Query 028842
Match_columns 203
No_of_seqs 113 out of 438
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 04:54:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028842.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028842hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_F Cytochrome B559 subunit 22.8 35 0.0012 21.2 1.4 16 26-41 20-35 (44)
2 4dxw_A Navrh, ION transport pr 19.4 2.3E+02 0.0079 22.1 6.1 49 121-174 135-183 (229)
3 3ehe_A UDP-glucose 4-epimerase 19.3 91 0.0031 25.1 3.7 24 167-190 276-299 (313)
4 4b6a_O 60S ribosomal protein L 18.5 46 0.0016 27.3 1.6 49 138-188 110-161 (199)
5 4f4l_A ION transport protein; 17.2 98 0.0033 22.2 3.0 22 135-156 22-43 (112)
6 4ewi_A Nacht, LRR and PYD doma 16.2 59 0.002 23.9 1.6 34 163-199 73-106 (113)
7 1nla_A Transcriptional repress 16.0 43 0.0015 22.4 0.7 21 171-192 10-31 (64)
8 1m46_B IQ4, IQ4 motif from MYO 15.4 1.6E+02 0.0054 16.0 2.7 16 181-196 7-22 (26)
9 2kv5_A FST, putative uncharact 15.0 70 0.0024 18.8 1.4 15 150-165 2-16 (33)
10 2i3t_B Spindle assembly checkp 14.6 74 0.0025 20.7 1.5 29 1-29 21-50 (54)
No 1
>3arc_F Cytochrome B559 subunit beta; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_F* 3a0b_F* 3a0h_F* 1w5c_F* 3kzi_F* 3bz1_F* 1s5l_F* 2axt_F* 3bz2_F* 3prq_F* 3prr_F*
Probab=22.76 E-value=35 Score=21.22 Aligned_cols=16 Identities=44% Similarity=0.472 Sum_probs=12.9
Q ss_pred hhhhhhhhhHHHHHHH
Q 028842 26 VLIHTLFVWPILFSTL 41 (203)
Q Consensus 26 ~~IH~v~VP~I~~s~l 41 (203)
-++|-.+||.++|-.-
T Consensus 20 lAvH~lavPtVfflGa 35 (44)
T 3arc_F 20 VAVHTLAVPTIFFLGA 35 (44)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhhcccccceeeccH
Confidence 4799999999987543
No 2
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=19.40 E-value=2.3e+02 Score=22.10 Aligned_cols=49 Identities=22% Similarity=0.346 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHcCCC
Q 028842 121 KVAVAAQLICWTGQFLGHGIFEKRAPALLDNLVQALLMAPFFVLLEVLQVFGYE 174 (203)
Q Consensus 121 ~~al~v~vv~Wi~QFiGH~vfEgrkPalldnl~q~l~igPlfV~~e~lf~lG~~ 174 (203)
.+.+.++++-.+.=.+|...|+|..|.-+||..+++. .+.+++-.=||.
T Consensus 135 ~~~~~l~~~~~ifa~~g~~lf~~~~~~~F~~~~~a~~-----~lf~~~t~~~w~ 183 (229)
T 4dxw_A 135 FVSLLLFIILYIYATMGAILFGNDDPSRWGDLGISLI-----TLFQVLTLSSWE 183 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTSCTTTSSHHHHHH-----HHHHHHTTSSTH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcccccCHHHHHH-----HHHHHHccCCHH
Confidence 3445555555666677888899999998899887743 344555445553
No 3
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0
Probab=19.31 E-value=91 Score=25.14 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=14.7
Q ss_pred HHHHcCCCCCccchHHHHHHHHHH
Q 028842 167 VLQVFGYEPYPGFHANVEAKIRAE 190 (203)
Q Consensus 167 ~lf~lG~~p~~~l~~~v~~~i~~~ 190 (203)
-+..|||+|...+.+.+++.++.-
T Consensus 276 k~~~lG~~p~~~~~e~l~~~~~~~ 299 (313)
T 3ehe_A 276 KLKRLGWKPRYNSEEAVRMAVRDL 299 (313)
T ss_dssp HHHHHTCCCSCCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHH
Confidence 346789997445666665555443
No 4
>4b6a_O 60S ribosomal protein L16-A; large ribosomal subunit, ribosome biogenesis, ribosome matur factor, ribosome; 8.10A {Saccharomyces cerevisiae} PDB: 3izc_K 3izs_K 3o58_P 3o5h_P 3u5e_O 3u5i_O 1s1i_M
Probab=18.51 E-value=46 Score=27.26 Aligned_cols=49 Identities=20% Similarity=0.421 Sum_probs=33.1
Q ss_pred hccccCCCCcchhhHHHHHHHHH---HHHHHHHHHHcCCCCCccchHHHHHHHH
Q 028842 138 HGIFEKRAPALLDNLVQALLMAP---FFVLLEVLQVFGYEPYPGFHANVEAKIR 188 (203)
Q Consensus 138 H~vfEgrkPalldnl~q~l~igP---lfV~~e~lf~lG~~p~~~l~~~v~~~i~ 188 (203)
|- +|+.+|-.+++-...+-+-| +-.+-|+-..+|++ |++.-++++++=.
T Consensus 110 hp-h~aqk~~vvp~Al~~~~lkp~~Ky~~lg~ls~~~Gwk-~~~vv~~le~krk 161 (199)
T 4b6a_O 110 PP-YDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWK-YEDVVAKLEAKRK 161 (199)
T ss_dssp SG-GGGSCCBBCGGGBHHHHSCTTCCEEEHHHHHHHTTCC-CHHHHHHHHHHHH
T ss_pred CC-cccCCCEecchHHHhhccCCCCCeEEhhhhHHHhCcc-HHHHHHHHHHHHH
Confidence 76 58899887776433333334 56778999999998 6666666654433
No 5
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=17.19 E-value=98 Score=22.24 Aligned_cols=22 Identities=14% Similarity=0.433 Sum_probs=10.7
Q ss_pred HhhhccccCCCCcchhhHHHHH
Q 028842 135 FLGHGIFEKRAPALLDNLVQAL 156 (203)
Q Consensus 135 FiGH~vfEgrkPalldnl~q~l 156 (203)
.+|...|.++.|.-+||+.+++
T Consensus 22 i~G~~lFg~~~~~~F~~~~~s~ 43 (112)
T 4f4l_A 22 VMATNLYGATFPEWFGDLSKSL 43 (112)
T ss_dssp HHHHHHHTTTCHHHHSSHHHHH
T ss_pred HHHHHHHCCCccccccCHHHHH
Confidence 3344444444555555555543
No 6
>4ewi_A Nacht, LRR and PYD domains-containing protein 4; NLR proteins, death domain, pyrin domain, NLRP4, ASC, innate system, inflammasome, apoptosis; 2.28A {Homo sapiens}
Probab=16.24 E-value=59 Score=23.94 Aligned_cols=34 Identities=15% Similarity=0.219 Sum_probs=21.1
Q ss_pred HHHHHHHHcCCCCCccchHHHHHHHHHHHHHHHHhhc
Q 028842 163 VLLEVLQVFGYEPYPGFHANVEAKIRAEIKEWQDKKQ 199 (203)
Q Consensus 163 V~~e~lf~lG~~p~~~l~~~v~~~i~~~i~~~~~~~~ 199 (203)
|..++|.+++.+ +|..++++++...-+.+|+.-|
T Consensus 73 vtl~if~~mn~~---dL~e~~~~e~~~~~~~y~~~~k 106 (113)
T 4ewi_A 73 ITLRIFQKMDRK---DLCMKVMRERTGYTKTYQAHAK 106 (113)
T ss_dssp HHHHHHHHTTCH---HHHHHHHHHHHTC---------
T ss_pred HHHHHHHHhCHH---HHHHHHHHHHHhchHHHHHHHH
Confidence 457889999985 9999998888777777775433
No 7
>1nla_A Transcriptional repressor ARC; 3(10) helix, beta-ribbon, beta-sheet, structural switching; NMR {Enterobacteria phage P22} SCOP: a.43.1.1
Probab=16.05 E-value=43 Score=22.42 Aligned_cols=21 Identities=14% Similarity=0.047 Sum_probs=14.4
Q ss_pred cCCC-CCccchHHHHHHHHHHHH
Q 028842 171 FGYE-PYPGFHANVEAKIRAEIK 192 (203)
Q Consensus 171 lG~~-p~~~l~~~v~~~i~~~i~ 192 (203)
+..| | ++|+++++..++++-+
T Consensus 10 f~lRlp-~eLh~~l~~~A~~~Gr 31 (64)
T 1nla_A 10 FLNRWP-REVLDLVRKVAEENGR 31 (64)
T ss_dssp GGGSSC-HHHHHHHHHHHHHHTS
T ss_pred eEeeCC-HHHHHHHHHHHHHhCC
Confidence 4455 5 8899988877766543
No 8
>1m46_B IQ4, IQ4 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 2.10A {Saccharomyces cerevisiae}
Probab=15.42 E-value=1.6e+02 Score=16.00 Aligned_cols=16 Identities=44% Similarity=0.572 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 028842 181 ANVEAKIRAEIKEWQD 196 (203)
Q Consensus 181 ~~v~~~i~~~i~~~~~ 196 (203)
.+++++|+++.++-+-
T Consensus 7 tnlqkkirkelkqrql 22 (26)
T 1m46_B 7 TNLQKKIRKELKQRQL 22 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3567777777766543
No 9
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=14.99 E-value=70 Score=18.83 Aligned_cols=15 Identities=47% Similarity=0.859 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHHHHH
Q 028842 150 DNLVQALLMAPFFVLL 165 (203)
Q Consensus 150 dnl~q~l~igPlfV~~ 165 (203)
++++ ..+|||++|=.
T Consensus 2 ~~i~-~~IIaPivVGv 16 (33)
T 2kv5_A 2 KDLM-SLVIAPIFVGL 16 (33)
T ss_dssp CTTH-HHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHH
Confidence 4554 46899999843
No 10
>2i3t_B Spindle assembly checkpoint component; WD40 protein, beta propeller, mitotic spindle checkpoint, cell cycle; 2.80A {Saccharomyces cerevisiae}
Probab=14.60 E-value=74 Score=20.74 Aligned_cols=29 Identities=24% Similarity=0.251 Sum_probs=14.7
Q ss_pred CCCCCCCCHHHHHHH-HhhhhcCccchhhh
Q 028842 1 MGKSGLLDLEKHFAF-YGAYHSNKINVLIH 29 (203)
Q Consensus 1 m~~~~~f~L~~~l~~-Y~~yH~N~~N~~IH 29 (203)
||+..-+++++-++- .+.|+++.+|+.-|
T Consensus 21 ~~~~~E~sfeEllA~sRg~~~~~w~~~~~~ 50 (54)
T 2i3t_B 21 KGGRLEFSLEEVLAISRNVYKRVRTNRKHH 50 (54)
T ss_dssp ----CBCCHHHHHHHTTTCSSCC-------
T ss_pred CcccceeeHHHHHHHhcCcccccccccccc
Confidence 566667899998864 58899999998755
Done!