Query 028844
Match_columns 203
No_of_seqs 201 out of 1542
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 04:57:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028844.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028844hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.8 2.3E-08 7.7E-13 74.7 7.6 70 66-141 34-104 (137)
2 3b5d_A Multidrug transporter E 98.7 5.2E-08 1.8E-12 70.0 8.5 69 66-140 34-103 (110)
3 3v5u_A Uncharacterized membran 18.6 88 0.003 25.7 3.4 21 108-134 274-294 (320)
4 2hac_A T-cell surface glycopro 10.5 2E+02 0.0068 15.4 2.2 16 102-117 16-31 (33)
5 3arc_L Photosystem II reaction 10.0 2.6E+02 0.0087 15.2 3.8 20 166-185 16-35 (37)
6 3mp7_B Preprotein translocase 6.9 2E+02 0.007 17.5 1.5 26 112-137 23-48 (61)
7 3arc_T Photosystem II reaction 5.7 2.5E+02 0.0087 14.8 1.2 14 104-117 17-30 (32)
8 1v54_M VIIIB, IX, cytochrome C 5.4 3.3E+02 0.011 15.6 1.7 15 124-138 15-29 (46)
9 2jp3_A FXYD domain-containing 5.3 4.8E+02 0.016 16.2 2.5 16 124-139 22-37 (67)
10 2jo1_A Phospholemman; FXYD1, N 5.1 5E+02 0.017 16.4 2.5 16 124-139 21-36 (72)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.75 E-value=2.3e-08 Score=74.71 Aligned_cols=70 Identities=19% Similarity=0.269 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhhHhhh-hhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHhc
Q 028844 66 MLGVLGICLVQIFAITGIKYSSPTLASAM-GNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLY 141 (203)
Q Consensus 66 ~lgl~g~~l~~~~~~~gl~~t~a~~asil-~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~~ 141 (203)
++++++..+++.++..++++.+++.+..+ .++.|++++++++++++|+++.. +++|+.+.++|++++...
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINLL 104 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhcC
Confidence 57777888999999999999999999888 79999999999999999999999 999999999999988754
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.72 E-value=5.2e-08 Score=70.00 Aligned_cols=69 Identities=19% Similarity=0.273 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhhHhhh-hhhhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHh
Q 028844 66 MLGVLGICLVQIFAITGIKYSSPTLASAM-GNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSL 140 (203)
Q Consensus 66 ~lgl~g~~l~~~~~~~gl~~t~a~~asil-~~~~Pv~~~ila~~~~~E~~~~~~~~~~~~~~G~~l~~~Gv~~l~~ 140 (203)
+.++++..+++.++..++++.|.+.+..+ ..+.|++++++++++++|+++.. |++|+.+.++|++.+..
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 56677778899999999999999999888 78999999999999999999999 99999999999998864
No 3
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=18.58 E-value=88 Score=25.69 Aligned_cols=21 Identities=10% Similarity=-0.042 Sum_probs=10.9
Q ss_pred HHhhhhhhhccccchhHHHHHHHHHHH
Q 028844 108 FFRMEKVAIRSRSSQAKILGTVVSIAG 134 (203)
Q Consensus 108 ~~~~E~~~~~~~~~~~~~~G~~l~~~G 134 (203)
++.+.|+++. +-...+...+.
T Consensus 274 ~~~~~~i~~~------eG~~ll~~Y~~ 294 (320)
T 3v5u_A 274 FAKYSKIGRW------QGILFLALYII 294 (320)
T ss_dssp HHHHSCBSHH------HHHHHHHHHHH
T ss_pred HHhCCcCcHH------HHHHHHHHHHH
Confidence 3445555554 55555555555
No 4
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=10.55 E-value=2e+02 Score=15.35 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=10.5
Q ss_pred HHHHHHHHhhhhhhhc
Q 028844 102 TFLLAVFFRMEKVAIR 117 (203)
Q Consensus 102 ~~ila~~~~~E~~~~~ 117 (203)
..++..++.+||+...
T Consensus 16 gii~T~Ly~R~K~~~~ 31 (33)
T 2hac_A 16 GVILTALFLRVKFSRS 31 (33)
T ss_dssp HHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHhhcc
Confidence 3455667788887654
No 5
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=10.04 E-value=2.6e+02 Score=15.21 Aligned_cols=20 Identities=25% Similarity=0.281 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 028844 166 NWALGGLLLTVTCFSSATWK 185 (203)
Q Consensus 166 ~~~lG~ll~l~aa~~~a~y~ 185 (203)
+.-+|.++.+.-++.++-|.
T Consensus 16 SLy~GLLlifvlavlFssyf 35 (37)
T 3arc_L 16 SLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhc
Confidence 34589999999999988885
No 6
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=6.88 E-value=2e+02 Score=17.49 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=16.2
Q ss_pred hhhhhccccchhHHHHHHHHHHHHHH
Q 028844 112 EKVAIRSRSSQAKILGTVVSIAGAFI 137 (203)
Q Consensus 112 E~~~~~~~~~~~~~~G~~l~~~Gv~~ 137 (203)
+|+++++--..++..|+.+.++|.+-
T Consensus 23 ~KPd~~Ef~~iak~~~iG~~i~G~iG 48 (61)
T 3mp7_B 23 KKPNWATYKRAAKITGLGIILIGLIG 48 (61)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555544455677777777777753
No 7
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=5.69 E-value=2.5e+02 Score=14.84 Aligned_cols=14 Identities=21% Similarity=0.223 Sum_probs=8.5
Q ss_pred HHHHHHhhhhhhhc
Q 028844 104 LLAVFFRMEKVAIR 117 (203)
Q Consensus 104 ila~~~~~E~~~~~ 117 (203)
++-+++++|+++..
T Consensus 17 iFFAI~FRePPri~ 30 (32)
T 3arc_T 17 FFFAIFFREPPRIT 30 (32)
T ss_dssp HHHHHHTSCCCCCC
T ss_pred HHHhhhhcCCCCCC
Confidence 34456778877643
No 8
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=5.38 E-value=3.3e+02 Score=15.63 Aligned_cols=15 Identities=13% Similarity=0.304 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHH
Q 028844 124 KILGTVVSIAGAFIV 138 (203)
Q Consensus 124 ~~~G~~l~~~Gv~~l 138 (203)
+.+|+..++++.+.-
T Consensus 15 ~aigl~v~f~~~L~P 29 (46)
T 1v54_M 15 QAIGLSVTFLSFLLP 29 (46)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 677888888877653
No 9
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=5.25 E-value=4.8e+02 Score=16.22 Aligned_cols=16 Identities=31% Similarity=0.497 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 028844 124 KILGTVVSIAGAFIVS 139 (203)
Q Consensus 124 ~~~G~~l~~~Gv~~l~ 139 (203)
-+++.++.++|++++.
T Consensus 22 LifA~vLfi~GI~iil 37 (67)
T 2jp3_A 22 LIFGGLLCIAGIALAL 37 (67)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHH
Confidence 3566777788887764
No 10
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=5.09 E-value=5e+02 Score=16.35 Aligned_cols=16 Identities=25% Similarity=0.443 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 028844 124 KILGTVVSIAGAFIVS 139 (203)
Q Consensus 124 ~~~G~~l~~~Gv~~l~ 139 (203)
-+++.++.++|++++.
T Consensus 21 LifA~vLfi~GI~iil 36 (72)
T 2jo1_A 21 LVIAGILFILGILIVL 36 (72)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3566677788887764
Done!