Query 028843
Match_columns 203
No_of_seqs 202 out of 1824
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 04:55:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028843.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028843hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h89_C C-MYB, MYB proto-oncoge 100.0 1.5E-39 5E-44 255.7 4.1 138 20-158 3-141 (159)
2 3zqc_A MYB3; transcription-DNA 100.0 7.3E-37 2.5E-41 233.3 11.8 127 23-154 2-128 (131)
3 1gv2_A C-MYB, MYB proto-oncoge 100.0 2.3E-36 7.9E-41 222.1 11.1 103 21-124 2-104 (105)
4 2k9n_A MYB24; R2R3 domain, DNA 100.0 2.7E-36 9.2E-41 222.6 9.0 104 23-127 1-104 (107)
5 1h8a_C AMV V-MYB, MYB transfor 100.0 1.6E-35 5.3E-40 225.0 11.0 112 12-124 16-127 (128)
6 3osg_A MYB21; transcription-DN 100.0 2.9E-35 1E-39 223.1 10.5 106 17-124 5-110 (126)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 9.2E-33 3.2E-37 216.9 10.9 107 17-124 52-158 (159)
8 1h8a_C AMV V-MYB, MYB transfor 100.0 8.6E-31 2.9E-35 198.8 3.7 108 49-157 1-109 (128)
9 2dim_A Cell division cycle 5-l 99.9 3.1E-24 1.1E-28 146.4 4.4 68 16-84 2-69 (70)
10 1gv2_A C-MYB, MYB proto-oncoge 99.8 3.6E-22 1.2E-26 146.2 3.9 85 73-157 1-86 (105)
11 3osg_A MYB21; transcription-DN 99.8 4.9E-22 1.7E-26 150.2 4.1 88 71-158 6-93 (126)
12 2dim_A Cell division cycle 5-l 99.8 9.2E-21 3.1E-25 129.1 7.7 65 71-135 4-69 (70)
13 2k9n_A MYB24; R2R3 domain, DNA 99.8 1.5E-21 5.1E-26 143.5 3.1 82 76-157 1-83 (107)
14 3zqc_A MYB3; transcription-DNA 99.8 3.2E-21 1.1E-25 146.6 4.5 83 76-158 2-85 (131)
15 1ign_A Protein (RAP1); RAP1,ye 99.8 2.8E-20 9.7E-25 152.3 7.0 106 18-124 3-200 (246)
16 2llk_A Cyclin-D-binding MYB-li 99.8 1.4E-19 4.9E-24 123.9 5.6 58 63-121 10-67 (73)
17 2juh_A Telomere binding protei 99.8 2.4E-19 8.2E-24 133.7 6.9 85 15-100 9-103 (121)
18 2d9a_A B-MYB, MYB-related prot 99.8 4.7E-19 1.6E-23 117.1 4.9 57 18-75 3-59 (60)
19 2din_A Cell division cycle 5-l 99.8 4.5E-19 1.5E-23 119.4 4.6 60 69-129 2-61 (66)
20 2d9a_A B-MYB, MYB-related prot 99.8 1.1E-18 3.9E-23 115.2 6.3 56 71-126 3-59 (60)
21 1gvd_A MYB proto-oncogene prot 99.8 5.2E-19 1.8E-23 113.6 4.1 52 21-73 1-52 (52)
22 2cu7_A KIAA1915 protein; nucle 99.7 1.6E-18 5.4E-23 118.7 6.6 65 70-135 3-67 (72)
23 1ity_A TRF1; helix-turn-helix, 99.7 8.7E-19 3E-23 119.0 5.1 66 15-80 2-68 (69)
24 2roh_A RTBP1, telomere binding 99.7 3.3E-18 1.1E-22 127.7 7.6 80 17-97 25-114 (122)
25 1guu_A C-MYB, MYB proto-oncoge 99.7 8E-19 2.7E-23 112.6 3.7 52 21-73 1-52 (52)
26 1guu_A C-MYB, MYB proto-oncoge 99.7 3.7E-18 1.3E-22 109.5 6.2 51 74-124 1-52 (52)
27 1gvd_A MYB proto-oncogene prot 99.7 5.1E-18 1.7E-22 108.9 6.6 51 74-124 1-52 (52)
28 1ity_A TRF1; helix-turn-helix, 99.7 1.4E-17 4.9E-22 112.9 7.4 61 70-130 4-67 (69)
29 3sjm_A Telomeric repeat-bindin 99.7 6.5E-18 2.2E-22 113.0 3.8 57 19-75 7-64 (64)
30 1x41_A Transcriptional adaptor 99.7 1.4E-17 4.7E-22 110.1 4.6 55 19-74 4-58 (60)
31 1x41_A Transcriptional adaptor 99.7 3.2E-17 1.1E-21 108.2 5.5 54 71-124 3-57 (60)
32 1w0t_A Telomeric repeat bindin 99.7 6.6E-17 2.2E-21 104.1 5.9 49 75-123 1-52 (53)
33 3sjm_A Telomeric repeat-bindin 99.7 9.7E-17 3.3E-21 107.3 5.8 53 74-126 9-64 (64)
34 2elk_A SPCC24B10.08C protein; 99.7 6E-17 2.1E-21 106.2 4.7 52 19-70 5-56 (58)
35 2yum_A ZZZ3 protein, zinc fing 99.7 1.3E-16 4.4E-21 109.8 6.3 61 71-131 3-69 (75)
36 2yum_A ZZZ3 protein, zinc fing 99.6 6.3E-17 2.1E-21 111.4 3.5 60 18-78 3-67 (75)
37 2din_A Cell division cycle 5-l 99.6 3.8E-17 1.3E-21 109.8 2.0 58 17-77 3-60 (66)
38 1w0t_A Telomeric repeat bindin 99.6 9.2E-17 3.1E-21 103.4 3.7 50 22-71 1-51 (53)
39 2cu7_A KIAA1915 protein; nucle 99.6 1.2E-16 4E-21 109.3 3.7 59 16-76 2-60 (72)
40 2elk_A SPCC24B10.08C protein; 99.6 3.6E-16 1.2E-20 102.5 5.7 50 72-121 5-56 (58)
41 2ltp_A Nuclear receptor corepr 99.4 1.2E-16 4.2E-21 113.6 0.0 56 69-124 9-64 (89)
42 2juh_A Telomere binding protei 99.6 2.7E-16 9.4E-21 117.2 1.3 82 70-151 11-103 (121)
43 1ign_A Protein (RAP1); RAP1,ye 99.6 3E-15 1E-19 122.6 6.2 78 72-153 4-87 (246)
44 2cqr_A RSGI RUH-043, DNAJ homo 99.5 1.3E-14 4.6E-19 99.1 6.0 52 72-123 14-69 (73)
45 2llk_A Cyclin-D-binding MYB-li 99.5 9.9E-15 3.4E-19 99.7 4.7 59 14-76 14-72 (73)
46 2yus_A SWI/SNF-related matrix- 99.5 1.3E-14 4.5E-19 100.7 5.4 52 16-69 11-62 (79)
47 2roh_A RTBP1, telomere binding 99.5 8.5E-15 2.9E-19 109.3 4.3 79 71-149 26-115 (122)
48 2ckx_A NGTRF1, telomere bindin 99.5 2.2E-14 7.4E-19 100.4 6.1 69 24-93 1-79 (83)
49 2aje_A Telomere repeat-binding 99.5 1.9E-14 6.5E-19 104.8 5.7 80 16-95 6-94 (105)
50 2yus_A SWI/SNF-related matrix- 99.5 2.1E-14 7.2E-19 99.7 4.5 49 72-120 14-62 (79)
51 2cqr_A RSGI RUH-043, DNAJ homo 99.5 2.4E-14 8.2E-19 97.9 3.8 56 15-71 10-68 (73)
52 2ltp_A Nuclear receptor corepr 99.2 7.8E-15 2.7E-19 104.2 0.0 56 15-72 8-63 (89)
53 2aje_A Telomere repeat-binding 99.4 2.5E-13 8.7E-18 98.9 7.4 52 71-122 8-64 (105)
54 1x58_A Hypothetical protein 49 99.4 3E-13 1E-17 88.8 6.5 51 74-124 6-59 (62)
55 2ckx_A NGTRF1, telomere bindin 99.4 1.7E-13 5.8E-18 95.9 5.7 46 77-122 1-51 (83)
56 2cjj_A Radialis; plant develop 99.3 1.9E-12 6.6E-17 92.3 5.1 50 75-124 7-60 (93)
57 2cjj_A Radialis; plant develop 99.2 5.2E-12 1.8E-16 90.1 2.7 48 22-70 7-57 (93)
58 2eqr_A N-COR1, N-COR, nuclear 99.1 6.7E-11 2.3E-15 78.0 5.8 48 75-122 11-58 (61)
59 3hm5_A DNA methyltransferase 1 99.1 6.4E-11 2.2E-15 84.1 4.5 66 59-128 17-87 (93)
60 2eqr_A N-COR1, N-COR, nuclear 99.1 1.5E-10 5.1E-15 76.3 4.8 53 16-70 5-57 (61)
61 1x58_A Hypothetical protein 49 99.0 1.4E-10 4.9E-15 76.0 3.3 50 20-71 5-57 (62)
62 2cqq_A RSGI RUH-037, DNAJ homo 98.9 1.4E-09 4.9E-14 73.9 5.9 51 73-124 5-59 (72)
63 2iw5_B Protein corest, REST co 98.9 1.8E-09 6E-14 87.8 7.1 50 74-123 131-180 (235)
64 2cqq_A RSGI RUH-037, DNAJ homo 98.8 1.8E-09 6.2E-14 73.4 3.2 50 20-71 5-57 (72)
65 1wgx_A KIAA1903 protein; MYB D 98.8 8.5E-09 2.9E-13 70.0 6.0 55 75-129 7-65 (73)
66 1fex_A TRF2-interacting telome 98.7 4.6E-09 1.6E-13 68.6 2.9 48 23-71 2-58 (59)
67 1wgx_A KIAA1903 protein; MYB D 98.7 8.8E-09 3E-13 69.9 3.9 48 23-71 8-58 (73)
68 2xag_B REST corepressor 1; ami 98.7 8.6E-09 2.9E-13 92.5 5.0 46 77-122 381-426 (482)
69 1fex_A TRF2-interacting telome 98.7 3.4E-08 1.2E-12 64.5 5.4 47 76-122 2-58 (59)
70 2iw5_B Protein corest, REST co 98.6 1.9E-08 6.7E-13 81.7 4.6 51 19-71 129-179 (235)
71 1ofc_X ISWI protein; nuclear p 98.5 2.9E-07 9.9E-12 78.4 7.1 99 24-123 111-275 (304)
72 2yqk_A Arginine-glutamic acid 98.4 5.8E-07 2E-11 59.3 6.2 49 71-119 4-53 (63)
73 4eef_G F-HB80.4, designed hema 98.3 1.6E-07 5.5E-12 63.3 1.6 44 75-118 19-66 (74)
74 1ug2_A 2610100B20RIK gene prod 98.3 6.1E-07 2.1E-11 62.7 4.3 45 78-122 35-82 (95)
75 2lr8_A CAsp8-associated protei 97.6 1.2E-07 4.2E-12 62.7 0.0 44 78-122 16-62 (70)
76 4eef_G F-HB80.4, designed hema 98.2 1.4E-07 5E-12 63.5 0.1 44 23-67 20-66 (74)
77 2yqk_A Arginine-glutamic acid 98.2 1.1E-06 3.9E-11 57.9 4.3 52 16-69 2-54 (63)
78 4iej_A DNA methyltransferase 1 98.1 2.9E-06 9.8E-11 59.9 4.6 60 64-127 22-86 (93)
79 4a69_C Nuclear receptor corepr 98.0 8.5E-06 2.9E-10 57.9 5.6 44 76-119 43-86 (94)
80 2crg_A Metastasis associated p 98.0 1E-05 3.5E-10 54.4 5.6 45 75-119 7-52 (70)
81 2xag_B REST corepressor 1; ami 98.0 5.5E-06 1.9E-10 74.4 4.7 50 20-71 377-426 (482)
82 3hm5_A DNA methyltransferase 1 97.7 1.5E-05 5E-10 56.4 2.8 49 22-71 29-81 (93)
83 4a69_C Nuclear receptor corepr 97.7 1.9E-05 6.5E-10 56.1 3.1 45 23-69 43-87 (94)
84 1ug2_A 2610100B20RIK gene prod 97.7 7E-05 2.4E-09 52.3 5.4 46 24-70 34-81 (95)
85 2crg_A Metastasis associated p 97.7 3.1E-05 1.1E-09 52.0 3.3 46 22-69 7-53 (70)
86 4b4c_A Chromodomain-helicase-D 97.5 0.00024 8.1E-09 57.0 7.7 101 21-122 5-195 (211)
87 2ebi_A DNA binding protein GT- 97.5 2.9E-05 1E-09 53.9 1.3 50 22-71 3-64 (86)
88 2y9y_A Imitation switch protei 97.5 0.00025 8.4E-09 61.8 7.4 100 24-124 124-292 (374)
89 2ebi_A DNA binding protein GT- 97.4 0.00016 5.4E-09 50.2 4.4 54 76-129 4-71 (86)
90 2lr8_A CAsp8-associated protei 96.4 3.9E-05 1.3E-09 50.7 0.0 46 24-71 15-62 (70)
91 4iej_A DNA methyltransferase 1 95.5 0.01 3.6E-07 41.6 3.3 49 21-70 28-80 (93)
92 1irz_A ARR10-B; helix-turn-hel 95.5 0.034 1.2E-06 36.3 5.5 47 74-120 5-56 (64)
93 4b4c_A Chromodomain-helicase-D 94.4 0.047 1.6E-06 43.4 4.9 30 23-52 134-163 (211)
94 1irz_A ARR10-B; helix-turn-hel 94.0 0.07 2.4E-06 34.8 4.1 51 19-69 3-56 (64)
95 1ofc_X ISWI protein; nuclear p 93.4 0.13 4.3E-06 43.7 5.9 46 77-122 111-157 (304)
96 2xb0_X Chromo domain-containin 93.3 0.061 2.1E-06 44.9 3.7 29 24-52 169-197 (270)
97 2xb0_X Chromo domain-containin 91.4 0.14 4.8E-06 42.7 3.6 25 78-102 170-195 (270)
98 2rq5_A Protein jumonji; develo 81.7 0.94 3.2E-05 33.1 2.8 57 33-92 46-113 (121)
99 2y9y_A Imitation switch protei 76.6 2.2 7.5E-05 37.0 4.0 32 22-53 227-261 (374)
100 3cz6_A DNA-binding protein RAP 74.4 3.6 0.00012 31.5 4.2 32 17-51 108-147 (168)
101 2li6_A SWI/SNF chromatin-remod 74.2 1.7 6E-05 31.2 2.4 39 33-72 53-98 (116)
102 1ig6_A MRF-2, modulator recogn 69.3 3.2 0.00011 29.2 2.7 41 32-72 36-87 (107)
103 2jrz_A Histone demethylase jar 64.5 2.7 9.4E-05 30.2 1.6 40 33-72 44-93 (117)
104 1c20_A DEAD ringer protein; DN 62.8 3 0.0001 30.4 1.6 40 33-72 56-106 (128)
105 2li6_A SWI/SNF chromatin-remod 61.9 5.1 0.00017 28.6 2.7 39 86-124 53-99 (116)
106 2jxj_A Histone demethylase jar 61.4 3.8 0.00013 28.2 1.8 40 33-72 40-89 (96)
107 2cxy_A BAF250B subunit, HBAF25 58.4 3.9 0.00013 29.7 1.5 40 33-72 55-104 (125)
108 2jrz_A Histone demethylase jar 58.1 11 0.00038 26.8 4.0 39 86-124 44-94 (117)
109 2lm1_A Lysine-specific demethy 57.9 3.7 0.00013 28.8 1.3 41 32-72 47-97 (107)
110 2eqy_A RBP2 like, jumonji, at 56.9 5.1 0.00017 29.0 1.9 39 33-71 46-94 (122)
111 2lm1_A Lysine-specific demethy 56.0 13 0.00046 25.8 4.0 39 86-124 48-98 (107)
112 2o8x_A Probable RNA polymerase 52.5 12 0.00042 23.0 3.1 41 82-123 18-58 (70)
113 2cxy_A BAF250B subunit, HBAF25 51.3 17 0.00057 26.2 4.0 39 86-124 55-105 (125)
114 2eqy_A RBP2 like, jumonji, at 50.9 16 0.00056 26.2 3.9 39 86-124 46-96 (122)
115 1ku3_A Sigma factor SIGA; heli 50.1 14 0.00049 23.3 3.1 41 83-124 14-58 (73)
116 3i4p_A Transcriptional regulat 48.8 7.4 0.00025 29.0 1.8 90 29-121 3-124 (162)
117 2rq5_A Protein jumonji; develo 48.0 17 0.00059 26.2 3.6 39 86-124 46-97 (121)
118 2kk0_A AT-rich interactive dom 47.9 16 0.00054 27.1 3.4 54 33-86 68-134 (145)
119 2kk0_A AT-rich interactive dom 47.6 21 0.00073 26.4 4.1 39 86-124 68-119 (145)
120 3cz6_A DNA-binding protein RAP 47.6 17 0.00057 27.8 3.5 17 72-88 110-126 (168)
121 1c20_A DEAD ringer protein; DN 46.4 22 0.00075 25.6 4.0 39 86-124 56-107 (128)
122 3e7l_A Transcriptional regulat 46.0 15 0.0005 22.9 2.6 29 28-57 18-46 (63)
123 1kkx_A Transcription regulator 45.8 11 0.00038 27.2 2.2 38 87-124 53-98 (123)
124 2p7v_B Sigma-70, RNA polymeras 44.0 17 0.00057 22.6 2.7 30 94-124 24-53 (68)
125 1umq_A Photosynthetic apparatu 35.0 48 0.0016 22.0 3.9 33 25-58 37-69 (81)
126 3i4p_A Transcriptional regulat 34.9 50 0.0017 24.3 4.5 45 82-127 3-48 (162)
127 2jvw_A Uncharacterized protein 34.6 34 0.0012 23.2 3.0 45 31-88 18-69 (88)
128 3hug_A RNA polymerase sigma fa 34.2 33 0.0011 22.6 3.1 40 83-123 41-80 (92)
129 3eyi_A Z-DNA-binding protein 1 34.1 42 0.0014 21.9 3.3 39 25-64 6-44 (72)
130 2p1m_A SKP1-like protein 1A; F 33.2 24 0.00082 26.3 2.4 35 47-89 119-153 (160)
131 2yqf_A Ankyrin-1; death domain 33.2 54 0.0018 22.8 4.2 35 80-115 14-48 (111)
132 2e1c_A Putative HTH-type trans 33.1 28 0.00094 26.1 2.8 44 29-74 27-70 (171)
133 2q1z_A RPOE, ECF SIGE; ECF sig 29.0 45 0.0015 24.3 3.4 28 95-123 151-178 (184)
134 1k78_A Paired box protein PAX5 28.7 1.5E+02 0.0052 20.8 8.8 68 22-94 29-106 (149)
135 2of5_H Leucine-rich repeat and 28.6 46 0.0016 23.5 3.2 31 84-115 13-43 (118)
136 2of5_A Death domain-containing 28.6 53 0.0018 23.2 3.5 29 86-115 26-54 (114)
137 1tty_A Sigma-A, RNA polymerase 28.1 50 0.0017 21.5 3.1 40 84-124 23-66 (87)
138 1x3u_A Transcriptional regulat 28.1 67 0.0023 20.0 3.7 43 79-124 17-59 (79)
139 2o71_A Death domain-containing 27.7 56 0.0019 23.1 3.5 29 86-115 26-54 (115)
140 1or7_A Sigma-24, RNA polymeras 25.8 68 0.0023 23.5 3.9 28 95-123 156-183 (194)
141 1ntc_A Protein (nitrogen regul 24.9 1E+02 0.0035 20.3 4.3 35 82-117 51-85 (91)
142 1wxp_A THO complex subunit 1; 24.6 96 0.0033 21.4 4.3 31 84-115 18-48 (110)
143 3c57_A Two component transcrip 24.2 71 0.0024 21.2 3.4 44 78-124 27-70 (95)
144 2cyy_A Putative HTH-type trans 23.5 42 0.0014 24.2 2.2 41 30-72 8-48 (151)
145 1xsv_A Hypothetical UPF0122 pr 23.2 89 0.003 21.6 3.8 39 83-122 29-67 (113)
146 2ast_A S-phase kinase-associat 23.1 38 0.0013 25.0 1.9 34 47-88 120-153 (159)
147 2e1c_A Putative HTH-type trans 22.2 90 0.0031 23.2 4.0 46 81-127 26-72 (171)
148 2dbb_A Putative HTH-type trans 21.9 1E+02 0.0036 21.9 4.2 43 82-125 9-52 (151)
149 1fse_A GERE; helix-turn-helix 21.5 79 0.0027 19.2 3.0 45 77-124 10-54 (74)
150 3k6g_A Telomeric repeat-bindin 21.1 1.9E+02 0.0065 20.2 5.0 63 31-96 14-86 (111)
151 1je8_A Nitrate/nitrite respons 21.1 79 0.0027 20.3 3.0 44 78-124 21-64 (82)
152 3v7d_A Suppressor of kinetocho 20.9 44 0.0015 25.2 1.9 35 46-88 126-160 (169)
153 1eto_A FIS, factor for inversi 20.8 64 0.0022 22.0 2.6 30 28-58 57-86 (98)
154 1dw9_A Cyanate lyase; cyanate 20.3 94 0.0032 23.4 3.6 34 84-118 15-48 (156)
No 1
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=100.00 E-value=1.5e-39 Score=255.73 Aligned_cols=138 Identities=28% Similarity=0.556 Sum_probs=94.6
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccCCCCCCCCChHHHHHHHHHHHHhCC-ch
Q 028843 20 VVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDDEEDLILRLHKLLGS-RW 98 (203)
Q Consensus 20 ~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~WT~eEd~~Ll~~v~~~G~-~W 98 (203)
.+++++||+|||++|+++|.+||..+|..||..|+ +|++.||++||.++|+|.+++++||+|||++|+++|..||. +|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 36789999999999999999999889999999999 99999999999999999999999999999999999999995 79
Q ss_pred hhhhccCCCCCHHHHHHHHHHhhcccccCCCCCCCCCCchhhhhhhCCCCCCcccccCCc
Q 028843 99 SLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTPQQPQQPATTRLKVPENTSEIAPVNEE 158 (203)
Q Consensus 99 ~~Ia~~l~~Rt~~q~k~Rw~~~l~~~~~~~~~t~~e~~~l~~~~~~~~~~~s~i~~~~~~ 158 (203)
..||..|||||+.||++||.++|++.+++++||++|+..|+.++..+|.+|+.||....+
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~g 141 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPG 141 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCHHHHHHHCCC
Confidence 999999999999999999999999999999999999999999999999999999987543
No 2
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=7.3e-37 Score=233.30 Aligned_cols=127 Identities=34% Similarity=0.637 Sum_probs=109.3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccCCCCCCCCChHHHHHHHHHHHHhCCchhhhh
Q 028843 23 RGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDDEEDLILRLHKLLGSRWSLIA 102 (203)
Q Consensus 23 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~Ia 102 (203)
||+||+|||++|+.+|..||.++|..||..|+ +|++.||++||.++|+|.+++|+||+|||++|+++|.+||++|+.||
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 79999999999999999999889999999998 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHhhcccccCCCCCCCCCCchhhhhhhCCCCCCcccc
Q 028843 103 GRLPGRTDNEIKNYWNSHLSKKINHKHKTPQQPQQPATTRLKVPENTSEIAP 154 (203)
Q Consensus 103 ~~l~~Rt~~q~k~Rw~~~l~~~~~~~~~t~~e~~~l~~~~~~~~~~~s~i~~ 154 (203)
+.|||||+.+|++||+.+|++.+....++.+...+. ......|+.|++
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~~~p~----~~kk~~~~~i~k 128 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLPD----RSKKRKAADVPK 128 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCCCCCC----CC----------
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcCCCcccccCch----hhhhhhhhhcch
Confidence 999999999999999999999999888776654331 122345666654
No 3
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=2.3e-36 Score=222.08 Aligned_cols=103 Identities=45% Similarity=0.871 Sum_probs=99.0
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccCCCCCCCCChHHHHHHHHHHHHhCCchhh
Q 028843 21 VNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDDEEDLILRLHKLLGSRWSL 100 (203)
Q Consensus 21 ~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~ 100 (203)
+++|+||+|||++|+++|.+||..+|..||..|+ +|++.||++||.++|+|.+++++||+|||.+|+++|.+||++|+.
T Consensus 2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~ 80 (105)
T 1gv2_A 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE 80 (105)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence 6899999999999999999999888999999998 999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCHHHHHHHHHHhhccc
Q 028843 101 IAGRLPGRTDNEIKNYWNSHLSKK 124 (203)
Q Consensus 101 Ia~~l~~Rt~~q~k~Rw~~~l~~~ 124 (203)
||+.|||||+.+|++||+.+++++
T Consensus 81 Ia~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 81 IAKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HHTTCTTCCHHHHHHHHHHHTC--
T ss_pred HHHHcCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999998865
No 4
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=2.7e-36 Score=222.64 Aligned_cols=104 Identities=31% Similarity=0.548 Sum_probs=99.8
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccCCCCCCCCChHHHHHHHHHHHHhCCchhhhh
Q 028843 23 RGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDDEEDLILRLHKLLGSRWSLIA 102 (203)
Q Consensus 23 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~Ia 102 (203)
||+||+|||++|+++|..||..+|..||..|| +|++.||++||.++|+|.+++|+||+|||.+|+++|.+||++|+.||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 68999999999999999999889999999999 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHhhcccccC
Q 028843 103 GRLPGRTDNEIKNYWNSHLSKKINH 127 (203)
Q Consensus 103 ~~l~~Rt~~q~k~Rw~~~l~~~~~~ 127 (203)
+.|||||+.+|++||+.++++..+.
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 9999999999999999998876543
No 5
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=1.6e-35 Score=225.02 Aligned_cols=112 Identities=42% Similarity=0.802 Sum_probs=102.5
Q ss_pred CCCCCCCCCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccCCCCCCCCChHHHHHHHHHH
Q 028843 12 NNDASGKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDDEEDLILRLH 91 (203)
Q Consensus 12 ~~~~~~~~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~WT~eEd~~Ll~~v 91 (203)
.+...-.|.+++|+||+|||++|+++|.+||..+|..||..|+ +|++.||++||.++|+|.+++++||+|||.+|+++|
T Consensus 16 Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~ 94 (128)
T 1h8a_C 16 RWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAH 94 (128)
T ss_dssp ------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHH
T ss_pred HHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHH
Confidence 3444566889999999999999999999999888999999999 999999999999999999999999999999999999
Q ss_pred HHhCCchhhhhccCCCCCHHHHHHHHHHhhccc
Q 028843 92 KLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKK 124 (203)
Q Consensus 92 ~~~G~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~ 124 (203)
.+||++|+.||+.|||||+.+|++||+.++++.
T Consensus 95 ~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 95 KRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp HHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred HHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999998765
No 6
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=100.00 E-value=2.9e-35 Score=223.05 Aligned_cols=106 Identities=35% Similarity=0.643 Sum_probs=101.1
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccCCCCCCCCChHHHHHHHHHHHHhCC
Q 028843 17 GKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDDEEDLILRLHKLLGS 96 (203)
Q Consensus 17 ~~~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~WT~eEd~~Ll~~v~~~G~ 96 (203)
.++..++|+||+|||++|+++|..||. +|..||..|+ +|++.||++||.++|+|.+++|+||+|||++|+++|.+||+
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 357889999999999999999999996 8999999999 99999999999999999999999999999999999999999
Q ss_pred chhhhhccCCCCCHHHHHHHHHHhhccc
Q 028843 97 RWSLIAGRLPGRTDNEIKNYWNSHLSKK 124 (203)
Q Consensus 97 ~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~ 124 (203)
+|+.||+.|||||+.+|++||..++++.
T Consensus 83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 83 QWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999988764
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.98 E-value=9.2e-33 Score=216.92 Aligned_cols=107 Identities=43% Similarity=0.819 Sum_probs=102.3
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccCCCCCCCCChHHHHHHHHHHHHhCC
Q 028843 17 GKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDDEEDLILRLHKLLGS 96 (203)
Q Consensus 17 ~~~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~WT~eEd~~Ll~~v~~~G~ 96 (203)
-.|.+++|+||+|||++|+++|..||..+|..||..|+ +|++.||+.||.++|+|.+++++||+|||.+|++++.+||+
T Consensus 52 l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~ 130 (159)
T 1h89_C 52 LNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 130 (159)
T ss_dssp TCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred cCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCC
Confidence 45778999999999999999999999878999999998 99999999999999999999999999999999999999999
Q ss_pred chhhhhccCCCCCHHHHHHHHHHhhccc
Q 028843 97 RWSLIAGRLPGRTDNEIKNYWNSHLSKK 124 (203)
Q Consensus 97 ~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~ 124 (203)
+|+.||+.|||||+++|++||+.+++++
T Consensus 131 ~W~~Ia~~l~gRt~~~~knr~~~~~r~~ 158 (159)
T 1h89_C 131 RWAEIAKLLPGRTDNAIKNHWNSTMRRK 158 (159)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999988765
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.96 E-value=8.6e-31 Score=198.83 Aligned_cols=108 Identities=23% Similarity=0.466 Sum_probs=84.3
Q ss_pred hhhhhccCcCCcccchhhhhcccCCCCCCCCChHHHHHHHHHHHHhCC-chhhhhccCCCCCHHHHHHHHHHhhcccccC
Q 028843 49 VATESGLNRCGKSCRLRWLNYLRPNIKRGNISDDEEDLILRLHKLLGS-RWSLIAGRLPGRTDNEIKNYWNSHLSKKINH 127 (203)
Q Consensus 49 Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~WT~eEd~~Ll~~v~~~G~-~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~~~~ 127 (203)
||+.|+ +|++.||+.||.++|+|.+++|+||+|||++|+++|..||. +|..||..|||||+.||++||.++|++.+++
T Consensus 1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 788998 99999999999999999999999999999999999999995 6999999999999999999999999999999
Q ss_pred CCCCCCCCCchhhhhhhCCCCCCcccccCC
Q 028843 128 KHKTPQQPQQPATTRLKVPENTSEIAPVNE 157 (203)
Q Consensus 128 ~~~t~~e~~~l~~~~~~~~~~~s~i~~~~~ 157 (203)
++||++|+..|+.++..+|.+|+.||....
T Consensus 80 ~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~ 109 (128)
T 1h8a_C 80 TSWTEEEDRIIYQAHKRLGNRWAEIAKLLP 109 (128)
T ss_dssp SCCCHHHHHHHHHHHHHHCSCHHHHGGGST
T ss_pred ccCCHHHHHHHHHHHHHHCcCHHHHHHHCC
Confidence 999999999999999999999999998753
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=3.1e-24 Score=146.43 Aligned_cols=68 Identities=26% Similarity=0.556 Sum_probs=64.8
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccCCCCCCCCChHHH
Q 028843 16 SGKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDDEE 84 (203)
Q Consensus 16 ~~~~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~WT~eEd 84 (203)
+..+.+++|+||+|||++|+++|.+||..+|..||..|+ +|++.||+.||.++|+|.+++++||+|||
T Consensus 2 ss~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 2 SSGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 345789999999999999999999999889999999999 99999999999999999999999999997
No 10
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.85 E-value=3.6e-22 Score=146.19 Aligned_cols=85 Identities=22% Similarity=0.463 Sum_probs=81.1
Q ss_pred CCCCCCCChHHHHHHHHHHHHhCC-chhhhhccCCCCCHHHHHHHHHHhhcccccCCCCCCCCCCchhhhhhhCCCCCCc
Q 028843 73 NIKRGNISDDEEDLILRLHKLLGS-RWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTPQQPQQPATTRLKVPENTSE 151 (203)
Q Consensus 73 ~~~~~~WT~eEd~~Ll~~v~~~G~-~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~~~~~~~t~~e~~~l~~~~~~~~~~~s~ 151 (203)
++++|+||+|||++|+++|..||. +|..||..|||||+.||++||.++|+|.+++++||++|+..|+.++..+|.+|+.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~ 80 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE 80 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence 368999999999999999999996 7999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCC
Q 028843 152 IAPVNE 157 (203)
Q Consensus 152 i~~~~~ 157 (203)
||....
T Consensus 81 Ia~~l~ 86 (105)
T 1gv2_A 81 IAKLLP 86 (105)
T ss_dssp HHTTCT
T ss_pred HHHHcC
Confidence 998753
No 11
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.84 E-value=4.9e-22 Score=150.19 Aligned_cols=88 Identities=19% Similarity=0.327 Sum_probs=83.4
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhcccccCCCCCCCCCCchhhhhhhCCCCCC
Q 028843 71 RPNIKRGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTPQQPQQPATTRLKVPENTS 150 (203)
Q Consensus 71 ~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~~~~~~~t~~e~~~l~~~~~~~~~~~s 150 (203)
.+..++|+||+|||++|+++|..||.+|..||..|||||+.||++||.++|++.+++++||++||..|+.++..+|.+|+
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W~ 85 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQWA 85 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCc
Q 028843 151 EIAPVNEE 158 (203)
Q Consensus 151 ~i~~~~~~ 158 (203)
.|+....+
T Consensus 86 ~Ia~~l~g 93 (126)
T 3osg_A 86 IIAKFFPG 93 (126)
T ss_dssp HHHTTSTT
T ss_pred HHHHHcCC
Confidence 99987543
No 12
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=9.2e-21 Score=129.12 Aligned_cols=65 Identities=20% Similarity=0.324 Sum_probs=62.9
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhcccccCCCCCCCCC
Q 028843 71 RPNIKRGNISDDEEDLILRLHKLLG-SRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTPQQP 135 (203)
Q Consensus 71 ~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~~~~~~~t~~e~ 135 (203)
.|.+++++||+|||++|+++|.+|| ++|..||..|+|||+.||++||.++|++.+++++||++||
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 5778999999999999999999999 7999999999999999999999999999999999999997
No 13
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.83 E-value=1.5e-21 Score=143.51 Aligned_cols=82 Identities=12% Similarity=0.234 Sum_probs=78.6
Q ss_pred CCCCChHHHHHHHHHHHHhCC-chhhhhccCCCCCHHHHHHHHHHhhcccccCCCCCCCCCCchhhhhhhCCCCCCcccc
Q 028843 76 RGNISDDEEDLILRLHKLLGS-RWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTPQQPQQPATTRLKVPENTSEIAP 154 (203)
Q Consensus 76 ~~~WT~eEd~~Ll~~v~~~G~-~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~~~~~~~t~~e~~~l~~~~~~~~~~~s~i~~ 154 (203)
+|+||+|||++|+++|..||. +|..||..|||||+.||+.||.++|+|.+++++||++|+..|+.++..+|.+|+.||.
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~ 80 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK 80 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 589999999999999999995 8999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 028843 155 VNE 157 (203)
Q Consensus 155 ~~~ 157 (203)
...
T Consensus 81 ~l~ 83 (107)
T 2k9n_A 81 FLK 83 (107)
T ss_dssp HHS
T ss_pred HCC
Confidence 653
No 14
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.82 E-value=3.2e-21 Score=146.61 Aligned_cols=83 Identities=27% Similarity=0.419 Sum_probs=79.8
Q ss_pred CCCCChHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhcccccCCCCCCCCCCchhhhhhhCCCCCCcccc
Q 028843 76 RGNISDDEEDLILRLHKLLG-SRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTPQQPQQPATTRLKVPENTSEIAP 154 (203)
Q Consensus 76 ~~~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~~~~~~~t~~e~~~l~~~~~~~~~~~s~i~~ 154 (203)
+|+||+|||++|+++|..|| .+|..||..|||||+.||+.||.++|.+.+++++||++||..|+.++..+|.+|+.||.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~ 81 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAK 81 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 69999999999999999999 78999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCc
Q 028843 155 VNEE 158 (203)
Q Consensus 155 ~~~~ 158 (203)
...+
T Consensus 82 ~l~g 85 (131)
T 3zqc_A 82 LIPG 85 (131)
T ss_dssp TSTT
T ss_pred HcCC
Confidence 7643
No 15
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.81 E-value=2.8e-20 Score=152.30 Aligned_cols=106 Identities=21% Similarity=0.318 Sum_probs=92.1
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCC-----hhhhhhhhccCcCCcccchhhhhcccCCCC-----------------
Q 028843 18 KNVVNRGAWTAEEDRKLTEYIEIHGAKR-----WKNVATESGLNRCGKSCRLRWLNYLRPNIK----------------- 75 (203)
Q Consensus 18 ~~~~~k~~WT~eED~~L~~~v~~~g~~~-----W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~----------------- 75 (203)
.+.+++++||+|||++|+++|.++|... |..||+.|+ |||+.||+.||.++|.+.+.
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 3568899999999999999999998542 999999999 99999999999999999986
Q ss_pred ------------CCCCChHHHHHHHHHHHH-h------------------------------------------------
Q 028843 76 ------------RGNISDDEEDLILRLHKL-L------------------------------------------------ 94 (203)
Q Consensus 76 ------------~~~WT~eEd~~Ll~~v~~-~------------------------------------------------ 94 (203)
+..||.+||-.|+..+.+ |
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 789999999999998876 1
Q ss_pred -----CC----chhhhhccCCCCCHHHHHHHHHHhhccc
Q 028843 95 -----GS----RWSLIAGRLPGRTDNEIKNYWNSHLSKK 124 (203)
Q Consensus 95 -----G~----~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~ 124 (203)
|+ .|..||+.+|+||..++|+||...|+..
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 11 6999999999999999999999888764
No 16
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-19 Score=123.87 Aligned_cols=58 Identities=19% Similarity=0.284 Sum_probs=47.2
Q ss_pred chhhhhcccCCCCCCCCChHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhh
Q 028843 63 RLRWLNYLRPNIKRGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHL 121 (203)
Q Consensus 63 r~Rw~~~l~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~~Rt~~q~k~Rw~~~l 121 (203)
--||.++|+|++++++||+|||++|+++|.+||++|+.||+.| |||+++||+||+.+.
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~ 67 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK 67 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 3588999999999999999999999999999999999999999 999999999998643
No 17
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.78 E-value=2.4e-19 Score=133.70 Aligned_cols=85 Identities=21% Similarity=0.359 Sum_probs=79.5
Q ss_pred CCCCCCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhh----ccCcCCcccchhhhhccc-----CCCCCC-CCChHHH
Q 028843 15 ASGKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATES----GLNRCGKSCRLRWLNYLR-----PNIKRG-NISDDEE 84 (203)
Q Consensus 15 ~~~~~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~----~~~Rt~~qcr~Rw~~~l~-----~~~~~~-~WT~eEd 84 (203)
....+..++++||+|||+.|+++|.+||.++|..|+..+ + +||..+|++||.++++ |.+++| +|+++|+
T Consensus 9 ~~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~ 87 (121)
T 2juh_A 9 SELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLL 87 (121)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHH
T ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHH
Confidence 446688999999999999999999999988999999985 5 9999999999999998 999999 9999999
Q ss_pred HHHHHHHHHhCCchhh
Q 028843 85 DLILRLHKLLGSRWSL 100 (203)
Q Consensus 85 ~~Ll~~v~~~G~~W~~ 100 (203)
.+|+.++..+|++|++
T Consensus 88 ~rv~~~h~~~gn~~~~ 103 (121)
T 2juh_A 88 DRVLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHccchhc
Confidence 9999999999999987
No 18
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=4.7e-19 Score=117.07 Aligned_cols=57 Identities=30% Similarity=0.591 Sum_probs=54.0
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccCCCC
Q 028843 18 KNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIK 75 (203)
Q Consensus 18 ~~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~ 75 (203)
.|.+++++||+|||++|+++|.+||.++|..||..|+ +||+.||+.||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence 3788999999999999999999999878999999999 99999999999999999875
No 19
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=4.5e-19 Score=119.38 Aligned_cols=60 Identities=27% Similarity=0.371 Sum_probs=57.0
Q ss_pred cccCCCCCCCCChHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhcccccCCC
Q 028843 69 YLRPNIKRGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKH 129 (203)
Q Consensus 69 ~l~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~~~~~~ 129 (203)
+|+|.+++++||+|||++|+++|..||.+|..||+ ++|||+.||++||.++|++.+++..
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 68999999999999999999999999999999999 8899999999999999999887654
No 20
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=1.1e-18 Score=115.18 Aligned_cols=56 Identities=21% Similarity=0.446 Sum_probs=53.0
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhccccc
Q 028843 71 RPNIKRGNISDDEEDLILRLHKLLG-SRWSLIAGRLPGRTDNEIKNYWNSHLSKKIN 126 (203)
Q Consensus 71 ~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~~~ 126 (203)
+|.+++++||+|||++|+++|.+|| ++|+.||..|||||+.||++||+++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 5788999999999999999999999 6999999999999999999999999998764
No 21
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.75 E-value=5.2e-19 Score=113.57 Aligned_cols=52 Identities=42% Similarity=0.862 Sum_probs=49.4
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccCC
Q 028843 21 VNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPN 73 (203)
Q Consensus 21 ~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~ 73 (203)
+++|+||+|||++|+++|.+||..+|..||..|+ +||+.||+.||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 4789999999999999999999778999999998 999999999999999984
No 22
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.75 E-value=1.6e-18 Score=118.66 Aligned_cols=65 Identities=18% Similarity=0.241 Sum_probs=58.9
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhcccccCCCCCCCCC
Q 028843 70 LRPNIKRGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTPQQP 135 (203)
Q Consensus 70 l~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~~~~~~~t~~e~ 135 (203)
.+|.+++++||+|||++|+++|.+||.+|..||++|||||+.||++||+.++++.++. +..++++
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~~~ 67 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKETP 67 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCCCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCCcc
Confidence 5789999999999999999999999999999999999999999999999999998777 4444443
No 23
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.75 E-value=8.7e-19 Score=118.96 Aligned_cols=66 Identities=20% Similarity=0.356 Sum_probs=59.8
Q ss_pred CCCCCCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcc-CcCCcccchhhhhcccCCCCCCCCC
Q 028843 15 ASGKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGL-NRCGKSCRLRWLNYLRPNIKRGNIS 80 (203)
Q Consensus 15 ~~~~~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~-~Rt~~qcr~Rw~~~l~~~~~~~~WT 80 (203)
+..++..++++||+|||++|+++|.+||.++|..||..|+. +||+.||++||.++|+|.+.++..+
T Consensus 2 ~~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 2 PEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp -CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 34568889999999999999999999998899999999975 8999999999999999999887754
No 24
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.74 E-value=3.3e-18 Score=127.69 Aligned_cols=80 Identities=23% Similarity=0.310 Sum_probs=73.9
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhh----ccCcCCcccchhhhhcc-----cCCCCCCCCChHH-HHH
Q 028843 17 GKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATES----GLNRCGKSCRLRWLNYL-----RPNIKRGNISDDE-EDL 86 (203)
Q Consensus 17 ~~~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~----~~~Rt~~qcr~Rw~~~l-----~~~~~~~~WT~eE-d~~ 86 (203)
.....++++||+|||+.|+++|++||.++|..|+..+ + +||+.||++||.+++ +|.+++|.|+++| +.+
T Consensus 25 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~ 103 (122)
T 2roh_A 25 FGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDR 103 (122)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHH
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHH
Confidence 4567789999999999999999999988999999975 5 899999999999999 7999999999999 899
Q ss_pred HHHHHHHhCCc
Q 028843 87 ILRLHKLLGSR 97 (203)
Q Consensus 87 Ll~~v~~~G~~ 97 (203)
|++++..||++
T Consensus 104 v~~~h~~~g~~ 114 (122)
T 2roh_A 104 VLAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHHhhH
Confidence 99999999964
No 25
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.74 E-value=8e-19 Score=112.65 Aligned_cols=52 Identities=37% Similarity=0.742 Sum_probs=48.2
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccCC
Q 028843 21 VNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPN 73 (203)
Q Consensus 21 ~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~ 73 (203)
+++++||+|||++|+++|.+||..+|..||..|+ +||+.||+.||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 4789999999999999999999778999999999 999999999999999985
No 26
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.73 E-value=3.7e-18 Score=109.52 Aligned_cols=51 Identities=25% Similarity=0.558 Sum_probs=47.1
Q ss_pred CCCCCCChHHHHHHHHHHHHhCC-chhhhhccCCCCCHHHHHHHHHHhhccc
Q 028843 74 IKRGNISDDEEDLILRLHKLLGS-RWSLIAGRLPGRTDNEIKNYWNSHLSKK 124 (203)
Q Consensus 74 ~~~~~WT~eEd~~Ll~~v~~~G~-~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~ 124 (203)
+++++||+|||.+|+++|.+||. +|+.||+.|||||+.||++||.++|+|.
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 46899999999999999999997 9999999999999999999999999873
No 27
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.73 E-value=5.1e-18 Score=108.90 Aligned_cols=51 Identities=29% Similarity=0.704 Sum_probs=48.0
Q ss_pred CCCCCCChHHHHHHHHHHHHhCC-chhhhhccCCCCCHHHHHHHHHHhhccc
Q 028843 74 IKRGNISDDEEDLILRLHKLLGS-RWSLIAGRLPGRTDNEIKNYWNSHLSKK 124 (203)
Q Consensus 74 ~~~~~WT~eEd~~Ll~~v~~~G~-~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~ 124 (203)
+++++||+|||++|+++|.+||. +|..||..|+|||+.||++||.++|+|.
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 47899999999999999999996 6999999999999999999999999873
No 28
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.72 E-value=1.4e-17 Score=112.93 Aligned_cols=61 Identities=20% Similarity=0.210 Sum_probs=56.4
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHHhC-CchhhhhccCC--CCCHHHHHHHHHHhhcccccCCCC
Q 028843 70 LRPNIKRGNISDDEEDLILRLHKLLG-SRWSLIAGRLP--GRTDNEIKNYWNSHLSKKINHKHK 130 (203)
Q Consensus 70 l~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~l~--~Rt~~q~k~Rw~~~l~~~~~~~~~ 130 (203)
..+..++++||+|||++|+++|.+|| ++|+.||..|+ |||+.||++||.++|++.+.+...
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~ 67 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDS 67 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCC
Confidence 45677899999999999999999999 69999999999 999999999999999999887654
No 29
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.70 E-value=6.5e-18 Score=112.98 Aligned_cols=57 Identities=21% Similarity=0.443 Sum_probs=49.7
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhc-cCcCCcccchhhhhcccCCCC
Q 028843 19 NVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESG-LNRCGKSCRLRWLNYLRPNIK 75 (203)
Q Consensus 19 ~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~-~~Rt~~qcr~Rw~~~l~~~~~ 75 (203)
...++++||+|||++|+++|.+||.++|..||+.++ .+||+.||++||.++++|.++
T Consensus 7 ~~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 7 NITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 456789999999999999999999889999999864 389999999999999998764
No 30
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=1.4e-17 Score=110.06 Aligned_cols=55 Identities=22% Similarity=0.459 Sum_probs=51.6
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccCCC
Q 028843 19 NVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNI 74 (203)
Q Consensus 19 ~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~ 74 (203)
+.+.+++||+|||++|+++|.+||.++|..||+.|+ +||+.||+.||.++|.+..
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~~ 58 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGPS 58 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCCC
Confidence 678999999999999999999999889999999999 9999999999999998653
No 31
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=3.2e-17 Score=108.25 Aligned_cols=54 Identities=17% Similarity=0.190 Sum_probs=50.4
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhccc
Q 028843 71 RPNIKRGNISDDEEDLILRLHKLLG-SRWSLIAGRLPGRTDNEIKNYWNSHLSKK 124 (203)
Q Consensus 71 ~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~ 124 (203)
++.+.+++||+|||++|+++|..|| ++|..||++||+||+.||++||.++|.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 4678999999999999999999999 79999999999999999999999988754
No 32
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.67 E-value=6.6e-17 Score=104.11 Aligned_cols=49 Identities=22% Similarity=0.270 Sum_probs=46.3
Q ss_pred CCCCCChHHHHHHHHHHHHhC-CchhhhhccCC--CCCHHHHHHHHHHhhcc
Q 028843 75 KRGNISDDEEDLILRLHKLLG-SRWSLIAGRLP--GRTDNEIKNYWNSHLSK 123 (203)
Q Consensus 75 ~~~~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~l~--~Rt~~q~k~Rw~~~l~~ 123 (203)
++++||+|||++|+++|..|| ++|+.||..|| |||+.||++||.++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 478999999999999999999 69999999999 99999999999998864
No 33
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.66 E-value=9.7e-17 Score=107.27 Aligned_cols=53 Identities=23% Similarity=0.399 Sum_probs=48.0
Q ss_pred CCCCCCChHHHHHHHHHHHHhC-CchhhhhccCC--CCCHHHHHHHHHHhhccccc
Q 028843 74 IKRGNISDDEEDLILRLHKLLG-SRWSLIAGRLP--GRTDNEIKNYWNSHLSKKIN 126 (203)
Q Consensus 74 ~~~~~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~l~--~Rt~~q~k~Rw~~~l~~~~~ 126 (203)
.++++||+|||++|+++|.+|| .+|+.||+.+| |||+.||++||.+++++.++
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 4789999999999999999999 58999999865 99999999999999987654
No 34
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.66 E-value=6e-17 Score=106.24 Aligned_cols=52 Identities=25% Similarity=0.426 Sum_probs=47.8
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcc
Q 028843 19 NVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYL 70 (203)
Q Consensus 19 ~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l 70 (203)
..+.+++||++||++|+++|.+||.++|..||+.|+.+||+.||+.||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 4566899999999999999999998899999999986899999999999875
No 35
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.3e-16 Score=109.84 Aligned_cols=61 Identities=16% Similarity=0.134 Sum_probs=55.9
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhC------CchhhhhccCCCCCHHHHHHHHHHhhcccccCCCCC
Q 028843 71 RPNIKRGNISDDEEDLILRLHKLLG------SRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKT 131 (203)
Q Consensus 71 ~~~~~~~~WT~eEd~~Ll~~v~~~G------~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~~~~~~~t 131 (203)
+|.+.+++||+|||++|+++|..|| .+|..||.+|+|||+.||++||+++|.+.++.+...
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~~~ 69 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGIPV 69 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 5788999999999999999999999 789999999999999999999999999887766543
No 36
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=6.3e-17 Score=111.43 Aligned_cols=60 Identities=28% Similarity=0.458 Sum_probs=55.6
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCC-----CChhhhhhhhccCcCCcccchhhhhcccCCCCCCC
Q 028843 18 KNVVNRGAWTAEEDRKLTEYIEIHGA-----KRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRGN 78 (203)
Q Consensus 18 ~~~~~k~~WT~eED~~L~~~v~~~g~-----~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~ 78 (203)
+|.++++.||+|||++|+++|.+||. .+|..||..|+ +||+.||+.||+++|.+.++.|.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence 58899999999999999999999996 68999999999 99999999999999998877664
No 37
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=3.8e-17 Score=109.83 Aligned_cols=58 Identities=19% Similarity=0.390 Sum_probs=52.8
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccCCCCCC
Q 028843 17 GKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRG 77 (203)
Q Consensus 17 ~~~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~ 77 (203)
-.|.+++++||+|||++|+++|..+|. +|..||. ++ |||+.||+.||.++|+|.++++
T Consensus 3 L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 3 SGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCC
Confidence 358899999999999999999999995 8999999 77 8999999999999999877654
No 38
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.64 E-value=9.2e-17 Score=103.42 Aligned_cols=50 Identities=26% Similarity=0.480 Sum_probs=46.5
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcc-CcCCcccchhhhhccc
Q 028843 22 NRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGL-NRCGKSCRLRWLNYLR 71 (203)
Q Consensus 22 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~-~Rt~~qcr~Rw~~~l~ 71 (203)
++++||+|||++|+++|.+||.++|..||..|+. +||+.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 5799999999999999999998899999999975 6999999999999875
No 39
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.63 E-value=1.2e-16 Score=109.32 Aligned_cols=59 Identities=20% Similarity=0.324 Sum_probs=54.0
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccCCCCC
Q 028843 16 SGKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKR 76 (203)
Q Consensus 16 ~~~~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~ 76 (203)
+..|.+++++||+|||++|+++|..||. +|..||..|+ +||+.||+.||.+++.+..+.
T Consensus 2 s~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 2 SSGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 4458899999999999999999999995 8999999999 999999999999999876655
No 40
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.63 E-value=3.6e-16 Score=102.52 Aligned_cols=50 Identities=26% Similarity=0.347 Sum_probs=46.4
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhC-CchhhhhccCC-CCCHHHHHHHHHHhh
Q 028843 72 PNIKRGNISDDEEDLILRLHKLLG-SRWSLIAGRLP-GRTDNEIKNYWNSHL 121 (203)
Q Consensus 72 ~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~l~-~Rt~~q~k~Rw~~~l 121 (203)
..+.+++||++||++|+++|.+|| ++|..||++|+ +||+.||++||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 346689999999999999999999 89999999999 999999999999865
No 41
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.36 E-value=1.2e-16 Score=113.56 Aligned_cols=56 Identities=20% Similarity=0.209 Sum_probs=52.9
Q ss_pred cccCCCCCCCCChHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhccc
Q 028843 69 YLRPNIKRGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKK 124 (203)
Q Consensus 69 ~l~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~ 124 (203)
.+.|.+++|+||+|||++|+++|..||++|+.||..|||||+.||++||++++++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 46788999999999999999999999999999999999999999999999988764
No 42
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.57 E-value=2.7e-16 Score=117.17 Aligned_cols=82 Identities=16% Similarity=0.220 Sum_probs=71.0
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHHhCC-chhhhhcc----CCCCCHHHHHHHHHHhhc-----ccccCC-CCCCCCCCch
Q 028843 70 LRPNIKRGNISDDEEDLILRLHKLLGS-RWSLIAGR----LPGRTDNEIKNYWNSHLS-----KKINHK-HKTPQQPQQP 138 (203)
Q Consensus 70 l~~~~~~~~WT~eEd~~Ll~~v~~~G~-~W~~Ia~~----l~~Rt~~q~k~Rw~~~l~-----~~~~~~-~~t~~e~~~l 138 (203)
+.+..++++||.|||+.|+++|.+||. +|+.|++. |++||+.+|++||+++++ +.++++ +++.++...+
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv 90 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV 90 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence 456778999999999999999999996 99999988 489999999999999998 777775 5555555778
Q ss_pred hhhhhhCCCCCCc
Q 028843 139 ATTRLKVPENTSE 151 (203)
Q Consensus 139 ~~~~~~~~~~~s~ 151 (203)
+.+...+|++|+.
T Consensus 91 ~~~h~~~gn~~~~ 103 (121)
T 2juh_A 91 LAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHccchhc
Confidence 8888999998887
No 43
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.56 E-value=3e-15 Score=122.61 Aligned_cols=78 Identities=18% Similarity=0.284 Sum_probs=67.8
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhCCc------hhhhhccCCCCCHHHHHHHHHHhhcccccCCCCCCCCCCchhhhhhhC
Q 028843 72 PNIKRGNISDDEEDLILRLHKLLGSR------WSLIAGRLPGRTDNEIKNYWNSHLSKKINHKHKTPQQPQQPATTRLKV 145 (203)
Q Consensus 72 ~~~~~~~WT~eEd~~Ll~~v~~~G~~------W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~~~~~~~t~~e~~~l~~~~~~~ 145 (203)
+.+++++||+|||++|+++|.+||++ |..||+.|||||++|||+||+.+|++.++.. |+.+++..|+....
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~v-y~~ded~~Li~d~~-- 80 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV-YEVDKFGKLVRDDD-- 80 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCE-ECBCTTSCBCBCTT--
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccc-cccCcchhhhhccC--
Confidence 45788999999999999999999975 9999999999999999999999999999844 99999988877765
Q ss_pred CCCCCccc
Q 028843 146 PENTSEIA 153 (203)
Q Consensus 146 ~~~~s~i~ 153 (203)
|+ |..|+
T Consensus 81 Gn-~ikis 87 (246)
T 1ign_A 81 GN-LIKTK 87 (246)
T ss_dssp SC-BCEES
T ss_pred CC-ceeee
Confidence 66 88888
No 44
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.52 E-value=1.3e-14 Score=99.13 Aligned_cols=52 Identities=12% Similarity=0.204 Sum_probs=48.0
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhC----CchhhhhccCCCCCHHHHHHHHHHhhcc
Q 028843 72 PNIKRGNISDDEEDLILRLHKLLG----SRWSLIAGRLPGRTDNEIKNYWNSHLSK 123 (203)
Q Consensus 72 ~~~~~~~WT~eEd~~Ll~~v~~~G----~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~ 123 (203)
+...+++||.+||.+|++++..|| .+|..||.+|||||+.||++||..++..
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 456789999999999999999999 6899999999999999999999988764
No 45
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.51 E-value=9.9e-15 Score=99.75 Aligned_cols=59 Identities=22% Similarity=0.256 Sum_probs=47.7
Q ss_pred CCCCCCCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccCCCCC
Q 028843 14 DASGKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKR 76 (203)
Q Consensus 14 ~~~~~~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~ 76 (203)
-..-.|.+++|+||+|||++|+++|.+||. .|..||+.| |||+.||+.||.. |....+.
T Consensus 14 ~~~ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l--gRt~~q~knRw~~-L~~~~~~ 72 (73)
T 2llk_A 14 LYFQGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL--GRSASSVKDRCRL-MKDTCNT 72 (73)
T ss_dssp -----CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH--TSCHHHHHHHHHH-CSCCCSC
T ss_pred eeecCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh--CCCHHHHHHHHHH-HHHHccC
Confidence 345568999999999999999999999995 599999999 7999999999985 5544443
No 46
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.51 E-value=1.3e-14 Score=100.72 Aligned_cols=52 Identities=27% Similarity=0.521 Sum_probs=48.7
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhc
Q 028843 16 SGKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNY 69 (203)
Q Consensus 16 ~~~~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~ 69 (203)
+.+....+++||+|||++|+++|.+|| .+|..||.+|+ +||+.||+.||.++
T Consensus 11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp CCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred CccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 456777889999999999999999999 88999999999 99999999999997
No 47
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.51 E-value=8.5e-15 Score=109.26 Aligned_cols=79 Identities=18% Similarity=0.291 Sum_probs=67.2
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhCC-chhhhhcc----CCCCCHHHHHHHHHHhh-----cccccCCCCCCCC-CCchh
Q 028843 71 RPNIKRGNISDDEEDLILRLHKLLGS-RWSLIAGR----LPGRTDNEIKNYWNSHL-----SKKINHKHKTPQQ-PQQPA 139 (203)
Q Consensus 71 ~~~~~~~~WT~eEd~~Ll~~v~~~G~-~W~~Ia~~----l~~Rt~~q~k~Rw~~~l-----~~~~~~~~~t~~e-~~~l~ 139 (203)
....++++||.|||+.|+++|.+||. +|+.|++. |++||+.+||+||++++ .+.++++.+++++ ...++
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~ 105 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL 105 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence 34557899999999999999999995 99999986 48999999999999999 6788888788777 56777
Q ss_pred hhhhhCCCCC
Q 028843 140 TTRLKVPENT 149 (203)
Q Consensus 140 ~~~~~~~~~~ 149 (203)
.+...+|+..
T Consensus 106 ~~h~~~g~~~ 115 (122)
T 2roh_A 106 AAQAYWSVDS 115 (122)
T ss_dssp HHHHHHHSSC
T ss_pred HHHHHHhhHH
Confidence 7777777643
No 48
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.51 E-value=2.2e-14 Score=100.44 Aligned_cols=69 Identities=25% Similarity=0.472 Sum_probs=58.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhhh----hccCcCCcccchhhhhcc-----cCCCCCC-CCChHHHHHHHHHHHH
Q 028843 24 GAWTAEEDRKLTEYIEIHGAKRWKNVATE----SGLNRCGKSCRLRWLNYL-----RPNIKRG-NISDDEEDLILRLHKL 93 (203)
Q Consensus 24 ~~WT~eED~~L~~~v~~~g~~~W~~Ia~~----~~~~Rt~~qcr~Rw~~~l-----~~~~~~~-~WT~eEd~~Ll~~v~~ 93 (203)
++||+|||+.|+++|.+||.++|..|++. |+ +||+.+|++||.+++ +|.+++| +..++...+++.+...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999998899999996 67 999999999999987 5776655 6677777878777643
No 49
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.50 E-value=1.9e-14 Score=104.81 Aligned_cols=80 Identities=20% Similarity=0.275 Sum_probs=66.2
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhc---cCcCCcccchhhhhcc-----cCCCCCCCCChHHHHH-
Q 028843 16 SGKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESG---LNRCGKSCRLRWLNYL-----RPNIKRGNISDDEEDL- 86 (203)
Q Consensus 16 ~~~~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~---~~Rt~~qcr~Rw~~~l-----~~~~~~~~WT~eEd~~- 86 (203)
..++..++++||+|||+.|+.+|.+||.++|..|+..++ .+||..+|++||.+++ +|.+++|.-++.|-..
T Consensus 6 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~r 85 (105)
T 2aje_A 6 EDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNR 85 (105)
T ss_dssp ---CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHH
Confidence 456788999999999999999999999889999999752 3999999999999998 6899999888777544
Q ss_pred HHHHHHHhC
Q 028843 87 ILRLHKLLG 95 (203)
Q Consensus 87 Ll~~v~~~G 95 (203)
++++...+|
T Consensus 86 v~~~~~~~~ 94 (105)
T 2aje_A 86 VLNAHGYWT 94 (105)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666554
No 50
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.48 E-value=2.1e-14 Score=99.71 Aligned_cols=49 Identities=14% Similarity=0.209 Sum_probs=45.8
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHh
Q 028843 72 PNIKRGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSH 120 (203)
Q Consensus 72 ~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~~Rt~~q~k~Rw~~~ 120 (203)
....+++||+|||.+|+++|.+||.+|..||++|++||+.||++||.++
T Consensus 14 ~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 14 GASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SSCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred ccccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 3457889999999999999999999999999999999999999999876
No 51
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.47 E-value=2.4e-14 Score=97.87 Aligned_cols=56 Identities=13% Similarity=0.288 Sum_probs=49.9
Q ss_pred CCCCCCCccCCCCHHHHHHHHHHHHHhC---CCChhhhhhhhccCcCCcccchhhhhccc
Q 028843 15 ASGKNVVNRGAWTAEEDRKLTEYIEIHG---AKRWKNVATESGLNRCGKSCRLRWLNYLR 71 (203)
Q Consensus 15 ~~~~~~~~k~~WT~eED~~L~~~v~~~g---~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~ 71 (203)
.-.++...+++||++||.+|+.+|..|| ..+|..||..|| |||..||+.||.+++.
T Consensus 10 ~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 10 RKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp CCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred cccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 3456778899999999999999999999 357999999999 9999999999998654
No 52
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.17 E-value=7.8e-15 Score=104.20 Aligned_cols=56 Identities=25% Similarity=0.490 Sum_probs=51.6
Q ss_pred CCCCCCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccC
Q 028843 15 ASGKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRP 72 (203)
Q Consensus 15 ~~~~~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~ 72 (203)
.+..+.+++|+||+|||++|+++|..||. +|..||..|+ |||..||+.||.++|..
T Consensus 8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 8 SSGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR 63 (89)
Confidence 45568999999999999999999999995 7999999999 99999999999998764
No 53
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.43 E-value=2.5e-13 Score=98.85 Aligned_cols=52 Identities=21% Similarity=0.319 Sum_probs=47.2
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhCC-chhhhhccC----CCCCHHHHHHHHHHhhc
Q 028843 71 RPNIKRGNISDDEEDLILRLHKLLGS-RWSLIAGRL----PGRTDNEIKNYWNSHLS 122 (203)
Q Consensus 71 ~~~~~~~~WT~eEd~~Ll~~v~~~G~-~W~~Ia~~l----~~Rt~~q~k~Rw~~~l~ 122 (203)
.+..++++||+|||+.|+++|.+||. +|+.|++.+ ++||+.+|++||+++++
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk 64 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVH 64 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 34568899999999999999999996 999999965 89999999999999995
No 54
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.42 E-value=3e-13 Score=88.79 Aligned_cols=51 Identities=18% Similarity=0.344 Sum_probs=46.9
Q ss_pred CCCCCCChHHHHHHHHHHHHhCCchhhhh---ccCCCCCHHHHHHHHHHhhccc
Q 028843 74 IKRGNISDDEEDLILRLHKLLGSRWSLIA---GRLPGRTDNEIKNYWNSHLSKK 124 (203)
Q Consensus 74 ~~~~~WT~eEd~~Ll~~v~~~G~~W~~Ia---~~l~~Rt~~q~k~Rw~~~l~~~ 124 (203)
-++.+||+||++.|++.|++||.+|+.|+ .++++||..++++||+++.+..
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhcc
Confidence 36789999999999999999999999999 6889999999999999987753
No 55
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.42 E-value=1.7e-13 Score=95.88 Aligned_cols=46 Identities=24% Similarity=0.414 Sum_probs=43.3
Q ss_pred CCCChHHHHHHHHHHHHhCC-chhhhhcc----CCCCCHHHHHHHHHHhhc
Q 028843 77 GNISDDEEDLILRLHKLLGS-RWSLIAGR----LPGRTDNEIKNYWNSHLS 122 (203)
Q Consensus 77 ~~WT~eEd~~Ll~~v~~~G~-~W~~Ia~~----l~~Rt~~q~k~Rw~~~l~ 122 (203)
++||+|||+.|+++|.+||. +|+.|++. |+|||+.+||+||+++++
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk 51 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVH 51 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHH
Confidence 48999999999999999996 99999985 899999999999999985
No 56
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.30 E-value=1.9e-12 Score=92.32 Aligned_cols=50 Identities=22% Similarity=0.333 Sum_probs=45.3
Q ss_pred CCCCCChHHHHHHHHHHHHhC----CchhhhhccCCCCCHHHHHHHHHHhhccc
Q 028843 75 KRGNISDDEEDLILRLHKLLG----SRWSLIAGRLPGRTDNEIKNYWNSHLSKK 124 (203)
Q Consensus 75 ~~~~WT~eEd~~Ll~~v~~~G----~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~ 124 (203)
.+++||.|||.+|++++..|| ++|..||..|||||+++|++||..++...
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999999996 67999999999999999999999987653
No 57
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.20 E-value=5.2e-12 Score=90.10 Aligned_cols=48 Identities=19% Similarity=0.441 Sum_probs=43.3
Q ss_pred ccCCCCHHHHHHHHHHHHHhC---CCChhhhhhhhccCcCCcccchhhhhcc
Q 028843 22 NRGAWTAEEDRKLTEYIEIHG---AKRWKNVATESGLNRCGKSCRLRWLNYL 70 (203)
Q Consensus 22 ~k~~WT~eED~~L~~~v~~~g---~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l 70 (203)
.++.||+|||++|.+++..|| ...|..||..|| |||..||+.||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 357899999999999999997 457999999999 999999999999864
No 58
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=6.7e-11 Score=77.97 Aligned_cols=48 Identities=15% Similarity=0.119 Sum_probs=44.2
Q ss_pred CCCCCChHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhc
Q 028843 75 KRGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLS 122 (203)
Q Consensus 75 ~~~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~ 122 (203)
..++||++|+.++++++..||.+|..||..||+||..+|..+|+...+
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 457999999999999999999999999999999999999999986543
No 59
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=99.10 E-value=6.4e-11 Score=84.10 Aligned_cols=66 Identities=18% Similarity=0.265 Sum_probs=58.8
Q ss_pred CcccchhhhhcccCCCCCCCCChHHHHHHHHHHHHhCCchhhhhccC-----CCCCHHHHHHHHHHhhcccccCC
Q 028843 59 GKSCRLRWLNYLRPNIKRGNISDDEEDLILRLHKLLGSRWSLIAGRL-----PGRTDNEIKNYWNSHLSKKINHK 128 (203)
Q Consensus 59 ~~qcr~Rw~~~l~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l-----~~Rt~~q~k~Rw~~~l~~~~~~~ 128 (203)
+.=+.++|.++|.+ ++||.||+..|++++++||.+|..|+..+ ++||..++|+||..+.+..+...
T Consensus 17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 35678999999976 89999999999999999999999999998 58999999999999887665443
No 60
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1.5e-10 Score=76.27 Aligned_cols=53 Identities=17% Similarity=0.200 Sum_probs=46.8
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcc
Q 028843 16 SGKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYL 70 (203)
Q Consensus 16 ~~~~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l 70 (203)
+.+.....++||++|++++.+++..|| .+|..||..|+ +||..||..+|....
T Consensus 5 ~~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~-~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 5 SSGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLE-RKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCT-TSCHHHHHHHHHHHT
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence 445556779999999999999999999 68999999999 999999999997653
No 61
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.02 E-value=1.4e-10 Score=76.00 Aligned_cols=50 Identities=16% Similarity=0.221 Sum_probs=44.4
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCChhhhhh---hhccCcCCcccchhhhhccc
Q 028843 20 VVNRGAWTAEEDRKLTEYIEIHGAKRWKNVAT---ESGLNRCGKSCRLRWLNYLR 71 (203)
Q Consensus 20 ~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~---~~~~~Rt~~qcr~Rw~~~l~ 71 (203)
..++++||+|||+.|++.|++||. +|..|+. .++ +||...+.+||.+...
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence 347899999999999999999996 8999994 555 9999999999998765
No 62
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.93 E-value=1.4e-09 Score=73.87 Aligned_cols=51 Identities=16% Similarity=0.223 Sum_probs=45.5
Q ss_pred CCCCCCCChHHHHHHHHHHHHhC----CchhhhhccCCCCCHHHHHHHHHHhhccc
Q 028843 73 NIKRGNISDDEEDLILRLHKLLG----SRWSLIAGRLPGRTDNEIKNYWNSHLSKK 124 (203)
Q Consensus 73 ~~~~~~WT~eEd~~Ll~~v~~~G----~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~ 124 (203)
....++||.||+++|.+++..|+ .+|..||..+ |||..+|+.||..+....
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV 59 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc
Confidence 34678999999999999999997 5799999998 999999999999886653
No 63
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.92 E-value=1.8e-09 Score=87.82 Aligned_cols=50 Identities=12% Similarity=0.225 Sum_probs=46.3
Q ss_pred CCCCCCChHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhcc
Q 028843 74 IKRGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSK 123 (203)
Q Consensus 74 ~~~~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~ 123 (203)
...++||+||+.++++++..||.+|..||+.+++||..||+++|+++.++
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 35679999999999999999999999999999999999999999987664
No 64
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.82 E-value=1.8e-09 Score=73.37 Aligned_cols=50 Identities=20% Similarity=0.279 Sum_probs=43.3
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCC---CChhhhhhhhccCcCCcccchhhhhccc
Q 028843 20 VVNRGAWTAEEDRKLTEYIEIHGA---KRWKNVATESGLNRCGKSCRLRWLNYLR 71 (203)
Q Consensus 20 ~~~k~~WT~eED~~L~~~v~~~g~---~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~ 71 (203)
....+.||.|||++|.+++.+|+. ..|..||..+ |||..+|+.||..+..
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 345678999999999999999983 5699999997 5999999999987654
No 65
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.80 E-value=8.5e-09 Score=69.98 Aligned_cols=55 Identities=18% Similarity=0.200 Sum_probs=46.9
Q ss_pred CCCCCChHHHHHHHHHHHHhC----CchhhhhccCCCCCHHHHHHHHHHhhcccccCCC
Q 028843 75 KRGNISDDEEDLILRLHKLLG----SRWSLIAGRLPGRTDNEIKNYWNSHLSKKINHKH 129 (203)
Q Consensus 75 ~~~~WT~eEd~~Ll~~v~~~G----~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~~~~~~ 129 (203)
....||.+|+.+|.+++..|+ .+|..||..+||||..+|+.||..+++..-..+.
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~~s~~~ 65 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGKGSQKH 65 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSSCCCCS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhccccccc
Confidence 346899999999999999997 4699999999999999999999988665544433
No 66
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.74 E-value=4.6e-09 Score=68.65 Aligned_cols=48 Identities=27% Similarity=0.441 Sum_probs=43.1
Q ss_pred cCCCCHHHHHHHHHHHHHh--------CCCChhhhhh-hhccCcCCcccchhhhhccc
Q 028843 23 RGAWTAEEDRKLTEYIEIH--------GAKRWKNVAT-ESGLNRCGKSCRLRWLNYLR 71 (203)
Q Consensus 23 k~~WT~eED~~L~~~v~~~--------g~~~W~~Ia~-~~~~~Rt~~qcr~Rw~~~l~ 71 (203)
|.+||+|||+.|+++|.++ |..-|+.+|. .++ ++|..+||+||.++|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence 6789999999999999999 4445999999 787 9999999999999875
No 67
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.72 E-value=8.8e-09 Score=69.91 Aligned_cols=48 Identities=23% Similarity=0.441 Sum_probs=43.0
Q ss_pred cCCCCHHHHHHHHHHHHHhCC---CChhhhhhhhccCcCCcccchhhhhccc
Q 028843 23 RGAWTAEEDRKLTEYIEIHGA---KRWKNVATESGLNRCGKSCRLRWLNYLR 71 (203)
Q Consensus 23 k~~WT~eED~~L~~~v~~~g~---~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~ 71 (203)
...||++|+++|.+++..|+. ..|..||..+| +||..+|+.||..++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence 467999999999999999974 46999999999 9999999999987654
No 68
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.71 E-value=8.6e-09 Score=92.52 Aligned_cols=46 Identities=13% Similarity=0.258 Sum_probs=42.6
Q ss_pred CCCChHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhc
Q 028843 77 GNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLS 122 (203)
Q Consensus 77 ~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~ 122 (203)
..||.+|-.++++++.+||.+|..||..+++||..||+++|.++-+
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999986443
No 69
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.66 E-value=3.4e-08 Score=64.47 Aligned_cols=47 Identities=23% Similarity=0.362 Sum_probs=42.5
Q ss_pred CCCCChHHHHHHHHHHHHh--------CCc-hhhhhc-cCCCCCHHHHHHHHHHhhc
Q 028843 76 RGNISDDEEDLILRLHKLL--------GSR-WSLIAG-RLPGRTDNEIKNYWNSHLS 122 (203)
Q Consensus 76 ~~~WT~eEd~~Ll~~v~~~--------G~~-W~~Ia~-~l~~Rt~~q~k~Rw~~~l~ 122 (203)
+.+||.|||+.|++.|.+| |+. |..+++ .+|++|-.+||+||.+.|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 433 999999 7999999999999998775
No 70
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.64 E-value=1.9e-08 Score=81.69 Aligned_cols=51 Identities=22% Similarity=0.332 Sum_probs=46.5
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhccc
Q 028843 19 NVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLR 71 (203)
Q Consensus 19 ~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~ 71 (203)
.....++||+||+.++++++.+|| ++|..||+.++ +||..||+.+|.++.+
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 345578999999999999999999 78999999999 9999999999998765
No 71
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.45 E-value=2.9e-07 Score=78.39 Aligned_cols=99 Identities=17% Similarity=0.199 Sum_probs=79.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcc---------------------------------
Q 028843 24 GAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYL--------------------------------- 70 (203)
Q Consensus 24 ~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l--------------------------------- 70 (203)
+.||..+...++.++.+||..+|..||..|+ ++|...++..+.-+.
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5699999999999999999989999999998 899877743221110
Q ss_pred -----------------cCCCCCCCCChHHHHHHHHHHHHhC----Cchhhhh------------ccCCCCCHHHHHHHH
Q 028843 71 -----------------RPNIKRGNISDDEEDLILRLHKLLG----SRWSLIA------------GRLPGRTDNEIKNYW 117 (203)
Q Consensus 71 -----------------~~~~~~~~WT~eEd~~Ll~~v~~~G----~~W~~Ia------------~~l~~Rt~~q~k~Rw 117 (203)
-+..+...||++||..||-++.+|| +.|..|. -++..||+.+|..|.
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 0223445899999999999999999 4699996 245679999999999
Q ss_pred HHhhcc
Q 028843 118 NSHLSK 123 (203)
Q Consensus 118 ~~~l~~ 123 (203)
..+++-
T Consensus 270 ~tLi~~ 275 (304)
T 1ofc_X 270 NTLITL 275 (304)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988763
No 72
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=5.8e-07 Score=59.30 Aligned_cols=49 Identities=14% Similarity=0.206 Sum_probs=44.9
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhCCchhhhhc-cCCCCCHHHHHHHHHH
Q 028843 71 RPNIKRGNISDDEEDLILRLHKLLGSRWSLIAG-RLPGRTDNEIKNYWNS 119 (203)
Q Consensus 71 ~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~Ia~-~l~~Rt~~q~k~Rw~~ 119 (203)
.|.+...+||+||-.+..+++..||.+|..|++ .||+||..+|...|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 366788899999999999999999999999998 6999999999988864
No 73
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.31 E-value=1.6e-07 Score=63.30 Aligned_cols=44 Identities=20% Similarity=0.254 Sum_probs=38.5
Q ss_pred CCCCCChHHHHHHHHHHHHhCC----chhhhhccCCCCCHHHHHHHHH
Q 028843 75 KRGNISDDEEDLILRLHKLLGS----RWSLIAGRLPGRTDNEIKNYWN 118 (203)
Q Consensus 75 ~~~~WT~eEd~~Ll~~v~~~G~----~W~~Ia~~l~~Rt~~q~k~Rw~ 118 (203)
..++||.+|+++|..++..|+. +|.+||..+||||..+|+.+|.
T Consensus 19 ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 19 SGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp ---CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 3568999999999999999974 6999999999999999999884
No 74
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.29 E-value=6.1e-07 Score=62.67 Aligned_cols=45 Identities=18% Similarity=0.349 Sum_probs=42.3
Q ss_pred CCChHHHHHHHHHHHHhCC---chhhhhccCCCCCHHHHHHHHHHhhc
Q 028843 78 NISDDEEDLILRLHKLLGS---RWSLIAGRLPGRTDNEIKNYWNSHLS 122 (203)
Q Consensus 78 ~WT~eEd~~Ll~~v~~~G~---~W~~Ia~~l~~Rt~~q~k~Rw~~~l~ 122 (203)
.||.|||..||...++-|. .|..||+.|.+|+++|+++||+.+++
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~ 82 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQ 82 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 5999999999999999996 79999999999999999999998765
No 75
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.57 E-value=1.2e-07 Score=62.68 Aligned_cols=44 Identities=14% Similarity=0.336 Sum_probs=41.2
Q ss_pred CCChHHHHHHHHHHHHhCC---chhhhhccCCCCCHHHHHHHHHHhhc
Q 028843 78 NISDDEEDLILRLHKLLGS---RWSLIAGRLPGRTDNEIKNYWNSHLS 122 (203)
Q Consensus 78 ~WT~eEd~~Ll~~v~~~G~---~W~~Ia~~l~~Rt~~q~k~Rw~~~l~ 122 (203)
.||.|||..||..+++-|. .|..||+.| +||++||.+||..+++
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 5999999999999999997 799999999 9999999999998765
No 76
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.24 E-value=1.4e-07 Score=63.51 Aligned_cols=44 Identities=18% Similarity=0.346 Sum_probs=39.0
Q ss_pred cCCCCHHHHHHHHHHHHHhCCC---ChhhhhhhhccCcCCcccchhhh
Q 028843 23 RGAWTAEEDRKLTEYIEIHGAK---RWKNVATESGLNRCGKSCRLRWL 67 (203)
Q Consensus 23 k~~WT~eED~~L~~~v~~~g~~---~W~~Ia~~~~~~Rt~~qcr~Rw~ 67 (203)
...||.+|+++|.+++..|+.. .|.+||..+| |||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 4579999999999999999743 6999999999 999999999985
No 77
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=1.1e-06 Score=57.86 Aligned_cols=52 Identities=13% Similarity=0.166 Sum_probs=45.6
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHHHhCCCChhhhhh-hhccCcCCcccchhhhhc
Q 028843 16 SGKNVVNRGAWTAEEDRKLTEYIEIHGAKRWKNVAT-ESGLNRCGKSCRLRWLNY 69 (203)
Q Consensus 16 ~~~~~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~-~~~~~Rt~~qcr~Rw~~~ 69 (203)
+..|......||+||-++..+++.+|| .+|..||+ .++ +|+..+|..-|...
T Consensus 2 ~~~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~-~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 2 SSGSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLP-NKETGELITFYYYW 54 (63)
T ss_dssp CCCCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCT-TSCHHHHHHHHHHH
T ss_pred CCCCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcC-CCcHHHHHHHHhcc
Confidence 345788889999999999999999999 68999999 488 99999998877643
No 78
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=98.11 E-value=2.9e-06 Score=59.90 Aligned_cols=60 Identities=20% Similarity=0.304 Sum_probs=50.1
Q ss_pred hhhhhcccCCCCCCCCChHHHHHHHHHHHHhCCchhhhhccCC-----CCCHHHHHHHHHHhhcccccC
Q 028843 64 LRWLNYLRPNIKRGNISDDEEDLILRLHKLLGSRWSLIAGRLP-----GRTDNEIKNYWNSHLSKKINH 127 (203)
Q Consensus 64 ~Rw~~~l~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~-----~Rt~~q~k~Rw~~~l~~~~~~ 127 (203)
+.|..+|. ...||.||...|+++++.|+-+|..|+..+. +||-.++|+||..+.++.+..
T Consensus 22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~ 86 (93)
T 4iej_A 22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 44555554 3689999999999999999999999998863 799999999999987766543
No 79
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.01 E-value=8.5e-06 Score=57.89 Aligned_cols=44 Identities=20% Similarity=0.153 Sum_probs=41.4
Q ss_pred CCCCChHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHH
Q 028843 76 RGNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNS 119 (203)
Q Consensus 76 ~~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~~Rt~~q~k~Rw~~ 119 (203)
...||++|..+..+++..||.+|..||..||+||..+|-..|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 45899999999999999999999999999999999999998874
No 80
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.00 E-value=1e-05 Score=54.36 Aligned_cols=45 Identities=20% Similarity=0.175 Sum_probs=41.4
Q ss_pred CCCCCChHHHHHHHHHHHHhCCchhhhhc-cCCCCCHHHHHHHHHH
Q 028843 75 KRGNISDDEEDLILRLHKLLGSRWSLIAG-RLPGRTDNEIKNYWNS 119 (203)
Q Consensus 75 ~~~~WT~eEd~~Ll~~v~~~G~~W~~Ia~-~l~~Rt~~q~k~Rw~~ 119 (203)
...+||++|-.+..+++..||.+|..|++ .||+||..+|...|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 34689999999999999999999999999 5999999999998874
No 81
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.96 E-value=5.5e-06 Score=74.41 Aligned_cols=50 Identities=22% Similarity=0.357 Sum_probs=44.9
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhccc
Q 028843 20 VVNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLR 71 (203)
Q Consensus 20 ~~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~ 71 (203)
.....+||.+|-+++++++.+|| ++|..||..++ +||..||+..|.++..
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~Vg-TKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYRR 426 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred cccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 34578999999999999999999 78999999999 9999999999987543
No 82
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.73 E-value=1.5e-05 Score=56.40 Aligned_cols=49 Identities=16% Similarity=0.240 Sum_probs=42.8
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhc----cCcCCcccchhhhhccc
Q 028843 22 NRGAWTAEEDRKLTEYIEIHGAKRWKNVATESG----LNRCGKSCRLRWLNYLR 71 (203)
Q Consensus 22 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~----~~Rt~~qcr~Rw~~~l~ 71 (203)
....||.||+..|.+++++|+ ..|..|+..+. .+||..+++.||..+.+
T Consensus 29 ~~~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 29 HDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp CBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 448999999999999999999 66999999993 27999999999987543
No 83
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.71 E-value=1.9e-05 Score=56.07 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=40.9
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhc
Q 028843 23 RGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNY 69 (203)
Q Consensus 23 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~ 69 (203)
...||++|.+++.+++..|| ++|..||..|+ +||..+|...|...
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~-~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLE-RKTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCT-TCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcC-CCCHHHHHHHHhcc
Confidence 57899999999999999999 68999999999 99999999887643
No 84
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.67 E-value=7e-05 Score=52.27 Aligned_cols=46 Identities=22% Similarity=0.401 Sum_probs=41.5
Q ss_pred CCCCHHHHHHHHHHHHHhCC--CChhhhhhhhccCcCCcccchhhhhcc
Q 028843 24 GAWTAEEDRKLTEYIEIHGA--KRWKNVATESGLNRCGKSCRLRWLNYL 70 (203)
Q Consensus 24 ~~WT~eED~~L~~~v~~~g~--~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l 70 (203)
-.||.|||..|+...++.|. ..|..||+.|+ +|++.|+.+||+..+
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~Lm 81 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRELM 81 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHHH
Confidence 47999999999999999986 36999999999 999999999998743
No 85
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.65 E-value=3.1e-05 Score=51.98 Aligned_cols=46 Identities=17% Similarity=0.195 Sum_probs=40.7
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCChhhhhh-hhccCcCCcccchhhhhc
Q 028843 22 NRGAWTAEEDRKLTEYIEIHGAKRWKNVAT-ESGLNRCGKSCRLRWLNY 69 (203)
Q Consensus 22 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~-~~~~~Rt~~qcr~Rw~~~ 69 (203)
....||++|-.+..+++..|| .+|..|++ .++ +|+..+|..-|...
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~-~Kt~~~~v~fYY~w 53 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYG-KDFNDIRQDFLP-WKSLTSIIEYYYMW 53 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCS-SSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcC-CCCHHHHHHHHHhh
Confidence 447899999999999999999 68999999 588 99999998887643
No 86
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.54 E-value=0.00024 Score=57.02 Aligned_cols=101 Identities=13% Similarity=0.124 Sum_probs=66.7
Q ss_pred CccCCCCHHHHHHHHHHHHHhC--CCChhhhhhh--hccCcCCcccchhhh-------h---------------------
Q 028843 21 VNRGAWTAEEDRKLTEYIEIHG--AKRWKNVATE--SGLNRCGKSCRLRWL-------N--------------------- 68 (203)
Q Consensus 21 ~~k~~WT~eED~~L~~~v~~~g--~~~W~~Ia~~--~~~~Rt~~qcr~Rw~-------~--------------------- 68 (203)
-....||..|-..|+.++.+|| ...|..|+.. +. +++...+..-+. .
T Consensus 5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~-~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~ 83 (211)
T 4b4c_A 5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELV-DKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKG 83 (211)
T ss_dssp ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCT-TSCHHHHHHHHHHHHHHHHHHHC-----------------C
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccc
Confidence 3457899999999999999999 4679999865 33 444433321000 0
Q ss_pred -----------------------cc---------------c-----CCCCCCCCChHHHHHHHHHHHHhC-Cchhhhhcc
Q 028843 69 -----------------------YL---------------R-----PNIKRGNISDDEEDLILRLHKLLG-SRWSLIAGR 104 (203)
Q Consensus 69 -----------------------~l---------------~-----~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~ 104 (203)
.| - +......||.+||..||..+.+|| ++|..|..-
T Consensus 84 ~~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D 163 (211)
T 4b4c_A 84 PTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMD 163 (211)
T ss_dssp CEEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred hhhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence 00 0 011123599999999999999999 999998531
Q ss_pred ---------C-----CCCCHHHHHHHHHHhhc
Q 028843 105 ---------L-----PGRTDNEIKNYWNSHLS 122 (203)
Q Consensus 105 ---------l-----~~Rt~~q~k~Rw~~~l~ 122 (203)
+ ..+++..+..|...+|+
T Consensus 164 ~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~ 195 (211)
T 4b4c_A 164 PDLSLTHKILPDDPDKKPQAKQLQTRADYLIK 195 (211)
T ss_dssp SSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred hhcCccccccccccccCCChHHHHHHHHHHHH
Confidence 1 12456678888776554
No 87
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.47 E-value=2.9e-05 Score=53.92 Aligned_cols=50 Identities=22% Similarity=0.597 Sum_probs=40.5
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC---------CChhhhhhhh---ccCcCCcccchhhhhccc
Q 028843 22 NRGAWTAEEDRKLTEYIEIHGA---------KRWKNVATES---GLNRCGKSCRLRWLNYLR 71 (203)
Q Consensus 22 ~k~~WT~eED~~L~~~v~~~g~---------~~W~~Ia~~~---~~~Rt~~qcr~Rw~~~l~ 71 (203)
+...||.+|-..|+++...... .-|..||..| |.+||+.||+.+|.++..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k 64 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLK 64 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 5689999999999999865321 1599999996 357999999999988643
No 88
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=97.47 E-value=0.00025 Score=61.79 Aligned_cols=100 Identities=20% Similarity=0.262 Sum_probs=76.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcc---------------------------------
Q 028843 24 GAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYL--------------------------------- 70 (203)
Q Consensus 24 ~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l--------------------------------- 70 (203)
+.||.-+=..++.++.+||..+-..||..|+.+++...++ +|.+.+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~ 202 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA 202 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999888999999996467766655 222110
Q ss_pred -------------------cCC-CCCCCCChHHHHHHHHHHHHhC----Cchhhhhcc------------CCCCCHHHHH
Q 028843 71 -------------------RPN-IKRGNISDDEEDLILRLHKLLG----SRWSLIAGR------------LPGRTDNEIK 114 (203)
Q Consensus 71 -------------------~~~-~~~~~WT~eEd~~Ll~~v~~~G----~~W~~Ia~~------------l~~Rt~~q~k 114 (203)
.++ .+...||++||..||-++.+|| +.|..|-.. +..||+..|.
T Consensus 203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~ 282 (374)
T 2y9y_A 203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA 282 (374)
T ss_dssp HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence 011 1345799999999999999999 469988322 4679999999
Q ss_pred HHHHHhhccc
Q 028843 115 NYWNSHLSKK 124 (203)
Q Consensus 115 ~Rw~~~l~~~ 124 (203)
.|...+++-.
T Consensus 283 rRc~tLi~~I 292 (374)
T 2y9y_A 283 RRGNTLLQCL 292 (374)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888643
No 89
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.40 E-value=0.00016 Score=50.15 Aligned_cols=54 Identities=17% Similarity=0.364 Sum_probs=43.6
Q ss_pred CCCCChHHHHHHHHHHHHhC----------CchhhhhccCC----CCCHHHHHHHHHHhhcccccCCC
Q 028843 76 RGNISDDEEDLILRLHKLLG----------SRWSLIAGRLP----GRTDNEIKNYWNSHLSKKINHKH 129 (203)
Q Consensus 76 ~~~WT~eEd~~Ll~~v~~~G----------~~W~~Ia~~l~----~Rt~~q~k~Rw~~~l~~~~~~~~ 129 (203)
...||.+|-..||+++..+. ..|..||..|. .||+.||+++|.++.+.......
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~ 71 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKH 71 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999997642 14999998862 69999999999998887654443
No 90
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.37 E-value=3.9e-05 Score=50.69 Aligned_cols=46 Identities=15% Similarity=0.304 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCC--ChhhhhhhhccCcCCcccchhhhhccc
Q 028843 24 GAWTAEEDRKLTEYIEIHGAK--RWKNVATESGLNRCGKSCRLRWLNYLR 71 (203)
Q Consensus 24 ~~WT~eED~~L~~~v~~~g~~--~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~ 71 (203)
-.||.|||..|+...++.|+. .|..||+.+ ||++.|+..||...++
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK 62 (70)
Confidence 479999999999999999963 699999988 6999999999987654
No 91
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=95.49 E-value=0.01 Score=41.62 Aligned_cols=49 Identities=16% Similarity=0.256 Sum_probs=41.5
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhc----cCcCCcccchhhhhcc
Q 028843 21 VNRGAWTAEEDRKLTEYIEIHGAKRWKNVATESG----LNRCGKSCRLRWLNYL 70 (203)
Q Consensus 21 ~~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~----~~Rt~~qcr~Rw~~~l 70 (203)
+....||.||-..|.+++++|+ -.|--|+.... .+|+..+..+||....
T Consensus 28 L~~~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 3447899999999999999999 66999999874 2689999999998754
No 92
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=95.45 E-value=0.034 Score=36.31 Aligned_cols=47 Identities=13% Similarity=0.030 Sum_probs=40.0
Q ss_pred CCCCCCChHHHHHHHHHHHHhCCc---hhhhhccC--CCCCHHHHHHHHHHh
Q 028843 74 IKRGNISDDEEDLILRLHKLLGSR---WSLIAGRL--PGRTDNEIKNYWNSH 120 (203)
Q Consensus 74 ~~~~~WT~eEd~~Ll~~v~~~G~~---W~~Ia~~l--~~Rt~~q~k~Rw~~~ 120 (203)
..+-.||+|..+..+++|.++|.. +..|.+.| +|.|..+|+.+.+.+
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 356689999999999999999954 78888776 789999999988765
No 93
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=94.39 E-value=0.047 Score=43.36 Aligned_cols=30 Identities=23% Similarity=0.365 Sum_probs=27.1
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCChhhhhhh
Q 028843 23 RGAWTAEEDRKLTEYIEIHGAKRWKNVATE 52 (203)
Q Consensus 23 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~ 52 (203)
...||++||..|+-.|.+||.++|..|-.-
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D 163 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMD 163 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence 456999999999999999999999999764
No 94
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=93.97 E-value=0.07 Score=34.82 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=39.4
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCC--Chhhhhhhhcc-CcCCcccchhhhhc
Q 028843 19 NVVNRGAWTAEEDRKLTEYIEIHGAK--RWKNVATESGL-NRCGKSCRLRWLNY 69 (203)
Q Consensus 19 ~~~~k~~WT~eED~~L~~~v~~~g~~--~W~~Ia~~~~~-~Rt~~qcr~Rw~~~ 69 (203)
+...+-.||+|..+..+.+|...|.. .++.|...|+. +.|..++.-|.+.|
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 34567899999999999999999943 27899988862 56777777666554
No 95
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=93.43 E-value=0.13 Score=43.65 Aligned_cols=46 Identities=15% Similarity=0.234 Sum_probs=40.4
Q ss_pred CCCChHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhc
Q 028843 77 GNISDDEEDLILRLHKLLG-SRWSLIAGRLPGRTDNEIKNYWNSHLS 122 (203)
Q Consensus 77 ~~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~ 122 (203)
+.||..+...++.++..|| .+|..||..|+|+|...|+..+.-...
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ 157 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWE 157 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 4799999999999999999 679999999999999999776654444
No 96
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=93.28 E-value=0.061 Score=44.87 Aligned_cols=29 Identities=31% Similarity=0.531 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhhh
Q 028843 24 GAWTAEEDRKLTEYIEIHGAKRWKNVATE 52 (203)
Q Consensus 24 ~~WT~eED~~L~~~v~~~g~~~W~~Ia~~ 52 (203)
..|+.+||..|+..|.+||.++|..|..-
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~D 197 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRDD 197 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhcC
Confidence 45999999999999999999999999754
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=91.45 E-value=0.14 Score=42.69 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=23.8
Q ss_pred CCChHHHHHHHHHHHHhC-Cchhhhh
Q 028843 78 NISDDEEDLILRLHKLLG-SRWSLIA 102 (203)
Q Consensus 78 ~WT~eEd~~Ll~~v~~~G-~~W~~Ia 102 (203)
.|+.+||..||..|.+|| +.|..|.
T Consensus 170 ~W~~~dD~~LLvGIykyGyG~We~Ir 195 (270)
T 2xb0_X 170 NWTKEEDEKLLIGVFKYGYGSWTQIR 195 (270)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcChHHHHHHHHHHHHHcCCcHHHHh
Confidence 599999999999999999 9999995
No 98
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=81.69 E-value=0.94 Score=33.06 Aligned_cols=57 Identities=16% Similarity=0.238 Sum_probs=39.8
Q ss_pred HHHHHHHHhCC-------CChhhhhhhhccCcCC----cccchhhhhcccCCCCCCCCChHHHHHHHHHHH
Q 028843 33 KLTEYIEIHGA-------KRWKNVATESGLNRCG----KSCRLRWLNYLRPNIKRGNISDDEEDLILRLHK 92 (203)
Q Consensus 33 ~L~~~v~~~g~-------~~W~~Ia~~~~~~Rt~----~qcr~Rw~~~l~~~~~~~~WT~eEd~~Ll~~v~ 92 (203)
+|-.+|.+.|. +.|..||..|+...+. ...+..|.++|.|-- ..+++|-..|.+-|.
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE---~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD---SLSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH---HCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH---CcCHHHHhhHHHHHH
Confidence 34455555552 3699999999855443 356888998888643 378899888887664
No 99
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=76.60 E-value=2.2 Score=37.01 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=28.9
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC---CChhhhhhhh
Q 028843 22 NRGAWTAEEDRKLTEYIEIHGA---KRWKNVATES 53 (203)
Q Consensus 22 ~k~~WT~eED~~L~~~v~~~g~---~~W~~Ia~~~ 53 (203)
++..||.+||..|+-++.+||. +.|..|-..+
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~I 261 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEI 261 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4668999999999999999999 8999997775
No 100
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=74.35 E-value=3.6 Score=31.52 Aligned_cols=32 Identities=22% Similarity=0.427 Sum_probs=23.6
Q ss_pred CCCCCccCCCCHHHHHHHH--------HHHHHhCCCChhhhhh
Q 028843 17 GKNVVNRGAWTAEEDRKLT--------EYIEIHGAKRWKNVAT 51 (203)
Q Consensus 17 ~~~~~~k~~WT~eED~~L~--------~~v~~~g~~~W~~Ia~ 51 (203)
.-|.-.+|.||+++|+.|. .++++|| |..|..
T Consensus 108 giP~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG---~erie~ 147 (168)
T 3cz6_A 108 NPPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG---TGRMEM 147 (168)
T ss_dssp SSCTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC---HHHHHH
T ss_pred CCCCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC---HHHHHH
Confidence 3455678999999999884 5788888 445543
No 101
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=74.21 E-value=1.7 Score=31.16 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=29.6
Q ss_pred HHHHHHHHhCC-------CChhhhhhhhccCcCCcccchhhhhcccC
Q 028843 33 KLTEYIEIHGA-------KRWKNVATESGLNRCGKSCRLRWLNYLRP 72 (203)
Q Consensus 33 ~L~~~v~~~g~-------~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~ 72 (203)
.|-.+|.+.|. +.|..||..|+... +..++..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 46677777773 36999999998433 77888888888765
No 102
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=69.25 E-value=3.2 Score=29.22 Aligned_cols=41 Identities=20% Similarity=0.359 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCC-------CChhhhhhhhccCcC----CcccchhhhhcccC
Q 028843 32 RKLTEYIEIHGA-------KRWKNVATESGLNRC----GKSCRLRWLNYLRP 72 (203)
Q Consensus 32 ~~L~~~v~~~g~-------~~W~~Ia~~~~~~Rt----~~qcr~Rw~~~l~~ 72 (203)
-.|-.+|.+.|. +.|..||..|+...+ +.+++..|.++|.|
T Consensus 36 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 36 WTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 346677777762 369999999984432 35678888888875
No 103
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=64.47 E-value=2.7 Score=30.17 Aligned_cols=40 Identities=23% Similarity=0.410 Sum_probs=27.5
Q ss_pred HHHHHHHHhCC-------CChhhhhhhhccCcC---CcccchhhhhcccC
Q 028843 33 KLTEYIEIHGA-------KRWKNVATESGLNRC---GKSCRLRWLNYLRP 72 (203)
Q Consensus 33 ~L~~~v~~~g~-------~~W~~Ia~~~~~~Rt---~~qcr~Rw~~~l~~ 72 (203)
+|-.+|.+.|. +.|..||..|+...+ +.+.+..|.++|.|
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 56677877773 369999999984432 34567777777654
No 104
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=62.76 E-value=3 Score=30.41 Aligned_cols=40 Identities=23% Similarity=0.481 Sum_probs=28.2
Q ss_pred HHHHHHHHhCC-------CChhhhhhhhccCcC----CcccchhhhhcccC
Q 028843 33 KLTEYIEIHGA-------KRWKNVATESGLNRC----GKSCRLRWLNYLRP 72 (203)
Q Consensus 33 ~L~~~v~~~g~-------~~W~~Ia~~~~~~Rt----~~qcr~Rw~~~l~~ 72 (203)
.|-.+|.+.|. +.|..||..|+...+ +.+++..|.++|.|
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 46677777773 369999999985443 24567778877765
No 105
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=61.87 E-value=5.1 Score=28.62 Aligned_cols=39 Identities=21% Similarity=0.361 Sum_probs=30.2
Q ss_pred HHHHHHHHhCC--------chhhhhccCCCCCHHHHHHHHHHhhccc
Q 028843 86 LILRLHKLLGS--------RWSLIAGRLPGRTDNEIKNYWNSHLSKK 124 (203)
Q Consensus 86 ~Ll~~v~~~G~--------~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~ 124 (203)
.|..+|...|+ .|..||..|.--.+..++..|..+|-+.
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 36777887774 5999999983334789999999988764
No 106
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=61.44 E-value=3.8 Score=28.16 Aligned_cols=40 Identities=23% Similarity=0.459 Sum_probs=26.0
Q ss_pred HHHHHHHHhCC-------CChhhhhhhhccCcC---CcccchhhhhcccC
Q 028843 33 KLTEYIEIHGA-------KRWKNVATESGLNRC---GKSCRLRWLNYLRP 72 (203)
Q Consensus 33 ~L~~~v~~~g~-------~~W~~Ia~~~~~~Rt---~~qcr~Rw~~~l~~ 72 (203)
.|-.+|.+.|. +.|.+||..|+...+ +.+++..|.++|.|
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 45566666652 369999999985432 23567777777653
No 107
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=58.40 E-value=3.9 Score=29.67 Aligned_cols=40 Identities=23% Similarity=0.505 Sum_probs=26.7
Q ss_pred HHHHHHHHhCC-------CChhhhhhhhccCcC---CcccchhhhhcccC
Q 028843 33 KLTEYIEIHGA-------KRWKNVATESGLNRC---GKSCRLRWLNYLRP 72 (203)
Q Consensus 33 ~L~~~v~~~g~-------~~W~~Ia~~~~~~Rt---~~qcr~Rw~~~l~~ 72 (203)
+|-.+|.+.|. +.|.+||..|+...+ +.+++..|.++|.|
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 46667777763 369999999985432 24567777776653
No 108
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=58.06 E-value=11 Score=26.84 Aligned_cols=39 Identities=15% Similarity=0.252 Sum_probs=28.8
Q ss_pred HHHHHHHHhCC--------chhhhhccCCCCC----HHHHHHHHHHhhccc
Q 028843 86 LILRLHKLLGS--------RWSLIAGRLPGRT----DNEIKNYWNSHLSKK 124 (203)
Q Consensus 86 ~Ll~~v~~~G~--------~W~~Ia~~l~~Rt----~~q~k~Rw~~~l~~~ 124 (203)
.|..+|...|+ .|..||..|.--. +.+++..|..+|.+.
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~y 94 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPY 94 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 46777888773 5999999982221 568899999888764
No 109
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=57.92 E-value=3.7 Score=28.79 Aligned_cols=41 Identities=20% Similarity=0.456 Sum_probs=27.1
Q ss_pred HHHHHHHHHhCC-------CChhhhhhhhccCcC---CcccchhhhhcccC
Q 028843 32 RKLTEYIEIHGA-------KRWKNVATESGLNRC---GKSCRLRWLNYLRP 72 (203)
Q Consensus 32 ~~L~~~v~~~g~-------~~W~~Ia~~~~~~Rt---~~qcr~Rw~~~l~~ 72 (203)
-.|-.+|.+.|. +.|..||..|+...+ +.+.+..|.++|.|
T Consensus 47 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 47 YTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 356677777773 369999999984332 34566777766543
No 110
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=56.90 E-value=5.1 Score=28.96 Aligned_cols=39 Identities=23% Similarity=0.516 Sum_probs=25.5
Q ss_pred HHHHHHHHhCC-------CChhhhhhhhccCcC---Ccccchhhhhccc
Q 028843 33 KLTEYIEIHGA-------KRWKNVATESGLNRC---GKSCRLRWLNYLR 71 (203)
Q Consensus 33 ~L~~~v~~~g~-------~~W~~Ia~~~~~~Rt---~~qcr~Rw~~~l~ 71 (203)
+|-.+|.+.|. +.|..||..|+...+ +.+.+..|.++|.
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~ 94 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILN 94 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhH
Confidence 46677777773 369999999984332 1345666666654
No 111
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=55.96 E-value=13 Score=25.81 Aligned_cols=39 Identities=18% Similarity=0.338 Sum_probs=28.1
Q ss_pred HHHHHHHHhCC--------chhhhhccCCCCC----HHHHHHHHHHhhccc
Q 028843 86 LILRLHKLLGS--------RWSLIAGRLPGRT----DNEIKNYWNSHLSKK 124 (203)
Q Consensus 86 ~Ll~~v~~~G~--------~W~~Ia~~l~~Rt----~~q~k~Rw~~~l~~~ 124 (203)
.|..+|...|+ .|..||..|.--. +.+++..|..+|.+.
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~y 98 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPF 98 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 46667777773 5999999983222 468899999887653
No 112
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=52.51 E-value=12 Score=22.96 Aligned_cols=41 Identities=20% Similarity=0.175 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhcc
Q 028843 82 DEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSK 123 (203)
Q Consensus 82 eEd~~Ll~~v~~~G~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~ 123 (203)
+.+..++.++-..|-.+..||..+ |-+...|+.+....+..
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 344455556556788999999999 88999998888765543
No 113
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=51.33 E-value=17 Score=26.21 Aligned_cols=39 Identities=21% Similarity=0.238 Sum_probs=28.9
Q ss_pred HHHHHHHHhCC--------chhhhhccCCCCC----HHHHHHHHHHhhccc
Q 028843 86 LILRLHKLLGS--------RWSLIAGRLPGRT----DNEIKNYWNSHLSKK 124 (203)
Q Consensus 86 ~Ll~~v~~~G~--------~W~~Ia~~l~~Rt----~~q~k~Rw~~~l~~~ 124 (203)
.|..+|...|+ .|..||..|.--+ +.+++..|..+|.+.
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~y 105 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAF 105 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 46677777773 5999999982222 468899999988865
No 114
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=50.95 E-value=16 Score=26.16 Aligned_cols=39 Identities=18% Similarity=0.299 Sum_probs=28.4
Q ss_pred HHHHHHHHhCC--------chhhhhccCCCC--C--HHHHHHHHHHhhccc
Q 028843 86 LILRLHKLLGS--------RWSLIAGRLPGR--T--DNEIKNYWNSHLSKK 124 (203)
Q Consensus 86 ~Ll~~v~~~G~--------~W~~Ia~~l~~R--t--~~q~k~Rw~~~l~~~ 124 (203)
+|..+|...|+ .|..|+..|.-- + +..+|..|..+|.+.
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~y 96 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPY 96 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 36677777773 599999998221 2 468899999888764
No 115
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=50.06 E-value=14 Score=23.28 Aligned_cols=41 Identities=22% Similarity=0.283 Sum_probs=29.8
Q ss_pred HHHHHHHHHHH----hCCchhhhhccCCCCCHHHHHHHHHHhhccc
Q 028843 83 EEDLILRLHKL----LGSRWSLIAGRLPGRTDNEIKNYWNSHLSKK 124 (203)
Q Consensus 83 Ed~~Ll~~v~~----~G~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~ 124 (203)
.+..++.+.-- .|-.+..||..+ |-|...|+.+....+...
T Consensus 14 ~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 14 REAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKL 58 (73)
T ss_dssp HHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 34444444443 578899999999 899999999887766544
No 116
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=48.77 E-value=7.4 Score=28.97 Aligned_cols=90 Identities=10% Similarity=0.076 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccCCCCCC-----------------------CCChHHHH
Q 028843 29 EEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNIKRG-----------------------NISDDEED 85 (203)
Q Consensus 29 eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~-----------------------~WT~eEd~ 85 (203)
+-|.+|+.++.+.|.-.+.+||+.+| -+...|+.|..+....++.++ +=..+.-.
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg--~s~~tv~~rl~~L~~~g~i~~~~a~~~~~~lG~~~~a~v~v~v~~~~~~~~~ 80 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVG--LSTTPCWRRIQKMEEDGVIRRRVALLDPVKVNTKVTVFVSIRTASHSIEWLK 80 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHT--CCHHHHHHHHHHHHHTTSSCCCCCCCCTTTTTCCEEEEEEEECCSCCHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCeeeceeeeCHHHhcCcEEEEEEEEEcCCChHHHH
Confidence 45788999999988889999999996 788889988887755444332 11122334
Q ss_pred HHHHHHHHhC---------CchhhhhccCCCCCHHHHHHHHHHhh
Q 028843 86 LILRLHKLLG---------SRWSLIAGRLPGRTDNEIKNYWNSHL 121 (203)
Q Consensus 86 ~Ll~~v~~~G---------~~W~~Ia~~l~~Rt~~q~k~Rw~~~l 121 (203)
.+.+.+..+. +.|.-+.... .++...+..-....+
T Consensus 81 ~~~~~l~~~peV~~~~~vtG~~D~~l~v~-~~d~~~l~~~l~~~l 124 (162)
T 3i4p_A 81 RFSEVVSEFPEVVEFYRMSGDVDYLLRVV-VPDIAAYDAFYKRMI 124 (162)
T ss_dssp HHHHHHHHCTTEEEEEECCSSCSEEEEEE-ESSHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEeeecCCCCCEEEEEE-ECCHHHHHHHHHHHh
Confidence 5555555543 3466555544 477777666554443
No 117
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=48.04 E-value=17 Score=26.17 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=29.2
Q ss_pred HHHHHHHHhCC--------chhhhhccC--CCC---CHHHHHHHHHHhhccc
Q 028843 86 LILRLHKLLGS--------RWSLIAGRL--PGR---TDNEIKNYWNSHLSKK 124 (203)
Q Consensus 86 ~Ll~~v~~~G~--------~W~~Ia~~l--~~R---t~~q~k~Rw~~~l~~~ 124 (203)
.|..+|...|+ .|..||..| |.- .+..++..|..+|-+.
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y 97 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY 97 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH
Confidence 46678888874 599999998 322 2468899999888764
No 118
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=47.85 E-value=16 Score=27.13 Aligned_cols=54 Identities=24% Similarity=0.405 Sum_probs=34.5
Q ss_pred HHHHHHHHhCC-------CChhhhhhhhccCcC----CcccchhhhhcccC--CCCCCCCChHHHHH
Q 028843 33 KLTEYIEIHGA-------KRWKNVATESGLNRC----GKSCRLRWLNYLRP--NIKRGNISDDEEDL 86 (203)
Q Consensus 33 ~L~~~v~~~g~-------~~W~~Ia~~~~~~Rt----~~qcr~Rw~~~l~~--~~~~~~WT~eEd~~ 86 (203)
+|-.+|.+.|. +.|..||..|+...+ +.+++..|.++|-| ...+|.=+++|-+.
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~p~~~~~ 134 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQA 134 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCCHHHHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 45667777763 369999999985432 34678888888876 23445544444333
No 119
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=47.62 E-value=21 Score=26.40 Aligned_cols=39 Identities=18% Similarity=0.260 Sum_probs=29.5
Q ss_pred HHHHHHHHhCC--------chhhhhccC--CCC---CHHHHHHHHHHhhccc
Q 028843 86 LILRLHKLLGS--------RWSLIAGRL--PGR---TDNEIKNYWNSHLSKK 124 (203)
Q Consensus 86 ~Ll~~v~~~G~--------~W~~Ia~~l--~~R---t~~q~k~Rw~~~l~~~ 124 (203)
.|..+|...|+ .|..||..| |.. .+..++..|..+|.+.
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~y 119 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPY 119 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 46677777773 599999998 222 2568999999998875
No 120
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=47.57 E-value=17 Score=27.83 Aligned_cols=17 Identities=18% Similarity=0.327 Sum_probs=14.7
Q ss_pred CCCCCCCCChHHHHHHH
Q 028843 72 PNIKRGNISDDEEDLIL 88 (203)
Q Consensus 72 ~~~~~~~WT~eEd~~Ll 88 (203)
|.-..|-||.++|+.|.
T Consensus 110 P~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLK 126 (168)
T ss_dssp CTTCTTCCCHHHHHHHH
T ss_pred CCCCCCCCChhhHHHHH
Confidence 45678999999999986
No 121
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=46.44 E-value=22 Score=25.64 Aligned_cols=39 Identities=18% Similarity=0.230 Sum_probs=29.4
Q ss_pred HHHHHHHHhCC--------chhhhhccC--CCC---CHHHHHHHHHHhhccc
Q 028843 86 LILRLHKLLGS--------RWSLIAGRL--PGR---TDNEIKNYWNSHLSKK 124 (203)
Q Consensus 86 ~Ll~~v~~~G~--------~W~~Ia~~l--~~R---t~~q~k~Rw~~~l~~~ 124 (203)
.|..+|...|+ .|..||..| |.. .+..++..|..+|.+.
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~y 107 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPY 107 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 46677788773 599999998 222 2578999999988764
No 122
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=45.98 E-value=15 Score=22.86 Aligned_cols=29 Identities=21% Similarity=0.129 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhCCCChhhhhhhhccCc
Q 028843 28 AEEDRKLTEYIEIHGAKRWKNVATESGLNR 57 (203)
Q Consensus 28 ~eED~~L~~~v~~~g~~~W~~Ia~~~~~~R 57 (203)
.-|.+.|..++..++ ++..+.|..+|..|
T Consensus 18 ~~E~~~i~~aL~~~~-gn~~~aA~~LGisr 46 (63)
T 3e7l_A 18 EFEKIFIEEKLREYD-YDLKRTAEEIGIDL 46 (63)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHHhC-CCHHHHHHHHCcCH
Confidence 347778888999998 78999999998544
No 123
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=45.83 E-value=11 Score=27.25 Aligned_cols=38 Identities=21% Similarity=0.371 Sum_probs=29.3
Q ss_pred HHHHHHHhCC--------chhhhhccCCCCCHHHHHHHHHHhhccc
Q 028843 87 ILRLHKLLGS--------RWSLIAGRLPGRTDNEIKNYWNSHLSKK 124 (203)
Q Consensus 87 Ll~~v~~~G~--------~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~ 124 (203)
|..+|...|+ .|..||..|.--.+..++..|..+|-+.
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 98 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 98 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHH
Confidence 6666766663 5999999983333899999999998875
No 124
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=43.95 E-value=17 Score=22.59 Aligned_cols=30 Identities=13% Similarity=0.084 Sum_probs=25.5
Q ss_pred hCCchhhhhccCCCCCHHHHHHHHHHhhccc
Q 028843 94 LGSRWSLIAGRLPGRTDNEIKNYWNSHLSKK 124 (203)
Q Consensus 94 ~G~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~ 124 (203)
.|-.+..||..+ |-|...|+.+....+++.
T Consensus 24 ~g~s~~eIA~~l-gis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 24 TDYTLEEVGKQF-DVTRERIRQIEAKALRKL 53 (68)
T ss_dssp SCCCHHHHHHHH-TCCHHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 478899999999 999999999988776654
No 125
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=34.96 E-value=48 Score=21.98 Aligned_cols=33 Identities=9% Similarity=0.070 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcC
Q 028843 25 AWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRC 58 (203)
Q Consensus 25 ~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt 58 (203)
....-|.+.|.+++..++ ++..+.|+.+|..|+
T Consensus 37 ~l~~~Er~~I~~aL~~~~-GN~s~AA~~LGISR~ 69 (81)
T 1umq_A 37 SADRVRWEHIQRIYEMCD-RNVSETARRLNMHRR 69 (81)
T ss_dssp CHHHHHHHHHHHHHHHTT-SCHHHHHHHHTSCHH
T ss_pred hHHHHHHHHHHHHHHHhC-CCHHHHHHHhCCCHH
Confidence 344557778888999988 678999999985443
No 126
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=34.94 E-value=50 Score=24.26 Aligned_cols=45 Identities=11% Similarity=0.014 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhcccccC
Q 028843 82 DEEDLILRLHKLLG-SRWSLIAGRLPGRTDNEIKNYWNSHLSKKINH 127 (203)
Q Consensus 82 eEd~~Ll~~v~~~G-~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~~~~ 127 (203)
+-|..|+.+.++.| -.+..||+.+ |=|...|+.|...+....+-.
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 45778888887776 6799999999 999999999999887776544
No 127
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=34.58 E-value=34 Score=23.22 Aligned_cols=45 Identities=22% Similarity=0.451 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccCCC-------CCCCCChHHHHHHH
Q 028843 31 DRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNI-------KRGNISDDEEDLIL 88 (203)
Q Consensus 31 D~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~-------~~~~WT~eEd~~Ll 88 (203)
+.+|.++|..|| |..++..+. ..|.. .+|.+ ++.||..+.-+.|.
T Consensus 18 E~ilt~Lv~~YG---W~~L~~~i~-----I~CF~-----~~PSikSSLKFLRKTpWAR~KVE~lY 69 (88)
T 2jvw_A 18 QKLLTELVEHYG---WEELSYMVN-----INCFK-----KDPSIKSSLKFLRKTDWARERVENIY 69 (88)
T ss_dssp HHHHHHHHHHTC---HHHHHHHTT-----SSSTT-----SSCCHHHHHHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---HHHHHhhcc-----cccCC-----CCCchHHHHHHHhcCHhHHHHHHHHH
Confidence 578899999999 999998775 23322 23433 45688887766654
No 128
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=34.25 E-value=33 Score=22.57 Aligned_cols=40 Identities=18% Similarity=0.198 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhcc
Q 028843 83 EEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSK 123 (203)
Q Consensus 83 Ed~~Ll~~v~~~G~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~ 123 (203)
.+..++.++-..|-.-..||..| |-+...|+.+....+.+
T Consensus 41 ~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 41 EHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34445555556678899999999 89999999888765543
No 129
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=34.09 E-value=42 Score=21.89 Aligned_cols=39 Identities=15% Similarity=0.324 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccch
Q 028843 25 AWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRL 64 (203)
Q Consensus 25 ~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~ 64 (203)
..|..-++++..+....|+..=-.||+.+| -|+++++--
T Consensus 6 qls~~~ee~I~~fL~~~Gp~~AL~IAK~LG-lktAK~VNp 44 (72)
T 3eyi_A 6 QFSQQREEDIYRFLKDNGPQRALVIAQALG-MRTAKDVNR 44 (72)
T ss_dssp CCSSHHHHHHHHHHHHHCSEEHHHHHHHTT-CCSGGGTHH
T ss_pred hhhhhhHHHHHHHHHHcCCchHHHHHHHhC-cchhhhcCH
Confidence 445555778888999999888889999999 799998743
No 130
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=33.19 E-value=24 Score=26.32 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=26.8
Q ss_pred hhhhhhhccCcCCcccchhhhhcccCCCCCCCCChHHHHHHHH
Q 028843 47 KNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDDEEDLILR 89 (203)
Q Consensus 47 ~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~WT~eEd~~Ll~ 89 (203)
..||..+. |+|+.+||.-+. + ...+|+||++.+.+
T Consensus 119 ~~vA~~ik-gkt~eeir~~f~------I-~nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 119 QTVADMIK-GKTPEEIRTTFN------I-KNDFTPEEEEEVRR 153 (160)
T ss_dssp HHHHHTTT-TCCHHHHHHHTT------C-CCCCCHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHcC------C-CCCCCHHHHHHHHH
Confidence 57888887 999999988662 2 33599999987753
No 131
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=33.18 E-value=54 Score=22.76 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=27.6
Q ss_pred ChHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHH
Q 028843 80 SDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKN 115 (203)
Q Consensus 80 T~eEd~~Ll~~v~~~G~~W~~Ia~~l~~Rt~~q~k~ 115 (203)
+..-+..|..+....|..|..+|..| |=+..+|..
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 55667778888889999999999998 766665544
No 132
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=33.08 E-value=28 Score=26.15 Aligned_cols=44 Identities=14% Similarity=0.253 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccCCC
Q 028843 29 EEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNI 74 (203)
Q Consensus 29 eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~ 74 (203)
+-|..|+.++...|...+.+||+.++ -+...|+.|.......++
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~lg--lS~~tv~~rl~~L~~~G~ 70 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKITG--LAESTIHERIRKLRESGV 70 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHT--SCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCC
Confidence 45677888888888788999999996 788888888777655443
No 133
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=29.02 E-value=45 Score=24.33 Aligned_cols=28 Identities=18% Similarity=0.106 Sum_probs=22.9
Q ss_pred CCchhhhhccCCCCCHHHHHHHHHHhhcc
Q 028843 95 GSRWSLIAGRLPGRTDNEIKNYWNSHLSK 123 (203)
Q Consensus 95 G~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~ 123 (203)
|-....||..+ |-|...|+.+....++.
T Consensus 151 g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 178 (184)
T 2q1z_A 151 DLTHRELAAET-GLPLGTIKSRIRLALDR 178 (184)
T ss_dssp CCSSCCSTTTC-CCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 66789999999 88999999988866543
No 134
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=28.72 E-value=1.5e+02 Score=20.78 Aligned_cols=68 Identities=10% Similarity=0.118 Sum_probs=43.3
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhc------ccCCCC----CCCCChHHHHHHHHHH
Q 028843 22 NRGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNY------LRPNIK----RGNISDDEEDLILRLH 91 (203)
Q Consensus 22 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~------l~~~~~----~~~WT~eEd~~Ll~~v 91 (203)
.....|.++-..++.++. .| ..-..||..++ .+...++ +|.+. +.+... ....+++....|++++
T Consensus 29 ~~~~~s~e~r~~iv~~~~-~G-~s~~~iA~~lg--is~~TV~-rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~ 103 (149)
T 1k78_A 29 NGRPLPDVVRQRIVELAH-QG-VRPCDISRQLR--VSHGCVS-KILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYK 103 (149)
T ss_dssp TTSCCCHHHHHHHHHHHH-TT-CCHHHHHHHHT--CCHHHHH-HHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH-cC-CCHHHHHHHHC--cCHHHHH-HHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHH
Confidence 345789999888888884 56 45789999996 4444433 33321 222221 2347888888888887
Q ss_pred HHh
Q 028843 92 KLL 94 (203)
Q Consensus 92 ~~~ 94 (203)
.+.
T Consensus 104 ~~~ 106 (149)
T 1k78_A 104 RQN 106 (149)
T ss_dssp HHC
T ss_pred HhC
Confidence 664
No 135
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=28.64 E-value=46 Score=23.51 Aligned_cols=31 Identities=26% Similarity=0.462 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhCCchhhhhccCCCCCHHHHHH
Q 028843 84 EDLILRLHKLLGSRWSLIAGRLPGRTDNEIKN 115 (203)
Q Consensus 84 d~~Ll~~v~~~G~~W~~Ia~~l~~Rt~~q~k~ 115 (203)
+..|..+....|..|..+|..| |=+..+|..
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 4567777888999999999998 666655543
No 136
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=28.60 E-value=53 Score=23.16 Aligned_cols=29 Identities=28% Similarity=0.473 Sum_probs=22.2
Q ss_pred HHHHHHHHhCCchhhhhccCCCCCHHHHHH
Q 028843 86 LILRLHKLLGSRWSLIAGRLPGRTDNEIKN 115 (203)
Q Consensus 86 ~Ll~~v~~~G~~W~~Ia~~l~~Rt~~q~k~ 115 (203)
.|..++...|..|..+|..| |=+..+|..
T Consensus 26 ~l~~Ia~~lG~~Wk~LAR~L-Glse~dId~ 54 (114)
T 2of5_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (114)
T ss_dssp HHHHHHHTCCSTHHHHHHTT-TCCHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 46666788999999999998 666665543
No 137
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=28.10 E-value=50 Score=21.49 Aligned_cols=40 Identities=18% Similarity=0.142 Sum_probs=28.9
Q ss_pred HHHHHHHHHH----hCCchhhhhccCCCCCHHHHHHHHHHhhccc
Q 028843 84 EDLILRLHKL----LGSRWSLIAGRLPGRTDNEIKNYWNSHLSKK 124 (203)
Q Consensus 84 d~~Ll~~v~~----~G~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~ 124 (203)
+..++.+.-- .|-.+..||..+ |-|...|+.+-...+++.
T Consensus 23 er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~kL 66 (87)
T 1tty_A 23 EAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRKL 66 (87)
T ss_dssp HHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 3444444443 467899999999 899999999887666544
No 138
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=28.07 E-value=67 Score=19.95 Aligned_cols=43 Identities=16% Similarity=0.153 Sum_probs=30.9
Q ss_pred CChHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhccc
Q 028843 79 ISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKK 124 (203)
Q Consensus 79 WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~ 124 (203)
.|+.|-+.| .++ ..|-.-..||..+ |-+...|+.+....+.+.
T Consensus 17 L~~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~kl 59 (79)
T 1x3u_A 17 LSERERQVL-SAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAKM 59 (79)
T ss_dssp HCHHHHHHH-HHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 344444444 444 5678899999999 889999998887766543
No 139
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=27.73 E-value=56 Score=23.09 Aligned_cols=29 Identities=28% Similarity=0.473 Sum_probs=22.0
Q ss_pred HHHHHHHHhCCchhhhhccCCCCCHHHHHH
Q 028843 86 LILRLHKLLGSRWSLIAGRLPGRTDNEIKN 115 (203)
Q Consensus 86 ~Ll~~v~~~G~~W~~Ia~~l~~Rt~~q~k~ 115 (203)
.|..++...|..|..+|..| |=+..+|..
T Consensus 26 ~l~~Ia~~LG~~Wk~LAR~L-Glse~dId~ 54 (115)
T 2o71_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (115)
T ss_dssp HHHHHHHHCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 46666788999999999998 666655543
No 140
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=25.77 E-value=68 Score=23.45 Aligned_cols=28 Identities=11% Similarity=0.063 Sum_probs=22.8
Q ss_pred CCchhhhhccCCCCCHHHHHHHHHHhhcc
Q 028843 95 GSRWSLIAGRLPGRTDNEIKNYWNSHLSK 123 (203)
Q Consensus 95 G~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~ 123 (203)
|-....||..+ |-+...|+.+....++.
T Consensus 156 g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 156 GLSYEEIAAIM-DCPVGTVRSRIFRAREA 183 (194)
T ss_dssp CCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 66789999999 89999999888765543
No 141
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=24.92 E-value=1e+02 Score=20.28 Aligned_cols=35 Identities=14% Similarity=0.012 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHH
Q 028843 82 DEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYW 117 (203)
Q Consensus 82 eEd~~Ll~~v~~~G~~W~~Ia~~l~~Rt~~q~k~Rw 117 (203)
-|...|.+++..+|++-+..|+.| |=+...+..+-
T Consensus 51 ~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rkl 85 (91)
T 1ntc_A 51 LERTLLTTALRHTQGHKQEAARLL-GWGAATLTAKL 85 (91)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHHH
Confidence 477888899999999999999998 66666665543
No 142
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=24.64 E-value=96 Score=21.38 Aligned_cols=31 Identities=29% Similarity=0.526 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhCCchhhhhccCCCCCHHHHHH
Q 028843 84 EDLILRLHKLLGSRWSLIAGRLPGRTDNEIKN 115 (203)
Q Consensus 84 d~~Ll~~v~~~G~~W~~Ia~~l~~Rt~~q~k~ 115 (203)
+..|-.++...|..|..+|..| |=+..+|..
T Consensus 18 ~~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ 48 (110)
T 1wxp_A 18 GEQIEVFANKLGEQWKILAPYL-EMKDSEIRQ 48 (110)
T ss_dssp HHHHHHHHHHHTTTHHHHTTTT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHh-CCCHHHHHH
Confidence 4455566777899999999999 666655543
No 143
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=24.21 E-value=71 Score=21.17 Aligned_cols=44 Identities=27% Similarity=0.288 Sum_probs=33.7
Q ss_pred CCChHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhccc
Q 028843 78 NISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKK 124 (203)
Q Consensus 78 ~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~ 124 (203)
..|+.|-+.|.- + ..|-.-..||..+ |-+...|+.+....+++.
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 456666555544 4 6788899999999 889999999888776654
No 144
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=23.47 E-value=42 Score=24.19 Aligned_cols=41 Identities=12% Similarity=0.214 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccC
Q 028843 30 EDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRP 72 (203)
Q Consensus 30 ED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~ 72 (203)
-|..|+.++...|.-.+.+||..++ -+...|+.|.......
T Consensus 8 ~~~~il~~L~~~~~~s~~ela~~lg--~s~~tv~~~l~~L~~~ 48 (151)
T 2cyy_A 8 IDKKIIKILQNDGKAPLREISKITG--LAESTIHERIRKLRES 48 (151)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHC--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHHHC
Confidence 4667778888888778999999996 6777788777665443
No 145
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=23.22 E-value=89 Score=21.59 Aligned_cols=39 Identities=15% Similarity=0.066 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhc
Q 028843 83 EEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLS 122 (203)
Q Consensus 83 Ed~~Ll~~v~~~G~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~ 122 (203)
.+..++.++-..|-....||..+ |-+...|+.+....+.
T Consensus 29 ~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~ 67 (113)
T 1xsv_A 29 KQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGD 67 (113)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 34445555556688899999999 8899999888776544
No 146
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=23.06 E-value=38 Score=25.05 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=26.0
Q ss_pred hhhhhhhccCcCCcccchhhhhcccCCCCCCCCChHHHHHHH
Q 028843 47 KNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDDEEDLIL 88 (203)
Q Consensus 47 ~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~WT~eEd~~Ll 88 (203)
..||..+. |+|+.++|..|. + ...+|+||++.+.
T Consensus 120 ~~va~~i~-gkt~eeir~~f~------I-~~d~t~eEe~~ir 153 (159)
T 2ast_A 120 KTVANMIK-GKTPEEIRKTFN------I-KNDFTEEEEAQVR 153 (159)
T ss_dssp HHHHHHHS-SCCHHHHHHHTT------C-CCCSCTTHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHcC------C-CCCCCHHHHHHHH
Confidence 46888887 999999998763 2 3458999988765
No 147
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=22.22 E-value=90 Score=23.17 Aligned_cols=46 Identities=13% Similarity=0.154 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhcccccC
Q 028843 81 DDEEDLILRLHKLLG-SRWSLIAGRLPGRTDNEIKNYWNSHLSKKINH 127 (203)
Q Consensus 81 ~eEd~~Ll~~v~~~G-~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~~~~ 127 (203)
.+-|..|+.+....| ..+..||+.+ |-+...|+.|...+....+-.
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~I~ 72 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVIK 72 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 345677788877766 6799999999 889999999999887766544
No 148
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=21.93 E-value=1e+02 Score=21.85 Aligned_cols=43 Identities=12% Similarity=0.061 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhcccc
Q 028843 82 DEEDLILRLHKLLG-SRWSLIAGRLPGRTDNEIKNYWNSHLSKKI 125 (203)
Q Consensus 82 eEd~~Ll~~v~~~G-~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~~ 125 (203)
+-|..|+.+....| -.+..||+.+ |=+...|..|...+....+
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~ 52 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGI 52 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 44667777777766 6799999999 8899999999998766544
No 149
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=21.51 E-value=79 Score=19.22 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=33.4
Q ss_pred CCCChHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhccc
Q 028843 77 GNISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKK 124 (203)
Q Consensus 77 ~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~ 124 (203)
...|+.|-+.|.- + ..|..-..||..+ |-+...|+.+......+.
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl 54 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQKL 54 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 3467766666544 4 5678899999999 889999998887765543
No 150
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=21.12 E-value=1.9e+02 Score=20.23 Aligned_cols=63 Identities=10% Similarity=-0.050 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhCCCChhhhhhhhccCcCCcccchhhhhcccCCC--CCCCCChHHHHHHH--------HHHHHhCC
Q 028843 31 DRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYLRPNI--KRGNISDDEEDLIL--------RLHKLLGS 96 (203)
Q Consensus 31 D~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~--~~~~WT~eEd~~Ll--------~~v~~~G~ 96 (203)
-+.|+.++.++. .+-..|.+.+- ++......--.-.+++.- ..-.|+..+|..|. +++.+||.
T Consensus 14 ~~~i~~lMeef~-~DL~sVTqAlL--K~SGel~at~~fL~~~~r~dg~PiWsr~DD~~Lqk~D~~~R~qL~~KfG~ 86 (111)
T 3k6g_A 14 IKIIRQLMEKFN-LDLSTVTQAFL--KNSGELEATSAFLASGQRADGYPIWSRQDDIDLQKDDEDTREALVKKFGA 86 (111)
T ss_dssp HHHHHHHHHHTT-CCHHHHHHHHH--HTTTCHHHHHHHHHHSSCTTSCCCCCHHHHHHHTCCCHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHh-hhHHHHHHHHH--HccccHHHHHHHHhCCCcCCCCcceeeccHHHHhcCCHHHHHHHHHHHhh
Confidence 466778888888 67888888875 555444331112334432 22369999998876 57778884
No 151
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=21.09 E-value=79 Score=20.29 Aligned_cols=44 Identities=27% Similarity=0.308 Sum_probs=32.9
Q ss_pred CCChHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhccc
Q 028843 78 NISDDEEDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWNSHLSKK 124 (203)
Q Consensus 78 ~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~~Rt~~q~k~Rw~~~l~~~ 124 (203)
..|+.|-+.|. ++ ..|-.-..||..+ |-+...|+.+....+++.
T Consensus 21 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 64 (82)
T 1je8_A 21 QLTPRERDILK-LI-AQGLPNKMIARRL-DITESTVKVHVKHMLKKM 64 (82)
T ss_dssp GSCHHHHHHHH-HH-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 35666655554 44 5688899999999 889999999888766543
No 152
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=20.89 E-value=44 Score=25.17 Aligned_cols=35 Identities=26% Similarity=0.233 Sum_probs=26.9
Q ss_pred hhhhhhhhccCcCCcccchhhhhcccCCCCCCCCChHHHHHHH
Q 028843 46 WKNVATESGLNRCGKSCRLRWLNYLRPNIKRGNISDDEEDLIL 88 (203)
Q Consensus 46 W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~WT~eEd~~Ll 88 (203)
=..||..+. |+|+.++|.-|. + ..-+|+||++.+.
T Consensus 126 c~~vA~~ik-gktpeeiR~~f~------I-~nd~t~eEe~~ir 160 (169)
T 3v7d_A 126 CKVVAEMIR-GRSPEEIRRTFN------I-VNDFTPEEEAAIR 160 (169)
T ss_dssp HHHHHHHHT-TCCHHHHHHHHT------C-CCCCCHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHcC------C-CCCCCHHHHHHHH
Confidence 467888887 999999988663 2 3359999998774
No 153
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=20.84 E-value=64 Score=22.02 Aligned_cols=30 Identities=20% Similarity=0.112 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhCCCChhhhhhhhccCcC
Q 028843 28 AEEDRKLTEYIEIHGAKRWKNVATESGLNRC 58 (203)
Q Consensus 28 ~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt 58 (203)
.-|...|..++..++ ++-...|+.+|.+|+
T Consensus 57 ~~Er~~I~~aL~~~~-gn~~~AA~~LGIsR~ 86 (98)
T 1eto_A 57 EVEQPLLDMVMQYTL-GNQTRAALMMGINRG 86 (98)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHhC-CCHHHHHHHhCCCHH
Confidence 346777778888888 678999999985543
No 154
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=20.29 E-value=94 Score=23.36 Aligned_cols=34 Identities=18% Similarity=0.077 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHH
Q 028843 84 EDLILRLHKLLGSRWSLIAGRLPGRTDNEIKNYWN 118 (203)
Q Consensus 84 d~~Ll~~v~~~G~~W~~Ia~~l~~Rt~~q~k~Rw~ 118 (203)
-++|+.+-..-|-.|..||+.+ |+|..-+-.-..
T Consensus 15 ~~~I~~AK~~KGLTwe~IAe~i-G~S~v~vtaa~l 48 (156)
T 1dw9_A 15 ADAILLSKAKKDLSFAEIADGT-GLAEAFVTAALL 48 (156)
T ss_dssp HHHHHHHHHHTTCCHHHHHTTS-SSCHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHh-CcCHHHHHHHHc
Confidence 3567777777899999999999 899886655443
Done!