Query 028844
Match_columns 203
No_of_seqs 201 out of 1542
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 03:25:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028844.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028844hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 99.9 5.1E-25 1.1E-29 191.1 21.0 189 1-193 18-213 (358)
2 PRK11272 putative DMT superfam 99.9 1.1E-20 2.4E-25 159.8 19.3 158 2-192 14-173 (292)
3 TIGR00688 rarD rarD protein. T 99.9 2.4E-20 5.2E-25 154.7 17.3 156 2-193 8-170 (256)
4 PRK11453 O-acetylserine/cystei 99.9 3.6E-20 7.8E-25 157.1 18.4 157 2-193 10-167 (299)
5 PRK11689 aromatic amino acid e 99.9 2.1E-20 4.5E-25 158.4 16.4 166 2-192 10-179 (295)
6 TIGR00950 2A78 Carboxylate/Ami 99.9 5.2E-20 1.1E-24 152.2 17.2 152 8-193 1-152 (260)
7 PRK15430 putative chlorampheni 99.8 2.5E-19 5.4E-24 151.9 15.7 155 2-192 14-172 (296)
8 TIGR00817 tpt Tpt phosphate/ph 99.8 9.2E-18 2E-22 142.4 18.6 151 13-193 19-169 (302)
9 PRK10532 threonine and homoser 99.7 1.9E-16 4.1E-21 134.0 16.6 156 1-193 17-172 (293)
10 TIGR03340 phn_DUF6 phosphonate 99.7 3.6E-16 7.7E-21 131.5 16.3 159 2-191 7-166 (281)
11 PTZ00343 triose or hexose phos 99.7 9.2E-16 2E-20 133.1 18.5 152 11-193 64-218 (350)
12 PF00892 EamA: EamA-like trans 99.7 1.1E-16 2.4E-21 117.3 10.6 124 6-139 1-125 (126)
13 COG0697 RhaT Permeases of the 99.6 3.2E-14 7E-19 118.2 17.3 163 2-192 13-177 (292)
14 COG2510 Predicted membrane pro 99.6 1.4E-14 3.1E-19 106.5 9.0 128 2-139 9-138 (140)
15 PF06027 DUF914: Eukaryotic pr 99.6 2.4E-13 5.1E-18 116.8 17.6 164 9-193 26-192 (334)
16 TIGR00950 2A78 Carboxylate/Ami 99.5 2.3E-12 5E-17 106.5 14.3 123 2-135 134-259 (260)
17 PF13536 EmrE: Multidrug resis 99.4 1.4E-12 3.1E-17 95.5 8.8 103 30-141 2-107 (113)
18 TIGR00776 RhaT RhaT L-rhamnose 99.4 1.1E-11 2.5E-16 104.9 15.4 162 2-191 7-174 (290)
19 PRK10532 threonine and homoser 99.3 7.6E-11 1.6E-15 99.8 16.2 128 2-141 154-282 (293)
20 PRK11272 putative DMT superfam 99.3 6.8E-11 1.5E-15 100.0 15.1 129 2-140 156-285 (292)
21 COG2962 RarD Predicted permeas 99.3 4.9E-10 1.1E-14 93.3 16.6 154 2-191 13-170 (293)
22 PRK11689 aromatic amino acid e 99.2 3.4E-10 7.5E-15 95.9 13.8 125 2-140 162-287 (295)
23 PLN00411 nodulin MtN21 family 99.2 6.6E-10 1.4E-14 96.8 15.4 130 2-142 195-330 (358)
24 KOG2765 Predicted membrane pro 99.1 1.7E-10 3.7E-15 98.8 8.2 102 73-193 170-271 (416)
25 PRK11453 O-acetylserine/cystei 99.1 2.8E-09 6.2E-14 90.4 15.4 130 2-139 149-286 (299)
26 COG5006 rhtA Threonine/homoser 99.1 5.2E-09 1.1E-13 85.6 14.2 143 13-192 29-171 (292)
27 TIGR03340 phn_DUF6 phosphonate 99.1 8.8E-10 1.9E-14 92.7 9.7 126 2-137 150-280 (281)
28 KOG4510 Permease of the drug/m 99.1 5.9E-11 1.3E-15 97.7 2.3 166 5-191 46-213 (346)
29 TIGR00817 tpt Tpt phosphate/ph 99.0 1.3E-09 2.8E-14 92.4 10.2 132 2-141 151-294 (302)
30 PRK15430 putative chlorampheni 98.9 6.2E-08 1.3E-12 82.1 14.3 129 2-139 155-284 (296)
31 PF08449 UAA: UAA transporter 98.9 1.4E-07 3.1E-12 80.2 16.0 152 24-198 31-183 (303)
32 PF03151 TPT: Triose-phosphate 98.8 2.3E-07 5.1E-12 70.5 14.1 127 2-137 6-150 (153)
33 PTZ00343 triose or hexose phos 98.8 2.3E-07 5.1E-12 80.6 15.5 130 2-139 200-347 (350)
34 COG0697 RhaT Permeases of the 98.8 3.3E-07 7.2E-12 75.9 15.5 126 2-139 160-286 (292)
35 PRK15051 4-amino-4-deoxy-L-ara 98.8 1.5E-07 3.3E-12 68.7 11.8 68 66-139 41-108 (111)
36 TIGR00776 RhaT RhaT L-rhamnose 98.7 1.8E-07 3.9E-12 79.2 11.7 122 2-139 158-287 (290)
37 PF04142 Nuc_sug_transp: Nucle 98.7 4.6E-07 9.9E-12 75.1 13.5 127 57-195 13-140 (244)
38 COG5006 rhtA Threonine/homoser 98.5 1.5E-06 3.3E-11 71.4 11.4 126 2-138 154-280 (292)
39 KOG2234 Predicted UDP-galactos 98.4 3.6E-05 7.8E-10 66.1 18.3 176 3-195 22-209 (345)
40 PRK02971 4-amino-4-deoxy-L-ara 98.4 1.7E-06 3.6E-11 64.9 8.8 70 64-139 50-121 (129)
41 KOG4314 Predicted carbohydrate 98.2 1.7E-06 3.6E-11 68.9 5.0 96 73-193 64-159 (290)
42 KOG1441 Glucose-6-phosphate/ph 98.1 4.5E-06 9.9E-11 71.4 6.1 150 14-193 35-187 (316)
43 PF06027 DUF914: Eukaryotic pr 97.9 0.00038 8.3E-09 60.2 12.8 131 1-141 173-306 (334)
44 KOG1444 Nucleotide-sugar trans 97.7 0.0036 7.8E-08 53.3 16.0 162 3-195 15-183 (314)
45 TIGR00688 rarD rarD protein. T 97.7 0.00097 2.1E-08 55.1 12.6 102 2-109 152-255 (256)
46 PF06800 Sugar_transport: Suga 97.7 0.0019 4.2E-08 54.1 13.8 117 58-190 42-159 (269)
47 KOG3912 Predicted integral mem 97.7 0.0014 3E-08 55.1 12.6 173 10-201 17-208 (372)
48 COG2962 RarD Predicted permeas 97.6 0.0031 6.7E-08 53.1 14.5 126 3-139 155-282 (293)
49 KOG2766 Predicted membrane pro 97.6 1.3E-06 2.7E-11 72.0 -6.0 139 25-190 48-187 (336)
50 PF08449 UAA: UAA transporter 97.6 0.0024 5.1E-08 54.3 13.5 130 3-140 161-297 (303)
51 PF10639 UPF0546: Uncharacteri 97.5 0.00062 1.3E-08 49.8 8.0 110 1-137 1-111 (113)
52 PRK09541 emrE multidrug efflux 97.5 0.0008 1.7E-08 49.0 8.3 68 67-140 35-103 (110)
53 PRK10452 multidrug efflux syst 97.5 0.00066 1.4E-08 50.2 8.0 68 67-140 35-103 (120)
54 COG2076 EmrE Membrane transpor 97.5 0.00098 2.1E-08 48.0 8.2 66 68-139 36-102 (106)
55 PRK10650 multidrug efflux syst 97.4 0.0063 1.4E-07 44.2 12.1 64 69-138 42-106 (109)
56 PRK11431 multidrug efflux syst 97.3 0.0018 4E-08 46.7 8.1 65 69-139 36-101 (105)
57 PF00893 Multi_Drug_Res: Small 97.3 0.0013 2.9E-08 46.3 6.8 57 68-130 35-92 (93)
58 PF06800 Sugar_transport: Suga 97.2 0.0042 9E-08 52.1 10.5 124 2-136 144-267 (269)
59 PRK13499 rhamnose-proton sympo 97.0 0.023 5E-07 49.4 13.3 168 2-186 13-191 (345)
60 KOG4510 Permease of the drug/m 96.9 0.00044 9.4E-09 57.7 1.6 123 7-140 202-325 (346)
61 KOG1443 Predicted integral mem 96.8 0.0065 1.4E-07 51.6 7.8 133 25-186 45-181 (349)
62 PRK13499 rhamnose-proton sympo 96.7 0.096 2.1E-06 45.6 14.9 136 3-140 181-341 (345)
63 PF05653 Mg_trans_NIPA: Magnes 96.7 0.0041 9E-08 53.1 6.1 72 64-141 52-123 (300)
64 KOG1441 Glucose-6-phosphate/ph 96.6 0.005 1.1E-07 52.9 6.1 128 3-140 170-307 (316)
65 PF04657 DUF606: Protein of un 96.5 0.023 5E-07 43.0 8.4 103 24-136 29-137 (138)
66 KOG1580 UDP-galactose transpor 95.9 0.023 5.1E-07 46.8 6.1 74 59-139 239-312 (337)
67 KOG2765 Predicted membrane pro 95.7 0.089 1.9E-06 46.0 9.0 134 2-141 253-391 (416)
68 KOG2922 Uncharacterized conser 95.0 0.013 2.9E-07 50.0 1.8 72 64-141 66-137 (335)
69 TIGR00803 nst UDP-galactose tr 94.8 0.12 2.5E-06 41.8 6.8 58 73-136 163-220 (222)
70 KOG1580 UDP-galactose transpor 93.6 0.48 1E-05 39.2 8.0 102 72-193 95-196 (337)
71 COG4975 GlcU Putative glucose 93.3 0.0035 7.7E-08 51.7 -4.8 159 3-188 9-171 (288)
72 KOG1581 UDP-galactose transpor 92.1 0.2 4.4E-06 42.7 4.0 109 22-139 199-312 (327)
73 COG3238 Uncharacterized protei 92.0 1.8 3.8E-05 33.3 8.7 109 24-138 33-144 (150)
74 KOG1581 UDP-galactose transpor 91.3 8.2 0.00018 33.1 12.6 145 24-193 50-196 (327)
75 KOG1583 UDP-N-acetylglucosamin 91.1 0.83 1.8E-05 38.6 6.5 128 54-193 60-188 (330)
76 COG4975 GlcU Putative glucose 90.0 0.25 5.3E-06 41.1 2.5 81 55-139 204-284 (288)
77 KOG1582 UDP-galactose transpor 90.0 1.4 3.1E-05 37.2 7.0 110 22-140 217-332 (367)
78 KOG1442 GDP-fucose transporter 89.7 0.56 1.2E-05 39.6 4.4 89 79-191 119-207 (347)
79 COG5070 VRG4 Nucleotide-sugar 87.4 2 4.4E-05 35.4 6.0 99 77-195 83-181 (309)
80 KOG4831 Unnamed protein [Funct 87.2 0.92 2E-05 32.7 3.6 115 1-138 8-123 (125)
81 COG5070 VRG4 Nucleotide-sugar 86.2 6.6 0.00014 32.4 8.4 109 23-140 183-296 (309)
82 KOG1444 Nucleotide-sugar trans 86.2 6.2 0.00013 33.9 8.7 121 11-139 172-299 (314)
83 KOG3912 Predicted integral mem 86.2 16 0.00035 31.2 10.9 129 3-138 183-332 (372)
84 KOG1443 Predicted integral mem 85.8 13 0.00029 32.0 10.3 107 23-138 195-313 (349)
85 PF06379 RhaT: L-rhamnose-prot 81.8 12 0.00025 32.7 8.6 120 57-187 69-191 (344)
86 PF04142 Nuc_sug_transp: Nucle 76.8 41 0.00089 27.7 11.1 117 2-129 120-242 (244)
87 PF04342 DUF486: Protein of un 72.8 33 0.00071 24.8 7.9 50 82-137 55-105 (108)
88 TIGR00803 nst UDP-galactose tr 72.8 8.4 0.00018 30.9 5.1 94 91-193 7-109 (222)
89 PF02694 UPF0060: Uncharacteri 65.0 7.6 0.00016 28.0 2.8 37 97-139 66-102 (107)
90 COG3169 Uncharacterized protei 63.8 51 0.0011 23.5 10.9 30 103-138 84-113 (116)
91 PF05653 Mg_trans_NIPA: Magnes 62.2 24 0.00053 30.1 6.0 69 71-139 222-291 (300)
92 CHL00196 psbY photosystem II p 56.2 37 0.00079 19.5 4.1 27 169-195 6-32 (36)
93 PF06298 PsbY: Photosystem II 55.1 38 0.00083 19.5 4.0 28 169-196 6-33 (36)
94 COG3086 RseC Positive regulato 51.3 47 0.001 25.4 5.2 35 82-117 68-102 (150)
95 PRK10862 SoxR reducing system 50.4 39 0.00085 25.9 4.9 28 83-110 69-96 (154)
96 KOG1583 UDP-N-acetylglucosamin 49.3 17 0.00036 31.0 2.8 65 69-139 245-313 (330)
97 PF10754 DUF2569: Protein of u 47.9 1.2E+02 0.0026 22.9 9.2 29 166-194 118-146 (149)
98 PRK02237 hypothetical protein; 47.8 1.1E+02 0.0023 22.3 9.8 37 97-139 68-104 (109)
99 PF07857 DUF1632: CEO family ( 47.1 1.6E+02 0.0034 24.7 8.2 179 2-193 6-207 (254)
100 KOG1442 GDP-fucose transporter 44.9 22 0.00048 30.3 2.9 128 4-139 193-326 (347)
101 PF04156 IncA: IncA protein; 43.1 43 0.00094 26.1 4.2 18 124-141 12-29 (191)
102 PF04246 RseC_MucC: Positive r 42.8 59 0.0013 24.0 4.7 26 85-110 64-89 (135)
103 PRK13240 pbsY photosystem II p 41.9 73 0.0016 18.7 4.0 26 170-195 7-32 (40)
104 KOG3817 Uncharacterized conser 39.7 2.2E+02 0.0048 25.3 8.1 86 7-98 200-287 (452)
105 PRK15462 dipeptide/tripeptide 38.5 3.1E+02 0.0068 25.1 11.8 47 91-137 310-359 (493)
106 COG1742 Uncharacterized conser 37.8 20 0.00044 25.8 1.4 34 101-140 71-104 (109)
107 PF09656 PGPGW: Putative trans 33.7 1.2E+02 0.0027 18.9 5.6 45 124-194 5-49 (53)
108 COG4657 RnfA Predicted NADH:ub 31.3 2.6E+02 0.0056 22.0 8.7 64 111-195 88-158 (193)
109 KOG2766 Predicted membrane pro 30.8 3.2E+02 0.0069 23.3 7.5 121 3-139 173-298 (336)
110 PF03116 NQR2_RnfD_RnfE: NQR2, 29.0 3.7E+02 0.0081 23.1 9.1 65 31-101 235-301 (313)
111 PRK11056 hypothetical protein; 26.1 2.7E+02 0.0059 20.5 7.4 44 95-138 36-79 (120)
112 KOG1582 UDP-galactose transpor 24.3 2.9E+02 0.0064 23.7 6.2 142 22-195 70-216 (367)
113 PF07123 PsbW: Photosystem II 23.5 63 0.0014 24.4 2.0 26 166-191 103-128 (138)
114 PF11168 DUF2955: Protein of u 23.4 2.7E+02 0.0058 20.7 5.5 18 169-186 72-89 (140)
115 PF11139 DUF2910: Protein of u 23.3 3.8E+02 0.0082 21.2 11.6 44 96-139 160-210 (214)
116 PLN00082 photosystem II reacti 22.6 53 0.0011 21.4 1.2 26 166-191 31-56 (67)
117 PRK11103 PTS system mannose-sp 22.0 1.7E+02 0.0037 24.9 4.5 25 93-117 238-262 (282)
118 PF03818 MadM: Malonate/sodium 21.3 2.4E+02 0.0052 18.1 4.2 12 108-119 28-39 (60)
119 KOG2922 Uncharacterized conser 20.8 3.4E+02 0.0075 23.6 6.1 67 73-139 238-305 (335)
120 TIGR00828 EIID-AGA PTS system, 20.5 1.9E+02 0.0041 24.4 4.5 25 93-117 228-252 (271)
121 PF07947 YhhN: YhhN-like prote 20.2 4.1E+02 0.0088 20.4 7.0 41 124-186 32-72 (185)
122 cd08760 Cyt_b561_FRRS1_like Eu 20.1 3.9E+02 0.0084 20.7 6.1 27 113-139 65-91 (191)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.94 E-value=5.1e-25 Score=191.14 Aligned_cols=189 Identities=39% Similarity=0.594 Sum_probs=145.7
Q ss_pred CchhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcC-CCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028844 1 MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRS-KGPVLTFSLLCKFFMLGVLGICLVQIF 78 (203)
Q Consensus 1 ~l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~-~~~~~~~~~~~~~~~lgl~g~~l~~~~ 78 (203)
|+.+++.+++..++.|.+++.|++|..+.++|+.+|++++++ .+.+ +|+ +.++.+++++..+.+.|+++ ++++.+
T Consensus 18 ~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~--~~~~~~~~~~~~~~~~l~l~g~~g-~~~~~~ 94 (358)
T PLN00411 18 MLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFT--NRSRSLPPLSVSILSKIGLLGFLG-SMYVIT 94 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHH--HHhcccCcchHHHHHHHHHHHHHH-HHHHHH
Confidence 578999999999999999999999999999999999999998 6554 332 23445688889999999998 788889
Q ss_pred HHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCC--
Q 028844 79 AITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSN-- 156 (203)
Q Consensus 79 ~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~-- 156 (203)
++.|++|+++++++++.+++|+++.+++++++.|+++.+++.+++|++|++++++|+.++...+++.... ++|++..
T Consensus 95 ~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~-~~~~~~~~~ 173 (358)
T PLN00411 95 GYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFV-ASSPPYLNF 173 (358)
T ss_pred HHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccc-ccccccccc
Confidence 9999999999999999999999999999999544444444444449999999999999887544432110 0000000
Q ss_pred -CCC--CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028844 157 -IQL--PVSEYSNWALGGLLLTVTCFSSATWKIFQVQSYF 193 (203)
Q Consensus 157 -~~~--~~~~~~~~~lG~ll~l~aa~~~a~y~il~~~~~~ 193 (203)
... ......+..+|+++.+++++|||+|++++||...
T Consensus 174 ~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~ 213 (358)
T PLN00411 174 RQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMS 213 (358)
T ss_pred cccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0111233567999999999999999999999753
No 2
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.87 E-value=1.1e-20 Score=159.79 Aligned_cols=158 Identities=12% Similarity=0.098 Sum_probs=132.6
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028844 2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI 80 (203)
Q Consensus 2 l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~ 80 (203)
+...++||.+++++|.+.+ ++||.+++++|+.++++++++ ...+ |++ ..+++++.+....|.++...++.+++
T Consensus 14 ~~~~~iWg~~~~~~K~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~~---~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~ 87 (292)
T PRK11272 14 FALYIIWGSTYLVIRIGVE-SWPPLMMAGVRFLIAGILLLAFLLLR---GHP--LPTLRQWLNAALIGLLLLAVGNGMVT 87 (292)
T ss_pred HHHHHHHhhHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHh---CCC--CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999887 499999999999999999988 4432 222 23567778888889887677888999
Q ss_pred HHh-hccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCC
Q 028844 81 TGI-KYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQL 159 (203)
Q Consensus 81 ~gl-~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~ 159 (203)
.+. +++++++++++.++.|+++.+++++ +|||++++ +++|++++++|+.++... +.
T Consensus 88 ~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~------~~~~~~la~~Gv~ll~~~-~~--------------- 144 (292)
T PRK11272 88 VAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKL------EWLGIAIGLAGIVLLNSG-GN--------------- 144 (292)
T ss_pred HHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchh------HHHHHHHHHHhHHHHhcC-cc---------------
Confidence 999 9999999999999999999999985 69999999 999999999999887521 11
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028844 160 PVSEYSNWALGGLLLTVTCFSSATWKIFQVQSY 192 (203)
Q Consensus 160 ~~~~~~~~~lG~ll~l~aa~~~a~y~il~~~~~ 192 (203)
.+....|+++.+++++|||.|.+.+||..
T Consensus 145 ----~~~~~~G~l~~l~a~~~~a~~~~~~~~~~ 173 (292)
T PRK11272 145 ----LSGNPWGAILILIASASWAFGSVWSSRLP 173 (292)
T ss_pred ----cccchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 11234799999999999999999999964
No 3
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.86 E-value=2.4e-20 Score=154.66 Aligned_cols=156 Identities=13% Similarity=0.042 Sum_probs=123.8
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCC-----CCCCCHHH-HHHHHHHHHHHHHH
Q 028844 2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSK-----GPVLTFSL-LCKFFMLGVLGICL 74 (203)
Q Consensus 2 l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~-----~~~~~~~~-~~~~~~lgl~g~~l 74 (203)
++++++||.++++.|. .++ +||.++.++|+.++.+++.+ ...+ ++++ .++.++++ +......|++ ...
T Consensus 8 i~a~~~wg~~~~~~k~-~~~-~~~~~i~~~R~~~a~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~ 82 (256)
T TIGR00688 8 LLASFLFGYMYYYSKL-LKP-LPATDILGHRMIWSFPFMLLSVTLF--RQWAALIERLKRIQKRPLILSLLLCGLL-IGF 82 (256)
T ss_pred HHHHHHHHHHHHHHHH-hcc-CCHHHHHHHHHHHHHHHHHHHHHHH--cchHHHHHHHhCcccchHHHHHHHHHHH-HHH
Confidence 5788999999999998 454 99999999999999988877 4333 2211 01112222 3445566666 478
Q ss_pred HHHHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCC
Q 028844 75 VQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSN 154 (203)
Q Consensus 75 ~~~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~ 154 (203)
++.+++++++++++++|+++.+++|+++++++++++|||++++ +++|++++++|+.++...++
T Consensus 83 ~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~------~~l~~~~~~~Gv~li~~~~~----------- 145 (256)
T TIGR00688 83 NWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRF------QFIAVIIATLGVISNIVLKG----------- 145 (256)
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHHHHHHcC-----------
Confidence 9999999999999999999999999999999999999999999 99999999999988753211
Q ss_pred CCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028844 155 SNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQVQSYF 193 (203)
Q Consensus 155 ~~~~~~~~~~~~~~lG~ll~l~aa~~~a~y~il~~~~~~ 193 (203)
+. . .+.+++++|||.|.+.+||..+
T Consensus 146 ---------~~-~----~~~l~aa~~~a~~~i~~~~~~~ 170 (256)
T TIGR00688 146 ---------SL-P----WEALVLAFSFTAYGLIRKALKN 170 (256)
T ss_pred ---------Cc-h----HHHHHHHHHHHHHHHHHhhcCC
Confidence 11 1 3578899999999999999753
No 4
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.86 E-value=3.6e-20 Score=157.12 Aligned_cols=157 Identities=18% Similarity=0.141 Sum_probs=124.9
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 028844 2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAIT 81 (203)
Q Consensus 2 l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~~ 81 (203)
++++++||.+++++|.+.++ +||..+.++|+.++++.+++ +.+ ++ +.+++ .....|++....++.+++.
T Consensus 10 l~~~~~Wg~~~~~~k~~~~~-~~p~~~~~~R~~~a~~~l~~-~~~---~~---~~~~~---~~~~~g~~~~~~~~~~~~~ 78 (299)
T PRK11453 10 LLVVVVWGLNFVVIKVGLHN-MPPLMLAGLRFMLVAFPAIF-FVA---RP---KVPLN---LLLGYGLTISFGQFAFLFC 78 (299)
T ss_pred HHHHHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHH-Hhc---CC---CCchH---HHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999875 99999999999998877665 222 11 12232 3344566555566778889
Q ss_pred Hhhc-cChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCC
Q 028844 82 GIKY-SSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLP 160 (203)
Q Consensus 82 gl~~-t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~ 160 (203)
++++ .++++++++.+++|+++.+++++++|||++++ +++|++++++|+.++... +.
T Consensus 79 ~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~------~~~~~~l~~~Gv~ll~~~-~~---------------- 135 (299)
T PRK11453 79 AINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGK------QLAGIALAIFGVLVLIED-SL---------------- 135 (299)
T ss_pred HHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHhHHHhccc-cC----------------
Confidence 9998 58899999999999999999999999999999 999999999999887621 11
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028844 161 VSEYSNWALGGLLLTVTCFSSATWKIFQVQSYF 193 (203)
Q Consensus 161 ~~~~~~~~lG~ll~l~aa~~~a~y~il~~~~~~ 193 (203)
+.......|+++.+++++||+.|++++||..+
T Consensus 136 -~~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~ 167 (299)
T PRK11453 136 -NGQHVAMLGFMLTLAAAFSWACGNIFNKKIMS 167 (299)
T ss_pred -CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 01122347999999999999999999999753
No 5
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.86 E-value=2.1e-20 Score=158.37 Aligned_cols=166 Identities=16% Similarity=0.111 Sum_probs=125.2
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 028844 2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAIT 81 (203)
Q Consensus 2 l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~~ 81 (203)
+.+.++||.+++..|.+.++ +||..+.++|+.++++++++ +.+ +++.++.++ +..+.+.++...+..+++.
T Consensus 10 l~a~~~Wg~~~~~~k~~~~~-~~P~~~~~~R~~~a~l~l~~-~~~---~~~~~~~~~----~~~~~~~l~~~~~~~~~~~ 80 (295)
T PRK11689 10 LIAILLWSTMVGLIRGVSES-LGPVGGAAMIYSVSGLLLLL-TVG---FPRLRQFPK----RYLLAGGLLFVSYEICLAL 80 (295)
T ss_pred HHHHHHHHHHHHHHHHHHcc-CChHHHHHHHHHHHHHHHHH-Hcc---ccccccccH----HHHHHHhHHHHHHHHHHHH
Confidence 46789999999999999876 99999999999999999887 221 212122222 2334455566777888888
Q ss_pred Hhhc----cChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCC
Q 028844 82 GIKY----SSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNI 157 (203)
Q Consensus 82 gl~~----t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~ 157 (203)
|+++ +++++++++.+++|+++.+++++++|||++++ +++|++++++|+.++...+ .+.+..+ .
T Consensus 81 a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~~~~-~~~~~~~-~----- 147 (295)
T PRK11689 81 SLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVLGGD-NGLSLAE-L----- 147 (295)
T ss_pred HHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhheecCC-ccchhhh-h-----
Confidence 8765 57788999999999999999999999999999 9999999999998876321 1000000 0
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028844 158 QLPVSEYSNWALGGLLLTVTCFSSATWKIFQVQSY 192 (203)
Q Consensus 158 ~~~~~~~~~~~lG~ll~l~aa~~~a~y~il~~~~~ 192 (203)
.+...+...|+++.++|++|||.|+++.||..
T Consensus 148 ---~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~ 179 (295)
T PRK11689 148 ---INNIASNPLSYGLAFIGAFIWAAYCNVTRKYA 179 (295)
T ss_pred ---hhccccChHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 00011234699999999999999999999975
No 6
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.85 E-value=5.2e-20 Score=152.23 Aligned_cols=152 Identities=18% Similarity=0.119 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028844 8 EVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSS 87 (203)
Q Consensus 8 wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~~gl~~t~ 87 (203)
||.+++..|.+++++.||....+.|+..+.+++.+. .. .+ .+++++.+....|.++..+++.+++.|+++++
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~-~~--~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~ 72 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPL-LR--RR-----PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLP 72 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HH--hc-----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 899999999998877999999999999998888772 22 22 23456677888888888999999999999999
Q ss_pred hhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCchh
Q 028844 88 PTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNW 167 (203)
Q Consensus 88 a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (203)
+++++++.+++|+++.+++++++|||++++ ++.|+.++++|+.++... +. .+.+
T Consensus 73 ~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~------~~~gi~i~~~Gv~li~~~-~~-------------------~~~~ 126 (260)
T TIGR00950 73 VGEAALLLYLAPLYVTLLSDLMGKERPRKL------VLLAAVLGLAGAVLLLSD-GN-------------------LSIN 126 (260)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHhhccC-Cc-------------------cccc
Confidence 999999999999999999999999999999 999999999999887521 11 1234
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028844 168 ALGGLLLTVTCFSSATWKIFQVQSYF 193 (203)
Q Consensus 168 ~lG~ll~l~aa~~~a~y~il~~~~~~ 193 (203)
..|+++.++++++|+.|.+++|+..+
T Consensus 127 ~~G~~~~l~a~~~~a~~~~~~k~~~~ 152 (260)
T TIGR00950 127 PAGLLLGLGSGISFALGTVLYKRLVK 152 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 57999999999999999999999874
No 7
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.82 E-value=2.5e-19 Score=151.85 Aligned_cols=155 Identities=12% Similarity=-0.024 Sum_probs=124.0
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCC--C-CCCHHHHHHHHHHHHHHHHHHHH
Q 028844 2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKG--P-VLTFSLLCKFFMLGVLGICLVQI 77 (203)
Q Consensus 2 l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~--~-~~~~~~~~~~~~lgl~g~~l~~~ 77 (203)
+++.++||.+++..|.. + ++||.++.++|+.++.+++.+ ...+ ++++. + ..+++++.. ...+.++...++.
T Consensus 14 l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 88 (296)
T PRK15430 14 LAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFFMVVLMSIC--RQWSYLKTLIQTPQKIFM-LAVSAVLIGGNWL 88 (296)
T ss_pred HHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHHHHHHHHHH--ccHHHHHHHHcCHHHHHH-HHHHHHHHHHHHH
Confidence 46789999999999985 4 499999999999999998887 4443 21111 0 113444333 3466667788999
Q ss_pred HHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCC
Q 028844 78 FAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNI 157 (203)
Q Consensus 78 ~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~ 157 (203)
++++|++++++++++++.+++|+++.+++++++|||++++ ++.|++++++|+.++...++
T Consensus 89 ~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~------~~~g~~l~~~Gv~li~~~~~-------------- 148 (296)
T PRK15430 89 LFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRM------QWLAVILAICGVLVQLWTFG-------------- 148 (296)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHHHHcC--------------
Confidence 9999999999999999999999999999999999999999 99999999999998763211
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028844 158 QLPVSEYSNWALGGLLLTVTCFSSATWKIFQVQSY 192 (203)
Q Consensus 158 ~~~~~~~~~~~lG~ll~l~aa~~~a~y~il~~~~~ 192 (203)
+ . ..+.++++++||.|++++||..
T Consensus 149 ------~-~----~~~~l~aa~~~a~~~i~~r~~~ 172 (296)
T PRK15430 149 ------S-L----PIIALGLAFSFAFYGLVRKKIA 172 (296)
T ss_pred ------C-c----cHHHHHHHHHHHHHHHHHHhcC
Confidence 1 1 1457889999999999999974
No 8
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.79 E-value=9.2e-18 Score=142.39 Aligned_cols=151 Identities=13% Similarity=0.118 Sum_probs=125.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHh
Q 028844 13 TLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLAS 92 (203)
Q Consensus 13 i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~~gl~~t~a~~as 92 (203)
+..|.++++--+|..+++.|+.++.+.+.+.+.. +.+++++.+++++++++..|+++ +.++.+.+.|++|+++++++
T Consensus 19 ~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~~s~s~~~ 95 (302)
T TIGR00817 19 IYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSS--GLPKRLKISSALLKLLLPVAIVH-TIGHVTSNVSLSKVAVSFTH 95 (302)
T ss_pred HHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHh--CCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhccHHHHH
Confidence 4679888754679999999999998776652111 12233456788999999999997 88899999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCchhhHHHH
Q 028844 93 AMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGL 172 (203)
Q Consensus 93 il~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~l 172 (203)
++.+++|+++++++++++|||++++ ++.|++++++|+.+.. ..+ .+....|++
T Consensus 96 li~~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~~Gv~l~~---~~~------------------~~~~~~G~~ 148 (302)
T TIGR00817 96 TIKAMEPFFSVVLSAFFLGQEFPST------LWLSLLPIVGGVALAS---DTE------------------LSFNWAGFL 148 (302)
T ss_pred HHHhcchHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHhhhc---CCc------------------ccccHHHHH
Confidence 9999999999999999999999999 9999999999997643 111 112357999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028844 173 LLTVTCFSSATWKIFQVQSYF 193 (203)
Q Consensus 173 l~l~aa~~~a~y~il~~~~~~ 193 (203)
+.++|+++|+.|++++||..+
T Consensus 149 ~~l~a~~~~a~~~v~~k~~~~ 169 (302)
T TIGR00817 149 SAMISNITFVSRNIFSKKAMT 169 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999765
No 9
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.73 E-value=1.9e-16 Score=134.03 Aligned_cols=156 Identities=13% Similarity=0.033 Sum_probs=121.4
Q ss_pred CchhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028844 1 MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI 80 (203)
Q Consensus 1 ~l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~ 80 (203)
++++.++|+.+.++.|.+.++ +||..+.++|+.++++++++ +.+ .++. +.++++++.....|++. ...+.+++
T Consensus 17 ~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~-~~~--~~~~--~~~~~~~~~~~~~g~~~-~~~~~~~~ 89 (293)
T PRK10532 17 LLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLILIA-IFK--PWRL--RFAKEQRLPLLFYGVSL-GGMNYLFY 89 (293)
T ss_pred HHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHH-HHh--HHhc--cCCHHHHHHHHHHHHHH-HHHHHHHH
Confidence 357899999999999999887 99999999999999998887 222 1111 23566777777888775 67788899
Q ss_pred HHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCC
Q 028844 81 TGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLP 160 (203)
Q Consensus 81 ~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~ 160 (203)
++++++|++.++++.++.|+++.+++ +||.+ +..++.++++|+.++... +.+
T Consensus 90 ~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~--------~~~~~~i~~~Gv~li~~~-~~~--------------- 141 (293)
T PRK10532 90 LSIQTVPLGIAVALEFTGPLAVALFS----SRRPV--------DFVWVVLAVLGLWFLLPL-GQD--------------- 141 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHh----cCChH--------HHHHHHHHHHHHheeeec-CCC---------------
Confidence 99999999999999999999998876 24433 345677889999876521 111
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028844 161 VSEYSNWALGGLLLTVTCFSSATWKIFQVQSYF 193 (203)
Q Consensus 161 ~~~~~~~~lG~ll~l~aa~~~a~y~il~~~~~~ 193 (203)
.+.....|+++.++++++||.|+++.||..+
T Consensus 142 --~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~ 172 (293)
T PRK10532 142 --VSHVDLTGAALALGAGACWAIYILSGQRAGA 172 (293)
T ss_pred --cccCChHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1112357999999999999999999999754
No 10
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.72 E-value=3.6e-16 Score=131.52 Aligned_cols=159 Identities=9% Similarity=0.073 Sum_probs=121.2
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028844 2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI 80 (203)
Q Consensus 2 l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~ 80 (203)
+.++++|+...+..|...++ .++ ..+++...+.+++.| ...+. .++.++..+ +++......+.++...++.+++
T Consensus 7 ~~aa~~~a~~~~~~k~~~~~-~~~--~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 81 (281)
T TIGR03340 7 VFSALMHAGWNLMAKSHADK-EPD--FLWWALLAHSVLLTPYGLWYL-AQVGWSRLP-ATFWLLLAISAVANMVYFLGLA 81 (281)
T ss_pred HHHHHHHHHHHHHHhhcCCc-hhH--HHHHHHHHHHHHHHHHHHHhc-ccCCCCCcc-hhhHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999965444 344 347777777777777 43320 122222223 3334455556666689999999
Q ss_pred HHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCC
Q 028844 81 TGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLP 160 (203)
Q Consensus 81 ~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~ 160 (203)
.|++++++++++.+.++.|+++.+++++++|||++++ +++|+.+++.|+.++...+ .
T Consensus 82 ~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~------~~~g~~~~~~Gv~ll~~~~-~---------------- 138 (281)
T TIGR03340 82 QAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPL------AWLGILIITLGLLVLGLSR-F---------------- 138 (281)
T ss_pred HHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHhccc-c----------------
Confidence 9999999999999999999999999999999999999 9999999999998876321 1
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028844 161 VSEYSNWALGGLLLTVTCFSSATWKIFQVQS 191 (203)
Q Consensus 161 ~~~~~~~~lG~ll~l~aa~~~a~y~il~~~~ 191 (203)
.. .+..|+.+.+++++||+.|+++.|+.
T Consensus 139 --~~-~~~~g~~~~l~aal~~a~~~i~~k~~ 166 (281)
T TIGR03340 139 --AQ-HRRKAYAWALAAALGTAIYSLSDKAA 166 (281)
T ss_pred --cc-cchhHHHHHHHHHHHHHHhhhhcccc
Confidence 11 12368889999999999999998875
No 11
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.71 E-value=9.2e-16 Score=133.08 Aligned_cols=152 Identities=15% Similarity=0.160 Sum_probs=122.1
Q ss_pred HHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028844 11 MITLGKAAMSSGMS-NFVYVVYYNALGTFILLHYFIYNTYRSKGPVL--TFSLLCKFFMLGVLGICLVQIFAITGIKYSS 87 (203)
Q Consensus 11 ~~i~~k~~~~~~~~-p~~~~~~R~~ia~i~l~~~~~~~~~~~~~~~~--~~~~~~~~~~lgl~g~~l~~~~~~~gl~~t~ 87 (203)
.....|..++. .| |++++++|+.++.++....+.. +.++.++. .+++++.++.+|+++... +...+.++++++
T Consensus 64 ~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~llp~gl~~~~~-~~~~~~sl~~~s 139 (350)
T PTZ00343 64 YVVDNKLALNM-LPLPWTISSLQLFVGWLFALLYWAT--GFRKIPRIKSLKLFLKNFLPQGLCHLFV-HFGAVISMGLGA 139 (350)
T ss_pred HHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHHh--CCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcc
Confidence 34567998886 99 9999999999998876552222 12222333 245778889999998655 445679999999
Q ss_pred hhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCchh
Q 028844 88 PTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNW 167 (203)
Q Consensus 88 a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (203)
++.++++-+++|+++++++++++|||++++ ++.+++++++|+.+.+. .+ .+..
T Consensus 140 vs~~~iika~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~~~---~~------------------~~~~ 192 (350)
T PTZ00343 140 VSFTHVVKAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALASV---KE------------------LHFT 192 (350)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHheec---cc------------------chhH
Confidence 999999999999999999999999999999 99999999999998652 11 1123
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028844 168 ALGGLLLTVTCFSSATWKIFQVQSYF 193 (203)
Q Consensus 168 ~lG~ll~l~aa~~~a~y~il~~~~~~ 193 (203)
..|+++.++|+++||.|+++.||.++
T Consensus 193 ~~G~~~~l~s~~~~a~~~i~~k~~~~ 218 (350)
T PTZ00343 193 WLAFWCAMLSNLGSSLRSIFAKKTMK 218 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57999999999999999999999774
No 12
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.71 E-value=1.1e-16 Score=117.35 Aligned_cols=124 Identities=22% Similarity=0.305 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028844 6 IGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIK 84 (203)
Q Consensus 6 ~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~~gl~ 84 (203)
++||.+.+..|...++ .||....++|+..+++ +++ .... ++++..+.+.+++......|.++...++.+++.|++
T Consensus 1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 76 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLIL--GRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALK 76 (126)
T ss_pred ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhh--ccccccCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence 4799999999998876 9999999999999998 555 4444 333334556777788888999877899999999999
Q ss_pred ccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 028844 85 YSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS 139 (203)
Q Consensus 85 ~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~ 139 (203)
+++++.++.+.+++|+++.++++++++|+++++ +++|+++++.|+.+++
T Consensus 77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 77 YISASIVSILQYLSPVFAAILGWLFLGERPSWR------QIIGIILIIIGVVLIS 125 (126)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 9999999999998764
No 13
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.62 E-value=3.2e-14 Score=118.17 Aligned_cols=163 Identities=21% Similarity=0.213 Sum_probs=126.7
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 028844 2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAIT 81 (203)
Q Consensus 2 l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~~ 81 (203)
++..+.|+.+....|...+...++....+.|+..+.+...+...+ ++....+ ..+.+....+.+.++...++.+++.
T Consensus 13 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (292)
T COG0697 13 LLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL--EPRGLRP-ALRPWLLLLLLALLGLALPFLLLFL 89 (292)
T ss_pred HHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh--hcccccc-cccchHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999987643667777777999998885541111 1111111 1112345667777777899999999
Q ss_pred HhhccChhhHhhhhhhhHHHHHHHHH-HHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCC
Q 028844 82 GIKYSSPTLASAMGNLIPGITFLLAV-FFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLP 160 (203)
Q Consensus 82 gl~~t~a~~asil~~~~Pv~~~ila~-~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~ 160 (203)
++++++++.++.+.++.|+++.++++ ++++||++++ ++.|+.+++.|+.++...++.
T Consensus 90 ~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~~~~~~---------------- 147 (292)
T COG0697 90 ALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLILLGGGG---------------- 147 (292)
T ss_pred HHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHheecCCCc----------------
Confidence 99999999999999999999999997 6779999999 999999999999988632211
Q ss_pred CCCCch-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028844 161 VSEYSN-WALGGLLLTVTCFSSATWKIFQVQSY 192 (203)
Q Consensus 161 ~~~~~~-~~lG~ll~l~aa~~~a~y~il~~~~~ 192 (203)
+.. ...|+.+.++++++|+.|.+.+|+..
T Consensus 148 ---~~~~~~~g~~~~l~a~~~~a~~~~~~~~~~ 177 (292)
T COG0697 148 ---GGILSLLGLLLALAAALLWALYTALVKRLS 177 (292)
T ss_pred ---chhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111 46899999999999999999999876
No 14
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.57 E-value=1.4e-14 Score=106.49 Aligned_cols=128 Identities=14% Similarity=0.151 Sum_probs=111.5
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCC-CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028844 2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKG-PVLTFSLLCKFFMLGVLGICLVQIFA 79 (203)
Q Consensus 2 l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~-~~~~~~~~~~~~~lgl~g~~l~~~~~ 79 (203)
++++++||...++.|++++. +||..-++.|-.+..+++.. .+.. ++.+. ...+.|.|..+.+-|+-+ .+...+|
T Consensus 9 LLsA~fa~L~~iF~KIGl~~-vdp~~At~IRtiVi~~~l~~v~~~~--g~~~~~~~~~~k~~lflilSGla~-glswl~Y 84 (140)
T COG2510 9 LLSALFAGLTPIFAKIGLEG-VDPDFATTIRTIVILIFLLIVLLVT--GNWQAGGEIGPKSWLFLILSGLAG-GLSWLLY 84 (140)
T ss_pred HHHHHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHHHHHHHHhc--CceecccccCcceehhhhHHHHHH-HHHHHHH
Confidence 57899999999999999875 99999999999999988887 5554 33222 224777888888888665 8999999
Q ss_pred HHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 028844 80 ITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS 139 (203)
Q Consensus 80 ~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~ 139 (203)
|.+++.-.++...-+..+.|++++++++++++||++.+ +++|+++..+|+++++
T Consensus 85 f~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~------~~iG~~LI~~Gailvs 138 (140)
T COG2510 85 FRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLP------TWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhCeeeEe
Confidence 99999999999999999999999999999999999999 9999999999998764
No 15
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.57 E-value=2.4e-13 Score=116.84 Aligned_cols=164 Identities=18% Similarity=0.166 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHH-HHHHhhhcC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028844 9 VGMITLGKAAMSSGMS-NFVYVVYYNALGTFILLH-YFIYNTYRS-KGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKY 85 (203)
Q Consensus 9 g~~~i~~k~~~~~~~~-p~~~~~~R~~ia~i~l~~-~~~~~~~~~-~~~~~~~~~~~~~~~lgl~g~~l~~~~~~~gl~~ 85 (203)
.++.+.+....+.+.+ |..-.+.-+..-.++..+ ...+ +++ +..+..+++|++.+++|++= ..++.+...|++|
T Consensus 26 ~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r--~~~~~~~~~~~~~~w~y~lla~~D-v~aN~~~v~a~~y 102 (334)
T PF06027_consen 26 TGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYR--RGFKKWLKVLKRPWWKYFLLALLD-VEANYLVVLAYQY 102 (334)
T ss_pred HhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhc--cccccchhhcchhHHHHHHHHHHH-HHHHHHHHHHhhc
Confidence 3444455444444555 666666666555555555 3443 221 22223345677788889887 6788999999999
Q ss_pred cChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCc
Q 028844 86 SSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYS 165 (203)
Q Consensus 86 t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (203)
|+.+.+.++....-+++++++++++|||.++. |++|++++++|+.+++..|.... +++..+.
T Consensus 103 TsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~lv~~sD~~~~------------~~~~~~~ 164 (334)
T PF06027_consen 103 TSVTSVQLLDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVLVVVSDVLSG------------SDSSSGS 164 (334)
T ss_pred ccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhheeeeccccc------------ccCCCCC
Confidence 99999999999999999999999999999999 99999999999998875442210 0012334
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028844 166 NWALGGLLLTVTCFSSATWKIFQVQSYF 193 (203)
Q Consensus 166 ~~~lG~ll~l~aa~~~a~y~il~~~~~~ 193 (203)
+..+||+++++++++||+++++++++.+
T Consensus 165 ~~i~GDll~l~~a~lya~~nV~~E~~v~ 192 (334)
T PF06027_consen 165 NPILGDLLALLGAILYAVSNVLEEKLVK 192 (334)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5689999999999999999999998654
No 16
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.45 E-value=2.3e-12 Score=106.46 Aligned_cols=123 Identities=19% Similarity=0.235 Sum_probs=105.0
Q ss_pred chhHHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028844 2 ALVEIGEVGMITLGKAAMSSGMS--NFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIF 78 (203)
Q Consensus 2 l~~~~~wg~~~i~~k~~~~~~~~--p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~ 78 (203)
++++++|+.+.+..|...++ .+ +.....+|+.++.+++.+ .... ++. ...+.+++..+...++++....+.+
T Consensus 134 l~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (260)
T TIGR00950 134 LGSGISFALGTVLYKRLVKK-EGPELLQFTGWVLLLGALLLLPFAWFL--GPN--PQALSLQWGALLYLGLIGTALAYFL 208 (260)
T ss_pred HHHHHHHHHHHHHHhHHhhc-CCchHHHHHHHHHHHHHHHHHHHHHhc--CCC--CCcchHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999998754 66 445666789999999888 5443 222 2336677778888999988899999
Q ss_pred HHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHH
Q 028844 79 AITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGA 135 (203)
Q Consensus 79 ~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv 135 (203)
++.++++++++.++.+.+++|+++.++++++++|+++.+ ++.|..+.+.|+
T Consensus 209 ~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~------~~~G~~li~~g~ 259 (260)
T TIGR00950 209 WNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLP------QLIGGALIIAAV 259 (260)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999 999999999986
No 17
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.41 E-value=1.4e-12 Score=95.48 Aligned_cols=103 Identities=20% Similarity=0.333 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHH-HHHHhhhcCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhhhhhhhHHHHHHHH
Q 028844 30 VYYNALGTFILLH-YFIYNTYRSKG--PVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLA 106 (203)
Q Consensus 30 ~~R~~ia~i~l~~-~~~~~~~~~~~--~~~~~~~~~~~~~lgl~g~~l~~~~~~~gl~~t~a~~asil~~~~Pv~~~ila 106 (203)
.+|+..+.+++.. ...+ ++.++ +..+.+.+......|+++...++.++++|+++++ +.++.+.+++|+++.+++
T Consensus 2 a~r~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~ 78 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIR--GRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLS 78 (113)
T ss_pred HHHHHHHHHHHHHHHHHH--ccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHH
Confidence 5799999998888 5554 22111 1122344556667788886789999999999999 588899999999999999
Q ss_pred HHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhc
Q 028844 107 VFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLY 141 (203)
Q Consensus 107 ~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~ 141 (203)
++++|||++++ ++.|+.++++|+.++...
T Consensus 79 ~~~~~er~~~~------~~~a~~l~~~Gv~li~~~ 107 (113)
T PF13536_consen 79 WLFFKERLSPR------RWLAILLILIGVILIAWS 107 (113)
T ss_pred HHHhcCCCCHH------HHHHHHHHHHHHHHHhhh
Confidence 99999999999 999999999999998743
No 18
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.40 E-value=1.1e-11 Score=104.90 Aligned_cols=162 Identities=15% Similarity=0.126 Sum_probs=120.0
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028844 2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI 80 (203)
Q Consensus 2 l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~ 80 (203)
++++++||.+.+..|... +.++.++. |..++.+++.. .... |+.. +.+++.+..-++.|.+ -...+.+++
T Consensus 7 lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~---~~~~-~~~~~~~~~g~l~G~~-w~ig~~~~~ 77 (290)
T TIGR00776 7 LIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIF---VLPE-FWALSIFLVGLLSGAF-WALGQINQF 77 (290)
T ss_pred HHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHH---hCCc-ccccHHHHHHHHHHHH-HHhhhhhHH
Confidence 468899999999999864 58888776 78888887776 3333 2111 1123333333333443 477889999
Q ss_pred HHhhccChhhHhhhhh-hhHHHHHHHHHHHhhhhhhhccccchhH----HHHHHHHHHHHHHHHhccCCCCCCCCCCCCC
Q 028844 81 TGIKYSSPTLASAMGN-LIPGITFLLAVFFRMEKVAIRSRSSQAK----ILGTVVSIAGAFIVSLYKGPPLLGFSSPSNS 155 (203)
Q Consensus 81 ~gl~~t~a~~asil~~-~~Pv~~~ila~~~~~E~~~~~~~~~~~~----~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~ 155 (203)
.++++++.+.|..+.+ +.|++..+.+.+++|||.+++ + ++|++++++|+.++...++.+.
T Consensus 78 ~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~------~~~~~~~g~~l~l~G~~l~~~~~~~~~--------- 142 (290)
T TIGR00776 78 KSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSI------QTLLGLLALILIIIGVYLTSRSKDKSA--------- 142 (290)
T ss_pred HHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchH------HHHHHHHHHHHHHHhHheEEecccccc---------
Confidence 9999999999999988 899999999999999999999 8 9999999999887643221100
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028844 156 NIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQVQS 191 (203)
Q Consensus 156 ~~~~~~~~~~~~~lG~ll~l~aa~~~a~y~il~~~~ 191 (203)
+.++..+...|.++.++++++|+.|.+..|+.
T Consensus 143 ----~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~ 174 (290)
T TIGR00776 143 ----GIKSEFNFKKGILLLLMSTIGYLVYVVVAKAF 174 (290)
T ss_pred ----ccccccchhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 00000234679999999999999999999875
No 19
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.33 E-value=7.6e-11 Score=99.81 Aligned_cols=128 Identities=12% Similarity=0.073 Sum_probs=104.7
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028844 2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI 80 (203)
Q Consensus 2 l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~ 80 (203)
++++++|+.+.+..|...++ .+|..... -..++++.+.+ .... .. ....+...+...+.+|++++.+.+.+|+
T Consensus 154 l~aa~~~a~~~v~~r~~~~~-~~~~~~~~-~~~~~~~~l~~~~~~~--~~--~~~~~~~~~~~~l~lgv~~t~~~~~l~~ 227 (293)
T PRK10532 154 LGAGACWAIYILSGQRAGAE-HGPATVAI-GSLIAALIFVPIGALQ--AG--EALWHWSILPLGLAVAILSTALPYSLEM 227 (293)
T ss_pred HHHHHHHHHHHHHHHHHhcc-CCchHHHH-HHHHHHHHHHHHHHHc--cC--cccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999987554 78877754 44566666666 4432 21 1223555566667899999899999999
Q ss_pred HHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhc
Q 028844 81 TGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLY 141 (203)
Q Consensus 81 ~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~ 141 (203)
+++++.++++++.+.+++|+++.++++++++|+++.. +++|..+.+.|++.....
T Consensus 228 ~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~------~~iG~~lIl~~~~~~~~~ 282 (293)
T PRK10532 228 IALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLI------QWLALGAIIAASMGSTLT 282 (293)
T ss_pred HHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999 999999999999887643
No 20
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.32 E-value=6.8e-11 Score=100.02 Aligned_cols=129 Identities=14% Similarity=0.046 Sum_probs=107.6
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028844 2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI 80 (203)
Q Consensus 2 l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~ 80 (203)
++++++|+.+.+..|.. .. -++.....+++.++++.+.+ .... +.......+.+.+..+..+|++++.+.+.+|+
T Consensus 156 l~a~~~~a~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~l~i~~s~~~~~l~~ 231 (292)
T PRK11272 156 LIASASWAFGSVWSSRL-PL-PVGMMAGAAEMLAAGVVLLIASLLS--GERLTALPTLSGFLALGYLAVFGSIIAISAYM 231 (292)
T ss_pred HHHHHHHHHHHHHHHhc-CC-CcchHHHHHHHHHHHHHHHHHHHHc--CCcccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999885 33 34566778899999888887 4443 22111123567788889999999899999999
Q ss_pred HHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHh
Q 028844 81 TGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSL 140 (203)
Q Consensus 81 ~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~ 140 (203)
+++++.++++++.+.+++|++++++++++++|+++.. +++|.++.+.|+.+...
T Consensus 232 ~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~------~iiG~~lIi~gv~~~~~ 285 (292)
T PRK11272 232 YLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPI------EWLALGVIVFAVVLVTL 285 (292)
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 99999999999988754
No 21
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.26 E-value=4.9e-10 Score=93.31 Aligned_cols=154 Identities=14% Similarity=0.062 Sum_probs=121.4
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCC---CCCCHHHHHHHHHHHHHHHHHHHH
Q 028844 2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKG---PVLTFSLLCKFFMLGVLGICLVQI 77 (203)
Q Consensus 2 l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~---~~~~~~~~~~~~~lgl~g~~l~~~ 77 (203)
+.+.++||..+...|.. ++ .++.++...|.+-+..+++. .... ++++. ...++|.+..+.+.+++- ..+..
T Consensus 13 l~Ay~lwG~lp~y~kll-~~-~~~~eIlahRviwS~~~~l~ll~~~--r~~~~~~~~~~~p~~~~~~~l~a~li-~~nW~ 87 (293)
T COG2962 13 LLAYLLWGLLPLYFKLL-EP-LPATEILAHRVIWSFPFMLALLFLL--RQWRELKQLLKQPKTLLMLALTALLI-GLNWW 87 (293)
T ss_pred HHHHHHHHHHHHHHHHH-cc-CCHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHhCcHHHHHHHHHHHHH-HHHHH
Confidence 46789999999999995 54 99999999999999888877 4333 22221 123455666666667664 89999
Q ss_pred HHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCC
Q 028844 78 FAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNI 157 (203)
Q Consensus 78 ~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~ 157 (203)
.|.++.+.-.+-++|.=.+..|++.++++++++|||+++- |++++.++.+|+.......++
T Consensus 88 lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~------Q~iAV~lA~~GV~~~~~~~g~------------- 148 (293)
T COG2962 88 LFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRL------QWIAVGLAAAGVLIQTWLLGS------------- 148 (293)
T ss_pred HhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHH------HHHHHHHHHHHHHHHHHHcCC-------------
Confidence 9999999999999999999999999999999999999999 999999999999887654332
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028844 158 QLPVSEYSNWALGGLLLTVTCFSSATWKIFQVQS 191 (203)
Q Consensus 158 ~~~~~~~~~~~lG~ll~l~aa~~~a~y~il~~~~ 191 (203)
-.+ ..+.=|++|+.|..+-|+.
T Consensus 149 -------lpw-----val~la~sf~~Ygl~RK~~ 170 (293)
T COG2962 149 -------LPW-----VALALALSFGLYGLLRKKL 170 (293)
T ss_pred -------CcH-----HHHHHHHHHHHHHHHHHhc
Confidence 112 1234488999999885543
No 22
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.21 E-value=3.4e-10 Score=95.89 Aligned_cols=125 Identities=14% Similarity=0.168 Sum_probs=98.1
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028844 2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI 80 (203)
Q Consensus 2 l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~ 80 (203)
++++++|+.+.+..|...+ +.+|..... ..+++.+.+ .... + ......+.+.+..+...|+ ...+.+.+|+
T Consensus 162 l~aa~~~A~~~v~~k~~~~-~~~~~~~~~---~~~~~~l~~~~~~~--~-~~~~~~~~~~~~~l~~~~~-~t~~~~~l~~ 233 (295)
T PRK11689 162 FIGAFIWAAYCNVTRKYAR-GKNGITLFF---ILTALALWIKYFLS--P-QPAMVFSLPAIIKLLLAAA-AMGFGYAAWN 233 (295)
T ss_pred HHHHHHHHHHHHHHhhccC-CCCchhHHH---HHHHHHHHHHHHHh--c-CccccCCHHHHHHHHHHHH-HHHHHHHHHH
Confidence 5788999999999999643 478876532 334444444 3332 2 1112345667777777775 5688999999
Q ss_pred HHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHh
Q 028844 81 TGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSL 140 (203)
Q Consensus 81 ~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~ 140 (203)
.++++.++++++.+.+++|++..++++++++|+++.. +++|.++.+.|+.+...
T Consensus 234 ~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~------~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 234 VGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFS------FWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHhHHHHhh
Confidence 9999999999999999999999999999999999999 99999999999987653
No 23
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.20 E-value=6.6e-10 Score=96.79 Aligned_cols=130 Identities=12% Similarity=0.146 Sum_probs=99.6
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHH-HHHHhhhcCC---C-CCCCHHHHHHHHHHHHHHHHHH
Q 028844 2 ALVEIGEVGMITLGKAAMSSGMSN-FVYVVYYNALGTFILLH-YFIYNTYRSK---G-PVLTFSLLCKFFMLGVLGICLV 75 (203)
Q Consensus 2 l~~~~~wg~~~i~~k~~~~~~~~p-~~~~~~R~~ia~i~l~~-~~~~~~~~~~---~-~~~~~~~~~~~~~lgl~g~~l~ 75 (203)
+.++++|+.+.+..|..... .+| ...+++...++++.+.+ .... ++.. + ...+.. ...++..++. ..+.
T Consensus 195 l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~-~~~i~y~~i~-t~la 269 (358)
T PLN00411 195 TIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIVTSMIGLVV--EKNNPSVWIIHFDIT-LITIVTMAII-TSVY 269 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHHHHHHHHHH--ccCCcccceeccchH-HHHHHHHHHH-HHHH
Confidence 46789999999999987665 644 46677777777766655 4443 3211 1 112333 2334555655 4678
Q ss_pred HHHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhcc
Q 028844 76 QIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYK 142 (203)
Q Consensus 76 ~~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~ 142 (203)
+.++++++++.+|+.++.+.+++|++++++++++++|+++.. +++|.++.+.|+.++...+
T Consensus 270 y~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~------~~iG~~LIl~Gv~l~~~~~ 330 (358)
T PLN00411 270 YVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLG------CLIGGILITLGFYAVMWGK 330 (358)
T ss_pred HHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhhh
Confidence 899999999999999999999999999999999999999999 9999999999999876543
No 24
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.13 E-value=1.7e-10 Score=98.77 Aligned_cols=102 Identities=22% Similarity=0.290 Sum_probs=88.0
Q ss_pred HHHHHHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 028844 73 CLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSP 152 (203)
Q Consensus 73 ~l~~~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~ 152 (203)
++++++++.++.+|+++..+++.++.-+||..++.++..||+++. |.++++++++|+++++..+..+
T Consensus 170 F~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~s------Kllav~~si~GViiVt~~~s~~------- 236 (416)
T KOG2765|consen 170 FLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIVTMGDSKQ------- 236 (416)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEEEeccccc-------
Confidence 788999999999999999999999999999999999999999999 9999999999999887543321
Q ss_pred CCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028844 153 SNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQVQSYF 193 (203)
Q Consensus 153 ~~~~~~~~~~~~~~~~lG~ll~l~aa~~~a~y~il~~~~~~ 193 (203)
.++.......+|+++.+++|+.||+|+++-||..+
T Consensus 237 ------~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~ 271 (416)
T KOG2765|consen 237 ------NSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIG 271 (416)
T ss_pred ------cccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 01123345679999999999999999999988643
No 25
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.12 E-value=2.8e-09 Score=90.41 Aligned_cols=130 Identities=15% Similarity=0.103 Sum_probs=100.9
Q ss_pred chhHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHH-HHHHhhhcCC-----CCCCCHHHHHHHHHHHHHHHH
Q 028844 2 ALVEIGEVGMITLGKAAMSSG--MSNFVYVVYYNALGTFILLH-YFIYNTYRSK-----GPVLTFSLLCKFFMLGVLGIC 73 (203)
Q Consensus 2 l~~~~~wg~~~i~~k~~~~~~--~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~-----~~~~~~~~~~~~~~lgl~g~~ 73 (203)
+.++++|+.+.+..|...++. .+......+-..++.+.+.. .... +... ....+.+.+..++.+|++++.
T Consensus 149 l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~ 226 (299)
T PRK11453 149 LAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLIL--DGSATMIHSLVTIDMTTILSLMYLAFVATI 226 (299)
T ss_pred HHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHh--cCchhhhhhhccCCHHHHHHHHHHHHHHHH
Confidence 578899999999999864431 22334444445554444433 2222 2211 123467788889999999999
Q ss_pred HHHHHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 028844 74 LVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS 139 (203)
Q Consensus 74 l~~~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~ 139 (203)
+.+.+++.++++.++++++.+..++|++..++++++++|+++.. +++|.++.+.|+.+..
T Consensus 227 ~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~------~~iG~~lI~~gv~l~~ 286 (299)
T PRK11453 227 VGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGL------QFLGAVLIMAGLYINV 286 (299)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999 9999999999998764
No 26
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.08 E-value=5.2e-09 Score=85.64 Aligned_cols=143 Identities=15% Similarity=0.106 Sum_probs=109.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHh
Q 028844 13 TLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLAS 92 (203)
Q Consensus 13 i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~~gl~~t~a~~as 92 (203)
-+.|..++. +.|.-.+.+|..++++++++ ++| .. +.+.+++++..+...|..- ...|.+||.+++..|-+.+.
T Consensus 29 s~Ak~LFP~-vG~~g~t~lRl~~aaLIll~-l~R--Pw--r~r~~~~~~~~~~~yGvsL-g~MNl~FY~si~riPlGiAV 101 (292)
T COG5006 29 SFAKSLFPL-VGAAGVTALRLAIAALILLA-LFR--PW--RRRLSKPQRLALLAYGVSL-GGMNLLFYLSIERIPLGIAV 101 (292)
T ss_pred HHHHHHccc-cChhhHHHHHHHHHHHHHHH-Hhh--HH--HhccChhhhHHHHHHHHHH-HHHHHHHHHHHHhccchhhh
Confidence 355666665 99999999999999999997 443 22 2456778888888888865 55678888999999999999
Q ss_pred hhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCchhhHHHH
Q 028844 93 AMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGL 172 (203)
Q Consensus 93 il~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~l 172 (203)
.+.++-|+.+..++ .+| .+ ..+-+.+++.|+.++.-. +. +....+..|..
T Consensus 102 AiEF~GPL~vA~~~----sRr--~~------d~vwvaLAvlGi~lL~p~-~~-----------------~~~~lDp~Gv~ 151 (292)
T COG5006 102 AIEFTGPLAVALLS----SRR--LR------DFVWVALAVLGIWLLLPL-GQ-----------------SVWSLDPVGVA 151 (292)
T ss_pred hhhhccHHHHHHHh----ccc--hh------hHHHHHHHHHHHHhheec-cC-----------------CcCcCCHHHHH
Confidence 99999999877653 122 22 556677788898877522 21 12334578999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028844 173 LLTVTCFSSATWKIFQVQSY 192 (203)
Q Consensus 173 l~l~aa~~~a~y~il~~~~~ 192 (203)
+.+.+..||++|++..+|.-
T Consensus 152 ~Al~AG~~Wa~YIv~G~r~g 171 (292)
T COG5006 152 LALGAGACWALYIVLGQRAG 171 (292)
T ss_pred HHHHHhHHHHHHHHHcchhc
Confidence 99999999999999988854
No 27
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.07 E-value=8.8e-10 Score=92.69 Aligned_cols=126 Identities=17% Similarity=0.133 Sum_probs=90.0
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHHHH-HHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028844 2 ALVEIGEVGMITLGKAAMSSGMSNF----VYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQ 76 (203)
Q Consensus 2 l~~~~~wg~~~i~~k~~~~~~~~p~----~~~~~R~~ia~i~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~ 76 (203)
++++++|+.+.+..|...+ +.+|. ....+.+.+.++.+.+ .... +++. ...+.+.+......+.+...+.+
T Consensus 150 l~aal~~a~~~i~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~s~l~~ 225 (281)
T TIGR03340 150 LAAALGTAIYSLSDKAAAL-GVPAFYSALGYLGIGFLAMGWPFLLLYLKR--HGRS-MFPYARQILPSATLGGLMIGGAY 225 (281)
T ss_pred HHHHHHHHHhhhhcccccc-chhcccccHHHHHHHHHHHHHHHHHHHHHH--hccc-hhhhHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999887533 24442 2333333333222222 2111 1111 11122334455677777778899
Q ss_pred HHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHH
Q 028844 77 IFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFI 137 (203)
Q Consensus 77 ~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~ 137 (203)
.+++.++++.+++.++.+.+++|+++.++++++++|+++.. +++|..+.+.|+.+
T Consensus 226 ~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~------~~iG~~lil~Gv~l 280 (281)
T TIGR03340 226 ALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLT------RLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHhHHh
Confidence 99999999999999999999999999999999999999999 99999999999975
No 28
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.06 E-value=5.9e-11 Score=97.72 Aligned_cols=166 Identities=13% Similarity=0.094 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028844 5 EIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGI 83 (203)
Q Consensus 5 ~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~~gl 83 (203)
...+..+.++.+..+ + .||.+....|++.-.++..| .+.+ +..-.-+...| +.+++-|+.| +.+....++++
T Consensus 46 s~ff~~~~vv~t~~~-e-~~p~e~a~~r~l~~mlit~pcliy~--~~~v~gp~g~R--~~LiLRg~mG-~tgvmlmyya~ 118 (346)
T KOG4510|consen 46 SYFFNSCMVVSTKVL-E-NDPMELASFRLLVRMLITYPCLIYY--MQPVIGPEGKR--KWLILRGFMG-FTGVMLMYYAL 118 (346)
T ss_pred HHHHhhHHHhhhhhh-c-cChhHhhhhhhhhehhhhheEEEEE--eeeeecCCCcE--EEEEeehhhh-hhHHHHHHHHH
Confidence 355566666666554 3 89999999997777666666 3332 11111111222 2345667777 44455667899
Q ss_pred hccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCC-CC
Q 028844 84 KYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLP-VS 162 (203)
Q Consensus 84 ~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~-~~ 162 (203)
+|.+-++|+++.+..|++|.+++|.++|||.++. ..+|..+.+.|+++++- |.+.. +.+..++ .+
T Consensus 119 ~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~------eaL~s~itl~GVVLIvR---PpFlF-----G~~t~g~~~s 184 (346)
T KOG4510|consen 119 MYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKF------EALGSLITLLGVVLIVR---PPFLF-----GDTTEGEDSS 184 (346)
T ss_pred hhcchhheEEEEecChHHHHHHHHHHHcCCCcHH------HHHHHHHhhheEEEEec---CCccc-----CCCccccccc
Confidence 9999999999999999999999999999999999 99999999999998862 22111 0011111 11
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028844 163 EYSNWALGGLLLTVTCFSSATWKIFQVQS 191 (203)
Q Consensus 163 ~~~~~~lG~ll~l~aa~~~a~y~il~~~~ 191 (203)
....+..|.+..+.+++.-|.-.|+.|++
T Consensus 185 ~~~~~~~gt~aai~s~lf~asvyIilR~i 213 (346)
T KOG4510|consen 185 QVEYDIPGTVAAISSVLFGASVYIILRYI 213 (346)
T ss_pred cccccCCchHHHHHhHhhhhhHHHHHHHh
Confidence 11334568888888888888777777766
No 29
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.05 E-value=1.3e-09 Score=92.44 Aligned_cols=132 Identities=18% Similarity=0.193 Sum_probs=99.3
Q ss_pred chhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCC---------CCH-HHHHHHHHHHH
Q 028844 2 ALVEIGEVGMITLGKAAMSS-GMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPV---------LTF-SLLCKFFMLGV 69 (203)
Q Consensus 2 l~~~~~wg~~~i~~k~~~~~-~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~~---------~~~-~~~~~~~~lgl 69 (203)
++++++|+.+.+..|...++ +.||.++..+....+++.+.| .... +...... .+. ..+...+..+.
T Consensus 151 l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (302)
T TIGR00817 151 MISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFIT--EGPPFLPHGFMQAISGVNVTKIYTVSLVAAM 228 (302)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHH--cchHHHHHHHHHhhcccCchHHHHHHHHHHH
Confidence 56889999999999987652 499999999999999999998 5543 2111000 011 11111222333
Q ss_pred HHHHHHHHHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhc
Q 028844 70 LGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLY 141 (203)
Q Consensus 70 ~g~~l~~~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~ 141 (203)
......+.+++.++++++|+.+++..++.|++++++++++++|+++.+ +++|..++++|+.+....
T Consensus 229 ~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~------~~~G~~lil~Gv~l~~~~ 294 (302)
T TIGR00817 229 GFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQ------QVFGTGIAIAGVFLYSRV 294 (302)
T ss_pred HHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchh------HHHHHHHHHHHHHHHHHH
Confidence 222334467778999999999999999999999999999999999999 999999999999887643
No 30
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.88 E-value=6.2e-08 Score=82.13 Aligned_cols=129 Identities=13% Similarity=0.050 Sum_probs=88.3
Q ss_pred chhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028844 2 ALVEIGEVGMITLGKAAMSSG-MSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI 80 (203)
Q Consensus 2 l~~~~~wg~~~i~~k~~~~~~-~~p~~~~~~R~~ia~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~ 80 (203)
+.++++|+.+.+..|....+. .++.....+-..++...+.+ .... ........+...+..+...|+. ....+.+++
T Consensus 155 l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~g~~-t~i~~~~~~ 231 (296)
T PRK15430 155 LGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFA-IADS-STSHMGQNPMSLNLLLIAAGIV-TTVPLLCFT 231 (296)
T ss_pred HHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHH-HccC-CcccccCCcHHHHHHHHHHHHH-HHHHHHHHH
Confidence 467899999999998863221 22233333333343333222 1110 0000111122233334445554 478899999
Q ss_pred HHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 028844 81 TGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS 139 (203)
Q Consensus 81 ~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~ 139 (203)
.++++.+++.++.+.+++|++..++++++++|+++.. +++|..+.+.|+.++.
T Consensus 232 ~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~------~~~G~~lI~~~~~v~~ 284 (296)
T PRK15430 232 AAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGAD------KMVTFAFIWVALAIFV 284 (296)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 9999999999988765
No 31
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.87 E-value=1.4e-07 Score=80.18 Aligned_cols=152 Identities=17% Similarity=0.142 Sum_probs=113.9
Q ss_pred CHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhhhhhhhHHHH
Q 028844 24 SNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGIT 102 (203)
Q Consensus 24 ~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~~gl~~t~a~~asil~~~~Pv~~ 102 (203)
.|..+++..+....+.-.+ .... ++++.++.+ +......+++. .+...+.+.+++|.|...-.++-+..|+.+
T Consensus 31 ~~~~lt~~q~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~al~~i~~p~~~~~ks~~~i~v 104 (303)
T PF08449_consen 31 FPLFLTFVQFAFNALFSFILLSLF--KFPKSRKIP---LKKYAILSFLF-FLASVLSNAALKYISYPTQIVFKSSKPIPV 104 (303)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhc--cccCCCcCh---HHHHHHHHHHH-HHHHHHHHHHHHhCChHHHHHHhhhHHHHH
Confidence 3889999999998887776 3332 212222233 34556666664 788899999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHH
Q 028844 103 FLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSA 182 (203)
Q Consensus 103 ~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~ll~l~aa~~~a 182 (203)
++++++++|+|.+++ |++++++..+|+.+....+..+.. .+.....++..|+++++.+.++-+
T Consensus 105 mi~~~l~~~k~y~~~------~~~~v~li~~Gv~~~~~~~~~~~~-----------~~~~~~~~~~~G~~ll~~sl~~~a 167 (303)
T PF08449_consen 105 MILGVLILGKRYSRR------QYLSVLLITIGVAIFTLSDSSSSS-----------SSNSSSFSSALGIILLLLSLLLDA 167 (303)
T ss_pred HHHHHHhcCccccHH------HHHHHHHHHhhHheeeeccccccc-----------ccccccccchhHHHHHHHHHHHHH
Confidence 999999999999999 999999999999887654322100 001111223359999999999999
Q ss_pred HHHHHHHHHHHHhhhc
Q 028844 183 TWKIFQVQSYFLALLW 198 (203)
Q Consensus 183 ~y~il~~~~~~~~~~~ 198 (203)
...++|+|..+.-..-
T Consensus 168 ~~~~~qe~~~~~~~~~ 183 (303)
T PF08449_consen 168 FTGVYQEKLFKKYGKS 183 (303)
T ss_pred HHHHHHHHHHHHhCCc
Confidence 9999999988654433
No 32
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.81 E-value=2.3e-07 Score=70.55 Aligned_cols=127 Identities=20% Similarity=0.269 Sum_probs=104.5
Q ss_pred chhHHHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCC-------C----CCHHHHHH
Q 028844 2 ALVEIGEVGMITLGKAAMSS------GMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGP-------V----LTFSLLCK 63 (203)
Q Consensus 2 l~~~~~wg~~~i~~k~~~~~------~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~-------~----~~~~~~~~ 63 (203)
+.+.++.+...+..|..++. ..+|.++..+-...+.+++.| .... ++.+.. + .+.+.+..
T Consensus 6 l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~--e~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (153)
T PF03151_consen 6 LASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLL--EGPQLSSFFSEIFGEELSSDPNFIFL 83 (153)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHH--hhhhhhhHHHHhhhhhhcchHHHHHH
Confidence 46778888999999888776 699999999999999999999 6665 332210 0 02344555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHH
Q 028844 64 FFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFI 137 (203)
Q Consensus 64 ~~~lgl~g~~l~~~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~ 137 (203)
++..|+++ ...+...+.-+++++|...++..+.-.+.+.++++++++|+++.+ ++.|+++++.|...
T Consensus 84 ~~~~~~~~-~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~------~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 84 LILSGLLA-FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPL------QIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHH-HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHH------HHHHHHHHHHHHhe
Confidence 56666665 788899999999999999999999999999999999999999999 99999999999864
No 33
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.81 E-value=2.3e-07 Score=80.60 Aligned_cols=130 Identities=15% Similarity=0.154 Sum_probs=94.4
Q ss_pred chhHHHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCC-----------CCCCHHHHHH
Q 028844 2 ALVEIGEVGMITLGKAAMSS------GMSNFVYVVYYNALGTFILLH-YFIYNTYRSKG-----------PVLTFSLLCK 63 (203)
Q Consensus 2 l~~~~~wg~~~i~~k~~~~~------~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~-----------~~~~~~~~~~ 63 (203)
++++++|+...+..|..++. ..++..+..+-..+++++++| .... +.... ..........
T Consensus 200 l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~--e~~~~~~~~~~~~~~~~~~~~~~~l~ 277 (350)
T PTZ00343 200 MLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFF--EGKKWVPVWTNYTANMTNYTKGIIIF 277 (350)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHhhhcccccchHHHHH
Confidence 46889999999999998753 256777777778889999888 5533 21100 0111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 028844 64 FFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS 139 (203)
Q Consensus 64 ~~~lgl~g~~l~~~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~ 139 (203)
..+.+.+...+.+.+.+.+++++++.++++..++.|+++.++++++++|+++.. +++|.++++.|+.+..
T Consensus 278 ~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~------~~iG~~lii~Gv~lYs 347 (350)
T PTZ00343 278 KIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLL------GYLGMAVAILGALLYS 347 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchH------hHHHHHHHHHHHHHHh
Confidence 222222223444555557999999999999999999999999999999999999 9999999999998754
No 34
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.79 E-value=3.3e-07 Score=75.90 Aligned_cols=126 Identities=17% Similarity=0.190 Sum_probs=99.5
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028844 2 ALVEIGEVGMITLGKAAMSSGMSNFVYVV-YYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI 80 (203)
Q Consensus 2 l~~~~~wg~~~i~~k~~~~~~~~p~~~~~-~R~~ia~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~ 80 (203)
+.+++.|+.+.+..|... ..++..... +.+..+.....+ ... .... ...+.+.+......|+++....+.+++
T Consensus 160 l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~-~~~~~~~~~~~~~~g~~~~~i~~~~~~ 233 (292)
T COG0697 160 LAAALLWALYTALVKRLS--RLGPVTLALLLQLLLALLLLLL-FFL--SGFG-APILSRAWLLLLYLGVFSTGLAYLLWY 233 (292)
T ss_pred HHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHH-HHh--cccc-ccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999998765 377777777 444422222222 221 1111 234567788889999998778999999
Q ss_pred HHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 028844 81 TGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS 139 (203)
Q Consensus 81 ~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~ 139 (203)
.++++.+++.++.+..++|++..++++++++|+++.+ +++|..+.+.|+.+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~------~~~G~~li~~g~~l~~ 286 (292)
T COG0697 234 YALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPA------QLLGAALVVLGVLLAS 286 (292)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999 9999999999998765
No 35
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.79 E-value=1.5e-07 Score=68.75 Aligned_cols=68 Identities=22% Similarity=0.149 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 028844 66 MLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS 139 (203)
Q Consensus 66 ~lgl~g~~l~~~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~ 139 (203)
..++++..+.+.++..++++.|.+.|-.+.++.|+++.+++++++|||++.+ |++|+.+.++|++++.
T Consensus 41 ~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 41 GLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 3444667789999999999999999999999999999999999999999999 9999999999998764
No 36
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.72 E-value=1.8e-07 Score=79.25 Aligned_cols=122 Identities=16% Similarity=0.193 Sum_probs=94.0
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCHHHHHHHHH---HHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028844 2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYN---ALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIF 78 (203)
Q Consensus 2 l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~---~ia~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~ 78 (203)
+++.+.|+.+.+..|.. +.||.+..+... .+++.++.+.+ + +. ++. +.+.....++.|++ ....+.+
T Consensus 158 l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~-~--~~--~~~-~~~~~~~~~~~Gi~-~~ia~~~ 227 (290)
T TIGR00776 158 LMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH-I--LA--KPL-KKYAILLNILPGLM-WGIGNFF 227 (290)
T ss_pred HHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH-h--cc--cch-HHHHHHHHHHHHHH-HHHHHHH
Confidence 46788999999999974 389998855554 44444444311 1 11 111 23333445558888 4888999
Q ss_pred HHHHhh-ccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHH----HHHHHHHHHHHHHH
Q 028844 79 AITGIK-YSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKI----LGTVVSIAGAFIVS 139 (203)
Q Consensus 79 ~~~gl~-~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~----~G~~l~~~Gv~~l~ 139 (203)
|+.|.+ +.+++.++++.+.+|+...+.+++++||+.+++ ++ +|.++.+.|+.++.
T Consensus 228 y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~------~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 228 YLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKR------EMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcc------eeehhHHHHHHHHHHHHHHh
Confidence 999999 999999999999999999999999999999999 99 99999999998764
No 37
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=98.71 E-value=4.6e-07 Score=75.07 Aligned_cols=127 Identities=16% Similarity=0.151 Sum_probs=100.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHH
Q 028844 57 TFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAF 136 (203)
Q Consensus 57 ~~~~~~~~~~lgl~g~~l~~~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~ 136 (203)
++|+..++.+-+++- .+++.+.+.++++.+|+.-.++..+-.++|++++++++|+|++++ ||.++.+.+.|+.
T Consensus 13 ~~~~~~~~~vPA~lY-~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~------qW~aL~lL~~Gv~ 85 (244)
T PF04142_consen 13 SPKDTLKLAVPALLY-AIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRR------QWLALFLLVAGVV 85 (244)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHh
Confidence 566778888888884 899999999999999999999999999999999999999999999 9999999999998
Q ss_pred HHHhccCCCCCCCCCCCCCCCCC-CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028844 137 IVSLYKGPPLLGFSSPSNSNIQL-PVSEYSNWALGGLLLTVTCFSSATWKIFQVQSYFLA 195 (203)
Q Consensus 137 ~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lG~ll~l~aa~~~a~y~il~~~~~~~~ 195 (203)
++...+.... +.+..+.. ......+...|.++.++++++-++-.++..|+++..
T Consensus 86 lv~~~~~~~~-----~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~ 140 (244)
T PF04142_consen 86 LVQLSSSQSS-----DNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRS 140 (244)
T ss_pred eeecCCcccc-----ccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8653221110 00000000 011234467999999999999999999999987765
No 38
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.53 E-value=1.5e-06 Score=71.41 Aligned_cols=126 Identities=17% Similarity=0.067 Sum_probs=104.9
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028844 2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI 80 (203)
Q Consensus 2 l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~ 80 (203)
+.+..+|+.+.+..|.+-+. .+-..-+..-+.+|+++.+| .... . ...-.+++....-...|+++..+.+.+..
T Consensus 154 l~AG~~Wa~YIv~G~r~g~~-~~g~~g~a~gm~vAaviv~Pig~~~--a--g~~l~~p~ll~laLgvavlSSalPYsLEm 228 (292)
T COG5006 154 LGAGACWALYIVLGQRAGRA-EHGTAGVAVGMLVAALIVLPIGAAQ--A--GPALFSPSLLPLALGVAVLSSALPYSLEM 228 (292)
T ss_pred HHHhHHHHHHHHHcchhccc-CCCchHHHHHHHHHHHHHhhhhhhh--c--chhhcChHHHHHHHHHHHHhcccchHHHH
Confidence 35678999999999987543 66677778889999999999 4432 1 11224566666667888999999999999
Q ss_pred HHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 028844 81 TGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIV 138 (203)
Q Consensus 81 ~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l 138 (203)
.++++.|...-+++.+++|.+.++.++++++|+++.. ||.|+...+.+..-.
T Consensus 229 iAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~------qwlaI~~ViaAsaG~ 280 (292)
T COG5006 229 IALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLI------QWLAIAAVIAASAGS 280 (292)
T ss_pred HHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999 999999988877643
No 39
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=98.45 E-value=3.6e-05 Score=66.11 Aligned_cols=176 Identities=14% Similarity=0.068 Sum_probs=129.9
Q ss_pred hhHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHHH-HHHHhhh--cCCCCC------CCHHHHHHHHHHHHH
Q 028844 3 LVEIGEVGMITLGKAAMSSG---MSNFVYVVYYNALGTFILLH-YFIYNTY--RSKGPV------LTFSLLCKFFMLGVL 70 (203)
Q Consensus 3 ~~~~~wg~~~i~~k~~~~~~---~~p~~~~~~R~~ia~i~l~~-~~~~~~~--~~~~~~------~~~~~~~~~~~lgl~ 70 (203)
...+.+++..+..|++-..+ +.|.+.++.--.+-.++... .+...+. ++.... .++++.....+-+++
T Consensus 22 ~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~vPa~i 101 (345)
T KOG2234|consen 22 VLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSVPALI 101 (345)
T ss_pred HHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHHHHHH
Confidence 45667788888889886655 77888888777777666665 3332101 111111 234456667777777
Q ss_pred HHHHHHHHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 028844 71 GICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFS 150 (203)
Q Consensus 71 g~~l~~~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~ 150 (203)
- ++++-+++.++.+.+|+.-.+..++--+.|+++..+++++|++++ ||.++++.++|+.++.....+.. ..+
T Consensus 102 Y-alqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~------Qw~Al~lL~~Gv~~vQ~~~~~~~-~a~ 173 (345)
T KOG2234|consen 102 Y-ALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRL------QWMALVLLFAGVALVQLPSLSPT-GAK 173 (345)
T ss_pred H-HHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHHHhccCCCCC-Ccc
Confidence 4 788889999999999999999999999999999999999999999 99999999999998863222110 000
Q ss_pred CCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028844 151 SPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQVQSYFLA 195 (203)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~lG~ll~l~aa~~~a~y~il~~~~~~~~ 195 (203)
+.....+...|....+.++++-+.-.++-.|+++..
T Consensus 174 ---------~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s 209 (345)
T KOG2234|consen 174 ---------SESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGS 209 (345)
T ss_pred ---------CCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 012345667999999999999999999998888653
No 40
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.43 E-value=1.7e-06 Score=64.91 Aligned_cols=70 Identities=20% Similarity=0.408 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhhHhhhhhhhHHHHHHHHHH--HhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 028844 64 FFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVF--FRMEKVAIRSRSSQAKILGTVVSIAGAFIVS 139 (203)
Q Consensus 64 ~~~lgl~g~~l~~~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~--~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~ 139 (203)
.+.+|+++..+.+.++..++++.+++.|.-+.+..++++.+.++. +++|+++.+ |++|+.+.++|+.++.
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~ 121 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLIN 121 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence 567888888999999999999999999999999999999888885 899999999 9999999999999875
No 41
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.24 E-value=1.7e-06 Score=68.92 Aligned_cols=96 Identities=19% Similarity=0.184 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 028844 73 CLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSP 152 (203)
Q Consensus 73 ~l~~~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~ 152 (203)
++.++.|..+++..+++.++.+....--|+.+++++.+++|+... |+++.++++.|++.+...+
T Consensus 64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~------kIlaailAI~GiVmiay~D---------- 127 (290)
T KOG4314|consen 64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGF------KILAAILAIGGIVMIAYAD---------- 127 (290)
T ss_pred ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhh------hHHHHHHHhCcEEEEEecc----------
Confidence 567899999999999999999999999999999999999999999 9999999999998876332
Q ss_pred CCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028844 153 SNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQVQSYF 193 (203)
Q Consensus 153 ~~~~~~~~~~~~~~~~lG~ll~l~aa~~~a~y~il~~~~~~ 193 (203)
++..+...|..+.+.+++.-|.|-++-|+...
T Consensus 128 ---------N~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iG 159 (290)
T KOG4314|consen 128 ---------NEHADEIIGIACAVGSAFMAALYKVLFKMFIG 159 (290)
T ss_pred ---------chhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 23445679999999999999999999988754
No 42
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=98.14 E-value=4.5e-06 Score=71.40 Aligned_cols=150 Identities=17% Similarity=0.178 Sum_probs=115.4
Q ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhh
Q 028844 14 LGKAAMS--SGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTL 90 (203)
Q Consensus 14 ~~k~~~~--~~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~~gl~~t~a~~ 90 (203)
..|..++ +---|.+++..++..+.+.... -.++ ..+..+..++..+..++-+|++- ++...+-+.++++.+++.
T Consensus 35 ~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~--~~~~~~~~~~~~~~~llpl~~~~-~~~~v~~n~Sl~~v~VsF 111 (316)
T KOG1441|consen 35 LNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLK--LVPPSKISSKLPLRTLLPLGLVF-CISHVLGNVSLSYVPVSF 111 (316)
T ss_pred eeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhc--CCCCCccccccchHHHHHHHHHH-HHHHHhcchhhhccchhH
Confidence 3466666 4355889999988888887776 3332 12211111333556667777775 777888899999999999
Q ss_pred HhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCchhhHH
Q 028844 91 ASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALG 170 (203)
Q Consensus 91 asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG 170 (203)
.-.+=+++|+++.++++++.+|+.+++ ....++....|+.+.+..+ ..-+..|
T Consensus 112 ~q~iKa~~P~~tvl~~~~~~~~~~s~~------~~lsL~piv~GV~ias~~e---------------------~~fn~~G 164 (316)
T KOG1441|consen 112 YQTIKALMPPFTVLLSVLLLGKTYSSM------TYLSLLPIVFGVAIASVTE---------------------LSFNLFG 164 (316)
T ss_pred HHHHHhhcchhHHHHHHHHhCCCCcce------EEEEEEEeeeeEEEeeecc---------------------ccccHHH
Confidence 999999999999999999999999999 8888888888887654321 2234689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028844 171 GLLLTVTCFSSATWKIFQVQSYF 193 (203)
Q Consensus 171 ~ll~l~aa~~~a~y~il~~~~~~ 193 (203)
....+.+.+..+...+++|+++.
T Consensus 165 ~i~a~~s~~~~al~~I~~~~ll~ 187 (316)
T KOG1441|consen 165 FISAMISNLAFALRNILSKKLLT 187 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999883
No 43
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.86 E-value=0.00038 Score=60.20 Aligned_cols=131 Identities=16% Similarity=0.048 Sum_probs=96.8
Q ss_pred CchhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCC--CCHHHHHHHHHHHHHHHHHHHH
Q 028844 1 MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPV--LTFSLLCKFFMLGVLGICLVQI 77 (203)
Q Consensus 1 ~l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~~--~~~~~~~~~~~lgl~g~~l~~~ 77 (203)
++.++++||.+.+.-+....+ .|+.++...=-+.+.++..+ .... +++...+ .+.+....++..++ +.+..+.
T Consensus 173 ~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~Glfg~ii~~iq~~il--e~~~i~~~~w~~~~~~~~v~~~~-~lf~~y~ 248 (334)
T PF06027_consen 173 ALLGAILYAVSNVLEEKLVKK-APRVEFLGMLGLFGFIISGIQLAIL--ERSGIESIHWTSQVIGLLVGYAL-CLFLFYS 248 (334)
T ss_pred HHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHhe--ehhhhhccCCChhhHHHHHHHHH-HHHHHHH
Confidence 367899999999999988765 88888777666777777777 5544 5544332 34444333332222 3355566
Q ss_pred HHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhc
Q 028844 78 FAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLY 141 (203)
Q Consensus 78 ~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~ 141 (203)
+.-..+++++|+...+=.-+..++..+..++++||++++. .++|.++.++|.++....
T Consensus 249 l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~l------y~~af~lIiiG~vvy~~~ 306 (334)
T PF06027_consen 249 LVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWL------YILAFALIIIGFVVYNLA 306 (334)
T ss_pred HHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHH------HHHHHHHHHHHhheEEcc
Confidence 6778899999887666666788899999999999999999 999999999999886543
No 44
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=0.0036 Score=53.28 Aligned_cols=162 Identities=14% Similarity=0.092 Sum_probs=115.4
Q ss_pred hhHHHHHHHHH----HHHHHHhC-CCCH-HHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 028844 3 LVEIGEVGMIT----LGKAAMSS-GMSN-FVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLV 75 (203)
Q Consensus 3 ~~~~~wg~~~i----~~k~~~~~-~~~p-~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~ 75 (203)
.+++.|+.+.. +-|..+.. +.|. +.+..++.....+.+.. -.. +--+.+..|++..+..+=..++- .+.
T Consensus 15 ~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~---~lv~~~~l~~~~~kk~~P~~~lf-~~~ 90 (314)
T KOG1444|consen 15 LSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRL---GLVNFRPLDLRTAKKWFPVSLLF-VGM 90 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHh---ceeecCCcChHHHHHHccHHHHH-HHH
Confidence 45666665443 45777765 2332 23334777777666665 111 11123456777666666666664 566
Q ss_pred HHHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCC
Q 028844 76 QIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNS 155 (203)
Q Consensus 76 ~~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~ 155 (203)
...-..+++|.+...-+++=+.+|+++++.-..+++.|++.+ .+..+....+|.......+-
T Consensus 91 i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~------v~~Sv~~m~~~s~~~~~~d~------------ 152 (314)
T KOG1444|consen 91 LFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNK------VWASVFAMIIGSVAAAFTDL------------ 152 (314)
T ss_pred HHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhh------HHHHHHHHHHHHHhhccccc------------
Confidence 666778899999999999999999999999999999888887 99999999988876542211
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028844 156 NIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQVQSYFLA 195 (203)
Q Consensus 156 ~~~~~~~~~~~~~lG~ll~l~aa~~~a~y~il~~~~~~~~ 195 (203)
.. +..|..+.+..+++-+.|.+..|+-.+..
T Consensus 153 --------sf-~~~gY~w~~~n~~~~a~~~v~~kk~vd~~ 183 (314)
T KOG1444|consen 153 --------SF-NLRGYSWALANCLTTAAFVVYVKKSVDSA 183 (314)
T ss_pred --------ee-cchhHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 11 23599999999999999999999987654
No 45
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=97.71 E-value=0.00097 Score=55.08 Aligned_cols=102 Identities=9% Similarity=0.013 Sum_probs=66.7
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCC-CCHHHHHHHHHHHHHHHHHHHHHH
Q 028844 2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPV-LTFSLLCKFFMLGVLGICLVQIFA 79 (203)
Q Consensus 2 l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~~-~~~~~~~~~~~lgl~g~~l~~~~~ 79 (203)
+.++++|+.+.+..|...+ .++......... ...+..+ .... ....... ...++|..++..|++ ....+.++
T Consensus 152 l~aa~~~a~~~i~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~g~~-t~i~~~l~ 225 (256)
T TIGR00688 152 LVLAFSFTAYGLIRKALKN--TDLAGFCLETLS-LMPVAIYYLLQT--DFATVQQTNPFPIWLLLVLAGLI-TGTPLLAF 225 (256)
T ss_pred HHHHHHHHHHHHHHhhcCC--CCcchHHHHHHH-HHHHHHHHHHHh--ccCcccccCchhHHHHHHHHHHH-HHHHHHHH
Confidence 4678999999999988643 233222221111 1111111 1111 1111111 123477888888887 57899999
Q ss_pred HHHhhccChhhHhhhhhhhHHHHHHHHHHH
Q 028844 80 ITGIKYSSPTLASAMGNLIPGITFLLAVFF 109 (203)
Q Consensus 80 ~~gl~~t~a~~asil~~~~Pv~~~ila~~~ 109 (203)
+.|+++.+++.++.+.+++|+++.+++.+.
T Consensus 226 ~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 226 VIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998764
No 46
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.67 E-value=0.0019 Score=54.10 Aligned_cols=117 Identities=19% Similarity=0.123 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhhhhh-hhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHH
Q 028844 58 FSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGN-LIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAF 136 (203)
Q Consensus 58 ~~~~~~~~~lgl~g~~l~~~~~~~gl~~t~a~~asil~~-~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~ 136 (203)
.+.+..-++.|++- ...|..++.+.++.+.+.+--+.. ++=+.+.+.++++|+|.-+.+.+ ..-..++++.++|+.
T Consensus 42 ~~~~~~~~lsG~~W-~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~--~~G~~Al~liiiGv~ 118 (269)
T PF06800_consen 42 GTSFIVAFLSGAFW-AIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQK--IIGFLALVLIIIGVI 118 (269)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchH--HHHHHHHHHHHHHHH
Confidence 46667777777775 788999999999999999998864 77788999999999999887621 112347778888887
Q ss_pred HHHhccCCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 028844 137 IVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQVQ 190 (203)
Q Consensus 137 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~ll~l~aa~~~a~y~il~~~ 190 (203)
+-+..++.+. ..++..+...|...++++.+.|..|.++.+-
T Consensus 119 lts~~~~~~~-------------~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~ 159 (269)
T PF06800_consen 119 LTSYQDKKSD-------------KSSSKSNMKKGILALLISTIGYWIYSVIPKA 159 (269)
T ss_pred Hhcccccccc-------------ccccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 7664433210 0012345568999999999999999998554
No 47
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=97.67 E-value=0.0014 Score=55.12 Aligned_cols=173 Identities=16% Similarity=0.099 Sum_probs=114.4
Q ss_pred HHHHHHHHHHh---CCCC----HHHHHHHHHHHHHHHHHH-HHHHhhh-cCCC-C-------CC--CHHHHHHHHHHHHH
Q 028844 10 GMITLGKAAMS---SGMS----NFVYVVYYNALGTFILLH-YFIYNTY-RSKG-P-------VL--TFSLLCKFFMLGVL 70 (203)
Q Consensus 10 ~~~i~~k~~~~---~~~~----p~~~~~~R~~ia~i~l~~-~~~~~~~-~~~~-~-------~~--~~~~~~~~~~lgl~ 70 (203)
.+.++.|.+-+ +|.| |+.-+..-|+--..++.. .+.+++. ++.. . .. +.+. ..++.-+++
T Consensus 17 ~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p-~lfl~Pal~ 95 (372)
T KOG3912|consen 17 FNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNP-VLFLPPALC 95 (372)
T ss_pred HHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCc-ceecChHHH
Confidence 56777887643 2333 555555555555566666 4444110 0000 0 00 1111 112223344
Q ss_pred HHHHHHHHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 028844 71 GICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFS 150 (203)
Q Consensus 71 g~~l~~~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~ 150 (203)
- .....+.+.|+.+|+|+.-..+=...-+|+.+++.-+++.+++.+ ||+|+.....|++++...+-..
T Consensus 96 D-i~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg~~d~~~----- 163 (372)
T KOG3912|consen 96 D-IAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVGSLDVHL----- 163 (372)
T ss_pred H-HhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheeeeeeccc-----
Confidence 3 455677889999999998888888888999999999999999999 9999999999998874321100
Q ss_pred CCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 028844 151 SPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQVQSYFLALLWPMQ 201 (203)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~lG~ll~l~aa~~~a~y~il~~~~~~~~~~~~~~ 201 (203)
+.++-...++-..||++.+.+-+.-|.-+++-.|.+.-.-+.|.|
T Consensus 164 ------~~~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~ 208 (372)
T KOG3912|consen 164 ------VTDPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQ 208 (372)
T ss_pred ------ccCCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHH
Confidence 000011124567999999999999999999998888877777766
No 48
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=97.64 E-value=0.0031 Score=53.09 Aligned_cols=126 Identities=13% Similarity=0.038 Sum_probs=95.9
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028844 3 LVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSK-GPVLTFSLLCKFFMLGVLGICLVQIFAI 80 (203)
Q Consensus 3 ~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~-~~~~~~~~~~~~~~lgl~g~~l~~~~~~ 80 (203)
..++.||.++..-|.. ++|+.+=...-...-...-+. .+... ...+ ....+.+.+..+...|.+. +..-.+|.
T Consensus 155 ~la~sf~~Ygl~RK~~---~v~a~~g~~lE~l~l~p~al~yl~~l~-~~~~~~~~~~~~~~~LLv~aG~vT-avpL~lf~ 229 (293)
T COG2962 155 ALALSFGLYGLLRKKL---KVDALTGLTLETLLLLPVALIYLLFLA-DSGQFLQQNANSLWLLLVLAGLVT-AVPLLLFA 229 (293)
T ss_pred HHHHHHHHHHHHHHhc---CCchHHhHHHHHHHHhHHHHHHHHHHh-cCchhhhcCCchHHHHHHHhhHHH-HHHHHHHH
Confidence 4567888888888874 377776666555544444443 22221 1111 1113456677788888886 89999999
Q ss_pred HHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 028844 81 TGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS 139 (203)
Q Consensus 81 ~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~ 139 (203)
.|-++++-+.-+++.+.+|....+++.++++|+++.. |....+..-.|..+..
T Consensus 230 ~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~------~~~~F~~IW~aL~l~~ 282 (293)
T COG2962 230 AAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSD------QLVTFAFIWLALALFS 282 (293)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 9999999999998765
No 49
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=97.60 E-value=1.3e-06 Score=72.04 Aligned_cols=139 Identities=17% Similarity=0.135 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhhhhhhhHHHHH
Q 028844 25 NFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITF 103 (203)
Q Consensus 25 p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~~gl~~t~a~~asil~~~~Pv~~~ 103 (203)
|..=.+..+..-+++.-| ..+| | +..+ ..|.+.+++|++- .-.+.+...+.|||+-+....+-.-.-..+.
T Consensus 48 Pt~QtFl~Y~LLalVY~~~~~fR---~-~~~~---~~~~hYilla~~D-VEaNy~vV~AyQyTsmtSi~lLDcwaip~v~ 119 (336)
T KOG2766|consen 48 PTSQTFLNYVLLALVYGPIMLFR---R-KYIK---AKWRHYILLAFVD-VEANYFVVKAYQYTSMTSIMLLDCWAIPCVL 119 (336)
T ss_pred ccHHHHHHHHHHHHHHhhHHHhh---h-HHHH---HHHHHhhheeEEe-ecccEEEeeehhhcchHHHHHHHHhhhHHHH
Confidence 677778888888888888 5554 3 2222 2345577777775 4455677789999999999999875555667
Q ss_pred HHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH
Q 028844 104 LLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSAT 183 (203)
Q Consensus 104 ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~ll~l~aa~~~a~ 183 (203)
+++|+++|.|-++. |+.|+++|++|+..+++.+-... +.+++.+..+||++.+++|-+||.
T Consensus 120 ~lsw~fLktrYrlm------ki~gV~iCi~GvvmvV~sDV~ag-------------d~aggsnp~~GD~lvi~GATlYaV 180 (336)
T KOG2766|consen 120 VLSWFFLKTRYRLM------KISGVVICIVGVVMVVFSDVHAG-------------DRAGGSNPVKGDFLVIAGATLYAV 180 (336)
T ss_pred HHHHHHHHHHHhhh------eeeeEEeEecceEEEEEeeeccc-------------cccCCCCCccCcEEEEecceeeee
Confidence 88999999999999 99999999999998875542210 112345667999999999999998
Q ss_pred HHHHHHH
Q 028844 184 WKIFQVQ 190 (203)
Q Consensus 184 y~il~~~ 190 (203)
-++...-
T Consensus 181 SNv~EEf 187 (336)
T KOG2766|consen 181 SNVSEEF 187 (336)
T ss_pred ccccHHH
Confidence 8876554
No 50
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.58 E-value=0.0024 Score=54.33 Aligned_cols=130 Identities=21% Similarity=0.198 Sum_probs=98.2
Q ss_pred hhHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHH-HHH--HhhhcCCC---CCCCHHHHHHHHHHHHHHHHHH
Q 028844 3 LVEIGEVGMITLGKAAMS-SGMSNFVYVVYYNALGTFILLH-YFI--YNTYRSKG---PVLTFSLLCKFFMLGVLGICLV 75 (203)
Q Consensus 3 ~~~~~wg~~~i~~k~~~~-~~~~p~~~~~~R~~ia~i~l~~-~~~--~~~~~~~~---~~~~~~~~~~~~~lgl~g~~l~ 75 (203)
++.++-|...+.-+..++ .+.++.+..++-...+.+..++ ... .+ +-.+. ...+...+..++...+.+ +..
T Consensus 161 ~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~-~~~~~~~f~~~~p~~~~~l~~~s~~~-~~g 238 (303)
T PF08449_consen 161 LSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTG-EFRSAIRFISAHPSVLLYLLLFSLTG-ALG 238 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhh-HhhHHHHHHHHhHHHHHHHHHHHHHH-HHH
Confidence 455666777777766664 4689999999999999888887 544 20 11111 111233445556666665 666
Q ss_pred HHHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHh
Q 028844 76 QIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSL 140 (203)
Q Consensus 76 ~~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~ 140 (203)
+.+.+.-.+..++...+++..+--+++.+++.++++++++.. +|.|+++.+.|..+-..
T Consensus 239 ~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~------~~~G~~lv~~g~~~~~~ 297 (303)
T PF08449_consen 239 QFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPL------QWIGIVLVFAGIFLYSY 297 (303)
T ss_pred HHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChH------HHHHHHHhHHHHHHHHH
Confidence 677777789999999999999999999999999999999999 99999999999987553
No 51
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=97.54 E-value=0.00062 Score=49.76 Aligned_cols=110 Identities=16% Similarity=0.061 Sum_probs=78.2
Q ss_pred CchhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028844 1 MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI 80 (203)
Q Consensus 1 ~l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~ 80 (203)
++++.++||.+.++.|.+... .++..-.. |..-....+ ++ +++. ...+.-.-.....|+
T Consensus 1 ~l~Vg~~WG~Tnpfik~g~~~-~~~~~~~~-~~~~~~~~L----l~----------n~~y-----~ipf~lNq~GSv~f~ 59 (113)
T PF10639_consen 1 LLLVGILWGCTNPFIKRGSSG-LEKVKASL-QLLQEIKFL----LL----------NPKY-----IIPFLLNQSGSVLFF 59 (113)
T ss_pred CeeehHHhcCchHHHHHHHhh-cCCccchH-HHHHHHHHH----HH----------hHHH-----HHHHHHHHHHHHHHH
Confidence 578899999999999998654 44443331 322111111 11 2222 123333456678889
Q ss_pred HHhhccChhhHhhhh-hhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHH
Q 028844 81 TGIKYSSPTLASAMG-NLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFI 137 (203)
Q Consensus 81 ~gl~~t~a~~asil~-~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~ 137 (203)
..+..++-+.+.-+. ++.=++|++.++++.+|..+++ .++|+.+...|+.+
T Consensus 60 ~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 60 LLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRR------TWLGMALILAGVAL 111 (113)
T ss_pred HHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeee
Confidence 999999999999986 5788999999988888888888 99999999999864
No 52
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.52 E-value=0.0008 Score=49.03 Aligned_cols=68 Identities=18% Similarity=0.264 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHhhccChhhHhhh-hhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHh
Q 028844 67 LGVLGICLVQIFAITGIKYSSPTLASAM-GNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSL 140 (203)
Q Consensus 67 lgl~g~~l~~~~~~~gl~~t~a~~asil-~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~ 140 (203)
..+.+..+.+.++..++++.|.+.|=.+ ..+--+.+++.++++++|+++.. |++|+.+.++|++.+..
T Consensus 35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 3456667888899999999999887666 45778888999999999999999 99999999999998753
No 53
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.52 E-value=0.00066 Score=50.20 Aligned_cols=68 Identities=24% Similarity=0.244 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHhhccChhhHhhh-hhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHh
Q 028844 67 LGVLGICLVQIFAITGIKYSSPTLASAM-GNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSL 140 (203)
Q Consensus 67 lgl~g~~l~~~~~~~gl~~t~a~~asil-~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~ 140 (203)
..+.+....+.++..++++.|.+.|=.+ ..+--+.+.+.++++++|+++.. |++|+.+.++|++.+..
T Consensus 35 ~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 35 LMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIKS 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhhc
Confidence 3455567889999999999999888666 45788899999999999999999 99999999999988753
No 54
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.48 E-value=0.00098 Score=48.04 Aligned_cols=66 Identities=21% Similarity=0.200 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHhhccChhhHhhh-hhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 028844 68 GVLGICLVQIFAITGIKYSSPTLASAM-GNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS 139 (203)
Q Consensus 68 gl~g~~l~~~~~~~gl~~t~a~~asil-~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~ 139 (203)
.+.+....+.+...++|+.|.+.|=.+ ...--+.+.+.++++++||++.. |++|+.+.++|++.+-
T Consensus 36 ~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~Lk 102 (106)
T COG2076 36 TIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLI------KLLGLALILAGVIGLK 102 (106)
T ss_pred HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHhh
Confidence 345557888999999999999887544 56888899999999999999999 9999999999998764
No 55
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.43 E-value=0.0063 Score=44.24 Aligned_cols=64 Identities=14% Similarity=0.155 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHhhccChhhHhhh-hhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 028844 69 VLGICLVQIFAITGIKYSSPTLASAM-GNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIV 138 (203)
Q Consensus 69 l~g~~l~~~~~~~gl~~t~a~~asil-~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l 138 (203)
+.+....+.+...++|+.|.+.|=.+ ...--+.+.+.++++++|+++.. |++|+.+.+.|++.+
T Consensus 42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~l 106 (109)
T PRK10650 42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHh
Confidence 44456788899999999999887555 55778889999999999999999 999999999999875
No 56
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.31 E-value=0.0018 Score=46.74 Aligned_cols=65 Identities=12% Similarity=0.066 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHhhccChhhHhhh-hhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 028844 69 VLGICLVQIFAITGIKYSSPTLASAM-GNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS 139 (203)
Q Consensus 69 l~g~~l~~~~~~~gl~~t~a~~asil-~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~ 139 (203)
+.+....+.+...++|+.|.+.|=.+ ...--+.+.+.++++++|++++. |++|+.+.++|++.+.
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPA------RLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhhh
Confidence 45557888999999999999887555 45788899999999999999999 9999999999998764
No 57
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.26 E-value=0.0013 Score=46.29 Aligned_cols=57 Identities=26% Similarity=0.222 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHhhccChhhHh-hhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHH
Q 028844 68 GVLGICLVQIFAITGIKYSSPTLAS-AMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVV 130 (203)
Q Consensus 68 gl~g~~l~~~~~~~gl~~t~a~~as-il~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l 130 (203)
.+.+....+.++..++++.|.+.+= +...+..+.+.+.++++++|+++.. |++|+.+
T Consensus 35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~------~~~gi~l 92 (93)
T PF00893_consen 35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLS------KWLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHhheee
Confidence 3445577889999999999999984 5566899999999999999999999 9999876
No 58
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.23 E-value=0.0042 Score=52.14 Aligned_cols=124 Identities=19% Similarity=0.218 Sum_probs=80.8
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 028844 2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAIT 81 (203)
Q Consensus 2 l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~~ 81 (203)
+++.+.|..+.++.|.. +.||.+..+-.. ++..+-...+.. ..++ +..+++.+ +-.+.|++- ...+.+++.
T Consensus 144 l~stigy~~Y~~~~~~~---~~~~~~~~lPqa-iGm~i~a~i~~~--~~~~-~~~~k~~~-~nil~G~~w-~ignl~~~i 214 (269)
T PF06800_consen 144 LISTIGYWIYSVIPKAF---HVSGWSAFLPQA-IGMLIGAFIFNL--FSKK-PFFEKKSW-KNILTGLIW-GIGNLFYLI 214 (269)
T ss_pred HHHHHHHHHHHHHHHhc---CCChhHhHHHHH-HHHHHHHHHHhh--cccc-cccccchH-HhhHHHHHH-HHHHHHHHH
Confidence 46777888888888773 388887776443 332222221111 1111 11122232 335667765 677899999
Q ss_pred HhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHH
Q 028844 82 GIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAF 136 (203)
Q Consensus 82 gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~ 136 (203)
+.+..+.+.+-.+..+.+++..+.+.+++||+-++|+ -...++|+++.++|.+
T Consensus 215 s~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke--~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 215 SAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKE--MIYTLIGLILIVIGAI 267 (269)
T ss_pred hHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhh--HHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999977761 1223445555555553
No 59
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.02 E-value=0.023 Score=49.42 Aligned_cols=168 Identities=15% Similarity=0.071 Sum_probs=105.1
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHHHHHH--HHHHhhhcC---CCCCCCHHHHHHHHHHHHHHHHHH
Q 028844 2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVY-YNALGTFILLH--YFIYNTYRS---KGPVLTFSLLCKFFMLGVLGICLV 75 (203)
Q Consensus 2 l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~-R~~ia~i~l~~--~~~~~~~~~---~~~~~~~~~~~~~~~lgl~g~~l~ 75 (203)
+++.++||++++-.|.. +. -| ++.-.. -..++.++.-. ..+. .+. .....+.+.+..-++-|.+- ...
T Consensus 13 ~i~~~~~GS~~~p~K~~-k~-w~-wE~~W~v~gi~~wl~~~~~~g~~~--~~~f~~~~~~~~~~~~~~~~l~G~~W-~iG 86 (345)
T PRK13499 13 LIGGASSGSFYAPFKKV-KK-WS-WETMWSVGGIFSWLILPWLIAALL--LPDFWAYYSSFSGSTLLPVFLFGALW-GIG 86 (345)
T ss_pred HHHHHHhhccccccccc-CC-Cc-hhHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHhcCHHHHHHHHHHHHHH-Hhh
Confidence 57889999999999983 32 33 111111 00111111110 1111 110 01123555666666666664 688
Q ss_pred HHHHHHHhhccChhhHhhhh-hhhHHHHHHHHHHHhhhhh---hhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCC
Q 028844 76 QIFAITGIKYSSPTLASAMG-NLIPGITFLLAVFFRMEKV---AIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSS 151 (203)
Q Consensus 76 ~~~~~~gl~~t~a~~asil~-~~~Pv~~~ila~~~~~E~~---~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~ 151 (203)
+..++.++++.+.+.+--+. .++-+...++..++++|-- +.. .+..-.+|+++.++|+.+........ +
T Consensus 87 ~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~--~g~~~~~gv~liliGi~l~s~Ag~~k-----~ 159 (345)
T PRK13499 87 GITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATN--GGRMTLLGVLVALIGVAIVGRAGQLK-----E 159 (345)
T ss_pred hhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccc--hHHHHHHHHHHHHHHHHHHHHhhhhc-----c
Confidence 99999999999999998775 5889999999999998764 322 34447889999999998876521110 0
Q ss_pred CCCCCCCCC-CCCCchhhHHHHHHHHHHHHHHHHHH
Q 028844 152 PSNSNIQLP-VSEYSNWALGGLLLTVTCFSSATWKI 186 (203)
Q Consensus 152 ~~~~~~~~~-~~~~~~~~lG~ll~l~aa~~~a~y~i 186 (203)
.+.++ ..++.+...|.+.++.+.+.+++|..
T Consensus 160 ----~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~ 191 (345)
T PRK13499 160 ----RKMGIKKAEEFNLKKGLILAVMSGIFSACFSF 191 (345)
T ss_pred ----cccccccccccchHhHHHHHHHHHHHHHHHHH
Confidence 00000 01234567999999999999999994
No 60
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=96.90 E-value=0.00044 Score=57.67 Aligned_cols=123 Identities=17% Similarity=0.156 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028844 7 GEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKY 85 (203)
Q Consensus 7 ~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~~gl~~ 85 (203)
.-+..++..|.. ....+....+.+-..++.+.-+. +... .....+ ..++++..+..+|++| +++|++...|+|.
T Consensus 202 f~asvyIilR~i-Gk~~h~~msvsyf~~i~lV~s~I~~~~i--g~~~lP-~cgkdr~l~~~lGvfg-figQIllTm~lQi 276 (346)
T KOG4510|consen 202 FGASVYIILRYI-GKNAHAIMSVSYFSLITLVVSLIGCASI--GAVQLP-HCGKDRWLFVNLGVFG-FIGQILLTMGLQI 276 (346)
T ss_pred hhhhHHHHHHHh-hccccEEEEehHHHHHHHHHHHHHHhhc--cceecC-ccccceEEEEEehhhh-hHHHHHHHHHhhh
Confidence 334556666664 23366555555555555555544 2222 222222 3456667788899998 8999999999999
Q ss_pred cChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHh
Q 028844 86 SSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSL 140 (203)
Q Consensus 86 t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~ 140 (203)
--|+..+++.++.-++..+.-.++++|.+++. .|.|.++.+...+.+..
T Consensus 277 ErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~w------s~~Ga~~vvsS~v~~a~ 325 (346)
T KOG4510|consen 277 ERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIW------SWVGAVMVVSSTVWVAL 325 (346)
T ss_pred hccCCeehhhHHHHHHHHHHHHHHhcCCChHH------HhhceeeeehhHHHHHH
Confidence 99999999999999999999999999999999 99999888877776654
No 61
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=96.80 E-value=0.0065 Score=51.59 Aligned_cols=133 Identities=14% Similarity=0.121 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHhhhcCC--CCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHhhccChhhHhhhhhhhHH
Q 028844 25 NFVYVVYYNALGTFILLH-YFIYNTYRSK--GPVLTFSLLC-KFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPG 100 (203)
Q Consensus 25 p~~~~~~R~~ia~i~l~~-~~~~~~~~~~--~~~~~~~~~~-~~~~lgl~g~~l~~~~~~~gl~~t~a~~asil~~~~Pv 100 (203)
|+.++.....+=..+-.. ..... ++.. +...+|++.. ++.-.|+.+ ++...+-+++++|++.+.-+..=+..++
T Consensus 45 PLf~ts~h~~v~flfa~~~~~l~~-~~~~r~r~~~sw~~~Lr~~aPtalat-a~DIGLSN~sl~yVtlSlYTM~KSSsi~ 122 (349)
T KOG1443|consen 45 PLFVTSLHLAVKFLFAALSRRLYQ-CSVPRARVVLSWRDYLRRLAPTALAT-ALDIGLSNWSLEYVTLSLYTMTKSSSIL 122 (349)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHh-ccCCccccCCcHHHHHHHhhhhhhhh-hcccccccceeeeeeeeeeeeccccHHH
Confidence 677777666544333332 11110 1111 1235666544 445566664 8889999999999999999999899999
Q ss_pred HHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHH
Q 028844 101 ITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFS 180 (203)
Q Consensus 101 ~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~ll~l~aa~~ 180 (203)
|+.+++.++.-||.++. -..-+.+..+|+.+.+ .+.. +-+..|..++++|+++
T Consensus 123 FIllFs~if~lEk~~w~------L~l~v~lI~~Glflft-~KsT--------------------qf~i~Gf~lv~~aS~~ 175 (349)
T KOG1443|consen 123 FILLFSLIFKLEKFRWA------LVLIVLLIAVGLFLFT-YKST--------------------QFNIEGFFLVLAASLL 175 (349)
T ss_pred HHHHHHHHHHhHHHHHH------HHHHHHHHhhheeEEE-eccc--------------------ceeehhHHHHHHHHHh
Confidence 99999999999999998 5555666666665543 2222 1235788888888887
Q ss_pred HHHHHH
Q 028844 181 SATWKI 186 (203)
Q Consensus 181 ~a~y~i 186 (203)
-+.==.
T Consensus 176 sGlRW~ 181 (349)
T KOG1443|consen 176 SGLRWA 181 (349)
T ss_pred hhhhHH
Confidence 666433
No 62
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.73 E-value=0.096 Score=45.59 Aligned_cols=136 Identities=21% Similarity=0.103 Sum_probs=83.3
Q ss_pred hhHHHHHHHH-------HHHHHHHhCCCCHHHHHHHHHH---HHHHHHHH--HHHHhhhcCCC----CC-CCHHHHHHH-
Q 028844 3 LVEIGEVGMI-------TLGKAAMSSGMSNFVYVVYYNA---LGTFILLH--YFIYNTYRSKG----PV-LTFSLLCKF- 64 (203)
Q Consensus 3 ~~~~~wg~~~-------i~~k~~~~~~~~p~~~~~~R~~---ia~i~l~~--~~~~~~~~~~~----~~-~~~~~~~~~- 64 (203)
++.+.++.+. +.-+.+.+.+.+|.....-.+. +++.+.-+ +..++.++++. .+ .+++.+.+-
T Consensus 181 isgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~ 260 (345)
T PRK13499 181 MSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSLAKPLLITNV 260 (345)
T ss_pred HHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhccccchhHHHHH
Confidence 4455566555 5555554456888777666665 55444432 22221011111 11 121222222
Q ss_pred ---HHHHHHHHHHHHHHHHHHhhccChhhHhh---hh-hhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHH
Q 028844 65 ---FMLGVLGICLVQIFAITGIKYSSPTLASA---MG-NLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFI 137 (203)
Q Consensus 65 ---~~lgl~g~~l~~~~~~~gl~~t~a~~asi---l~-~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~ 137 (203)
.+.|++- ...+.+|..|-+..+.+.+.+ +. .+.-++..+-+. ++||+-+..|++.+..++|+++.++|+.+
T Consensus 261 l~~~l~G~~W-~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~l 338 (345)
T PRK13499 261 LLSALAGVMW-YLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANI 338 (345)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHH
Confidence 4444443 667788888888887666655 55 566677777777 59999887677788889999999999988
Q ss_pred HHh
Q 028844 138 VSL 140 (203)
Q Consensus 138 l~~ 140 (203)
+..
T Consensus 339 ig~ 341 (345)
T PRK13499 339 VGL 341 (345)
T ss_pred Hhh
Confidence 764
No 63
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=96.69 E-value=0.0041 Score=53.08 Aligned_cols=72 Identities=25% Similarity=0.510 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhc
Q 028844 64 FFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLY 141 (203)
Q Consensus 64 ~~~lgl~g~~l~~~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~ 141 (203)
....|+....++..+.+.++.+.|++.-+-+..+.-++.++++..++|||++++ .+.|..+++.|..+++..
T Consensus 52 ~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~------~~~G~~l~i~G~~liv~~ 123 (300)
T PF05653_consen 52 LWWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRR------DIVGCALIILGSVLIVIF 123 (300)
T ss_pred HHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHh------HHhhHHHHHhhheeeEEe
Confidence 345565555677788889999999999999999999999999999999999999 999999999999877643
No 64
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=96.62 E-value=0.005 Score=52.89 Aligned_cols=128 Identities=16% Similarity=0.179 Sum_probs=94.6
Q ss_pred hhHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHH-H-HHHHhhhcCCC-----CCCCHHHHHHHHHHHHHHH
Q 028844 3 LVEIGEVGMITLGKAAMS---SGMSNFVYVVYYNALGTFILL-H-YFIYNTYRSKG-----PVLTFSLLCKFFMLGVLGI 72 (203)
Q Consensus 3 ~~~~~wg~~~i~~k~~~~---~~~~p~~~~~~R~~ia~i~l~-~-~~~~~~~~~~~-----~~~~~~~~~~~~~lgl~g~ 72 (203)
.+.+..+.-.++.|..+. +.+|++.+..+---++.+.++ | .... +.... ...+... ....+.+++.
T Consensus 170 ~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~sv~~- 245 (316)
T KOG1441|consen 170 ISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYV--EGNKFVGFLTAPWFVTF-LILLLNSVLA- 245 (316)
T ss_pred HHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhh--cccceeeeeccccchhh-HHHHHHHHHH-
Confidence 345566677788888773 359999999999999999999 7 4443 22211 1223332 3334444544
Q ss_pred HHHHHHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHh
Q 028844 73 CLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSL 140 (203)
Q Consensus 73 ~l~~~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~ 140 (203)
.+.+...+.-+..++|-+=++....==+++...++++++|+++.. +..|..+++.|+.+-..
T Consensus 246 f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~------n~~G~~iai~Gv~~Y~~ 307 (316)
T KOG1441|consen 246 FLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFL------NALGYAIAILGVFLYSR 307 (316)
T ss_pred HHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchh------hHHHHHHHHHHHHHHHH
Confidence 777888999999999988888877666667778899999999999 99999999999987653
No 65
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=96.49 E-value=0.023 Score=42.97 Aligned_cols=103 Identities=22% Similarity=0.250 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhhhhhh-hHHH
Q 028844 24 SNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNL-IPGI 101 (203)
Q Consensus 24 ~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~~gl~~t~a~~asil~~~-~Pv~ 101 (203)
||..-++.-+..+.+.+.. .... +++...+.. +.-++...-|++| .....+.....+..+++++..+.-. +-+.
T Consensus 29 s~~~as~i~~~~G~i~~~i~~~~~--~~~~~~~~~-~~p~w~~lGG~lG-~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~ 104 (138)
T PF04657_consen 29 SPLVASFISFGVGFILLLIILLIT--GRPSLASLS-SVPWWAYLGGLLG-VFFVLSNIILVPRLGAALTTILIVAGQLIA 104 (138)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHh--cccccchhc-cCChHHhccHHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 5999999999999999988 5554 332221111 1112344467777 7777888889999999998877654 5555
Q ss_pred HHHHHHH----HhhhhhhhccccchhHHHHHHHHHHHHH
Q 028844 102 TFLLAVF----FRMEKVAIRSRSSQAKILGTVVSIAGAF 136 (203)
Q Consensus 102 ~~ila~~----~~~E~~~~~~~~~~~~~~G~~l~~~Gv~ 136 (203)
..++-++ .-|+|++.+ |++|+.+.++|+.
T Consensus 105 sl~iD~fG~fg~~~~~~~~~------r~lG~~l~i~Gv~ 137 (138)
T PF04657_consen 105 SLLIDHFGLFGAPKRPFSLR------RILGLALMIAGVI 137 (138)
T ss_pred HHHHHHccccCCCCCCCCHH------HHHHHHHHHHHHh
Confidence 5555554 245677777 9999999999985
No 66
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=95.91 E-value=0.023 Score=46.78 Aligned_cols=74 Identities=20% Similarity=0.258 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 028844 59 SLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIV 138 (203)
Q Consensus 59 ~~~~~~~~lgl~g~~l~~~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l 138 (203)
..+..+.++|+.+ .++|.+.+.-+.+-+|-..|++..+--+|+.+.+++++..+++.+ ||+|.++.+.|...=
T Consensus 239 ~~~~~l~l~ai~s-~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~r------QwlgtvlVF~aL~~D 311 (337)
T KOG1580|consen 239 YVFWDLTLLAIAS-CLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGR------QWLGTVLVFSALTAD 311 (337)
T ss_pred HHHHHHHHHHHHH-HhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHHhhhH
Confidence 4556677777776 888999999999999999999999999999999999999999999 999999999998764
Q ss_pred H
Q 028844 139 S 139 (203)
Q Consensus 139 ~ 139 (203)
.
T Consensus 312 ~ 312 (337)
T KOG1580|consen 312 V 312 (337)
T ss_pred h
Confidence 3
No 67
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=95.67 E-value=0.089 Score=46.01 Aligned_cols=134 Identities=11% Similarity=0.164 Sum_probs=94.0
Q ss_pred chhHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHH-HHHHhhhc-CCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028844 2 ALVEIGEVGMITLGKAAMSS---GMSNFVYVVYYNALGTFILLH-YFIYNTYR-SKGPVLTFSLLCKFFMLGVLGICLVQ 76 (203)
Q Consensus 2 l~~~~~wg~~~i~~k~~~~~---~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~-~~~~~~~~~~~~~~~~lgl~g~~l~~ 76 (203)
+++++.||.+.++.|.-.++ .+|--.+-.+=-++..++++| .+..+.-+ ++.+-.+..+...+++.+++|+.+.-
T Consensus 253 L~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ligtvvSD 332 (416)
T KOG2765|consen 253 LLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNLIGTVVSD 332 (416)
T ss_pred HHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhHHHHHHHH
Confidence 46889999999999886554 255445555555667778887 54432111 11111233344556788899999999
Q ss_pred HHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhc
Q 028844 77 IFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLY 141 (203)
Q Consensus 77 ~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~ 141 (203)
++|..|.-.|++-.+++=++++--..++.-.++.+.+++.. .++|.+..++|-+++...
T Consensus 333 ylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~------~iiGsi~Ifv~Fv~vn~~ 391 (416)
T KOG2765|consen 333 YLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSAL------YIIGSIPIFVGFVIVNIS 391 (416)
T ss_pred HHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHhheecc
Confidence 99999999999999998877543344555555656677777 999999999999887644
No 68
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.99 E-value=0.013 Score=50.00 Aligned_cols=72 Identities=25% Similarity=0.453 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhc
Q 028844 64 FFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLY 141 (203)
Q Consensus 64 ~~~lgl~g~~l~~~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~ 141 (203)
....|++...++...-|.+..+.|++.-+-+-++.-++.++++..+++||++.+ ..+|.+++++|-.+++..
T Consensus 66 ~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~------g~lGc~l~v~Gst~iV~h 137 (335)
T KOG2922|consen 66 LWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLL------GILGCVLCVVGSTTIVIH 137 (335)
T ss_pred HHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHh------hhhheeEEecccEEEEEe
Confidence 345566655666777777888899999999999999999999999999999999 999999999999887643
No 69
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=94.78 E-value=0.12 Score=41.80 Aligned_cols=58 Identities=17% Similarity=0.119 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHH
Q 028844 73 CLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAF 136 (203)
Q Consensus 73 ~l~~~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~ 136 (203)
...+.+..+-+++.++..-+....+.++++.+++.++++|+++.. ++.|..+.+.|+.
T Consensus 163 a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~------~~~g~~lV~~~~~ 220 (222)
T TIGR00803 163 VGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISST------FYLGAILVFLATF 220 (222)
T ss_pred HhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH------HHHHHHHHHeeeE
Confidence 556677888899999999999999999999999999999999999 9999999998864
No 70
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=93.62 E-value=0.48 Score=39.22 Aligned_cols=102 Identities=15% Similarity=0.108 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCC
Q 028844 72 ICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSS 151 (203)
Q Consensus 72 ~~l~~~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~ 151 (203)
.-+....-+.++|+.|=.++.+=-+.-|+=++++++.+.|++-+++ |..-+++..+|+.+...-++.. .
T Consensus 95 YLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~------kY~cVL~IV~GValFmYK~~Kv-~---- 163 (337)
T KOG1580|consen 95 YLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWR------KYCCVLMIVVGVALFMYKENKV-G---- 163 (337)
T ss_pred HHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHH------HHHHHHHHHHHHHHhhcccccc-C----
Confidence 4567778889999999887777778889999999999999999999 9999999999998765322221 1
Q ss_pred CCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028844 152 PSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQVQSYF 193 (203)
Q Consensus 152 ~~~~~~~~~~~~~~~~~lG~ll~l~aa~~~a~y~il~~~~~~ 193 (203)
+.+......|.++++++--.=+.-...|.|.+.
T Consensus 164 ---------g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira 196 (337)
T KOG1580|consen 164 ---------GAEDKTFGFGELLLILSLAMDGLTGSIQDRIRA 196 (337)
T ss_pred ---------CCcccccchHHHHHHHHHHhcccchhHHHHHHH
Confidence 134455678999998887666666666666543
No 71
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=93.27 E-value=0.0035 Score=51.69 Aligned_cols=159 Identities=16% Similarity=0.173 Sum_probs=93.4
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028844 3 LVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITG 82 (203)
Q Consensus 3 ~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~~g 82 (203)
+-++.||+...+...- +-+|.+=+.---.-|.++-+..++. ..+..+.+.+.--++-|++- ...|..++.+
T Consensus 9 ~P~l~WGsip~v~~k~---GG~p~qQ~lGtT~GALifaiiv~~~-----~~p~~T~~~~iv~~isG~~W-s~GQ~~Qfka 79 (288)
T COG4975 9 LPALGWGSIPLVANKF---GGKPYQQTLGTTLGALIFAIIVFLF-----VSPELTLTIFIVGFISGAFW-SFGQANQFKA 79 (288)
T ss_pred HHHHHhcccceeeeec---CCChhHhhhhccHHHHHHHHHHhee-----ecCccchhhHHHHHHhhhHh-hhhhhhhhhh
Confidence 4577898877765331 2344443322222222222222221 12334555555555556554 6789999999
Q ss_pred hhccChhhHhhhhh-hhHHHHHHHHHHHhhhhhhhccccchhHHH---HHHHHHHHHHHHHhccCCCCCCCCCCCCCCCC
Q 028844 83 IKYSSPTLASAMGN-LIPGITFLLAVFFRMEKVAIRSRSSQAKIL---GTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQ 158 (203)
Q Consensus 83 l~~t~a~~asil~~-~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~---G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~ 158 (203)
+++.++++|.-+.+ ++-+-+.+++++.++|.-+..+ .++ ++++.++|+.+-+..+.. | +
T Consensus 80 ~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~-----~IlG~iAliliviG~~lTs~~~~~---------n--k- 142 (288)
T COG4975 80 IQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQ-----IILGFIALILIVIGIYLTSKQDRN---------N--K- 142 (288)
T ss_pred eeeeeeeccccccchhhHhhceeeeEEEEeccCcchh-----HHHHHHHHHHHHHhheEeeeeccc---------c--c-
Confidence 99999999998865 7888899999999999887661 233 344555555543322110 0 0
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 028844 159 LPVSEYSNWALGGLLLTVTCFSSATWKIFQ 188 (203)
Q Consensus 159 ~~~~~~~~~~lG~ll~l~aa~~~a~y~il~ 188 (203)
+.++.++.-.|...++.+.+.|-.|.++.
T Consensus 143 -~~~~~~n~kkgi~~L~iSt~GYv~yvvl~ 171 (288)
T COG4975 143 -EEENPSNLKKGIVILLISTLGYVGYVVLF 171 (288)
T ss_pred -cccChHhhhhheeeeeeeccceeeeEeee
Confidence 01223345577777777777777776653
No 72
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=92.13 E-value=0.2 Score=42.67 Aligned_cols=109 Identities=12% Similarity=0.133 Sum_probs=84.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhhhhh
Q 028844 22 GMSNFVYVVYYNALGTFILLHYFIYNTYRSKG-----PVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGN 96 (203)
Q Consensus 22 ~~~p~~~~~~R~~ia~i~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~lgl~g~~l~~~~~~~gl~~t~a~~asil~~ 96 (203)
.+++.++.+.-.+..++.-...... ..... .+.+++.+..++++..+| +..|.+.++-++.-++-.-+.++.
T Consensus 199 k~s~~~mM~~vNLf~~i~~~~~li~--qg~~~~av~F~~~hp~~~~Di~l~s~~g-avGQ~FI~~TI~~FGslt~t~I~t 275 (327)
T KOG1581|consen 199 KVSSLHMMFGVNLFSAILNGTYLIL--QGHLLPAVSFIKEHPDVAFDILLYSTCG-AVGQLFIFYTIERFGSLTFTTIMT 275 (327)
T ss_pred CccHhHHHHHHHHHHHHHHHHhhhc--CCCCchHHHHHHcChhHHHHHHHHHHhh-hhhhheehhhHhhcccHHHHHHHH
Confidence 4788888887777766655542221 11111 234667778888899988 888899999999888888788888
Q ss_pred hhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 028844 97 LIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS 139 (203)
Q Consensus 97 ~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~ 139 (203)
+==++..+++.+.++.+++.. ||.|+.+.+.|+.+=.
T Consensus 276 tRk~~si~lS~i~f~h~~s~~------q~~g~~iVFg~i~l~~ 312 (327)
T KOG1581|consen 276 TRKMVSIMLSCIVFGHPLSSE------QWLGVLIVFGGIFLEI 312 (327)
T ss_pred HHHHHHHHHHHHHhCCccchh------hccCeeeehHHHHHHH
Confidence 888899999999999999999 9999999999997644
No 73
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.00 E-value=1.8 Score=33.27 Aligned_cols=109 Identities=18% Similarity=0.163 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhhh-hhhhHHH
Q 028844 24 SNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAM-GNLIPGI 101 (203)
Q Consensus 24 ~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~~gl~~t~a~~asil-~~~~Pv~ 101 (203)
+|+.-.+..+..+.+++.. .+.. +++.......+.-++...-|++| ..+-..-.......+++....+ ..-+-+.
T Consensus 33 spl~As~isf~vGt~~L~~l~l~~--~~~~~~a~~~~~pwW~~~GG~lG-a~~vt~s~~l~p~lGa~~t~~l~i~gQli~ 109 (150)
T COG3238 33 SPLLASLISFLVGTVLLLILLLIK--QGHPGLAAVASAPWWAWIGGLLG-AIFVTSSILLAPRLGAATTIALVIAGQLIM 109 (150)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHh--cCCCchhhccCCchHHHHccchh-hhhhhhhHHhccchhHHHHHHHHHHHHHHH
Confidence 6999999999999998887 5554 33332221122223334445555 4444444555666666555444 3344444
Q ss_pred HHHHHHH-HhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 028844 102 TFLLAVF-FRMEKVAIRSRSSQAKILGTVVSIAGAFIV 138 (203)
Q Consensus 102 ~~ila~~-~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l 138 (203)
..++-.+ +++++ +|..+..+++|+.+.++|++++
T Consensus 110 glliD~fG~~g~~---~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 110 GLLIDHFGWFGVP---KRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred HHHHHhhcccCCC---cCCCCHHHHHHHHHHHHHHHHh
Confidence 4444333 22221 2233444999999999996554
No 74
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=91.26 E-value=8.2 Score=33.13 Aligned_cols=145 Identities=17% Similarity=0.156 Sum_probs=92.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhhhhh--hhHHH
Q 028844 24 SNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGN--LIPGI 101 (203)
Q Consensus 24 ~p~~~~~~R~~ia~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~~gl~~t~a~~asil~~--~~Pv~ 101 (203)
+|..+.+.+-..+.++-.. +.. .++.. ....+.|......++.. .+...+.+.+++|.+=-.-.+-=+ +.|+.
T Consensus 50 ~~~fL~~~q~l~~~~~s~~-~l~--~~k~~-~~~~apl~~y~~is~tn-~~s~~~~yeaLKyvSyPtq~LaKscKmIPVm 124 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLVSYA-MLK--WWKKE-LSGVAPLYKYSLISFTN-TLSSWCGYEALKYVSYPTQTLAKSCKMIPVM 124 (327)
T ss_pred ccHHHHHHHHHHHHHHHHH-HHh--ccccc-CCCCCchhHHhHHHHHh-hcchHHHHHHHHhccchHHHHHHHhhhhHHH
Confidence 4566666666666555443 332 22222 22233445666777765 788899999999987544444433 56655
Q ss_pred HHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHH
Q 028844 102 TFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSS 181 (203)
Q Consensus 102 ~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~ll~l~aa~~~ 181 (203)
++..+..+.|.+.. +-+-..+.-.|+.+....+..+ +. ......+...|.+++...-+.=
T Consensus 125 --lmg~Lvy~~ky~~~------eYl~~~LIs~GvsiF~l~~~s~-s~-----------~~~g~~ns~~G~~Ll~~~L~fD 184 (327)
T KOG1581|consen 125 --LMGTLVYGRKYSSF------EYLVAFLISLGVSIFSLFPNSD-SS-----------SKSGRENSPIGILLLFGYLLFD 184 (327)
T ss_pred --HHHHHHhcCccCcH------HHHHHHHHHhheeeEEEecCCC-Cc-----------cccCCCCchHhHHHHHHHHHHH
Confidence 67788888888888 8888888888887655443322 00 0112235678999888888877
Q ss_pred HHHHHHHHHHHH
Q 028844 182 ATWKIFQVQSYF 193 (203)
Q Consensus 182 a~y~il~~~~~~ 193 (203)
+.-+..|.++.+
T Consensus 185 gfTn~tQd~lf~ 196 (327)
T KOG1581|consen 185 GFTNATQDSLFK 196 (327)
T ss_pred hhHHhHHHHHhc
Confidence 777777777665
No 75
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=91.10 E-value=0.83 Score=38.63 Aligned_cols=128 Identities=16% Similarity=0.191 Sum_probs=85.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHH
Q 028844 54 PVLTFSLLCKFFMLGVLGICLVQIFAITGIKY-SSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSI 132 (203)
Q Consensus 54 ~~~~~~~~~~~~~lgl~g~~l~~~~~~~gl~~-t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~ 132 (203)
++.+.|++..... .+ +..+.+-++++++ ++...=-++=+-.++.++++++++.+.|-+.+ |+..+++.-
T Consensus 60 ~kiplk~Y~i~V~--mF--F~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~------Qy~Sv~~iT 129 (330)
T KOG1583|consen 60 PKIPLKDYAITVA--MF--FIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLR------QYSSVLMIT 129 (330)
T ss_pred CCCchhhhheehh--ee--eeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehh------hhhhHHhhh
Confidence 5566666554332 22 3445666678877 45555555556788999999999999998888 999999999
Q ss_pred HHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028844 133 AGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQVQSYF 193 (203)
Q Consensus 133 ~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~ll~l~aa~~~a~y~il~~~~~~ 193 (203)
+|+++-...+.++... .+++--+.++......|.+|..++..|-+.-|...+.|.+..+
T Consensus 130 iGiiIcTl~s~~d~~~--~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~ 188 (330)
T KOG1583|consen 130 IGIIICTLFSSKDGRS--KLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQ 188 (330)
T ss_pred hhheeEEeecCcchhh--hhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998876655443221 0111001111122235789999999999998888888877654
No 76
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=90.03 E-value=0.25 Score=41.06 Aligned_cols=81 Identities=14% Similarity=0.195 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHH
Q 028844 55 VLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAG 134 (203)
Q Consensus 55 ~~~~~~~~~~~~lgl~g~~l~~~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~G 134 (203)
+.++..+.. .+-|++- ...+.+++.+-+..+.+++=-+..+..+...+-+.+++|||-++|++ ...++|+++.++|
T Consensus 204 ~~~K~t~~n-ii~G~~W-a~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm--~~v~iGiilivvg 279 (288)
T COG4975 204 RFNKYTWLN-IIPGLIW-AIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEM--VYVIIGIILIVVG 279 (288)
T ss_pred chHHHHHHH-HhhHHHH-HhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhh--hhhhhhHHHHHHH
Confidence 344445444 4567765 67789999999988888887888888889999999999999998822 2235677777777
Q ss_pred HHHHH
Q 028844 135 AFIVS 139 (203)
Q Consensus 135 v~~l~ 139 (203)
+.++.
T Consensus 280 ai~lg 284 (288)
T COG4975 280 AILLG 284 (288)
T ss_pred hhhhh
Confidence 76653
No 77
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=89.98 E-value=1.4 Score=37.23 Aligned_cols=110 Identities=15% Similarity=0.189 Sum_probs=81.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHH-HHHHhhhcC--CC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhhhh
Q 028844 22 GMSNFVYVVYYNALGTFILLH-YFIYNTYRS--KG---PVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMG 95 (203)
Q Consensus 22 ~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~--~~---~~~~~~~~~~~~~lgl~g~~l~~~~~~~gl~~t~a~~asil~ 95 (203)
+.+..+++++.+.++.+.++. .... ..- .+ .+.++|.....++.++.| ++.+.+...=++.-+|..|+.++
T Consensus 217 ~~ss~EmvfySy~iG~vflf~~mvlT--ge~f~a~~fcaehp~~tyGy~~~~s~~g-ylG~~~VLalI~~fGA~~aatvT 293 (367)
T KOG1582|consen 217 PASSSEMVFYSYGIGFVFLFAPMVLT--GELFSAWTFCAEHPVRTYGYAFLFSLAG-YLGIVFVLALIKLFGALIAATVT 293 (367)
T ss_pred CCCcceEEEeeecccHHHHHHHHHhc--ccchhhhHHHHhCcHhHHHHHHHHHHHh-HhhHHHHHHHHHHhchhHHHHHH
Confidence 355677888888888888876 5443 110 01 123566666777767666 66666666667777899999999
Q ss_pred hhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHh
Q 028844 96 NLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSL 140 (203)
Q Consensus 96 ~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~ 140 (203)
..---.|.++++++|.++++.+ ...|..+.+.|+.+=..
T Consensus 294 TaRKavTi~lSfllFsKPfT~q------y~~~gllv~lgI~Ln~y 332 (367)
T KOG1582|consen 294 TARKAVTILLSFLLFSKPFTEQ------YVWSGLLVVLGIYLNMY 332 (367)
T ss_pred HhHhHHHHHHHHHHHcCchHHH------HhhhhHHHHHHHHhhcc
Confidence 8888899999999999999999 89999999999987443
No 78
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.72 E-value=0.56 Score=39.63 Aligned_cols=89 Identities=15% Similarity=0.050 Sum_probs=63.7
Q ss_pred HHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCC
Q 028844 79 AITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQ 158 (203)
Q Consensus 79 ~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~ 158 (203)
-+.-++|.+++---+==.++-+|+.+++++++|+|-+.. -..+..+.+.|-.+=+ +..
T Consensus 119 nnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~------~~~~C~lIi~GF~lGv--dqE-------------- 176 (347)
T KOG1442|consen 119 NNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFF------ALGCCLLIILGFGLGV--DQE-------------- 176 (347)
T ss_pred cceehhhcceEEEEeccchhhhHHHHhHHhhcccccccc------cceeehhheehheecc--ccc--------------
Confidence 345677777665544456788899999999999999988 6666666666654311 111
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028844 159 LPVSEYSNWALGGLLLTVTCFSSATWKIFQVQS 191 (203)
Q Consensus 159 ~~~~~~~~~~lG~ll~l~aa~~~a~y~il~~~~ 191 (203)
+..+.-...|.++.+.|.++-|...+..||.
T Consensus 177 --~~~~~ls~~GvifGVlaSl~vAlnaiytkk~ 207 (347)
T KOG1442|consen 177 --GSTGTLSWIGVIFGVLASLAVALNAIYTKKV 207 (347)
T ss_pred --cccCccchhhhHHHHHHHHHHHHHHHhhhee
Confidence 1123334589999999999999999998864
No 79
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=87.36 E-value=2 Score=35.38 Aligned_cols=99 Identities=14% Similarity=0.162 Sum_probs=74.1
Q ss_pred HHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCC
Q 028844 77 IFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSN 156 (203)
Q Consensus 77 ~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~ 156 (203)
..--.+++|.+...-+++-+++-+.++..-..+|+.|++.. .....++.+..-+.-...+...
T Consensus 83 yt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl------~l~SFilMvlSS~va~w~D~q~----------- 145 (309)
T COG5070 83 YTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSL------ELLSFILMVLSSVVATWGDQQA----------- 145 (309)
T ss_pred HhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchh------hHHHHHHHHHHHHHhccchhhH-----------
Confidence 33446899999999999999999999999999999999998 8888877777665543222110
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028844 157 IQLPVSEYSNWALGGLLLTVTCFSSATWKIFQVQSYFLA 195 (203)
Q Consensus 157 ~~~~~~~~~~~~lG~ll~l~aa~~~a~y~il~~~~~~~~ 195 (203)
........+-|.+++...+++-+.|....|+-.+++
T Consensus 146 ---~~~~~~~lN~GY~Wm~~NclssaafVL~mrkri~lt 181 (309)
T COG5070 146 ---SAFKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLT 181 (309)
T ss_pred ---HHHHhcccCCceEEEehhhHhHHHHHHHHHHhhccc
Confidence 000112345699999999999999999988876653
No 80
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=87.21 E-value=0.92 Score=32.75 Aligned_cols=115 Identities=15% Similarity=0.103 Sum_probs=69.8
Q ss_pred CchhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028844 1 MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI 80 (203)
Q Consensus 1 ~l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~ 80 (203)
++.+.+.||.+.++.|.+.. +.+...-.. |-.- ...+ +-+. .-.+++.+..+. +-.. ...+|+
T Consensus 8 lvaVgllWG~Tnplirrgs~-g~~~v~~~~-~k~~-------~~lq--e~~t-l~l~w~Y~iPFl-lNqc----gSaly~ 70 (125)
T KOG4831|consen 8 LVAVGLLWGATNPLIRRGSL-GWDKVKSSS-RKIM-------IALQ--EMKT-LFLNWEYLIPFL-LNQC----GSALYY 70 (125)
T ss_pred HHHHHHHHccccHHHHHHHh-hHhhccCch-HHHH-------HHHH--HHHH-HHHhHHHHHHHH-HHHh----hHHHHH
Confidence 36788999999999998754 233222111 1000 1111 1111 113454444432 2233 356677
Q ss_pred HHhhccChhhHhhhhh-hhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 028844 81 TGIKYSSPTLASAMGN-LIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIV 138 (203)
Q Consensus 81 ~gl~~t~a~~asil~~-~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l 138 (203)
.-++.++-+.|.-+.+ +.=.|+++.+..+..|....+ .++|..+...|+.+.
T Consensus 71 ~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~------a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 71 LTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGL------ALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHhcCCceeeeeecchhHHHHHHHHHHHhccccccce------eehhhhHHhhhhhhe
Confidence 8888999888887765 677788888877655555555 889999998888653
No 81
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=86.22 E-value=6.6 Score=32.43 Aligned_cols=109 Identities=20% Similarity=0.227 Sum_probs=80.4
Q ss_pred CCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhhhhhh
Q 028844 23 MSNFVYVVYYNALGTFILLH-YFIYNTYRSKGP----VLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNL 97 (203)
Q Consensus 23 ~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~----~~~~~~~~~~~~lgl~g~~l~~~~~~~gl~~t~a~~asil~~~ 97 (203)
..-++..++...++..+++. .++. +.+... ..+...+..+++-|+.. ..-..+-.+-++-++.+.-+..-++
T Consensus 183 f~d~dtmfYnNllslPiL~~~s~~~--edws~~n~annl~~d~l~am~ISgl~s-vgiSy~saWcvrVtSSTtySMvGAL 259 (309)
T COG5070 183 FKDFDTMFYNNLLSLPILLSFSFLF--EDWSPGNLANNLSVDSLMAMFISGLCS-VGISYCSAWCVRVTSSTTYSMVGAL 259 (309)
T ss_pred cchhhHHHHhhhHHHHHHHHHHHHh--ccCCcchhhcCCChHHHHHHHHHHHHH-hhhhhccceeEeehhhhHHHHHHHh
Confidence 66788899999999999887 5554 332211 12333445667777765 4445666677888888888888888
Q ss_pred hHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHh
Q 028844 98 IPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSL 140 (203)
Q Consensus 98 ~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~ 140 (203)
.-.-.++-+.++++|+.+.. ++..+++++..-.+-..
T Consensus 260 NKlp~alaGlvffdap~nf~------si~sillGflsg~iYav 296 (309)
T COG5070 260 NKLPIALAGLVFFDAPVNFL------SIFSILLGFLSGAIYAV 296 (309)
T ss_pred hhChHHHhhhhhcCCchhHH------HHHHHHHHHHHHHHHHH
Confidence 77777788899999999999 99999999887666543
No 82
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.18 E-value=6.2 Score=33.91 Aligned_cols=121 Identities=21% Similarity=0.247 Sum_probs=81.9
Q ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHH-HHHHhhhcC----CCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028844 11 MITLGKAAMSS-GMSNFVYVVYYNALGTFILLH-YFIYNTYRS----KGP-VLTFSLLCKFFMLGVLGICLVQIFAITGI 83 (203)
Q Consensus 11 ~~i~~k~~~~~-~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~----~~~-~~~~~~~~~~~~lgl~g~~l~~~~~~~gl 83 (203)
..+..|...+. +.+-+.+.++..+.+...+.. .++.+ +.. ... -.+...+..+.+-+++| ..-.++.++-.
T Consensus 172 ~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~g-e~~~l~~~~~~~~~~~~~~~~~lScv~g-f~isy~s~~ct 249 (314)
T KOG1444|consen 172 FVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITG-ELDALSLNFDNWSDSSVLVVMLLSCVMG-FGISYTSFLCT 249 (314)
T ss_pred HHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhc-chHHHHhhcccccchhHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 34445555543 477788888888888777776 44431 111 001 11234455666666676 55567777888
Q ss_pred hccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 028844 84 KYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS 139 (203)
Q Consensus 84 ~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~ 139 (203)
+.+|+...++.-...-..+.+...++++++.++. ..+|+.+++.|-+.-.
T Consensus 250 ~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~------n~~gll~~~~ggv~Y~ 299 (314)
T KOG1444|consen 250 RVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFL------NVIGLLVGFFGGVLYS 299 (314)
T ss_pred hhccccceeehhhhhhHHHHHHHHhcCCceechh------hhHHHHHHhhhhhHHh
Confidence 8888888888875565666666677788999999 9999999999987754
No 83
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=86.18 E-value=16 Score=31.22 Aligned_cols=129 Identities=19% Similarity=0.205 Sum_probs=79.7
Q ss_pred hhHHHHHHHHHHH-HHHHhCCCCHHHHHHHHHHHHHHHHH----H-HHHHhhhcC--CCCCCCHHHHHH---------HH
Q 028844 3 LVEIGEVGMITLG-KAAMSSGMSNFVYVVYYNALGTFILL----H-YFIYNTYRS--KGPVLTFSLLCK---------FF 65 (203)
Q Consensus 3 ~~~~~wg~~~i~~-k~~~~~~~~p~~~~~~R~~ia~i~l~----~-~~~~~~~~~--~~~~~~~~~~~~---------~~ 65 (203)
+++++-+.-++.- |.....+++|...+.+.-..+..++. | .+... .+. ..++-.+.+|.. .+
T Consensus 183 iaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~-~~sfS~~~~g~~eD~~~~~~~~~e~p~l 261 (372)
T KOG3912|consen 183 IAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPS-GDSFSCNPRGVLEDWGDAFAALQESPSL 261 (372)
T ss_pred HHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheec-CCcCcCCCCcchhhHHHHHHHhcCCchh
Confidence 4566666666654 33333469999999999887744443 2 22210 111 112222333332 12
Q ss_pred HHHHHHHHHHHHHHHH-H---hhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 028844 66 MLGVLGICLVQIFAIT-G---IKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIV 138 (203)
Q Consensus 66 ~lgl~g~~l~~~~~~~-g---l~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l 138 (203)
..++.+......+|+. | -++.++++=.++-.+-..+..+++.....|+++.- |+.|.++-..|+.+-
T Consensus 262 ~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~ll------qilGFliLi~Gi~lY 332 (372)
T KOG3912|consen 262 AVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLL------QILGFLILIMGIILY 332 (372)
T ss_pred HHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 3334443333333332 3 34567777778878777888888999999999999 999999999999864
No 84
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=85.79 E-value=13 Score=32.01 Aligned_cols=107 Identities=15% Similarity=0.169 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCC-------CCC----HHHHHHHHHHHHHHHHHHHHHHHHHhhccChhh
Q 028844 23 MSNFVYVVYYNALGTFILLH-YFIYNTYRSKGP-------VLT----FSLLCKFFMLGVLGICLVQIFAITGIKYSSPTL 90 (203)
Q Consensus 23 ~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~-------~~~----~~~~~~~~~lgl~g~~l~~~~~~~gl~~t~a~~ 90 (203)
-+|.+..+.=.-.-.+.++| .+.. |+.... ..+ .+....+.+-|+.. ++--...+.=+..|+.-.
T Consensus 195 ~~P~~ti~~l~p~M~~~Ll~~~l~f--EG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~la-F~l~~sEflLl~~Ts~lt 271 (349)
T KOG1443|consen 195 RNPIDTIFHLQPWMSIGLLPLSLLF--EGLHLITSSSIFRFQDTGLILRVIGLISLGGLLA-FLLEFSEFLLLSRTSSLT 271 (349)
T ss_pred CCCeeeHHHhhhHHHHHHHHHHHHH--cccccchhhhHHHhcCccHHHHHHHHHHHHHHHH-HHHHHHHHheeeecccee
Confidence 45777766666566666666 4444 332110 111 12222222222222 222222333345566655
Q ss_pred HhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 028844 91 ASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIV 138 (203)
Q Consensus 91 asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l 138 (203)
-++..-.-=+.+.+++....+|+++.. .+.|..++..|+..=
T Consensus 272 lSIaGI~Kel~tl~la~ii~~d~ls~l------N~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 272 LSIAGIVKEVCTLLLAIIILKDQLSLL------NWLGLAICLAGILLH 313 (349)
T ss_pred eeHHHHHHHHHHHHHHHHHhhcchhhh------HHHHHHHHHHHHHHh
Confidence 555555566778899999999999999 999999999999764
No 85
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=81.83 E-value=12 Score=32.70 Aligned_cols=120 Identities=18% Similarity=0.173 Sum_probs=73.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhhh-hhhhHHHHHHHHHHHhhh--hhhhccccchhHHHHHHHHHH
Q 028844 57 TFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAM-GNLIPGITFLLAVFFRME--KVAIRSRSSQAKILGTVVSIA 133 (203)
Q Consensus 57 ~~~~~~~~~~lgl~g~~l~~~~~~~gl~~t~a~~asil-~~~~Pv~~~ila~~~~~E--~~~~~~~~~~~~~~G~~l~~~ 133 (203)
+...+....+.|++= ......|-.+++|.+.+...-+ ..+.-++-.++-.++.++ .+ ..+..++..++|++++++
T Consensus 69 ~~~~l~~~~l~G~lW-GIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l-~~~~~g~~vL~Gv~v~Li 146 (344)
T PF06379_consen 69 PASTLFWTFLFGVLW-GIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDEL-LATPSGQIVLLGVAVCLI 146 (344)
T ss_pred ChhHHHHHHHHHHHH-hcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCccccc-ccCCCchhhhhHHHHHHH
Confidence 344555566666664 4556778889999888775443 456656665554444332 11 112345668999999999
Q ss_pred HHHHHHhccCCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 028844 134 GAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIF 187 (203)
Q Consensus 134 Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~ll~l~aa~~~a~y~il 187 (203)
|+.+....+... +.+.++..++.+.-+|.+.++.|.+.-|++.+-
T Consensus 147 GIai~g~AG~~K---------e~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g 191 (344)
T PF06379_consen 147 GIAICGKAGSMK---------EKELGEEAKEFNFKKGLIIAVLSGVMSACFNFG 191 (344)
T ss_pred HHHHHhHHHHhh---------hhhhccchhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 999875332110 001111123345669999999999988888764
No 86
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=76.80 E-value=41 Score=27.73 Aligned_cols=117 Identities=9% Similarity=-0.011 Sum_probs=68.3
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH-HH-HHHHhhhcCCC----CCCCHHHHHHHHHHHHHHHHHH
Q 028844 2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFIL-LH-YFIYNTYRSKG----PVLTFSLLCKFFMLGVLGICLV 75 (203)
Q Consensus 2 l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l-~~-~~~~~~~~~~~----~~~~~~~~~~~~~lgl~g~~l~ 75 (203)
++++++-|...+.....+.++-.|+..--.+..+-+++. +. ....+.++..+ ...+...|...+..+ ..
T Consensus 120 l~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~~a-----~g 194 (244)
T PF04142_consen 120 LAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIFLQA-----IG 194 (244)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHHHHH-----Hh
Confidence 345667788888886666653344444444443333333 33 33331111011 112333333333333 33
Q ss_pred HHHHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHH
Q 028844 76 QIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTV 129 (203)
Q Consensus 76 ~~~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~ 129 (203)
-.....-+||.+.-.=..-.+..-+++.++++.+++++++.. ..+|..
T Consensus 195 Gllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~------f~lg~~ 242 (244)
T PF04142_consen 195 GLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLS------FLLGAA 242 (244)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchH------Hhhhee
Confidence 344556788888877777778888899999999999999988 776654
No 87
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=72.83 E-value=33 Score=24.76 Aligned_cols=50 Identities=10% Similarity=0.129 Sum_probs=31.9
Q ss_pred HhhccChhhHhhhhh-hhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHH
Q 028844 82 GIKYSSPTLASAMGN-LIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFI 137 (203)
Q Consensus 82 gl~~t~a~~asil~~-~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~ 137 (203)
|.+.-++++--++.- .+-..-+.++.++++|+++++ ...|..+.+.++.+
T Consensus 55 G~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n------~l~af~~i~~av~f 105 (108)
T PF04342_consen 55 GYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWN------YLWAFLCILGAVYF 105 (108)
T ss_pred hccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHH------HHHHHHHHHHhhhe
Confidence 333344444444432 333334456788999999999 88888887766654
No 88
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=72.80 E-value=8.4 Score=30.86 Aligned_cols=94 Identities=14% Similarity=-0.001 Sum_probs=56.0
Q ss_pred HhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCC---------CCCCCCCCCCCCCCC
Q 028844 91 ASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPL---------LGFSSPSNSNIQLPV 161 (203)
Q Consensus 91 asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~---------~~~~~~~~~~~~~~~ 161 (203)
....-+..|+++++..+...+||.+.. |+++..+...|++.-...+.+.. ...+.+.+ .+. .
T Consensus 7 ~~~~~s~~l~~v~l~~~~~~~~~~~~~------~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~--~~~-~ 77 (222)
T TIGR00803 7 HIIFKQNNLVLIALGNLLAAGKQVTQL------KILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQS--SAK-T 77 (222)
T ss_pred hHHHHhcchHHHHHhcccccceeeehH------HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCC--Ccc-c
Confidence 344556778888888888888888877 89999888888864322111000 00000000 000 0
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028844 162 SEYSNWALGGLLLTVTCFSSATWKIFQVQSYF 193 (203)
Q Consensus 162 ~~~~~~~lG~ll~l~aa~~~a~y~il~~~~~~ 193 (203)
....+...|..+.+.++++-+.-.+++.+.++
T Consensus 78 ~~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k 109 (222)
T TIGR00803 78 LMFGNPVVGLSAVLSALLSSGFAGVYFEKILK 109 (222)
T ss_pred cccccHHHHHHHHHHHHHHHhhhHHHHHHccc
Confidence 11124567888888888887777787777554
No 89
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=65.00 E-value=7.6 Score=28.01 Aligned_cols=37 Identities=11% Similarity=0.165 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 028844 97 LIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS 139 (203)
Q Consensus 97 ~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~ 139 (203)
..-+...+..+..-++|+++. .++|..++++|+.++.
T Consensus 66 vfI~~Sl~W~w~vdg~~Pd~~------D~iGa~i~L~G~~iI~ 102 (107)
T PF02694_consen 66 VFIVASLLWGWLVDGVRPDRW------DWIGAAICLVGVAIIL 102 (107)
T ss_pred hHHHHHHHHHhhhcCcCCChH------HHHhHHHHHHhHHheE
Confidence 344455556677777888887 9999999999998875
No 90
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.77 E-value=51 Score=23.54 Aligned_cols=30 Identities=10% Similarity=0.320 Sum_probs=25.3
Q ss_pred HHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 028844 103 FLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIV 138 (203)
Q Consensus 103 ~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l 138 (203)
..++.+++||++++. .+.|..+...|+.++
T Consensus 84 v~Fsvfyl~epl~~~------~l~a~~~i~gav~fi 113 (116)
T COG3169 84 VPFSVFYLKEPLRWN------YLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHcCcchHH------HHHHHHHHHHHHHHh
Confidence 456889999999999 999988888887765
No 91
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=62.17 E-value=24 Score=30.07 Aligned_cols=69 Identities=14% Similarity=0.157 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhhccChhhHhhhhh-hhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 028844 71 GICLVQIFAITGIKYSSPTLASAMGN-LIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS 139 (203)
Q Consensus 71 g~~l~~~~~~~gl~~t~a~~asil~~-~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~ 139 (203)
.......+.+.|+++-+++...-+.+ ..-.++.+-+.++++|--+...+.-..-..|..+.+.|+.++.
T Consensus 222 ~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~ 291 (300)
T PF05653_consen 222 TAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLS 291 (300)
T ss_pred HHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheee
Confidence 33556677778999988877665543 5666777788899998655442222334567778888888775
No 92
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=56.21 E-value=37 Score=19.52 Aligned_cols=27 Identities=15% Similarity=-0.060 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028844 169 LGGLLLTVTCFSSATWKIFQVQSYFLA 195 (203)
Q Consensus 169 lG~ll~l~aa~~~a~y~il~~~~~~~~ 195 (203)
+=.++-++.+.+|+.|.|....+....
T Consensus 6 liVl~Pil~A~~Wa~fNIg~~Al~Q~q 32 (36)
T CHL00196 6 LVIAAPVLAAASWALFNIGRLAIQQIQ 32 (36)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 345667889999999999877666554
No 93
>PF06298 PsbY: Photosystem II protein Y (PsbY); InterPro: IPR009388 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbY found in PSII. In higher plants, two related PsbY proteins exist, PsbY-1 and PsbY-2, which appear to function as a heterodimer. In spinach and Arabidopsis, these two proteins arise from a single-copy nuclear gene that is processed in the chloroplast. By contrast, prokaryotic and organellar chromosomes encode a single PsbY protein, as found in cyanobacteria and red algae, indicating a duplication event in the evolution of higher plants []. PsbY has two low manganese-dependent activities: a catalase-like activity and an L-arginine metabolising activity that converts L-arginine into ornithine and urea []. In addition, a redox-active group is thought to be present in the protein. In cyanobacteria, PsbY deletion mutants have a slightly impaired PSII that is less capable of coping with low levels of calcium ions than the wild-type.; GO: 0030145 manganese ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane
Probab=55.13 E-value=38 Score=19.46 Aligned_cols=28 Identities=21% Similarity=-0.001 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028844 169 LGGLLLTVTCFSSATWKIFQVQSYFLAL 196 (203)
Q Consensus 169 lG~ll~l~aa~~~a~y~il~~~~~~~~~ 196 (203)
+=.+.-++.+.+|+.|.|....+....+
T Consensus 6 liVl~Pil~A~gWa~fNIg~~Al~Q~~~ 33 (36)
T PF06298_consen 6 LIVLLPILPAAGWALFNIGRAALNQLQR 33 (36)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3356667889999999999877766543
No 94
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=51.25 E-value=47 Score=25.37 Aligned_cols=35 Identities=14% Similarity=0.236 Sum_probs=23.9
Q ss_pred HhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhc
Q 028844 82 GIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIR 117 (203)
Q Consensus 82 gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~ 117 (203)
|+.--+.-.++.+.++.|.++.+++.++ -+++...
T Consensus 68 Gi~EkslL~sA~LvYi~PL~~l~v~~~L-a~~L~~~ 102 (150)
T COG3086 68 GIEEKSLLKSALLVYIFPLVGLFLGAIL-AQYLFFS 102 (150)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHH-HHHHhhh
Confidence 3444456678889999999998888765 3344433
No 95
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=50.44 E-value=39 Score=25.87 Aligned_cols=28 Identities=14% Similarity=0.113 Sum_probs=20.2
Q ss_pred hhccChhhHhhhhhhhHHHHHHHHHHHh
Q 028844 83 IKYSSPTLASAMGNLIPGITFLLAVFFR 110 (203)
Q Consensus 83 l~~t~a~~asil~~~~Pv~~~ila~~~~ 110 (203)
+...+.-.++.+.++.|++..+.+..+.
T Consensus 69 i~e~~llkaa~lvYllPLl~li~ga~l~ 96 (154)
T PRK10862 69 IAEGSLLRSALLVYMTPLVGLFLGAALF 96 (154)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556688888999999888776554
No 96
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=49.29 E-value=17 Score=31.04 Aligned_cols=65 Identities=17% Similarity=0.266 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHhhccChhh----HhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 028844 69 VLGICLVQIFAITGIKYSSPTL----ASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS 139 (203)
Q Consensus 69 l~g~~l~~~~~~~gl~~t~a~~----asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~ 139 (203)
++...+.|.+-..|+...++-. .++...+=-.+..+++.+.|+.++++. .|+|..+.+.|.++-+
T Consensus 245 Ll~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~------h~lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 245 LLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPW------HWLGAALVFFGTLLFA 313 (330)
T ss_pred HHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHH------HHHHHHHHHHHHHHHH
Confidence 3445777887777876654433 344556677888899999999999999 9999999999998765
No 97
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=47.89 E-value=1.2e+02 Score=22.89 Aligned_cols=29 Identities=3% Similarity=-0.267 Sum_probs=24.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028844 166 NWALGGLLLTVTCFSSATWKIFQVQSYFL 194 (203)
Q Consensus 166 ~~~lG~ll~l~aa~~~a~y~il~~~~~~~ 194 (203)
+.....+-.+.++..|--|...+||..+.
T Consensus 118 ~~i~~l~~~li~a~IwipYf~~S~RVK~T 146 (149)
T PF10754_consen 118 EAIRELLRSLIAAAIWIPYFLRSKRVKNT 146 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhhh
Confidence 34578888999999999999999998763
No 98
>PRK02237 hypothetical protein; Provisional
Probab=47.81 E-value=1.1e+02 Score=22.26 Aligned_cols=37 Identities=8% Similarity=0.117 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 028844 97 LIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS 139 (203)
Q Consensus 97 ~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~ 139 (203)
..-+...+..+..-++|+++. .++|..++++|+.++.
T Consensus 68 vyI~~Sl~W~w~vdg~~Pd~~------D~iGa~v~L~G~~iI~ 104 (109)
T PRK02237 68 VYVAGSLLWLWVVDGVRPDRW------DWIGAAICLVGMAVIM 104 (109)
T ss_pred HHHHHHHHHHHHhcCcCCChh------HHHhHHHHHHhHHHhe
Confidence 334444455677777888877 9999999999998875
No 99
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=47.09 E-value=1.6e+02 Score=24.66 Aligned_cols=179 Identities=12% Similarity=-0.068 Sum_probs=94.8
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028844 2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI 80 (203)
Q Consensus 2 l~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~ 80 (203)
+.+.+.+|++++=.|.- +. -|++.+-++- ...+++. ..... -+ ..++... .-++-|.+- ...+.+-.
T Consensus 6 ~va~~~fGs~~vPvK~~-~~-gDg~~fQw~~---~~~i~~~g~~v~~-~~-~~p~f~p----~amlgG~lW-~~gN~~~v 73 (254)
T PF07857_consen 6 IVAVLFFGSNFVPVKKF-DT-GDGFFFQWVM---CSGIFLVGLVVNL-IL-GFPPFYP----WAMLGGALW-ATGNILVV 73 (254)
T ss_pred HHHHHHhcccceeeEec-cC-CCcHHHHHHH---HHHHHHHHHHHHH-hc-CCCccee----HHHhhhhhh-hcCceeeh
Confidence 56789999999999974 44 6775444332 2222222 11110 11 1222221 122333433 45566667
Q ss_pred HHhhccChhhHhhhhhh-hHHHHHHHHHH-HhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCC------CC--C-C
Q 028844 81 TGIKYSSPTLASAMGNL-IPGITFLLAVF-FRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPP------LL--G-F 149 (203)
Q Consensus 81 ~gl~~t~a~~asil~~~-~Pv~~~ila~~-~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~------~~--~-~ 149 (203)
-.++..+-+.+-.+-+. .-+.-...+++ +|+++.+.-+ ...-..+|++++++|..+..+-+... .. . .
T Consensus 74 pii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~-~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~~~~~ 152 (254)
T PF07857_consen 74 PIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPS-SPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEETPLS 152 (254)
T ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccc-hhHHHHHHHHHHHHHHHheeeecCCCCCccccccccccc
Confidence 78888888888888765 44444444544 4544332221 23347889999999988765422211 00 0 0
Q ss_pred CCCCCCCCCC-----CCC------CCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028844 150 SSPSNSNIQL-----PVS------EYSNWALGGLLLTVTCFSSATWKIFQVQSYF 193 (203)
Q Consensus 150 ~~~~~~~~~~-----~~~------~~~~~~lG~ll~l~aa~~~a~y~il~~~~~~ 193 (203)
.+|.++..+. +.+ ...+...|..+.+.+.+.|+.-.+=..-..+
T Consensus 153 ~~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~ 207 (254)
T PF07857_consen 153 IEDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQD 207 (254)
T ss_pred cccccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHh
Confidence 1111111111 000 1123578999999999999887654444333
No 100
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.90 E-value=22 Score=30.31 Aligned_cols=128 Identities=16% Similarity=0.157 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCC---CCCC-CHHHHHHHHHHHHHHHHHHHH
Q 028844 4 VEIGEVGMITLGKAAMSS-GMSNFVYVVYYNALGTFILLH-YFIYNTYRSK---GPVL-TFSLLCKFFMLGVLGICLVQI 77 (203)
Q Consensus 4 ~~~~wg~~~i~~k~~~~~-~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~---~~~~-~~~~~~~~~~lgl~g~~l~~~ 77 (203)
+.+.-+.+.+-.|..+.. +=.-+.++++....+.++.+| ..+. ++-.. .++. +.+-|..+.+-|++|..+++
T Consensus 193 aSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~ln-ge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgy- 270 (347)
T KOG1442|consen 193 ASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILN-GEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGY- 270 (347)
T ss_pred HHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHc-chHHHHcCcccchHHHHHHHHHHHHHHHHHhhh-
Confidence 334445555666654433 122457888888999999998 5443 22111 1233 45666777777888754443
Q ss_pred HHHHHhhccChhhHhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 028844 78 FAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS 139 (203)
Q Consensus 78 ~~~~gl~~t~a~~asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~ 139 (203)
.-.+-+|.|+|-+=-+=...--..-.++|..+.+|..+.. .|-+-++.+.|-..-.
T Consensus 271 vTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~l------wwtsn~~vLvgs~~YT 326 (347)
T KOG1442|consen 271 VTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGL------WWTSNIVVLVGSLAYT 326 (347)
T ss_pred eeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhh------eeeeeEEEEehhHHHH
Confidence 3344566676643222222233344567888999999998 6777777777776544
No 101
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=43.09 E-value=43 Score=26.10 Aligned_cols=18 Identities=28% Similarity=0.493 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 028844 124 KILGTVVSIAGAFIVSLY 141 (203)
Q Consensus 124 ~~~G~~l~~~Gv~~l~~~ 141 (203)
.++|+++...|++.++.+
T Consensus 12 iilgilli~~gI~~Lv~~ 29 (191)
T PF04156_consen 12 IILGILLIASGIAALVLF 29 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 578888888888877654
No 102
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=42.82 E-value=59 Score=23.98 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=18.6
Q ss_pred ccChhhHhhhhhhhHHHHHHHHHHHh
Q 028844 85 YSSPTLASAMGNLIPGITFLLAVFFR 110 (203)
Q Consensus 85 ~t~a~~asil~~~~Pv~~~ila~~~~ 110 (203)
..+...++.+.+..|++..+++.++.
T Consensus 64 ~~~~~~aa~l~Y~lPll~li~g~~l~ 89 (135)
T PF04246_consen 64 ESSLLKAAFLVYLLPLLALIAGAVLG 89 (135)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455678888888988888876553
No 103
>PRK13240 pbsY photosystem II protein Y; Reviewed
Probab=41.86 E-value=73 Score=18.75 Aligned_cols=26 Identities=12% Similarity=-0.086 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028844 170 GGLLLTVTCFSSATWKIFQVQSYFLA 195 (203)
Q Consensus 170 G~ll~l~aa~~~a~y~il~~~~~~~~ 195 (203)
=.+.-++.+.+|+.|.|....+.+..
T Consensus 7 iVl~Pil~A~~Wa~fNIg~~Al~Q~q 32 (40)
T PRK13240 7 IVLAPILAAAGWAVFNIGKAAREQFQ 32 (40)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 35666788999999999876665544
No 104
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.70 E-value=2.2e+02 Score=25.30 Aligned_cols=86 Identities=16% Similarity=0.139 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH--HHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028844 7 GEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH--YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIK 84 (203)
Q Consensus 7 ~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~--~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~~gl~ 84 (203)
.|..+.-+.|...+. +.-+..--..+.++-++... .+.-+ .|...++-++..-..+..+-++| -.+.+.|.+
T Consensus 200 gWs~slY~i~ql~~n-Lq~Iwieyr~yvLgYvlivgliSfaVC-YK~GPp~d~RS~~ilmWtLqli~----lvl~Yfsvq 273 (452)
T KOG3817|consen 200 GWSISLYVIKQLADN-LQLIWIEYRDYVLGYVLIVGLISFAVC-YKIGPPKDPRSQTILMWTLQLIG----LVLAYFSVQ 273 (452)
T ss_pred cchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhh-hccCCCCCcchhhHHHHHHHHHH----HHHHHHhcc
Confidence 588888888888765 65555555555555444332 11111 12222333333333344444554 344567999
Q ss_pred ccChhhHhhhhhhh
Q 028844 85 YSSPTLASAMGNLI 98 (203)
Q Consensus 85 ~t~a~~asil~~~~ 98 (203)
..+++.|.+|+.+.
T Consensus 274 ~p~~a~A~iI~~lc 287 (452)
T KOG3817|consen 274 HPSAAIAAIIMVLC 287 (452)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999988887653
No 105
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=38.55 E-value=3.1e+02 Score=25.09 Aligned_cols=47 Identities=9% Similarity=0.039 Sum_probs=25.7
Q ss_pred HhhhhhhhHHHHHHHHHH--Hhhhhhhhc-cccchhHHHHHHHHHHHHHH
Q 028844 91 ASAMGNLIPGITFLLAVF--FRMEKVAIR-SRSSQAKILGTVVSIAGAFI 137 (203)
Q Consensus 91 asil~~~~Pv~~~ila~~--~~~E~~~~~-~~~~~~~~~G~~l~~~Gv~~ 137 (203)
++.+++++|+++.+++-+ .+..|+.++ |.|..-+..++.+.+.|+..
T Consensus 310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f 359 (493)
T PRK15462 310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGF 359 (493)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHH
Confidence 778889999999877744 222333222 22333344455555555543
No 106
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=37.79 E-value=20 Score=25.76 Aligned_cols=34 Identities=9% Similarity=0.155 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHh
Q 028844 101 ITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSL 140 (203)
Q Consensus 101 ~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~ 140 (203)
...+..++.-+.++++. .+.|..+|++|+.++.+
T Consensus 71 ~sL~W~~~Vdg~~pdr~------D~~Ga~icl~G~~vil~ 104 (109)
T COG1742 71 ASLAWLWVVDGVRPDRY------DWIGAAICLAGVAVILF 104 (109)
T ss_pred HHHHHHHHHcCcCCcHH------HhhhHHHHHhceeeeEe
Confidence 33344455556666666 99999999999877653
No 107
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=33.69 E-value=1.2e+02 Score=18.93 Aligned_cols=45 Identities=27% Similarity=0.276 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028844 124 KILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQVQSYFL 194 (203)
Q Consensus 124 ~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~ll~l~aa~~~a~y~il~~~~~~~ 194 (203)
.++|..+.++|++.+... +| |.+..+++-..+|.+.-..+|.++.
T Consensus 5 ~v~G~~lv~~Gii~~~lP-Gp-------------------------G~l~i~~GL~iLa~ef~wArr~l~~ 49 (53)
T PF09656_consen 5 GVLGWVLVVAGIIMLPLP-GP-------------------------GLLVIFLGLAILATEFPWARRLLRR 49 (53)
T ss_pred hhHHHHHHHHHHHhhcCC-CC-------------------------cHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 678999999999876521 21 5666777777788888887877653
No 108
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=31.30 E-value=2.6e+02 Score=21.96 Aligned_cols=64 Identities=11% Similarity=0.093 Sum_probs=41.8
Q ss_pred hhhhhhccccchhHHHHHHH-------HHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH
Q 028844 111 MEKVAIRSRSSQAKILGTVV-------SIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSAT 183 (203)
Q Consensus 111 ~E~~~~~~~~~~~~~~G~~l-------~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~ll~l~aa~~~a~ 183 (203)
-|-.-+|..|+.-+.+|+.+ +..|+.++... ++.+..-.....+.+++.++.
T Consensus 88 ~Em~v~KtsP~LYr~LGIfLPLITTNCaVLgvaLln~~---------------------~~~~f~qsv~~gf~a~lGfsl 146 (193)
T COG4657 88 TEMVVRKTSPTLYRLLGIFLPLITTNCAVLGVALLNIN---------------------EGHNFLQSVVYGFGAALGFSL 146 (193)
T ss_pred HHHHHHccCHHHHHHHHHhhhhHhhchHHHHHHHHHhh---------------------hhhhHHHHHHHHhhhHhhHHH
Confidence 34444444444447777765 56677776532 233456677888899999999
Q ss_pred HHHHHHHHHHHh
Q 028844 184 WKIFQVQSYFLA 195 (203)
Q Consensus 184 y~il~~~~~~~~ 195 (203)
-.++-..+++..
T Consensus 147 vmvlfA~iRER~ 158 (193)
T COG4657 147 VMVLFAAIRERL 158 (193)
T ss_pred HHHHHHHHHHHH
Confidence 998887777653
No 109
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=30.76 E-value=3.2e+02 Score=23.32 Aligned_cols=121 Identities=15% Similarity=0.057 Sum_probs=66.4
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCCC--HHHHHHHHHHHHHHHHHHHHHH
Q 028844 3 LVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLT--FSLLCKFFMLGVLGICLVQIFA 79 (203)
Q Consensus 3 ~~~~~wg~~~i~~k~~~~~~~~p~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~~~~--~~~~~~~~~lgl~g~~l~~~~~ 79 (203)
+.+-+++.+.+.-...... .|..++...--+.++++-.. .+. +++....+. ++... ++. ..++.++.+-+.
T Consensus 173 ~GATlYaVSNv~EEflvkn-~d~~elm~~lgLfGaIIsaIQ~i~---~~~~~~tl~w~~~i~~-yl~-f~L~MFllYsl~ 246 (336)
T KOG2766|consen 173 AGATLYAVSNVSEEFLVKN-ADRVELMGFLGLFGAIISAIQFIF---ERHHVSTLHWDSAIFL-YLR-FALTMFLLYSLA 246 (336)
T ss_pred ecceeeeeccccHHHHHhc-CcHHHHHHHHHHHHHHHHHHHHhh---hccceeeEeehHHHHH-HHH-HHHHHHHHHHhh
Confidence 3445566666666665444 88888888888888888777 444 444433333 32222 111 122223333333
Q ss_pred HHHhhccChhh--HhhhhhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 028844 80 ITGIKYSSPTL--ASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS 139 (203)
Q Consensus 80 ~~gl~~t~a~~--asil~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~ 139 (203)
-.=++..+++. -+++++ -.+..++ ..|+-++++. -.++......|.++-.
T Consensus 247 pil~k~~~aT~~nlslLTs--Dmwsl~i--~~FgYhv~wL------Y~laF~~i~~GliiYs 298 (336)
T KOG2766|consen 247 PILIKTNSATMFNLSLLTS--DMWSLLI--RTFGYHVDWL------YFLAFATIATGLIIYS 298 (336)
T ss_pred HHheecCCceEEEhhHhHH--HHHHHHH--HHHhcchhhh------hHHHHHHHHHhhEEee
Confidence 33344444432 333332 2333333 4556668888 8889999999987654
No 110
>PF03116 NQR2_RnfD_RnfE: NQR2, RnfD, RnfE family; InterPro: IPR004338 This family of proteins describes the Nqr2 (NqrB) subunit of the bacterial 6-subunit sodium-translocating NADH-ubiquinone oxidoreductase (i.e. a respiration linked sodium pump). In Vibrio cholerae, it negatively regulates the expression of virulence factors through inhibiting (by an unknown mechanism) the transcription of the transcriptional activator ToxT []. The family also includes RnfD, which is involved in nitrogen fixation. The similarity of RnfD to NADH-ubiquinone oxidoreductases was previously noted [].; GO: 0006810 transport, 0016020 membrane
Probab=29.01 E-value=3.7e+02 Score=23.07 Aligned_cols=65 Identities=14% Similarity=0.151 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHH-HHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhhhhh-hhHHH
Q 028844 31 YYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGN-LIPGI 101 (203)
Q Consensus 31 ~R~~ia~i~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~~gl~~t~a~~asil~~-~~Pv~ 101 (203)
.....++.++.. .... +....++.++.++.+-+..| .+....-+.|-.-.+...|-++.| ..|++
T Consensus 235 ~~llsGg~lf~AfFm~T--Dp~TsP~t~~Gr~iyG~~~G----~lt~~ir~~g~~p~Gv~fAiLl~N~~~PLI 301 (313)
T PF03116_consen 235 FHLLSGGLLFGAFFMAT--DPVTSPMTRKGRIIYGILIG----VLTFLIRFFGGYPEGVMFAILLMNAFVPLI 301 (313)
T ss_pred HHHHHHHHHHHHHHHcc--CCCCCCCCcccHHHHHHHHH----HHHHHHHHhCCcchHHHHHHHHHHhhHHHh
Confidence 344444444443 2233 33333444444444444333 444555566744445556666665 45543
No 111
>PRK11056 hypothetical protein; Provisional
Probab=26.11 E-value=2.7e+02 Score=20.50 Aligned_cols=44 Identities=20% Similarity=0.269 Sum_probs=34.4
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 028844 95 GNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIV 138 (203)
Q Consensus 95 ~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l 138 (203)
.+.-|+++.+++...+++|--.+..+.-.-.++...-++|+..-
T Consensus 36 FSiFPlIaLvLavycLyQ~Yl~~~m~eg~P~~a~acFflG~f~y 79 (120)
T PRK11056 36 FSIFPLIALVLAVYCLHQRYLNRPMPEGLPGLAAACFFLGVFLY 79 (120)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH
Confidence 45789999999999988877666666666677888888888754
No 112
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=24.26 E-value=2.9e+02 Score=23.72 Aligned_cols=142 Identities=11% Similarity=0.145 Sum_probs=80.8
Q ss_pred CCCH--HHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhhhhh--
Q 028844 22 GMSN--FVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGN-- 96 (203)
Q Consensus 22 ~~~p--~~~~~~R~~ia~i~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lgl~g~~l~~~~~~~gl~~t~a~~asil~~-- 96 (203)
++.| +.+++.++.+=..+-+. .... +.++...++|. ...++.+. .....+-+-++-|.+=-...++-.
T Consensus 70 gfkp~GWylTlvQf~~Ysg~glie~~~~---~~k~r~iP~rt---Y~~la~~t-~gtmGLsn~SlgYLNYPtQviFKccK 142 (367)
T KOG1582|consen 70 GFKPFGWYLTLVQFLVYSGFGLIELQLI---QTKRRVIPWRT---YVILAFLT-VGTMGLSNGSLGYLNYPTQVIFKCCK 142 (367)
T ss_pred cCcccchHHHHHHHHHHHhhhheEEEee---cccceecchhH---hhhhHhhh-hhccccCcCccccccCcHHHHHHhhh
Confidence 4554 35666666654444333 2111 11122344543 33333332 333444444555554434444433
Q ss_pred hhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHH
Q 028844 97 LIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTV 176 (203)
Q Consensus 97 ~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~ll~l~ 176 (203)
+.|+. +.+.++-+.|-... ...+..+-.+|.+.....|... ..+-+..|..+.-+
T Consensus 143 liPVm--iggifIqGkRY~v~------d~~aA~lm~lGli~FTLADs~~-----------------sPNF~~~Gv~mIsg 197 (367)
T KOG1582|consen 143 LIPVM--IGGIFIQGKRYGVH------DYIAAMLMSLGLIWFTLADSQT-----------------SPNFNLIGVMMISG 197 (367)
T ss_pred hhhhh--heeeeeccccccHH------HHHHHHHHHHHHHhhhhccccc-----------------CCCcceeeHHHHHH
Confidence 56655 56777776666666 9999999999998876544321 11224579988888
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 028844 177 TCFSSATWKIFQVQSYFLA 195 (203)
Q Consensus 177 aa~~~a~y~il~~~~~~~~ 195 (203)
|-++=|.---+|.+.+...
T Consensus 198 ALl~DA~iGNvQEk~m~~~ 216 (367)
T KOG1582|consen 198 ALLADAVIGNVQEKAMKMN 216 (367)
T ss_pred HHHHHHHhhHHHHHHHhhC
Confidence 8888888888888877653
No 113
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=23.55 E-value=63 Score=24.36 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=22.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028844 166 NWALGGLLLTVTCFSSATWKIFQVQS 191 (203)
Q Consensus 166 ~~~lG~ll~l~aa~~~a~y~il~~~~ 191 (203)
+..+|-+++-.-.+.|++|.+.+|.+
T Consensus 103 n~~LgwIL~gVf~lIWslY~~~~~~l 128 (138)
T PF07123_consen 103 NNLLGWILLGVFGLIWSLYFVYTSTL 128 (138)
T ss_pred CchhHHHHHHHHHHHHHHHHhhcccc
Confidence 45689999989999999999998763
No 114
>PF11168 DUF2955: Protein of unknown function (DUF2955); InterPro: IPR022604 Some members in this group of proteins with unknown function are annotated as membrane proteins. However, this cannot be confirmed.
Probab=23.44 E-value=2.7e+02 Score=20.74 Aligned_cols=18 Identities=22% Similarity=0.250 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028844 169 LGGLLLTVTCFSSATWKI 186 (203)
Q Consensus 169 lG~ll~l~aa~~~a~y~i 186 (203)
....+.+...++|..|.-
T Consensus 72 ~~~~l~v~l~~~~~f~~~ 89 (140)
T PF11168_consen 72 VVMLLLVFLLFFWSFYRM 89 (140)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555555543
No 115
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=23.32 E-value=3.8e+02 Score=21.21 Aligned_cols=44 Identities=27% Similarity=0.424 Sum_probs=31.6
Q ss_pred hhhHHHHHHHHHHHhhhhhhh-----ccc--cchhHHHHHHHHHHHHHHHH
Q 028844 96 NLIPGITFLLAVFFRMEKVAI-----RSR--SSQAKILGTVVSIAGAFIVS 139 (203)
Q Consensus 96 ~~~Pv~~~ila~~~~~E~~~~-----~~~--~~~~~~~G~~l~~~Gv~~l~ 139 (203)
...|+...++++...+||.+. ++| ...+++.+.++.++|+.++.
T Consensus 160 ~~~~~~~pll~~~~~~~r~~~~l~r~~~wl~~~~~~i~~~i~~i~G~~l~~ 210 (214)
T PF11139_consen 160 ASLPALLPLLAYLVAPERAEPWLERLRSWLRRHSRQILAVILLIVGALLLG 210 (214)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 467888888899888877632 111 33457788999999998764
No 116
>PLN00082 photosystem II reaction centre W protein (PsbW); Provisional
Probab=22.57 E-value=53 Score=21.41 Aligned_cols=26 Identities=23% Similarity=0.148 Sum_probs=21.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028844 166 NWALGGLLLTVTCFSSATWKIFQVQS 191 (203)
Q Consensus 166 ~~~lG~ll~l~aa~~~a~y~il~~~~ 191 (203)
+..+|-+++-.-++.|+.|.+.++.+
T Consensus 31 ~~~LgwIL~gvf~liw~ly~~~~~~l 56 (67)
T PLN00082 31 NGKLTWILVGVTALIWALYFSYSSTL 56 (67)
T ss_pred CchhhhHHHHHHHHHHHHHhheeccc
Confidence 45689889889999999999987654
No 117
>PRK11103 PTS system mannose-specific transporter subunit IID; Provisional
Probab=22.00 E-value=1.7e+02 Score=24.87 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=17.2
Q ss_pred hhhhhhHHHHHHHHHHHhhhhhhhc
Q 028844 93 AMGNLIPGITFLLAVFFRMEKVAIR 117 (203)
Q Consensus 93 il~~~~Pv~~~ila~~~~~E~~~~~ 117 (203)
++-.+.|+..+++.+.++|++.+..
T Consensus 238 I~P~lLPl~~~~~~y~llkKk~~~~ 262 (282)
T PRK11103 238 LMPGLVPLLLTFACMWLLRKKVNAL 262 (282)
T ss_pred HhhhhHHHHHHHHHHHHHhCCccHH
Confidence 4445778777777777777776655
No 118
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=21.26 E-value=2.4e+02 Score=18.13 Aligned_cols=12 Identities=8% Similarity=0.166 Sum_probs=8.1
Q ss_pred HHhhhhhhhccc
Q 028844 108 FFRMEKVAIRSR 119 (203)
Q Consensus 108 ~~~~E~~~~~~~ 119 (203)
.++.+|+++.|.
T Consensus 28 ~~lS~~LT~Gri 39 (60)
T PF03818_consen 28 YWLSKKLTRGRI 39 (60)
T ss_pred HHHHHHHhCCCc
Confidence 356778888854
No 119
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.79 E-value=3.4e+02 Score=23.63 Aligned_cols=67 Identities=10% Similarity=0.154 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhccChhhHhhhhh-hhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 028844 73 CLVQIFAITGIKYSSPTLASAMGN-LIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS 139 (203)
Q Consensus 73 ~l~~~~~~~gl~~t~a~~asil~~-~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~ 139 (203)
.......+.|++.-+++..+-+.+ +--.++..-+.+++||--.-.-..-.....|.+..+.|+.++-
T Consensus 238 ~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~ 305 (335)
T KOG2922|consen 238 STQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLH 305 (335)
T ss_pred HHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEee
Confidence 555666778888888877766655 4456667778899998765432223335667777888887763
No 120
>TIGR00828 EIID-AGA PTS system, mannose/fructose/sorbose family, IID component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.
Probab=20.53 E-value=1.9e+02 Score=24.43 Aligned_cols=25 Identities=28% Similarity=0.198 Sum_probs=18.0
Q ss_pred hhhhhhHHHHHHHHHHHhhhhhhhc
Q 028844 93 AMGNLIPGITFLLAVFFRMEKVAIR 117 (203)
Q Consensus 93 il~~~~Pv~~~ila~~~~~E~~~~~ 117 (203)
++-.+.|+..+++.+.++|+|.+..
T Consensus 228 I~P~llPl~~~~~~y~llkKk~~~~ 252 (271)
T TIGR00828 228 LMPGLLPLGLTLLMYWLLRKKVNPV 252 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCCCcHH
Confidence 4445778888888888887776655
No 121
>PF07947 YhhN: YhhN-like protein; InterPro: IPR012506 The members of this family are similar to the hypothetical protein yhhN expressed by Escherichia coli (P37616 from SWISSPROT). Many of the members of this family are annotated as being possible transmembrane proteins, and in fact they all have a high proportion of hydrophobic residues. ; GO: 0016021 integral to membrane
Probab=20.20 E-value=4.1e+02 Score=20.36 Aligned_cols=41 Identities=10% Similarity=0.053 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 028844 124 KILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKI 186 (203)
Q Consensus 124 ~~~G~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~ll~l~aa~~~a~y~i 186 (203)
-..|++.+.+|=.++. + .+.....|....+++=+||.....
T Consensus 32 i~~gL~~s~~GD~~L~--~--------------------~~~~f~~Gl~~F~~ahi~Y~~~f~ 72 (185)
T PF07947_consen 32 ILAGLLFSALGDVLLL--D--------------------NKNFFLAGLGAFLLAHICYIIAFL 72 (185)
T ss_pred HHHHHHHHHHHHHHHc--c--------------------chHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777776654 1 123467788888888888887776
No 122
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=20.09 E-value=3.9e+02 Score=20.70 Aligned_cols=27 Identities=15% Similarity=0.130 Sum_probs=16.0
Q ss_pred hhhhccccchhHHHHHHHHHHHHHHHH
Q 028844 113 KVAIRSRSSQAKILGTVVSIAGAFIVS 139 (203)
Q Consensus 113 ~~~~~~~~~~~~~~G~~l~~~Gv~~l~ 139 (203)
+..+.+.....|.+|.+++++|..+..
T Consensus 65 ~~~~~~~H~~~q~~~~~~~i~g~~~~~ 91 (191)
T cd08760 65 DPVWFYLHAGLQLLAVLLAIAGFVLGI 91 (191)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455556777777777776654
Done!