Query 028844
Match_columns 203
No_of_seqs 201 out of 1542
Neff 8.0
Searched_HMMs 13730
Date Mon Mar 25 04:57:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028844.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028844hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 38.7 17 0.0013 17.0 2.8 19 168-186 2-20 (27)
2 d2axtl1 f.23.31.1 (L:1-37) Pho 9.6 1.2E+02 0.009 15.1 3.7 20 166-185 16-35 (37)
3 d2axtt1 f.23.34.1 (T:1-30) Pho 6.0 1.3E+02 0.0093 14.0 1.4 9 107-115 20-28 (30)
4 d1v54m_ f.23.7.1 (M:) Mitochon 4.5 2E+02 0.015 15.0 1.7 14 124-137 15-28 (43)
5 d1rh5b_ f.23.28.1 (B:) Preprot 4.0 1.7E+02 0.012 16.2 1.2 24 113-136 17-40 (56)
6 d1pv7a_ f.38.1.2 (A:) Lactose 3.3 6.8E+02 0.049 16.9 9.3 33 85-117 39-73 (417)
7 d1niga_ a.25.2.1 (A:) Hypothet 2.6 4.7E+02 0.034 16.7 2.4 19 180-198 95-113 (148)
8 d1nw1a_ d.144.1.8 (A:) Choline 2.3 4.4E+02 0.032 19.3 2.4 20 172-191 347-366 (395)
9 d2iuba2 f.17.3.1 (A:286-349) M 2.2 5.7E+02 0.042 13.5 2.4 8 35-42 11-18 (64)
10 d1q90r_ f.23.12.1 (R:) ISP sub 2.2 5.1E+02 0.037 12.9 4.3 19 56-74 7-25 (39)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=38.68 E-value=17 Score=16.98 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 028844 168 ALGGLLLTVTCFSSATWKI 186 (203)
Q Consensus 168 ~lG~ll~l~aa~~~a~y~i 186 (203)
.+|.+..-++.+.||.|--
T Consensus 2 vlgli~~tl~glf~aayqq 20 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHHH
Confidence 4788889999999998853
No 2
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.59 E-value=1.2e+02 Score=15.05 Aligned_cols=20 Identities=25% Similarity=0.281 Sum_probs=16.0
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 028844 166 NWALGGLLLTVTCFSSATWK 185 (203)
Q Consensus 166 ~~~lG~ll~l~aa~~~a~y~ 185 (203)
+.-+|.++.+.-++.++.|.
T Consensus 16 sLy~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 16 SLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 34589999988888888875
No 3
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.04 E-value=1.3e+02 Score=14.03 Aligned_cols=9 Identities=22% Similarity=0.143 Sum_probs=4.9
Q ss_pred HHHhhhhhh
Q 028844 107 VFFRMEKVA 115 (203)
Q Consensus 107 ~~~~~E~~~ 115 (203)
.++++|++.
T Consensus 20 aiffreppr 28 (30)
T d2axtt1 20 AIFFREPPR 28 (30)
T ss_dssp HHHTSCCCC
T ss_pred HHHhcCCCC
Confidence 345666643
No 4
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.50 E-value=2e+02 Score=14.96 Aligned_cols=14 Identities=14% Similarity=0.368 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHH
Q 028844 124 KILGTVVSIAGAFI 137 (203)
Q Consensus 124 ~~~G~~l~~~Gv~~ 137 (203)
+.+|+..++++.+.
T Consensus 15 ~aigLt~~f~~~L~ 28 (43)
T d1v54m_ 15 QAIGLSVTFLSFLL 28 (43)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 77888888887764
No 5
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=4.05 E-value=1.7e+02 Score=16.20 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=11.8
Q ss_pred hhhhccccchhHHHHHHHHHHHHH
Q 028844 113 KVAIRSRSSQAKILGTVVSIAGAF 136 (203)
Q Consensus 113 ~~~~~~~~~~~~~~G~~l~~~Gv~ 136 (203)
|+++++--..++..|+.+.+.|.+
T Consensus 17 KP~~~Ef~~ia~v~~iG~~i~G~I 40 (56)
T d1rh5b_ 17 KPTKDEYLAVAKVTALGISLLGII 40 (56)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333345566666666654
No 6
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=3.30 E-value=6.8e+02 Score=16.88 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=23.7
Q ss_pred ccChhhHhhhhhhhHHHHHHHHHHH--hhhhhhhc
Q 028844 85 YSSPTLASAMGNLIPGITFLLAVFF--RMEKVAIR 117 (203)
Q Consensus 85 ~t~a~~asil~~~~Pv~~~ila~~~--~~E~~~~~ 117 (203)
..++++.+++.....+...+.+.+. +-||.++|
T Consensus 39 g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr 73 (417)
T d1pv7a_ 39 HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLR 73 (417)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 4678888888887777666666553 45888877
No 7
>d1niga_ a.25.2.1 (A:) Hypothetical protein Ta1238 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=2.57 E-value=4.7e+02 Score=16.74 Aligned_cols=19 Identities=11% Similarity=0.209 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 028844 180 SSATWKIFQVQSYFLALLW 198 (203)
Q Consensus 180 ~~a~y~il~~~~~~~~~~~ 198 (203)
=|++|+.+.+.-+..+.-|
T Consensus 95 k~slYmflArsh~~~Av~~ 113 (148)
T d1niga_ 95 RWSLYMFLARSAVDSAVYW 113 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3666666666655555555
No 8
>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}
Probab=2.26 E-value=4.4e+02 Score=19.35 Aligned_cols=20 Identities=25% Similarity=0.504 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028844 172 LLLTVTCFSSATWKIFQVQS 191 (203)
Q Consensus 172 ll~l~aa~~~a~y~il~~~~ 191 (203)
.+.+++-+.|++|.++|.+.
T Consensus 347 ~~~~~s~l~W~lW~~iq~~~ 366 (395)
T d1nw1a_ 347 PFVPVSHFFWGVWGLLQVEL 366 (395)
T ss_dssp GGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHhhhh
Confidence 46678889999999998764
No 9
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=2.16 E-value=5.7e+02 Score=13.47 Aligned_cols=8 Identities=13% Similarity=0.185 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 028844 35 LGTFILLH 42 (203)
Q Consensus 35 ia~i~l~~ 42 (203)
+-+++++|
T Consensus 11 ~it~iflP 18 (64)
T d2iuba2 11 IIATIFMP 18 (64)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33344444
No 10
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.16 E-value=5.1e+02 Score=12.89 Aligned_cols=19 Identities=11% Similarity=0.270 Sum_probs=11.9
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 028844 56 LTFSLLCKFFMLGVLGICL 74 (203)
Q Consensus 56 ~~~~~~~~~~~lgl~g~~l 74 (203)
..+|++..++..|-.+...
T Consensus 7 MgrR~~MNLll~G~~~~~~ 25 (39)
T d1q90r_ 7 MNKRNIMNLILAGGAGLPI 25 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhccchhh
Confidence 4567777777777655433
Done!