n~kle~~~kn~r~~k~ 188 (196)
T KOG3292|consen 150 FFVLLEVLSVFGYEPYPGFKARVNHKLESKIKNYRMKKE 188 (196)
T ss_pred HHHHHHHHHHccCCcCcchhheehhhHhHHHhhHHhhhh
Confidence 999999999999999999999999999999999998883
No 2
>COG4539 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=3.5e-52 Score=335.48 Aligned_cols=175 Identities=35% Similarity=0.541 Sum_probs=150.0
Q ss_pred CCHHHHHHHHhhhhcCccchhhhhhhhhHHHHHHHHHhhcCCCccccCcccccCccccccccccccHHHHHHHHHHHHHH
Q 028842 7 LDLEKHFAFYGAYHSNKINVLIHTLFVWPILFSTLMFLHFTPSVCDFSDKVSFLPCGLFGHALVFNLGFLFTLIYASFYY 86 (203)
Q Consensus 7 f~L~~~l~~Y~~yH~N~~N~~IH~v~VP~I~~s~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~i~~~~~~~yY~ 86 (203)
.||.|+++||++||+||+|+.||.||||+|++|..+++++.-. .+ .++...+|.|.++.+++.+||+
T Consensus 2 ~~Ls~~lsfYaaYH~nprNI~iH~i~IP~ills~avllhr~vi--~l-----------~~~~l~is~a~ll~va~~iFYl 68 (180)
T COG4539 2 LDLSDHLSFYAAYHHNPRNILIHFIGIPTILLSGAVLLHRPVI--GL-----------SNSKLQISPALLLSVAFSIFYL 68 (180)
T ss_pred ccHHHHHHHHHHHhcCCcceeeeeecchHHHHHHHHHhhccee--ee-----------cCCcceecHHHHHHHHHHHHhe
Confidence 4899999999999999999999999999999999999997543 11 1245779999999999999999
Q ss_pred hhchhhhHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHhhhccccCCCCcchhhHHHHHHHHHHHHHHH
Q 028842 87 CLDKKAGSLAALLCFACWVGASLLSNRLGFSLAWKVAVAAQLICWTGQFLGHGIFEKRAPALLDNLVQALLMAPFFVLLE 166 (203)
Q Consensus 87 ~Ld~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~~~~al~v~vv~Wi~QFiGH~vfEgrkPalldnl~q~l~igPlfV~~e 166 (203)
+||++.|++|++++....+....++.... ....+..+++|++|||.||+||||||||||||+||+.|++++||+|++.|
T Consensus 69 ~Ldl~~Gll~~~ll~l~~wi~~~l~a~~t-~a~l~~~lglfvIgWI~QFVGHgvfEkRkPAlvDnL~qsLviaPlF~l~E 147 (180)
T COG4539 69 RLDLPFGLLMGVLLLLLVWILLALAAHRT-DAWLKQGLGLFVIGWIFQFVGHGVFEKRKPALVDNLVQSLVIAPLFILAE 147 (180)
T ss_pred eeccchhHHHHHHHHHHHHHHHHHHHhhH-HHHHhcCceeeeehHHHHhccccccccCCchHHHHHHhhHHHHHHHHHHH
Confidence 99999999999998875555555554322 23346789999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCccchHHHHHHHHHHHHHHHHh
Q 028842 167 VLQVFGYEPYPGFHANVEAKIRAEIKEWQDK 197 (203)
Q Consensus 167 ~lf~lG~~p~~~l~~~v~~~i~~~i~~~~~~ 197 (203)
.+|++||| |+++++++.+++.+...-|-+
T Consensus 148 t~f~lG~~--p~l~~ev~~~~~~k~~~~~~k 176 (180)
T COG4539 148 TLFKLGLR--PRLKAEVEHRAEIKQRNLRMK 176 (180)
T ss_pred HHHHhccc--HHHHHHHHHhcchhhhccccc
Confidence 99999999 899999999887664444333
No 3
>PF06127 DUF962: Protein of unknown function (DUF962); InterPro: IPR009305 This family consists of several eukaryotic and prokaryotic proteins of unknown function. The yeast protein P25338 from SWISSPROT has been found to be non-essential for cell growth.
Probab=99.97 E-value=5.4e-32 Score=203.74 Aligned_cols=94 Identities=47% Similarity=0.759 Sum_probs=85.4
Q ss_pred CCHHHHHHHHhhhhcCccchhhhhhhhhHHHHHHHHHhhcCCCccccCcccccCccccccccccccHHHHHHHHHHHHHH
Q 028842 7 LDLEKHFAFYGAYHSNKINVLIHTLFVWPILFSTLMFLHFTPSVCDFSDKVSFLPCGLFGHALVFNLGFLFTLIYASFYY 86 (203)
Q Consensus 7 f~L~~~l~~Y~~yH~N~~N~~IH~v~VP~I~~s~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~i~~~~~~~yY~ 86 (203)
.|++||+++|++|||||+|+++|++|+|+|++|++.++...+
T Consensus 2 ~~~~~~~~~Y~~~H~~~~n~~lH~igvp~~~~~~~~~~~~~~-------------------------------------- 43 (95)
T PF06127_consen 2 KSLEEFFAFYLSYHRNPINRALHFIGVPLIIFSLLLLLARIP-------------------------------------- 43 (95)
T ss_pred cCHHHHHHHHHHHcCCHhhHHHHHHHHHHHHHHHHHHHHHcc--------------------------------------
Confidence 489999999999999999999999999999999887654310
Q ss_pred hhchhhhHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHhhhccccCCCCcchhhHHHHHHHHHHHHHHH
Q 028842 87 CLDKKAGSLAALLCFACWVGASLLSNRLGFSLAWKVAVAAQLICWTGQFLGHGIFEKRAPALLDNLVQALLMAPFFVLLE 166 (203)
Q Consensus 87 ~Ld~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~~~~al~v~vv~Wi~QFiGH~vfEgrkPalldnl~q~l~igPlfV~~e 166 (203)
|+.+++++++||++|++||++|||||||++||++|+++++|+|++.|
T Consensus 44 ---------------------------------~~~~l~~~~~g~~~q~~GH~~~E~~~Pa~~~~p~~sl~~~p~~~~~~ 90 (95)
T PF06127_consen 44 ---------------------------------WWLALAVFVVGWGLQFIGHFFFEKNKPAFFDNPLQSLLIDPFFVWLE 90 (95)
T ss_pred ---------------------------------HHHHHHHHHHHHHHHHHhHHHHHcCCCcchhchHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999889999999999999
Q ss_pred HHHHc
Q 028842 167 VLQVF 171 (203)
Q Consensus 167 ~lf~l 171 (203)
+++++
T Consensus 91 l~~~~ 95 (95)
T PF06127_consen 91 LLFRL 95 (95)
T ss_pred HhccC
Confidence 99875
No 4
>COG4323 Predicted membrane protein [Function unknown]
Probab=97.11 E-value=0.00071 Score=50.63 Aligned_cols=40 Identities=35% Similarity=0.573 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCcchhhHHHHHHHHH
Q 028842 120 WKVAVAAQLICWTGQFLGHGIFEKRAPALLDNLVQALLMAP 160 (203)
Q Consensus 120 ~~~al~v~vv~Wi~QFiGH~vfEgrkPalldnl~q~l~igP 160 (203)
|.+-++.=++|..+-.+||-+|||.+||-++..+-+ ++|-
T Consensus 52 w~wllAapv~GYgFAWvGHFvFEKNRPATFkyPvyS-lMGD 91 (105)
T COG4323 52 WRWLLAAPVIGYGFAWVGHFVFEKNRPATFKYPVYS-LMGD 91 (105)
T ss_pred hHHHHHhhhhcccceeeeeeeeecCCCccccccHHH-hhcc
Confidence 444455566677777789999999999999987665 4543
No 5
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=80.86 E-value=15 Score=27.52 Aligned_cols=71 Identities=20% Similarity=0.346 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCc-chhhHHHHHHHHHHHHHHH----HHHHcCCC-----CCccchHHHHHHHHHH
Q 028842 121 KVAVAAQLICWTGQFLGHGIFEKRAPA-LLDNLVQALLMAPFFVLLE----VLQVFGYE-----PYPGFHANVEAKIRAE 190 (203)
Q Consensus 121 ~~al~v~vv~Wi~QFiGH~vfEgrkPa-lldnl~q~l~igPlfV~~e----~lf~lG~~-----p~~~l~~~v~~~i~~~ 190 (203)
...+.++..-|+.-..|=- + -|. .-+ +.+...|+|.+.- .++.+||+ =.||=++|++++|++.
T Consensus 8 l~~~~~l~~~w~~l~~~~~--~--~~~~~~~---~ii~~lP~~~Lv~fG~Ysl~~lgy~v~tFnDcpeA~~eL~~eI~eA 80 (91)
T PF08285_consen 8 LSALLLLSALWLALLLGLL--P--LPPEPQQ---EIIPYLPFYALVSFGCYSLFTLGYGVATFNDCPEAAKELQKEIKEA 80 (91)
T ss_pred HHHHHHHHHHHHHHHHccC--C--CCchhHH---HHHHHhhHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHH
Confidence 3345666667877666542 3 222 223 3355679887643 47788888 4468899999999988
Q ss_pred HHHHHHhh
Q 028842 191 IKEWQDKK 198 (203)
Q Consensus 191 i~~~~~~~ 198 (203)
.++.|+|.
T Consensus 81 K~dLr~kG 88 (91)
T PF08285_consen 81 KADLRKKG 88 (91)
T ss_pred HHHHHHcC
Confidence 88888764
No 6
>PRK09848 glucuronide transporter; Provisional
Probab=68.01 E-value=18 Score=32.77 Aligned_cols=69 Identities=13% Similarity=0.204 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHhhhccccCCCCcchhhHHHHHHHHHHHHHHHH-HHHcCCCCCccchHHHHHHHHHHHHHHH
Q 028842 123 AVAAQLICWTGQFLGHGIFEKRAPALLDNLVQALLMAPFFVLLEV-LQVFGYEPYPGFHANVEAKIRAEIKEWQ 195 (203)
Q Consensus 123 al~v~vv~Wi~QFiGH~vfEgrkPalldnl~q~l~igPlfV~~e~-lf~lG~~p~~~l~~~v~~~i~~~i~~~~ 195 (203)
+++..+.+++++..|..-=+...|+..+.+.-.....|.-...=. +....|+ +.|+-.+++++++++.|
T Consensus 376 aig~~i~g~~l~~~G~~~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~y~----l~~~~~~~~~~~l~~~~ 445 (448)
T PRK09848 376 AIGGSIPAFILGLSGYIANQVQTPEVIMGIRTSIALVPCGFMLLAFVIIWFYP----LTDKKFKEIVVEIDNRK 445 (448)
T ss_pred HHHHHHHHHHHHHcCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHee----CCHHHHHHHHHHHHHhh
Confidence 667788899999998752122245555665333336676544332 2223454 44555556666665544
No 7
>PF00283 Cytochrom_B559: Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits; InterPro: IPR013081 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. Cytochrome b559, which forms part of the reaction centre core of PSII is a heterodimer composed of one alpha subunit (PsbE), one beta (PsbF) subunit, and a haem cofactor. Two histidine residues from each subunit coordinate the haem. Although cytochrome b559 is a redox-active protein, it is unlikely to be involved in the primary electron transport in PSII due to its very slow photo-oxidation and photo-reduction kinetics. Instead, cytochrome b559 could participate in a secondary electron transport pathway that helps protect PSII from photo-damage. Cytochrome b559 is essential for PSII assembly []. This domain occurs in both the alpha and beta subunits of cytochrome B559. In the alpha sbunit it occurs together with a lumenal domain (IPR013082 from INTERPRO), while in the beta subunit it occurs on its own.; GO: 0046872 metal ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009536 plastid, 0009579 thylakoid, 0016021 integral to membrane; PDB: 3ARC_f 3A0H_f 3A0B_f 1W5C_K 1S5L_e 3BZ2_E 3PRQ_E 1IZL_P 2AXT_E 4FBY_R ....
Probab=53.82 E-value=11 Score=22.61 Aligned_cols=14 Identities=29% Similarity=0.401 Sum_probs=12.3
Q ss_pred hhhhhhhhhHHHHH
Q 028842 26 VLIHTLFVWPILFS 39 (203)
Q Consensus 26 ~~IH~v~VP~I~~s 39 (203)
-+||.+.||.+++.
T Consensus 15 ~~IH~l~iPtvf~~ 28 (29)
T PF00283_consen 15 WAIHALTIPTVFFL 28 (29)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eeeeecccceEEec
Confidence 47999999999885
No 8
>PRK10429 melibiose:sodium symporter; Provisional
Probab=52.83 E-value=61 Score=29.85 Aligned_cols=69 Identities=14% Similarity=0.110 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhhhccccCCCCcchhhHHHHHHHHHHHHHHHH--HHHcCCCCCccchHHHHHHHHHHHHHHH
Q 028842 123 AVAAQLICWTGQFLGHGIFEKRAPALLDNLVQALLMAPFFVLLEV--LQVFGYEPYPGFHANVEAKIRAEIKEWQ 195 (203)
Q Consensus 123 al~v~vv~Wi~QFiGH~vfEgrkPalldnl~q~l~igPlfV~~e~--lf~lG~~p~~~l~~~v~~~i~~~i~~~~ 195 (203)
+++..+.+|+++..|=.-=+...|+-++.+.-.....|.-.+.=. +....|+ |.++-.+++.+++++-|
T Consensus 381 al~~~i~g~~l~~~Gy~~~~~q~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~y~----l~~~~~~~i~~~l~~~~ 451 (473)
T PRK10429 381 AFAAFFIGVVLGLIGYVPNVEQSAQTLLGMQFIMIGLPTLFFMITLVLYFRYYR----LNGDFLRRIQIHLLDKY 451 (473)
T ss_pred HHHHHHHHHHHHHcCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhee----CCHHHHHHHHHHHHHHH
Confidence 677889999999988421122234455665445556786654332 2224564 43444555555554444
No 9
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=51.07 E-value=66 Score=30.87 Aligned_cols=70 Identities=14% Similarity=0.219 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHhhhccccCC---CCcchhhHHHHHHHHHHHHHHHHHHHcCCCCCccchHHHHHHHHHHHHHHHH
Q 028842 122 VAVAAQLICWTGQFLGHGIFEKR---APALLDNLVQALLMAPFFVLLEVLQVFGYEPYPGFHANVEAKIRAEIKEWQD 196 (203)
Q Consensus 122 ~al~v~vv~Wi~QFiGH~vfEgr---kPalldnl~q~l~igPlfV~~e~lf~lG~~p~~~l~~~v~~~i~~~i~~~~~ 196 (203)
.+++.++.+|++..+|=. +.. .|+=+.-+.....+.|.....-.+-..++. .|.++-.++|.+|+++-|+
T Consensus 383 ~ala~~~~g~~L~~~Gyv--~~~~~Q~~~al~gI~~~~~~~Pa~l~l~~~i~~~~y---~L~~~~~~~I~~eL~~r~~ 455 (467)
T COG2211 383 LALAGFIPGWILGAIGYV--PNVSAQSASALFGIRFLFIILPALLLLLAAIIIFFY---KLNEKMHKEIIEELEQRKA 455 (467)
T ss_pred HHHHHHHHHHHHHHcCCC--CCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHHhc
Confidence 488999999999999974 444 345556666666777877776665555543 3555555666555555443
No 10
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=48.50 E-value=44 Score=29.68 Aligned_cols=63 Identities=21% Similarity=0.296 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhhhccccC--CCCcchhhHHHHHHHHHH-HHHHHHHHHc-CCCCCccchHHHHHHH
Q 028842 123 AVAAQLICWTGQFLGHGIFEK--RAPALLDNLVQALLMAPF-FVLLEVLQVF-GYEPYPGFHANVEAKI 187 (203)
Q Consensus 123 al~v~vv~Wi~QFiGH~vfEg--rkPalldnl~q~l~igPl-fV~~e~lf~l-G~~p~~~l~~~v~~~i 187 (203)
+++..+.+|+.+..|.. ++ ..|+-.+.+.-.+.+.|. +...-+.... .|+..+|-++++++++
T Consensus 368 ~lg~~i~g~ll~~~G~~--~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~y~l~~~~~~~i~~~l 434 (437)
T TIGR00792 368 ALAGFLVGLILGIIGYV--ANAAQSPITLNGIKILMFAVPALFLLLAAIIIGRFYKLTEKKHAEIVEEL 434 (437)
T ss_pred HHHHHHHHHHHHHcCCC--cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHeeCcHHHHHHHHHHH
Confidence 57778899999988753 33 234444554334566673 3334444443 6752233333343333
No 11
>COG2245 Predicted membrane protein [Function unknown]
Probab=45.59 E-value=92 Score=26.24 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCcch
Q 028842 120 WKVAVAAQLICWTGQFLGHGIFEKRAPALL 149 (203)
Q Consensus 120 ~~~al~v~vv~Wi~QFiGH~vfEgrkPall 149 (203)
....++-|+..|++|.+|- |||||.=..+
T Consensus 99 l~~~Lag~Vi~wIl~Iisa-yf~kkaleal 127 (182)
T COG2245 99 LGSFLAGFVILWILYIISA-YFQKKALEAL 127 (182)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3456788999999999999 5898876544
No 12
>TIGR03161 ribazole_CobZ alpha-ribazole phosphatase CobZ. Sequences in the seed alignment were the experimentally characterized CobZ of the methanogenic archaeon Methanosarcina mazei, and other archaeal proteins found similarly next to or very near to other cobalamin biosynthesis genes. CobZ replaces the alpha-ribazole-phosphate phosphatase (EC 3.1.3.73) called CobC in analogous bacterial pathways for cobalamin biosynthesis under anaerobic conditions.
Probab=40.05 E-value=56 Score=26.43 Aligned_cols=35 Identities=26% Similarity=0.476 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHh-hhccccCCCCc-------chhhHHHHHHHH
Q 028842 123 AVAAQLICWTGQFL-GHGIFEKRAPA-------LLDNLVQALLMA 159 (203)
Q Consensus 123 al~v~vv~Wi~QFi-GH~vfEgrkPa-------lldnl~q~l~ig 159 (203)
+++..+.+|++-|. | +|.+.||. |+||++.+++.|
T Consensus 91 ~ia~~~~g~i~~f~~~--~~D~~KPgii~~lg~flDDivaai~A~ 133 (140)
T TIGR03161 91 ALAEYIGGFKALFNFK--RYDKKKPGILAELPPFLDDVVGGLIAG 133 (140)
T ss_pred HHHHHHHHHHHHHHHH--HhhccCccccCcccccHHHHHHHHHHH
Confidence 34455667777665 6 58999997 889998775543
No 13
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=37.42 E-value=64 Score=26.31 Aligned_cols=49 Identities=10% Similarity=0.100 Sum_probs=29.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHcCCCCCccchHHHHHHHHHHHHHHHHhh
Q 028842 148 LLDNLVQALLMAPFFVLLEVLQVFGYEPYPGFHANVEAKIRAEIKEWQDKK 198 (203)
Q Consensus 148 lldnl~q~l~igPlfV~~e~lf~lG~~p~~~l~~~v~~~i~~~i~~~~~~~ 198 (203)
|+|+.+- .+.=|.+++-+|.+++|+|--..=++=+++|+.++.+-.+.|
T Consensus 3 ~~~~~fw--q~I~FlIll~ll~kfawkPI~~~LeeR~~~I~~~Ld~Ae~~r 51 (154)
T PRK06568 3 FLDESFW--LAVSFVIFVYLIYRPAKKAILNSLDAKILEVQEKVLKAEKLK 51 (154)
T ss_pred chHhHHH--HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566532 344567777779999998644444444555555555544433
No 14
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=36.90 E-value=73 Score=23.10 Aligned_cols=20 Identities=30% Similarity=0.751 Sum_probs=13.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHH
Q 028842 147 ALLDNLVQALLMAPFFVLLEVL 168 (203)
Q Consensus 147 alldnl~q~l~igPlfV~~e~l 168 (203)
.|+..+ .+.+.|+|+..-+|
T Consensus 21 ~Fl~~v--ll~LtPlfiisa~l 40 (74)
T PF15086_consen 21 EFLTTV--LLILTPLFIISAVL 40 (74)
T ss_pred HHHHHH--HHHHhHHHHHHHHH
Confidence 445554 35678999988664
No 15
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=36.21 E-value=73 Score=25.84 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHcCCCCCccchHHHHHHHHHHHHHHHHh
Q 028842 158 MAPFFVLLEVLQVFGYEPYPGFHANVEAKIRAEIKEWQDK 197 (203)
Q Consensus 158 igPlfV~~e~lf~lG~~p~~~l~~~v~~~i~~~i~~~~~~ 197 (203)
+.=+.+++-+|.++.|+|..+.=++=+++|...+.+-++.
T Consensus 26 iinflIl~~lL~~fl~kpI~~~l~~R~~~I~~~l~~A~~~ 65 (174)
T PRK07352 26 LINLAIVIGLLYYFGRGFLGKILEERREAILQALKEAEER 65 (174)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778888999864443333344455555554433
No 16
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=34.18 E-value=43 Score=27.48 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHcCCCCCccchHHHHHHHHHHHHHHHH
Q 028842 159 APFFVLLEVLQVFGYEPYPGFHANVEAKIRAEIKEWQD 196 (203)
Q Consensus 159 gPlfV~~e~lf~lG~~p~~~l~~~v~~~i~~~i~~~~~ 196 (203)
.=+.+++-+|++++|+|..+.=++=++.|..++.+-.+
T Consensus 32 Inflill~lL~~fl~kPI~~~l~~R~~~I~~~l~~Ae~ 69 (184)
T CHL00019 32 INLSVVLGVLIYFGKGVLSDLLDNRKQTILNTIRNSEE 69 (184)
T ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788889999997555444444555555554443
No 17
>PRK14399 membrane protein; Provisional
Probab=32.59 E-value=3.6e+02 Score=23.99 Aligned_cols=47 Identities=15% Similarity=0.096 Sum_probs=25.5
Q ss_pred hhchhhhHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHhhh
Q 028842 87 CLDKKAGSLAALLCFACWVGASLLSNRLGFSLAWKVAVAAQLICWTGQFLGH 138 (203)
Q Consensus 87 ~Ld~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~~~~al~v~vv~Wi~QFiGH 138 (203)
.+||..++......+......+++... ....++..-+.+|+=|.+|=
T Consensus 129 ~l~p~~~li~~~if~i~~~itryvSL~-----Si~a~~~~~i~~~ip~~~~~ 175 (258)
T PRK14399 129 VVNYLYLIIFLIVWFISVAISRKVSVA-----SIFSAATILLIMWIPYLYGV 175 (258)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhHH-----HHHHHHHHHHHHHHHHhccc
Confidence 366777777766655555556654332 11123344455677765553
No 18
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=31.08 E-value=91 Score=26.39 Aligned_cols=59 Identities=14% Similarity=0.126 Sum_probs=30.8
Q ss_pred hhccccCCCCcchhh--HHHHHH-HHHHHHHHHHHHHcCCCCCccchHHHHHHHHHHHHHHHHh
Q 028842 137 GHGIFEKRAPALLDN--LVQALL-MAPFFVLLEVLQVFGYEPYPGFHANVEAKIRAEIKEWQDK 197 (203)
Q Consensus 137 GH~vfEgrkPalldn--l~q~l~-igPlfV~~e~lf~lG~~p~~~l~~~v~~~i~~~i~~~~~~ 197 (203)
||+ +|--|.|=.+ ..|.+. +.=|.+++-++.++-|+|..+.=++=+++|..++.+-++.
T Consensus 38 ~~~--~~~~p~~~~~~~~~~l~w~~I~FliL~~lL~k~~~~pI~~vLe~R~~~I~~~L~~Ae~~ 99 (204)
T PRK09174 38 EHG--SGVFPPFDSTHYASQLLWLAITFGLFYLFMSRVILPRIGGIIETRRDRIAQDLDQAARL 99 (204)
T ss_pred ccc--cCCCCCCcchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 454 5557877332 113222 2345566666778888765444444445555555554433
No 19
>PRK11462 putative transporter; Provisional
Probab=29.39 E-value=2e+02 Score=26.53 Aligned_cols=40 Identities=18% Similarity=0.338 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhhhccccC---CCCcchhhHHHHHHHHHHHHH
Q 028842 123 AVAAQLICWTGQFLGHGIFEK---RAPALLDNLVQALLMAPFFVL 164 (203)
Q Consensus 123 al~v~vv~Wi~QFiGH~vfEg---rkPalldnl~q~l~igPlfV~ 164 (203)
+++..+.+|+++..|=. ++ ..|+-++.+.-.....|....
T Consensus 375 alg~~i~g~iL~~~Gy~--~~~~~q~~~~~~~i~~~~~~~P~~~~ 417 (460)
T PRK11462 375 AFGGALIGWMLAYGGYD--AAEKAQNSATISIIIALFTIVPAICY 417 (460)
T ss_pred HHHHHHHHHHHHHcCCC--CCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 67888899999987542 22 223444444334455676543
No 20
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=27.80 E-value=61 Score=25.81 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHcCCCCCccchHHHHHHHHHHHHHHH
Q 028842 160 PFFVLLEVLQVFGYEPYPGFHANVEAKIRAEIKEWQ 195 (203)
Q Consensus 160 PlfV~~e~lf~lG~~p~~~l~~~v~~~i~~~i~~~~ 195 (203)
=|.+++-+|.++.|+|..+.=++=++.|...+.+-+
T Consensus 14 nF~il~~iL~~f~~kpi~~~l~~R~~~I~~~l~~A~ 49 (159)
T PRK13461 14 NFIILLLILKHFFFDKIKAVIDSRQSEIDNKIEKAD 49 (159)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677778889998755554444555555555543
No 21
>COG3610 Uncharacterized conserved protein [Function unknown]
Probab=26.39 E-value=3.6e+02 Score=22.00 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhccccCCCCcchhhH
Q 028842 118 LAWKVAVAAQLICWTGQFLGHGIFEKRAPALLDNL 152 (203)
Q Consensus 118 ~~~~~al~v~vv~Wi~QFiGH~vfEgrkPalldnl 152 (203)
..+..+++-++++-+.+.++|. .|+|+..-.+
T Consensus 56 ~~~atfiaa~~vg~lg~~~sr~---~k~p~~v~~v 87 (156)
T COG3610 56 IVVATFIAAFVVGCLGNLLSRR---YKTPAKVFTV 87 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---hcCChhhhec
Confidence 4445556666666666666664 3566665444
No 22
>COG4578 GutM Glucitol operon activator [Transcription]
Probab=25.99 E-value=75 Score=25.37 Aligned_cols=20 Identities=25% Similarity=0.569 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 028842 119 AWKVAVAAQLICWTGQFLGH 138 (203)
Q Consensus 119 ~~~~al~v~vv~Wi~QFiGH 138 (203)
.|..-+++.+++|.+|+.+-
T Consensus 7 ~~~~lI~~~vi~w~~q~alg 26 (128)
T COG4578 7 MWPALIALAVIAWCAQLALG 26 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566788999999999854
No 23
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=25.88 E-value=67 Score=26.10 Aligned_cols=37 Identities=19% Similarity=0.331 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHcCCCCCccchHHHHHHHHHHHHHHHH
Q 028842 160 PFFVLLEVLQVFGYEPYPGFHANVEAKIRAEIKEWQD 196 (203)
Q Consensus 160 PlfV~~e~lf~lG~~p~~~l~~~v~~~i~~~i~~~~~ 196 (203)
=|.+++-+|.+++|+|..+.-++=+++|...+.+-.+
T Consensus 27 ~Flil~~lL~~~l~kpi~~~l~~R~~~I~~~l~~Ae~ 63 (175)
T PRK14472 27 TFVIVLLILKKIAWGPILSALEEREKGIQSSIDRAHS 63 (175)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677788899987655544445555555555443
No 24
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=25.84 E-value=1.3e+02 Score=24.34 Aligned_cols=40 Identities=15% Similarity=0.305 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHcCCCCCccchHHHHHHHHHHHHHHHHh
Q 028842 158 MAPFFVLLEVLQVFGYEPYPGFHANVEAKIRAEIKEWQDK 197 (203)
Q Consensus 158 igPlfV~~e~lf~lG~~p~~~l~~~v~~~i~~~i~~~~~~ 197 (203)
+.=|.+++-+|+++.|+|..+.=++=+++|..++.+-++.
T Consensus 23 ~i~Flil~~iL~~~~~kpi~~~l~~R~~~I~~~l~~Ae~~ 62 (173)
T PRK13460 23 LVTFLVVVLVLKKFAWDVILKALDERASGVQNDINKASEL 62 (173)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777888999875555444455555555554443
No 25
>PF15021 DUF4521: Protein of unknown function (DUF4521)
Probab=25.75 E-value=44 Score=28.53 Aligned_cols=16 Identities=38% Similarity=0.652 Sum_probs=13.6
Q ss_pred cCCCCcchhhHHHHHH
Q 028842 142 EKRAPALLDNLVQALL 157 (203)
Q Consensus 142 EgrkPalldnl~q~l~ 157 (203)
||+.|.|.+|++++|+
T Consensus 183 ek~tPGLS~dvi~FLl 198 (206)
T PF15021_consen 183 EKPTPGLSKDVIRFLL 198 (206)
T ss_pred cCCCCCccHHHHHHHH
Confidence 6788999999999764
No 26
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=25.04 E-value=1.4e+02 Score=23.41 Aligned_cols=40 Identities=15% Similarity=0.226 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCccchHHHHHHHHHHHHHHHH
Q 028842 157 LMAPFFVLLEVLQVFGYEPYPGFHANVEAKIRAEIKEWQD 196 (203)
Q Consensus 157 ~igPlfV~~e~lf~lG~~p~~~l~~~v~~~i~~~i~~~~~ 196 (203)
.+.=|.+++-+|.++.|+|..+.=++=++.|..++.+-++
T Consensus 10 ~~i~Flil~~il~~~~~~pi~~~l~~R~~~I~~~l~~a~~ 49 (156)
T PRK05759 10 QLIAFLILVWFIMKFVWPPIMKALEERQKKIADGLAAAER 49 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446677777888999987655544445555555555443
No 27
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=24.92 E-value=64 Score=25.83 Aligned_cols=38 Identities=18% Similarity=0.412 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHcCCCCCccchHHHHHHHHHHHHHHHH
Q 028842 159 APFFVLLEVLQVFGYEPYPGFHANVEAKIRAEIKEWQD 196 (203)
Q Consensus 159 gPlfV~~e~lf~lG~~p~~~l~~~v~~~i~~~i~~~~~ 196 (203)
.=|.|++-+|.++.|+|..+.=++=++.|..++.+-.+
T Consensus 16 inflil~~lL~~fl~kpi~~~l~~R~~~I~~~l~~Ae~ 53 (164)
T PRK14473 16 INFLLLIFLLRTFLYRPVLNLLNERTRRIEESLRDAEK 53 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667778888999987555444445555555555443
No 28
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=24.58 E-value=1.2e+02 Score=24.66 Aligned_cols=39 Identities=26% Similarity=0.486 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHcCCCCCccchHHHHHHHHHHHHHHHH
Q 028842 158 MAPFFVLLEVLQVFGYEPYPGFHANVEAKIRAEIKEWQD 196 (203)
Q Consensus 158 igPlfV~~e~lf~lG~~p~~~l~~~v~~~i~~~i~~~~~ 196 (203)
+.=|.+++-+|.++.|+|..+.-++=++.|...+.+-++
T Consensus 25 iInFliL~~lL~~~l~~pi~~~l~~R~~~I~~~l~~Ae~ 63 (173)
T PRK13453 25 VLTFIVLLALLKKFAWGPLKDVMDKRERDINRDIDDAEQ 63 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777888899987665555555555555555444
No 29
>PHA02554 13 neck protein; Provisional
Probab=23.07 E-value=38 Score=30.82 Aligned_cols=25 Identities=24% Similarity=0.510 Sum_probs=20.1
Q ss_pred HHHHHHHHhhhhcCccchhhhhhhh
Q 028842 9 LEKHFAFYGAYHSNKINVLIHTLFV 33 (203)
Q Consensus 9 L~~~l~~Y~~yH~N~~N~~IH~v~V 33 (203)
.++-+.-|++||.|-+|+.-+.+-+
T Consensus 37 I~rALely~EYH~dG~~k~y~~~~~ 61 (311)
T PHA02554 37 IQRALELYGEYHYDGVNKGYLKFKV 61 (311)
T ss_pred HHHHHHHHHHHhccchhceeEEEEc
Confidence 4678899999999999997655444
No 30
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=22.79 E-value=2.8e+02 Score=19.92 Aligned_cols=33 Identities=12% Similarity=0.292 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCccchHHHHHHHHH
Q 028842 155 ALLMAPFFVLLEVLQVFGYEPYPGFHANVEAKIRA 189 (203)
Q Consensus 155 ~l~igPlfV~~e~lf~lG~~p~~~l~~~v~~~i~~ 189 (203)
.++++|.|.+..-..+=+-. +++..+-+++++.
T Consensus 14 ~ifVap~wl~lHY~~k~~~~--~~ls~~d~~~L~~ 46 (75)
T TIGR02976 14 VIFVAPLWLILHYRSKRKTA--ASLSTDDQALLQE 46 (75)
T ss_pred HHHHHHHHHHHHHHhhhccC--CCCCHHHHHHHHH
Confidence 35678888887776554433 4455544444433
No 31
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=22.05 E-value=93 Score=24.86 Aligned_cols=39 Identities=23% Similarity=0.421 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHcCCCCCccchHHHHHHHHHHHHHHHHh
Q 028842 159 APFFVLLEVLQVFGYEPYPGFHANVEAKIRAEIKEWQDK 197 (203)
Q Consensus 159 gPlfV~~e~lf~lG~~p~~~l~~~v~~~i~~~i~~~~~~ 197 (203)
.=|.+++-+|.++.|+|..+.=++=++.|..++.+-++.
T Consensus 16 i~Flil~~ll~~~l~~pi~~~l~~R~~~I~~~l~~A~~~ 54 (164)
T PRK14471 16 ILFLILLLLLAKFAWKPILGAVKEREDSIKNALASAEEA 54 (164)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777888999876555444455566665555443
No 32
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=21.70 E-value=2e+02 Score=23.66 Aligned_cols=55 Identities=13% Similarity=0.119 Sum_probs=29.9
Q ss_pred cCCCCcchhhH--HHHHH-HHHHHHHHHHHHHcCCCCCccchHHHHHHHHHHHHHHHH
Q 028842 142 EKRAPALLDNL--VQALL-MAPFFVLLEVLQVFGYEPYPGFHANVEAKIRAEIKEWQD 196 (203)
Q Consensus 142 EgrkPalldnl--~q~l~-igPlfV~~e~lf~lG~~p~~~l~~~v~~~i~~~i~~~~~ 196 (203)
+|.-|-+=-+. .|.+. +.=|++++-++.++-|+|+.+.-++=+++|...+++-++
T Consensus 19 ~~gmp~ld~~t~~~q~~~~lI~F~iL~~ll~k~l~~PI~~~l~~R~~~I~~~l~~Ae~ 76 (181)
T PRK13454 19 APGMPQLDFSTFPNQIFWLLVTLVAIYFVLTRVALPRIGAVLAERQGTITNDLAAAEE 76 (181)
T ss_pred CCCCCCCcHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 67777662221 12222 223667777778888887655444445555555554443
No 33
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=20.58 E-value=87 Score=25.44 Aligned_cols=39 Identities=23% Similarity=0.416 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHcCCCCCccchHHHHHHHHHHHHHHHH
Q 028842 158 MAPFFVLLEVLQVFGYEPYPGFHANVEAKIRAEIKEWQD 196 (203)
Q Consensus 158 igPlfV~~e~lf~lG~~p~~~l~~~v~~~i~~~i~~~~~ 196 (203)
+.=+.|++-+|.++.|+|..+.=++=+++|..++.+-.+
T Consensus 29 ~inflil~~lL~~fl~kPi~~~l~~R~~~I~~~l~~Ae~ 67 (167)
T PRK08475 29 TINFLIFVGILWYFAAKPLKNFYKSRINKISKRLEEIQE 67 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777888899987655544445555555544433
No 34
>PRK09458 pspB phage shock protein B; Provisional
Probab=20.53 E-value=2.3e+02 Score=20.61 Aligned_cols=13 Identities=31% Similarity=0.685 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHH
Q 028842 155 ALLMAPFFVLLEV 167 (203)
Q Consensus 155 ~l~igPlfV~~e~ 167 (203)
.+++||.|+++.-
T Consensus 14 ~ifVaPiWL~LHY 26 (75)
T PRK09458 14 VLFVAPIWLWLHY 26 (75)
T ss_pred HHHHHHHHHHHhh
Confidence 4678888887643
No 35
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=20.24 E-value=3.4e+02 Score=19.54 Aligned_cols=30 Identities=17% Similarity=0.419 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCccchHHHHHH
Q 028842 155 ALLMAPFFVLLEVLQVFGYEPYPGFHANVEAK 186 (203)
Q Consensus 155 ~l~igPlfV~~e~lf~lG~~p~~~l~~~v~~~ 186 (203)
.+++||.|++..--.+-.-. ++|..+=+++
T Consensus 14 ~ifVap~WL~lHY~sk~~~~--~gLs~~d~~~ 43 (75)
T PF06667_consen 14 MIFVAPIWLILHYRSKWKSS--QGLSEEDEQR 43 (75)
T ss_pred HHHHHHHHHHHHHHHhcccC--CCCCHHHHHH
Confidence 35677777776655443322 3444443333
Done!