Query 028842
Match_columns 203
No_of_seqs 113 out of 438
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 04:54:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028842.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028842hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtf1 f.23.38.1 (F:11-45) Cy 23.8 16 0.0012 20.3 1.4 14 26-39 11-24 (35)
2 d1t2aa_ c.2.1.2 (A:) GDP-manno 19.3 42 0.0031 25.5 3.7 28 169-196 319-346 (347)
3 d1rpna_ c.2.1.2 (A:) GDP-manno 17.6 49 0.0036 24.7 3.7 25 169-193 293-317 (321)
4 d1u5sb2 g.39.1.3 (B:103-137) P 15.6 12 0.00085 20.9 -0.5 16 135-150 10-25 (35)
5 d1cuka1 a.5.1.1 (A:156-203) DN 15.5 34 0.0025 20.0 1.6 11 165-175 9-19 (48)
6 d1xfia_ e.50.1.1 (A:) Hypothet 15.3 69 0.005 26.3 4.2 32 165-196 103-135 (360)
7 d1l6ja1 a.20.1.2 (A:29-105) Ge 14.7 43 0.0031 21.2 2.2 32 165-197 18-49 (77)
8 d1ttea1 a.5.2.1 (A:161-215) Ub 14.1 70 0.0051 19.4 2.9 25 165-189 27-51 (55)
9 d1n7ha_ c.2.1.2 (A:) GDP-manno 12.7 84 0.0061 23.4 3.8 30 169-198 303-332 (339)
10 d1db3a_ c.2.1.2 (A:) GDP-manno 12.5 70 0.0051 24.7 3.4 25 169-193 328-352 (357)
No 1
>d2axtf1 f.23.38.1 (F:11-45) Cytochrome b559 subunit beta, PsbF {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=23.84 E-value=16 Score=20.25 Aligned_cols=14 Identities=50% Similarity=0.593 Sum_probs=11.9
Q ss_pred hhhhhhhhhHHHHH
Q 028842 26 VLIHTLFVWPILFS 39 (203)
Q Consensus 26 ~~IH~v~VP~I~~s 39 (203)
.++|..+||.++|-
T Consensus 11 lavh~l~vptvfFl 24 (35)
T d2axtf1 11 VAVHTLAVPTIFFL 24 (35)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhhcccchhhhH
Confidence 47899999999874
No 2
>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.34 E-value=42 Score=25.49 Aligned_cols=28 Identities=18% Similarity=0.368 Sum_probs=19.5
Q ss_pred HHcCCCCCccchHHHHHHHHHHHHHHHH
Q 028842 169 QVFGYEPYPGFHANVEAKIRAEIKEWQD 196 (203)
Q Consensus 169 f~lG~~p~~~l~~~v~~~i~~~i~~~~~ 196 (203)
..|||+|.-.+.+-+++-|+.+++.+|+
T Consensus 319 ~~Lgw~P~~sl~e~i~~~I~~~~~~~k~ 346 (347)
T d1t2aa_ 319 QKLNWKPRVAFDELVREMVHADVELMRT 346 (347)
T ss_dssp HHHCCCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCcCCCHHHHHHHHHHHHHHHHhc
Confidence 3489997446777787777776665543
No 3
>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=17.58 E-value=49 Score=24.73 Aligned_cols=25 Identities=16% Similarity=0.539 Sum_probs=15.9
Q ss_pred HHcCCCCCccchHHHHHHHHHHHHH
Q 028842 169 QVFGYEPYPGFHANVEAKIRAEIKE 193 (203)
Q Consensus 169 f~lG~~p~~~l~~~v~~~i~~~i~~ 193 (203)
..|||+|...+.+.+++-++..+++
T Consensus 293 k~lG~~P~~~l~e~i~~tv~~~l~~ 317 (321)
T d1rpna_ 293 RVLGWKPRTSLDELIRMMVEADLRR 317 (321)
T ss_dssp HHHCCCCCSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCcCCCHHHHHHHHHHHHHHH
Confidence 3489996445666666666555543
No 4
>d1u5sb2 g.39.1.3 (B:103-137) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.60 E-value=12 Score=20.89 Aligned_cols=16 Identities=38% Similarity=0.756 Sum_probs=12.3
Q ss_pred HhhhccccCCCCcchh
Q 028842 135 FLGHGIFEKRAPALLD 150 (203)
Q Consensus 135 FiGH~vfEgrkPalld 150 (203)
|.||..+|++--|.-+
T Consensus 10 F~G~rhyE~~g~ayCe 25 (35)
T d1u5sb2 10 FLGHRHYERKGLAYCE 25 (35)
T ss_dssp CSSSCCEEETTEEECH
T ss_pred cCCchhhhhcCchHHH
Confidence 6899999998766543
No 5
>d1cuka1 a.5.1.1 (A:156-203) DNA helicase RuvA subunit, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=15.48 E-value=34 Score=20.04 Aligned_cols=11 Identities=36% Similarity=0.836 Sum_probs=8.0
Q ss_pred HHHHHHcCCCC
Q 028842 165 LEVLQVFGYEP 175 (203)
Q Consensus 165 ~e~lf~lG~~p 175 (203)
.+.|-.|||+|
T Consensus 9 i~AL~~LGY~~ 19 (48)
T d1cuka1 9 VARLVALGYKP 19 (48)
T ss_dssp HHHHHHHTCCH
T ss_pred HHHHHHcCCCH
Confidence 35666799994
No 6
>d1xfia_ e.50.1.1 (A:) Hypothetical protein At2g17340 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=15.30 E-value=69 Score=26.30 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=24.9
Q ss_pred HHHHHHcCCC-CCccchHHHHHHHHHHHHHHHH
Q 028842 165 LEVLQVFGYE-PYPGFHANVEAKIRAEIKEWQD 196 (203)
Q Consensus 165 ~e~lf~lG~~-p~~~l~~~v~~~i~~~i~~~~~ 196 (203)
-++|..+|+. ||.+++++-++.+.+...+.++
T Consensus 103 e~~Lr~~Gf~DpY~~~K~~eN~~Al~~lp~~~~ 135 (360)
T d1xfia_ 103 EQVLRELGFRDIFKKVKDEENAKAISLFPQVVS 135 (360)
T ss_dssp HHHHHHTTCSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999 9999988877777666666554
No 7
>d1l6ja1 a.20.1.2 (A:29-105) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.73 E-value=43 Score=21.20 Aligned_cols=32 Identities=16% Similarity=0.146 Sum_probs=16.4
Q ss_pred HHHHHHcCCCCCccchHHHHHHHHHHHHHHHHh
Q 028842 165 LEVLQVFGYEPYPGFHANVEAKIRAEIKEWQDK 197 (203)
Q Consensus 165 ~e~lf~lG~~p~~~l~~~v~~~i~~~i~~~~~~ 197 (203)
-+.|.++||-| +.-...-.+..+..|++||+-
T Consensus 18 ~~yL~~fGYl~-~~~~~~~~~~~~~AIk~fQ~f 49 (77)
T d1l6ja1 18 EEYLYRYGYTR-VAEMRGESKSLGPALLLLQKQ 49 (77)
T ss_dssp HHHHHHTTCC------------CHHHHHHHHHH
T ss_pred HHHHHHcCCCC-CCCcccchHHHHHHHHHHHHH
Confidence 46788999984 222233345567778888764
No 8
>d1ttea1 a.5.2.1 (A:161-215) Ubiquitin-protein ligase ubc1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.05 E-value=70 Score=19.35 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=15.0
Q ss_pred HHHHHHcCCCCCccchHHHHHHHHH
Q 028842 165 LEVLQVFGYEPYPGFHANVEAKIRA 189 (203)
Q Consensus 165 ~e~lf~lG~~p~~~l~~~v~~~i~~ 189 (203)
.|+|.++|+|-...-..+.++++-.
T Consensus 27 I~VLrrlgik~~~~~~~~~~n~ilE 51 (55)
T d1ttea1 27 VEVLRRLGVKSLDPNDNNTANRIIE 51 (55)
T ss_dssp HHHHHHSCCSSCCSSCCHHHHHHHH
T ss_pred HHHHHHhCcCCCCcccchHHHHHHH
Confidence 5899999998222233444555433
No 9
>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=12.69 E-value=84 Score=23.45 Aligned_cols=30 Identities=23% Similarity=0.500 Sum_probs=19.0
Q ss_pred HHcCCCCCccchHHHHHHHHHHHHHHHHhh
Q 028842 169 QVFGYEPYPGFHANVEAKIRAEIKEWQDKK 198 (203)
Q Consensus 169 f~lG~~p~~~l~~~v~~~i~~~i~~~~~~~ 198 (203)
..|||+|.-++.+-+++-++-.++...+.|
T Consensus 303 ~~LGw~P~~~le~gi~~ti~~~~~~~~~~~ 332 (339)
T d1n7ha_ 303 EVLGWKPQVGFEKLVKMMVDEDLELAKREK 332 (339)
T ss_dssp HHHCCCCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCcCCCHHHHHHHHHHHHHHHHhhhh
Confidence 348999644677777777666555544443
No 10
>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}
Probab=12.54 E-value=70 Score=24.73 Aligned_cols=25 Identities=12% Similarity=0.356 Sum_probs=16.9
Q ss_pred HHcCCCCCccchHHHHHHHHHHHHH
Q 028842 169 QVFGYEPYPGFHANVEAKIRAEIKE 193 (203)
Q Consensus 169 f~lG~~p~~~l~~~v~~~i~~~i~~ 193 (203)
..|||+|.-.+++-+++-++.+++-
T Consensus 328 k~LGw~P~~sl~egI~~~I~~~l~~ 352 (357)
T d1db3a_ 328 EKLGWKPEITLREMVSEMVANDLEA 352 (357)
T ss_dssp HHHCCCCCSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCcCCCHHHHHHHHHHHHHHH
Confidence 4489997446777777777655554
Done!